195 316 32 53 chr12 400 495 -143785960 - L3b LINE CR1 -248 1335 1243 212 349 0 0 chr12 619 682 -143785773 - L2 LINE L2 -34 3279 3217 183 246 116 0 chr12 747 816 -143785639 - L2 LINE L2 -216 3097 3021 1254 199 3 94 chr12 1384 1600 -143784855 - AluJo SINE Alu -8 304 127 1600 111 0 0 chr12 1600 1825 -143784630 + AluSg/x SINE Alu 85 309 -3 1254 199 3 94 chr12 1825 1939 -143784516 - AluJo SINE Alu -185 127 4 653 106 0 11 chr12 1941 2035 -143784420 - AluJo SINE Alu -176 136 44 699 296 55 17 chr12 3371 3790 -143782665 + L1M4 LINE L1 3070 3504 -2642 1651 180 3 3 chr12 3793 4082 -143782373 + AluJb SINE Alu 21 309 -3 914 143 0 0 chr12 4083 4216 -143782239 + AluJb SINE Alu 1 133 -179 403 119 0 0 chr12 4224 4283 -143782172 + Alu SINE Alu 246 304 -7 900 292 30 28 chr12 4341 4841 -143781614 + L1M4 LINE L1 3526 4026 -2120 1228 166 0 10 chr12 4841 5034 -143781421 + AluSx SINE Alu 1 191 -121 2166 95 3 16 chr12 5071 5375 -143781080 + AluSx SINE Alu 1 300 -12 2352 235 152 3 chr12 5693 6259 -143780196 + MLT1E1 LTR MaLR 5 654 0 350 276 35 55 chr12 7650 7849 -143778606 - L1MC5 LINE L1 -54 7907 7713 258 105 0 0 chr12 7858 7896 -143778559 + (A)n Simple_repeat Simple_repeat 1 38 0 1519 171 0 38 chr12 7898 8191 -143778264 - AluJo SINE Alu -30 282 1 29 84 0 0 chr12 8913 8984 -143777471 + GC_rich Low_complexity Low_complexity 1 71 0 198 118 0 0 chr12 9304 9338 -143777117 + (GGA)n Simple_repeat Simple_repeat 2 35 0 259 265 265 0 chr12 10345 10447 -143776008 - L2 LINE L2 0 3313 3185 238 331 107 22 chr12 10448 10626 -143775829 - MIR SINE MIR -38 224 32 433 305 0 16 chr12 10697 10942 -143775513 - MER5C DNA MER1_type 0 324 25 207 374 49 8 chr12 11707 11830 -143774625 - L2 LINE L2 -19 3294 3167 189 312 48 91 chr12 12514 12700 -143773755 + MIR3 SINE MIR 30 207 -1 212 160 0 60 chr12 12896 12946 -143773509 + CT-rich Low_complexity Low_complexity 1 47 0 542 238 89 12 chr12 13531 13699 -143772756 + MIR3 SINE MIR 14 194 -14 369 0 0 0 chr12 14055 14096 -143772359 + (TG)n Simple_repeat Simple_repeat 1 41 0 1558 196 21 7 chr12 15070 15361 -143771094 - AluJo SINE Alu -17 295 1 277 239 230 9 chr12 15385 15498 -143770957 + MIR SINE MIR 117 254 -8 848 196 7 0 chr12 15499 15647 -143770808 - FRAM SINE Alu -8 168 20 1304 172 12 124 chr12 16573 16911 -143769544 + AluJo SINE Alu 12 311 -1 280 179 26 0 chr12 16911 16989 -143769466 + GA-rich Low_complexity Low_complexity 1 80 0 632 313 55 9 chr12 17536 17767 -143768688 - MIR SINE MIR -21 241 3 324 256 0 23 chr12 17846 17932 -143768523 - MIR3 SINE MIR -30 178 95 381 335 12 48 chr12 18203 18370 -143768085 - MIR SINE MIR -6 256 96 947 189 22 11 chr12 18423 18608 -143767847 + MER5A DNA MER1_type 1 187 -2 299 344 139 35 chr12 19777 20356 -143766099 - L2 LINE L2 0 3272 2545 771 279 165 0 chr12 20713 21118 -143765337 - L2 LINE L2 -1203 2111 1640 1055 326 67 41 chr12 21437 22375 -143764080 + L2 LINE L2 2313 3271 -1 205 325 50 50 chr12 22761 22881 -143763574 + MIR SINE MIR 114 233 -29 195 215 139 25 chr12 23006 23085 -143763370 + MIR SINE MIR 67 154 -108 184 214 18 71 chr12 23661 23717 -143762738 - L3 LINE CR1 -33 1544 1492 417 289 35 52 chr12 24080 24253 -143762202 - MER5B DNA MER1_type -8 170 1 323 324 11 28 chr12 24934 25116 -143761339 + CT-rich Low_complexity Low_complexity 2 180 0 313 341 29 0 chr12 26452 26590 -143759865 - MIR3 SINE MIR -15 193 52 528 253 66 11 chr12 28429 28611 -143757844 - HAL1 LINE L1 -10 2497 2306 768 275 48 7 chr12 28619 28892 -143757563 - L1ME3 LINE L1 0 6162 5879 1912 135 0 0 chr12 28920 29187 -143757268 - AluSx SINE Alu -45 267 1 253 212 9 80 chr12 29187 29290 -143757165 - HAL1 LINE L1 -197 2310 2214 532 297 170 3 chr12 29291 29661 -143756794 - HAL1 LINE L1 -353 2154 1723 3248 279 97 18 chr12 29674 31143 -143755312 - HAL1 LINE L1 -845 1662 78 236 229 0 0 chr12 32397 32445 -143754010 - L2 LINE L2 -4 3309 3262 194 389 56 0 chr12 32498 32606 -143753849 + L3b LINE CR1 1340 1453 -130 323 167 23 92 chr12 33430 33604 -143752851 + C-rich Low_complexity Low_complexity 2 163 0 319 269 39 48 chr12 34327 34431 -143752024 - L2 LINE L2 -4 3268 3166 249 339 179 9 chr12 34421 34645 -143751810 + L2 LINE L2 2476 2737 -577 * 298 283 93 78 chr12 34805 35010 -143751445 + L2 LINE L2 3100 3307 -6 499 310 66 68 chr12 35034 35508 -143750947 - L2 LINE L2 -108 3205 2713 401 329 77 31 chr12 36501 36723 -143749732 - L1MC4 LINE L1 -382 7660 7429 268 299 210 6 chr12 37019 37176 -143749279 - MIR SINE MIR -6 256 68 212 275 0 66 chr12 37733 37824 -143748631 + GA-rich Low_complexity Low_complexity 1 85 0 791 175 36 0 chr12 37827 37964 -143748491 + FLAM_C SINE Alu 1 142 -1 340 320 176 0 chr12 37991 38144 -143748311 - MIR SINE MIR -76 186 7 632 353 95 16 chr12 38298 38615 -143747840 + L3b LINE CR1 1147 1488 -95 323 68 85 0 chr12 38737 38796 -143747659 + MADE1 DNA Mariner 3 66 -14 518 282 98 20 chr12 38808 39011 -143747444 - MIR SINE MIR -26 236 5 263 225 119 0 chr12 39028 39132 -143747323 - MIR SINE MIR -62 146 25 213 309 37 12 chr12 40856 40937 -143745518 - MIR SINE MIR 0 262 180 289 200 13 40 chr12 41141 41216 -143745239 - MIR SINE MIR -139 123 51 180 0 0 0 chr12 42648 42668 -143743787 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 190 226 132 19 chr12 44562 44615 -143741840 - MIR SINE MIR -63 145 87 207 282 14 42 chr12 49373 49444 -143737011 - L2 LINE L2 -8 3264 3196 751 285 130 12 chr12 50970 51293 -143735162 - MLT1K LTR MaLR 0 588 228 366 311 155 24 chr12 52017 52223 -143734232 - L3 LINE CR1 -12 1565 1333 263 277 43 11 chr12 52386 52480 -143733975 - MIR SINE MIR -132 130 34 583 353 28 8 chr12 54974 55229 -143731226 - MLT1L LTR MaLR -17 598 339 180 0 0 0 chr12 55252 55272 -143731183 + (CCA)n Simple_repeat Simple_repeat 1 20 0 204 125 0 0 chr12 55327 55359 -143731096 + (TAA)n Simple_repeat Simple_repeat 3 34 0 489 232 271 34 chr12 55359 55536 -143730919 - MIR SINE MIR 0 262 44 283 246 184 9 chr12 56532 56646 -143729809 - MER117 DNA MER1_type -9 188 55 357 309 25 56 chr12 56664 56826 -143729629 - MIR3 SINE MIR -49 159 3 262 286 0 13 chr12 58201 58278 -143728177 + (TG)n Simple_repeat Simple_repeat 2 77 0 4300 141 49 59 chr12 58314 59715 -143726740 + pTR5 LTR ERV1 742 2438 0 962 241 56 25 chr12 60267 60553 -143725902 + MLT1F LTR MaLR 240 534 -8 256 238 114 9 chr12 60581 60686 -143725769 - MLT1L LTR MaLR -221 321 206 364 305 198 0 chr12 61785 61982 -143724473 - L1M4 LINE L1 -1882 4264 4029 1113 134 6 0 chr12 61990 62161 -143724294 - AluSg/x SINE Alu -15 295 124 2518 42 3 0 chr12 62161 62468 -143723987 - AluY SINE Alu -3 308 1 1021 343 50 48 chr12 62476 62850 -143723605 - BaEV-int LTR ERV1 -2711 3938 3566 315 0 0 0 chr12 62850 62885 -143723570 + (CCCTAA)n Simple_repeat Simple_repeat 1 35 0 1021 343 50 48 chr12 62885 63352 -143723103 - BaEV-int LTR ERV1 -3083 3566 3095 603 278 147 4 chr12 63877 64129 -143722326 + MER102b DNA MER1_type 51 338 -3 251 308 109 19 chr12 64191 64347 -143722108 - L3 LINE CR1 0 1577 1408 337 246 45 18 chr12 64631 64741 -143721714 - LTR18B LTR ERVL -234 380 268 522 96 0 0 chr12 64793 64866 -143721589 - LTR18B LTR ERVL -212 402 330 211 291 0 0 chr12 64882 64937 -143721518 + CT-rich Low_complexity Low_complexity 2 56 0 1274 323 40 32 chr12 64942 65701 -143720754 - BaEV-int LTR ERV1 -5731 2054 1290 576 333 25 45 chr12 65898 66255 -143720200 - BaEV-int LTR ERV1 -6779 1006 657 245 202 19 106 chr12 67873 67977 -143718478 + MIR3 SINE MIR 87 181 -27 206 125 0 54 chr12 68177 68233 -143718222 + (TTA)n Simple_repeat Simple_repeat 2 54 0 317 302 38 9 chr12 68612 68718 -143717737 - MIR SINE MIR -109 153 45 588 297 80 6 chr12 69230 69451 -143717004 + MIR SINE MIR 22 258 -4 181 330 66 47 chr12 70286 70392 -143716063 + L3b LINE CR1 1342 1449 -134 528 267 142 22 chr12 70870 71095 -143715360 - MIR SINE MIR -3 259 8 394 267 60 0 chr12 71452 71568 -143714887 - MIR SINE MIR -117 145 23 360 239 90 22 chr12 73350 73484 -143712971 - MIR3 SINE MIR -49 159 17 398 333 45 0 chr12 74310 74466 -143711989 - MIR SINE MIR -64 198 36 828 293 129 25 chr12 74847 75243 -143711212 - LTR16A LTR ERVL -7 443 7 268 296 133 104 chr12 75304 75544 -143710911 - L2 LINE L2 0 3272 3026 363 239 55 47 chr12 77092 77290 -143709165 - MIR SINE MIR -9 253 6 359 293 49 0 chr12 77553 77676 -143708779 - MIR3 SINE MIR -11 197 69 216 250 0 0 chr12 77677 77733 -143708722 + (TG)n Simple_repeat Simple_repeat 1 56 0 1082 265 21 11 chr12 77797 78080 -143708375 - LTR16C LTR ERVL -52 439 154 1622 138 12 108 chr12 78409 78742 -143707713 + AluJb SINE Alu 1 301 -1 372 196 19 84 chr12 79109 79216 -143707239 + MIR3 SINE MIR 100 199 -9 193 297 99 0 chr12 79266 79357 -143707098 - L2 LINE L2 -10 3303 3204 2347 98 0 6 chr12 79391 79706 -143706749 + AluSq SINE Alu 1 313 0 356 306 131 33 chr12 79711 79894 -143706561 - MIR SINE MIR -13 249 49 236 291 100 0 chr12 79995 80105 -143706350 - L2 LINE L2 -218 3054 2934 691 266 62 0 chr12 80442 80634 -143705821 - MIR SINE MIR -1 261 58 261 0 0 0 chr12 81831 81860 -143704595 + (TG)n Simple_repeat Simple_repeat 1 29 0 420 286 27 38 chr12 81897 82082 -143704373 + MIR3 SINE MIR 20 202 -6 261 354 82 38 chr12 82142 82300 -143704155 + L3 LINE CR1 338 502 -1075 371 326 21 0 chr12 82747 82888 -143703567 - L2 LINE L2 -272 3041 2898 493 206 70 106 chr12 82988 83187 -143703268 + MER20 DNA MER1_type 2 193 -26 1633 239 268 8 chr12 83204 83988 -143702467 - L2 LINE L2 -508 2806 1819 458 254 98 54 chr12 83988 84264 -143702191 + L1MC5 LINE L1 7510 7797 -164 479 229 118 7 chr12 84305 84458 -143701997 - L2 LINE L2 -1476 1838 1669 302 355 0 8 chr12 84576 84697 -143701758 - MIR SINE MIR 0 262 143 776 253 192 15 chr12 85182 85589 -143700866 - L2 LINE L2 0 3313 2835 470 295 109 6 chr12 85806 85989 -143700466 - MIR SINE MIR -6 256 55 216 305 0 24 chr12 86353 86435 -143700020 + (TATG)n Simple_repeat Simple_repeat 3 82 0 263 194 90 15 chr12 87683 87750 -143698705 + MIR SINE MIR 84 155 -107 291 312 91 26 chr12 87910 88064 -143698391 - L2 LINE L2 -3 3269 3106 547 267 86 16 chr12 88402 88589 -143697866 - MIR SINE MIR -19 243 44 537 345 17 2 chr12 88640 88838 -143697617 - MIR SINE MIR -19 243 43 403 306 67 22 chr12 89012 89146 -143697309 - MLT1G1 LTR MaLR -28 567 428 331 194 0 15 chr12 89196 89263 -143697192 - MLT1G1 LTR MaLR -280 315 250 474 348 98 14 chr12 89282 89710 -143696745 - L2 LINE L2 -1258 2056 1593 210 276 38 57 chr12 89769 89874 -143696581 - MIR SINE MIR -11 251 149 270 277 36 22 chr12 91387 91407 -143695048 - L1MA10 LINE L1 0 6334 6315 3182 228 51 15 chr12 91407 92745 -143693710 - L1ME1 LINE L1 -8 6158 4673 1670 139 41 60 chr12 93440 93756 -143692699 + AluJb SINE Alu 1 310 -2 206 143 29 0 chr12 94341 94376 -143692079 - MER91 DNA MER1_type -117 73 38 272 324 20 20 chr12 95019 95121 -143691334 - MIR SINE MIR -80 182 81 2561 142 51 10 chr12 95622 96037 -143690418 + MSTB1 LTR MaLR 1 432 0 193 267 0 0 chr12 96100 96145 -143690310 - L2 LINE L2 -23 3290 3246 281 272 62 0 chr12 96210 96291 -143690164 + MIR SINE MIR 17 102 -160 349 286 19 23 chr12 96693 97005 -143689450 + C-rich Low_complexity Low_complexity 1 311 0 248 130 22 0 chr12 97025 97071 -143689384 + CT-rich Low_complexity Low_complexity 1 47 0 9968 59 3 0 chr12 97193 98540 -143687915 - L1P LINE L1 -1772 4374 3024 274 224 105 26 chr12 98540 98616 -143687839 + MLT1J LTR MaLR 330 411 -100 806 120 0 0 chr12 98719 98827 -143687628 - FLAM_C SINE Alu -35 108 1 479 49 0 0 chr12 98830 98891 -143687564 + L1P LINE L1 2970 3030 -3116 305 344 0 16 chr12 99004 99132 -143687323 - MLT1J LTR MaLR -270 241 116 270 264 18 36 chr12 99233 99343 -143687112 - L2 LINE L2 -222 3050 2943 906 274 145 3 chr12 99347 99720 -143686735 - MLT1J2 LTR MaLR 0 450 25 309 296 43 17 chr12 100034 100149 -143686306 - MIR SINE MIR -58 204 87 879 157 0 0 chr12 100149 100283 -143686172 + AluJo SINE Alu 1 134 -178 1586 189 36 26 chr12 101825 102211 -143684244 + Charlie5 DNA MER1_type 2234 2623 0 216 341 54 16 chr12 102512 102641 -143683814 + L2 LINE L2 3139 3272 0 521 181 75 8 chr12 102832 102965 -143683490 + L2 LINE L2 2600 2741 -573 1270 234 31 31 chr12 103029 103388 -143683067 + MLT1E-int LTR MaLR 248 606 -765 466 269 147 103 chr12 103589 104237 -143682218 + MLT1E-int LTR MaLR 696 1371 0 1544 228 127 29 chr12 104241 104396 -143682059 + MLT1E LTR MaLR 2 140 -453 2223 133 0 0 chr12 104396 104697 -143681758 + AluSx SINE Alu 1 301 -11 1544 228 127 29 chr12 104697 105067 -143681388 + MLT1E LTR MaLR 140 579 -14 590 324 29 3 chr12 105079 105404 -143681051 + L2 LINE L2 2792 3125 -188 1395 209 0 0 chr12 105405 105673 -143680782 - AluJb SINE Alu -5 307 40 235 230 257 0 chr12 105695 105769 -143680686 + L2 LINE L2 3221 3313 0 223 267 60 26 chr12 106072 106188 -143680267 - MIR SINE MIR -59 149 30 6060 97 11 0 chr12 106973 108159 -143678296 - L1PA10 LINE L1 -5 6163 4962 510 246 22 22 chr12 108706 108840 -143677615 + MIR SINE MIR 20 153 -109 2955 217 71 19 chr12 108911 109709 -143676746 - L1ME1 LINE L1 -2 6164 5325 566 329 46 71 chr12 109725 110141 -143676314 + L2 LINE L2 2230 2628 -686 2153 140 13 0 chr12 110141 110448 -143676007 - AluSx SINE Alu -1 311 1 566 329 46 71 chr12 110448 110620 -143675835 + L2 LINE L2 2628 2803 -511 621 327 59 11 chr12 110661 110933 -143675522 + L2 LINE L2 2910 3194 -78 915 168 23 51 chr12 110958 111154 -143675301 - MER45B DNA AcHobo -541 1040 840 2161 104 0 4 chr12 111154 111433 -143675022 + AluSg SINE Alu 1 278 -32 200 35 35 0 chr12 111433 111462 -143674993 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 915 168 23 51 chr12 111462 111478 -143674977 - MER45B DNA AcHobo -739 842 833 2486 123 47 90 chr12 111697 112288 -143674167 - MER4D LTR ERV1 -337 566 1 505 303 40 21 chr12 112288 112504 -143673951 - L1M2 LINE L1 -600 5574 5349 341 364 64 27 chr12 112535 112925 -143673530 - L1M4 LINE L1 -764 5382 4982 1622 179 65 4 chr12 112939 113218 -143673237 + AluJo SINE Alu 4 299 -13 264 200 0 0 chr12 113486 113536 -143672919 + MIR3 SINE MIR 157 206 -2 531 247 47 65 chr12 113642 113693 -143672762 - MIR3 SINE MIR -6 202 152 669 172 28 50 chr12 113693 113873 -143672582 + MER5B DNA MER1_type 2 177 -1 531 247 47 65 chr12 113873 113991 -143672464 - MIR3 SINE MIR -56 152 36 185 265 29 15 chr12 114290 114358 -143672097 - L2 LINE L2 -210 3062 2994 393 237 61 9 chr12 115501 115615 -143670840 + MIR3 SINE MIR 86 205 -3 198 0 0 0 chr12 117105 117127 -143669328 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 245 352 0 22 chr12 118920 119102 -143667353 + G-rich Low_complexity Low_complexity 1 178 0 * 274 245 11 87 chr12 119012 119196 -143667259 + (CGGGG)n Simple_repeat Simple_repeat 5 174 0 372 300 155 20 chr12 119446 119646 -143666809 - MIR SINE MIR -1 261 35 398 240 87 27 chr12 119744 119894 -143666561 - L1ME4a LINE L1 -2 6119 5961 404 175 25 0 chr12 121253 121333 -143665122 - MER45B DNA AcHobo -431 609 528 419 185 62 0 chr12 121334 121415 -143665040 - 5S rRNA rRNA -33 88 3 1700 239 95 14 chr12 121415 121918 -143664537 - MER45B DNA AcHobo -496 544 1 184 154 154 19 chr12 121918 121970 -143664485 + L2 LINE L2 3214 3272 0 325 281 125 23 chr12 122480 122608 -143663847 + MIR3 SINE MIR 22 162 -46 794 294 20 20 chr12 122704 122717 -143663738 - MIR SINE MIR 0 262 250 2285 112 3 0 chr12 122717 123020 -143663435 + AluSc SINE Alu 1 304 -5 794 294 20 20 chr12 123020 123258 -143663197 - MIR SINE MIR -11 251 11 330 195 0 0 chr12 123291 123368 -143663087 + (TCCA)n Simple_repeat Simple_repeat 3 79 0 629 302 80 7 chr12 123721 123996 -143662459 + L3 LINE CR1 1282 1576 -1 2004 166 7 0 chr12 124198 124506 -143661949 + AluJo SINE Alu 1 310 -2 234 286 170 0 chr12 124764 124876 -143661579 - MIR3 SINE MIR -63 145 15 482 276 21 21 chr12 124939 125084 -143661371 - MIR SINE MIR -112 150 6 218 276 105 0 chr12 125385 125461 -143660994 + MIR SINE MIR 46 129 -133 218 281 34 45 chr12 125561 125650 -143660805 + MIR SINE MIR 17 104 -104 1522 83 98 5 chr12 125659 125864 -143660591 - AluY SINE Alu -87 224 1 861 223 31 49 chr12 125864 126151 -143660304 + L1ME2 LINE L1 5599 5880 -286 1929 179 0 0 chr12 126160 126456 -143659999 + AluJb SINE Alu 1 296 -16 18374 150 38 17 chr12 126469 130012 -143656443 + L1PB1 LINE L1 3 3470 -3397 1911 117 4 11 chr12 130012 130278 -143656177 + AluSp SINE Alu 50 313 0 18374 150 38 17 chr12 130278 132762 -143653693 + L1PB1 LINE L1 3470 6192 -675 1632 127 32 118 chr12 132762 133102 -143653353 + AluSq SINE Alu 1 311 -2 18374 150 38 17 chr12 133102 133791 -143652664 + L1PB1 LINE L1 6192 6865 -2 386 278 57 26 chr12 133774 133968 -143652487 + L1ME1 LINE L1 5822 6021 -145 * 333 228 0 0 chr12 133960 134039 -143652416 + L1ME2 LINE L1 6076 6154 -10 * 209 293 0 0 chr12 134066 134124 -143652331 - MER5A DNA MER1_type -45 144 87 1996 173 68 34 chr12 134146 134590 -143651865 + LTR2B LTR ERV1 32 490 0 195 259 37 0 chr12 134593 134647 -143651808 - MER5A DNA MER1_type -105 84 29 911 186 36 0 chr12 135226 135393 -143651062 + FRAM SINE Alu 4 176 0 231 357 43 45 chr12 135838 136142 -143650313 + L2 LINE L2 2924 3270 -2 208 329 14 0 chr12 136280 136350 -143650105 + MIR3 SINE MIR 123 193 -15 245 239 0 42 chr12 136539 136610 -143649845 + CT-rich Low_complexity Low_complexity 4 71 0 224 275 25 0 chr12 137251 137331 -143649124 + C-rich Low_complexity Low_complexity 2 83 0 228 331 16 24 chr12 141085 141209 -143645246 + CT-rich Low_complexity Low_complexity 2 124 0 2184 94 0 7 chr12 142947 143283 -143643172 + AluY SINE Alu 1 334 0 486 324 78 5 chr12 143379 143598 -143642857 + MIR SINE MIR 15 249 -13 1820 109 16 12 chr12 143630 143887 -143642568 + AluSx SINE Alu 55 312 0 198 405 34 6 chr12 144000 144178 -143642277 - L3b LINE CR1 -79 1504 1322 527 270 61 25 chr12 144941 145104 -143641351 - MIR3 SINE MIR -18 190 22 414 0 0 0 chr12 146270 146316 -143640139 + (CA)n Simple_repeat Simple_repeat 1 46 0 180 347 0 40 chr12 147489 147613 -143638842 + MIR SINE MIR 33 151 -57 22 0 0 0 chr12 148225 148247 -143638208 + GC_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr12 148283 148317 -143638138 + GC_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr12 148689 148712 -143637743 + AT_rich Low_complexity Low_complexity 1 23 0 520 272 140 30 chr12 148804 149039 -143637416 + MIR SINE MIR 1 261 -1 320 348 81 36 chr12 149146 149589 -143636866 - L3 LINE CR1 -291 1286 824 1545 166 8 4 chr12 149621 149874 -143636581 - AluJo SINE Alu -17 295 42 430 271 153 20 chr12 149882 150229 -143636226 - L1MC4a LINE L1 -1635 6173 5781 457 301 77 17 chr12 150875 151083 -143635372 - MIR SINE MIR 0 262 28 478 294 27 0 chr12 151966 152112 -143634343 - HERVI LTR ERV1 -2573 5212 5063 270 257 40 0 chr12 152764 152838 -143633617 + MIR3 SINE MIR 89 165 -43 433 264 14 47 chr12 153256 153468 -143632987 - L1MC4a LINE L1 -1875 5933 5729 2797 189 49 5 chr12 153647 154240 -143632215 - L1M2c LINE L1 -6157 632 14 3340 138 5 0 chr12 154241 154814 -143631641 - Tigger1 DNA MER2_type -1236 1182 607 1971 116 14 7 chr12 155281 155574 -143630881 - AluSx SINE Alu -17 295 1 180 0 0 0 chr12 155983 156003 -143630452 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr12 157034 157058 -143629397 + AT_rich Low_complexity Low_complexity 1 24 0 1617 178 0 4 chr12 157094 157363 -143629092 - AluSx SINE Alu -44 268 1 255 320 5 104 chr12 157553 157658 -143628797 + L3 LINE CR1 668 742 -835 2075 98 11 0 chr12 157658 157959 -143628496 + AluSg SINE Alu 1 304 0 255 320 5 104 chr12 157959 158074 -143628381 + L3 LINE CR1 742 867 -710 1757 21 0 0 chr12 158095 158334 -143628121 - L1P LINE L1 -791 5355 5117 324 253 23 0 chr12 158358 158445 -143628010 + MIR SINE MIR 48 136 -126 308 291 91 94 chr12 158431 158750 -143627705 + L2 LINE L2 2914 3231 -41 * 368 386 55 15 chr12 158994 159320 -143627135 + L2 LINE L2 2439 2777 -537 194 307 27 13 chr12 159700 159775 -143626680 + L2 LINE L2 3175 3250 -22 289 299 35 0 chr12 160327 160414 -143626041 + MIR3 SINE MIR 98 187 -21 417 239 46 23 chr12 160513 160643 -143625812 - L2 LINE L2 -1 3271 3139 589 323 22 35 chr12 160668 160900 -143625555 - MIR SINE MIR -19 243 15 218 343 0 14 chr12 162012 162085 -143624370 - L2 LINE L2 -1 3271 3200 186 286 79 0 chr12 162317 162380 -143624075 - L2 LINE L2 -19 3253 3186 283 301 165 5 chr12 163284 163484 -143622971 - MIR SINE MIR -3 259 21 209 214 45 107 chr12 163849 163961 -143622494 + MIR SINE MIR 17 121 -87 455 344 18 12 chr12 164603 164766 -143621689 - L2 LINE L2 0 3313 3150 1184 144 5 26 chr12 165031 165226 -143621229 + AluSx SINE Alu 1 191 -121 2166 95 3 16 chr12 165263 165567 -143620888 + AluSx SINE Alu 1 300 -12 2352 235 152 3 chr12 165885 166451 -143620004 + MLT1E1 LTR MaLR 5 654 0 350 276 35 55 chr12 167842 168041 -143618414 - L1MC5 LINE L1 -54 7907 7713 258 105 0 0 chr12 168050 168088 -143618367 + (A)n Simple_repeat Simple_repeat 1 38 0 1519 171 0 38 chr12 168090 168383 -143618072 - AluJo SINE Alu -30 282 1 29 84 0 0 chr12 169105 169176 -143617279 + GC_rich Low_complexity Low_complexity 1 71 0 198 118 0 0 chr12 169496 169530 -143616925 + (GGA)n Simple_repeat Simple_repeat 2 35 0 259 265 265 0 chr12 170536 170638 -143615817 - L2 LINE L2 0 3313 3185 238 331 107 22 chr12 170639 170817 -143615638 - MIR SINE MIR -38 224 32 433 305 0 16 chr12 170888 171133 -143615322 - MER5C DNA MER1_type 0 324 25 207 374 49 8 chr12 171898 172021 -143614434 - L2 LINE L2 -19 3294 3167 189 312 48 91 chr12 172705 172891 -143613564 + MIR3 SINE MIR 30 207 -1 212 160 0 60 chr12 173087 173137 -143613318 + CT-rich Low_complexity Low_complexity 1 47 0 542 238 89 12 chr12 173722 173890 -143612565 + MIR3 SINE MIR 14 194 -14 369 0 0 0 chr12 174246 174287 -143612168 + (TG)n Simple_repeat Simple_repeat 1 41 0 1558 196 21 7 chr12 175261 175552 -143610903 - AluJo SINE Alu -17 295 1 277 239 230 9 chr12 175576 175689 -143610766 + MIR SINE MIR 117 254 -8 848 196 7 0 chr12 175690 175838 -143610617 - FRAM SINE Alu -8 168 20 1304 172 12 124 chr12 176764 177102 -143609353 + AluJo SINE Alu 12 311 -1 280 179 26 0 chr12 177102 177180 -143609275 + GA-rich Low_complexity Low_complexity 1 80 0 660 311 58 9 chr12 177727 177952 -143608503 - MIR SINE MIR -21 241 6 324 256 0 23 chr12 178037 178123 -143608332 - MIR3 SINE MIR -30 178 95 381 335 12 48 chr12 178394 178561 -143607894 - MIR SINE MIR -6 256 96 947 189 22 11 chr12 178614 178799 -143607656 + MER5A DNA MER1_type 1 187 -2 299 344 139 35 chr12 179968 180547 -143605908 - L2 LINE L2 0 3272 2545 771 279 165 0 chr12 180904 181309 -143605146 - L2 LINE L2 -1203 2111 1640 1055 326 67 41 chr12 181628 182566 -143603889 + L2 LINE L2 2313 3271 -1 205 325 50 50 chr12 182952 183072 -143603383 + MIR SINE MIR 114 233 -29 195 215 139 25 chr12 183197 183276 -143603179 + MIR SINE MIR 67 154 -108 184 214 18 71 chr12 183852 183908 -143602547 - L3 LINE CR1 -33 1544 1492 417 289 35 52 chr12 184271 184444 -143602011 - MER5B DNA MER1_type -8 170 1 323 324 11 28 chr12 185125 185307 -143601148 + CT-rich Low_complexity Low_complexity 2 180 0 313 341 29 0 chr12 186643 186781 -143599674 - MIR3 SINE MIR -15 193 52 528 253 66 11 chr12 188620 188802 -143597653 - HAL1 LINE L1 -10 2497 2306 768 275 48 7 chr12 188810 189083 -143597372 - L1ME3 LINE L1 0 6162 5879 1893 132 4 0 chr12 189111 189377 -143597078 - AluSx SINE Alu -45 267 1 253 212 9 80 chr12 189377 189480 -143596975 - HAL1 LINE L1 -197 2310 2214 573 289 180 3 chr12 189481 189848 -143596607 - HAL1 LINE L1 -353 2154 1723 3248 279 97 18 chr12 189861 191330 -143595125 - HAL1 LINE L1 -845 1662 78 236 229 0 0 chr12 192585 192633 -143593822 - L2 LINE L2 -4 3309 3262 194 389 56 0 chr12 192686 192794 -143593661 + L3b LINE CR1 1340 1453 -130 323 167 23 92 chr12 193619 193793 -143592662 + C-rich Low_complexity Low_complexity 2 163 0 319 269 39 48 chr12 194516 194620 -143591835 - L2 LINE L2 -4 3268 3166 249 339 179 9 chr12 194610 194834 -143591621 + L2 LINE L2 2476 2737 -577 * 298 283 93 78 chr12 194994 195199 -143591256 + L2 LINE L2 3100 3307 -6 499 310 66 68 chr12 195223 195697 -143590758 - L2 LINE L2 -108 3205 2713 401 329 77 31 chr12 196690 196912 -143589543 - L1MC4 LINE L1 -382 7660 7429 268 299 210 6 chr12 197208 197365 -143589090 - MIR SINE MIR -6 256 68 212 275 0 66 chr12 197922 198013 -143588442 + GA-rich Low_complexity Low_complexity 1 85 0 791 175 36 0 chr12 198016 198153 -143588302 + FLAM_C SINE Alu 1 142 -1 340 320 176 0 chr12 198180 198333 -143588122 - MIR SINE MIR -76 186 7 632 353 95 16 chr12 198487 198804 -143587651 + L3b LINE CR1 1147 1488 -95 323 68 85 0 chr12 198926 198985 -143587470 + MADE1 DNA Mariner 3 66 -14 518 282 98 20 chr12 198997 199200 -143587255 - MIR SINE MIR -26 236 5 263 225 119 0 chr12 199217 199321 -143587134 - MIR SINE MIR -62 146 25 213 309 37 12 chr12 201045 201126 -143585329 - MIR SINE MIR 0 262 180 289 200 13 40 chr12 201330 201405 -143585050 - MIR SINE MIR -139 123 51 180 0 0 0 chr12 202837 202857 -143583598 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 190 226 132 19 chr12 204751 204804 -143581651 - MIR SINE MIR -63 145 87 192 77 0 0 chr12 208525 208551 -143577904 + (CCTG)n Simple_repeat Simple_repeat 4 29 0 207 282 14 42 chr12 209568 209639 -143576816 - L2 LINE L2 -8 3264 3196 195 316 32 53 chr12 210322 210417 -143576038 - L3b LINE CR1 -248 1335 1243 212 349 0 0 chr12 210541 210604 -143575851 - L2 LINE L2 -34 3279 3217 183 246 116 0 chr12 210669 210738 -143575717 - L2 LINE L2 -216 3097 3021 1266 201 3 88 chr12 211304 211520 -143574935 - AluJo SINE Alu -8 304 124 1600 114 0 0 chr12 211520 211747 -143574708 + AluSg/x SINE Alu 85 311 -1 1266 201 3 88 chr12 211747 211859 -143574596 - AluJo SINE Alu -188 124 4 653 106 0 11 chr12 211861 211955 -143574500 - AluJo SINE Alu -176 136 44 699 296 55 17 chr12 213291 213710 -143572745 + L1M4 LINE L1 3070 3504 -2642 1651 180 3 3 chr12 213713 214002 -143572453 + AluJb SINE Alu 21 309 -3 914 143 0 0 chr12 214003 214136 -143572319 + AluJb SINE Alu 1 133 -179 403 119 0 0 chr12 214144 214203 -143572252 + Alu SINE Alu 246 304 -7 1170 292 77 30 chr12 214261 214761 -143571694 + L1M4 LINE L1 3526 4070 -2076 2002 112 10 36 chr12 214761 214896 -143571559 + AluSx SINE Alu 1 138 -174 2541 40 0 0 chr12 214896 215195 -143571260 + AluY SINE Alu 10 308 -3 2002 112 10 36 chr12 215195 215364 -143571091 + AluSx SINE Alu 138 297 -15 1170 292 77 30 chr12 215364 215569 -143570886 + L1M4 LINE L1 4070 4264 -1882 849 245 56 25 chr12 216803 217089 -143569366 - MLT1F LTR MaLR -8 534 240 3915 142 49 59 chr12 217641 219042 -143567413 - pTR5 LTR ERV1 0 2438 742 262 286 0 13 chr12 219078 219155 -143567300 + (CA)n Simple_repeat Simple_repeat 2 77 0 373 309 25 56 chr12 220531 220693 -143565762 + MIR3 SINE MIR 3 159 -49 248 246 184 9 chr12 220711 220825 -143565630 + MER117 DNA MER1_type 55 188 -9 181 260 14 41 chr12 221695 221768 -143564687 + L2 LINE L2 3201 3271 -1 502 232 271 34 chr12 221821 221998 -143564457 + MIR SINE MIR 44 262 0 180 0 0 0 chr12 222082 222102 -143564353 + (TGG)n Simple_repeat Simple_repeat 1 20 0 534 349 28 8 chr12 222125 222380 -143564075 + MLT1L LTR MaLR 339 598 -17 181 262 119 12 chr12 224420 224504 -143561951 - L3 LINE CR1 -3 1574 1482 281 277 43 11 chr12 224874 224968 -143561487 + MIR SINE MIR 34 130 -132 391 311 155 24 chr12 225131 225337 -143561118 + L3 LINE CR1 1333 1565 -12 656 287 124 13 chr12 226070 226384 -143560071 + MLT1K LTR MaLR 240 588 0 1392 24 0 0 chr12 227463 227627 -143558828 + (TCCA)n Simple_repeat Simple_repeat 4 167 0 318 280 21 44 chr12 227942 228163 -143558292 + GA-rich Low_complexity Low_complexity 1 215 0 957 168 0 24 chr12 228837 229004 -143557451 + FRAM SINE Alu 2 164 -2 350 305 0 38 chr12 229020 229125 -143557330 + HAL1b LINE L1 1245 1345 -3 230 174 0 22 chr12 229557 229603 -143556852 + GA-rich Low_complexity Low_complexity 3 47 0 349 149 19 93 chr12 229646 229753 -143556702 - L1MA5 LINE L1 0 6300 6202 185 309 128 43 chr12 230190 230284 -143556171 - L3 LINE CR1 -72 1505 1404 314 370 45 19 chr12 230298 230452 -143556003 + L1ME4a LINE L1 5852 6009 -112 2528 40 7 0 chr12 230522 230825 -143555630 - AluY SINE Alu -5 306 2 225 286 0 0 chr12 230874 230923 -143555532 - L3 LINE CR1 -193 1384 1336 443 293 14 7 chr12 231765 231912 -143554543 + MER63A DNA MER1_type 63 210 0 435 371 38 24 chr12 232695 232908 -143553547 + L2 LINE L2 3098 3313 0 1611 131 35 46 chr12 233473 233756 -143552699 - AluJb SINE Alu 0 312 33 21 36 0 0 chr12 233903 233931 -143552524 + GC_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr12 234209 234243 -143552212 + GC_rich Low_complexity Low_complexity 1 34 0 559 257 115 40 chr12 235814 236040 -143550415 - MIR SINE MIR -15 247 5 494 295 81 59 chr12 236115 236489 -143549966 - L1ME4a LINE L1 -133 5988 5601 2529 182 25 2 chr12 236489 236934 -143549521 - L1MB3 LINE L1 -10 6173 5719 494 295 81 59 chr12 236934 237016 -143549439 - L1ME4a LINE L1 -520 5601 5522 24 0 0 0 chr12 237984 238008 -143548447 + AT_rich Low_complexity Low_complexity 1 24 0 1102 229 15 4 chr12 238996 239258 -143547197 + L1MB8 LINE L1 5874 6138 -40 685 312 113 27 chr12 239325 239890 -143546565 + L2 LINE L2 2700 3311 -2 237 282 141 0 chr12 239966 240037 -143546418 - MIR SINE MIR -65 197 117 209 373 13 0 chr12 240035 240110 -143546345 - MIR3 SINE MIR -130 78 3 * 331 307 81 32 chr12 240577 240763 -143545692 - MIR3 SINE MIR -56 206 12 297 269 81 62 chr12 242226 242386 -143544069 - MIR SINE MIR -1 261 99 307 261 49 12 chr12 242462 242588 -143543867 + MIR SINE MIR 64 200 -62 195 42 0 0 chr12 242936 242960 -143543495 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 347 354 111 0 chr12 243065 243209 -143543246 + L3b LINE CR1 1321 1480 -103 243 291 0 0 chr12 244850 244905 -143541550 + C-rich Low_complexity Low_complexity 5 59 0 659 262 38 29 chr12 247303 247513 -143538942 - MIR SINE MIR -50 212 1 1326 90 4 0 chr12 247621 247855 -143538600 + (TGGA)n Simple_repeat Simple_repeat 1 236 0 2422 51 0 3 chr12 248072 248368 -143538087 + AluY SINE Alu 1 295 -16 486 207 83 0 chr12 248577 248698 -143537757 - MIR SINE MIR -86 176 46 186 43 0 0 chr12 249120 249143 -143537312 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 713 238 117 26 chr12 252401 252632 -143533823 + MIR SINE MIR 9 260 -2 329 344 4 19 chr12 252667 252791 -143533664 + MIR SINE MIR 39 149 -59 234 378 0 0 chr12 253216 253298 -143533157 + L3b LINE CR1 1330 1411 -172 21 0 0 0 chr12 253833 253854 -143532601 + AT_rich Low_complexity Low_complexity 1 21 0 2098 123 0 13 chr12 255786 256094 -143530361 + AluSx SINE Alu 1 304 -8 229 213 5 190 chr12 256399 256615 -143529840 + L1MC4a LINE L1 5881 6056 -1752 539 217 109 22 chr12 257544 257682 -143528773 - MER6 DNA MER2_type 0 865 -5 203 272 48 97 chr12 259216 259319 -143527136 + MER5A DNA MER1_type 57 165 -24 641 278 20 7 chr12 260792 260943 -143525512 + MIR SINE MIR 2 154 -108 464 314 149 0 chr12 261093 261281 -143525174 + MIR SINE MIR 41 256 -6 244 204 9 157 chr12 262196 262304 -143524151 + L2 LINE L2 3220 3311 -2 435 288 108 0 chr12 262427 262566 -143523889 + MIR SINE MIR 104 257 -5 1579 97 4 25 chr12 264272 264510 -143521945 + MER41B LTR ERV1 1 233 -402 2656 108 18 13 chr12 264611 264890 -143521565 + MER41B LTR ERV1 236 520 -115 2113 106 0 0 chr12 264890 265236 -143521219 - AluSx SINE Alu 0 346 1 2656 108 18 13 chr12 265236 265353 -143521102 + MER41B LTR ERV1 520 635 0 6576 54 143 70 chr12 265792 266884 -143519571 + MER11A LTR ERVK 1 1266 0 219 125 175 0 chr12 266961 267001 -143519454 + L2 LINE L2 3267 3313 0 390 290 100 40 chr12 268794 268994 -143517461 + MIR SINE MIR 10 221 -41 500 264 156 27 chr12 269180 269514 -143516941 + L2 LINE L2 2497 2873 -441 954 267 83 55 chr12 269734 270191 -143516264 + L2 LINE L2 2843 3312 -1 1730 166 0 3 chr12 270631 270921 -143515534 - AluSx SINE Alu -21 291 3 423 218 99 14 chr12 270951 271093 -143515362 - L2 LINE L2 -1 3312 3159 2289 94 0 0 chr12 271442 271750 -143514705 + AluSg1 SINE Alu 1 308 -1 524 182 91 16 chr12 271884 272005 -143514450 - MER3 DNA MER1_type -4 205 76 229 148 37 111 chr12 272056 272110 -143514345 + MER3 DNA MER1_type 159 208 -1 * 451 174 43 65 chr12 272110 272154 -143514301 - MER3 DNA MER1_type -167 42 1 861 229 29 14 chr12 272252 272559 -143513896 + MER7A DNA MER2_type 1 337 0 569 129 11 11 chr12 272578 272671 -143513784 + Tigger2a DNA MER2_type 1 93 -341 374 243 0 0 chr12 273213 273287 -143513168 + FRAM/FAM SINE Alu 8 81 -85 243 163 20 0 chr12 273305 273354 -143513101 + L1MD3 LINE L1 7933 7982 -13 2085 99 0 17 chr12 273431 273733 -143512722 - AluSq SINE Alu -16 297 1 1871 166 78 24 chr12 274658 274825 -143511630 + MSTD LTR MaLR 1 158 -238 1885 131 3 17 chr12 274825 275122 -143511333 + AluJb SINE Alu 1 293 -19 1871 166 78 24 chr12 275122 275327 -143511128 + MSTD LTR MaLR 158 393 -3 5530 233 70 43 chr12 275445 275818 -143510637 + L1ME2 LINE L1 338 699 -5697 2199 116 0 0 chr12 275818 276121 -143510334 + AluSg SINE Alu 1 303 -7 1984 94 0 57 chr12 276121 276254 -143510201 + AluSc SINE Alu 1 140 -165 2247 78 0 3 chr12 276254 276547 -143509908 + AluY SINE Alu 1 292 -19 243 0 0 0 chr12 276551 276578 -143509877 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1984 94 0 57 chr12 276578 276761 -143509694 + AluSc SINE Alu 143 305 0 5530 233 70 43 chr12 276761 277145 -143509310 + L1ME2 LINE L1 699 1071 -5325 2280 117 0 0 chr12 277145 277454 -143509001 + AluSx SINE Alu 2 310 -2 5530 233 70 43 chr12 277454 278713 -143507742 + L1ME2 LINE L1 1071 2413 -3983 813 77 15 15 chr12 278713 278843 -143507612 + AluY SINE Alu 175 304 -7 9252 197 56 77 chr12 278844 281325 -143505130 + L1ME2 LINE L1 2362 4895 -1320 2170 66 0 0 chr12 281325 281596 -143504859 + AluY SINE Alu 33 303 -8 9252 197 56 77 chr12 281596 282091 -143504364 + L1ME2 LINE L1 4895 5272 -943 1659 146 0 71 chr12 282091 282413 -143504042 + AluJb SINE Alu 3 301 -11 9252 197 56 77 chr12 282413 282515 -143503940 + L1ME2 LINE L1 5272 5375 -840 315 273 108 0 chr12 282498 282637 -143503818 + L1ME2 LINE L1 5879 6032 -201 * 677 216 34 91 chr12 282658 282922 -143503533 + L1ME1 LINE L1 5899 6147 -19 1391 233 166 17 chr12 284761 285280 -143501175 + L2 LINE L2 1793 2388 -926 911 120 0 0 chr12 285283 285408 -143501047 + AluSq/x SINE Alu 1 125 -188 394 219 0 12 chr12 285434 285516 -143500939 + L2 LINE L2 2376 2456 -858 310 259 24 12 chr12 285487 285572 -143500883 - L2 LINE L2 -694 2620 2535 * 231 240 20 0 chr12 285696 285746 -143500709 - L2 LINE L2 -824 2490 2440 * 1119 236 97 95 chr12 285722 285834 -143500621 + L2 LINE L2 2609 2719 -594 2058 100 0 0 chr12 285834 286113 -143500342 + AluSx SINE Alu 3 281 -31 1119 236 97 95 chr12 286113 286722 -143499733 + L2 LINE L2 2719 3311 -2 728 281 41 27 chr12 289849 290070 -143496385 - MIR SINE MIR -38 224 1 241 304 107 14 chr12 290070 290182 -143496273 + MIR3 SINE MIR 79 204 -4 571 299 103 11 chr12 290889 291170 -143495285 + L1ME4a LINE L1 5610 5916 -205 676 264 83 25 chr12 291612 291840 -143494615 - MIR SINE MIR -8 254 5 2337 69 7 0 chr12 292063 292366 -143494089 + AluSq SINE Alu 1 305 -8 476 301 46 36 chr12 292641 292837 -143493618 + MIR SINE MIR 7 204 -58 216 97 0 0 chr12 293361 293392 -143493063 + (TCCCC)n Simple_repeat Simple_repeat 4 34 0 22 0 0 0 chr12 293913 293935 -143492520 + AT_rich Low_complexity Low_complexity 1 22 0 184 298 53 43 chr12 294144 294238 -143492217 + MIR SINE MIR 1 95 -167 3649 189 36 69 chr12 295866 296042 -143490413 + L1MC4a LINE L1 6888 7068 -740 664 178 85 8 chr12 296042 296160 -143490295 + FLAM_A SINE Alu 1 127 -6 3649 189 36 69 chr12 296160 296934 -143489521 + L1MC4a LINE L1 7068 7806 -2 1509 187 11 14 chr12 297129 297452 -143489003 - AluJo SINE Alu 0 322 1 725 312 16 28 chr12 297516 297766 -143488689 - MIR SINE MIR -10 252 6 2442 208 110 4 chr12 298577 299131 -143487324 - MER90 LTR ERV1 -1 613 1 617 250 0 59 chr12 299445 299597 -143486858 - MER5B DNA MER1_type -35 143 1 522 303 113 5 chr12 299606 299827 -143486628 - L3b LINE CR1 -235 1348 1104 482 365 6 6 chr12 300136 300303 -143486152 + MIR3 SINE MIR 20 186 -22 1843 82 49 98 chr12 300626 300954 -143485501 - AluSq SINE Alu -1 312 1 478 279 71 22 chr12 301028 301228 -143485227 - MIR SINE MIR -39 223 7 772 231 17 12 chr12 301228 301401 -143485054 + MER69A DNA AcHobo 4 177 0 290 131 262 0 chr12 303407 303468 -143482987 - MADE1 DNA Mariner -2 78 2 2080 211 117 20 chr12 303542 304083 -143482372 + MLT1E LTR MaLR 1 593 0 425 311 147 3 chr12 304226 304512 -143481943 + L1ME4a LINE L1 4965 5291 -855 388 236 145 37 chr12 304513 304755 -143481700 + L1ME4a LINE L1 5785 6052 -69 645 241 101 18 chr12 305327 305555 -143480900 + L1MB8 LINE L1 5932 6178 0 1803 113 0 8 chr12 305626 305873 -143480582 - AluSx SINE Alu -21 291 47 276 352 124 48 chr12 306009 306259 -143480196 + L3 LINE CR1 1099 1367 -210 955 204 11 0 chr12 306327 306513 -143479942 - MER5A DNA MER1_type -1 188 1 287 343 57 0 chr12 306732 306837 -143479618 - L2 LINE L2 -3 3310 3200 211 239 43 0 chr12 306912 306958 -143479497 - L2 LINE L2 -272 3041 2994 1208 123 16 0 chr12 307467 307654 -143478801 + L1PB1 LINE L1 5957 6146 -5 247 347 245 18 chr12 307824 309263 -143477192 - L2 LINE L2 -1231 2083 319 226 327 26 44 chr12 309912 310025 -143476430 + L3 LINE CR1 1449 1559 -18 422 230 120 0 chr12 312612 312712 -143473743 - FLAM_A SINE Alu -30 112 1 180 125 0 0 chr12 314636 314668 -143471787 + (TA)n Simple_repeat Simple_repeat 2 33 0 421 295 84 12 chr12 317339 317505 -143468950 + MIR SINE MIR 64 241 -21 422 274 85 24 chr12 317584 317748 -143468707 + MER5A DNA MER1_type 1 174 -15 599 202 9 0 chr12 319210 319319 -143467136 + MER81 DNA DNA 5 114 0 21 0 0 0 chr12 319623 319644 -143466811 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr12 319776 319816 -143466639 + AT_rich Low_complexity Low_complexity 1 40 0 1183 143 0 0 chr12 319979 320154 -143466301 + FRAM SINE Alu 1 167 -9 279 79 0 0 chr12 320311 320349 -143466106 + (T)n Simple_repeat Simple_repeat 1 38 0 859 186 17 29 chr12 320366 320538 -143465917 - FAM SINE Alu -5 170 1 587 311 33 6 chr12 321809 321989 -143464466 + MIR3 SINE MIR 3 187 -21 2196 105 0 10 chr12 322320 322624 -143463831 - AluSq SINE Alu -12 301 1 1394 172 22 0 chr12 323640 323907 -143462548 + L1MB4 LINE L1 5908 6180 0 2233 103 0 0 chr12 323915 324207 -143462248 + AluSx SINE Alu 1 292 -20 208 278 0 19 chr12 324882 324936 -143461519 + MIR SINE MIR 88 140 -122 278 251 50 112 chr12 325156 325335 -143461120 + MIR SINE MIR 36 203 -59 467 203 11 16 chr12 325647 325829 -143460626 + GA-rich Low_complexity Low_complexity 1 181 0 2194 102 0 10 chr12 326455 326758 -143459697 + AluSq SINE Alu 1 300 -13 430 319 112 11 chr12 327070 327258 -143459197 + L3 LINE CR1 1370 1576 -1 768 244 45 61 chr12 327796 328319 -143458136 + PABL_B LTR ERV1 1 667 0 30489 87 12 9 chr12 328405 334082 -143452373 + L1PA7 LINE L1 748 6467 -2 531 174 83 38 chr12 334280 334412 -143452043 + MER6B DNA MER2_type 1 138 -72 180 0 0 0 chr12 334865 334885 -143451570 + (T)n Simple_repeat Simple_repeat 1 20 0 235 135 0 0 chr12 334920 334957 -143451498 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 23 54 0 0 chr12 335680 335717 -143450738 + AT_rich Low_complexity Low_complexity 1 37 0 2065 134 10 13 chr12 336388 336693 -143449762 - AluJb SINE Alu -8 304 1 2158 127 0 0 chr12 336879 337179 -143449276 + AluSx SINE Alu 1 300 -12 449 292 120 23 chr12 338662 338878 -143447577 + MIR SINE MIR 20 256 -6 378 304 113 16 chr12 339383 339577 -143446878 + L1ME LINE L1 5552 5764 -357 527 165 11 0 chr12 339578 339669 -143446786 + MER6 DNA MER2_type 1 92 -773 * 1460 136 54 7 chr12 339661 339940 -143446515 + MER6 DNA MER2_type 574 865 0 887 273 23 19 chr12 340441 340701 -143445754 - MIR SINE MIR 0 262 2 1836 152 3 13 chr12 340767 341069 -143445386 + AluJb SINE Alu 1 299 -13 340 163 98 11 chr12 341672 341764 -143444691 - LTR37A LTR ERV1 -54 372 273 918 87 0 0 chr12 341780 341895 -143444560 + AluSq/x SINE Alu 1 115 -197 2279 99 0 0 chr12 342170 342464 -143443991 + AluSx SINE Alu 1 294 -18 229 175 0 0 chr12 342923 342963 -143443492 + HAL1b LINE L1 859 898 -450 1042 194 142 36 chr12 343046 343376 -143443079 - Tigger5 DNA MER2_type -1 2322 1 286 186 69 98 chr12 343694 343796 -143442659 - MIR SINE MIR -56 206 108 24 0 0 0 chr12 343814 343838 -143442617 + AT_rich Low_complexity Low_complexity 1 24 0 239 336 69 8 chr12 343838 343969 -143442486 - MIR SINE MIR -122 140 2 321 241 51 0 chr12 344543 344622 -143441833 - L2 LINE L2 -31 3282 3200 2033 108 28 0 chr12 344626 344913 -143441542 - AluY SINE Alu -16 295 1 433 334 36 81 chr12 345084 345490 -143440965 - L2 LINE L2 -229 3043 2652 316 237 11 22 chr12 345600 345710 -143440745 + L1M2 LINE L1 1574 2060 -4323 1774 168 0 10 chr12 345710 346002 -143440453 + AluSx SINE Alu 1 289 -23 412 329 90 40 chr12 346106 346550 -143439905 - L2 LINE L2 -814 2500 2035 562 270 85 10 chr12 346629 346829 -143439626 + L2 LINE L2 3084 3298 -15 229 329 183 25 chr12 347294 347441 -143439014 + MIR3 SINE MIR 1 166 -74 1420 310 176 19 chr12 349086 349892 -143436563 - L2 LINE L2 -1 3312 2633 1709 171 0 11 chr12 349892 350200 -143436255 + AluJb SINE Alu 6 310 0 1420 310 176 19 chr12 350200 350631 -143435824 - L2 LINE L2 -680 2633 1876 2221 105 3 3 chr12 350633 350939 -143435516 + AluSx SINE Alu 1 306 -6 1195 263 60 75 chr12 352231 352816 -143433639 - L2 LINE L2 0 3313 2738 306 87 0 0 chr12 353629 353675 -143432780 + (A)n Simple_repeat Simple_repeat 1 46 0 1485 192 45 14 chr12 354443 354729 -143431726 + AluJo SINE Alu 1 295 -17 2297 122 0 0 chr12 355009 355313 -143431142 + AluSx SINE Alu 1 304 -8 1885 154 33 3 chr12 355821 356120 -143430335 + AluSx SINE Alu 3 310 -2 2158 130 0 0 chr12 356150 356450 -143430005 + AluSx SINE Alu 1 300 -12 191 273 136 57 chr12 356455 356631 -143429824 - L2 LINE L2 -844 2470 2281 2529 60 0 13 chr12 356998 357313 -143429142 + AluY SINE Alu 1 311 0 183 252 65 56 chr12 357318 357425 -143429030 - L2 LINE L2 -1386 1928 1821 23 54 0 0 chr12 357796 357833 -143428622 + AT_rich Low_complexity Low_complexity 1 37 0 2119 130 7 0 chr12 357846 358145 -143428310 + AluSx SINE Alu 1 301 -11 1741 183 0 10 chr12 358149 358439 -143428016 + AluJo SINE Alu 1 287 -25 755 221 6 0 chr12 358474 358632 -143427823 + L1MA10 LINE L1 6175 6333 -1 24 32 0 0 chr12 359796 359827 -143426628 + AT_rich Low_complexity Low_complexity 1 31 0 288 0 0 0 chr12 360473 360505 -143425950 + (TG)n Simple_repeat Simple_repeat 2 33 0 315 91 0 232 chr12 361700 361799 -143424656 + MADE1 DNA Mariner 3 78 -2 193 122 0 61 chr12 361907 361956 -143424499 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 21 0 0 0 chr12 362384 362405 -143424050 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 362860 362881 -143423574 + AT_rich Low_complexity Low_complexity 1 21 0 2030 156 0 0 chr12 363555 363879 -143422576 + AluJo SINE Alu 1 324 0 26 0 0 0 chr12 364920 364946 -143421509 + AT_rich Low_complexity Low_complexity 1 26 0 332 277 80 15 chr12 365493 365630 -143420825 + L1MEd LINE L1 141 286 -5919 810 167 19 6 chr12 365765 365921 -143420534 + Charlie1b DNA MER1_type 54 211 -312 240 254 35 35 chr12 366026 366140 -143420315 + L1MEd LINE L1 1027 1140 -5065 2466 84 0 3 chr12 366178 366487 -143419968 + AluSq SINE Alu 1 308 -5 2035 139 10 0 chr12 366495 366796 -143419659 + AluJb SINE Alu 1 304 -8 1744 135 24 0 chr12 367016 367268 -143419187 + AluSx SINE Alu 40 297 -15 2003 135 154 5 chr12 367371 367742 -143418713 + MSTA LTR MaLR 1 426 -2 2311 101 10 0 chr12 368065 368361 -143418094 - AluSq SINE Alu -14 299 1 242 164 0 33 chr12 368384 368445 -143418010 - L1MC5 LINE L1 -50 7911 7853 2296 191 68 37 chr12 368499 369044 -143417411 + MER68 LTR ERV1 1 562 0 2332 78 7 0 chr12 369319 369614 -143416841 + AluSp SINE Alu 4 300 -13 853 229 97 64 chr12 370174 370294 -143416161 + MLT1F LTR MaLR 10 125 -417 1981 149 0 10 chr12 370294 370596 -143415859 - AluJb SINE Alu -13 299 1 853 229 97 64 chr12 370596 370832 -143415623 + MLT1F LTR MaLR 125 439 -103 2369 95 0 3 chr12 370832 371138 -143415317 + AluSg SINE Alu 1 305 -5 853 229 97 64 chr12 371138 371239 -143415216 + MLT1F LTR MaLR 439 535 -7 809 215 44 6 chr12 372014 372038 -143414417 + L1MEd LINE L1 2156 2178 -4037 2035 160 3 0 chr12 372038 372345 -143414110 + AluSg SINE Alu 1 308 -2 809 215 44 6 chr12 372345 372603 -143413852 + L1MEd LINE L1 2178 2406 -3809 2244 100 0 7 chr12 372879 373180 -143413275 - AluSx SINE Alu -13 299 1 23 0 0 0 chr12 373189 373212 -143413243 + AT_rich Low_complexity Low_complexity 1 23 0 35885 80 12 8 chr12 373215 379337 -143407118 + L1PA6 LINE L1 2 6152 -2 2219 114 3 0 chr12 379440 379738 -143406717 - AluSq SINE Alu -14 299 1 2467 68 0 0 chr12 379749 380042 -143406413 - AluSg1 SINE Alu -12 297 5 438 231 0 0 chr12 380163 380241 -143406214 - AluJ/FLAM SINE Alu -234 78 1 2219 95 10 0 chr12 380266 380561 -143405894 + AluSp SINE Alu 1 298 -15 2150 107 31 0 chr12 380573 380863 -143405592 + AluSx SINE Alu 1 299 -13 2429 59 0 0 chr12 381587 381907 -143404548 - L1PA7 LINE L1 -111 6043 5724 1016 118 0 0 chr12 382103 382238 -143404217 + AluSq/x SINE Alu 1 135 -177 2442 97 0 0 chr12 382238 382547 -143403908 + AluSx SINE Alu 1 309 -3 1530 168 60 3 chr12 383479 383764 -143402691 + AluJb SINE Alu 1 301 -11 2304 95 0 3 chr12 384057 384353 -143402102 + AluSc SINE Alu 1 295 -14 25 75 0 0 chr12 384654 384707 -143401748 + AT_rich Low_complexity Low_complexity 1 53 0 2333 78 10 0 chr12 384903 385196 -143401259 + AluY SINE Alu 1 296 -15 582 244 101 32 chr12 385692 385909 -143400546 - MIR SINE MIR 0 262 31 1641 155 18 14 chr12 387415 387692 -143398763 + AluJb SINE Alu 1 278 -34 1188 189 5 5 chr12 387720 387937 -143398518 + AluJo SINE Alu 85 301 -11 2500 85 0 0 chr12 387964 388271 -143398184 + AluSg SINE Alu 1 307 -3 269 333 93 0 chr12 388318 388447 -143398008 + MLT1L LTR MaLR 343 483 -132 2019 143 3 16 chr12 389107 389421 -143397034 + AluSg SINE Alu 1 310 0 582 206 56 103 chr12 389546 389779 -143396676 + L1MC4a LINE L1 6526 6747 -1061 191 270 16 48 chr12 389798 389861 -143396594 - L2 LINE L2 -799 2515 2455 1668 172 35 0 chr12 389886 390171 -143396284 + AluJb SINE Alu 1 295 -17 518 167 9 0 chr12 390185 390293 -143396162 + GA-rich Low_complexity Low_complexity 1 109 0 2028 134 10 3 chr12 390410 390700 -143395755 + AluSx SINE Alu 1 292 -20 404 331 165 36 chr12 390704 391463 -143394992 - L2 LINE L2 -1073 2241 1385 2369 85 0 0 chr12 391615 391910 -143394545 - AluY SINE Alu -16 295 1 479 199 38 61 chr12 393231 393362 -143393093 + FLAM_A SINE Alu 1 128 -5 3490 197 73 36 chr12 393624 394606 -143391849 + L1ME1 LINE L1 4559 5504 -662 2205 110 0 17 chr12 394606 394907 -143391548 + AluSx SINE Alu 1 296 -16 3490 197 73 36 chr12 394907 394920 -143391535 + L1ME1 LINE L1 5504 5515 -651 2382 72 16 0 chr12 394920 395225 -143391230 + AluY SINE Alu 1 310 -1 3490 197 73 36 chr12 395225 395477 -143390978 + L1ME1 LINE L1 5515 5756 -410 1926 150 0 3 chr12 395477 395770 -143390685 - AluJb SINE Alu -20 292 1 3490 197 73 36 chr12 395770 396081 -143390374 + L1ME1 LINE L1 5756 6161 -5 244 195 11 46 chr12 396845 396932 -143389523 + A-rich Low_complexity Low_complexity 4 87 0 1721 145 76 0 chr12 397244 397561 -143388894 + MER7A DNA MER2_type 1 339 -7 1534 153 16 70 chr12 397685 397831 -143388624 + AluJo SINE Alu 1 123 -189 1852 160 0 17 chr12 397831 398131 -143388324 + AluSx SINE Alu 1 295 -17 1534 153 16 70 chr12 398131 398297 -143388158 + AluJo SINE Alu 123 296 -16 1658 185 58 6 chr12 398300 398762 -143387693 + L1MB4 LINE L1 5594 6132 -48 497 197 50 131 chr12 398804 398866 -143387589 + MIR SINE MIR 29 94 -168 2068 109 13 3 chr12 398866 399168 -143387287 + AluSx SINE Alu 1 305 -7 497 197 50 131 chr12 399168 399303 -143387152 + MIR SINE MIR 94 210 -52 1023 264 96 84 chr12 399713 400201 -143386254 - L2 LINE L2 -5 3308 2815 2202 123 0 7 chr12 400527 400836 -143385619 + AluSx SINE Alu 1 307 -5 32548 57 10 3 chr12 401029 407135 -143379320 - L1PA5 LINE L1 0 6154 11 502 228 228 0 chr12 407458 407616 -143378839 + HAL1 LINE L1 271 464 -2043 2097 239 113 16 chr12 407651 408392 -143378063 + HAL1 LINE L1 1185 1997 -510 21 36 0 0 chr12 408400 408428 -143378027 + AT_rich Low_complexity Low_complexity 1 28 0 795 267 71 8 chr12 408497 408692 -143377763 + HAL1 LINE L1 2253 2467 -40 1579 169 38 28 chr12 408692 408982 -143377473 - AluJo SINE Alu -19 293 1 795 267 71 8 chr12 408982 409026 -143377429 + HAL1 LINE L1 2467 2507 0 2458 70 0 3 chr12 409093 409393 -143377062 + AluY SINE Alu 1 299 -12 862 199 45 30 chr12 409762 409963 -143376492 + L1ME3 LINE L1 5959 6162 0 196 241 0 37 chr12 410334 410388 -143376067 + L3b LINE CR1 1532 1583 0 1924 131 31 3 chr12 410403 410694 -143375761 + AluSx SINE Alu 1 299 -13 2028 134 0 23 chr12 410850 411149 -143375306 + AluSx SINE Alu 1 292 -20 23 65 0 16 chr12 411188 411220 -143375235 + AT_rich Low_complexity Low_complexity 1 33 -28 1944 122 3 40 chr12 411220 411404 -143375051 - AluSq SINE Alu -21 292 122 2371 91 3 10 chr12 411404 411711 -143374744 - AluSp SINE Alu -8 305 1 1944 122 3 40 chr12 411711 411829 -143374626 - AluSq SINE Alu -191 122 1 23 65 0 16 chr12 411829 411858 -143374597 + AT_rich Low_complexity Low_complexity 33 61 0 1845 154 0 14 chr12 412234 412520 -143373935 - AluJo SINE Alu -22 290 9 1597 119 5 0 chr12 412567 412785 -143373670 + AluSp SINE Alu 1 219 -94 829 100 0 0 chr12 412785 412895 -143373560 + AluSp/q SINE Alu 188 297 -16 28 61 0 0 chr12 412919 412968 -143373487 + AT_rich Low_complexity Low_complexity 1 49 0 2085 115 3 26 chr12 413062 413367 -143373088 + AluSg SINE Alu 1 298 -12 1993 155 0 10 chr12 413630 413934 -143372521 - AluJb SINE Alu -11 301 1 23 33 0 0 chr12 414059 414089 -143372366 + AT_rich Low_complexity Low_complexity 1 30 0 1311 88 0 0 chr12 414172 414332 -143372123 - AluSp SINE Alu -19 294 135 1394 151 138 30 chr12 414631 414935 -143371520 + MER1B DNA MER1_type 1 337 0 2307 75 31 0 chr12 415325 415618 -143370837 + AluSx SINE Alu 1 302 -10 25 102 0 0 chr12 415797 415885 -143370570 + AT_rich Low_complexity Low_complexity 1 88 0 2588 120 31 2 chr12 416565 416982 -143369473 - Tigger4(Zombi) DNA MER2_type 0 2731 2303 862 159 0 0 chr12 416983 417115 -143369340 + FLAM_C SINE Alu 2 133 0 287 150 0 67 chr12 417123 417183 -143369272 - Tigger4(Zombi) DNA MER2_type -2675 56 1 257 288 194 12 chr12 418390 418550 -143367905 - MER5A DNA MER1_type 0 189 1 240 143 0 0 chr12 419966 420008 -143366447 + (CGAGG)n Simple_repeat Simple_repeat 4 45 0 182 297 94 0 chr12 420480 420544 -143365911 + L2 LINE L2 2380 2449 -865 1572 183 34 10 chr12 420898 421154 -143365301 + MLT2D LTR ERVL 113 378 -36 225 0 0 0 chr12 421154 421179 -143365276 + (CA)n Simple_repeat Simple_repeat 2 26 0 1572 183 34 10 chr12 421179 421217 -143365238 + MLT2D LTR ERVL 378 414 0 920 255 91 25 chr12 421221 421541 -143364914 - MLT1H LTR MaLR -182 413 45 2257 104 0 10 chr12 421589 421887 -143364568 + AluSq SINE Alu 3 297 -16 5225 166 121 35 chr12 422823 422879 -143363576 - Charlie1a DNA MER1_type -1306 1455 1405 2311 95 0 3 chr12 422879 423175 -143363280 + AluSx SINE Alu 1 295 -17 5225 166 121 35 chr12 423175 423523 -143362932 - Charlie1a DNA MER1_type -1356 1405 1088 1598 152 47 34 chr12 423523 423820 -143362635 - AluJo SINE Alu -1 311 11 5225 166 121 35 chr12 423820 423955 -143362500 - Charlie1a DNA MER1_type -1673 1088 966 2257 105 3 0 chr12 423955 424249 -143362206 - AluSx SINE Alu -17 295 1 5225 166 121 35 chr12 424249 424967 -143361488 - Charlie1a DNA MER1_type -1795 966 88 532 192 60 60 chr12 425240 425422 -143361033 - L2 LINE L2 0 3313 3132 1652 192 0 38 chr12 425488 425806 -143360649 - AluJo SINE Alu -6 306 1 203 77 0 26 chr12 425969 426008 -143360447 + (TAAAAA)n Simple_repeat Simple_repeat 2 39 0 2125 147 0 0 chr12 426029 426341 -143360114 + AluSx SINE Alu 1 312 0 837 187 0 0 chr12 426357 426491 -143359964 + FLAM_A SINE Alu 6 139 -3 2354 103 0 0 chr12 426527 426837 -143359618 + AluSx SINE Alu 1 310 -2 999 145 22 34 chr12 426853 427032 -143359423 - MER2 DNA MER2_type -168 177 1 1328 116 0 37 chr12 427335 427524 -143358931 - AluSg/x SINE Alu -23 289 108 635 85 0 0 chr12 427524 427606 -143358849 + AluSg1 SINE Alu 16 97 -212 187 286 0 18 chr12 427627 427683 -143358772 - L2 LINE L2 -665 2649 2595 4174 109 27 56 chr12 427870 428071 -143358384 - Tigger1 DNA MER2_type 0 2418 2213 2352 79 0 0 chr12 428071 428363 -143358092 - AluY SINE Alu -19 292 1 4174 109 27 56 chr12 428363 428861 -143357594 - Tigger1 DNA MER2_type -205 2213 1739 1036 65 0 0 chr12 428861 428985 -143357470 - AluSg/x SINE Alu -16 294 171 10588 122 20 44 chr12 428985 429176 -143357279 - Tigger1 DNA MER2_type -673 1745 1551 1715 171 31 3 chr12 429176 429469 -143356986 - AluJb SINE Alu -11 301 1 10588 122 20 44 chr12 429469 429593 -143356862 - Tigger1 DNA MER2_type -867 1551 1426 2271 92 10 3 chr12 429593 429887 -143356568 - AluSp SINE Alu -17 296 1 10588 122 20 44 chr12 429887 431338 -143355117 - Tigger1 DNA MER2_type -992 1426 19 212 190 70 10 chr12 432408 432480 -143353975 + MIR SINE MIR 113 189 -73 219 345 42 48 chr12 433112 433425 -143353030 - L2 LINE L2 -698 2616 2306 459 251 276 5 chr12 433703 433906 -143352549 - MIR SINE MIR 0 262 5 1874 162 7 0 chr12 433906 434209 -143352246 - AluJb SINE Alu -7 305 1 875 193 85 0 chr12 434220 434396 -143352059 - AluJo SINE Alu -24 288 98 2074 104 20 17 chr12 434456 434753 -143351702 + AluSx SINE Alu 3 300 -12 764 149 0 0 chr12 434904 435018 -143351437 + FLAM_C SINE Alu 2 115 -28 2376 93 3 0 chr12 435139 435439 -143351016 - AluSp SINE Alu -12 301 1 1848 159 57 21 chr12 435497 435880 -143350575 + L1MB8 LINE L1 5782 6178 0 2154 264 50 57 chr12 436190 436334 -143350121 - L2 LINE L2 -29 3284 3141 1848 153 32 0 chr12 436334 436616 -143349839 - AluJb SINE Alu -10 302 12 2154 264 50 57 chr12 436616 437082 -143349373 - L2 LINE L2 -172 3141 2673 2191 117 0 0 chr12 437082 437365 -143349090 + AluSx SINE Alu 1 283 -29 2154 264 50 57 chr12 437365 437443 -143349012 - L2 LINE L2 -640 2673 2596 600 228 8 0 chr12 437443 437570 -143348885 + FLAM_C SINE Alu 2 129 -4 2154 264 50 57 chr12 437570 438036 -143348419 - L2 LINE L2 -717 2596 2148 2542 72 0 0 chr12 438200 438504 -143347951 - AluY SINE Alu -7 304 1 591 156 0 0 chr12 438983 439079 -143347376 - FLAM_A SINE Alu -42 100 5 2422 80 0 22 chr12 439341 439653 -143346802 + AluSg SINE Alu 1 305 -5 915 166 13 6 chr12 439941 440098 -143346357 - FRAM SINE Alu -8 158 1 2237 109 0 13 chr12 440131 440434 -143346021 + AluSg SINE Alu 1 299 -11 2082 122 0 0 chr12 440679 440965 -143345490 - AluSp SINE Alu -7 306 21 1786 156 14 0 chr12 440968 441263 -143345192 - AluSx SINE Alu -13 299 1 735 130 0 0 chr12 441363 441471 -143344984 - FLAM_A SINE Alu -11 131 24 2171 102 7 23 chr12 441594 441897 -143344558 - AluSx SINE Alu -14 298 1 886 142 0 22 chr12 441901 442035 -143344420 - FLAM_C SINE Alu -2 131 1 1228 144 13 57 chr12 442875 443104 -143343351 - MER20 DNA MER1_type 0 219 1 2568 54 0 0 chr12 443358 443655 -143342800 - AluY SINE Alu -14 297 1 2431 60 0 10 chr12 443657 443956 -143342499 - AluY SINE Alu -15 296 1 2327 93 3 3 chr12 444044 444345 -143342110 - AluSx SINE Alu -11 301 1 2108 129 0 0 chr12 444508 444794 -143341661 - AluSg SINE Alu -11 299 14 260 154 0 0 chr12 445473 445512 -143340943 + MER21B LTR ERV1 126 164 -699 237 196 39 0 chr12 445574 445625 -143340830 - ALR/Alpha Satellite centromeric -58 114 62 281 157 36 42 chr12 445691 445857 -143340598 + (TATAA)n Simple_repeat Simple_repeat 3 167 0 277 279 6 24 chr12 445860 446025 -143340430 + (TTA)n Simple_repeat Simple_repeat 3 164 0 2046 141 3 13 chr12 446048 446217 -143340238 - AluJo SINE Alu -10 302 136 2244 124 0 0 chr12 446217 446523 -143339932 - AluSq SINE Alu -7 306 1 2046 141 3 13 chr12 446523 446658 -143339797 - AluJo SINE Alu -176 136 1 1286 154 35 95 chr12 446679 446718 -143339737 - L1MB2 LINE L1 -42 6129 6089 483 90 0 0 chr12 446718 446796 -143339659 + (TG)n Simple_repeat Simple_repeat 2 79 0 351 0 0 0 chr12 446795 446834 -143339621 + (TA)n Simple_repeat Simple_repeat 1 39 0 * 1286 154 35 95 chr12 446796 446834 -143339621 - L1MB2 LINE L1 -82 6089 6050 1597 137 12 4 chr12 446834 447083 -143339372 - AluSx SINE Alu -12 300 50 1286 154 35 95 chr12 447083 447244 -143339211 - L1MB2 LINE L1 -121 6050 5953 1925 106 22 99 chr12 447244 447566 -143338889 + AluSx SINE Alu 2 298 -14 1286 154 35 95 chr12 447566 447701 -143338754 - L1MB2 LINE L1 -218 5953 5812 2099 104 46 0 chr12 448050 448330 -143338125 + AluSx SINE Alu 1 293 -19 2144 128 20 0 chr12 448454 448752 -143337703 + AluSx SINE Alu 1 304 -8 291 28 0 0 chr12 449099 449135 -143337320 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 1757 168 4 0 chr12 449136 449416 -143337039 - AluSx SINE Alu -31 281 1 744 294 127 17 chr12 449463 449755 -143336700 - LTR16A LTR ERVL -6 444 121 2417 151 34 5 chr12 452204 452615 -143333840 - L1MB3 LINE L1 -13 6170 5748 1285 204 0 13 chr12 452618 452853 -143333602 - AluJb SINE Alu -80 232 1 1643 104 79 156 chr12 452853 453054 -143333401 - L1M3 LINE L1 -509 5674 5459 1974 129 3 62 chr12 453054 453379 -143333076 - AluJb SINE Alu -6 306 1 1643 104 79 156 chr12 453379 453423 -143333032 - L1M3 LINE L1 -724 5459 5413 1981 166 0 3 chr12 453423 453736 -143332719 - AluJb SINE Alu 0 312 1 1643 104 79 156 chr12 453736 453921 -143332534 - L1M3 LINE L1 -770 5413 5294 1878 143 35 0 chr12 453921 454208 -143332247 - AluJb SINE Alu -15 297 1 1643 104 79 156 chr12 454208 454307 -143332148 - L1M3 LINE L1 -889 5294 5189 241 156 0 0 chr12 454309 454354 -143332101 - AluJo SINE Alu -3 299 255 1093 178 0 70 chr12 454354 454568 -143331887 - AluJo SINE Alu -113 199 1 1387 184 0 4 chr12 454568 454840 -143331615 - L1M3 LINE L1 -979 5167 4897 2183 127 0 6 chr12 454856 455170 -143331285 - AluJb SINE Alu 0 312 1 572 293 47 14 chr12 455422 455637 -143330818 - HERV16 LTR ERVL -2409 3076 2855 1647 298 82 24 chr12 455697 455783 -143330672 - HERV16 LTR ERVL -2430 2566 2486 2221 98 3 3 chr12 455783 456102 -143330353 - AluSg SINE Alu 0 310 1 1647 298 82 24 chr12 456102 456927 -143329528 - HERV16 LTR ERVL -2510 2486 1735 2079 88 0 4 chr12 456927 457201 -143329254 + AluSg SINE Alu 25 297 -13 1647 298 82 24 chr12 457201 457368 -143329087 - HERV16 LTR ERVL -3261 1735 1579 2129 104 10 3 chr12 457415 457712 -143328743 - AluSx SINE Alu -13 299 1 859 280 206 16 chr12 457767 458131 -143328324 - LTR16A LTR ERVL -6 444 12 2354 74 3 0 chr12 458170 458479 -143327976 + AluY SINE Alu 1 310 -1 250 265 84 0 chr12 458943 459026 -143327429 - MIR SINE MIR -66 196 107 262 263 41 67 chr12 459114 459308 -143327147 - L1ME4a LINE L1 -2 6119 5931 1876 144 7 0 chr12 459403 459694 -143326761 - AluJb SINE Alu -15 297 5 24 32 0 0 chr12 459707 459738 -143326717 + AT_rich Low_complexity Low_complexity 1 31 0 614 195 0 49 chr12 459738 459861 -143326594 - FLAM_A SINE Alu -13 120 4 2117 102 3 0 chr12 459914 460232 -143326223 - AluSp SINE Alu 0 319 1 952 194 0 0 chr12 460235 460395 -143326060 - FRAM SINE Alu -16 160 1 1990 97 48 3 chr12 460736 461025 -143325430 + AluSx SINE Alu 1 302 -10 1703 159 3 38 chr12 461149 461469 -143324986 - AluSq SINE Alu -4 309 1 1612 137 47 18 chr12 462698 462976 -143323479 + AluJo SINE Alu 1 286 -26 239 67 0 0 chr12 463526 463556 -143322899 + Alu SINE Alu 1 30 -273 * 405 92 105 53 chr12 463530 463606 -143322849 + AluJ/FRAM SINE Alu 218 297 -5 224 285 58 90 chr12 464157 464284 -143322171 + L2 LINE L2 1792 1922 -1392 2089 124 3 0 chr12 464284 464591 -143321864 - AluSx SINE Alu -4 308 1 224 285 58 90 chr12 464591 464775 -143321680 + L2 LINE L2 1922 2093 -1221 196 295 137 0 chr12 464798 464893 -143321562 + L2 LINE L2 2301 2408 -906 1805 163 0 3 chr12 465697 465979 -143320476 - AluJo SINE Alu -31 281 1 2195 45 10 35 chr12 466049 466337 -143320118 - AluY SINE Alu -4 307 27 895 98 16 0 chr12 466340 466463 -143319992 - AluSq/x SINE Alu -187 125 1 1422 169 32 52 chr12 467497 467805 -143318650 + AluJo SINE Alu 1 302 -10 189 0 0 0 chr12 468684 468705 -143317750 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 2012 113 0 36 chr12 468726 469035 -143317420 + AluSg SINE Alu 1 298 -12 669 311 94 26 chr12 469036 469177 -143317278 - L2 LINE L2 -13 3300 3170 2233 95 0 0 chr12 469177 469471 -143316984 + AluSx SINE Alu 1 294 -18 1767 112 4 7 chr12 469471 469739 -143316716 + AluSg SINE Alu 33 300 -10 669 311 94 26 chr12 469739 470185 -143316270 - L2 LINE L2 -142 3171 2681 23 54 0 0 chr12 472536 472573 -143313882 + AT_rich Low_complexity Low_complexity 1 37 0 1974 100 25 0 chr12 472716 472877 -143313578 - AluSq SINE Alu -25 288 116 216 0 0 0 chr12 472877 472901 -143313554 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1974 100 25 0 chr12 472901 473020 -143313435 - AluSq SINE Alu -197 116 1 2203 102 0 0 chr12 473330 473624 -143312831 + AluSc SINE Alu 1 294 -15 236 289 96 0 chr12 473804 473887 -143312568 - MIR3 SINE MIR -3 205 115 267 305 238 7 chr12 474029 474180 -143312275 + MIR SINE MIR 2 187 -75 3940 168 58 3 chr12 474192 474936 -143311519 + L1MB7 LINE L1 5254 6038 -146 455 117 43 32 chr12 474942 475019 -143311436 + L1MB7 LINE L1 6090 6170 -14 1866 143 7 3 chr12 475019 475313 -143311142 - AluJb SINE Alu -17 295 1 455 117 43 32 chr12 475313 475329 -143311126 + L1MB7 LINE L1 6170 6184 0 1350 199 39 52 chr12 475513 475819 -143310636 - AluJo SINE Alu 0 302 1 2278 62 3 36 chr12 475829 476136 -143310319 - AluY SINE Alu -14 297 1 1477 131 84 29 chr12 476615 476889 -143309566 + AluJb SINE Alu 1 289 -23 21 36 0 0 chr12 476928 476956 -143309499 + AT_rich Low_complexity Low_complexity 1 28 0 1395 176 16 0 chr12 477492 477737 -143308718 + AluJo SINE Alu 49 297 -15 314 299 174 52 chr12 477832 477980 -143308475 - L2 LINE L2 -1037 2277 2148 2417 49 3 3 chr12 477980 478284 -143308171 - AluY SINE Alu -7 304 1 314 299 174 52 chr12 478284 478560 -143307895 - L2 LINE L2 -1166 2148 1801 201 237 43 32 chr12 478781 478874 -143307581 - L2 LINE L2 -1904 1410 1317 1840 148 3 3 chr12 479646 479943 -143306512 + AluJo SINE Alu 6 302 -10 390 176 22 22 chr12 480114 480205 -143306250 - L1MD1 LINE L1 -13 6229 6139 762 209 0 0 chr12 480859 480993 -143305462 - AluJo SINE Alu -178 134 1 666 215 15 0 chr12 481777 481907 -143304548 - AluJb SINE Alu -25 287 156 1066 146 158 62 chr12 481954 482093 -143304362 + AluJo SINE Alu 5 129 -183 2088 117 23 0 chr12 482093 482393 -143304062 + AluSx SINE Alu 1 307 -5 1066 146 158 62 chr12 482393 482493 -143303962 + AluJo SINE Alu 129 267 -45 706 97 167 0 chr12 482744 482858 -143303597 - AluJo SINE Alu -178 134 2 2275 48 44 0 chr12 484041 484336 -143302119 - AluY SINE Alu -2 309 2 411 313 55 46 chr12 486054 486271 -143300184 + MIR SINE MIR 20 238 -24 328 278 0 72 chr12 486337 486434 -143300021 + L1MC4 LINE L1 6613 6702 -1340 893 147 102 6 chr12 488542 488699 -143297756 - FRAM SINE Alu -5 171 1 189 268 110 24 chr12 488987 489069 -143297386 + MIR SINE MIR 76 164 -98 982 163 0 0 chr12 489093 489259 -143297196 - AluJb SINE Alu -17 295 130 255 31 0 0 chr12 489844 489876 -143296579 + (CGGGGG)n Simple_repeat Simple_repeat 3 34 0 203 128 51 0 chr12 489921 489960 -143296495 + (CGGG)n Simple_repeat Simple_repeat 2 42 0 47 92 0 0 chr12 490216 490347 -143296108 + GC_rich Low_complexity Low_complexity 1 131 0 21 36 0 0 chr12 490510 490538 -143295917 + GC_rich Low_complexity Low_complexity 1 28 0 213 207 32 36 chr12 491250 491312 -143295143 + MIR SINE MIR 90 150 -58 261 248 191 0 chr12 491781 491886 -143294569 + MIR3 SINE MIR 62 186 -22 251 305 23 62 chr12 491916 492093 -143294362 - L3 LINE CR1 -127 1450 1281 348 331 102 80 chr12 493387 493810 -143292645 - L2 LINE L2 -3 3269 2838 2010 102 10 14 chr12 494287 494582 -143291873 + AluSx SINE Alu 1 294 -18 187 154 39 96 chr12 495232 495284 -143291171 + L2 LINE L2 3262 3310 -3 22 35 0 0 chr12 496688 496717 -143289738 + AT_rich Low_complexity Low_complexity 1 29 0 388 202 0 36 chr12 496834 496918 -143289537 - L1ME3A LINE L1 -61 6109 6029 266 208 0 14 chr12 496950 497022 -143289433 - L1ME3A LINE L1 -200 5964 5894 21 0 0 0 chr12 497031 497052 -143289403 + AT_rich Low_complexity Low_complexity 1 21 0 542 161 11 0 chr12 497059 497146 -143289309 - FRAM SINE Alu -24 152 65 2005 131 7 0 chr12 497216 497521 -143288934 + AluSx SINE Alu 1 307 -5 337 347 127 14 chr12 499089 499302 -143287153 + MIR SINE MIR 20 256 -6 23 0 0 0 chr12 499741 499764 -143286691 + AT_rich Low_complexity Low_complexity 1 23 0 929 126 0 0 chr12 499764 499891 -143286564 - FLAM_C SINE Alu -6 127 1 1946 97 37 0 chr12 500675 500966 -143285489 - AluSx SINE Alu 0 303 3 1863 126 7 0 chr12 501046 501364 -143285091 + AluSg SINE Alu 1 320 0 2052 122 0 0 chr12 501364 501650 -143284805 + AluSx SINE Alu 1 286 -26 220 0 86 0 chr12 501654 501689 -143284766 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 28 48 0 0 chr12 501706 501748 -143284707 + AT_rich Low_complexity Low_complexity 1 42 0 383 271 45 8 chr12 501782 501915 -143284540 - L1MEd LINE L1 -5932 187 50 1327 206 3 47 chr12 502225 502386 -143284069 - AluJo SINE Alu -17 295 151 2195 59 38 0 chr12 502386 502676 -143283779 - AluY SINE Alu -10 301 1 1327 206 3 47 chr12 502676 502815 -143283640 - AluJo SINE Alu -161 151 8 1569 174 43 0 chr12 502916 503197 -143283258 - AluJo SINE Alu -9 303 11 541 245 55 70 chr12 503631 503831 -143282624 - L2 LINE L2 -3 3310 3114 1913 151 3 19 chr12 504477 504617 -143281838 + AluJo SINE Alu 1 142 -170 1744 141 41 0 chr12 504617 504907 -143281548 + AluJb SINE Alu 1 302 -10 1913 151 3 19 chr12 504907 505083 -143281372 + AluJo SINE Alu 142 312 0 921 229 62 33 chr12 505994 506238 -143280217 + MIR SINE MIR 6 256 -6 1478 152 0 84 chr12 506241 506563 -143279892 + AluJo SINE Alu 1 295 -17 500 281 20 7 chr12 506826 506979 -143279476 - MER117 DNA MER1_type -35 162 8 198 328 0 16 chr12 506979 507040 -143279415 - MIR SINE MIR -56 152 93 1860 174 0 10 chr12 507908 508212 -143278243 + AluJo SINE Alu 5 305 -7 716 187 8 22 chr12 509148 509282 -143277173 - FLAM_A SINE Alu 0 133 2 243 296 0 61 chr12 509506 509621 -143276834 - L2 LINE L2 -1313 2001 1894 2565 43 0 7 chr12 509852 510154 -143276301 - AluY SINE Alu -11 300 1 398 287 34 40 chr12 510220 510404 -143276051 + MIR3 SINE MIR 8 191 -17 481 217 104 0 chr12 512289 512404 -143274051 - MIR3 SINE MIR -9 199 73 927 218 0 0 chr12 512654 512824 -143273631 + FAM SINE Alu 1 170 -5 1791 193 0 7 chr12 512837 513137 -143273318 - AluJb SINE Alu -2 310 13 1887 157 0 4 chr12 513354 513635 -143272820 + AluJb SINE Alu 1 280 -32 340 318 121 8 chr12 513652 513784 -143272671 - MIR SINE MIR -40 222 76 376 198 128 116 chr12 514367 514539 -143271916 + MER5B DNA MER1_type 1 174 -4 22 0 0 0 chr12 514732 514754 -143271701 + AT_rich Low_complexity Low_complexity 1 22 0 281 210 32 16 chr12 515531 515593 -143270862 - MER5B DNA MER1_type 0 178 116 230 317 12 0 chr12 515594 515676 -143270779 + L1ME2 LINE L1 6072 6154 -10 6645 169 67 7 chr12 515702 516142 -143270313 + L1MCa LINE L1 30 442 -5984 2292 115 3 0 chr12 516142 516446 -143270009 - AluSg SINE Alu -5 305 1 6645 169 67 7 chr12 516446 517371 -143269084 + L1MCa LINE L1 442 1477 -4949 2388 119 0 0 chr12 517371 517681 -143268774 + AluSx SINE Alu 2 311 -1 1226 164 37 23 chr12 517692 517906 -143268549 + AluJb SINE Alu 82 298 -14 322 111 99 49 chr12 517909 517990 -143268465 + L1MCa LINE L1 1471 1555 -4871 232 162 0 0 chr12 518006 518043 -143268412 + Alu SINE Alu 11 47 -255 2436 111 95 16 chr12 518043 518544 -143267911 + L1MCa LINE L1 1560 2179 -4247 1097 184 17 63 chr12 518548 518787 -143267668 + AluJo SINE Alu 85 312 0 9985 210 49 18 chr12 518803 518905 -143267550 + L1MCa LINE L1 2197 2294 -4319 2821 58 29 16 chr12 518905 519281 -143267174 + L1PA8 LINE L1 5791 6171 -1 9985 210 49 18 chr12 519281 520394 -143266061 + L1MCa LINE L1 2294 3371 -3242 1844 149 35 3 chr12 520394 520682 -143265773 + AluJb SINE Alu 1 297 -15 9985 210 49 18 chr12 520682 521271 -143265184 + L1MCa LINE L1 3371 3940 -2673 2070 152 10 0 chr12 521271 521568 -143264887 - AluJb SINE Alu -12 300 1 9985 210 49 18 chr12 521568 521713 -143264742 + L1MCa LINE L1 3940 4079 -2534 2224 113 7 13 chr12 521713 522022 -143264433 + AluSg SINE Alu 1 307 -3 9985 210 49 18 chr12 522022 523480 -143262975 + L1MCa LINE L1 4079 5894 -719 2248 103 0 57 chr12 523929 524260 -143262195 + AluJb SINE Alu 1 312 0 574 290 122 9 chr12 524975 525196 -143261259 - MIR SINE MIR -3 259 14 431 292 260 0 chr12 525504 525658 -143260797 + MER91A DNA MER1_type 3 196 0 2439 139 107 61 chr12 526218 526267 -143260188 - L1MB5 LINE L1 -6 6168 6123 2226 109 3 0 chr12 526267 526560 -143259895 + AluSx SINE Alu 9 302 -10 2439 139 107 61 chr12 526560 526820 -143259635 - L1MB5 LINE L1 -51 6123 5877 1261 165 169 0 chr12 526820 527075 -143259380 - AluJo SINE Alu -3 299 2 2387 62 36 7 chr12 527080 527384 -143259071 - AluSp SINE Alu 0 313 1 2439 139 107 61 chr12 527384 527626 -143258829 - L1MB5 LINE L1 -300 5874 5584 300 234 13 65 chr12 529623 529700 -143256755 + L2 LINE L2 3241 3313 0 404 243 88 7 chr12 529721 529869 -143256586 - Charlie8 DNA MER1_type -2213 204 45 980 141 18 41 chr12 530076 530246 -143256209 - FRAM SINE Alu 0 166 1 2149 109 0 23 chr12 530807 531110 -143255345 - AluSx SINE Alu -10 302 7 1291 126 0 0 chr12 531372 531546 -143254909 + FRAM SINE Alu 1 170 -6 238 285 115 55 chr12 531609 531774 -143254681 + MER5B DNA MER1_type 1 175 -3 * 402 236 61 88 chr12 531630 531778 -143254677 - MER5A DNA MER1_type -32 157 14 1892 153 7 19 chr12 532689 532996 -143253459 - AluJo SINE Alu -5 307 5 212 296 0 0 chr12 533396 533450 -143253005 + MIR SINE MIR 91 144 -64 204 186 103 72 chr12 533667 533764 -143252691 + L2 LINE L2 1902 2001 -1313 2258 117 0 0 chr12 533774 534072 -143252383 + AluSx SINE Alu 1 298 -14 859 126 16 0 chr12 534116 534243 -143252212 + AluJb SINE Alu 177 305 -7 1022 173 6 0 chr12 534410 534572 -143251883 - AluSg/x SINE Alu -21 289 127 560 167 20 10 chr12 534572 534674 -143251781 + AluJo/FRAM SINE Alu 203 305 -7 2284 88 7 10 chr12 534836 535133 -143251322 - AluSq SINE Alu -17 296 1 441 272 190 6 chr12 536159 536317 -143250138 - MIR3 SINE MIR -2 206 20 2674 52 0 0 chr12 536568 536877 -143249578 - AluY SINE Alu -2 309 1 894 211 52 9 chr12 536884 537116 -143249339 - L1MC3 LINE L1 0 7785 7544 1351 183 0 45 chr12 538218 538464 -143247991 - AluJo SINE Alu -18 294 60 875 169 33 0 chr12 540773 540956 -143245499 - L1MB7 LINE L1 -60 6124 5936 1119 136 60 0 chr12 540966 541150 -143245305 - AluJ SINE Alu 0 312 118 211 256 45 34 chr12 541315 541491 -143244964 + CT-rich Low_complexity Low_complexity 1 178 0 204 227 64 29 chr12 541641 541813 -143244642 + CT-rich Low_complexity Low_complexity 1 178 0 239 249 40 40 chr12 542217 542394 -143244061 + CT-rich Low_complexity Low_complexity 1 177 0 3028 132 17 33 chr12 542749 543271 -143243184 - MER41A LTR ERV1 -40 514 1 729 148 16 16 chr12 543294 543416 -143243039 - AluJ SINE Alu -188 124 3 1527 158 129 21 chr12 543416 543722 -143242733 - L1MB7 LINE L1 -341 5824 5486 2696 43 0 0 chr12 543722 544026 -143242429 - AluY SINE Alu -7 304 1 1527 158 129 21 chr12 544026 544070 -143242385 - L1MB7 LINE L1 -679 5486 5448 969 211 59 62 chr12 544248 544276 -143242179 + MIR SINE MIR 8 35 -227 2201 111 37 0 chr12 544276 544574 -143241881 + AluSx SINE Alu 1 309 -3 969 211 59 62 chr12 544574 544704 -143241751 + MIR SINE MIR 35 167 -95 2101 80 10 47 chr12 544704 545026 -143241429 - AluSc SINE Alu 0 309 1 969 211 59 62 chr12 545026 545122 -143241333 + MIR SINE MIR 167 262 0 288 282 59 0 chr12 545166 545251 -143241204 - MIR SINE MIR -70 192 103 1113 239 104 51 chr12 545339 545385 -143241070 - L2 LINE L2 -54 3259 3217 2489 59 0 29 chr12 545385 545692 -143240763 + AluY SINE Alu 1 298 -13 1113 239 104 51 chr12 545692 546059 -143240396 - L2 LINE L2 -96 3217 2824 452 273 18 0 chr12 546079 546189 -143240266 + MER94 DNA DNA 3 114 -20 1579 252 159 42 chr12 546193 546867 -143239588 - L2 LINE L2 -513 2801 2049 501 281 96 11 chr12 547446 547624 -143238831 + MIR SINE MIR 12 204 -58 357 302 40 13 chr12 547662 547794 -143238661 - MIR SINE MIR -74 134 7 1084 167 81 102 chr12 547818 547952 -143238503 + MER2 DNA MER2_type 1 136 -209 1579 152 54 11 chr12 547952 548229 -143238226 - AluJo SINE Alu -23 289 1 1084 167 81 102 chr12 548229 548429 -143238026 + MER2 DNA MER2_type 136 328 -17 879 58 0 0 chr12 550219 550323 -143236132 + AluSg/x SINE Alu 180 283 -27 267 293 49 0 chr12 551261 551343 -143235112 - MER5C DNA MER1_type -201 123 38 2672 149 33 33 chr12 551700 552182 -143234273 + L1MB3 LINE L1 5650 6134 -49 1850 128 13 39 chr12 552182 552494 -143233961 + AluJb SINE Alu 1 304 -8 2672 149 33 33 chr12 552494 552533 -143233922 + L1MB3 LINE L1 6133 6171 -12 315 298 26 67 chr12 553083 553239 -143233216 + MIR SINE MIR 2 150 -65 2228 107 3 3 chr12 553310 553609 -143232846 + AluSg SINE Alu 1 299 -11 228 111 0 0 chr12 554169 554205 -143232250 + (A)n Simple_repeat Simple_repeat 1 36 0 600 254 57 43 chr12 554206 554415 -143232040 + MIR SINE MIR 50 261 -1 2317 91 0 0 chr12 554616 554938 -143231517 - AluSx SINE Alu 0 322 1 222 227 15 76 chr12 555714 555780 -143230675 + L2 LINE L2 3201 3262 -10 207 0 0 0 chr12 556198 556221 -143230234 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 186 43 0 0 chr12 556222 556245 -143230210 + (ATG)n Simple_repeat Simple_repeat 2 24 0 1524 179 100 0 chr12 556450 556610 -143229845 - AluJb SINE Alu -4 308 165 219 36 0 0 chr12 556610 556638 -143229817 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1524 179 100 0 chr12 556638 556757 -143229698 - AluJb SINE Alu -147 165 1 327 257 50 8 chr12 557606 557724 -143228731 + MIR SINE MIR 2 128 -134 22 0 0 0 chr12 557733 557755 -143228700 + AT_rich Low_complexity Low_complexity 1 22 0 1067 150 6 39 chr12 557739 557919 -143228536 - FAM SINE Alu -1 174 1 243 305 0 0 chr12 559169 559228 -143227227 + MIR SINE MIR 203 261 -1 411 299 71 0 chr12 560145 560272 -143226183 + MIR SINE MIR 81 216 -46 217 321 0 0 chr12 560712 560765 -143225690 + L2 LINE L2 3207 3259 -13 1577 187 47 17 chr12 560896 561195 -143225260 + AluJo SINE Alu 1 308 -4 414 288 153 6 chr12 561306 561469 -143224986 - MIR SINE MIR -10 252 66 751 145 0 83 chr12 561490 561635 -143224820 - FLAM_C SINE Alu 0 133 1 1762 211 106 12 chr12 561901 562327 -143224128 - MER31B LTR ERV1 0 466 1 223 269 137 58 chr12 563100 563290 -143223165 + MIR SINE MIR 14 214 -37 451 326 62 26 chr12 563624 563817 -143222638 + MIR3 SINE MIR 2 201 -7 28 0 0 0 chr12 566004 566032 -143220423 + AT_rich Low_complexity Low_complexity 1 28 0 791 197 0 0 chr12 566043 566175 -143220280 - FLAM_A SINE Alu 0 133 2 327 333 180 0 chr12 566245 566395 -143220060 - MIR SINE MIR -3 259 83 433 229 93 7 chr12 566483 566623 -143219832 - MER103 DNA DNA -3 163 12 1402 181 120 18 chr12 566810 567086 -143219369 - AluJo SINE Alu -8 304 1 191 345 0 8 chr12 567090 567183 -143219272 - MIR SINE MIR -63 145 57 21 0 0 0 chr12 567696 567717 -143218738 + AT_rich Low_complexity Low_complexity 1 21 0 1893 151 0 13 chr12 567804 568115 -143218340 + AluJb SINE Alu 1 307 -5 237 278 56 95 chr12 568225 568351 -143218104 - MIR3 SINE MIR -39 169 49 186 213 307 0 chr12 568478 568553 -143217902 - MIR SINE MIR -102 160 63 379 68 0 123 chr12 569087 569160 -143217295 - L1MB8 LINE L1 -6 6172 6109 1607 188 7 0 chr12 569160 569436 -143217019 + AluJo SINE Alu 1 278 -34 189 0 0 0 chr12 569442 569463 -143216992 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 518 331 69 23 chr12 569934 570261 -143216194 - L2 LINE L2 -181 3091 2727 2504 65 0 0 chr12 570261 570571 -143215884 - AluY SINE Alu 0 311 2 518 331 69 23 chr12 570571 570706 -143215749 - L2 LINE L2 -545 2727 2600 417 269 19 0 chr12 570777 570885 -143215570 + MIR3 SINE MIR 77 186 -22 213 108 0 0 chr12 571361 571398 -143215057 + (CACCC)n Simple_repeat Simple_repeat 3 39 0 619 209 9 0 chr12 573985 574100 -143212355 + MER91A DNA MER1_type 1 116 -80 255 245 21 21 chr12 574961 575055 -143211400 + G-rich Low_complexity Low_complexity 1 94 0 322 144 0 89 chr12 575056 575236 -143211219 + (GGAGA)n Simple_repeat Simple_repeat 4 167 0 185 155 0 99 chr12 575239 575381 -143211074 + GA-rich Low_complexity Low_complexity 4 131 0 420 301 11 19 chr12 575415 575633 -143210822 + G-rich Low_complexity Low_complexity 1 216 0 245 331 18 31 chr12 575792 575955 -143210500 + CT-rich Low_complexity Low_complexity 1 161 0 545 233 41 7 chr12 576175 576321 -143210134 - MIR3 SINE MIR -38 170 20 1227 219 35 13 chr12 576502 576812 -143209643 + L1MA4A LINE L1 5985 6301 -2 297 306 306 0 chr12 576895 577065 -143209390 + MIR SINE MIR 9 230 -32 * 338 298 173 42 chr12 577029 577220 -143209235 - MIR SINE MIR -12 250 35 1875 129 43 20 chr12 577947 578250 -143208205 + AluJo SINE Alu 1 310 -2 195 200 25 0 chr12 578261 578301 -143208154 - MIR3 SINE MIR -52 156 116 713 328 9 4 chr12 578546 578775 -143207680 + MIR SINE MIR 23 252 -10 307 351 26 9 chr12 578777 578891 -143207564 + MER91B DNA MER1_type 75 190 0 1005 191 0 0 chr12 579660 579838 -143206617 + AluJb SINE Alu 135 312 0 396 0 0 0 chr12 581612 581656 -143204799 + (CA)n Simple_repeat Simple_repeat 2 45 0 613 195 88 13 chr12 582266 582425 -143204030 - MIR SINE MIR -66 196 26 231 167 0 0 chr12 583051 583093 -143203362 + GA-rich Low_complexity Low_complexity 1 42 0 2932 182 30 79 chr12 583748 583828 -143202627 - L1MB7 LINE L1 -16 6168 6086 2737 23 0 0 chr12 583828 584137 -143202318 + AluY SINE Alu 1 309 -2 2932 182 30 79 chr12 584137 584215 -143202240 - L1MB7 LINE L1 -98 6086 6006 2216 128 0 0 chr12 584215 584527 -143201928 + AluSx SINE Alu 1 312 0 2932 182 30 79 chr12 584527 585092 -143201363 - L1MB7 LINE L1 -178 6006 5492 2397 84 3 0 chr12 585092 585401 -143201054 - AluY SINE Alu 0 311 2 2932 182 30 79 chr12 585401 585559 -143200896 - L1MB7 LINE L1 -692 5492 5328 489 329 0 13 chr12 585622 585780 -143200675 - MIR3 SINE MIR -14 194 39 315 315 113 13 chr12 586232 586413 -143200042 - MIR SINE MIR -41 221 19 344 280 192 0 chr12 588211 588336 -143198119 - L2 LINE L2 -1 3271 3123 189 289 78 56 chr12 588885 588975 -143197480 + MIR SINE MIR 96 187 -75 426 269 47 23 chr12 589679 589839 -143196616 - MIR SINE MIR -56 206 41 272 290 187 0 chr12 590427 590534 -143195921 - MIR SINE MIR -108 154 28 182 370 40 0 chr12 592943 593043 -143193412 - L2 LINE L2 -30 3242 3139 359 234 0 26 chr12 594119 594196 -143192259 - MER5A DNA MER1_type -99 90 16 242 285 153 7 chr12 595558 595695 -143190760 + MIR3 SINE MIR 34 190 -18 296 311 10 19 chr12 595912 596015 -143190440 - MER91A DNA MER1_type -29 167 66 339 157 0 0 chr12 596794 596864 -143189591 + (TGGA)n Simple_repeat Simple_repeat 4 73 0 190 103 0 0 chr12 596914 596943 -143189512 + MIR SINE MIR 96 124 -84 2030 134 3 10 chr12 597043 597348 -143189107 + AluSx SINE Alu 1 303 -9 399 251 36 36 chr12 597358 597553 -143188902 - Charlie7 DNA MER1_type 0 2612 2418 23 0 0 0 chr12 598196 598219 -143188236 + GC_rich Low_complexity Low_complexity 1 23 0 185 341 73 49 chr12 599582 599705 -143186750 + L3b LINE CR1 1439 1564 -19 594 301 30 0 chr12 601961 602127 -143184328 - MIR SINE MIR -12 250 80 1318 92 0 0 chr12 602170 602343 -143184112 - AluSq SINE Alu -7 306 134 2304 82 0 3 chr12 602343 602646 -143183809 - AluSx SINE Alu -10 302 1 1024 171 0 17 chr12 602747 602928 -143183527 + AluSg/x SINE Alu 135 312 0 1978 94 45 3 chr12 603271 603559 -143182896 + AluSq SINE Alu 1 300 -13 562 103 26 0 chr12 603571 603672 -143182783 + AluSg/x SINE Alu 209 311 0 2013 212 23 13 chr12 603699 604091 -143182364 + MSTD LTR MaLR 1 396 0 828 214 12 0 chr12 605803 605976 -143180479 - AluJo SINE Alu -1 311 137 1668 150 17 0 chr12 606425 606725 -143179730 + MER47A DNA MER2_type 58 362 -4 234 62 0 0 chr12 606736 606768 -143179687 + (TA)n Simple_repeat Simple_repeat 2 33 0 634 99 0 0 chr12 606770 606851 -143179604 - AluSg/x SINE Alu -69 243 163 319 281 174 0 chr12 606852 606971 -143179484 - MIR SINE MIR -114 148 9 356 224 0 0 chr12 606971 607038 -143179417 + MER5A DNA MER1_type 1 67 -122 862 141 7 7 chr12 607041 607176 -143179279 - AluJo SINE Alu -177 135 1 22 0 0 0 chr12 607188 607210 -143179245 + AT_rich Low_complexity Low_complexity 1 22 0 1537 191 113 33 chr12 607252 607677 -143178778 + LTR2B LTR ERV1 32 490 0 1543 162 19 15 chr12 607678 607937 -143178518 - AluJo SINE Alu -52 260 1 263 303 53 0 chr12 607938 608014 -143178441 - MIR SINE MIR -171 91 12 915 210 119 113 chr12 608725 608802 -143177653 + MER4C LTR ERV1 1 76 -389 352 0 20 20 chr12 608802 608851 -143177604 + (CAAAA)n Simple_repeat Simple_repeat 5 53 0 915 210 119 113 chr12 608851 609235 -143177220 + MER4C LTR ERV1 76 465 0 189 74 0 0 chr12 609588 609615 -143176840 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2164 118 3 0 chr12 609631 609919 -143176536 + AluSx SINE Alu 7 295 -17 768 178 0 0 chr12 610118 610298 -143176157 + (TG)n Simple_repeat Simple_repeat 1 180 0 738 167 0 0 chr12 610351 610531 -143175924 + (TG)n Simple_repeat Simple_repeat 1 180 0 304 220 89 48 chr12 611337 611490 -143174965 - MIR SINE MIR -59 149 1 207 271 136 0 chr12 611509 611568 -143174887 + L2 LINE L2 3206 3272 0 385 296 0 0 chr12 611570 611746 -143174709 + (CATG)n Simple_repeat Simple_repeat 2 177 0 358 299 0 0 chr12 611809 611986 -143174469 + (CATG)n Simple_repeat Simple_repeat 4 180 0 * 401 301 0 0 chr12 611948 612177 -143174278 + (TGAA)n Simple_repeat Simple_repeat 1 229 0 303 322 0 0 chr12 612220 612397 -143174058 + (TGAA)n Simple_repeat Simple_repeat 2 178 0 * 391 299 0 0 chr12 612280 612457 -143173998 + (CATG)n Simple_repeat Simple_repeat 4 180 0 251 233 192 17 chr12 612963 613083 -143173372 + MIR SINE MIR 18 158 -104 234 270 95 7 chr12 613115 613252 -143173203 + L1ME4a LINE L1 5946 6094 -27 1085 181 42 23 chr12 613457 613673 -143172782 + AluJo SINE Alu 1 220 -92 328 100 0 0 chr12 613673 613723 -143172732 + AluSq/x SINE Alu 86 135 -168 2175 122 3 0 chr12 613723 614026 -143172429 + AluSx SINE Alu 1 304 -8 2023 93 41 7 chr12 614052 614342 -143172113 + AluSg SINE Alu 5 304 -6 250 53 0 126 chr12 614674 614769 -143171686 + (GGGAA)n Simple_repeat Simple_repeat 2 84 0 184 214 0 24 chr12 614899 614941 -143171514 - L2 LINE L2 -1 3312 3272 275 146 21 0 chr12 615239 615287 -143171168 - MER45 DNA AcHobo -14 1567 1519 375 219 0 0 chr12 615331 615413 -143171042 - MER45 DNA AcHobo -918 122 41 324 289 79 9 chr12 615836 615950 -143170505 - MIR3 SINE MIR -53 155 34 183 275 242 17 chr12 617012 617132 -143169323 + L2 LINE L2 3036 3182 -90 209 117 96 0 chr12 617353 617447 -143169008 + GA-rich Low_complexity Low_complexity 2 104 0 555 295 161 9 chr12 617621 617838 -143168617 - MIR SINE MIR 0 262 13 463 266 47 107 chr12 618035 618399 -143168056 + L1MC4a LINE L1 5463 5804 -317 305 249 102 51 chr12 618446 618643 -143167812 + L1MC4a LINE L1 5789 5995 -1813 336 127 18 0 chr12 618734 618789 -143167666 - U7 snRNA snRNA -7 56 1 264 305 78 31 chr12 618899 619027 -143167428 - L2 LINE L2 -1 3271 3138 582 131 9 47 chr12 619303 619410 -143167045 - AluJo SINE Alu -178 134 32 506 300 105 5 chr12 621274 621464 -143164991 + MIR SINE MIR 16 224 -38 2255 97 3 10 chr12 621618 621916 -143164539 + AluSq SINE Alu 1 296 -17 343 321 93 50 chr12 621996 622339 -143164116 + L1MC1 LINE L1 3014 3371 -2775 1813 126 16 0 chr12 622663 622918 -143163537 + AluJb SINE Alu 29 287 -25 435 155 0 0 chr12 622918 623002 -143163453 + GA-rich Low_complexity Low_complexity 1 84 0 204 40 0 0 chr12 623020 623045 -143163410 + (CAG)n Simple_repeat Simple_repeat 2 26 0 4645 190 26 68 chr12 623124 623556 -143162899 + L1MC1 LINE L1 3973 4422 -1911 304 50 0 100 chr12 623556 623616 -143162839 + L1MA4A LINE L1 6244 6297 -6 4645 190 26 68 chr12 623616 623705 -143162750 + L1MC1 LINE L1 4422 4513 -1820 741 176 0 63 chr12 623705 623847 -143162608 + FLAM_C SINE Alu 1 133 0 4645 190 26 68 chr12 623847 624692 -143161763 + L1MC1 LINE L1 4513 5236 -1097 2035 98 79 0 chr12 624692 624969 -143161486 + AluSp SINE Alu 1 299 -14 4645 190 26 68 chr12 624969 625461 -143160994 + L1MC1 LINE L1 5236 5747 -586 1504 189 17 26 chr12 625461 625759 -143160696 + L1MC1 LINE L1 6035 6333 0 1999 142 7 7 chr12 625840 626142 -143160313 + AluJb SINE Alu 1 302 -10 732 265 33 0 chr12 626406 626587 -143159868 + MIR SINE MIR 76 262 0 365 205 71 54 chr12 627812 627908 -143158547 + L1ME4a LINE L1 5986 6086 -35 2067 131 3 0 chr12 627908 628198 -143158257 - AluJb SINE Alu -21 291 1 365 205 71 54 chr12 628198 628213 -143158242 + L1ME4a LINE L1 6086 6099 -22 1982 107 43 7 chr12 628298 628578 -143157877 + AluSq SINE Alu 1 290 -23 312 292 111 21 chr12 628742 628886 -143157569 - MIR SINE MIR -76 186 30 2053 115 10 13 chr12 629470 629775 -143156680 + AluSx SINE Alu 1 304 -8 414 0 0 0 chr12 629852 629898 -143156557 + (TG)n Simple_repeat Simple_repeat 2 47 0 829 181 18 41 chr12 629898 630058 -143156397 - AluJb SINE Alu -29 283 126 32 43 0 0 chr12 630415 630461 -143155994 + AT_rich Low_complexity Low_complexity 1 46 0 2467 61 3 10 chr12 630463 630774 -143155681 + AluY SINE Alu 1 309 -2 2127 112 0 44 chr12 630779 631100 -143155355 + AluSx SINE Alu 1 307 -5 4023 171 105 20 chr12 631350 632027 -143154428 - L1MB8 LINE L1 -15 6163 5545 1787 179 3 16 chr12 632027 632334 -143154121 - AluJo SINE Alu -9 303 1 4023 171 105 20 chr12 632334 632856 -143153599 - L1MB8 LINE L1 -633 5545 5069 2249 133 0 0 chr12 632856 633158 -143153297 - AluSx SINE Alu -10 302 1 4023 171 105 20 chr12 633158 633439 -143153016 - L1MB8 LINE L1 -1109 5069 4542 2459 75 0 0 chr12 633553 633860 -143152595 + AluSx SINE Alu 1 307 -5 292 287 49 25 chr12 633973 634095 -143152360 + HAL1 LINE L1 338 462 -2045 403 276 60 0 chr12 634095 634211 -143152244 + MER5C DNA MER1_type 1 123 -201 182 231 0 0 chr12 634372 634411 -143152044 + MER5C DNA MER1_type 286 324 0 234 306 47 0 chr12 634467 634552 -143151903 + HAL1 LINE L1 549 637 -1870 978 120 56 0 chr12 634624 634766 -143151689 + FRAM SINE Alu 14 163 -13 226 298 0 50 chr12 634781 634902 -143151553 + HAL1 LINE L1 684 798 -1709 349 222 228 26 chr12 635032 635221 -143151234 + HAL1 LINE L1 795 1021 -1486 32 26 0 0 chr12 635227 635266 -143151189 + AT_rich Low_complexity Low_complexity 1 39 0 687 121 0 0 chr12 635269 635368 -143151087 - AluJ/FLAM SINE Alu -212 100 2 1089 271 155 25 chr12 635382 636009 -143150446 + HAL1 LINE L1 1032 1739 -768 237 239 15 0 chr12 636243 636310 -143150145 + MLT1K LTR MaLR 511 578 -10 213 194 311 19 chr12 636324 636427 -143150028 - MER5A DNA MER1_type -13 176 44 * 422 258 200 0 chr12 636339 636459 -143149996 + MER5A DNA MER1_type 46 189 0 267 31 0 0 chr12 636549 636581 -143149874 + (ATG)n Simple_repeat Simple_repeat 3 34 0 1068 228 57 24 chr12 637559 637805 -143148650 - MIR SINE MIR 0 262 9 341 233 105 12 chr12 638057 638143 -143148312 + MIR3 SINE MIR 74 167 -41 2608 58 0 7 chr12 638687 638997 -143147458 + AluY SINE Alu 3 310 -1 1041 99 0 21 chr12 639019 639161 -143147294 + AluJb SINE Alu 163 301 -11 183 284 119 64 chr12 639169 639278 -143147177 - MIR3 SINE MIR -93 115 1 2441 92 0 3 chr12 639924 640227 -143146228 - AluSq SINE Alu -6 307 6 2004 138 33 13 chr12 640359 640833 -143145622 - AluSx SINE Alu 0 312 1 206 269 0 19 chr12 640858 640910 -143145545 - MIR3 SINE MIR -23 185 135 1079 262 120 18 chr12 641053 641495 -143144960 + MLT1J LTR MaLR 18 504 -7 231 259 259 19 chr12 642168 642330 -143144125 - MIR3 SINE MIR -3 205 5 2146 132 0 3 chr12 642523 642819 -143143636 + AluSx SINE Alu 1 295 -17 2589 64 0 6 chr12 642821 643134 -143143321 + AluY SINE Alu 1 311 0 191 244 56 78 chr12 643228 643318 -143143137 - MIR SINE MIR -102 160 73 2261 92 3 3 chr12 644516 644800 -143141655 + AluSp SINE Alu 13 296 -17 2406 75 7 0 chr12 646121 646413 -143140042 + AluSx SINE Alu 1 294 -18 351 254 6 51 chr12 647410 647587 -143138868 + G-rich Low_complexity Low_complexity 2 170 0 331 327 19 9 chr12 647655 647762 -143138693 - MIR3 SINE MIR -6 202 95 594 235 95 34 chr12 648976 649155 -143137300 + MIR SINE MIR 3 192 -70 210 339 0 0 chr12 649475 649531 -143136924 + MIR3 SINE MIR 104 159 -49 2249 106 0 0 chr12 649815 650127 -143136328 - AluSx SINE Alu 0 312 1 1983 162 6 19 chr12 650365 650730 -143135725 + AluJo SINE Alu 3 363 0 2337 105 7 0 chr12 650738 651043 -143135412 + AluSc SINE Alu 3 309 0 2044 122 31 0 chr12 651049 651337 -143135118 + AluSg1 SINE Alu 1 297 -12 2409 67 40 3 chr12 651337 651636 -143134819 + AluY SINE Alu 1 310 -1 25 0 0 0 chr12 651978 652003 -143134452 + AT_rich Low_complexity Low_complexity 1 25 0 2167 140 0 6 chr12 652948 653262 -143133193 + AluJo SINE Alu 1 312 0 202 281 0 31 chr12 653647 653711 -143132744 - L2 LINE L2 -100 3213 3152 2312 98 3 3 chr12 653723 654020 -143132435 + AluSx SINE Alu 1 297 -15 2322 103 0 0 chr12 654023 654323 -143132132 + AluSx SINE Alu 1 300 -12 356 326 96 53 chr12 654375 654788 -143131667 - L2 LINE L2 -237 3035 2608 767 223 55 103 chr12 655817 656011 -143130444 + MIR SINE MIR 3 182 -80 1743 193 3 0 chr12 656011 656296 -143130159 + AluJo SINE Alu 6 291 -21 767 223 55 103 chr12 656296 656374 -143130081 + MIR SINE MIR 182 262 0 226 255 32 43 chr12 656659 656753 -143129702 - L2 LINE L2 -211 3061 2969 1023 133 60 0 chr12 657001 657152 -143129303 + AluSg/x SINE Alu 136 295 -15 4014 141 14 14 chr12 657744 658377 -143128078 + MER41B LTR ERV1 1 633 -2 654 194 32 67 chr12 658391 658581 -143127874 - MIR SINE MIR -62 146 8 1279 129 58 45 chr12 658705 658809 -143127646 - MER30 DNA MER1_type 0 230 129 2308 89 24 0 chr12 658809 659100 -143127355 + AluSp SINE Alu 1 298 -15 234 0 0 0 chr12 659100 659126 -143127329 + (TA)n Simple_repeat Simple_repeat 2 27 0 1279 129 58 45 chr12 659126 659244 -143127211 - MER30 DNA MER1_type -100 130 4 2214 102 3 10 chr12 659538 659880 -143126575 - AluSx SINE Alu 0 312 1 2333 61 3 10 chr12 660547 660864 -143125591 - AluSc SINE Alu 0 309 1 208 263 23 128 chr12 661614 661747 -143124708 + L2 LINE L2 139 257 -3057 2078 122 7 7 chr12 662419 662714 -143123741 + AluSx SINE Alu 1 295 -17 2019 141 14 0 chr12 662737 663027 -143123428 + AluSx SINE Alu 1 294 -18 1968 112 42 3 chr12 663477 663762 -143122693 - AluSg SINE Alu -14 296 1 619 204 0 53 chr12 664114 664246 -143122209 - FLAM_C SINE Alu -16 127 3 2349 94 10 0 chr12 664257 664554 -143121901 - AluSq SINE Alu -13 300 1 2581 187 20 25 chr12 664583 664996 -143121459 + L1MB4 LINE L1 4789 5202 -978 2179 110 0 7 chr12 664996 665296 -143121159 + AluSx SINE Alu 1 298 -14 2372 106 3 0 chr12 665298 665644 -143120811 + AluSp SINE Alu 1 313 0 2581 187 20 25 chr12 665644 666272 -143120183 + L1MB4 LINE L1 5203 5830 -350 2369 96 0 0 chr12 666272 666563 -143119892 + AluSg SINE Alu 1 291 -19 2390 100 0 3 chr12 666563 666874 -143119581 + AluSg SINE Alu 1 310 0 2617 47 0 0 chr12 667618 667918 -143118537 - AluY SINE Alu -11 300 1 351 265 17 0 chr12 668111 668228 -143118227 + L1MC4a LINE L1 5753 5871 -1937 842 195 185 25 chr12 668475 668675 -143117780 - MIR SINE MIR -23 239 8 270 314 10 39 chr12 669455 669557 -143116898 - MIR3 SINE MIR -2 206 108 1437 156 117 12 chr12 669721 670001 -143116454 - AluSx SINE Alu 0 307 1 2438 49 0 16 chr12 670762 671066 -143115389 + AluY SINE Alu 1 299 -12 407 271 62 16 chr12 671239 671368 -143115087 + MIR SINE MIR 20 154 -108 2033 89 11 0 chr12 671461 671730 -143114725 - AluSq SINE Alu -40 273 2 266 192 29 70 chr12 672056 672228 -143114227 + (CCCG)n Simple_repeat Simple_repeat 4 168 0 250 181 157 72 chr12 672724 672807 -143113648 - MIR SINE MIR -70 192 103 180 278 150 38 chr12 673097 673230 -143113225 + L2 LINE L2 3121 3268 -45 284 236 0 0 chr12 673362 673417 -143113038 - MIR SINE MIR 0 262 208 453 194 218 8 chr12 673425 673549 -143112906 - MER5A DNA MER1_type 0 189 40 419 205 41 0 chr12 673557 673652 -143112803 - MIR SINE MIR -50 212 114 269 250 27 71 chr12 674133 674245 -143112210 - L2 LINE L2 -613 2701 2595 523 269 0 8 chr12 674416 674535 -143111920 + MIR SINE MIR 33 150 -112 282 243 96 64 chr12 674683 674856 -143111599 - MIR SINE MIR -62 146 19 726 185 147 13 chr12 676909 677066 -143109389 - MER5A DNA MER1_type -11 178 1 251 267 158 0 chr12 677090 677210 -143109245 + MIR SINE MIR 47 185 -77 2240 95 3 17 chr12 677285 677581 -143108874 - AluSq SINE Alu -21 292 1 214 392 75 22 chr12 677947 678174 -143108281 + L2 LINE L2 2807 3045 -227 513 47 0 0 chr12 678174 678238 -143108217 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 2514 72 13 0 chr12 678245 678549 -143107906 - AluSx SINE Alu -4 308 1 325 175 16 16 chr12 678692 678755 -143107700 + L1MC4 LINE L1 6641 6703 -1339 808 222 124 29 chr12 678827 679277 -143107178 - L1ME4a LINE L1 -1 6120 5628 1736 139 9 73 chr12 679283 679599 -143106856 - AluSx SINE Alu -15 297 2 735 120 9 0 chr12 679620 679728 -143106727 + AluSg SINE Alu 2 110 -200 3710 176 33 65 chr12 679918 680779 -143105676 - L1MB4 LINE L1 -41 6139 5252 221 0 35 0 chr12 680779 680808 -143105647 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3710 176 33 65 chr12 680808 680974 -143105481 - L1MB4 LINE L1 -928 5252 5082 2392 76 3 7 chr12 680974 681276 -143105179 - AluSg SINE Alu -9 301 1 3710 176 33 65 chr12 681276 681529 -143104926 - L1MB4 LINE L1 -1098 5082 4888 23 0 0 0 chr12 681786 681809 -143104646 + AT_rich Low_complexity Low_complexity 1 23 0 2392 97 7 0 chr12 681874 682184 -143104271 - AluSx SINE Alu 0 312 1 3528 25 7 0 chr12 682203 682611 -143103844 - L1PA5 LINE L1 -1 6153 5743 359 288 55 20 chr12 682749 682895 -143103560 + LTR16C LTR ERVL 247 397 -94 1470 150 0 67 chr12 682929 683037 -143103418 - AluJb SINE Alu -76 236 122 2395 69 3 0 chr12 683037 683325 -143103130 - AluY SINE Alu -22 289 1 1470 150 0 67 chr12 683325 683469 -143102986 - AluJb SINE Alu -190 122 1 570 200 50 0 chr12 683800 683920 -143102535 - L1MB7 LINE L1 -43 6141 6016 1192 201 42 113 chr12 683924 684333 -143102122 - MER21B LTR ERV1 -466 397 18 2363 100 0 19 chr12 684333 684644 -143101811 - AluSg SINE Alu -5 305 1 270 0 0 0 chr12 684644 684674 -143101781 + (T)n Simple_repeat Simple_repeat 1 30 0 203 231 15 15 chr12 684685 684750 -143101705 + T-rich Low_complexity Low_complexity 2 66 0 25 0 0 0 chr12 684751 684776 -143101679 + AT_rich Low_complexity Low_complexity 1 25 0 2413 102 0 10 chr12 684778 685092 -143101363 - AluSx SINE Alu -1 311 1 1081 123 31 44 chr12 685104 685215 -143101240 - L1MA4 LINE L1 -16 6284 6173 2041 162 0 0 chr12 685215 685524 -143100931 - AluJo SINE Alu -3 309 1 1081 123 31 44 chr12 685524 685640 -143100815 - L1MA4 LINE L1 -127 6173 6060 1142 190 0 74 chr12 685646 685891 -143100564 - L1MB7 LINE L1 -352 5832 5620 2427 84 0 3 chr12 685891 686190 -143100265 - AluSx SINE Alu -14 298 1 1142 190 0 74 chr12 686190 686256 -143100199 - L1MB7 LINE L1 -564 5620 5551 2707 125 29 7 chr12 686284 686731 -143099724 - MER4C LTR ERV1 -1 464 8 2357 84 3 7 chr12 687118 687415 -143099040 - AluSg SINE Alu -14 296 1 271 246 0 0 chr12 687537 687594 -143098861 - MLT1K LTR MaLR -4 584 528 195 42 0 0 chr12 687619 687643 -143098812 + (A)n Simple_repeat Simple_repeat 1 24 0 301 291 0 0 chr12 687755 687834 -143098621 - MLT1K LTR MaLR -178 410 332 279 77 0 0 chr12 688423 688462 -143097993 - MSTB LTR MaLR 0 426 388 2380 98 0 0 chr12 688465 688761 -143097694 + AluSg SINE Alu 1 296 -14 872 185 17 28 chr12 688769 688947 -143097508 + AluJb SINE Alu 137 312 0 1383 176 105 5 chr12 688951 689280 -143097175 - MSTB LTR MaLR -31 426 4 838 175 0 0 chr12 689352 689478 -143096977 - FLAM_C SINE Alu -17 126 1 2552 70 0 0 chr12 689480 689781 -143096674 - AluSx SINE Alu -11 301 1 1684 171 0 55 chr12 689781 690109 -143096346 - AluJb SINE Alu 0 312 3 569 255 110 57 chr12 690186 690277 -143096178 + MER115 DNA AcHobo 410 495 -198 1995 63 4 0 chr12 690277 690515 -143095940 - AluY SINE Alu -17 294 56 569 255 110 57 chr12 690515 690686 -143095769 + MER115 DNA AcHobo 495 686 -7 232 271 59 35 chr12 691110 691195 -143095260 - MIR SINE MIR -75 187 101 2342 88 0 0 chr12 691221 691515 -143094940 - AluSc SINE Alu -14 295 2 1909 172 0 0 chr12 691520 691810 -143094645 - AluJb SINE Alu -20 292 3 1167 81 64 47 chr12 691821 691971 -143094484 - AluSg/x SINE Alu -18 294 139 2291 108 0 3 chr12 691971 692266 -143094189 - AluSx SINE Alu -18 294 1 1167 81 64 47 chr12 692266 692287 -143094168 - AluSg/x SINE Alu -173 139 120 186 80 0 0 chr12 692288 692313 -143094142 - MIR SINE MIR -154 108 84 331 174 0 111 chr12 692343 692457 -143093998 - MER45A DNA AcHobo 0 178 81 192 286 0 0 chr12 692517 692559 -143093896 - MIR SINE MIR -136 72 31 283 285 191 45 chr12 692705 692731 -143093724 + L2 LINE L2 1528 1549 -1765 720 216 22 50 chr12 692731 692812 -143093643 - MER69A DNA AcHobo -2349 177 95 2212 88 51 0 chr12 692812 693107 -143093348 + AluY SINE Alu 1 310 -1 720 216 22 50 chr12 693107 693206 -143093249 - MER69A DNA AcHobo -2431 95 2 283 285 191 45 chr12 693206 693446 -143093009 + L2 LINE L2 1549 1833 -1481 1401 134 96 193 chr12 693461 694009 -143092446 - LTR36 LTR ERV1 -1 610 123 2192 42 48 31 chr12 694009 694298 -143092157 - AluY SINE Alu -6 305 12 1401 134 96 193 chr12 694298 694345 -143092110 - LTR36 LTR ERV1 -488 123 73 434 214 0 11 chr12 694493 694582 -143091873 + LTR23 LTR ERV1 329 416 -21 413 296 50 25 chr12 695148 695307 -143091148 + MER4B-int LTR ERV1 533 695 -6063 1847 158 31 74 chr12 695582 696030 -143090425 + MER4B-int LTR ERV1 1557 1985 -4346 543 256 0 0 chr12 696053 696229 -143090226 + (CA)n Simple_repeat Simple_repeat 1 176 0 2790 207 46 29 chr12 696229 696942 -143089513 + MER4B-int LTR ERV1 751 2657 -3674 2677 144 58 15 chr12 696942 697408 -143089047 - MER66B LTR ERV1 0 486 1 225 239 0 0 chr12 697408 697454 -143089001 + MER31A LTR ERV1 37 82 -403 226 217 0 0 chr12 697459 697505 -143088950 - MER54B LTR ERVL -2 791 746 2062 136 43 111 chr12 697505 697721 -143088734 + MER4B-int LTR ERV1 2718 2947 -3384 2046 152 7 0 chr12 697721 698017 -143088438 - AluSx SINE Alu -14 298 1 2062 136 43 111 chr12 698017 698052 -143088403 + MER4B-int LTR ERV1 2947 2983 -3348 2348 88 7 0 chr12 698052 698346 -143088109 - AluSp SINE Alu -16 297 2 2062 136 43 111 chr12 698346 698645 -143087810 + MER4B-int LTR ERV1 2983 3232 -3099 1129 154 0 38 chr12 698645 698898 -143087557 + AluSx SINE Alu 1 309 -3 252 125 21 0 chr12 698901 698949 -143087506 + MER4B-int LTR ERV1 3224 3272 -3059 503 177 0 10 chr12 698982 699078 -143087377 + MER4B-int LTR ERV1 3246 3340 -2991 427 198 66 19 chr12 699135 699241 -143087214 + MER4B-int LTR ERV1 3354 3464 -2867 1364 206 94 4 chr12 699400 699667 -143086788 + AluJb SINE Alu 1 291 -11 2571 63 3 0 chr12 699689 699991 -143086464 - AluY SINE Alu -8 303 1 3236 123 54 40 chr12 700051 700293 -143086162 - MER4A LTR ERV1 0 600 363 1969 108 9 97 chr12 700293 700635 -143085820 - AluSq SINE Alu 0 313 2 3236 123 54 40 chr12 700635 700984 -143085471 - MER4A LTR ERV1 -237 363 1 1777 104 104 15 chr12 701047 701366 -143085089 + AluSp SINE Alu 5 313 0 753 225 61 97 chr12 701425 701736 -143084719 - MER51C LTR ERV1 0 640 341 2046 112 3 7 chr12 702064 702359 -143084096 - AluSp SINE Alu -14 299 6 2182 133 32 61 chr12 702412 702552 -143083903 + LTR23 LTR ERV1 4 147 -290 2431 93 0 3 chr12 702552 702864 -143083591 - AluY SINE Alu 0 311 1 2182 133 32 61 chr12 702864 703165 -143083290 + LTR23 LTR ERV1 147 432 -5 3706 107 59 37 chr12 703234 703794 -143082661 + MER4B LTR ERV1 2 577 -33 2409 77 20 0 chr12 703794 704093 -143082362 - AluSg SINE Alu -5 305 1 3706 107 59 37 chr12 704093 704128 -143082327 + MER4B LTR ERV1 577 610 0 2610 59 3 0 chr12 705092 705399 -143081056 + AluY SINE Alu 1 308 -3 1118 95 0 0 chr12 705960 706097 -143080358 + FRAM SINE Alu 1 137 -39 200 35 35 0 chr12 706099 706128 -143080327 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 405 207 0 0 chr12 706217 706304 -143080151 + MER113 DNA MER1_type? 1 87 -434 22 0 0 0 chr12 706407 706429 -143080026 + AT_rich Low_complexity Low_complexity 1 22 0 226 276 165 24 chr12 706482 706609 -143079846 + MIR SINE MIR 53 197 -65 251 71 24 0 chr12 706610 706652 -143079803 + (TG)n Simple_repeat Simple_repeat 2 44 0 779 148 9 9 chr12 706652 706767 -143079688 - FLAM_C SINE Alu -18 115 1 203 318 16 0 chr12 706781 706844 -143079611 + L2 LINE L2 3193 3256 -16 197 282 111 50 chr12 707182 707327 -143079128 - MIR3 SINE MIR -62 146 7 395 233 41 48 chr12 707373 707519 -143078936 + MER103 DNA DNA 4 148 -18 2270 101 3 3 chr12 707854 708160 -143078295 - AluSp SINE Alu -7 306 1 2490 96 0 0 chr12 708891 709203 -143077252 - AluSx SINE Alu 0 312 1 693 313 26 49 chr12 709374 709639 -143076816 - MLT1I LTR MaLR 0 409 151 253 271 73 0 chr12 710133 710229 -143076226 + L1ME4a LINE L1 6015 6117 -4 2443 91 3 0 chr12 711122 711429 -143075026 - AluSg SINE Alu -2 308 1 2191 125 0 19 chr12 711439 711758 -143074697 - AluSp SINE Alu 0 313 1 460 122 61 12 chr12 711758 711830 -143074625 - AluJ/FRAM SINE Alu -10 302 224 976 136 0 32 chr12 711838 711993 -143074462 - AluJo SINE Alu -162 150 1 217 286 39 0 chr12 712559 712636 -143073819 - MIR SINE MIR -96 166 87 252 0 0 0 chr12 712752 712780 -143073675 + (TG)n Simple_repeat Simple_repeat 2 29 0 307 207 78 69 chr12 713163 713279 -143073176 + L1ME4a LINE L1 5836 5952 -169 1305 80 0 0 chr12 713294 713456 -143072999 + AluY SINE Alu 136 297 -14 563 241 86 26 chr12 713484 713716 -143072739 + MIR SINE MIR 17 262 0 675 181 132 0 chr12 713733 713877 -143072578 + MER45A DNA AcHobo 2 164 -14 2225 119 7 0 chr12 713942 714252 -143072203 - AluSx SINE Alu 0 312 1 395 222 57 45 chr12 714258 714331 -143072124 + L1ME4a LINE L1 5944 6015 -106 1414 153 122 49 chr12 714331 714618 -143071837 - AluJb SINE Alu -4 308 1 395 222 57 45 chr12 714618 714720 -143071735 + L1ME4a LINE L1 6015 6121 0 223 188 14 72 chr12 714753 714822 -143071633 - MIR SINE MIR -63 145 81 2485 78 0 0 chr12 715674 715970 -143070485 - AluSq SINE Alu -17 296 1 336 245 125 87 chr12 716135 716295 -143070160 - MIR SINE MIR -12 250 98 1444 137 34 0 chr12 716295 716529 -143069926 + L1MC1 LINE L1 6089 6330 -3 279 0 0 0 chr12 716530 716561 -143069894 + (CA)n Simple_repeat Simple_repeat 1 31 0 336 245 125 87 chr12 716561 716606 -143069849 - MIR SINE MIR -163 99 35 192 77 0 0 chr12 716669 716695 -143069760 + (TG)n Simple_repeat Simple_repeat 1 26 0 320 266 222 11 chr12 716724 716903 -143069552 + MIR SINE MIR 6 216 -46 1713 181 90 73 chr12 717377 717600 -143068855 - L1MC5 LINE L1 -46 7915 7697 2406 80 3 0 chr12 717600 717900 -143068555 + AluY SINE Alu 1 301 -10 1713 181 90 73 chr12 717900 718079 -143068376 - L1MC5 LINE L1 -264 7697 7523 1468 167 33 60 chr12 718079 718242 -143068213 - AluJo SINE Alu -19 293 140 2133 130 3 0 chr12 718242 718534 -143067921 - AluSq SINE Alu -20 293 1 1468 167 33 60 chr12 718534 718669 -143067786 - AluJo SINE Alu -172 140 3 1713 181 90 73 chr12 718669 718899 -143067556 - L1MC5 LINE L1 -438 7523 7271 834 106 0 0 chr12 719008 719131 -143067324 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 1999 98 3 57 chr12 719137 719434 -143067021 - AluSq SINE Alu -32 281 1 2275 85 3 7 chr12 719848 720143 -143066312 - AluSg SINE Alu -16 294 1 2264 111 0 13 chr12 720473 720780 -143065675 + AluSx SINE Alu 1 303 -9 928 169 12 24 chr12 720797 720963 -143065492 + FRAM SINE Alu 1 164 -2 429 222 26 17 chr12 720975 721092 -143065363 - MER3 DNA MER1_type -46 163 46 2008 115 41 7 chr12 721548 721843 -143064612 - AluSx SINE Alu -7 305 1 386 285 82 13 chr12 721854 722012 -143064443 - MIR3 SINE MIR -6 202 34 1022 197 13 70 chr12 722531 722759 -143063696 + MER58A DNA MER1_type 1 215 -9 1854 132 0 53 chr12 722760 723079 -143063376 + AluJb SINE Alu 1 302 -10 1709 156 7 42 chr12 723510 723818 -143062637 - AluJo SINE Alu -15 297 1 765 177 0 0 chr12 723824 723948 -143062507 - FLAM_C SINE Alu -9 124 1 1125 74 0 0 chr12 724133 724268 -143062187 + AluSg/x SINE Alu 160 294 -18 225 65 0 0 chr12 727084 727115 -143059340 + (TC)n Simple_repeat Simple_repeat 2 32 0 939 286 39 16 chr12 727307 727671 -143058784 + L2 LINE L2 2942 3313 0 1772 163 4 11 chr12 728137 728413 -143058042 + AluJo SINE Alu 1 274 -38 2006 144 6 10 chr12 728565 728877 -143057578 + AluSx SINE Alu 1 311 -1 756 208 0 0 chr12 728889 729019 -143057436 + FLAM_A SINE Alu 2 131 -2 718 138 7 7 chr12 729074 729212 -143057243 + GA-rich Low_complexity Low_complexity 3 140 0 2202 123 0 7 chr12 729656 729964 -143056491 - AluSx SINE Alu -6 306 1 235 54 89 71 chr12 730564 730620 -143055835 - L1MB2 LINE L1 -2 6169 6113 2006 73 98 4 chr12 730620 730894 -143055561 + AluSx SINE Alu 12 311 -1 1862 151 3 13 chr12 731563 731874 -143054581 - AluJo SINE Alu -4 308 1 36 0 0 0 chr12 732411 732447 -143054008 + AT_rich Low_complexity Low_complexity 1 36 0 2814 177 46 41 chr12 732591 732656 -143053799 + MER82 DNA MER2_type 62 125 -528 2574 55 3 0 chr12 732656 732963 -143053492 - AluY SINE Alu -3 308 1 2814 177 46 41 chr12 732963 733486 -143052969 + MER82 DNA MER2_type 125 653 0 449 244 84 0 chr12 733756 733887 -143052568 + MER5A DNA MER1_type 48 189 0 219 225 79 45 chr12 733989 734078 -143052377 + MIR SINE MIR 56 147 -115 202 139 28 0 chr12 734292 734328 -143052127 + CT-rich Low_complexity Low_complexity 2 38 0 2370 106 0 0 chr12 734502 734804 -143051651 - AluSx SINE Alu -10 302 1 881 200 0 0 chr12 734846 734996 -143051459 - FRAM SINE Alu -30 146 1 207 0 0 0 chr12 734996 735019 -143051436 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1883 128 23 0 chr12 735019 735284 -143051171 - AluJo SINE Alu -30 282 12 4975 38 8 0 chr12 735695 736281 -143050174 - LTR10C LTR ERV1 0 591 1 1056 98 22 120 chr12 736762 736987 -143049468 + LTR23 LTR ERV1 94 296 -141 917 144 0 7 chr12 737073 737212 -143049243 + AluJb SINE Alu 4 141 -171 728 135 127 0 chr12 737443 737569 -143048886 + AluSc SINE Alu 168 309 0 1788 158 0 17 chr12 737602 737900 -143048555 - AluJb SINE Alu -8 304 12 207 96 58 0 chr12 738823 738875 -143047580 + (TA)n Simple_repeat Simple_repeat 2 56 0 3212 121 81 19 chr12 738896 739153 -143047302 - L1MC1 LINE L1 -6 6327 6087 890 18 0 9 chr12 739153 739262 -143047193 + (CATAG)n Simple_repeat Simple_repeat 2 109 0 3212 121 81 19 chr12 739262 739598 -143046857 - L1MC1 LINE L1 -246 6087 5697 2256 72 0 49 chr12 739603 739909 -143046546 + AluY SINE Alu 1 291 -20 1310 93 0 0 chr12 739909 740071 -143046384 + AluSg/x SINE Alu 132 293 -17 235 357 0 0 chr12 740083 740195 -143046260 + L1ME LINE L1 5746 5857 -313 2229 100 3 13 chr12 740416 740726 -143045729 + AluSg SINE Alu 1 307 -3 8147 157 51 12 chr12 741156 742764 -143043691 + L1MC/D LINE L1 89 1853 -4573 515 167 0 0 chr12 742764 742848 -143043607 + AluS SINE Alu 1 84 -229 566 152 29 0 chr12 742849 742954 -143043501 + L1MC/D LINE L1 1841 1948 -4478 2478 90 3 0 chr12 742981 743293 -143043162 + AluSq SINE Alu 1 313 0 628 214 79 5 chr12 743411 743594 -143042861 + L1MC/D LINE L1 2354 2589 -3947 1586 186 14 24 chr12 743595 743891 -143042564 + AluJo SINE Alu 1 293 -19 2368 87 13 0 chr12 743921 744221 -143042234 + AluSp SINE Alu 1 304 -9 4889 202 41 58 chr12 744221 744291 -143042164 + L1MC/D LINE L1 4062 4132 -2481 2204 120 10 0 chr12 744291 744599 -143041856 + AluSp SINE Alu 2 312 -1 4889 202 41 58 chr12 744599 745308 -143041147 + L1MC/D LINE L1 4132 4852 -1761 2287 110 0 3 chr12 745308 745609 -143040846 + AluSx SINE Alu 1 300 -12 4889 202 41 58 chr12 745609 745762 -143040693 + L1MC/D LINE L1 4852 5006 -1607 2205 93 0 4 chr12 745762 746064 -143040391 + AluSc SINE Alu 2 302 0 4889 202 41 58 chr12 746064 746147 -143040308 + L1MC/D LINE L1 5006 5089 -1524 2342 95 0 0 chr12 746147 746442 -143040013 + AluSg SINE Alu 1 295 -15 4889 202 41 58 chr12 746442 746987 -143039468 + L1MC/D LINE L1 5089 5587 -1026 2324 90 0 3 chr12 746987 747286 -143039169 + AluSg SINE Alu 1 298 -12 4889 202 41 58 chr12 747286 747665 -143038790 + L1MC/D LINE L1 5587 5971 -642 2294 100 0 3 chr12 747668 747968 -143038487 - AluSx SINE Alu -2 310 12 358 162 86 68 chr12 747968 748085 -143038370 - LTR36 LTR ERV1 -491 120 2 375 303 41 52 chr12 748093 748360 -143038095 + L2 LINE L2 1852 2115 -1199 1828 124 96 37 chr12 748406 748760 -143037695 - THE1C LTR MaLR 0 375 1 2119 112 0 30 chr12 748777 749080 -143037375 - AluSx SINE Alu -18 294 1 736 210 27 58 chr12 749170 749427 -143037028 - L2 LINE L2 -378 2936 2688 2305 113 3 0 chr12 749505 749815 -143036640 + AluSp SINE Alu 1 311 -2 1223 93 27 22 chr12 749815 750141 -143036314 + AluSg/x SINE Alu 129 458 0 1117 100 6 6 chr12 750147 750327 -143036128 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 25 51 0 0 chr12 750895 750934 -143035521 + AT_rich Low_complexity Low_complexity 1 39 0 393 275 92 56 chr12 751142 751514 -143034941 + L1ME LINE L1 4686 5080 -1066 2302 143 37 8 chr12 751514 751891 -143034564 + MLT1B LTR MaLR 1 388 -2 393 275 92 56 chr12 751891 751983 -143034472 + L1ME LINE L1 5080 5167 -979 356 248 168 8 chr12 752133 752258 -143034197 - Charlie8 DNA MER1_type -2272 145 1 340 189 81 18 chr12 752903 753014 -143033441 + L1ME4a LINE L1 6004 6121 0 655 277 33 28 chr12 753724 753937 -143032518 - MIR SINE MIR -44 218 5 352 185 62 0 chr12 754353 754434 -143032021 + MIR SINE MIR 156 241 -21 557 273 95 63 chr12 755082 755430 -143031025 - LTR16A LTR ERVL 0 450 92 477 232 116 0 chr12 755539 755651 -143030804 - AluJo/FRAM SINE Alu -17 295 171 517 135 0 0 chr12 755651 755725 -143030730 + AluJb SINE Alu 192 265 -47 862 215 11 0 chr12 756447 756633 -143029822 - MER53 DNA DNA -1 188 1 985 141 37 0 chr12 756643 756806 -143029649 - MER3 DNA MER1_type -86 123 2 390 145 0 0 chr12 757570 757632 -143028823 + FLAM SINE Alu 71 132 -1 848 250 43 71 chr12 757700 757915 -143028540 + L1ME LINE L1 5360 5559 -562 2372 45 41 10 chr12 757915 758206 -143028249 - AluY SINE Alu -11 300 1 848 250 43 71 chr12 758206 758337 -143028118 + L1ME LINE L1 5559 5692 -429 2251 140 88 10 chr12 758357 758742 -143027713 - MSTA LTR MaLR -1 427 13 327 130 0 0 chr12 758742 758788 -143027667 - MSTA LTR MaLR -382 46 1 3620 228 50 50 chr12 759169 759249 -143027206 + L1MEc LINE L1 35 113 -6092 1612 67 5 14 chr12 759249 759459 -143026996 - AluY SINE Alu -21 290 83 3620 228 50 50 chr12 759459 760309 -143026146 + L1MEc LINE L1 113 961 -5244 2503 80 3 0 chr12 760309 760611 -143025844 + AluSp SINE Alu 1 303 -10 3620 228 50 50 chr12 760611 760694 -143025761 + L1MEc LINE L1 961 1008 -5197 1280 54 0 0 chr12 760694 760842 -143025613 + L1PA5 LINE L1 5998 6145 -9 3620 228 50 50 chr12 760842 760866 -143025589 + L1MEc LINE L1 1008 1030 -5175 270 229 0 0 chr12 760875 760936 -143025519 + L1MEc LINE L1 1034 1094 -5302 2220 149 65 88 chr12 760938 761213 -143025242 - L1MB8 LINE L1 -307 5871 5591 1526 173 39 14 chr12 761213 761496 -143024959 - AluJb SINE Alu -18 294 5 2220 149 65 88 chr12 761496 761629 -143024826 - L1MB8 LINE L1 -587 5591 5475 2126 99 60 0 chr12 761629 761913 -143024542 - AluSx SINE Alu -11 301 1 2220 149 65 88 chr12 761913 762027 -143024428 - L1MB8 LINE L1 -703 5475 5360 249 33 0 0 chr12 762048 762078 -143024377 + (TG)n Simple_repeat Simple_repeat 2 31 0 793 118 109 0 chr12 762083 762193 -143024262 - FRAM SINE Alu -22 154 33 2448 191 41 45 chr12 762194 762422 -143024033 - L1MB8 LINE L1 -1064 5082 4855 2377 75 0 3 chr12 762422 762716 -143023739 - AluY SINE Alu -18 293 1 2448 191 41 45 chr12 762716 763115 -143023340 - L1MB8 LINE L1 -1291 4855 4457 308 111 32 63 chr12 763119 763182 -143023273 - HY1 scRNA scRNA -1 111 51 370 183 0 0 chr12 763222 763304 -143023151 - L1MB8 LINE L1 -1688 4458 4377 1846 129 41 0 chr12 763309 763612 -143022843 + AluSx SINE Alu 1 314 0 297 217 29 152 chr12 763637 763775 -143022680 + MIR3 SINE MIR 88 208 0 1448 280 54 20 chr12 763934 764394 -143022061 - L3 LINE CR1 -5 1572 1097 1520 173 67 35 chr12 764404 764687 -143021768 + AluJb SINE Alu 1 292 -20 970 130 0 15 chr12 764707 764838 -143021617 + AluJo SINE Alu 1 129 -173 198 0 0 0 chr12 764889 764911 -143021544 + (T)n Simple_repeat Simple_repeat 1 22 0 474 303 47 14 chr12 765044 765317 -143021138 - L3 LINE CR1 -870 707 369 763 257 72 0 chr12 765411 765633 -143020822 - MIR SINE MIR 0 262 25 951 148 0 0 chr12 766153 766295 -143020160 + AluJo SINE Alu 137 278 -34 222 37 0 0 chr12 766308 766335 -143020120 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 29 47 0 0 chr12 767309 767352 -143019103 + AT_rich Low_complexity Low_complexity 1 43 0 1754 150 20 23 chr12 767354 767660 -143018795 - AluSx SINE Alu -7 305 1 2355 90 0 3 chr12 767729 768030 -143018425 + AluSp SINE Alu 1 300 -13 372 103 0 0 chr12 768084 768142 -143018313 + (TG)n Simple_repeat Simple_repeat 1 58 0 2383 54 3 10 chr12 768170 768464 -143017991 - AluY SINE Alu -19 292 1 2174 107 0 0 chr12 769720 770029 -143016426 - AluSx SINE Alu 0 309 1 2277 99 0 10 chr12 770323 770627 -143015828 + AluSx SINE Alu 1 301 -11 3503 218 63 24 chr12 771069 771125 -143015330 - L1ME1 LINE L1 -5 6230 6178 1579 141 118 8 chr12 771125 771388 -143015067 + AluJo SINE Alu 1 292 -20 3503 218 63 24 chr12 771388 772295 -143014160 - L1ME1 LINE L1 -57 6178 5227 877 148 0 40 chr12 772295 772444 -143014011 + FLAM_C SINE Alu 1 143 0 391 160 53 0 chr12 772451 772526 -143013929 - L1ME1 LINE L1 -985 5230 5152 722 194 40 0 chr12 772528 772652 -143013803 - FLAM_C SINE Alu -12 131 3 2385 90 3 0 chr12 772672 772971 -143013484 + AluSc SINE Alu 1 300 -9 390 171 53 0 chr12 772972 773048 -143013407 - L1ME1 LINE L1 -1059 5156 5077 * 1379 242 70 29 chr12 773042 773433 -143013022 - L1ME1 LINE L1 -3698 2517 2141 2368 71 0 19 chr12 773433 773741 -143012714 - AluY SINE Alu -9 302 1 1379 242 70 29 chr12 773741 773991 -143012464 - L1ME1 LINE L1 -4074 2141 1903 23 33 0 0 chr12 773991 774021 -143012434 + AT_rich Low_complexity Low_complexity 1 30 0 912 147 0 0 chr12 774021 774150 -143012305 - FLAM_C SINE Alu -3 130 2 316 259 84 35 chr12 774284 774427 -143012028 - L1ME1 LINE L1 -4577 1819 1670 184 97 0 32 chr12 774483 774514 -143011941 - MER5B DNA MER1_type -123 55 26 230 336 15 15 chr12 774710 774847 -143011608 + HAL1b LINE L1 1211 1347 -1 1535 99 9 0 chr12 774895 775106 -143011349 + AluSg/x SINE Alu 90 302 -10 465 284 117 94 chr12 775213 775424 -143011031 - L1MC4a LINE L1 -1884 5924 5719 1212 146 0 0 chr12 775424 775588 -143010867 - FRAM SINE Alu -2 164 1 465 284 117 94 chr12 775588 775611 -143010844 - L1MC4a LINE L1 -2089 5719 5698 2215 97 3 3 chr12 775611 775901 -143010554 - AluSg SINE Alu -6 304 15 465 284 117 94 chr12 775901 776120 -143010335 - L1MC4a LINE L1 -2110 5698 5460 189 0 0 0 chr12 776156 776177 -143010278 + (T)n Simple_repeat Simple_repeat 1 21 0 1633 173 66 4 chr12 776187 776459 -143009996 + AluJo SINE Alu 1 289 -23 308 289 161 51 chr12 776524 776569 -143009886 - L1MC4a LINE L1 -748 5398 5359 2173 112 3 0 chr12 776569 776865 -143009590 - AluSx SINE Alu -5 307 11 308 289 161 51 chr12 776865 777428 -143009027 - L1MC4a LINE L1 -787 5359 4723 333 186 0 29 chr12 778162 778256 -143008199 + AluJ/FRAM SINE Alu 224 302 0 230 238 0 0 chr12 780143 780185 -143006270 + polypyrimidine Low_complexity Low_complexity 1 42 0 344 291 173 53 chr12 781628 782027 -143004428 + L1M2 LINE L1 536 982 -5867 22 0 0 0 chr12 782752 782774 -143003681 + AT_rich Low_complexity Low_complexity 1 22 0 2249 100 3 0 chr12 783638 783947 -143002508 + AluSg SINE Alu 1 310 0 185 234 0 21 chr12 784870 784917 -143001538 - MIR SINE MIR -121 141 96 1315 80 0 58 chr12 785250 785438 -143001017 - AluSc SINE Alu -3 306 130 2498 72 3 0 chr12 785699 786006 -143000449 + AluSg SINE Alu 1 308 -2 2158 21 0 0 chr12 786314 786551 -142999904 - AluYb8 SINE Alu -2 316 80 33 25 0 0 chr12 786953 786993 -142999462 + AT_rich Low_complexity Low_complexity 1 40 0 28 29 0 0 chr12 787216 787251 -142999204 + AT_rich Low_complexity Low_complexity 1 35 0 2422 77 0 0 chr12 787272 787572 -142998883 - AluSg SINE Alu -10 300 1 728 228 162 5 chr12 787661 787858 -142998597 + MIR SINE MIR 5 232 -30 2026 111 6 59 chr12 788704 789028 -142997427 - AluSx SINE Alu -5 307 1 1255 183 71 80 chr12 789851 789989 -142996466 + MER2 DNA MER2_type 1 139 -206 2150 108 0 14 chr12 789989 790286 -142996169 - AluSx SINE Alu -2 310 18 1255 183 71 80 chr12 790286 790485 -142995970 + MER2 DNA MER2_type 139 335 -10 2284 103 6 0 chr12 790678 790989 -142995466 - AluSp SINE Alu 0 313 1 369 217 0 0 chr12 791025 791094 -142995361 - Tigger7 DNA MER2_type -31 2456 2388 800 118 118 123 chr12 791111 791245 -142995210 - Tigger7 DNA MER2_type -489 244 110 2265 105 0 16 chr12 791245 791549 -142994906 + AluSq SINE Alu 1 299 -14 800 118 118 123 chr12 791549 791601 -142994854 - Tigger7 DNA MER2_type -623 110 59 341 286 34 84 chr12 791870 792108 -142994347 - L2 LINE L2 -941 2373 2148 2433 79 7 0 chr12 792303 792608 -142993847 + AluSp SINE Alu 7 313 0 742 150 64 132 chr12 792770 792808 -142993647 - MER3 DNA MER1_type -3 206 167 1882 117 34 0 chr12 792808 793073 -142993382 - AluSq SINE Alu -39 274 1 742 150 64 132 chr12 793073 793209 -142993246 - MER3 DNA MER1_type -42 167 47 1656 181 7 10 chr12 793209 793497 -142992958 + AluJo SINE Alu 1 287 -25 742 150 64 132 chr12 793497 793541 -142992914 - MER3 DNA MER1_type -162 47 2 715 194 0 43 chr12 793592 793731 -142992724 + FLAM_C SINE Alu 1 133 0 204 208 198 52 chr12 793947 794043 -142992412 - L2 LINE L2 -1414 1900 1791 734 143 7 97 chr12 794044 794198 -142992257 + L1PB4 LINE L1 6011 6150 -6 23 0 0 0 chr12 794206 794229 -142992226 + AT_rich Low_complexity Low_complexity 1 23 0 2293 92 7 0 chr12 794428 794720 -142991735 - AluSg SINE Alu -16 294 1 2229 114 0 0 chr12 794722 795020 -142991435 - AluSx SINE Alu -14 298 1 2403 97 0 0 chr12 795184 795494 -142990961 - AluSg SINE Alu 0 310 1 2040 129 0 16 chr12 796070 796379 -142990076 - AluSx SINE Alu -8 304 1 2328 88 7 3 chr12 796754 797051 -142989404 - AluSg SINE Alu -12 298 1 944 185 82 26 chr12 797113 797147 -142989308 - L1MC4a LINE L1 -903 6905 6874 2030 121 10 13 chr12 797147 797445 -142989010 - AluSx SINE Alu -15 297 1 944 185 82 26 chr12 797445 797642 -142988813 - L1MC4a LINE L1 -934 6874 6661 685 187 261 84 chr12 797664 797916 -142988539 - MLT1A1 LTR MaLR 0 365 47 2474 70 3 3 chr12 797916 798217 -142988238 - AluSp SINE Alu -12 301 1 685 187 261 84 chr12 798217 798274 -142988181 - MLT1A1 LTR MaLR -318 47 1 558 146 222 27 chr12 798309 798494 -142987961 + Charlie5 DNA MER1_type 2364 2584 -28 2189 91 0 10 chr12 798941 799239 -142987216 - AluY SINE Alu -15 296 2 1632 115 0 0 chr12 799461 799678 -142986777 - AluSx SINE Alu -95 217 1 649 195 51 0 chr12 799765 799883 -142986572 - AluJb SINE Alu -178 134 11 254 228 89 50 chr12 800069 800170 -142986285 - L1ME4a LINE L1 -19 6102 5998 417 156 0 0 chr12 800348 800425 -142986030 + (TG)n Simple_repeat Simple_repeat 1 77 0 2453 65 7 0 chr12 800921 801214 -142985241 + AluSp SINE Alu 1 295 -18 231 303 202 0 chr12 801580 801679 -142984776 - L2 LINE L2 -4 3309 3191 234 224 224 36 chr12 801679 801871 -142984584 - L1ME4a LINE L1 -202 5919 5692 313 226 24 89 chr12 802514 802638 -142983817 - L1ME4a LINE L1 -458 5663 5548 603 162 0 23 chr12 803392 803627 -142982828 + AluJo SINE Alu 24 290 -22 216 237 130 95 chr12 803699 803868 -142982587 - MIR SINE MIR -30 232 58 1709 166 4 4 chr12 803996 804273 -142982182 - AluJo SINE Alu -31 281 5 393 39 0 0 chr12 804338 804389 -142982066 + (TG)n Simple_repeat Simple_repeat 2 52 0 2184 92 3 3 chr12 804389 804673 -142981782 - AluSc SINE Alu -25 284 1 2304 95 10 0 chr12 805095 805401 -142981054 - AluSc SINE Alu 0 309 1 31 0 0 0 chr12 806234 806265 -142980190 + AT_rich Low_complexity Low_complexity 1 31 0 2275 108 7 0 chr12 806269 806574 -142979881 - AluSx SINE Alu -5 307 1 21 0 0 0 chr12 806581 806602 -142979853 + AT_rich Low_complexity Low_complexity 1 21 0 2280 109 10 0 chr12 807305 807645 -142978810 - AluSx SINE Alu 0 343 1 445 200 178 0 chr12 808904 809039 -142977416 + MER112 DNA MER1_type 1 159 -101 210 37 0 0 chr12 809044 809071 -142977384 + (CAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr12 809516 809538 -142976917 + AT_rich Low_complexity Low_complexity 1 22 0 223 342 63 9 chr12 810273 810384 -142976071 - MIR SINE MIR -70 192 76 1848 114 8 0 chr12 810501 810747 -142975708 - AluSx SINE Alu -64 248 1 1026 138 71 55 chr12 810750 810842 -142975613 - MER33 DNA MER1_type -2304 281 192 1949 124 3 54 chr12 810842 811157 -142975298 - AluJo SINE Alu -13 299 1 1026 138 71 55 chr12 811157 811311 -142975144 - MER33 DNA MER1_type -2393 192 31 1249 152 4 52 chr12 811311 811542 -142974913 + AluJo SINE Alu 1 220 -92 1185 199 0 14 chr12 811596 811817 -142974638 + AluJo SINE Alu 3 220 -92 243 0 0 0 chr12 811852 811879 -142974576 + (A)n Simple_repeat Simple_repeat 1 27 0 1460 210 0 10 chr12 811883 812174 -142974281 + AluJo SINE Alu 3 290 -22 22 0 0 0 chr12 812177 812199 -142974256 + AT_rich Low_complexity Low_complexity 1 22 0 403 204 97 9 chr12 812455 812568 -142973887 - L1MA10 LINE L1 0 6334 6212 * 1740 260 96 28 chr12 812566 813346 -142973109 - HAL1 LINE L1 -499 2008 1176 2017 90 11 4 chr12 813366 813632 -142972823 - AluY SINE Alu -35 276 9 25 0 0 0 chr12 813697 813722 -142972733 + AT_rich Low_complexity Low_complexity 1 25 0 320 284 153 26 chr12 813747 813937 -142972518 - HAL1 LINE L1 -1631 876 663 479 324 135 30 chr12 813960 814413 -142972042 - L1M4 LINE L1 -3360 2786 2251 2133 128 3 0 chr12 814413 814710 -142971745 - AluSq SINE Alu -15 298 1 479 324 135 30 chr12 814710 814864 -142971591 - L1M4 LINE L1 -3895 2251 2115 21 0 0 0 chr12 815093 815114 -142971341 + AT_rich Low_complexity Low_complexity 1 21 0 191 337 20 61 chr12 815131 815229 -142971226 + MIR SINE MIR 4 97 -165 661 104 85 0 chr12 815250 815356 -142971099 - AluJb SINE Alu -193 119 5 440 177 125 0 chr12 815362 815458 -142970997 + MIR SINE MIR 155 262 0 186 43 0 0 chr12 815775 815798 -142970657 + (TG)n Simple_repeat Simple_repeat 2 24 0 1544 168 59 66 chr12 815820 816212 -142970243 - MLT2C1 LTR ERVL -8 389 1 2144 104 0 0 chr12 816552 816830 -142969625 + AluSg SINE Alu 3 280 -30 978 130 86 12 chr12 817478 817640 -142968815 - AluJo SINE Alu -10 302 129 523 255 78 52 chr12 817855 818086 -142968369 - MLT1L LTR MaLR -377 238 2 803 165 0 0 chr12 818215 818342 -142968113 - AluJo SINE Alu -180 132 6 198 224 0 0 chr12 818721 818770 -142967685 + CT-rich Low_complexity Low_complexity 3 51 0 321 26 0 0 chr12 819169 819207 -142967248 + (CA)n Simple_repeat Simple_repeat 1 38 0 2230 101 0 10 chr12 820249 820557 -142965898 - AluSg SINE Alu -5 305 1 23 33 0 0 chr12 820762 820792 -142965663 + AT_rich Low_complexity Low_complexity 1 30 0 247 253 154 11 chr12 820878 820969 -142965486 + MIR SINE MIR 111 214 -48 3018 171 60 23 chr12 821705 822353 -142964102 - L1MB8 LINE L1 -6 6172 5501 1637 196 73 100 chr12 822366 822715 -142963740 - L1MB8 LINE L1 -2106 4040 3683 1444 214 18 11 chr12 822715 822995 -142963460 - AluJo SINE Alu -30 282 1 1637 196 73 100 chr12 822995 823270 -142963185 - L1MB8 LINE L1 -2463 3683 3433 1545 154 91 51 chr12 823270 823620 -142962835 + THE1B LTR MaLR 1 364 0 1637 196 73 100 chr12 823620 823667 -142962788 - L1MB8 LINE L1 -2713 3433 3386 1607 161 58 14 chr12 823826 824117 -142962338 - AluSx SINE Alu -8 304 1 494 247 60 0 chr12 824138 824288 -142962167 - L1MEc LINE L1 -4320 2076 1918 542 84 0 0 chr12 824448 824519 -142961936 - AluS SINE Alu -242 71 1 2247 89 0 13 chr12 825606 825910 -142960545 + AluSx SINE Alu 1 300 -12 2450 62 0 3 chr12 826131 826435 -142960020 - AluY SINE Alu -8 303 1 23 0 0 0 chr12 826594 826617 -142959838 + AT_rich Low_complexity Low_complexity 1 23 0 1849 142 3 27 chr12 827079 827374 -142959081 - AluJb SINE Alu -24 288 1 1365 194 0 86 chr12 827506 827628 -142958827 + AluJo SINE Alu 5 136 -176 2044 112 7 0 chr12 827628 827905 -142958550 - AluSx SINE Alu -10 302 24 1365 194 0 86 chr12 827905 828096 -142958359 + AluJo SINE Alu 136 291 -21 848 163 113 17 chr12 828104 828343 -142958112 - MER69 DNA AcHobo -100 2426 2165 21 0 0 0 chr12 828367 828388 -142958067 + AT_rich Low_complexity Low_complexity 1 21 0 227 44 44 0 chr12 828402 828447 -142958008 - L1MB4 LINE L1 0 6180 6134 369 0 0 0 chr12 829367 829408 -142957047 + (TG)n Simple_repeat Simple_repeat 2 42 0 1446 169 8 0 chr12 829408 829650 -142956805 - AluJo SINE Alu -67 245 2 1074 91 0 9 chr12 831444 831707 -142954748 + AluSx SINE Alu 1 307 -3 1605 147 13 102 chr12 832211 832373 -142954082 - L1MB3 LINE L1 -11 6172 6062 1892 95 0 0 chr12 832373 832616 -142953839 - AluSq SINE Alu -70 243 1 1605 147 13 102 chr12 832616 832835 -142953620 - L1MB3 LINE L1 -121 6062 5825 212 76 76 45 chr12 832848 832914 -142953541 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 1617 183 25 53 chr12 832914 833307 -142953148 - L1MB3 LINE L1 -364 5816 5435 22 0 0 0 chr12 833801 833823 -142952632 + AT_rich Low_complexity Low_complexity 1 22 0 762 139 9 0 chr12 835121 835236 -142951219 + FLAM_C SINE Alu 2 117 -16 2683 32 0 0 chr12 835652 835962 -142950493 - AluY SINE Alu -1 310 1 564 181 147 0 chr12 836234 836350 -142950105 - FLAM_C SINE Alu 0 133 1 2388 89 0 0 chr12 836705 837007 -142949448 - AluSq SINE Alu -11 302 1 32 0 0 0 chr12 837169 837201 -142949254 + AT_rich Low_complexity Low_complexity 1 32 0 2237 97 10 0 chr12 837913 838202 -142948253 + AluSg SINE Alu 1 292 -18 206 258 106 30 chr12 840291 840357 -142946098 - L2 LINE L2 -4 3309 3239 368 229 41 118 chr12 840611 840856 -142945599 + L1MEd LINE L1 983 1208 -4911 1664 159 31 7 chr12 840911 841201 -142945254 + AluJo SINE Alu 9 305 -7 2151 82 26 49 chr12 841975 842280 -142944175 + AluSx SINE Alu 1 298 -14 3410 121 17 19 chr12 842616 843144 -142943311 - MER1A DNA MER1_type 0 527 1 321 306 136 35 chr12 843825 844083 -142942372 + L1MEd LINE L1 82 365 -5754 1477 176 3 60 chr12 844212 844531 -142941924 - AluJo SINE Alu -11 301 1 331 243 134 102 chr12 844713 845154 -142941301 + L1MEd LINE L1 682 1136 -4983 1078 105 0 0 chr12 845154 845297 -142941158 + AluSg/x SINE Alu 155 297 -12 2228 92 3 44 chr12 845600 845917 -142940538 + AluSx SINE Alu 1 304 -8 869 184 32 0 chr12 845951 846136 -142940319 - L1MB5 LINE L1 0 6174 5984 423 258 53 33 chr12 846250 846401 -142940054 + MIR3 SINE MIR 14 167 -41 2247 192 80 12 chr12 846462 846566 -142939889 - L1MB5 LINE L1 -36 6138 6035 1450 224 171 9 chr12 846566 847271 -142939184 - L1MC4 LINE L1 -743 5639 5401 1047 145 98 28 chr12 847279 847493 -142938962 - MER46A DNA MER2_type -7 229 1 5505 218 62 28 chr12 847497 848410 -142938045 - L1MC4 LINE L1 -981 5401 4408 1722 181 7 16 chr12 848410 848719 -142937736 - AluJo SINE Alu -6 306 1 5505 218 62 28 chr12 848719 849407 -142937048 - L1MC4 LINE L1 -1974 4408 3745 4361 191 105 56 chr12 849421 850031 -142936424 - L1MC4 LINE L1 -3434 2948 2369 2385 88 0 3 chr12 850031 850336 -142936119 - AluSg SINE Alu -6 304 1 4361 191 105 56 chr12 850336 851580 -142934875 - L1MC4 LINE L1 -4013 2369 997 190 260 250 0 chr12 851586 851686 -142934769 - MIR SINE MIR -10 252 128 2021 134 0 13 chr12 851844 852151 -142934304 - AluSx SINE Alu -8 304 2 26 30 0 0 chr12 852714 852747 -142933708 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr12 852881 852912 -142933543 + AT_rich Low_complexity Low_complexity 1 31 0 544 182 54 68 chr12 853024 853172 -142933283 - L1ME2 LINE L1 -52 6112 5967 322 286 61 56 chr12 853302 853533 -142932922 - L1MCa LINE L1 -4196 1884 1653 271 153 129 0 chr12 853623 853708 -142932747 + L1M4 LINE L1 1257 1352 -5190 625 205 41 41 chr12 853897 854068 -142932387 - L1MCa LINE L1 -5580 490 320 982 181 52 5 chr12 854072 854265 -142932190 + MER3 DNA MER1_type 3 204 -5 488 240 143 41 chr12 854378 854574 -142931881 - L1MCa LINE L1 -5853 217 2 2190 108 0 0 chr12 855460 855772 -142930683 - AluSx SINE Alu 0 312 1 30 77 0 0 chr12 855860 855925 -142930530 + AT_rich Low_complexity Low_complexity 1 65 0 2201 112 0 26 chr12 855959 856272 -142930183 + AluSx SINE Alu 1 305 -7 1096 186 0 61 chr12 856381 856612 -142929843 - MER20 DNA MER1_type -1 218 2 476 262 160 44 chr12 858661 859024 -142927431 - L1MC5 LINE L1 -207 7754 7350 1658 149 51 70 chr12 859075 859199 -142927256 + Charlie1b DNA MER1_type 104 229 -2532 2248 111 0 0 chr12 859199 859496 -142926959 + AluSx SINE Alu 1 297 -15 1658 149 51 70 chr12 859496 859799 -142926656 + Charlie1b DNA MER1_type 229 523 0 2395 71 0 0 chr12 860012 860306 -142926149 - AluY SINE Alu -5 306 13 191 376 55 24 chr12 860998 861163 -142925292 + L2 LINE L2 2415 2584 -730 356 340 97 59 chr12 861777 862098 -142924357 - L2 LINE L2 -16 3256 2924 378 288 56 24 chr12 862509 862634 -142923821 + MIR SINE MIR 26 154 -108 1762 144 3 63 chr12 862980 863299 -142923156 + AluJb SINE Alu 1 300 -12 282 202 149 43 chr12 863476 863570 -142922885 - L2 LINE L2 -16 3297 3194 2114 122 7 3 chr12 863614 863909 -142922546 + AluSx SINE Alu 1 296 -16 2596 223 38 18 chr12 864887 864966 -142921489 - L1MB8 LINE L1 0 6178 6102 2623 110 34 63 chr12 864966 865235 -142921220 - MER57B LTR ERV1 0 434 182 2428 90 0 0 chr12 865235 865546 -142920909 + AluSx SINE Alu 1 311 -1 2623 110 34 63 chr12 865546 865723 -142920732 - MER57B LTR ERV1 -252 182 1 2596 223 38 18 chr12 865723 866022 -142920433 - L1MB8 LINE L1 -76 6102 5810 303 28 0 0 chr12 866022 866058 -142920397 + (TG)n Simple_repeat Simple_repeat 2 37 0 2596 223 38 18 chr12 866058 866345 -142920110 - L1MB8 LINE L1 -368 5810 5499 1791 164 4 7 chr12 866348 866654 -142919801 - AluJb SINE Alu 0 310 6 740 208 77 11 chr12 866655 866838 -142919617 - MLT1C LTR MaLR -272 195 1 320 301 63 28 chr12 866847 866990 -142919465 - L2 LINE L2 -5 3308 3161 322 346 45 11 chr12 867281 867460 -142918995 - L2 LINE L2 -601 2713 2529 26 64 0 0 chr12 867606 867653 -142918802 + AT_rich Low_complexity Low_complexity 1 47 0 1876 121 7 37 chr12 867672 867970 -142918485 - AluSx SINE Alu -23 289 1 1381 197 31 76 chr12 867990 868064 -142918391 + MER58B DNA MER1_type 3 79 -2341 1665 167 0 21 chr12 868064 868352 -142918103 - AluJo SINE Alu -7 305 24 1381 197 31 76 chr12 868352 868632 -142917823 + MER58B DNA MER1_type 79 341 0 2019 149 39 42 chr12 869037 869446 -142917009 - L1MB7 LINE L1 -21 6163 5756 1658 178 27 56 chr12 869547 869923 -142916532 - MLT1A1 LTR MaLR 0 365 1 185 174 87 0 chr12 870003 870049 -142916406 + L2 LINE L2 3264 3313 0 255 103 0 0 chr12 870226 870265 -142916190 + MADE1 DNA Mariner 42 80 0 189 0 0 0 chr12 870421 870442 -142916013 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 243 0 0 0 chr12 870867 870894 -142915561 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1959 138 0 3 chr12 870897 871180 -142915275 - AluSx SINE Alu -30 282 1 1778 143 77 29 chr12 871204 871583 -142914872 - Charlie1 DNA MER1_type -19 2742 2346 274 304 0 14 chr12 871585 871654 -142914801 - Charlie1 DNA MER1_type -2691 70 3 389 204 261 42 chr12 871675 871817 -142914638 + MER5A DNA MER1_type 11 183 -6 1931 134 6 19 chr12 872065 872379 -142914076 - AluSx SINE Alu -2 310 1 26 0 0 0 chr12 872756 872782 -142913673 + AT_rich Low_complexity Low_complexity 1 26 0 2827 13 0 0 chr12 872829 873138 -142913317 - AluYa5 SINE Alu -2 309 1 22 70 0 0 chr12 873163 873206 -142913249 + AT_rich Low_complexity Low_complexity 1 43 0 416 240 39 10 chr12 873476 873580 -142912875 + MIR SINE MIR 14 120 -142 292 281 157 7 chr12 873806 873959 -142912496 - MIR SINE MIR -6 256 81 204 412 0 15 chr12 875536 875604 -142910851 + MIR3 SINE MIR 15 81 -127 2181 104 13 13 chr12 875740 876048 -142910407 - AluSc SINE Alu -1 308 1 180 0 0 0 chr12 876440 876460 -142909995 + (T)n Simple_repeat Simple_repeat 1 20 0 7714 20 3 1 chr12 877514 878924 -142907531 - L1PA4 LINE L1 -4 6151 4741 1604 164 10 10 chr12 881702 881994 -142904461 - AluJo SINE Alu -20 292 1 1560 167 64 4 chr12 882029 882293 -142904162 + AluJo SINE Alu 1 280 -32 2175 92 34 0 chr12 882299 882591 -142903864 - AluSx SINE Alu -10 302 1 1157 189 160 39 chr12 882675 882982 -142903473 + MER2 DNA MER2_type 1 344 0 2425 78 0 3 chr12 883775 884082 -142902373 - AluSc SINE Alu -3 306 1 22 56 0 19 chr12 884084 884109 -142902346 + AT_rich Low_complexity Low_complexity 1 25 -28 2090 127 0 19 chr12 884109 884423 -142902032 + AluSx SINE Alu 1 308 -4 22 56 0 19 chr12 884423 884451 -142902004 + AT_rich Low_complexity Low_complexity 25 53 0 1966 159 3 0 chr12 886138 886433 -142900022 - AluSx SINE Alu -16 296 1 258 376 56 16 chr12 886591 886716 -142899739 + MIR SINE MIR 21 150 -58 1858 136 3 42 chr12 887651 887959 -142898496 - AluJo SINE Alu -16 296 1 181 85 0 64 chr12 887983 888030 -142898425 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 2096 123 7 19 chr12 892044 892354 -142894101 - AluSx SINE Alu -6 306 1 2146 89 7 3 chr12 894320 894602 -142891853 - AluSc SINE Alu -25 284 2 2230 97 10 0 chr12 894785 895083 -142891372 + AluSx SINE Alu 1 301 -11 26 0 0 0 chr12 895679 895705 -142890750 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr12 897434 897477 -142888978 + AT_rich Low_complexity Low_complexity 1 43 0 1093 204 5 15 chr12 898505 898711 -142887744 - MER20 DNA MER1_type -2 217 14 2142 121 0 0 chr12 899556 899846 -142886609 - AluSx SINE Alu -22 290 1 1771 99 48 79 chr12 900058 900380 -142886075 - AluSx SINE Alu 0 313 1 882 144 8 0 chr12 901978 902110 -142884345 + FRAM SINE Alu 26 158 -18 658 340 25 5 chr12 902617 902820 -142883635 - MIR SINE MIR -44 218 12 2370 68 0 3 chr12 904070 904364 -142882091 + AluY SINE Alu 1 293 -18 343 249 39 25 chr12 904596 904732 -142881723 + L1PA8A LINE L1 5671 5808 -323 314 267 28 20 chr12 904798 904947 -142881508 + L1ME4a LINE L1 1197 6049 0 2391 93 0 3 chr12 904996 905308 -142881147 - AluSp SINE Alu -2 311 1 329 153 17 0 chr12 906863 906922 -142879533 - HsTC2 DNA Tc2 -2 1896 1837 216 0 0 0 chr12 907457 907481 -142878974 + (T)n Simple_repeat Simple_repeat 1 24 0 182 309 0 0 chr12 910064 910106 -142876349 - L3b LINE CR1 -22 1561 1520 2016 116 0 7 chr12 910145 910422 -142876033 - AluSx SINE Alu -17 295 21 1100 127 0 0 chr12 911821 911978 -142874477 + AluSg/x SINE Alu 131 287 -23 2293 84 0 3 chr12 917480 917767 -142868688 + AluY SINE Alu 1 286 -25 2286 110 0 3 chr12 917895 918196 -142868259 - AluSx SINE Alu -12 300 1 2235 102 7 0 chr12 919087 919381 -142867074 - AluSp SINE Alu -17 296 1 219 88 0 0 chr12 919537 919571 -142866884 + (T)n Simple_repeat Simple_repeat 1 34 0 379 203 14 0 chr12 919640 919714 -142866741 + Charlie1 DNA MER1_type 46 120 -2641 1102 139 12 6 chr12 919716 919881 -142866574 + AluJo SINE Alu 127 292 -20 337 216 137 10 chr12 919881 919983 -142866472 + Charlie1 DNA MER1_type 2149 2263 -498 1280 26 0 7 chr12 920021 920174 -142866281 - L1PA4 LINE L1 -3 6152 6001 844 195 113 15 chr12 920201 920396 -142866059 - MER58A DNA MER1_type 0 224 11 251 257 114 0 chr12 920657 920762 -142865693 + L1MC4a LINE L1 5371 5487 -2321 408 216 84 96 chr12 920899 920916 -142865539 + L1MC4a LINE L1 5716 5732 -2076 1879 172 0 7 chr12 920916 921219 -142865236 + AluJb SINE Alu 1 301 -11 408 216 84 96 chr12 921219 921368 -142865087 + L1MC4a LINE L1 5732 5880 -1928 2343 82 0 0 chr12 921485 921791 -142864664 + AluY SINE Alu 1 306 0 2215 123 0 0 chr12 921879 922172 -142864283 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr12 923358 923390 -142863065 + AT_rich Low_complexity Low_complexity 1 32 0 2277 131 0 0 chr12 923390 923702 -142862753 - AluSx SINE Alu 0 312 1 477 0 0 0 chr12 924830 924883 -142861572 + (CA)n Simple_repeat Simple_repeat 1 53 0 236 198 74 0 chr12 924966 925047 -142861408 + (TTA)n Simple_repeat Simple_repeat 1 87 0 2403 92 3 0 chr12 926146 926449 -142860006 + AluY SINE Alu 1 304 -7 971 169 0 41 chr12 926516 926688 -142859767 - AluJo/FRAM SINE Alu -18 294 130 2224 96 7 3 chr12 926691 926982 -142859473 - AluSx SINE Alu -20 292 1 1215 125 171 75 chr12 927242 927523 -142858932 - AluSx SINE Alu -4 308 1 201 74 0 0 chr12 927951 927978 -142858477 + (T)n Simple_repeat Simple_repeat 1 27 0 1961 91 4 8 chr12 927978 928230 -142858225 - AluSq SINE Alu -62 251 1 1924 147 0 17 chr12 929958 930257 -142856198 + AluJb SINE Alu 1 294 -18 182 250 0 0 chr12 930748 930788 -142855667 + L2 LINE L2 3224 3263 -9 221 219 0 55 chr12 932730 932803 -142853652 - L2 LINE L2 -36 3277 3209 1295 181 82 25 chr12 934699 934980 -142851475 + AluJo SINE Alu 1 297 -15 2224 111 3 7 chr12 934980 935277 -142851178 + AluSx SINE Alu 1 297 -15 195 42 0 0 chr12 938637 938661 -142847794 + (CCA)n Simple_repeat Simple_repeat 3 26 0 21 0 0 0 chr12 939217 939238 -142847217 + AT_rich Low_complexity Low_complexity 1 21 0 1895 116 10 43 chr12 939675 939976 -142846479 + AluSx SINE Alu 1 291 -21 945 149 124 146 chr12 940105 940461 -142845994 + MER46B DNA MER2_type 5 227 -9 731 228 25 0 chr12 940522 940684 -142845771 + FRAM SINE Alu 1 166 0 1574 147 90 4 chr12 942817 943096 -142843359 + AluJb SINE Alu 1 303 -9 2221 114 10 7 chr12 943651 943958 -142842497 - AluSx SINE Alu -4 308 1 200 269 0 0 chr12 944322 944389 -142842066 + (CTG)n Simple_repeat Simple_repeat 3 69 0 647 143 109 0 chr12 945543 945662 -142840793 + AluJb SINE Alu 2 133 -179 1236 109 0 75 chr12 945692 945893 -142840562 + AluSg/x SINE Alu 109 294 -18 890 267 99 44 chr12 945903 946330 -142840125 + L1ME3A LINE L1 5470 5962 -208 1822 141 6 44 chr12 946330 946650 -142839805 - AluJo SINE Alu -4 308 1 890 267 99 44 chr12 946650 946856 -142839599 + L1ME3A LINE L1 5962 6155 -15 628 161 28 133 chr12 946897 947108 -142839347 + L1ME3A LINE L1 5902 6090 -80 2078 119 25 0 chr12 947115 947400 -142839055 + AluSq SINE Alu 11 302 -11 2142 99 3 20 chr12 947405 947708 -142838747 + AluSx SINE Alu 1 298 -14 2032 135 7 7 chr12 947712 948009 -142838446 + AluSq SINE Alu 1 297 -16 1269 109 0 0 chr12 948009 948174 -142838281 + AluSg/x SINE Alu 134 298 -14 2391 224 70 19 chr12 948181 948216 -142838239 + L1M4 LINE L1 2379 2411 -3735 2499 60 0 13 chr12 948216 948518 -142837937 + AluY SINE Alu 1 298 -13 2391 224 70 19 chr12 948518 949268 -142837187 + L1M4 LINE L1 2411 3204 -2942 1596 141 0 20 chr12 949281 949529 -142836926 + AluJb SINE Alu 16 258 -54 527 160 0 84 chr12 949533 949629 -142836826 + AluJb SINE Alu 190 274 -38 216 0 0 0 chr12 949629 949653 -142836802 + (AGATG)n Simple_repeat Simple_repeat 5 28 0 527 160 0 84 chr12 949653 949687 -142836768 + AluJb SINE Alu 274 309 -3 3187 146 32 53 chr12 949688 949765 -142836690 + L1MB2 LINE L1 5319 5396 -775 2288 103 3 0 chr12 949765 950057 -142836398 + AluSx SINE Alu 1 293 -19 3187 146 32 53 chr12 950057 950643 -142835812 + L1MB2 LINE L1 5396 5968 -203 515 183 77 0 chr12 950651 950755 -142835700 + FLAM_C SINE Alu 22 133 -10 1879 139 0 80 chr12 950760 951099 -142835356 - AluSx SINE Alu 0 312 1 250 153 0 0 chr12 951118 951174 -142835281 + FAM SINE Alu 126 169 -6 1313 168 30 99 chr12 951202 951535 -142834920 + AluJo SINE Alu 3 312 0 704 176 204 0 chr12 951535 951711 -142834744 + L1MB2 LINE L1 5960 6171 0 343 147 18 110 chr12 951705 951717 -142834738 + L1M4 LINE L1 3684 3696 -2450 * 2133 105 13 10 chr12 951717 952022 -142834433 + AluSx SINE Alu 1 306 -6 343 147 18 110 chr12 952022 952069 -142834386 + L1M4 LINE L1 3696 3731 -2415 2351 72 3 7 chr12 952069 952360 -142834095 + AluSg SINE Alu 1 290 -20 343 147 18 110 chr12 952360 952408 -142834047 + L1M4 LINE L1 3731 3782 -2364 2513 60 0 0 chr12 952888 953190 -142833265 - AluY SINE Alu -9 302 1 312 241 37 37 chr12 953588 953696 -142832759 - L2 LINE L2 -3 3310 3203 2222 159 56 31 chr12 953962 954151 -142832304 + MSTB LTR MaLR 2 185 -241 1844 153 0 34 chr12 954151 954472 -142831983 + AluJo SINE Alu 1 310 -2 2222 159 56 31 chr12 954472 954696 -142831759 + MSTB LTR MaLR 185 425 -1 233 266 91 106 chr12 955360 955525 -142830930 + Charlie2 DNA MER1_type 117 280 -2502 2303 102 3 0 chr12 955525 955819 -142830636 + AluSx SINE Alu 1 295 -17 233 266 91 106 chr12 955819 955852 -142830603 + Charlie2 DNA MER1_type 280 312 -2470 2149 194 47 118 chr12 955868 956170 -142830285 + Charlie2 DNA MER1_type 1872 2194 -668 2332 82 0 16 chr12 956170 956473 -142829982 + AluSp SINE Alu 1 298 -15 2149 194 47 118 chr12 956473 956853 -142829602 + Charlie2 DNA MER1_type 2194 2479 -383 1668 154 0 4 chr12 956853 957106 -142829349 - AluJo SINE Alu -60 252 1 2149 194 47 118 chr12 957106 957311 -142829144 + Charlie2 DNA MER1_type 2479 2697 -165 379 209 338 14 chr12 957311 957459 -142828996 - MER6B DNA MER2_type 0 210 15 * 736 185 39 22 chr12 957448 957626 -142828829 + Charlie2 DNA MER1_type 2680 2860 -2 841 117 0 17 chr12 958209 958329 -142828126 + FRAM SINE Alu 37 154 -22 2093 128 0 13 chr12 958625 958931 -142827524 + AluJb SINE Alu 1 302 -10 432 126 207 0 chr12 959339 959426 -142827029 - Charlie1 DNA MER1_type -33 2728 2624 * 880 231 60 5 chr12 959425 959624 -142826831 - Charlie1 DNA MER1_type -2551 210 1 1028 85 8 0 chr12 960017 960147 -142826308 + AluSg SINE Alu 1 131 -179 2309 105 0 0 chr12 960155 960450 -142826005 + AluSx SINE Alu 3 297 -15 2255 96 7 3 chr12 961117 961418 -142825037 + AluY SINE Alu 1 302 -9 1005 183 177 19 chr12 961678 961780 -142824675 + MER46B DNA MER2_type 2 87 -2644 1773 145 69 7 chr12 961780 962069 -142824386 + AluJo SINE Alu 1 307 -5 1005 183 177 19 chr12 962069 962125 -142824330 + MER46B DNA MER2_type 87 133 -2598 2291 91 20 0 chr12 962125 962422 -142824033 + AluSx SINE Alu 1 303 -9 1005 183 177 19 chr12 962422 962573 -142823882 + MER46B DNA MER2_type 133 236 0 884 129 43 0 chr12 962581 962721 -142823734 + L1MA9 LINE L1 6162 6307 -5 2226 111 0 7 chr12 962771 963060 -142823395 + AluSx SINE Alu 1 287 -25 190 176 0 0 chr12 963286 963320 -142823135 + MER5A DNA MER1_type 21 54 -135 1233 167 17 25 chr12 963322 963562 -142822893 - AluJo SINE Alu -11 301 64 2401 91 0 0 chr12 964148 964446 -142822009 + AluSg SINE Alu 1 298 -12 1276 119 11 0 chr12 964446 964622 -142821833 + AluSg/x SINE Alu 134 311 -1 680 188 100 109 chr12 964922 965151 -142821304 + MIR SINE MIR 21 247 -15 237 311 40 0 chr12 965182 965256 -142821199 - L2 LINE L2 -5 3308 3232 1302 163 111 12 chr12 965260 965341 -142821114 + AluJo SINE Alu 29 101 -211 2334 87 0 3 chr12 965341 965639 -142820816 + AluSg SINE Alu 1 297 -13 1302 163 111 12 chr12 965639 965809 -142820646 + AluJo SINE Alu 101 305 -7 947 277 83 75 chr12 965820 966545 -142819910 - L2 LINE L2 -681 2633 1903 2092 95 9 54 chr12 966613 966928 -142819527 - AluY SINE Alu -10 301 1 1135 158 0 12 chr12 966962 967133 -142819322 + FAM SINE Alu 1 169 -6 1030 180 40 40 chr12 967459 967659 -142818796 - AluJo SINE Alu -25 287 88 274 367 109 9 chr12 967662 967891 -142818564 + L3 LINE CR1 255 506 -1071 180 282 56 28 chr12 967945 968016 -142818439 + L3 LINE CR1 502 574 -1003 700 339 42 44 chr12 968033 968490 -142817965 - L2 LINE L2 -2595 719 264 213 290 171 38 chr12 968490 968783 -142817672 + L2 LINE L2 1635 1966 -1348 1063 255 199 8 chr12 968783 969264 -142817191 - MLT1F1 LTR MaLR 0 567 1 409 339 189 13 chr12 969264 969380 -142817075 + L2 LINE L2 1962 2056 -1258 2472 92 0 0 chr12 969380 969686 -142816769 - AluSx SINE Alu -6 306 1 409 339 189 13 chr12 969686 970020 -142816435 + L2 LINE L2 2056 2491 -823 2164 81 63 0 chr12 970136 970421 -142816034 - AluSx SINE Alu -9 303 1 221 262 0 0 chr12 970423 970465 -142815990 + L3 LINE CR1 1528 1569 -8 2092 137 0 3 chr12 970729 971029 -142815426 + AluSx SINE Alu 1 299 -13 1516 125 10 0 chr12 971091 971299 -142815156 + AluSc SINE Alu 83 292 -17 21 0 0 0 chr12 971418 971439 -142815016 + AT_rich Low_complexity Low_complexity 1 21 0 2011 94 62 0 chr12 971440 971716 -142814739 - AluSx SINE Alu -8 304 12 791 247 0 18 chr12 971716 971882 -142814573 - AluJo SINE Alu -148 164 2 2101 212 84 29 chr12 972134 972379 -142814076 - L1ME3A LINE L1 -219 5951 5721 2160 127 0 3 chr12 972379 972687 -142813768 - AluSx SINE Alu -5 307 1 2036 136 6 40 chr12 972689 973012 -142813443 - AluJb SINE Alu 0 312 1 2101 212 84 29 chr12 973012 973479 -142812976 - L1ME3A LINE L1 -449 5721 5197 996 116 0 20 chr12 973494 973640 -142812815 + FLAM_C SINE Alu 1 143 0 1101 265 119 13 chr12 973659 974195 -142812260 - L1ME3A LINE L1 -1526 4620 4028 2381 210 27 10 chr12 974195 974676 -142811779 - REP3 LTR ERV 0 562 74 332 272 124 18 chr12 974708 974877 -142811578 - L1ME3A LINE L1 -2114 4032 3846 2378 104 0 0 chr12 974921 975230 -142811225 - AluSg SINE Alu -1 309 1 387 0 0 0 chr12 975332 975375 -142811080 + (TG)n Simple_repeat Simple_repeat 2 44 0 1684 155 42 0 chr12 975701 975966 -142810489 - AluJb SINE Alu -36 276 1 22 0 0 0 chr12 976231 976253 -142810202 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr12 976414 976451 -142810004 + AT_rich Low_complexity Low_complexity 1 37 0 2408 78 3 0 chr12 976487 976782 -142809673 - AluSx SINE Alu -16 296 1 1004 199 130 4 chr12 976795 976926 -142809529 - AluJo SINE Alu -24 288 175 1325 200 51 44 chr12 976926 977221 -142809234 - AluJb SINE Alu -15 297 1 1004 199 130 4 chr12 977221 977320 -142809135 - AluJo SINE Alu -137 175 29 246 86 21 75 chr12 977451 977544 -142808911 + (TA)n Simple_repeat Simple_repeat 2 89 0 361 303 21 28 chr12 977701 977843 -142808612 - L2 LINE L2 -476 2838 2698 480 100 0 0 chr12 977986 978066 -142808389 + (TC)n Simple_repeat Simple_repeat 1 80 0 261 0 0 0 chr12 978066 978095 -142808360 + (TG)n Simple_repeat Simple_repeat 2 30 0 513 211 0 37 chr12 978189 978298 -142808157 - MER3 DNA MER1_type -2 207 103 438 233 78 0 chr12 978401 978504 -142807951 - MER3 DNA MER1_type -98 111 1 1174 153 74 114 chr12 978799 978969 -142807486 - Charlie5 DNA MER1_type -1 2623 2448 1016 90 0 15 chr12 978969 979102 -142807353 - FLAM_C SINE Alu -2 131 1 1174 153 74 114 chr12 979102 979336 -142807119 - Charlie5 DNA MER1_type -176 2448 2235 621 159 32 56 chr12 979339 979465 -142806990 - Charlie5 DNA MER1_type -2489 123 1 1987 113 0 7 chr12 979703 979978 -142806477 - AluSx SINE Alu -15 297 25 236 268 99 0 chr12 980239 980310 -142806145 + MER117 DNA MER1_type 15 92 -105 1783 148 19 42 chr12 980385 980695 -142805760 - AluJb SINE Alu -9 303 1 1837 145 13 43 chr12 980841 981144 -142805311 + AluSx SINE Alu 1 294 -18 2051 92 60 0 chr12 981661 981943 -142804512 - AluSc SINE Alu -10 299 1 237 143 54 54 chr12 981994 982050 -142804405 - MER46C DNA MER2_type -46 292 237 222 116 0 0 chr12 982908 982951 -142803504 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1282 180 78 35 chr12 982953 983208 -142803247 - AluJo SINE Alu -44 268 3 1922 165 0 0 chr12 983362 983665 -142802790 - AluSx SINE Alu -9 303 1 2236 126 7 0 chr12 983943 984253 -142802202 - AluSx SINE Alu 0 312 1 1852 150 41 0 chr12 984255 984548 -142801907 - AluSx SINE Alu -7 305 1 497 233 89 47 chr12 984594 984830 -142801625 - L1MC/D LINE L1 -1989 5819 5574 2213 109 0 25 chr12 985820 986140 -142800315 - AluSx SINE Alu 0 312 1 2322 109 0 0 chr12 986184 986486 -142799969 - AluSx SINE Alu -10 302 1 2235 112 0 3 chr12 986685 986988 -142799467 - AluSx SINE Alu -10 302 1 2075 104 13 41 chr12 987388 987704 -142798751 - AluSx SINE Alu -5 307 1 326 347 132 12 chr12 987909 988314 -142798141 - L2 LINE L2 -14 3258 2773 1728 180 0 3 chr12 988325 988614 -142797841 - AluJb SINE Alu -24 288 1 962 213 53 9 chr12 988615 988840 -142797615 - Charlie1 DNA MER1_type -2522 239 5 1467 159 3 123 chr12 988903 989243 -142797212 - AluJo SINE Alu -13 299 1 1776 197 185 25 chr12 989308 989364 -142797091 - MLT1F1 LTR MaLR -8 559 513 2100 131 0 0 chr12 989364 989672 -142796783 + AluSx SINE Alu 1 308 0 1776 197 185 25 chr12 989672 990096 -142796359 - MLT1F1 LTR MaLR -54 513 1 2342 91 3 0 chr12 990398 990694 -142795761 - AluSg1 SINE Alu -12 297 1 1650 174 13 29 chr12 990957 991090 -142795365 + AluJb SINE Alu 1 135 -177 2504 50 0 7 chr12 991090 991388 -142795067 + AluY SINE Alu 1 296 -15 207 0 0 0 chr12 991391 991414 -142795041 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1650 174 13 29 chr12 991414 991587 -142794868 + AluJb SINE Alu 137 306 -6 2327 71 51 0 chr12 992345 992641 -142793814 - AluY SINE Alu 0 311 1 881 205 49 0 chr12 993020 993225 -142793230 - Charlie1 DNA MER1_type 0 2761 2547 2204 106 7 3 chr12 993241 993542 -142792913 - AluSq SINE Alu -11 302 1 1149 130 0 0 chr12 993923 994084 -142792371 - AluSx SINE Alu -151 161 1 2039 105 0 7 chr12 994095 994372 -142792083 - AluY SINE Alu -36 275 1 2068 120 33 0 chr12 994374 994673 -142791782 - AluSq SINE Alu -4 309 1 25 0 0 0 chr12 994676 994701 -142791754 + AT_rich Low_complexity Low_complexity 1 25 0 2280 113 0 3 chr12 995069 995378 -142791077 - AluSg SINE Alu -2 308 1 758 271 123 39 chr12 995515 995873 -142790582 + MER20B DNA MER1_type 44 431 -352 944 183 74 26 chr12 995915 996144 -142790311 + MER20B DNA MER1_type 544 783 0 420 306 50 6 chr12 996163 996323 -142790132 + MIR3 SINE MIR 37 203 -5 189 310 55 35 chr12 996502 996647 -142789808 + MIR SINE MIR 106 253 -9 22 0 0 0 chr12 997173 997195 -142789260 + AT_rich Low_complexity Low_complexity 1 22 0 408 286 95 14 chr12 997543 997690 -142788765 - MIR SINE MIR -38 224 66 22 35 0 0 chr12 997767 997796 -142788659 + AT_rich Low_complexity Low_complexity 1 29 0 1172 171 101 19 chr12 998398 998655 -142787800 + MER58B DNA MER1_type 53 330 -11 663 258 154 0 chr12 998686 998907 -142787548 - MIR SINE MIR 0 262 8 848 156 10 116 chr12 1001390 1001589 -142784866 - MER5B DNA MER1_type 0 178 1 253 229 0 16 chr12 1001589 1001643 -142784812 - MER117 DNA MER1_type -139 58 4 2377 71 34 0 chr12 1001783 1002078 -142784377 - AluSq SINE Alu -8 305 1 383 229 95 17 chr12 1002471 1002584 -142783871 - MER5A DNA MER1_type -14 164 43 2049 81 0 4 chr12 1002788 1003049 -142783406 + AluSc SINE Alu 30 289 -20 532 261 75 25 chr12 1003182 1003343 -142783112 - MER5B DNA MER1_type -3 175 7 1601 160 0 97 chr12 1003443 1003774 -142782681 + AluJb SINE Alu 1 299 -3 1042 144 86 6 chr12 1004104 1004278 -142782177 - MER5A DNA MER1_type 0 189 2 2245 108 0 0 chr12 1004724 1005021 -142781434 + AluSq SINE Alu 1 297 -16 222 270 0 32 chr12 1006759 1006822 -142779633 - L2 LINE L2 -2 3311 3251 338 184 132 0 chr12 1007007 1007083 -142779372 + FRAM SINE Alu 56 141 -25 216 0 0 0 chr12 1007088 1007112 -142779343 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2132 139 7 0 chr12 1007206 1007516 -142778939 - AluSx SINE Alu 0 312 1 398 271 177 6 chr12 1007712 1007893 -142778562 + MIR SINE MIR 8 219 -43 989 96 0 22 chr12 1007898 1008061 -142778394 + FLAM_C SINE Alu 1 160 0 21 0 0 0 chr12 1008108 1008129 -142778326 + AT_rich Low_complexity Low_complexity 1 21 0 2156 179 36 116 chr12 1008327 1008992 -142777463 - LTR9 LTR ERV1 0 612 1 1699 149 64 14 chr12 1009166 1009462 -142776993 - AluSx SINE Alu -1 311 1 2257 117 0 0 chr12 1009622 1009930 -142776525 - AluSc SINE Alu -1 308 1 9138 141 9 96 chr12 1010000 1010826 -142775629 - L1M LINE L1 -837 5309 4413 829 186 0 14 chr12 1010826 1010971 -142775484 - FRAM SINE Alu -12 164 22 9138 141 9 96 chr12 1010971 1012081 -142774374 - L1M LINE L1 -1733 4413 3444 2408 70 6 70 chr12 1012081 1012212 -142774243 - THE1A LTR MaLR 0 355 217 3292 43 0 0 chr12 1012212 1012584 -142773871 - L1PA3 LINE L1 0 6155 5784 2408 70 6 70 chr12 1012584 1012761 -142773694 - THE1A LTR MaLR -138 217 70 2447 60 3 10 chr12 1012761 1013063 -142773392 - AluY SINE Alu -11 300 1 2408 70 6 70 chr12 1013063 1013108 -142773347 - THE1A LTR MaLR -285 70 24 1106 150 123 0 chr12 1013124 1013344 -142773111 - L1 LINE L1 -2698 4150 3904 1695 164 3 24 chr12 1013351 1013644 -142772811 + AluSx SINE Alu 1 287 -25 261 246 0 0 chr12 1013738 1013799 -142772656 + CT-rich Low_complexity Low_complexity 2 62 0 * 968 192 40 1 chr12 1013780 1014006 -142772449 - L1 LINE L1 -2963 3885 3653 2377 79 26 0 chr12 1014015 1014318 -142772137 - AluY SINE Alu 0 311 1 817 138 0 48 chr12 1014318 1014453 -142772002 - FLAM_C SINE Alu -177 135 6 2737 204 70 5 chr12 1014460 1015103 -142771352 - L1 LINE L1 -3186 3662 2978 1178 121 0 29 chr12 1015103 1015277 -142771178 - AluSq SINE Alu -16 297 129 210 91 0 0 chr12 1015277 1015310 -142771145 + (TATG)n Simple_repeat Simple_repeat 2 34 0 2033 128 0 3 chr12 1015314 1015602 -142770853 - AluSx SINE Alu -25 287 1 4511 152 54 151 chr12 1015603 1016261 -142770194 - L1 LINE L1 -3862 2986 2265 687 176 37 7 chr12 1016261 1016397 -142770058 - FAM SINE Alu -11 174 35 4511 152 54 151 chr12 1016397 1016447 -142770008 - L1 LINE L1 -4583 2265 2212 1452 187 28 21 chr12 1016447 1016731 -142769724 - AluJo SINE Alu -24 288 3 4511 152 54 151 chr12 1016731 1017029 -142769426 - L1 LINE L1 -4636 2212 1886 2476 99 0 0 chr12 1017029 1017341 -142769114 - AluSx SINE Alu 0 312 1 4511 152 54 151 chr12 1017341 1017521 -142768934 - L1 LINE L1 -4962 1886 1845 372 22 0 0 chr12 1017521 1017566 -142768889 + (TG)n Simple_repeat Simple_repeat 2 46 0 4511 152 54 151 chr12 1017566 1017848 -142768607 - L1 LINE L1 -5003 1845 1537 1963 194 11 3 chr12 1017848 1018224 -142768231 + L1MB5 LINE L1 5788 6166 -8 2319 110 0 0 chr12 1018595 1018895 -142767560 + AluSx SINE Alu 1 300 -12 1158 161 0 0 chr12 1018980 1019148 -142767307 - AluJo SINE Alu -144 168 1 2380 86 7 0 chr12 1019967 1020269 -142766186 - AluSg SINE Alu -5 305 2 290 286 51 51 chr12 1021544 1021631 -142764824 + L1MB8 LINE L1 5710 5796 -382 998 232 100 16 chr12 1021631 1021941 -142764514 - MER46C DNA MER2_type 0 338 3 290 286 51 51 chr12 1021941 1022108 -142764347 + L1MB8 LINE L1 5795 5964 -214 1781 153 58 7 chr12 1022331 1022626 -142763829 - AluJo SINE Alu -2 310 1 242 239 53 35 chr12 1022724 1022743 -142763712 - L1MA10 LINE L1 -1 6333 6315 2631 185 98 102 chr12 1022743 1022844 -142763611 - L1ME2 LINE L1 -10 6154 6054 238 128 0 0 chr12 1022844 1022883 -142763572 - MER3 DNA MER1_type -160 49 11 2631 185 98 102 chr12 1022883 1023790 -142762665 - L1ME2 LINE L1 -110 6054 5129 2332 107 0 0 chr12 1023859 1024159 -142762296 + AluSx SINE Alu 1 300 -12 2112 130 0 0 chr12 1024734 1025033 -142761422 - AluSx SINE Alu -13 299 1 694 126 0 0 chr12 1025061 1025156 -142761299 + AluY SINE Alu 2 96 -222 207 162 0 0 chr12 1025279 1025316 -142761139 + G-rich Low_complexity Low_complexity 2 38 0 2123 120 23 0 chr12 1025322 1025623 -142760832 + AluSx SINE Alu 3 310 -2 560 185 9 9 chr12 1025909 1026017 -142760438 + MLT1C LTR MaLR 360 467 0 412 298 129 28 chr12 1026110 1026629 -142759826 - L1ME LINE L1 -442 5720 5152 2143 109 0 7 chr12 1026641 1026925 -142759530 + AluSx SINE Alu 1 282 -30 359 288 61 102 chr12 1027664 1027754 -142758701 + MLT1L LTR MaLR 1 93 -522 2264 111 3 3 chr12 1027754 1028061 -142758394 - AluSg SINE Alu -1 309 3 1667 83 0 9 chr12 1028064 1028280 -142758175 - AluSg/x SINE Alu -6 306 93 359 288 61 102 chr12 1028280 1028449 -142758006 + MLT1L LTR MaLR 95 253 -362 627 245 43 0 chr12 1028580 1028719 -142757736 + MER45A DNA AcHobo 34 178 0 295 295 76 0 chr12 1028736 1028841 -142757614 + MLT1L LTR MaLR 493 605 -10 2299 95 7 3 chr12 1028842 1029138 -142757317 - AluSq SINE Alu -16 297 1 2461 82 0 25 chr12 1029467 1029785 -142756670 + AluSq SINE Alu 1 310 -3 1925 157 0 13 chr12 1029799 1030111 -142756344 + AluJb SINE Alu 5 312 0 565 240 84 71 chr12 1030206 1030508 -142755947 - MLT1G1 LTR MaLR -64 531 146 2276 102 0 0 chr12 1030508 1030803 -142755652 - AluSq SINE Alu -14 299 5 565 240 84 71 chr12 1030803 1030951 -142755504 - MLT1G1 LTR MaLR -449 146 1 362 297 31 0 chr12 1031420 1031548 -142754907 - MIR SINE MIR -45 217 86 397 298 18 0 chr12 1031619 1031733 -142754722 - L2 LINE L2 -1 3312 3197 1384 185 52 55 chr12 1031865 1032232 -142754223 - MER93b LTR ERV1 -7 366 1 190 219 0 0 chr12 1032234 1032275 -142754180 - L2 LINE L2 -320 2952 2912 1236 281 113 71 chr12 1032417 1032785 -142753670 - L2 LINE L2 -573 2741 2390 1578 150 29 33 chr12 1032785 1033058 -142753397 - AluJo SINE Alu -40 272 1 1236 281 113 71 chr12 1033058 1033327 -142753128 - L2 LINE L2 -924 2390 2134 2425 64 27 0 chr12 1033327 1033624 -142752831 + AluSx SINE Alu 1 305 -7 1236 281 113 71 chr12 1033624 1033661 -142752794 - L2 LINE L2 -1180 2134 2100 1388 202 114 52 chr12 1033661 1033867 -142752588 + MLT1C LTR MaLR 1 193 -274 1828 167 0 16 chr12 1033867 1034172 -142752283 + AluSx SINE Alu 1 300 -12 1388 202 114 52 chr12 1034172 1034405 -142752050 + MLT1C LTR MaLR 193 467 0 1236 281 113 71 chr12 1034405 1034560 -142751895 - L2 LINE L2 -1214 2100 1875 2451 64 3 26 chr12 1034626 1034938 -142751517 - AluY SINE Alu -6 305 1 264 59 0 0 chr12 1034985 1035019 -142751436 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1328 181 3 122 chr12 1035022 1035342 -142751113 - AluJb SINE Alu -19 283 2 548 251 54 35 chr12 1035591 1035794 -142750661 - L2 LINE L2 -2 3311 3105 26 74 0 0 chr12 1035917 1035971 -142750484 + AT_rich Low_complexity Low_complexity 1 54 0 711 241 140 26 chr12 1036116 1036577 -142749878 - L2 LINE L2 -190 3123 2629 1852 131 0 0 chr12 1036578 1036830 -142749625 + AluSx SINE Alu 2 253 -59 1467 196 11 0 chr12 1036901 1037167 -142749288 - AluJo SINE Alu -43 269 1 206 121 0 0 chr12 1037239 1037272 -142749183 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 2234 94 3 0 chr12 1037280 1037568 -142748887 - AluSg SINE Alu -21 289 1 497 206 142 179 chr12 1037794 1037985 -142748470 + MLT1J LTR MaLR 12 209 -302 2013 138 3 3 chr12 1037985 1038275 -142748180 - AluSg SINE Alu -20 290 1 1652 149 46 11 chr12 1038276 1038558 -142747897 - AluJo SINE Alu -20 292 1 497 206 142 179 chr12 1038558 1038849 -142747606 + MLT1J LTR MaLR 208 478 -33 213 271 51 0 chr12 1038988 1039047 -142747408 - L2 LINE L2 -53 3219 3158 2093 141 0 10 chr12 1039390 1039688 -142746767 + AluSx SINE Alu 3 297 -15 839 179 28 0 chr12 1039920 1040065 -142746390 - AluJb SINE Alu -32 280 132 733 176 0 0 chr12 1040079 1040204 -142746251 + AluSc SINE Alu 133 257 -52 414 160 27 0 chr12 1040199 1040274 -142746181 - BC200 scRNA scRNA -123 77 1 * 349 221 0 32 chr12 1040274 1040369 -142746086 - L1ME3A LINE L1 -230 5940 5849 2735 235 20 32 chr12 1040382 1041064 -142745391 + L1M4 LINE L1 9 682 -5860 437 248 111 0 chr12 1041069 1041186 -142745269 + L2 LINE L2 3183 3312 -1 2068 139 21 6 chr12 1041216 1041553 -142744902 - MER2 DNA MER2_type -1 343 2 22 80 0 0 chr12 1041698 1041748 -142744707 + AT_rich Low_complexity Low_complexity 1 50 0 2076 117 3 20 chr12 1041796 1042096 -142744359 + AluJo SINE Alu 1 295 -17 2101 111 6 38 chr12 1042318 1042633 -142743822 + AluSx SINE Alu 1 305 -7 27 29 0 0 chr12 1043848 1043882 -142742573 + AT_rich Low_complexity Low_complexity 1 34 0 2196 39 8 4 chr12 1044047 1044306 -142742149 - AluY SINE Alu -18 293 34 403 234 145 69 chr12 1044424 1044714 -142741741 - L2 LINE L2 0 3313 3002 2411 89 3 0 chr12 1044917 1045219 -142741236 - AluSq SINE Alu -10 303 1 1156 117 25 0 chr12 1045221 1045383 -142741072 - AluSg/x SINE Alu -6 304 139 380 64 0 0 chr12 1045421 1045468 -142740987 - MLT1B LTR MaLR 0 390 344 399 107 36 0 chr12 1045476 1045532 -142740923 - MLT1C LTR MaLR -409 58 1 1284 181 17 181 chr12 1045533 1045673 -142740782 - MLT1C-int LTR MaLR -1 1370 1209 1813 167 0 7 chr12 1045673 1045961 -142740494 + AluSx SINE Alu 1 286 -26 1284 181 17 181 chr12 1045961 1046229 -142740226 - MLT1C-int LTR MaLR -162 1209 1029 1108 123 0 25 chr12 1046232 1046434 -142740021 + AluSg/x SINE Alu 134 331 0 371 313 0 18 chr12 1046434 1046577 -142739878 - MLT1B-int LTR MaLR -334 1037 956 286 337 0 0 chr12 1046652 1046753 -142739702 - MLT1B-int LTR MaLR -958 777 677 1591 196 53 4 chr12 1046809 1047278 -142739177 - MLT1B-int LTR MaLR -484 887 238 951 117 5 143 chr12 1047281 1047477 -142738978 - AluJb SINE Alu -10 302 134 2152 131 0 0 chr12 1047477 1047774 -142738681 - AluSx SINE Alu -15 297 1 644 197 8 8 chr12 1047774 1047901 -142738554 - MLT1B-int LTR MaLR -1244 127 1 1449 193 111 14 chr12 1047904 1048035 -142738420 - MLT1B LTR MaLR -3 387 270 2346 94 7 10 chr12 1048035 1048344 -142738111 - AluSq SINE Alu -5 308 1 1449 193 111 14 chr12 1048344 1048565 -142737890 - MLT1B LTR MaLR -120 270 1 2054 148 15 38 chr12 1048595 1048825 -142737630 - L1MB3 LINE L1 -1 6182 5963 2154 107 3 13 chr12 1048825 1049124 -142737331 - AluSq SINE Alu -17 296 1 2054 148 15 38 chr12 1049124 1049285 -142737170 - L1MB3 LINE L1 -220 5963 5800 2506 61 0 3 chr12 1049293 1049589 -142736866 - AluY SINE Alu -16 295 1 1186 83 0 0 chr12 1049589 1049733 -142736722 - AluY SINE Alu -167 144 1 1230 175 22 11 chr12 1049737 1049770 -142736685 - L1MB3 LINE L1 -978 5168 5137 1665 191 0 13 chr12 1049770 1050069 -142736386 - AluJo SINE Alu -17 295 1 1230 175 22 11 chr12 1050069 1050303 -142736152 - L1MB3 LINE L1 -1009 5137 4898 180 0 0 0 chr12 1050303 1050323 -142736132 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1471 133 18 0 chr12 1050337 1050563 -142735892 - AluSq SINE Alu -83 230 1 2418 88 3 0 chr12 1050563 1050858 -142735597 - AluSp SINE Alu -17 296 1 818 169 0 0 chr12 1050870 1050988 -142735467 - FLAM_C SINE Alu -25 118 1 1743 164 10 10 chr12 1050991 1051284 -142735171 - AluJo SINE Alu -14 298 6 307 284 55 0 chr12 1051478 1051587 -142734868 - HAL1 LINE L1 -701 1806 1692 2266 98 13 13 chr12 1051588 1051893 -142734562 - AluSq SINE Alu -8 305 1 376 226 226 8 chr12 1051894 1052151 -142734304 - HAL1 LINE L1 -1010 1497 1185 1910 179 0 3 chr12 1052174 1052486 -142733969 - AluJb SINE Alu -1 311 1 354 136 0 34 chr12 1052489 1052548 -142733907 - Alu SINE Alu -2 300 244 338 163 0 0 chr12 1052545 1052594 -142733861 - Alu SINE Alu -254 49 1 * 933 241 0 19 chr12 1052597 1052813 -142733642 - AluJb SINE Alu -14 298 87 247 297 280 3 chr12 1052815 1053108 -142733347 - HAL1 LINE L1 -1357 1150 777 2323 170 28 35 chr12 1053108 1053568 -142732887 - MSTB2 LTR MaLR 0 457 1 289 329 13 0 chr12 1054037 1054116 -142732339 - HAL1 LINE L1 -2427 80 1 324 303 116 7 chr12 1054294 1054449 -142732006 - MIR3 SINE MIR -36 172 1 264 30 0 0 chr12 1055559 1055592 -142730863 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr12 1055690 1055718 -142730737 + GC_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr12 1055764 1055810 -142730645 + GC_rich Low_complexity Low_complexity 1 46 0 286 224 9 19 chr12 1055869 1055976 -142730479 + (CGG)n Simple_repeat Simple_repeat 2 107 0 1299 126 0 6 chr12 1058662 1058837 -142727618 - AluSx SINE Alu -138 174 1 1888 200 28 45 chr12 1058849 1059023 -142727432 + LTR40c LTR ERVL 35 210 -255 2445 48 31 0 chr12 1059023 1059312 -142727143 + AluY SINE Alu 1 298 -13 1888 200 28 45 chr12 1059312 1059562 -142726893 + LTR40c LTR ERVL 210 452 -13 718 205 0 0 chr12 1059695 1059812 -142726643 - FLAM_C SINE Alu -25 118 2 313 163 50 75 chr12 1059813 1059893 -142726562 + MER112 DNA MER1_type 38 115 -145 238 233 17 0 chr12 1059893 1059953 -142726502 - MLT1F1 LTR MaLR -7 560 500 342 271 0 0 chr12 1060039 1060109 -142726346 + MER112 DNA MER1_type 186 255 -5 2322 75 56 31 chr12 1060124 1060262 -142726193 + THE1C LTR MaLR 8 141 -234 1478 131 186 8 chr12 1060262 1060514 -142725941 - AluSg1 SINE Alu -12 297 1 2322 75 56 31 chr12 1060514 1060734 -142725721 + THE1C LTR MaLR 141 375 0 2037 140 3 0 chr12 1061695 1061995 -142724460 + AluJb SINE Alu 1 301 -11 180 152 0 0 chr12 1062426 1062459 -142723996 + A-rich Low_complexity Low_complexity 1 33 0 992 149 11 6 chr12 1062508 1062683 -142723772 - MER2 DNA MER2_type -137 208 33 409 312 48 16 chr12 1062938 1063249 -142723206 - L1M4 LINE L1 -861 5285 4965 2178 143 22 22 chr12 1063325 1063391 -142723064 - THE1B LTR MaLR 0 364 299 2088 130 10 0 chr12 1063391 1063692 -142722763 - AluSq SINE Alu -9 304 1 2178 143 22 22 chr12 1063692 1063989 -142722466 - THE1B LTR MaLR -64 300 1 583 231 124 0 chr12 1064182 1064368 -142722087 - MER46C DNA MER2_type -129 209 1 322 240 30 10 chr12 1064392 1064492 -142721963 - L1M4 LINE L1 -1429 4717 4616 322 281 104 50 chr12 1064551 1064975 -142721480 - L1M4 LINE L1 -1543 4603 4157 799 182 0 0 chr12 1064975 1065107 -142721348 - FLAM_C SINE Alu 0 133 2 229 243 0 29 chr12 1066393 1066463 -142719992 + T-rich Low_complexity Low_complexity 1 68 0 2081 98 35 0 chr12 1066669 1066956 -142719499 + AluSx SINE Alu 1 297 -15 2351 92 0 0 chr12 1067341 1067636 -142718819 - AluSx SINE Alu -9 303 9 1946 144 28 51 chr12 1067955 1068037 -142718418 + MER7A DNA MER2_type 2 84 -2954 1592 167 30 17 chr12 1068037 1068337 -142718118 + AluJb SINE Alu 1 304 -8 1946 144 28 51 chr12 1068337 1068609 -142717846 + MER7A DNA MER2_type 84 346 0 522 279 57 13 chr12 1069438 1069596 -142716859 + MER5A DNA MER1_type 1 165 -24 2202 96 3 20 chr12 1069641 1069943 -142716512 - AluSg SINE Alu -11 299 3 216 259 19 0 chr12 1070201 1070255 -142716200 + MER5A DNA MER1_type 135 189 0 2031 142 3 19 chr12 1070461 1070636 -142715819 - AluSx SINE Alu -6 306 137 2370 91 0 3 chr12 1070636 1070932 -142715523 - AluY SINE Alu -16 295 1 2031 142 3 19 chr12 1070932 1071067 -142715388 - AluSx SINE Alu -175 137 1 1084 131 12 0 chr12 1071067 1071227 -142715228 - AluSg/x SINE Alu -17 293 132 2276 94 10 3 chr12 1071227 1071526 -142714929 - AluSx SINE Alu -11 301 1 778 211 0 0 chr12 1071891 1072024 -142714431 + FLAM_A SINE Alu 1 133 0 26 30 0 0 chr12 1072024 1072057 -142714398 + AT_rich Low_complexity Low_complexity 1 33 0 2503 58 0 0 chr12 1073237 1073531 -142712924 + AluY SINE Alu 1 294 -17 2254 103 0 3 chr12 1073971 1074272 -142712183 - AluSq SINE Alu -13 300 1 300 240 217 16 chr12 1075106 1075235 -142711220 + L3 LINE CR1 1134 1288 -289 2350 71 0 7 chr12 1075359 1075656 -142710799 + AluY SINE Alu 1 295 -16 198 0 0 0 chr12 1075660 1075682 -142710773 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 446 269 38 19 chr12 1075682 1075842 -142710613 + AluJb SINE Alu 130 292 -20 891 79 67 79 chr12 1077304 1077482 -142708973 - Tigger2a DNA MER2_type -57 387 212 1912 118 0 4 chr12 1077485 1077748 -142708707 + AluSc SINE Alu 3 264 -45 1114 167 17 43 chr12 1077799 1078033 -142708422 - Tigger2a DNA MER2_type -206 228 1 2211 108 0 0 chr12 1078455 1078750 -142707705 - AluSg SINE Alu 0 310 16 410 332 79 8 chr12 1080608 1080861 -142705594 + L1MB1 LINE L1 5098 5368 -778 275 280 134 25 chr12 1081999 1082156 -142704299 + L1MB1 LINE L1 5575 5748 -2060 1899 155 71 3 chr12 1082196 1082550 -142703905 - L1MB3 LINE L1 -1 6182 5805 2178 78 3 0 chr12 1082563 1082857 -142703598 + THE1A LTR MaLR 1 295 -60 895 122 0 0 chr12 1082854 1082985 -142703470 + THE1A LTR MaLR 223 353 -2 * 405 304 40 16 chr12 1083049 1083174 -142703281 - MIR SINE MIR -61 147 20 477 224 91 91 chr12 1083608 1083713 -142702742 + MIR SINE MIR 53 157 -105 1071 179 52 9 chr12 1083713 1083942 -142702513 + L1MB1 LINE L1 5929 6167 -1 477 224 91 91 chr12 1083942 1084046 -142702409 + MIR SINE MIR 156 262 0 2096 111 4 0 chr12 1084095 1084398 -142702057 - AluSg SINE Alu 0 304 1 1012 70 39 0 chr12 1084398 1084526 -142701929 - AluSg SINE Alu -177 133 1 2234 114 3 10 chr12 1084558 1084864 -142701591 - AluSq SINE Alu -9 304 1 22 0 0 0 chr12 1086487 1086509 -142699946 + AT_rich Low_complexity Low_complexity 1 22 0 1712 149 0 55 chr12 1086745 1087054 -142699401 - AluJo SINE Alu 0 312 21 180 111 0 0 chr12 1087075 1087102 -142699353 + (TTG)n Simple_repeat Simple_repeat 1 27 0 186 133 0 0 chr12 1087544 1087574 -142698881 + (TTA)n Simple_repeat Simple_repeat 2 31 0 180 111 0 0 chr12 1089327 1089354 -142697101 + (TTA)n Simple_repeat Simple_repeat 2 28 0 588 95 0 0 chr12 1091540 1091624 -142694831 + (TTA)n Simple_repeat Simple_repeat 2 85 0 1970 108 41 0 chr12 1091627 1091896 -142694559 - AluSx SINE Alu -32 280 1 260 355 127 23 chr12 1092032 1092252 -142694203 - L2 LINE L2 -260 3053 2811 435 284 90 25 chr12 1092377 1092578 -142693877 - L2 LINE L2 -540 2774 2561 2399 77 0 0 chr12 1092706 1093004 -142693451 - AluSg SINE Alu -12 298 1 622 310 47 7 chr12 1093007 1093304 -142693151 + HsTC2 DNA Tc2 5 313 -1585 561 193 30 86 chr12 1093311 1093386 -142693069 + HsTC2 DNA Tc2 1707 1785 -113 1939 146 17 0 chr12 1093386 1093681 -142692774 + AluSx SINE Alu 1 300 -12 561 193 30 86 chr12 1093681 1093802 -142692653 + HsTC2 DNA Tc2 1785 1892 -6 510 157 0 0 chr12 1094572 1094693 -142691762 + (TA)n Simple_repeat Simple_repeat 1 121 0 2183 115 0 0 chr12 1094730 1095026 -142691429 - AluSx SINE Alu -16 296 1 2080 135 7 3 chr12 1095114 1095417 -142691038 - AluSx SINE Alu -8 304 1 190 210 49 99 chr12 1095450 1095531 -142690924 - L2 LINE L2 -1 3271 3195 1853 122 0 0 chr12 1095858 1096104 -142690351 + AluSx SINE Alu 4 249 -63 1850 158 17 7 chr12 1096638 1096935 -142689520 - AluJb SINE Alu -12 300 1 182 284 21 74 chr12 1097195 1097290 -142689165 - L2 LINE L2 0 3313 3224 304 312 39 44 chr12 1097408 1097613 -142688842 - L1ME3A LINE L1 -5 6165 5962 574 292 91 65 chr12 1097853 1098409 -142688046 - L1MEc LINE L1 -5485 911 326 2194 106 0 13 chr12 1098409 1098720 -142687735 - AluSx SINE Alu -3 309 3 574 292 91 65 chr12 1098720 1098974 -142687481 - L1MEc LINE L1 -6070 326 80 1783 289 116 42 chr12 1099002 1099881 -142686574 - L2 LINE L2 -550 2764 1821 29 0 0 0 chr12 1099895 1099924 -142686531 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr12 1099932 1099957 -142686498 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 238 273 91 9 chr12 1100041 1100151 -142686304 + Charlie2 DNA MER1_type 94 212 -2570 2620 250 180 11 chr12 1100307 1100543 -142685912 - L2 LINE L2 -1 3312 3117 2389 90 0 6 chr12 1100543 1100855 -142685600 - AluSg SINE Alu 0 310 1 2620 250 180 11 chr12 1100855 1101819 -142684636 - L2 LINE L2 -196 3117 1888 642 304 37 72 chr12 1101957 1102440 -142684015 - LTR67 LTR ERVL -87 470 5 501 301 147 6 chr12 1102535 1102691 -142683764 + MER91A DNA MER1_type 19 196 0 198 236 64 91 chr12 1102871 1102981 -142683474 - L2 LINE L2 -1361 1953 1847 731 250 37 28 chr12 1103303 1103519 -142682936 - L2 LINE L2 -4 3309 3092 441 290 20 33 chr12 1103590 1103874 -142682581 - L1MC5 LINE L1 -1 8041 7668 1367 262 118 19 chr12 1103919 1104403 -142682052 - L2 LINE L2 -363 2951 2420 766 171 0 0 chr12 1104426 1104543 -142681912 - FLAM_C SINE Alu -24 119 3 268 242 81 0 chr12 1104543 1104642 -142681813 - L2 LINE L2 -950 2364 2258 255 184 0 0 chr12 1105764 1105813 -142680642 - Charlie1 DNA MER1_type 0 2761 2713 * 663 126 59 0 chr12 1105802 1105921 -142680534 - Charlie1 DNA MER1_type -865 1896 1771 2353 104 0 0 chr12 1106102 1106401 -142680054 + AluSq SINE Alu 1 299 -14 1978 202 99 8 chr12 1106690 1107175 -142679280 + MER82 DNA MER2_type 1 529 -124 2169 106 3 10 chr12 1107410 1107721 -142678734 + AluSp SINE Alu 5 313 0 2215 126 0 0 chr12 1107729 1108038 -142678417 + AluSx SINE Alu 3 311 -1 180 0 0 0 chr12 1108191 1108211 -142678244 + (A)n Simple_repeat Simple_repeat 1 20 0 1270 175 5 22 chr12 1108216 1108439 -142678016 - AluJo SINE Alu -30 282 64 923 291 84 29 chr12 1109091 1109133 -142677322 + LTR16C LTR ERVL 1 39 -452 2299 97 0 7 chr12 1109133 1109431 -142677024 - AluSx SINE Alu -16 296 1 923 291 84 29 chr12 1109431 1109804 -142676651 + LTR16C LTR ERVL 39 439 -52 903 221 120 73 chr12 1109833 1110106 -142676349 + L1MC4 LINE L1 7326 7624 -418 2062 140 3 3 chr12 1110106 1110413 -142676042 + AluSx SINE Alu 1 307 -5 903 221 120 73 chr12 1110413 1110523 -142675932 + L1MC4 LINE L1 7624 7727 -315 598 163 0 0 chr12 1110541 1110633 -142675822 - AluJb SINE Alu -86 226 135 359 288 93 49 chr12 1110636 1110758 -142675697 + L1MC4 LINE L1 7781 7917 -125 297 0 0 0 chr12 1110758 1110791 -142675664 + (TG)n Simple_repeat Simple_repeat 2 34 0 359 288 93 49 chr12 1110791 1110873 -142675582 + L1MC4 LINE L1 7917 7994 -48 1654 154 46 4 chr12 1110875 1111155 -142675300 - AluJo SINE Alu -20 292 1 2358 94 0 0 chr12 1111502 1111801 -142674654 + AluSg SINE Alu 3 301 -9 2157 68 0 54 chr12 1112022 1112345 -142674110 + AluSc SINE Alu 1 307 0 694 257 9 64 chr12 1112561 1112904 -142673551 + L1ME LINE L1 1182 1505 -4879 2303 219 85 22 chr12 1112935 1113029 -142673426 + L1ME LINE L1 4620 4707 -1691 2304 98 0 0 chr12 1113029 1113324 -142673131 - AluSp SINE Alu -18 295 1 2321 105 0 13 chr12 1113329 1113643 -142672812 - AluSq SINE Alu -3 310 1 2303 219 85 22 chr12 1113643 1114173 -142672282 + L1ME LINE L1 4710 5205 -1193 2283 98 0 3 chr12 1114173 1114468 -142671987 + AluSg SINE Alu 1 294 -16 2303 219 85 22 chr12 1114468 1114946 -142671509 + L1ME LINE L1 5205 5803 -595 1982 116 0 20 chr12 1115061 1115355 -142671100 - AluSx SINE Alu -24 288 1 446 277 85 66 chr12 1115359 1115630 -142670825 - L1M4 LINE L1 -867 5279 5004 1751 170 7 0 chr12 1115641 1115941 -142670514 + AluSx SINE Alu 2 303 -9 1478 158 37 30 chr12 1115947 1116245 -142670210 + AluJb SINE Alu 1 300 -12 180 0 0 0 chr12 1116315 1116335 -142670120 + (A)n Simple_repeat Simple_repeat 1 20 0 497 125 38 0 chr12 1116467 1116547 -142669908 - AluS SINE Alu -5 307 225 2305 90 0 0 chr12 1116775 1117074 -142669381 + AluSq SINE Alu 1 299 -14 1175 48 0 0 chr12 1117244 1117391 -142669064 + AluY SINE Alu 158 304 -7 1252 272 108 23 chr12 1117399 1117673 -142668782 - L2 LINE L2 -381 2933 2615 2411 57 0 0 chr12 1117673 1117971 -142668484 - AluY SINE Alu -13 298 1 1252 272 108 23 chr12 1117971 1118086 -142668369 - L2 LINE L2 -699 2615 2511 1933 132 0 3 chr12 1118086 1118381 -142668074 - AluJb SINE Alu -18 294 1 1048 174 23 5 chr12 1118382 1118600 -142667855 - AluJo SINE Alu -5 307 86 873 265 31 0 chr12 1118601 1118797 -142667658 - L2 LINE L2 -796 2518 2317 331 183 50 0 chr12 1118854 1118914 -142667541 + LTR16C LTR ERVL 55 117 -374 268 262 39 19 chr12 1119160 1119263 -142667192 + MLT1L LTR MaLR 507 611 -4 480 236 180 60 chr12 1119279 1119512 -142666943 - MIR SINE MIR 0 262 2 1590 124 93 31 chr12 1119532 1119823 -142666632 + MER44D DNA MER2_type 1 579 -30 818 239 63 43 chr12 1120231 1120532 -142665923 + L2 LINE L2 1717 2023 -1291 211 279 132 0 chr12 1120540 1120608 -142665847 + L2 LINE L2 2131 2207 -1107 1501 226 202 36 chr12 1120615 1120640 -142665815 + MLT1H1 LTR MaLR 1 21 -534 2191 93 0 7 chr12 1120640 1120931 -142665524 + AluSg SINE Alu 1 289 -21 1501 226 202 36 chr12 1120931 1121412 -142665043 + MLT1H1 LTR MaLR 21 555 0 340 242 126 11 chr12 1121412 1121507 -142664948 + L2 LINE L2 2209 2314 -1000 583 181 0 0 chr12 1121512 1121606 -142664849 - LTR16C LTR ERVL 0 491 398 * 1003 270 78 82 chr12 1121601 1122248 -142664207 - MER50 LTR ERV1 -23 711 1 995 250 49 27 chr12 1122248 1122611 -142663844 - LTR16C LTR ERVL -84 407 1 270 184 0 0 chr12 1122633 1122682 -142663773 - L1MC4 LINE L1 -472 7570 7522 426 218 30 20 chr12 1122692 1122793 -142663662 + LTR40a LTR ERVL 4 105 -414 1130 50 0 69 chr12 1122795 1122955 -142663500 - AluSg SINE Alu -161 149 1 310 286 163 0 chr12 1122986 1123084 -142663371 - L1MC4a LINE L1 -1480 6328 6215 1349 140 5 14 chr12 1123121 1123343 -142663112 + AluSx SINE Alu 1 220 -92 1015 80 29 14 chr12 1123343 1123481 -142662974 + AluSg/x SINE Alu 150 289 -21 389 70 18 0 chr12 1123482 1123539 -142662916 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1427 164 33 140 chr12 1123648 1123760 -142662695 + MLT1B LTR MaLR 1 123 -267 1840 147 7 3 chr12 1123760 1124059 -142662396 + AluSx SINE Alu 1 300 -12 1427 164 33 140 chr12 1124059 1124367 -142662088 + MLT1B LTR MaLR 123 376 -14 1916 70 0 0 chr12 1124368 1124609 -142661846 + AluY SINE Alu 1 241 -70 1255 128 5 5 chr12 1124609 1124804 -142661651 + AluSg/x SINE Alu 101 295 -17 778 233 0 0 chr12 1124841 1124987 -142661468 - MLT-int LTR MaLR -128 1607 1462 300 116 58 43 chr12 1125111 1125180 -142661275 + AluSp/q SINE Alu 221 290 -13 1224 111 6 6 chr12 1125214 1125395 -142661060 + AluSx SINE Alu 6 186 -126 2166 94 7 3 chr12 1125449 1125756 -142660699 + AluSq SINE Alu 3 310 -3 1480 166 150 17 chr12 1125898 1126259 -142660196 + L1MB7 LINE L1 5732 6140 -44 1361 125 167 0 chr12 1126260 1126500 -142659955 + AluSg SINE Alu 1 280 -30 1731 137 7 0 chr12 1126549 1126841 -142659614 - AluSx SINE Alu -18 294 1 462 168 0 56 chr12 1126893 1127000 -142659455 - AluJb SINE Alu -7 305 205 2274 60 0 3 chr12 1128132 1128430 -142658025 + AluY SINE Alu 1 297 -14 850 137 0 0 chr12 1128431 1128555 -142657900 - AluJo/FLAM SINE Alu -188 124 1 1019 96 10 96 chr12 1128556 1128765 -142657690 - L1MA7 LINE L1 -122 6169 5979 1022 79 0 0 chr12 1128768 1128894 -142657561 - AluSp SINE Alu -187 126 1 648 163 120 34 chr12 1128895 1128952 -142657503 - L1 LINE L1 -745 5401 5350 1441 180 7 40 chr12 1128952 1129252 -142657203 - AluJo SINE Alu -20 292 3 648 163 120 34 chr12 1129252 1129403 -142657052 - L1 LINE L1 -796 5350 5175 * 785 229 81 34 chr12 1129400 1129723 -142656732 - L1 LINE L1 -2848 3298 2961 1364 189 31 54 chr12 1129790 1130107 -142656348 - AluJo SINE Alu -2 310 1 808 161 0 0 chr12 1130118 1130242 -142656213 - FLAM_A SINE Alu -9 124 1 667 226 48 6 chr12 1130281 1130449 -142656006 + MLT1C LTR MaLR 1 175 -292 1748 138 17 17 chr12 1130453 1130744 -142655711 + AluSq SINE Alu 1 291 -22 254 130 0 19 chr12 1130744 1130798 -142655657 + (GGGAA)n Simple_repeat Simple_repeat 1 53 0 1788 109 4 4 chr12 1131047 1131304 -142655151 - AluSq SINE Alu -56 257 1 269 206 52 0 chr12 1131724 1131816 -142654639 + HsTC2 DNA Tc2 14 1835 -63 192 156 0 0 chr12 1131971 1132003 -142654452 - MIR SINE MIR -152 110 79 2492 34 3 0 chr12 1132029 1132324 -142654131 + AluY SINE Alu 1 296 -15 510 158 18 70 chr12 1132552 1132666 -142653789 + MER3 DNA MER1_type 38 145 -64 302 203 127 17 chr12 1133243 1133361 -142653094 - L1M4 LINE L1 -780 5366 5236 2168 84 0 20 chr12 1133564 1133863 -142652592 + AluSc SINE Alu 3 295 -14 1729 103 58 0 chr12 1133936 1134197 -142652258 + AluSx SINE Alu 11 286 -26 1444 140 17 92 chr12 1134229 1134430 -142652025 - Tigger3(Golem) DNA MER2_type -956 275 101 2007 98 11 0 chr12 1134430 1134706 -142651749 - AluSc SINE Alu -30 279 1 1444 140 17 92 chr12 1134706 1134796 -142651659 - Tigger3(Golem) DNA MER2_type -1130 101 6 1725 156 24 0 chr12 1134840 1135128 -142651327 - AluSg SINE Alu 0 310 16 2004 135 10 0 chr12 1136022 1136318 -142650137 - AluSq SINE Alu -14 299 1 497 125 38 0 chr12 1136546 1136626 -142649829 + AluS SINE Alu 225 307 -5 627 199 0 30 chr12 1189925 1190056 -142596399 + FLAM_C SINE Alu 1 127 -6 266 290 15 8 chr12 1190621 1190752 -142595703 - L1MEc LINE L1 -6224 172 41 30 0 0 0 chr12 1191053 1191083 -142595372 + AT_rich Low_complexity Low_complexity 1 30 0 549 362 72 29 chr12 1191134 1191413 -142595042 + L2 LINE L2 2982 3272 0 775 188 0 0 chr12 1191571 1191704 -142594751 + FLAM_C SINE Alu 1 133 0 2022 143 0 13 chr12 1192003 1192311 -142594144 + AluSx SINE Alu 1 304 -8 25 0 0 0 chr12 1193381 1193406 -142593049 + AT_rich Low_complexity Low_complexity 1 25 0 1542 185 36 26 chr12 1193805 1193929 -142592526 + AluJo SINE Alu 1 122 -190 2179 109 0 0 chr12 1193929 1194213 -142592242 + AluSg SINE Alu 1 284 -26 1542 185 36 26 chr12 1194213 1194396 -142592059 + AluJo SINE Alu 122 311 -1 21 36 0 0 chr12 1194792 1194820 -142591635 + AT_rich Low_complexity Low_complexity 1 28 0 2366 80 0 7 chr12 1194974 1195275 -142591180 - AluSg SINE Alu -2 308 10 742 186 16 0 chr12 1195275 1195404 -142591051 - AluJo/FLAM SINE Alu -170 132 2 25 65 0 0 chr12 1195881 1195927 -142590528 + AT_rich Low_complexity Low_complexity 1 46 0 1690 151 11 35 chr12 1196192 1196477 -142589978 + AluJo SINE Alu 22 299 -13 2125 99 57 0 chr12 1197339 1197621 -142588834 - AluSp SINE Alu -15 298 1 2060 118 11 3 chr12 1198025 1198312 -142588143 + AluSx SINE Alu 1 289 -23 270 0 0 0 chr12 1198854 1198884 -142587571 + (CA)n Simple_repeat Simple_repeat 1 30 0 220 291 0 18 chr12 1199259 1199314 -142587141 - L2 LINE L2 0 3272 3219 2815 16 0 0 chr12 1199331 1199642 -142586813 + AluYa5 SINE Alu 1 311 0 260 352 19 0 chr12 1199723 1199831 -142586624 - L2 LINE L2 -514 2800 2691 590 219 21 139 chr12 1200165 1200402 -142586053 - L2 LINE L2 -1 3312 3104 12794 123 36 70 chr12 1201265 1202393 -142584062 + Tigger1 DNA MER2_type 1 1166 -1252 902 229 0 0 chr12 1202393 1202559 -142583896 + FRAM SINE Alu 1 166 0 12794 123 36 70 chr12 1202559 1203303 -142583152 + Tigger1 DNA MER2_type 1166 1769 -649 2295 94 0 3 chr12 1203303 1203602 -142582853 + AluSq SINE Alu 1 298 -15 12794 123 36 70 chr12 1203602 1204231 -142582224 + Tigger1 DNA MER2_type 1769 2418 0 232 293 13 0 chr12 1205817 1205892 -142580563 - MIR SINE MIR -34 228 153 210 244 44 0 chr12 1205889 1205934 -142580521 - MIR SINE MIR -211 51 5 * 24 53 0 0 chr12 1206349 1206387 -142580068 + AT_rich Low_complexity Low_complexity 1 38 0 1688 211 7 0 chr12 1206652 1206950 -142579505 - AluJo SINE Alu -12 300 1 213 39 0 0 chr12 1207758 1207784 -142578671 + (A)n Simple_repeat Simple_repeat 1 26 0 221 325 112 0 chr12 1208067 1208162 -142578293 + MIR SINE MIR 75 190 -18 221 232 125 0 chr12 1208634 1208690 -142577765 - MER91C DNA MER1_type -44 96 34 247 333 41 20 chr12 1208823 1209018 -142577437 + L1ME4a LINE L1 5725 5923 -198 894 269 100 3 chr12 1209536 1209845 -142576610 - LTR16A LTR ERVL -6 444 106 2315 101 3 7 chr12 1210352 1210658 -142575797 + AluSq SINE Alu 1 305 -8 1602 195 7 13 chr12 1210715 1211013 -142575442 + AluJb SINE Alu 1 296 -16 2101 109 3 3 chr12 1211128 1211432 -142575023 + AluSc SINE Alu 5 308 -1 1171 169 12 4 chr12 1212408 1212657 -142573798 + L1M4 LINE L1 3811 4061 -2085 1967 139 50 36 chr12 1212658 1213017 -142573438 - THE1B LTR MaLR 0 364 1 661 125 133 0 chr12 1213017 1213145 -142573310 - THE1B-int LTR MaLR 0 1580 1436 * 870 201 115 0 chr12 1213127 1213336 -142573119 + L1MB7 LINE L1 5933 6165 -19 2311 46 0 87 chr12 1213506 1213829 -142572626 + AluY SINE Alu 2 296 -15 312 140 0 0 chr12 1214363 1214413 -142572042 + MLT1G LTR MaLR 13 62 -533 2267 64 7 0 chr12 1214498 1214906 -142571549 + AluY SINE Alu 1 410 0 327 256 97 67 chr12 1214907 1215102 -142571353 + MLT1G LTR MaLR 87 287 -303 2087 149 3 0 chr12 1215123 1215431 -142571024 + AluSx SINE Alu 1 309 -3 463 233 60 0 chr12 1215546 1215662 -142570793 + MLT1G LTR MaLR 457 579 -11 22 0 0 0 chr12 1216409 1216431 -142570024 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr12 1217223 1217258 -142569197 + AT_rich Low_complexity Low_complexity 1 35 0 859 149 0 8 chr12 1218242 1218376 -142568079 + FLAM_C SINE Alu 1 133 0 1652 130 103 4 chr12 1218419 1218681 -142567774 - AluSx SINE Alu -20 292 5 246 358 129 0 chr12 1218820 1219021 -142567434 + L3 LINE CR1 554 780 -797 217 283 0 0 chr12 1219250 1219310 -142567145 - MIR SINE MIR -111 151 92 189 295 16 16 chr12 1219361 1219422 -142567033 + L3 LINE CR1 826 886 -691 217 263 70 0 chr12 1219528 1219585 -142566870 + L3 LINE CR1 1250 1310 -267 2071 161 3 3 chr12 1219615 1219937 -142566518 + MER1B DNA MER1_type 1 322 -17 383 295 114 32 chr12 1220249 1220385 -142566070 + HAL1b LINE L1 522 645 -703 2194 81 3 69 chr12 1220385 1220717 -142565738 + AluSp SINE Alu 1 310 -3 383 295 114 32 chr12 1220717 1220861 -142565594 + HAL1b LINE L1 645 825 -523 22 35 0 0 chr12 1220921 1220950 -142565505 + AT_rich Low_complexity Low_complexity 1 29 0 261 297 226 13 chr12 1221151 1221306 -142565149 - L3 LINE CR1 -139 1438 1251 * 562 250 55 0 chr12 1221304 1221432 -142565023 + L2 LINE L2 1902 2036 -1278 230 311 0 0 chr12 1221607 1221681 -142564774 + L1P LINE L1 4887 4960 -1186 1195 191 4 27 chr12 1221786 1222042 -142564413 + AluJb SINE Alu 54 303 -9 330 307 77 29 chr12 1222133 1222466 -142563989 + L1M4 LINE L1 5174 5518 -660 1990 127 7 7 chr12 1222601 1222910 -142563545 + AluSg SINE Alu 1 309 0 26 30 0 0 chr12 1223033 1223066 -142563389 + AT_rich Low_complexity Low_complexity 1 33 0 34 0 0 0 chr12 1223241 1223275 -142563180 + AT_rich Low_complexity Low_complexity 1 34 0 2322 65 17 3 chr12 1223367 1223661 -142562794 + AluY SINE Alu 1 298 -13 2692 138 77 30 chr12 1223666 1223799 -142562656 - L1P5 LINE L1 -377 5777 5652 1840 142 36 26 chr12 1223799 1224102 -142562353 - AluSx SINE Alu -6 306 1 2692 138 77 30 chr12 1224102 1224752 -142561703 - L1P5 LINE L1 -502 5652 4962 252 0 0 0 chr12 1224755 1224783 -142561672 + (TG)n Simple_repeat Simple_repeat 2 29 0 230 326 0 0 chr12 1224798 1224884 -142561571 - L1MC4 LINE L1 -1342 6700 6615 360 0 0 0 chr12 1224884 1224924 -142561531 + (CATATA)n Simple_repeat Simple_repeat 1 40 0 1719 130 18 11 chr12 1224925 1225201 -142561254 + L1PB3 LINE L1 5783 6060 -94 2277 102 0 3 chr12 1226917 1227221 -142559234 - AluSq SINE Alu -10 303 1 2207 218 29 21 chr12 1228016 1228539 -142557916 - L1MC3 LINE L1 -1 7784 7258 22 0 0 0 chr12 1228630 1228652 -142557803 + AT_rich Low_complexity Low_complexity 1 22 0 1902 150 3 3 chr12 1229444 1229730 -142556725 + AluJb SINE Alu 6 291 -21 27 0 0 0 chr12 1229969 1229996 -142556459 + AT_rich Low_complexity Low_complexity 1 27 0 2151 111 0 0 chr12 1230236 1230524 -142555931 + AluSx SINE Alu 1 288 -24 24 0 0 0 chr12 1230524 1230548 -142555907 + AT_rich Low_complexity Low_complexity 1 24 0 914 136 11 87 chr12 1230762 1230946 -142555509 + THE1B LTR MaLR 195 364 0 6546 152 33 28 chr12 1231736 1231979 -142554476 + L1PB1 LINE L1 3863 4103 -2048 4348 43 2 6 chr12 1231979 1232517 -142553938 + L1PA4 LINE L1 5620 6155 0 6546 152 33 28 chr12 1232517 1233821 -142552634 + L1PB1 LINE L1 4103 5398 -753 2351 85 0 0 chr12 1233821 1234114 -142552341 + AluSx SINE Alu 1 293 -19 6546 152 33 28 chr12 1234114 1234473 -142551982 + L1PB1 LINE L1 5398 5753 -398 345 100 0 0 chr12 1234473 1234523 -142551932 + (TA)n Simple_repeat Simple_repeat 1 50 0 6546 152 33 28 chr12 1234523 1234879 -142551576 + L1PB1 LINE L1 5753 6150 -1 676 315 116 35 chr12 1235062 1235691 -142550764 + L1MC/D LINE L1 4151 4830 -1316 468 0 0 0 chr12 1235756 1235808 -142550647 + (CA)n Simple_repeat Simple_repeat 2 53 0 399 159 0 0 chr12 1235842 1235905 -142550550 + FLAM_A SINE Alu 37 99 -34 25 0 0 0 chr12 1235906 1235931 -142550524 + AT_rich Low_complexity Low_complexity 1 25 0 1848 139 0 17 chr12 1235939 1236227 -142550228 + AluSx SINE Alu 6 288 -24 1185 259 93 19 chr12 1236309 1236792 -142549663 + L1MC/D LINE L1 5276 5794 -2014 299 130 0 0 chr12 1237654 1237700 -142548755 - tRNA-Gln-CAG tRNA tRNA -29 46 1 472 197 228 0 chr12 1237710 1237837 -142548618 - MER5A DNA MER1_type -3 186 31 946 175 22 11 chr12 1238249 1238432 -142548023 - MER33 DNA MER1_type -138 186 2 1185 140 77 31 chr12 1238576 1238798 -142547657 + MER46A DNA MER2_type 1 232 -4 3055 171 11 11 chr12 1239524 1240074 -142546381 - MER44D DNA MER2_type 0 605 1 284 294 83 9 chr12 1240173 1240282 -142546173 - MIR SINE MIR -134 128 12 344 107 87 17 chr12 1240719 1241010 -142545445 + (TA)n Simple_repeat Simple_repeat 1 311 0 248 154 31 15 chr12 1241020 1241085 -142545370 + (TATAA)n Simple_repeat Simple_repeat 4 69 0 349 109 77 13 chr12 1241096 1241252 -142545203 + (TA)n Simple_repeat Simple_repeat 1 166 0 2331 67 7 10 chr12 1241273 1241570 -142544885 - AluSx SINE Alu -16 296 1 292 306 9 54 chr12 1241627 1241738 -142544717 - MIR SINE MIR -93 169 64 2371 97 0 0 chr12 1241741 1242050 -142544405 + AluSc SINE Alu 1 309 0 226 393 98 6 chr12 1242424 1242587 -142543868 - L2 LINE L2 -457 2857 2680 * 233 350 75 12 chr12 1242577 1242657 -142543798 - L2 LINE L2 -47 3225 3141 338 176 28 65 chr12 1243207 1243238 -142543217 + L1MEd LINE L1 105 136 -6069 1258 203 128 40 chr12 1243238 1243667 -142542788 - MLT1C LTR MaLR 0 467 1 338 176 28 65 chr12 1243667 1243743 -142542712 + L1MEd LINE L1 136 208 -5997 698 185 122 70 chr12 1244054 1244110 -142542345 - Charlie1 DNA MER1_type -6 2755 2703 2278 100 3 0 chr12 1244110 1244409 -142542046 + AluSp SINE Alu 1 300 -13 698 185 122 70 chr12 1244409 1244486 -142541969 - Charlie1 DNA MER1_type -58 2703 2631 1897 141 10 36 chr12 1244486 1244792 -142541663 + AluJo SINE Alu 1 298 -14 698 185 122 70 chr12 1244792 1244927 -142541528 - Charlie1 DNA MER1_type -130 2631 2472 336 281 21 0 chr12 1244948 1245044 -142541411 + L1MEd LINE L1 618 715 -5681 * 2147 229 105 52 chr12 1245029 1246054 -142540401 - L1M4b LINE L1 -3060 3584 2528 2224 112 0 3 chr12 1246054 1246367 -142540088 - AluSx SINE Alu 0 312 1 2147 229 105 52 chr12 1246367 1246479 -142539976 - L1M4b LINE L1 -4116 2528 2423 785 260 0 0 chr12 1246511 1246684 -142539771 - FRAM SINE Alu -6 170 1 1488 280 58 42 chr12 1246697 1246897 -142539558 - L1M4b LINE L1 -4392 2433 2238 1583 177 10 45 chr12 1246897 1247207 -142539248 - AluJb SINE Alu -13 299 1 1488 280 58 42 chr12 1247207 1247927 -142538528 - L1M4b LINE L1 -4587 2238 1459 2213 84 47 0 chr12 1247927 1248225 -142538230 + AluSp SINE Alu 1 312 -1 1488 280 58 42 chr12 1248225 1248284 -142538171 - L1M4b LINE L1 -5366 1459 1402 1065 210 0 15 chr12 1248293 1248488 -142537967 - AluJb SINE Alu -24 288 97 339 268 95 14 chr12 1248505 1248715 -142537740 - L1M4b LINE L1 -5246 1296 1063 294 239 54 43 chr12 1249517 1249609 -142536846 - MIR SINE MIR -70 192 100 2385 60 0 57 chr12 1250981 1251147 -142535308 - AluSq SINE Alu -14 299 125 234 0 0 0 chr12 1251147 1251173 -142535282 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2304 71 4 0 chr12 1251173 1251454 -142535001 - AluY SINE Alu -29 282 1 2385 60 0 57 chr12 1251454 1251466 -142534989 - AluSq SINE Alu -187 126 115 2366 88 3 0 chr12 1251466 1251762 -142534693 - AluSg SINE Alu -13 297 1 2385 60 0 57 chr12 1251762 1251898 -142534557 - AluSq SINE Alu -198 115 1 21 36 0 0 chr12 1252200 1252228 -142534227 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr12 1252409 1252439 -142534016 + AT_rich Low_complexity Low_complexity 1 30 0 227 230 115 35 chr12 1254170 1254257 -142532198 + L1MC5 LINE L1 7833 7926 -35 223 161 21 32 chr12 1255363 1255456 -142530999 + (TA)n Simple_repeat Simple_repeat 1 92 0 423 0 0 0 chr12 1255495 1255542 -142530913 + (TG)n Simple_repeat Simple_repeat 2 48 0 991 99 0 0 chr12 1256212 1256343 -142530112 + AluSq/x SINE Alu 1 131 -181 517 128 0 0 chr12 1256591 1256677 -142529778 - L1M4 LINE L1 -1447 4699 4614 1572 214 53 69 chr12 1256745 1257269 -142529186 - MLT2B1 LTR ERVL -4 516 1 761 241 118 14 chr12 1257323 1257671 -142528784 - L1M4 LINE L1 -1103 5043 4660 758 298 84 69 chr12 1257975 1258310 -142528145 - L1M4 LINE L1 -1947 4199 3870 2086 119 0 0 chr12 1258310 1258587 -142527868 - AluSx SINE Alu -7 305 29 758 298 84 69 chr12 1258587 1259261 -142527194 - L1M4 LINE L1 -2276 3870 3175 6083 114 22 39 chr12 1259532 1259697 -142526758 + L1MA4 LINE L1 5274 5440 -860 1227 178 170 0 chr12 1259697 1259938 -142526517 + AluJo SINE Alu 1 282 -30 6083 114 22 39 chr12 1259938 1260317 -142526138 + L1MA4 LINE L1 5440 5824 -476 396 0 0 0 chr12 1260317 1260361 -142526094 + (CA)n Simple_repeat Simple_repeat 2 45 0 6083 114 22 39 chr12 1260361 1260853 -142525602 + L1MA4 LINE L1 5824 6295 -5 741 260 61 22 chr12 1262180 1262433 -142524022 - MIR SINE MIR 0 262 2 259 243 14 27 chr12 1263854 1263928 -142522527 + (TG)n Simple_repeat Simple_repeat 1 73 0 264 359 61 8 chr12 1264028 1264155 -142522300 - MIR SINE MIR -73 135 27 2297 92 0 22 chr12 1264633 1264947 -142521508 + AluSg SINE Alu 1 307 -3 21 0 0 0 chr12 1264947 1264968 -142521487 + AT_rich Low_complexity Low_complexity 1 21 0 556 293 39 85 chr12 1267855 1268088 -142518367 - L2 LINE L2 0 3313 3098 2372 76 3 10 chr12 1268088 1268402 -142518053 + AluSx SINE Alu 1 312 0 556 293 39 85 chr12 1268402 1268499 -142517956 - L2 LINE L2 -215 3098 2998 1084 112 25 6 chr12 1268762 1268923 -142517532 + MSTB1 LTR MaLR 269 432 0 473 318 115 75 chr12 1268924 1269178 -142517277 + L2 LINE L2 2422 2703 -611 1842 111 0 0 chr12 1269178 1269421 -142517034 - AluSx SINE Alu -69 243 1 473 318 115 75 chr12 1269421 1269609 -142516846 + L2 LINE L2 2703 2882 -432 433 342 98 52 chr12 1269628 1269836 -142516619 + L2 LINE L2 2845 3042 -271 1996 155 0 0 chr12 1269836 1270162 -142516293 + AluSg SINE Alu 1 310 0 433 342 98 52 chr12 1270162 1270400 -142516055 + L2 LINE L2 3042 3312 -1 231 114 0 0 chr12 1270872 1270907 -142515548 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 880 220 40 0 chr12 1270921 1271121 -142515334 - MER3 DNA MER1_type -1 208 1 291 319 39 28 chr12 1271229 1271411 -142515044 - L1MC4a LINE L1 -1081 6727 6544 2204 128 0 0 chr12 1271654 1271959 -142514496 - AluSg SINE Alu -5 305 1 458 293 144 13 chr12 1272369 1272598 -142513857 - MIR SINE MIR 0 262 4 335 339 35 29 chr12 1272757 1272928 -142513527 - L2 LINE L2 -906 2408 2237 695 204 98 0 chr12 1272928 1273060 -142513395 + FAM SINE Alu 14 158 -27 454 345 43 5 chr12 1273134 1273343 -142513112 + L2 LINE L2 2359 2575 -739 2337 194 74 60 chr12 1273516 1274121 -142512334 - Charlie2 DNA MER1_type -73 2789 2167 2014 118 7 7 chr12 1274121 1274410 -142512045 + AluSx SINE Alu 3 291 -21 2337 194 74 60 chr12 1274410 1274658 -142511797 - Charlie2 DNA MER1_type -695 2167 1924 603 284 186 18 chr12 1274679 1274954 -142511501 - Charlie2 DNA MER1_type -2536 326 6 567 297 117 51 chr12 1274959 1275558 -142510897 + L2 LINE L2 2605 3313 0 1314 103 0 0 chr12 1275841 1276016 -142510439 - AluY SINE Alu -10 301 127 329 331 24 116 chr12 1276030 1276281 -142510174 + L2 LINE L2 3029 3256 -16 1655 181 0 14 chr12 1276859 1277151 -142509304 - AluJo SINE Alu -24 288 1 2499 87 0 0 chr12 1277922 1278234 -142508221 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 1278246 1278267 -142508188 + AT_rich Low_complexity Low_complexity 1 21 0 3514 178 64 13 chr12 1278463 1279210 -142507245 + L1MC2 LINE L1 5549 6333 -11 2634 24 0 7 chr12 1279948 1280246 -142506209 - AluY SINE Alu -15 296 1 2332 102 0 6 chr12 1280637 1280951 -142505504 + AluSq SINE Alu 1 312 -1 300 27 0 0 chr12 1282932 1282969 -142503486 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 1382 238 173 65 chr12 1284238 1284804 -142501651 + HAL1 LINE L1 1402 1905 -602 2418 81 3 7 chr12 1284804 1285114 -142501341 + AluSg SINE Alu 1 309 -1 1382 238 173 65 chr12 1285114 1285545 -142500910 + HAL1 LINE L1 1905 2507 0 1425 167 75 3 chr12 1286578 1286872 -142499583 + MER33 DNA MER1_type 2 316 -8 1656 249 111 16 chr12 1287189 1287684 -142498771 - MLT1F LTR MaLR 0 542 1 695 107 52 68 chr12 1288379 1288417 -142498038 + L1MA9 LINE L1 6104 6141 -171 6606 74 9 3 chr12 1288417 1288703 -142497752 + L1PA7 LINE L1 5187 5470 -684 2466 50 0 23 chr12 1288703 1289005 -142497450 + AluY SINE Alu 16 310 -1 6606 74 9 3 chr12 1289005 1289681 -142496774 + L1PA7 LINE L1 5470 6154 0 695 107 52 68 chr12 1289681 1289834 -142496621 + L1MA9 LINE L1 6141 6299 -13 1873 138 3 3 chr12 1289834 1290123 -142496332 + AluSx SINE Alu 21 309 -3 695 107 52 68 chr12 1290123 1290137 -142496318 + L1MA9 LINE L1 6299 6312 0 292 51 0 0 chr12 1290154 1290193 -142496262 - MADE1 DNA Mariner 0 80 42 2257 102 3 0 chr12 1290937 1291232 -142495223 - AluSp SINE Alu -17 296 1 1075 216 0 0 chr12 1292401 1292619 -142493836 + L1MA4 LINE L1 6069 6286 -14 26 30 0 0 chr12 1292620 1292653 -142493802 + AT_rich Low_complexity Low_complexity 1 33 0 31 26 0 0 chr12 1294046 1294084 -142492371 + AT_rich Low_complexity Low_complexity 1 38 0 2399 133 6 3 chr12 1294589 1294943 -142491512 + MLT1A1 LTR MaLR 9 363 -2 1555 155 11 33 chr12 1295459 1295730 -142490725 + AluJo SINE Alu 24 288 -24 24 0 0 0 chr12 1295730 1295754 -142490701 + AT_rich Low_complexity Low_complexity 1 24 0 246 370 22 11 chr12 1295778 1295870 -142490585 + L2 LINE L2 3144 3236 -36 239 309 120 46 chr12 1295904 1296079 -142490376 + L2 LINE L2 2649 2836 -478 656 275 85 43 chr12 1296125 1296430 -142490025 + L2 LINE L2 2995 3312 -1 2264 103 3 0 chr12 1296611 1296912 -142489543 - AluSp SINE Alu -11 302 1 2412 237 68 58 chr12 1297146 1297380 -142489075 - L1MC4a LINE L1 -1 7807 7577 787 227 152 19 chr12 1297380 1297644 -142488811 - AluJb SINE Alu -2 300 2 2412 237 68 58 chr12 1297644 1298302 -142488153 - L1MC4a LINE L1 -231 7577 6906 552 263 66 14 chr12 1298310 1298523 -142487932 - L1MC4a LINE L1 -1988 5820 5597 300 147 21 126 chr12 1298527 1298556 -142487899 + Charlie1 DNA MER1_type 2670 2700 -61 838 124 0 29 chr12 1298556 1298693 -142487762 + FLAM_C SINE Alu 1 133 0 300 147 21 126 chr12 1298693 1298758 -142487697 + Charlie1 DNA MER1_type 2700 2754 -7 345 226 65 19 chr12 1299158 1299313 -142487142 + L1ME3A LINE L1 5804 5965 -205 1698 149 29 18 chr12 1299808 1300129 -142486326 + AluSx SINE Alu 1 324 0 691 221 91 5 chr12 1300803 1301002 -142485453 - MER20 DNA MER1_type -3 216 1 1254 203 86 52 chr12 1301262 1301403 -142485052 + MER2 DNA MER2_type 9 144 -201 2891 16 0 0 chr12 1301403 1301721 -142484734 - AluYb8 SINE Alu 0 318 1 1254 203 86 52 chr12 1301721 1301905 -142484550 + MER2 DNA MER2_type 144 345 0 203 160 100 0 chr12 1301959 1302009 -142484446 - MIR SINE MIR -50 212 158 1955 97 48 14 chr12 1302493 1302782 -142483673 + AluSx SINE Alu 14 312 0 23 0 0 0 chr12 1303884 1303907 -142482548 + AT_rich Low_complexity Low_complexity 1 23 0 289 196 161 42 chr12 1304247 1304390 -142482065 - L1MC5 LINE L1 -44 7917 7758 479 217 21 146 chr12 1304453 1304626 -142481829 - L1MC4 LINE L1 -1015 7012 6810 758 242 21 11 chr12 1304626 1304812 -142481643 + MER5A DNA MER1_type 1 188 -1 479 217 21 146 chr12 1304812 1304878 -142481577 - L1MC4 LINE L1 -1217 6810 6737 1257 217 37 10 chr12 1304881 1305181 -142481274 - AluJo SINE Alu -4 308 1 1028 171 239 13 chr12 1305271 1305531 -142480924 + AluJo SINE Alu 1 302 0 278 267 0 17 chr12 1305550 1305610 -142480845 - MIR SINE MIR -129 79 21 189 306 61 61 chr12 1305685 1305832 -142480623 + MIR SINE MIR 66 212 -50 357 345 36 12 chr12 1306899 1307064 -142479391 + MIR SINE MIR 20 188 -74 316 281 12 0 chr12 1307278 1307360 -142479095 + GA-rich Low_complexity Low_complexity 3 85 0 687 303 90 23 chr12 1308677 1309253 -142477202 - L1ME LINE L1 -375 5787 5150 1618 188 35 0 chr12 1309253 1309540 -142476915 - AluJb SINE Alu -15 297 1 687 303 90 23 chr12 1309540 1309648 -142476807 - L1ME LINE L1 -1012 5150 5051 395 320 46 5 chr12 1309863 1310057 -142476398 - L1ME LINE L1 -1335 4811 4610 1041 186 32 6 chr12 1310179 1310464 -142475991 - MER47B DNA MER2_type 0 418 29 557 257 72 64 chr12 1310580 1311078 -142475377 - L1MC5 LINE L1 -195 7766 7265 2258 119 0 0 chr12 1311133 1311436 -142475019 - AluSx SINE Alu -7 305 3 4078 232 80 74 chr12 1311764 1312589 -142473866 + L1MA9 LINE L1 2109 2928 -4637 2205 93 3 3 chr12 1312589 1312879 -142473576 + AluY SINE Alu 2 291 -20 4078 232 80 74 chr12 1312879 1314328 -142472127 + L1MA9 LINE L1 2928 4392 -3173 2222 102 27 0 chr12 1314328 1314622 -142471833 + AluSx SINE Alu 1 302 -10 4078 232 80 74 chr12 1314622 1315096 -142471359 + L1MA9 LINE L1 4392 4862 -2703 1293 194 38 19 chr12 1315121 1315384 -142471071 - AluJo SINE Alu -21 291 24 4046 182 44 9 chr12 1315418 1316275 -142470180 + L1MA9 LINE L1 4873 5759 -1806 4954 139 58 45 chr12 1316282 1317650 -142468805 + L1MA9 LINE L1 5858 7326 -405 2032 142 7 0 chr12 1317650 1317945 -142468510 + AluSx SINE Alu 1 297 -15 4954 139 58 45 chr12 1317945 1318357 -142468098 + L1MA9 LINE L1 7326 7731 0 396 0 0 0 chr12 1319133 1319177 -142467278 + (TG)n Simple_repeat Simple_repeat 2 45 0 1601 178 44 0 chr12 1319179 1319449 -142467006 - AluJo SINE Alu -30 282 1 1790 164 39 32 chr12 1319618 1319928 -142466527 - AluJo SINE Alu 0 312 1 21 36 0 0 chr12 1319984 1320012 -142466443 + AT_rich Low_complexity Low_complexity 1 28 0 220 200 0 0 chr12 1320339 1320379 -142466076 + (TG)n Simple_repeat Simple_repeat 1 40 0 360 331 173 0 chr12 1321084 1321223 -142465232 + MER5A DNA MER1_type 12 174 -15 274 273 0 0 chr12 1321521 1321587 -142464868 + L2 LINE L2 3245 3310 -3 1973 119 51 10 chr12 1322112 1322407 -142464048 + AluSx SINE Alu 1 307 -5 1297 187 78 33 chr12 1322423 1322754 -142463701 + MER7A DNA MER2_type 2 345 -1 894 286 95 14 chr12 1323397 1323754 -142462701 - L2 LINE L2 -3 3310 2925 593 247 181 0 chr12 1323823 1324005 -142462450 - MER58C DNA MER1_type 0 215 1 498 304 217 34 chr12 1324229 1324730 -142461725 - L2 LINE L2 -3 3310 2720 1288 148 10 5 chr12 1324789 1324991 -142461464 + AluJb SINE Alu 100 302 -10 2493 318 100 35 chr12 1324997 1325454 -142461001 - L2 LINE L2 -620 2694 2268 2339 105 0 0 chr12 1325454 1325749 -142460706 + AluSx SINE Alu 1 295 -17 2493 318 100 35 chr12 1325749 1327009 -142459446 - L2 LINE L2 -1046 2268 866 475 355 56 21 chr12 1329660 1329894 -142456561 + MIR SINE MIR 6 247 -15 348 24 0 0 chr12 1329924 1329965 -142456490 + (TG)n Simple_repeat Simple_repeat 2 42 0 26 64 0 0 chr12 1329977 1330024 -142456431 + AT_rich Low_complexity Low_complexity 1 47 0 216 319 113 34 chr12 1330179 1330417 -142456038 - MIR SINE MIR -1 261 5 1144 139 6 0 chr12 1330696 1330869 -142455586 - AluSg/x SINE Alu -2 310 137 2070 136 0 3 chr12 1330871 1331172 -142455283 - AluSx SINE Alu -12 300 1 2153 128 21 3 chr12 1331751 1332088 -142454367 + MER61A LTR ERV1 1 343 0 2076 126 0 32 chr12 1332757 1333066 -142453389 + AluSq SINE Alu 1 299 -14 2232 77 7 3 chr12 1333179 1333465 -142452990 + AluSp SINE Alu 1 287 -26 2123 105 31 3 chr12 1333627 1333913 -142452542 - AluSc SINE Alu -15 294 1 391 260 182 13 chr12 1334855 1335009 -142451446 + MER5A DNA MER1_type 10 189 0 2282 105 0 0 chr12 1335374 1335669 -142450786 + AluSx SINE Alu 17 311 -1 1162 93 6 47 chr12 1335671 1335843 -142450612 + AluSq SINE Alu 136 300 -13 1287 129 53 31 chr12 1336161 1336386 -142450069 + MER30 DNA MER1_type 1 230 0 466 321 49 16 chr12 1336417 1336601 -142449854 + MIR SINE MIR 34 223 -39 414 105 92 0 chr12 1336695 1336771 -142449684 - MER53 DNA DNA -106 83 1 801 100 77 8 chr12 1337616 1337746 -142448709 - MER85 DNA T2_type 0 139 1 221 287 35 0 chr12 1338224 1338307 -142448148 - MIR SINE MIR -98 164 79 351 203 0 0 chr12 1339188 1339267 -142447188 + (TA)n Simple_repeat Simple_repeat 1 79 0 352 278 91 32 chr12 1339422 1339609 -142446846 + MIR SINE MIR 65 262 0 2254 91 0 0 chr12 1341269 1341556 -142444899 + AluSx SINE Alu 1 287 -25 23 0 0 0 chr12 1341880 1341903 -142444552 + AT_rich Low_complexity Low_complexity 1 23 0 1908 169 7 0 chr12 1341955 1342251 -142444204 - AluJb SINE Alu -14 298 1 399 175 29 29 chr12 1343327 1343430 -142443025 - MER104 DNA Tc2 -47 133 31 236 243 14 14 chr12 1343597 1343671 -142442784 + (TA)n Simple_repeat Simple_repeat 2 75 0 2498 56 0 0 chr12 1343769 1344073 -142442382 + AluY SINE Alu 1 304 -7 2279 97 0 26 chr12 1344827 1345138 -142441317 - AluSq SINE Alu -10 303 1 726 87 0 0 chr12 1345293 1345396 -142441059 + MSTA LTR MaLR 1 103 -325 615 71 0 0 chr12 1345398 1345483 -142440972 + MSTA LTR MaLR 19 103 -325 618 71 0 0 chr12 1345485 1345570 -142440885 + MSTA LTR MaLR 19 103 -325 594 94 0 0 chr12 1345572 1345657 -142440798 + MSTA LTR MaLR 19 103 -325 2213 113 87 8 chr12 1345659 1346039 -142440416 + MSTA LTR MaLR 19 428 0 1760 168 14 7 chr12 1346399 1346690 -142439765 + AluJb SINE Alu 1 293 -19 219 36 0 0 chr12 1346696 1346724 -142439731 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 188 301 68 27 chr12 1347249 1347322 -142439133 + MIR SINE MIR 36 111 -151 2190 138 0 0 chr12 1347346 1347650 -142438805 + AluSx SINE Alu 1 304 -8 513 0 0 0 chr12 1347664 1347721 -142438734 + (TG)n Simple_repeat Simple_repeat 2 58 0 594 91 0 0 chr12 1347721 1347820 -142438635 + (GA)n Simple_repeat Simple_repeat 2 100 0 1748 169 24 3 chr12 1347839 1348129 -142438326 + AluJb SINE Alu 3 298 -14 436 285 76 37 chr12 1348769 1349208 -142437247 - MLT1L LTR MaLR 0 615 116 786 175 27 33 chr12 1349331 1349514 -142436941 + L1ME1 LINE L1 5976 6157 -9 214 277 0 62 chr12 1349561 1349626 -142436829 + L2 LINE L2 3003 3063 -250 203 61 30 0 chr12 1350165 1350198 -142436257 + (TTTTA)n Simple_repeat Simple_repeat 4 37 0 2304 90 0 3 chr12 1350200 1350489 -142435966 - AluSx SINE Alu -24 288 1 683 261 19 97 chr12 1350688 1351060 -142435395 + MLT2C1 LTR ERVL 4 346 -51 23 0 0 0 chr12 1351073 1351096 -142435359 + AT_rich Low_complexity Low_complexity 1 23 0 282 233 0 0 chr12 1351111 1351197 -142435258 + (TATG)n Simple_repeat Simple_repeat 2 87 0 326 289 107 0 chr12 1352521 1352642 -142433813 + MIR3 SINE MIR 10 143 -65 1380 239 75 19 chr12 1354365 1354738 -142431717 + MSTD LTR MaLR 2 395 -1 194 229 42 0 chr12 1355484 1355532 -142430923 + MER5A DNA MER1_type 52 101 -88 759 205 86 0 chr12 1355872 1356023 -142430432 - FAM SINE Alu -11 174 11 306 0 0 0 chr12 1357855 1357889 -142428566 + (CA)n Simple_repeat Simple_repeat 2 35 0 1847 155 24 3 chr12 1357889 1358179 -142428276 - AluJb SINE Alu -16 296 1 250 226 129 77 chr12 1358569 1358683 -142427772 + MER103 DNA DNA 3 129 -37 1071 155 89 118 chr12 1358683 1359031 -142427424 + MER58B DNA MER1_type 1 338 -3 250 226 129 77 chr12 1359031 1359071 -142427384 + MER103 DNA DNA 129 165 -1 1564 141 36 0 chr12 1359183 1359431 -142427024 + AluSx SINE Alu 23 279 -33 210 265 10 78 chr12 1359503 1359567 -142426888 - MIR SINE MIR -4 258 202 2063 133 3 0 chr12 1359567 1359861 -142426594 - AluSq SINE Alu -18 295 1 210 265 10 78 chr12 1359861 1359898 -142426557 - MIR SINE MIR -60 202 164 539 326 150 11 chr12 1359904 1360370 -142426085 - L2 LINE L2 -1005 2309 1779 337 270 80 135 chr12 1360388 1360751 -142425704 - L3 LINE CR1 -3 1574 1232 2633 58 0 0 chr12 1360773 1361084 -142425371 + AluY SINE Alu 1 311 0 193 200 0 25 chr12 1361804 1361844 -142424611 - L2 LINE L2 -9 3263 3225 554 221 0 7 chr12 1362197 1362342 -142424113 + L1MC/D LINE L1 5184 5327 -819 443 113 0 0 chr12 1362348 1362419 -142424036 + L1MA5A LINE L1 6222 6292 -5 1812 148 38 1 chr12 1362436 1362800 -142423655 + L1MC/D LINE L1 5290 5667 -501 2809 137 11 9 chr12 1362954 1363408 -142423047 + MSTB2 LTR MaLR 3 457 0 2209 87 13 13 chr12 1364422 1364721 -142421734 - AluSg SINE Alu -11 299 1 2144 96 3 23 chr12 1365396 1365698 -142420757 - AluSq SINE Alu -17 296 1 2154 112 3 0 chr12 1366107 1366401 -142420054 - AluSx SINE Alu -17 295 1 992 121 23 0 chr12 1366587 1366761 -142419694 + L1MA8 LINE L1 6112 6289 -2 228 91 0 0 chr12 1366813 1366846 -142419609 - U2 snRNA snRNA -155 33 1 2751 10 0 0 chr12 1367141 1367442 -142419013 - AluYb8 SINE Alu -17 301 1 198 0 0 0 chr12 1367921 1367943 -142418512 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 344 299 123 21 chr12 1368149 1368433 -142418022 + HAL1b LINE L1 494 806 -542 261 222 209 0 chr12 1368557 1368620 -142417835 + HAL1b LINE L1 961 1010 -338 2446 63 0 10 chr12 1368620 1368922 -142417533 + AluY SINE Alu 1 299 -12 261 222 209 0 chr12 1368922 1369011 -142417444 + HAL1b LINE L1 1010 1145 -203 288 309 0 8 chr12 1369014 1369140 -142417315 + HAL1b LINE L1 1193 1317 -31 430 319 33 42 chr12 1369206 1369419 -142417036 + MIR SINE MIR 46 256 -6 2352 72 7 0 chr12 1369962 1370253 -142416202 + AluY SINE Alu 1 293 -18 185 364 18 0 chr12 1371192 1371247 -142415208 + L2 LINE L2 2679 2734 -580 2509 73 0 13 chr12 1371605 1371920 -142414535 - AluSx SINE Alu -1 311 1 25 31 0 0 chr12 1372015 1372047 -142414408 + AT_rich Low_complexity Low_complexity 1 32 0 3903 54 6 8 chr12 1372277 1372776 -142413679 - L1PA6 LINE L1 -2 6152 5655 1839 86 0 16 chr12 1372776 1373021 -142413434 + AluSc SINE Alu 69 309 0 740 173 0 16 chr12 1373203 1373330 -142413125 + FLAM_C SINE Alu 1 125 -18 17664 172 22 82 chr12 1373349 1376987 -142409468 + L1PA13 LINE L1 8 3863 -2951 1957 138 24 0 chr12 1376987 1377116 -142409339 + AluSx SINE Alu 1 125 -187 195 42 0 0 chr12 1377116 1377140 -142409315 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1957 138 24 0 chr12 1377140 1377299 -142409156 + AluSx SINE Alu 125 296 -16 17664 172 22 82 chr12 1377299 1378188 -142408267 + L1PA13 LINE L1 3863 4804 -2010 288 0 0 0 chr12 1378188 1378220 -142408235 + (CCAA)n Simple_repeat Simple_repeat 4 35 0 17664 172 22 82 chr12 1378220 1380472 -142405983 + L1PA13 LINE L1 4804 6331 -483 2466 77 0 0 chr12 1380472 1380772 -142405683 + AluSc SINE Alu 1 300 -9 17664 172 22 82 chr12 1380772 1381225 -142405230 + L1PA13 LINE L1 6331 6810 -4 351 273 106 42 chr12 1381632 1382087 -142404368 + HAL1 LINE L1 823 1306 -1201 1062 275 29 52 chr12 1382617 1383100 -142403355 + L1ME3A LINE L1 5694 6165 -5 360 258 70 51 chr12 1383148 1383404 -142403051 + L1MEd LINE L1 969 1229 -4890 243 295 0 0 chr12 1383457 1383518 -142402937 + GA-rich Low_complexity Low_complexity 3 63 0 198 0 0 0 chr12 1383638 1383660 -142402795 + (TAA)n Simple_repeat Simple_repeat 2 23 0 202 311 137 26 chr12 1384234 1384424 -142402031 + L2 LINE L2 2456 2666 -648 310 273 30 0 chr12 1384519 1384618 -142401837 + MIR SINE MIR 119 220 -42 2321 98 3 3 chr12 1384786 1385091 -142401364 - AluSx SINE Alu -7 305 1 414 314 117 89 chr12 1385464 1385659 -142400796 - L2 LINE L2 -440 2874 2686 1568 201 18 7 chr12 1385659 1385942 -142400513 + AluJb SINE Alu 1 286 -26 200 31 62 0 chr12 1385946 1385978 -142400477 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 414 314 117 89 chr12 1385978 1386596 -142399859 - L2 LINE L2 -630 2684 2033 273 333 17 11 chr12 1391666 1391783 -142394672 + MIR SINE MIR 7 129 -79 329 264 145 0 chr12 1391809 1391968 -142394487 - MIR SINE MIR -6 256 75 297 324 37 22 chr12 1392774 1392910 -142393545 - MIR SINE MIR -23 239 102 2538 65 0 0 chr12 1393102 1393408 -142393047 + AluY SINE Alu 1 306 -5 368 200 98 166 chr12 1393408 1393673 -142392782 + L1MC4a LINE L1 5581 5827 -1981 491 318 49 28 chr12 1393706 1394179 -142392276 + L1MC4a LINE L1 5467 5824 -297 5404 33 5 17 chr12 1396542 1396914 -142389541 - L1PA7 LINE L1 -3 6151 5789 2450 90 0 3 chr12 1396914 1397225 -142389230 - AluSq SINE Alu -3 310 1 5404 33 5 17 chr12 1397225 1397516 -142388939 - L1PA7 LINE L1 -365 5789 5496 31 0 0 0 chr12 1397617 1397648 -142388807 + AT_rich Low_complexity Low_complexity 1 31 0 2119 87 17 3 chr12 1397916 1398205 -142388250 + AluY SINE Alu 1 293 -18 240 100 0 0 chr12 1398351 1398391 -142388064 + (TC)n Simple_repeat Simple_repeat 2 41 0 1854 87 0 0 chr12 1398507 1398761 -142387694 + AluSx SINE Alu 56 309 0 1636 134 13 0 chr12 1398786 1399018 -142387437 + AluSx SINE Alu 1 235 -77 213 39 0 0 chr12 1399036 1399062 -142387393 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr12 1399300 1399321 -142387134 + AT_rich Low_complexity Low_complexity 1 21 0 261 291 137 11 chr12 1399540 1399715 -142386740 - L1ME LINE L1 -468 5653 5457 262 292 0 17 chr12 1399738 1399858 -142386597 - L1ME LINE L1 -2380 5428 5311 261 304 51 0 chr12 1399860 1399939 -142386516 - MIR SINE MIR -109 153 71 31 16 0 66 chr12 1400085 1400115 -142386340 + AT_rich Low_complexity Low_complexity 1 27 -30 2058 113 7 0 chr12 1400115 1400397 -142386058 - AluSx SINE Alu -26 286 3 31 16 0 66 chr12 1400397 1400427 -142386028 + AT_rich Low_complexity Low_complexity 27 57 0 323 282 77 77 chr12 1400669 1401048 -142385407 + MLT1J LTR MaLR 28 406 -105 1844 136 11 0 chr12 1401444 1401709 -142384746 + AluSx SINE Alu 1 268 -44 220 306 42 14 chr12 1402870 1402942 -142383513 - MIR SINE MIR -165 97 24 1665 108 77 19 chr12 1403592 1403852 -142382603 + AluSx SINE Alu 1 275 -37 306 0 0 0 chr12 1403859 1403893 -142382562 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 680 252 33 33 chr12 1403893 1403947 -142382508 - MIR SINE MIR -38 224 171 1539 85 0 0 chr12 1403947 1404180 -142382275 + AluY SINE Alu 92 324 0 680 252 33 33 chr12 1404180 1404334 -142382121 - MIR SINE MIR -90 172 15 22 0 0 0 chr12 1404366 1404388 -142382067 + AT_rich Low_complexity Low_complexity 1 22 0 1484 227 146 25 chr12 1404714 1404918 -142381537 + MER119 DNA MER1_type 1 179 -404 2024 183 5 11 chr12 1404918 1405285 -142381170 - MLT1A1 LTR MaLR 0 365 1 1484 227 146 25 chr12 1405285 1405600 -142380855 + MER119 DNA MER1_type 179 583 0 246 62 0 0 chr12 1405869 1405901 -142380554 + (TAA)n Simple_repeat Simple_repeat 2 33 0 180 97 0 0 chr12 1407348 1407379 -142379076 + (A)n Simple_repeat Simple_repeat 1 31 0 2414 50 30 0 chr12 1409023 1409323 -142377132 + AluY SINE Alu 1 309 -2 2362 83 10 0 chr12 1410129 1410429 -142376026 - AluSp SINE Alu -10 303 1 2336 84 0 10 chr12 1410439 1410748 -142375707 - AluY SINE Alu -5 306 1 2766 134 18 26 chr12 1410748 1411129 -142375326 + Tigger1 DNA MER2_type 1922 2300 -118 1722 156 21 3 chr12 1411129 1411417 -142375038 - AluJo SINE Alu -19 293 1 2766 134 18 26 chr12 1411417 1411535 -142374920 + Tigger1 DNA MER2_type 2300 2417 -1 1734 280 54 7 chr12 1411544 1412265 -142374190 - L1M4 LINE L1 -1917 4229 3475 3165 110 21 14 chr12 1412269 1412752 -142373703 - L1PA13 LINE L1 0 6163 5678 2019 154 11 14 chr12 1412753 1413123 -142373332 - L1PB3 LINE L1 -3 6151 5783 3796 136 23 2 chr12 1413124 1414129 -142372326 - L1PB3 LINE L1 -490 5673 4649 557 255 89 22 chr12 1414128 1414399 -142372056 - L1M4 LINE L1 -2655 3491 3203 * 1127 133 126 69 chr12 1414485 1414593 -142371862 + L1MA8 LINE L1 5954 6054 -237 2285 107 0 3 chr12 1414593 1414901 -142371554 + AluSx SINE Alu 1 307 -5 1127 133 126 69 chr12 1414901 1415109 -142371346 + L1MA8 LINE L1 6054 6288 -3 225 0 0 0 chr12 1415572 1415597 -142370858 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 427 281 124 47 chr12 1416810 1416925 -142369530 - L1ME4a LINE L1 0 6121 6016 2297 81 34 0 chr12 1416925 1417223 -142369232 + AluY SINE Alu 1 308 -3 427 281 124 47 chr12 1417223 1417406 -142369049 - L1ME4a LINE L1 -105 6016 5800 2166 118 0 0 chr12 1417896 1418200 -142368255 + AluSx SINE Alu 1 304 -8 2188 111 3 7 chr12 1418763 1419060 -142367395 + AluSx SINE Alu 1 296 -16 1892 141 11 4 chr12 1419178 1419455 -142367000 + AluSx SINE Alu 1 279 -33 612 0 0 0 chr12 1419455 1419523 -142366932 + (CA)n Simple_repeat Simple_repeat 1 68 0 610 107 0 39 chr12 1419525 1419618 -142366837 + FLAM_A SINE Alu 43 133 -178 2579 48 0 6 chr12 1419618 1419930 -142366525 + AluY SINE Alu 1 310 -1 544 110 90 0 chr12 1419991 1420091 -142366364 + L1MA4 LINE L1 6163 6271 -29 22 0 0 0 chr12 1421146 1421168 -142365287 + AT_rich Low_complexity Low_complexity 1 22 0 1864 159 3 14 chr12 1421168 1421464 -142364991 - AluJb SINE Alu -19 293 1 180 0 0 0 chr12 1422349 1422369 -142364086 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 240 111 0 0 chr12 1423932 1423968 -142362487 + (TG)n Simple_repeat Simple_repeat 2 37 0 683 70 0 50 chr12 1426123 1426223 -142360232 - AluJb SINE Alu -8 304 210 358 289 10 0 chr12 1427342 1427446 -142359009 + MIR SINE MIR 1 105 -157 180 196 0 43 chr12 1427482 1427528 -142358927 + MIR SINE MIR 219 262 0 184 200 308 0 chr12 1427542 1427607 -142358848 + MIR SINE MIR 123 207 -55 569 241 59 3 chr12 1427755 1427963 -142358492 + MER58B DNA MER1_type 14 295 -46 1259 171 96 20 chr12 1427972 1428223 -142358232 + AluJo SINE Alu 28 297 -15 253 331 33 33 chr12 1428837 1428958 -142357497 - MIR3 SINE MIR -13 195 75 2261 104 0 7 chr12 1429444 1429742 -142356713 + AluSx SINE Alu 1 296 -16 1249 222 53 25 chr12 1429748 1430248 -142356207 + MLT1F LTR MaLR 26 542 0 257 284 0 0 chr12 1430348 1430415 -142356040 + L2 LINE L2 2981 3047 -225 237 278 153 0 chr12 1430515 1430587 -142355868 + L2 LINE L2 3186 3268 -4 458 287 25 18 chr12 1432285 1432455 -142354000 - MIR SINE MIR -12 250 81 2223 106 3 7 chr12 1433719 1434021 -142352434 + AluSq SINE Alu 1 301 -12 270 222 0 32 chr12 1434178 1434241 -142352214 - MIR SINE MIR -98 164 104 998 8 8 0 chr12 1435211 1435330 -142351125 + (TCTA)n Simple_repeat Simple_repeat 3 122 0 222 118 0 0 chr12 1436068 1436102 -142350353 + (CA)n Simple_repeat Simple_repeat 2 35 0 1126 290 19 17 chr12 1436246 1436712 -142349743 + L1M4 LINE L1 2345 2811 -3335 1350 199 16 26 chr12 1436716 1437120 -142349335 - MER93b LTR ERV1 0 373 17 3305 149 26 26 chr12 1437142 1437804 -142348651 + L1MA5 LINE L1 5374 6035 -265 924 164 72 125 chr12 1437804 1438108 -142348347 + LTR8A LTR ERV1 1 288 -439 1988 100 0 37 chr12 1438118 1438388 -142348067 - AluSc SINE Alu -49 260 1 1345 189 65 92 chr12 1438442 1438886 -142347569 + LTR8A LTR ERV1 290 721 -6 1338 138 40 4 chr12 1438889 1439142 -142347313 + L1MA5 LINE L1 6037 6298 -2 2233 109 0 0 chr12 1439369 1439688 -142346767 + AluY SINE Alu 1 311 0 1047 130 6 0 chr12 1440304 1440473 -142345982 - L1MB2 LINE L1 -7 6164 5995 904 175 102 84 chr12 1441021 1441110 -142345345 - MER39 LTR ERV1 -59 648 562 1794 147 0 11 chr12 1441110 1441395 -142345060 + AluJo SINE Alu 1 282 -30 1198 44 19 0 chr12 1441398 1441558 -142344897 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 904 175 102 84 chr12 1441558 1441846 -142344609 - MER39 LTR ERV1 -146 561 260 353 212 30 30 chr12 1441822 1441921 -142344534 - LTR48B LTR ERV1 -545 99 1 * 645 296 13 52 chr12 1442027 1442260 -142344195 + MIR SINE MIR 37 260 -2 2271 116 0 3 chr12 1442325 1442626 -142343829 - AluSx SINE Alu -12 300 1 635 187 37 86 chr12 1443244 1443431 -142343024 - MIR SINE MIR -2 260 83 351 241 76 12 chr12 1444068 1444236 -142342219 + MIR SINE MIR 4 256 -6 210 37 0 0 chr12 1445252 1445279 -142341176 + (CA)n Simple_repeat Simple_repeat 2 28 0 440 252 45 18 chr12 1445282 1445393 -142341062 - L2 LINE L2 -17 3296 3183 238 211 18 18 chr12 1445393 1445450 -142341005 + GA-rich Low_complexity Low_complexity 1 57 0 1444 191 21 50 chr12 1445593 1445913 -142340542 + MLT1A1 LTR MaLR 1 310 -55 2018 132 12 21 chr12 1445913 1446253 -142340202 + MER1B DNA MER1_type 1 337 0 1444 191 21 50 chr12 1446253 1446308 -142340147 + MLT1A1 LTR MaLR 310 365 0 1994 144 6 10 chr12 1446500 1446812 -142339643 - AluSx SINE Alu -1 311 1 213 219 110 68 chr12 1447135 1447208 -142339247 + MIR3 SINE MIR 88 163 -45 220 234 0 0 chr12 1447226 1447273 -142339182 - MIR SINE MIR -6 256 210 778 297 33 0 chr12 1447307 1447519 -142338936 - MIR SINE MIR -31 231 13 465 326 21 0 chr12 1447537 1447678 -142338777 - MIR SINE MIR -115 147 4 1387 135 120 68 chr12 1449901 1449958 -142336497 - MER2 DNA MER2_type -2 342 289 216 97 0 0 chr12 1449958 1449989 -142336466 + (TA)n Simple_repeat Simple_repeat 1 31 0 1387 135 120 68 chr12 1449989 1450115 -142336340 - MER2 DNA MER2_type -55 289 171 2056 131 0 0 chr12 1450115 1450419 -142336036 + AluSx SINE Alu 1 304 0 1387 135 120 68 chr12 1450419 1450558 -142335897 - MER2 DNA MER2_type -173 171 1 1068 249 69 39 chr12 1452141 1452503 -142333952 + MLT1A2 LTR MaLR 1 373 -1 27 0 0 0 chr12 1452575 1452602 -142333853 + AT_rich Low_complexity Low_complexity 1 27 0 736 144 0 0 chr12 1452602 1452713 -142333742 - FLAM_A SINE Alu -26 116 6 1288 167 13 34 chr12 1453232 1453466 -142332989 - AluJo SINE Alu -13 299 71 866 282 16 37 chr12 1453833 1454078 -142332377 + MIR SINE MIR 22 261 -1 249 211 0 0 chr12 1454139 1454196 -142332259 + (TA)n Simple_repeat Simple_repeat 2 58 0 790 149 0 45 chr12 1454221 1454355 -142332100 - FLAM_C SINE Alu -5 128 1 2171 108 3 0 chr12 1454414 1454702 -142331753 - AluSx SINE Alu -23 289 1 678 162 11 123 chr12 1454891 1454934 -142331521 + MLT1A1 LTR MaLR 1 47 -318 1966 132 3 7 chr12 1454934 1455267 -142331188 - AluSx SINE Alu 0 332 1 678 162 11 123 chr12 1455267 1455400 -142331055 + MLT1A1 LTR MaLR 47 159 -206 407 143 0 0 chr12 1455404 1455474 -142330981 + L1PA16 LINE L1 6095 6164 -2 375 181 0 0 chr12 1455769 1455841 -142330614 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 991 247 9 0 chr12 1455858 1456077 -142330378 + MLT1A1 LTR MaLR 145 365 0 192 234 0 0 chr12 1456891 1456938 -142329517 + GA-rich Low_complexity Low_complexity 2 48 0 425 225 116 25 chr12 1457384 1457478 -142328977 - L1MEd LINE L1 -2927 3202 3118 279 0 0 0 chr12 1457478 1457509 -142328946 + (TG)n Simple_repeat Simple_repeat 2 32 0 425 225 116 25 chr12 1457509 1457571 -142328884 - L1MEd LINE L1 -3011 3118 3063 2224 105 26 0 chr12 1457571 1457875 -142328580 - AluSx SINE Alu 0 312 1 425 225 116 25 chr12 1457875 1458001 -142328454 - L1MEd LINE L1 -3066 3063 2893 473 211 119 32 chr12 1458116 1458301 -142328154 - L1MEd LINE L1 -4976 1143 943 724 286 113 0 chr12 1458407 1458620 -142327835 - MIR SINE MIR -6 256 20 22 35 0 0 chr12 1458620 1458649 -142327806 + AT_rich Low_complexity Low_complexity 1 29 0 198 191 0 0 chr12 1458785 1458832 -142327623 + (CTA)n Simple_repeat Simple_repeat 2 48 0 2581 55 3 0 chr12 1458890 1459200 -142327255 + AluY SINE Alu 1 311 0 2962 183 29 87 chr12 1459211 1460802 -142325653 + L1MB7 LINE L1 4672 6169 -15 1876 160 3 22 chr12 1460872 1461190 -142325265 + AluJo SINE Alu 1 312 0 699 180 65 40 chr12 1461291 1461491 -142324964 + MLT1A1 LTR MaLR 158 362 -3 366 312 76 73 chr12 1461494 1461795 -142324660 - L1MC4a LINE L1 -1106 6702 6401 1932 130 18 0 chr12 1461840 1462124 -142324331 + AluJb SINE Alu 1 289 -23 1996 267 67 23 chr12 1462152 1462994 -142323461 - L1MC4a LINE L1 -1468 6340 5462 372 331 47 39 chr12 1463081 1463465 -142322990 - L1MEd LINE L1 -5589 530 144 294 355 59 13 chr12 1463572 1463724 -142322731 + L2 LINE L2 3114 3272 0 1801 146 140 29 chr12 1465257 1465642 -142320813 - MSTA LTR MaLR 0 428 1 2497 63 3 0 chr12 1465702 1466005 -142320450 - AluY SINE Alu -7 304 1 2307 67 40 3 chr12 1466079 1466377 -142320078 - AluY SINE Alu -1 310 2 378 0 0 0 chr12 1466474 1466516 -142319939 + (CA)n Simple_repeat Simple_repeat 2 43 0 1782 145 7 24 chr12 1466589 1466878 -142319577 - AluJb SINE Alu -28 284 1 1145 194 118 0 chr12 1467793 1468108 -142318347 + MER31A LTR ERV1 128 479 -6 1696 206 82 5 chr12 1468156 1469053 -142317402 + L1MDa LINE L1 119 1125 -5415 29 90 0 0 chr12 1469662 1469740 -142316715 + AT_rich Low_complexity Low_complexity 1 78 0 23 0 0 0 chr12 1469766 1469789 -142316666 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 1469982 1470004 -142316451 + AT_rich Low_complexity Low_complexity 1 22 0 373 345 76 29 chr12 1470738 1471013 -142315442 + L2 LINE L2 2165 2452 -862 357 232 58 29 chr12 1471158 1471300 -142315155 + MLT1J2 LTR MaLR 295 391 -18 289 329 13 87 chr12 1471311 1471621 -142314834 + L2 LINE L2 2564 2850 -464 2294 59 55 3 chr12 1471755 1472044 -142314411 - AluY SINE Alu -7 304 1 1276 235 154 28 chr12 1472279 1472713 -142313742 - MLT1D LTR MaLR 0 505 17 1719 189 63 85 chr12 1472759 1473204 -142313251 - MLT1D-int LTR MaLR 0 1371 937 499 268 67 58 chr12 1473257 1473458 -142312997 + L1ME3A LINE L1 5940 6145 -25 2224 113 0 13 chr12 1473458 1473758 -142312697 - AluSx SINE Alu -16 296 1 499 268 67 58 chr12 1473758 1473780 -142312675 + L1ME3A LINE L1 6145 6165 -5 2340 105 3 0 chr12 1473787 1474092 -142312363 + AluSg SINE Alu 1 306 -4 2555 26 0 10 chr12 1474539 1474841 -142311614 + AluY SINE Alu 1 299 -12 712 264 94 24 chr12 1476071 1476283 -142310172 + MIR SINE MIR 1 227 -35 1131 145 0 0 chr12 1476475 1476641 -142309814 - AluSg/x SINE Alu -15 297 132 22 0 0 0 chr12 1477286 1477308 -142309147 + AT_rich Low_complexity Low_complexity 1 22 0 246 290 29 0 chr12 1477478 1477547 -142308908 - MIR3 SINE MIR -35 173 103 383 267 59 81 chr12 1477631 1477867 -142308588 + MER102a DNA MER1_type 78 308 -22 308 337 34 0 chr12 1477949 1478038 -142308417 - MIR3 SINE MIR -111 97 6 636 174 0 97 chr12 1478628 1478783 -142307672 + FLAM_C SINE Alu 4 143 0 693 227 38 3 chr12 1479985 1480187 -142306268 - L1ME2 LINE L1 -206 5968 5756 805 234 78 34 chr12 1480188 1480562 -142305893 + MLT1F LTR MaLR 1 540 -2 364 265 18 71 chr12 1480562 1480732 -142305723 + MLT1F-int LTR MaLR 1 161 -1210 * 711 268 77 4 chr12 1480718 1480953 -142305502 + MLT1F-int LTR MaLR 265 516 -855 2246 99 0 3 chr12 1484088 1484390 -142302065 + AluSg1 SINE Alu 1 301 -8 263 289 141 21 chr12 1484504 1484646 -142301809 - MIR SINE MIR -47 215 57 1735 147 67 56 chr12 1484661 1485021 -142301434 + THE1B LTR MaLR 1 364 0 216 67 0 0 chr12 1485269 1485299 -142301156 + (A)n Simple_repeat Simple_repeat 1 30 0 2259 120 0 0 chr12 1486315 1486624 -142299831 - AluSc SINE Alu 0 309 1 607 164 9 0 chr12 1487520 1487630 -142298825 - L1MB3 LINE L1 -1 6182 6072 186 292 42 42 chr12 1488320 1488392 -142298063 - MIR SINE MIR -72 190 119 211 264 42 42 chr12 1488412 1488484 -142297971 - MIR SINE MIR -72 190 119 202 274 41 41 chr12 1488503 1488576 -142297879 - MIR SINE MIR -71 191 119 480 273 31 37 chr12 1488595 1488756 -142297699 - MIR SINE MIR -71 191 32 1851 158 20 0 chr12 1488793 1489091 -142297364 + L1MB1 LINE L1 5864 6167 -1 1782 131 55 24 chr12 1489111 1489402 -142297053 + AluJb SINE Alu 1 300 -12 307 154 115 0 chr12 1491738 1491816 -142294639 - L1ME4a LINE L1 -4 6117 6031 210 71 0 0 chr12 1492150 1492178 -142294277 + (A)n Simple_repeat Simple_repeat 1 28 0 2484 142 78 2 chr12 1493900 1494338 -142292117 - L1MB2 LINE L1 0 6171 5701 430 310 0 0 chr12 1494564 1494677 -142291778 + L2 LINE L2 3192 3304 -9 364 158 0 0 chr12 1494885 1494942 -142291513 - AluS SINE Alu -251 57 1 2186 111 3 7 chr12 1495060 1495357 -142291098 - AluSx SINE Alu -16 296 1 2172 118 0 0 chr12 1495920 1496224 -142290231 - AluSx SINE Alu -8 304 1 253 281 124 47 chr12 1496714 1496897 -142289558 + L1ME4a LINE L1 5800 6016 -105 2301 81 34 0 chr12 1496897 1497195 -142289260 - AluY SINE Alu -3 308 1 253 281 124 47 chr12 1497195 1497310 -142289145 + L1ME4a LINE L1 6016 6121 0 225 0 0 0 chr12 1498523 1498548 -142287907 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1279 134 125 69 chr12 1499008 1499219 -142287236 - L1MA8 LINE L1 0 6291 6054 2284 107 0 3 chr12 1499219 1499527 -142286928 - AluSx SINE Alu -5 307 1 1279 134 125 69 chr12 1499527 1499635 -142286820 - L1MA8 LINE L1 -237 6054 5954 616 220 8 0 chr12 1499844 1499976 -142286479 - MLT1A1 LTR MaLR 0 365 233 618 139 9 26 chr12 1499999 1500114 -142286341 - MLT1A1 LTR MaLR -252 113 1 1138 136 0 23 chr12 1500863 1501039 -142285416 + FRAM SINE Alu 1 166 -10 1737 173 6 31 chr12 1501234 1501552 -142284903 + AluJb SINE Alu 3 312 0 2023 142 3 3 chr12 1501635 1501946 -142284509 - AluSx SINE Alu -1 311 1 4221 102 38 8 chr12 1502730 1503339 -142283116 + THE1C-int LTR MaLR 954 1580 0 2240 104 122 3 chr12 1503339 1503674 -142282781 + THE1C LTR MaLR 1 375 0 1296 242 116 17 chr12 1503675 1504150 -142282305 - L1MCc LINE L1 -4025 3097 2576 * 4067 173 61 41 chr12 1504146 1505183 -142281272 - L1MB3 LINE L1 0 6183 5128 379 250 62 76 chr12 1505183 1505327 -142281128 - L1MCc LINE L1 -4532 2590 2449 1654 160 6 66 chr12 1505327 1505659 -142280796 + AluJo SINE Alu 1 312 0 379 250 62 76 chr12 1505659 1505738 -142280717 - L1MCc LINE L1 -4673 2449 2370 2186 158 18 23 chr12 1505750 1506135 -142280320 + MLT1B LTR MaLR 2 384 -6 1373 261 38 60 chr12 1506140 1507155 -142279300 - L1MCc LINE L1 -4760 2362 877 3441 209 48 22 chr12 1507848 1508579 -142277876 + MER21B LTR ERV1 1 750 -113 1011 223 67 10 chr12 1509084 1509384 -142277071 - L1MA4 LINE L1 -3 6297 5981 2053 155 33 0 chr12 1510953 1511288 -142275167 + MER7A DNA MER2_type 3 346 0 1178 159 0 0 chr12 1511735 1511917 -142274538 + AluJb SINE Alu 129 310 -2 1725 235 94 61 chr12 1512273 1512527 -142273928 + L1MC4 LINE L1 6450 6694 -1348 2106 85 4 15 chr12 1512527 1512798 -142273657 - AluSp SINE Alu -9 304 37 1725 235 94 61 chr12 1512798 1513104 -142273351 + L1MC4 LINE L1 6694 7029 -1013 1498 210 85 33 chr12 1513409 1513461 -142272994 + L1MC4 LINE L1 7025 7073 -969 258 105 0 0 chr12 1513461 1513499 -142272956 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1498 210 85 33 chr12 1513499 1513904 -142272551 + L1MC4 LINE L1 7073 7506 -536 258 222 48 0 chr12 1513999 1514062 -142272393 + L1MC4 LINE L1 7921 7986 -56 * 568 226 195 0 chr12 1514048 1514212 -142272243 - L1MC4 LINE L1 -969 7073 6878 24 32 0 0 chr12 1514217 1514248 -142272207 + AT_rich Low_complexity Low_complexity 1 31 0 293 282 204 33 chr12 1514533 1514714 -142271741 + L3 LINE CR1 1334 1545 -32 207 0 0 0 chr12 1514955 1514978 -142271477 + (T)n Simple_repeat Simple_repeat 1 23 0 387 322 51 6 chr12 1514981 1515158 -142271297 + L3b LINE CR1 1296 1480 -103 2235 119 3 0 chr12 1515382 1515692 -142270763 + AluSq SINE Alu 1 311 -2 304 220 154 55 chr12 1515816 1515998 -142270457 + L1ME2 LINE L1 5100 5299 -847 3235 208 94 17 chr12 1516035 1516811 -142269644 + L1ME2 LINE L1 5304 6139 -25 315 0 0 0 chr12 1517694 1517729 -142268726 + (TG)n Simple_repeat Simple_repeat 2 36 0 2266 97 0 10 chr12 1518508 1518816 -142267639 - AluSc SINE Alu -4 305 1 33 25 0 0 chr12 1518899 1518939 -142267516 + AT_rich Low_complexity Low_complexity 1 40 0 2077 165 0 53 chr12 1520074 1520486 -142265969 - MLT1B LTR MaLR 0 390 1 3482 142 2 19 chr12 1521536 1522072 -142264383 - MER1A DNA MER1_type 0 527 1 2176 124 10 0 chr12 1522317 1522616 -142263839 + AluSx SINE Alu 1 302 -10 206 170 0 21 chr12 1522627 1522674 -142263781 + GA-rich Low_complexity Low_complexity 1 46 0 387 242 183 0 chr12 1522746 1522866 -142263589 - MIR3 SINE MIR -12 196 55 798 180 0 0 chr12 1525140 1525262 -142261193 + FLAM_A SINE Alu 1 122 -11 285 291 104 30 chr12 1525930 1526064 -142260391 + MIR3 SINE MIR 64 207 -1 1882 183 0 3 chr12 1526363 1526674 -142259781 + AluJb SINE Alu 1 310 -2 284 155 0 17 chr12 1526674 1526732 -142259723 + GA-rich Low_complexity Low_complexity 1 57 0 242 239 0 0 chr12 1526764 1526810 -142259645 - L2 LINE L2 -3 3310 3265 2410 94 0 10 chr12 1527016 1527323 -142259132 - AluSg SINE Alu -6 304 1 1205 132 0 0 chr12 1527479 1527646 -142258809 + FRAM SINE Alu 1 166 -10 199 328 120 8 chr12 1529294 1529419 -142257036 - L2 LINE L2 0 3272 3134 189 342 58 49 chr12 1529569 1529812 -142256643 - L2 LINE L2 -444 2870 2626 1880 167 0 16 chr12 1529845 1529978 -142256477 + AluJo SINE Alu 1 135 -177 2143 97 31 7 chr12 1529978 1530267 -142256188 + AluY SINE Alu 1 296 -15 1880 167 0 16 chr12 1530267 1530444 -142256011 + AluJo SINE Alu 135 306 -6 21 0 0 0 chr12 1530506 1530527 -142255928 + AT_rich Low_complexity Low_complexity 1 21 0 646 276 131 8 chr12 1530645 1531011 -142255444 + L1ME4a LINE L1 5507 5917 -204 185 356 26 26 chr12 1531025 1531140 -142255315 - L2 LINE L2 -995 2319 2205 365 169 24 48 chr12 1531251 1531334 -142255121 + MIR SINE MIR 181 261 -1 1444 252 122 33 chr12 1531628 1532508 -142253947 - L1ME3A LINE L1 -14 6156 5355 2494 49 14 0 chr12 1532508 1532796 -142253659 + AluY SINE Alu 1 292 -19 1444 252 122 33 chr12 1532796 1533458 -142252997 - L1ME3A LINE L1 -815 5355 4458 234 315 151 20 chr12 1533458 1533604 -142252851 - L2 LINE L2 -1400 1914 1750 24 0 0 0 chr12 1534089 1534113 -142252342 + AT_rich Low_complexity Low_complexity 1 24 0 1101 181 117 37 chr12 1534923 1535222 -142251233 - MER44D DNA MER2_type -8 601 9 305 339 39 47 chr12 1535838 1536071 -142250384 - L3 LINE CR1 -291 1286 1056 2316 99 6 6 chr12 1536430 1536743 -142249712 - AluSq SINE Alu 0 313 1 1489 188 18 70 chr12 1536745 1537011 -142249444 - L1MB8 LINE L1 0 6178 5943 2193 132 0 3 chr12 1537011 1537315 -142249140 + AluJb SINE Alu 1 303 -9 1489 188 18 70 chr12 1537315 1537489 -142248966 - L1MB8 LINE L1 -235 5943 5761 2146 120 0 13 chr12 1537674 1537990 -142248465 - AluSx SINE Alu 0 312 1 2545 54 3 0 chr12 1538020 1538314 -142248141 + AluY SINE Alu 1 295 -16 374 345 58 29 chr12 1538314 1538485 -142247970 - L1MB8 LINE L1 -2081 5727 5552 2302 79 7 23 chr12 1538568 1538873 -142247582 - AluSg SINE Alu -4 306 7 1806 173 0 26 chr12 1538879 1539185 -142247270 - AluJo SINE Alu -14 298 1 2438 105 0 0 chr12 1539194 1539499 -142246956 - AluSg SINE Alu -5 305 1 281 254 18 0 chr12 1539506 1539616 -142246839 - L1MB8 LINE L1 -2400 5408 5297 355 274 53 16 chr12 1540064 1540254 -142246201 - L1MB8 LINE L1 -1365 4781 4585 310 213 106 43 chr12 1540253 1540394 -142246061 + L1ME4a LINE L1 5939 6088 -33 * 2130 106 0 3 chr12 1540408 1540721 -142245734 - AluSx SINE Alu 0 312 1 252 0 0 0 chr12 1541369 1541397 -142245058 + (T)n Simple_repeat Simple_repeat 1 28 0 1629 171 7 50 chr12 1541419 1541717 -142244738 + AluJb SINE Alu 1 285 -27 261 256 0 31 chr12 1541722 1541851 -142244604 + GA-rich Low_complexity Low_complexity 4 128 0 2512 72 0 3 chr12 1541853 1542159 -142244296 + AluY SINE Alu 1 305 -6 731 165 0 9 chr12 1542162 1542277 -142244178 - FLAM_A SINE Alu -19 114 1 572 178 62 75 chr12 1542410 1542556 -142243899 + AluJb SINE Alu 5 148 -164 535 218 137 8 chr12 1542556 1542680 -142243775 - MIR SINE MIR -108 154 15 216 114 29 0 chr12 1543483 1543518 -142242937 + MIR SINE MIR 222 257 -5 229 303 50 42 chr12 1543804 1543923 -142242532 + MIR3 SINE MIR 9 128 -80 309 82 20 0 chr12 1545040 1545089 -142241366 + FLAM SINE Alu 84 133 0 218 227 0 0 chr12 1545392 1545436 -142241019 - L2 LINE L2 -5 3308 3265 2065 101 38 3 chr12 1547257 1547545 -142238910 + AluSx SINE Alu 1 298 -14 270 0 0 0 chr12 1547545 1547575 -142238880 + (TA)n Simple_repeat Simple_repeat 2 31 0 1750 157 3 20 chr12 1551177 1551476 -142234979 + AluJo SINE Alu 1 294 -18 346 270 86 90 chr12 1551658 1551891 -142234564 + L1MC5 LINE L1 7695 7926 -35 576 289 82 14 chr12 1552048 1552256 -142234199 - MIR SINE MIR -28 234 13 1705 157 11 0 chr12 1552806 1553073 -142233382 - AluJo SINE Alu -30 282 13 183 303 83 46 chr12 1553213 1553322 -142233133 - MIR3 SINE MIR -95 113 1 2331 105 0 9 chr12 1555256 1555571 -142230884 - AluSx SINE Alu 0 312 1 242 212 61 61 chr12 1555857 1555956 -142230499 + L2 LINE L2 3138 3236 -36 216 0 0 0 chr12 1556631 1556655 -142229800 + (TG)n Simple_repeat Simple_repeat 2 25 0 1461 101 0 55 chr12 1557914 1558132 -142228323 - AluSp SINE Alu 0 313 108 304 351 18 0 chr12 1559570 1559681 -142226774 + L2 LINE L2 3200 3312 -1 288 289 47 8 chr12 1559682 1559810 -142226645 - MIR3 SINE MIR -75 133 1 2296 195 29 67 chr12 1559866 1559906 -142226549 + L1MB3 LINE L1 5573 5613 -570 2201 110 3 10 chr12 1559906 1560207 -142226248 + AluSp SINE Alu 3 301 -12 2296 195 29 67 chr12 1560207 1560798 -142225657 + L1MB3 LINE L1 5613 6180 -3 555 190 33 109 chr12 1560827 1561038 -142225417 + L1MB4 LINE L1 5986 6180 0 1935 133 61 0 chr12 1561050 1561329 -142225126 + AluSx SINE Alu 1 296 -16 200 176 14 108 chr12 1561814 1561841 -142224614 - L3 LINE CR1 -142 1435 1407 1908 150 38 10 chr12 1561841 1562134 -142224321 - AluJb SINE Alu -11 301 1 200 176 14 108 chr12 1562134 1562180 -142224275 - L3 LINE CR1 -170 1407 1369 * 347 364 50 0 chr12 1562177 1562317 -142224138 - MIR3 SINE MIR -3 205 59 273 401 46 7 chr12 1562476 1562628 -142223827 - L3 LINE CR1 -1186 391 234 2601 43 0 3 chr12 1562652 1562954 -142223501 + AluY SINE Alu 1 301 -10 263 130 0 74 chr12 1562981 1563035 -142223420 - MER58B DNA MER1_type 0 341 292 479 234 161 2 chr12 1563036 1563191 -142223264 + MER45A DNA AcHobo 1 178 0 754 222 159 0 chr12 1563191 1563448 -142223007 - MER58B DNA MER1_type -43 298 1 237 255 0 0 chr12 1564807 1564854 -142221601 - L2 LINE L2 -4 3309 3263 4884 143 29 2 chr12 1564881 1565757 -142220698 - L1MA7 LINE L1 -2 6289 5391 2033 117 0 7 chr12 1565757 1566038 -142220417 + AluSx SINE Alu 34 312 0 2763 180 16 11 chr12 1566042 1566999 -142219456 + L1M2 LINE L1 2472 3432 -3416 1181 102 0 0 chr12 1567007 1567164 -142219291 + AluSp/q SINE Alu 155 311 -2 5673 126 22 4 chr12 1567166 1567913 -142218542 + L1MA4A LINE L1 5315 6084 -219 2488 67 0 16 chr12 1567913 1568226 -142218229 + AluY SINE Alu 1 308 -3 5673 126 22 4 chr12 1568226 1568450 -142218005 + L1MA4A LINE L1 6084 6303 0 237 290 93 19 chr12 1568789 1568896 -142217559 + MIR SINE MIR 117 231 -31 3269 164 18 37 chr12 1569056 1569796 -142216659 - L1MD2 LINE L1 -456 5903 5175 1370 213 26 11 chr12 1569798 1570150 -142216305 - L1MD2 LINE L1 -1007 5139 4783 1838 126 3 99 chr12 1570161 1570495 -142215960 - AluSx SINE Alu -10 302 1 2632 158 55 2 chr12 1570688 1571212 -142215243 - L1MB3 LINE L1 -1 6182 5631 574 264 34 0 chr12 1571859 1572007 -142214448 + MIR SINE MIR 48 200 -62 2047 124 0 50 chr12 1574150 1574473 -142211982 + AluSx SINE Alu 1 307 -5 1011 182 6 0 chr12 1574810 1574980 -142211475 - AluJb SINE Alu -5 307 137 1983 107 66 17 chr12 1575076 1575365 -142211090 - AluSc SINE Alu -5 304 2 1259 169 76 76 chr12 1575474 1575753 -142210702 + MER2 DNA MER2_type 1 282 -62 2093 130 0 46 chr12 1575753 1575891 -142210564 + AluSx SINE Alu 1 144 -168 2065 108 45 3 chr12 1575891 1576179 -142210276 + AluSx SINE Alu 1 300 -12 2093 130 0 46 chr12 1576179 1576363 -142210092 + AluSx SINE Alu 144 308 -4 1259 169 76 76 chr12 1576363 1576427 -142210028 + MER2 DNA MER2_type 281 344 0 2367 82 7 0 chr12 1576677 1576970 -142209485 - AluSp SINE Alu -18 295 1 229 307 118 8 chr12 1578237 1578364 -142208091 - MIR3 SINE MIR -38 170 30 233 267 44 22 chr12 1578415 1578505 -142207950 + L2 LINE L2 3140 3231 -82 831 108 0 58 chr12 1578731 1578870 -142207585 - FLAM_C SINE Alu -2 131 1 349 314 36 67 chr12 1579131 1579185 -142207270 - MIR SINE MIR -3 259 205 1965 148 0 16 chr12 1579185 1579488 -142206967 - AluJb SINE Alu -14 298 1 349 314 36 67 chr12 1579488 1579627 -142206828 - MIR SINE MIR -57 205 72 1938 123 63 26 chr12 1579806 1580157 -142206298 - THE1B LTR MaLR 0 364 1 2167 148 0 0 chr12 1580163 1580467 -142205988 + AluJb SINE Alu 8 311 -1 2519 56 0 3 chr12 1580973 1581275 -142205180 - AluY SINE Alu -10 301 1 245 164 16 33 chr12 1581694 1581755 -142204700 + CT-rich Low_complexity Low_complexity 4 63 0 2094 99 82 0 chr12 1582395 1582677 -142203778 + AluSq SINE Alu 1 305 -8 237 208 26 26 chr12 1584241 1584318 -142202137 + G-rich Low_complexity Low_complexity 4 80 0 31 26 0 0 chr12 1584707 1584745 -142201710 + GC_rich Low_complexity Low_complexity 1 38 0 43 92 0 0 chr12 1584805 1584925 -142201530 + GC_rich Low_complexity Low_complexity 1 120 0 183 100 0 0 chr12 1584979 1585009 -142201446 + (CCG)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr12 1585074 1585109 -142201346 + GC_rich Low_complexity Low_complexity 1 35 0 1960 143 6 37 chr12 1588416 1588738 -142197717 - AluJb SINE Alu 0 312 1 306 299 0 0 chr12 1588742 1588819 -142197636 + MIR3 SINE MIR 125 201 -7 433 281 100 38 chr12 1589973 1590183 -142196272 + MIR SINE MIR 28 250 -12 637 67 79 0 chr12 1590468 1590557 -142195898 + AluS SINE Alu 2 97 -215 1318 182 10 0 chr12 1590563 1590772 -142195683 - AluJo SINE Alu -101 211 1 820 272 313 5 chr12 1590772 1590900 -142195555 + L2 LINE L2 1983 2070 -1244 1847 184 36 0 chr12 1590900 1591236 -142195219 + MER7A DNA MER2_type 1 346 0 820 272 313 5 chr12 1591236 1591765 -142194690 + L2 LINE L2 2070 2843 -471 667 278 46 49 chr12 1591757 1592041 -142194414 + L2 LINE L2 3030 3312 -1 * 1700 166 42 7 chr12 1592099 1592388 -142194067 + AluJo SINE Alu 1 299 -13 1004 204 11 0 chr12 1592982 1593168 -142193287 - MER20 DNA MER1_type -3 216 29 392 320 76 31 chr12 1593625 1593850 -142192605 + MIR SINE MIR 20 254 -8 615 212 97 6 chr12 1594266 1594431 -142192024 + MER104 DNA MER2_type 1 180 0 2475 71 3 0 chr12 1595244 1595541 -142190914 + AluSc SINE Alu 1 298 -11 371 204 150 84 chr12 1595617 1595784 -142190671 + MIR SINE MIR 85 262 0 2294 106 0 16 chr12 1596150 1596453 -142190002 + AluSx SINE Alu 1 298 -14 390 295 8 0 chr12 1596725 1596742 -142189713 - L1MA10 LINE L1 0 6334 6318 1131 221 26 75 chr12 1596742 1597091 -142189364 - L1ME2 LINE L1 -9 6155 5824 1175 161 19 10 chr12 1597092 1597278 -142189177 - AluJo SINE Alu -5 307 117 207 0 0 0 chr12 1597278 1597301 -142189154 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1175 161 19 10 chr12 1597301 1597319 -142189136 - AluJo SINE Alu -195 117 101 1739 186 48 55 chr12 1597322 1597573 -142188882 - L1MC4a LINE L1 -73 7735 7487 1902 95 0 4 chr12 1597573 1597816 -142188639 - AluSx SINE Alu -16 296 55 1739 186 48 55 chr12 1597816 1598022 -142188433 - L1MC4a LINE L1 -321 7487 7281 862 268 124 29 chr12 1598099 1598576 -142187879 - L1MEc LINE L1 -4323 2073 1552 923 145 0 14 chr12 1598591 1598729 -142187726 + AluJb SINE Alu 1 136 -176 2390 87 10 0 chr12 1598729 1599028 -142187427 + AluY SINE Alu 1 302 -9 993 206 10 20 chr12 1599400 1599604 -142186851 + AluJo SINE Alu 100 301 -11 2431 86 0 0 chr12 1599782 1600083 -142186372 - AluY SINE Alu -10 301 1 283 313 50 0 chr12 1601866 1601965 -142184490 + MIR SINE MIR 70 173 -89 872 214 34 15 chr12 1601965 1602171 -142184284 + MER119 DNA MER1_type 356 565 -18 543 330 18 0 chr12 1602171 1602389 -142184066 - HsTC2c DNA Tc2 -6 723 502 2056 115 100 54 chr12 1602389 1602741 -142183714 + MSTA LTR MaLR 1 335 -93 2360 78 10 0 chr12 1602741 1603037 -142183418 + AluY SINE Alu 1 299 -12 180 0 0 0 chr12 1603042 1603062 -142183393 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2056 115 100 54 chr12 1603062 1603112 -142183343 + MSTA LTR MaLR 338 428 0 8830 129 40 42 chr12 1603114 1603598 -142182857 + MSTA-int LTR MaLR 3 486 -1094 2249 129 3 3 chr12 1603598 1603908 -142182547 + AluSx SINE Alu 1 310 -2 8830 129 40 42 chr12 1603908 1605004 -142181451 + MSTA-int LTR MaLR 486 1580 0 1707 119 116 12 chr12 1605006 1605325 -142181130 + MSTA LTR MaLR 3 354 -74 1098 237 93 11 chr12 1605355 1605710 -142180745 - HsTC2c DNA Tc2 -267 462 79 222 246 116 0 chr12 1606237 1606306 -142180149 - L2 LINE L2 -1527 1787 1711 342 246 73 9 chr12 1607140 1607250 -142179205 + MER103 DNA DNA 2 118 -48 181 338 68 38 chr12 1607984 1608117 -142178338 + L2 LINE L2 3136 3272 0 2405 99 0 0 chr12 1609009 1609311 -142177144 - AluSq SINE Alu -11 302 1 880 114 19 25 chr12 1609498 1609656 -142176799 - L1MB3 LINE L1 -1 6182 6026 267 191 79 0 chr12 1609683 1609746 -142176709 - L1MB3 LINE L1 -161 6022 5955 1973 135 3 21 chr12 1609777 1610065 -142176390 - AluJo SINE Alu -21 291 9 650 146 50 70 chr12 1610073 1610192 -142176263 - L1MB4 LINE L1 -214 5966 5879 2534 61 0 0 chr12 1610192 1610485 -142175970 - AluY SINE Alu -18 293 1 650 146 50 70 chr12 1610485 1610599 -142175856 - L1MB4 LINE L1 -301 5879 5764 3990 133 16 6 chr12 1610637 1611328 -142175127 - L1MA7 LINE L1 0 6291 5594 1199 226 80 23 chr12 1611332 1611633 -142174822 - MLT1A1 LTR MaLR -47 318 1 1661 149 91 84 chr12 1611633 1611717 -142174738 - MLT1A1-int LTR MaLR 0 1735 1653 2412 86 10 0 chr12 1611717 1612021 -142174434 - AluSp SINE Alu -6 307 1 2424 82 13 0 chr12 1612021 1612325 -142174130 - AluSp SINE Alu -5 308 1 1661 149 91 84 chr12 1612325 1612655 -142173800 - MLT1A1-int LTR MaLR -81 1654 1317 281 196 333 0 chr12 1612754 1612856 -142173599 + L2 LINE L2 3137 3272 0 2580 52 0 0 chr12 1612972 1613263 -142173192 - AluY SINE Alu -20 291 1 246 32 0 0 chr12 1613472 1613503 -142172952 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 218 286 18 0 chr12 1613916 1613972 -142172483 - L2 LINE L2 -6 3266 3210 1187 193 42 8 chr12 1614061 1614320 -142172135 - MLT1C LTR MaLR 0 467 200 389 184 13 0 chr12 1614376 1614452 -142172003 - MLT1C LTR MaLR -390 77 1 182 254 115 111 chr12 1614488 1614531 -142171924 + L2 LINE L2 3055 3096 -176 2073 142 0 3 chr12 1614531 1614827 -142171628 - AluSg SINE Alu -15 295 1 182 254 115 111 chr12 1614827 1615000 -142171455 + L2 LINE L2 3096 3272 0 267 103 0 0 chr12 1615000 1615039 -142171416 + (TGGA)n Simple_repeat Simple_repeat 2 40 0 478 255 20 33 chr12 1615381 1615534 -142170921 - MER5B DNA MER1_type -26 152 2 427 220 44 0 chr12 1615535 1615626 -142170829 - MIR3 SINE MIR -48 160 66 377 303 16 16 chr12 1615796 1615918 -142170537 + L2 LINE L2 3191 3312 -1 * 473 286 18 75 chr12 1615897 1616039 -142170416 - MIR SINE MIR 0 262 134 2253 98 14 0 chr12 1616039 1616358 -142170097 + AluSx SINE Alu 1 323 0 473 286 18 75 chr12 1616358 1616440 -142170015 - MIR SINE MIR -128 134 49 477 0 0 0 chr12 1616743 1616796 -142169659 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr12 1617445 1617467 -142168988 + AT_rich Low_complexity Low_complexity 1 22 0 850 172 14 0 chr12 1617468 1617613 -142168842 - FRAM SINE Alu -25 151 5 272 325 158 17 chr12 1618370 1618490 -142167965 + MIR SINE MIR 16 152 -56 800 201 6 13 chr12 1618491 1618650 -142167805 + FRAM SINE Alu 1 158 -8 2198 130 0 0 chr12 1618652 1618987 -142167468 + AluSq SINE Alu 1 313 0 266 182 26 26 chr12 1620325 1620402 -142166053 + (TA)n Simple_repeat Simple_repeat 1 77 0 5614 161 94 38 chr12 1620403 1621177 -142165278 + L1MCa LINE L1 117 847 -5693 2100 100 3 85 chr12 1621177 1621517 -142164938 + AluSx SINE Alu 1 312 0 5614 161 94 38 chr12 1621517 1622677 -142163778 + L1MCa LINE L1 847 2262 -4278 1395 74 26 0 chr12 1622677 1622867 -142163588 + AluSg/x SINE Alu 100 294 -16 391 188 0 0 chr12 1622867 1622936 -142163519 + L1MCa LINE L1 2582 2650 -3890 183 184 0 0 chr12 1623276 1623314 -142163141 + CT-rich Low_complexity Low_complexity 1 38 0 2467 53 0 0 chr12 1623391 1623695 -142162760 - AluY SINE Alu -6 305 2 777 256 58 5 chr12 1624119 1624429 -142162026 - LTR16C LTR ERVL 0 491 126 2377 74 3 3 chr12 1625192 1625504 -142160951 - AluSp SINE Alu -1 312 1 293 311 0 0 chr12 1625847 1625921 -142160534 - L2 LINE L2 -6 3307 3234 577 234 38 13 chr12 1626224 1626382 -142160073 - L1MA10 LINE L1 -2 6332 6171 381 305 198 59 chr12 1626639 1627281 -142159174 - L2 LINE L2 -481 2833 2103 * 411 303 135 19 chr12 1627229 1627437 -142159018 + L2 LINE L2 3022 3253 -19 223 306 128 37 chr12 1627607 1627719 -142158736 - L2 LINE L2 -246 3026 2926 2365 85 0 0 chr12 1627719 1628025 -142158430 + AluSp SINE Alu 1 306 -7 223 306 128 37 chr12 1628025 1628224 -142158231 - L2 LINE L2 -346 2926 2686 463 276 17 22 chr12 1628340 1628521 -142157934 + G-rich Low_complexity Low_complexity 1 180 0 22 0 0 0 chr12 1628899 1628921 -142157534 + AT_rich Low_complexity Low_complexity 1 22 0 247 133 22 78 chr12 1629302 1629392 -142157063 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 195 380 0 0 chr12 1630760 1630831 -142155624 + L2 LINE L2 3241 3311 -2 2059 114 7 0 chr12 1632355 1632653 -142153802 + AluSx SINE Alu 1 300 -12 2084 99 14 3 chr12 1633330 1633623 -142152832 + AluSx SINE Alu 1 296 -16 1933 128 7 3 chr12 1635839 1636267 -142150188 + AluSx SINE Alu 1 429 0 32 0 0 0 chr12 1637106 1637138 -142149317 + AT_rich Low_complexity Low_complexity 1 32 0 1697 124 4 26 chr12 1638080 1638353 -142148102 + AluJo SINE Alu 22 288 -24 2460 50 0 0 chr12 1639113 1639410 -142147045 + AluY SINE Alu 1 297 -14 823 132 0 0 chr12 1640251 1640372 -142146083 + FRAM SINE Alu 43 163 -13 685 182 25 0 chr12 1640378 1640499 -142145956 - FLAM_A SINE Alu -9 124 1 2357 62 3 19 chr12 1640952 1641261 -142145194 + AluSp SINE Alu 1 304 -9 1928 127 3 35 chr12 1643102 1643416 -142143039 + AluJb SINE Alu 1 304 -8 234 156 0 0 chr12 1643455 1643500 -142142955 + GA-rich Low_complexity Low_complexity 4 48 0 384 248 199 28 chr12 1643514 1643655 -142142800 + MIR SINE MIR 46 210 -52 307 41 41 0 chr12 1646178 1646227 -142140228 + (TA)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chr12 1648153 1648180 -142138275 + (CCG)n Simple_repeat Simple_repeat 2 28 0 201 288 25 25 chr12 1648193 1648311 -142138144 + C-rich Low_complexity Low_complexity 6 123 0 285 221 35 9 chr12 1648365 1648478 -142137977 + (CCG)n Simple_repeat Simple_repeat 3 118 0 39 50 0 0 chr12 1648479 1648539 -142137916 + GC_rich Low_complexity Low_complexity 1 60 0 25 95 0 0 chr12 1648786 1648860 -142137595 + GC_rich Low_complexity Low_complexity 1 74 0 310 276 23 11 chr12 1650881 1650968 -142135487 + MIR3 SINE MIR 106 193 -15 459 0 0 0 chr12 1651509 1651560 -142134895 + (TA)n Simple_repeat Simple_repeat 2 52 0 1969 113 0 17 chr12 1651617 1651918 -142134537 + AluSx SINE Alu 1 296 -16 199 253 88 66 chr12 1651930 1652021 -142134434 + L2 LINE L2 3180 3272 0 1504 171 23 7 chr12 1652271 1652558 -142133897 + L1MB2 LINE L1 5280 5558 -625 856 132 0 23 chr12 1652559 1652688 -142133767 + FLAM_C SINE Alu 1 126 -17 3348 158 14 11 chr12 1652689 1653252 -142133203 + L1MB2 LINE L1 5557 6121 -50 1080 66 7 0 chr12 1653252 1653388 -142133067 + AluSp SINE Alu 1 137 -176 2217 104 3 0 chr12 1653389 1653697 -142132758 + AluSp SINE Alu 4 312 -1 255 130 65 0 chr12 1653697 1653743 -142132712 + L1MB2 LINE L1 6121 6169 -2 226 275 0 62 chr12 1653976 1654056 -142132399 + MER94 DNA DNA 2 76 -58 1533 149 30 37 chr12 1654367 1654662 -142131793 + AluJo SINE Alu 1 293 -19 1701 144 0 14 chr12 1655110 1655387 -142131068 + AluJb SINE Alu 1 273 -39 530 233 83 79 chr12 1655703 1655931 -142130524 + MIR SINE MIR 34 262 0 2163 92 3 3 chr12 1656074 1656369 -142130086 + AluSg SINE Alu 1 295 -15 2154 105 0 0 chr12 1656593 1656887 -142129568 - AluSx SINE Alu -18 294 1 269 234 0 4 chr12 1656917 1657011 -142129444 - MER5A DNA MER1_type -2 187 57 575 327 31 13 chr12 1657251 1657477 -142128978 + MIR SINE MIR 7 236 -26 738 288 60 44 chr12 1657484 1657734 -142128721 - MIR SINE MIR -8 254 1 2171 150 35 8 chr12 1657809 1657894 -142128561 + L1MA5 LINE L1 5889 5970 -330 1778 134 3 3 chr12 1657894 1658177 -142128278 + AluJo SINE Alu 6 288 -24 2171 150 35 8 chr12 1658177 1658492 -142127963 + L1MA5 LINE L1 5970 6300 0 408 175 12 6 chr12 1658778 1658944 -142127511 + (TG)n Simple_repeat Simple_repeat 1 167 0 193 143 20 31 chr12 1658967 1659065 -142127390 + (TG)n Simple_repeat Simple_repeat 1 97 0 419 191 6 0 chr12 1659094 1659256 -142127199 + (TG)n Simple_repeat Simple_repeat 1 163 0 2132 95 3 0 chr12 1660633 1660918 -142125537 + AluSx SINE Alu 1 286 -26 234 81 0 0 chr12 1660920 1660957 -142125498 + (CTAA)n Simple_repeat Simple_repeat 3 39 0 2182 111 10 0 chr12 1661033 1661340 -142125115 + AluSg SINE Alu 1 310 0 2171 82 0 30 chr12 1661669 1661972 -142124483 - AluSx SINE Alu -18 294 1 1694 124 16 60 chr12 1663084 1663399 -142123056 - AluJb SINE Alu -11 301 1 1817 162 0 0 chr12 1663559 1663901 -142122554 - AluJo SINE Alu 0 312 1 454 171 36 45 chr12 1663997 1664108 -142122347 + L1ME3 LINE L1 6052 6161 -1 22 0 0 0 chr12 1664109 1664131 -142122324 + AT_rich Low_complexity Low_complexity 1 22 0 783 171 0 0 chr12 1664516 1664633 -142121822 + FLAM_C SINE Alu 1 117 -16 25 31 0 0 chr12 1664633 1664665 -142121790 + AT_rich Low_complexity Low_complexity 1 32 0 2437 69 0 0 chr12 1665086 1665390 -142121065 - AluY SINE Alu -7 304 1 343 284 90 45 chr12 1666584 1666718 -142119737 + L1ME LINE L1 5353 5492 -629 428 303 39 3 chr12 1666884 1667025 -142119430 - MIR3 SINE MIR -5 203 57 1788 139 7 3 chr12 1667246 1667533 -142118922 - AluJo SINE Alu -24 288 1 863 291 54 31 chr12 1667699 1668087 -142118368 - MLT1J2 LTR MaLR 0 450 54 214 293 48 85 chr12 1668727 1668915 -142117540 + L2 LINE L2 2613 2793 -521 257 109 22 0 chr12 1668986 1669032 -142117423 + CT-rich Low_complexity Low_complexity 2 48 0 996 159 63 11 chr12 1669826 1670015 -142116440 + MER3 DNA MER1_type 8 206 -3 231 311 14 14 chr12 1670116 1670190 -142116265 - MIR SINE MIR -3 259 186 26 0 0 0 chr12 1671298 1671324 -142115131 + AT_rich Low_complexity Low_complexity 1 26 0 1921 149 20 7 chr12 1671361 1671656 -142114799 + AluJb SINE Alu 13 311 -1 1896 146 7 10 chr12 1671853 1672148 -142114307 + AluJo SINE Alu 1 294 -18 832 250 51 90 chr12 1674039 1674527 -142111928 - L1ME3A LINE L1 0 6170 5702 1185 137 0 6 chr12 1674527 1674702 -142111753 - AluSc SINE Alu -4 305 132 2340 82 3 0 chr12 1674702 1674993 -142111462 - AluSc SINE Alu -13 296 5 259 393 159 0 chr12 1675086 1675287 -142111168 - L2 LINE L2 -665 2649 2417 1683 164 60 11 chr12 1675560 1675841 -142110614 - AluJo SINE Alu -17 295 1 1726 31 0 0 chr12 1676101 1676294 -142110161 - AluY SINE Alu -6 305 113 311 335 126 38 chr12 1676667 1676930 -142109525 - L2 LINE L2 -1 3312 3027 246 282 33 127 chr12 1677075 1677181 -142109274 - L2 LINE L2 -474 2840 2756 2624 61 0 0 chr12 1677181 1677491 -142108964 - AluY SINE Alu -1 310 1 246 282 33 127 chr12 1677491 1677565 -142108890 - L2 LINE L2 -558 2756 2677 2250 96 33 0 chr12 1678101 1678404 -142108051 + AluSq SINE Alu 1 313 0 503 282 140 5 chr12 1678454 1678656 -142107799 + MIR SINE MIR 37 262 0 2283 125 3 0 chr12 1679648 1679959 -142106496 - AluSx SINE Alu 0 312 1 1884 151 68 0 chr12 1679963 1680255 -142106200 - AluJo SINE Alu 0 312 1 2373 95 3 0 chr12 1680264 1680559 -142105896 - AluSp SINE Alu -17 296 1 2431 68 0 3 chr12 1680566 1680861 -142105594 - AluY SINE Alu -17 294 1 268 333 121 38 chr12 1680930 1681194 -142105261 - L2 LINE L2 -1 3312 3027 358 225 0 56 chr12 1681912 1682001 -142104454 + L2 LINE L2 3230 3313 0 1839 125 4 8 chr12 1682157 1682421 -142104034 - AluSx SINE Alu -16 296 34 218 192 19 0 chr12 1682906 1682958 -142103497 + (TG)n Simple_repeat Simple_repeat 1 53 0 21 36 0 0 chr12 1683038 1683066 -142103389 + AT_rich Low_complexity Low_complexity 1 28 0 219 184 41 20 chr12 1686536 1686585 -142099870 + L2 LINE L2 3221 3270 -2 892 108 0 8 chr12 1687928 1688048 -142098407 + FLAM_C SINE Alu 9 127 -16 663 307 179 12 chr12 1689238 1689557 -142096898 + L3 LINE CR1 1055 1426 -151 2659 157 50 18 chr12 1690159 1690494 -142095961 - L1MB7 LINE L1 -8 6176 5854 396 0 0 0 chr12 1690494 1690538 -142095917 + (TA)n Simple_repeat Simple_repeat 1 44 0 1796 161 10 30 chr12 1690539 1690699 -142095756 - AluJo SINE Alu -14 298 136 279 0 0 0 chr12 1690699 1690730 -142095725 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 2097 106 29 0 chr12 1690730 1691004 -142095451 - AluSq SINE Alu -31 282 1 1796 161 10 30 chr12 1691004 1691146 -142095309 - AluJo SINE Alu -174 138 1 2659 157 50 18 chr12 1691146 1691323 -142095132 - L1MB7 LINE L1 -329 5855 5645 843 115 56 133 chr12 1691324 1691452 -142095003 - Tigger1 DNA MER2_type -1 2417 2313 2243 84 0 45 chr12 1691452 1691760 -142094695 + AluSg SINE Alu 1 294 -16 843 115 56 133 chr12 1691760 1691865 -142094590 - Tigger1 DNA MER2_type -105 2313 2202 728 151 24 78 chr12 1691854 1691963 -142094492 - Tigger1 DNA MER2_type -2261 157 57 * 2157 96 7 0 chr12 1691963 1692273 -142094182 + AluY SINE Alu 1 312 0 728 151 24 78 chr12 1692273 1692328 -142094127 - Tigger1 DNA MER2_type -2361 57 1 922 187 87 48 chr12 1692332 1692562 -142093893 - L1MB7 LINE L1 -542 5642 5404 2473 55 3 3 chr12 1693124 1693433 -142093022 - AluY SINE Alu -2 309 1 328 321 36 0 chr12 1693433 1693545 -142092910 + L3 LINE CR1 1282 1397 -180 188 0 74 0 chr12 1694174 1694201 -142092254 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2382 94 0 3 chr12 1695099 1695398 -142091057 + AluSx SINE Alu 1 298 -14 2239 101 26 13 chr12 1695517 1695825 -142090630 + AluSx SINE Alu 1 312 0 2458 67 3 7 chr12 1697362 1697661 -142088794 - AluSp SINE Alu -14 299 2 180 77 0 0 chr12 1697683 1697709 -142088746 + (T)n Simple_repeat Simple_repeat 1 26 0 209 169 17 0 chr12 1697766 1697825 -142088630 + (TA)n Simple_repeat Simple_repeat 1 60 0 274 225 42 14 chr12 1698384 1698455 -142088000 + MIR SINE MIR 81 153 -109 192 77 0 0 chr12 1699224 1699250 -142087205 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 969 173 0 0 chr12 1699253 1699409 -142087046 - AluJo SINE Alu -30 282 127 23 54 0 0 chr12 1700297 1700334 -142086121 + AT_rich Low_complexity Low_complexity 1 37 0 2162 136 3 0 chr12 1702097 1702392 -142084063 + AluSx SINE Alu 1 296 -16 225 344 21 11 chr12 1702993 1703086 -142083369 - MIR3 SINE MIR -7 201 108 368 256 160 16 chr12 1703090 1703215 -142083240 - MER5A DNA MER1_type -33 156 14 393 70 0 0 chr12 1704099 1704156 -142082299 + (TG)n Simple_repeat Simple_repeat 2 58 0 183 80 0 0 chr12 1704908 1704933 -142081522 + (GA)n Simple_repeat Simple_repeat 2 26 0 503 255 26 39 chr12 1705215 1705368 -142081087 + L2 LINE L2 3163 3313 0 342 0 0 0 chr12 1705600 1705638 -142080817 + (TC)n Simple_repeat Simple_repeat 1 38 0 2402 75 0 19 chr12 1706396 1706714 -142079741 + AluSq SINE Alu 1 312 -1 21 36 0 0 chr12 1707056 1707084 -142079371 + AT_rich Low_complexity Low_complexity 1 28 0 2005 103 3 59 chr12 1707084 1707404 -142079051 + AluSx SINE Alu 1 302 -10 529 271 112 0 chr12 1707665 1707835 -142078620 - MIR SINE MIR 0 262 74 1746 157 13 41 chr12 1708054 1708199 -142078256 + AluJo SINE Alu 1 149 -163 1859 152 7 24 chr12 1708199 1708495 -142077960 + AluJo SINE Alu 1 291 -21 1746 157 13 41 chr12 1708495 1708667 -142077788 + AluJo SINE Alu 149 309 -3 780 211 0 0 chr12 1709797 1709925 -142076530 + FLAM_C SINE Alu 2 129 -14 323 257 9 55 chr12 1709928 1710037 -142076418 - MER5B DNA MER1_type -58 120 17 742 166 72 122 chr12 1710223 1710371 -142076084 + FAM SINE Alu 4 143 -168 2022 109 46 7 chr12 1710371 1710654 -142075801 - AluSg SINE Alu -16 294 1 742 166 72 122 chr12 1710654 1710686 -142075769 + FAM SINE Alu 143 175 0 1550 209 7 7 chr12 1711334 1711636 -142074819 - AluJo SINE Alu -10 302 1 331 136 0 17 chr12 1711646 1711705 -142074750 - FLAM SINE Alu 0 133 76 1776 174 3 33 chr12 1711934 1712233 -142074222 - AluJb SINE Alu -22 290 1 1622 121 128 12 chr12 1712473 1712730 -142073725 + AluSg SINE Alu 1 287 -23 318 288 116 14 chr12 1713176 1713322 -142073133 - MIR SINE MIR -65 197 37 20958 30 1 3 chr12 1713400 1716716 -142069739 + L1PA4 LINE L1 2838 6155 0 3538 147 49 12 chr12 1717652 1718326 -142068129 + L1MC2 LINE L1 5644 6342 -2 2187 120 0 13 chr12 1718337 1718646 -142067809 - AluSx SINE Alu -7 305 1 1712 173 67 6 chr12 1718646 1718992 -142067463 + L1MB4 LINE L1 5814 6180 0 1375 167 148 0 chr12 1719000 1719263 -142067192 + AluJo SINE Alu 1 302 0 2565 70 0 0 chr12 1719686 1719988 -142066467 - AluY SINE Alu -9 302 1 216 0 0 0 chr12 1720682 1720706 -142065749 + (A)n Simple_repeat Simple_repeat 1 24 0 871 173 0 0 chr12 1720711 1720844 -142065611 + FLAM_C SINE Alu 1 133 0 29 28 0 0 chr12 1720844 1720880 -142065575 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr12 1720955 1720998 -142065457 + AT_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chr12 1721342 1721365 -142065090 + (A)n Simple_repeat Simple_repeat 1 23 0 2416 96 0 3 chr12 1721570 1721883 -142064572 - AluSx SINE Alu 0 312 1 2208 109 13 13 chr12 1721915 1722227 -142064228 + AluSq SINE Alu 1 312 -1 28 29 0 0 chr12 1722826 1722861 -142063594 + AT_rich Low_complexity Low_complexity 1 35 0 293 325 87 16 chr12 1723136 1723262 -142063193 - L2 LINE L2 -201 3071 2937 241 310 118 68 chr12 1723303 1723745 -142062710 - L2 LINE L2 -763 2551 2088 221 321 0 18 chr12 1723707 1723763 -142062692 - MIR SINE MIR -120 88 34 * 2150 122 0 0 chr12 1723827 1724123 -142062332 + AluSq SINE Alu 1 296 -17 475 237 105 0 chr12 1724315 1724429 -142062026 + L2 LINE L2 3188 3313 0 294 284 25 0 chr12 1724622 1724703 -142061752 + L2 LINE L2 3225 3307 -6 2180 104 20 7 chr12 1724905 1725203 -142061252 + AluSq SINE Alu 1 302 -11 182 289 0 0 chr12 1725380 1725425 -142061030 + L2 LINE L2 3228 3272 0 1202 144 0 0 chr12 1725462 1725642 -142060813 + AluJb SINE Alu 129 308 -4 3136 154 35 53 chr12 1725661 1726044 -142060411 - L1MB3 LINE L1 -12 6171 5802 2246 98 0 3 chr12 1726044 1726340 -142060115 + AluSg SINE Alu 1 295 -15 3136 154 35 53 chr12 1726340 1726578 -142059877 - L1MB3 LINE L1 -381 5802 5561 259 122 0 0 chr12 1726580 1726621 -142059834 - L1MD1 LINE L1 -323 5919 5879 1729 123 27 61 chr12 1726651 1726977 -142059478 - AluSx SINE Alu 0 316 1 333 214 84 104 chr12 1727668 1727822 -142058633 + L2 LINE L2 1747 1897 -1417 1695 252 137 24 chr12 1727851 1728752 -142057703 + L2 LINE L2 2230 3239 -74 1517 129 182 116 chr12 1728753 1728809 -142057646 - MER4A LTR ERV1 0 664 613 2375 100 7 0 chr12 1728809 1729119 -142057336 + AluSx SINE Alu 1 312 0 1517 129 182 116 chr12 1729119 1729441 -142057014 - MER4A LTR ERV1 -51 613 261 533 174 10 10 chr12 1729441 1729539 -142056916 - MER4A LTR ERV1 -566 98 1 3185 104 76 17 chr12 1729551 1730022 -142056433 + MER1A DNA MER1_type 1 499 -30 304 236 14 42 chr12 1730023 1730095 -142056360 + L2 LINE L2 3243 3312 -1 245 271 75 56 chr12 1730231 1730338 -142056117 + L2 LINE L2 3122 3230 -42 1995 134 10 13 chr12 1730348 1730661 -142055794 + AluSx SINE Alu 1 312 0 662 296 69 9 chr12 1730689 1730922 -142055533 - MIR SINE MIR -6 256 10 372 226 0 0 chr12 1731722 1731810 -142054645 + L1ME1 LINE L1 6090 6184 0 265 304 0 33 chr12 1732401 1732493 -142053962 - L2 LINE L2 -6 3307 3219 2255 105 7 0 chr12 1732603 1732898 -142053557 - AluSp SINE Alu -14 299 3 731 118 2 2 chr12 1734159 1734276 -142052179 - LTR12 LTR ERV1 -132 582 170 295 264 11 0 chr12 1734276 1734367 -142052088 - LTR30 LTR ERV1 -79 643 552 1715 103 96 4 chr12 1734367 1734628 -142051827 - LTR12 LTR ERV1 -429 285 1 1000 145 6 12 chr12 1734628 1734785 -142051670 - pTR5 LTR ERV1 -1696 742 587 281 114 0 23 chr12 1734765 1734809 -142051646 + Harlequin LTR ERV1 5568 5610 -2789 * 26667 91 16 22 chr12 1734826 1738550 -142047905 + Harlequin LTR ERV1 1252 4952 -3447 829 129 188 8 chr12 1738537 1738793 -142047662 + Harlequin LTR ERV1 840 1141 -5755 * 5703 102 1 1 chr12 1738791 1739572 -142046883 + Harlequin LTR ERV1 7503 8283 -116 2162 120 3 6 chr12 1739552 1739876 -142046579 - HERV9 LTR ERV1 -8004 395 73 * 801 107 1 15 chr12 1739871 1739997 -142046458 - LTR12 LTR ERV1 -130 584 301 * 312 244 11 0 chr12 1739997 1740087 -142046368 - LTR30 LTR ERV1 -79 643 553 1248 112 122 5 chr12 1740088 1740285 -142046170 - LTR12 LTR ERV1 -429 285 66 31 26 0 0 chr12 1740561 1740599 -142045856 + AT_rich Low_complexity Low_complexity 1 38 0 2562 216 94 46 chr12 1740900 1741306 -142045149 + L1ME1 LINE L1 4319 4704 -1462 2306 98 3 0 chr12 1741306 1741601 -142044854 + AluSx SINE Alu 1 296 -16 2562 216 94 46 chr12 1741601 1742015 -142044440 + L1ME1 LINE L1 4704 5097 -1069 1048 185 106 97 chr12 1742015 1742356 -142044099 + MER2 DNA MER2_type 1 344 0 2562 216 94 46 chr12 1742356 1742552 -142043903 + L1ME1 LINE L1 5097 5282 -884 1462 177 39 45 chr12 1742552 1742863 -142043592 + AluJb SINE Alu 1 309 -3 2562 216 94 46 chr12 1742863 1743326 -142043129 + L1ME1 LINE L1 5282 5721 -445 842 208 13 0 chr12 1743326 1743480 -142042975 - FRAM SINE Alu -10 156 1 2562 216 94 46 chr12 1743480 1743725 -142042730 + L1ME1 LINE L1 5721 6161 -5 291 335 89 0 chr12 1744011 1744169 -142042286 - MIR SINE MIR -26 236 65 507 261 112 12 chr12 1744331 1744492 -142041963 - MIR SINE MIR -81 181 5 1636 127 156 0 chr12 1744672 1744955 -142041500 - MER46B DNA MER2_type -34 202 1 346 172 0 16 chr12 1744909 1744973 -142041482 + MER46A DNA MER2_type 99 161 -75 * 226 224 35 0 chr12 1746193 1746251 -142040204 + L1M4 LINE L1 4925 4984 -1162 208 241 0 0 chr12 1746251 1746309 -142040146 + A-rich Low_complexity Low_complexity 1 58 0 1015 208 20 15 chr12 1746316 1746518 -142039937 + AluJo SINE Alu 5 207 -105 243 0 0 0 chr12 1746578 1746605 -142039850 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1463 171 80 8 chr12 1746607 1746871 -142039584 - AluJb SINE Alu -29 283 1 349 278 130 60 chr12 1746916 1747269 -142039186 - L1ME4a LINE L1 -65 6056 5679 523 228 29 29 chr12 1747364 1747500 -142038955 - LTR49 LTR ERV1 -1 594 459 307 266 213 12 chr12 1747502 1747671 -142038784 + L1M4 LINE L1 5086 5288 -858 345 288 89 57 chr12 1747711 1748027 -142038428 + L1M4 LINE L1 5328 5653 -2155 315 207 413 0 chr12 1748051 1748172 -142038283 + MER112 DNA MER1_type 67 237 -23 2223 120 3 0 chr12 1748177 1748485 -142037970 - AluSx SINE Alu -3 309 1 372 181 32 76 chr12 1748511 1748681 -142037774 + L1M4 LINE L1 5658 5820 -301 392 189 14 0 chr12 1748688 1748762 -142037693 - MER116 DNA Mariner 0 80 6 1615 180 31 3 chr12 1748903 1749197 -142037258 + AluJb SINE Alu 1 302 -10 2058 104 10 7 chr12 1750657 1750824 -142035631 - AluSp SINE Alu -14 299 129 202 0 29 57 chr12 1750824 1750859 -142035596 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2058 104 10 7 chr12 1750859 1750988 -142035467 - AluSp SINE Alu -184 129 2 205 277 191 32 chr12 1751117 1751211 -142035244 - L2 LINE L2 -18 3254 3146 327 291 36 9 chr12 1751458 1751568 -142034887 + L1ME LINE L1 5496 5608 -513 1583 170 57 11 chr12 1751802 1752084 -142034371 + AluJb SINE Alu 1 295 -17 297 0 0 0 chr12 1752085 1752118 -142034337 + (CA)n Simple_repeat Simple_repeat 2 34 0 1727 194 0 6 chr12 1753628 1753942 -142032513 + AluJo SINE Alu 1 312 0 201 171 0 0 chr12 1754456 1754491 -142031964 + A-rich Low_complexity Low_complexity 1 35 0 2134 113 0 29 chr12 1754643 1754953 -142031502 - AluSq SINE Alu -12 301 1 770 183 34 57 chr12 1754956 1755131 -142031324 - AluJo SINE Alu -16 296 126 865 191 42 0 chr12 1755145 1755313 -142031142 + AluJb SINE Alu 137 311 -1 891 189 90 0 chr12 1755314 1755526 -142030929 + L1MC2 LINE L1 6111 6341 -3 1882 164 52 12 chr12 1755675 1756004 -142030451 - MER2 DNA MER2_type 0 344 3 848 272 37 16 chr12 1756062 1756305 -142030150 + MIR SINE MIR 5 252 -10 2272 87 19 16 chr12 1756492 1756804 -142029651 + AluSq SINE Alu 1 313 0 1008 209 0 71 chr12 1756985 1757148 -142029307 - MER58A DNA MER1_type -2198 222 80 2214 125 0 0 chr12 1757148 1757452 -142029003 - AluSq SINE Alu -9 304 1 1008 209 0 71 chr12 1757452 1757527 -142028928 - MER58A DNA MER1_type -2340 80 1 218 244 0 0 chr12 1759165 1759206 -142027249 + G-rich Low_complexity Low_complexity 1 41 0 186 43 0 0 chr12 1759220 1759243 -142027212 + (CCG)n Simple_repeat Simple_repeat 3 25 0 202 224 30 15 chr12 1759262 1759329 -142027126 + (CCG)n Simple_repeat Simple_repeat 1 68 0 2295 100 3 3 chr12 1760855 1761155 -142025300 + AluSx SINE Alu 1 300 -12 1151 126 6 0 chr12 1761968 1762127 -142024328 + FRAM SINE Alu 5 164 -2 867 158 47 0 chr12 1762182 1762309 -142024146 - FLAM_C SINE Alu 0 133 1 2598 51 0 3 chr12 1762938 1763249 -142023206 + AluY SINE Alu 1 310 -1 3531 198 61 35 chr12 1763725 1764133 -142022322 - L1ME2 LINE L1 -9 6155 5759 1822 183 0 0 chr12 1764133 1764439 -142022016 - AluJo SINE Alu -2 310 5 3531 198 61 35 chr12 1764439 1764876 -142021579 - L1ME2 LINE L1 -405 5759 5284 2186 138 0 0 chr12 1764876 1765181 -142021274 - AluSx SINE Alu -7 305 1 3531 198 61 35 chr12 1765181 1765213 -142021242 - L1ME2 LINE L1 -880 5284 5254 1682 149 67 0 chr12 1766281 1766570 -142019885 + AluSx SINE Alu 1 307 0 1931 141 0 20 chr12 1766575 1766874 -142019581 + AluJo SINE Alu 1 293 -19 1995 124 7 3 chr12 1766876 1767184 -142019271 + AluY SINE Alu 1 309 0 215 294 110 18 chr12 1767252 1767284 -142019171 + MER5B DNA MER1_type 34 62 -116 1913 125 69 0 chr12 1767284 1767573 -142018882 + AluJo SINE Alu 1 309 -3 215 294 110 18 chr12 1767573 1767649 -142018806 + MER5B DNA MER1_type 62 152 -26 675 198 0 95 chr12 1767673 1767751 -142018704 + MER45A DNA AcHobo 1 54 -1527 2210 117 0 3 chr12 1767751 1768059 -142018396 - AluSq SINE Alu -6 307 1 675 198 0 95 chr12 1768059 1768165 -142018290 + MER45A DNA AcHobo 54 168 -10 1156 247 8 8 chr12 1769211 1769462 -142016993 - MIR SINE MIR 0 262 12 1656 165 14 30 chr12 1769747 1770044 -142016411 + AluJo SINE Alu 1 292 -20 2274 94 3 0 chr12 1770146 1770434 -142016021 - AluSx SINE Alu -23 289 1 293 273 0 13 chr12 1770510 1770587 -142015868 + L2 LINE L2 3196 3271 -1 201 131 66 16 chr12 1770668 1770729 -142015726 + (TATAA)n Simple_repeat Simple_repeat 4 67 0 2342 99 0 0 chr12 1771056 1771359 -142015096 + AluSg SINE Alu 1 303 -7 312 278 196 21 chr12 1771881 1772075 -142014380 + L2 LINE L2 2593 2820 -494 462 85 0 0 chr12 1772266 1772325 -142014130 - Alu SINE Alu -18 292 234 347 241 23 0 chr12 1772467 1772554 -142013901 + L1ME LINE L1 24 112 -6007 2244 99 0 0 chr12 1772557 1772851 -142013604 + AluSg SINE Alu 1 294 -16 1586 188 51 10 chr12 1772855 1773147 -142013308 + AluJo SINE Alu 1 304 -8 303 273 0 26 chr12 1773262 1773339 -142013116 + L1ME LINE L1 442 516 -5603 493 247 133 95 chr12 1773404 1773609 -142012846 + L1ME LINE L1 830 1026 -5284 2308 102 3 0 chr12 1773609 1773903 -142012552 + AluSx SINE Alu 1 295 -17 493 247 133 95 chr12 1773903 1774360 -142012095 + L1ME LINE L1 1026 1580 -4730 428 226 147 49 chr12 1774496 1774700 -142011755 + L1ME LINE L1 5506 5729 -416 2268 103 7 10 chr12 1774729 1775039 -142011416 - AluY SINE Alu -2 309 1 1728 129 4 16 chr12 1775041 1775297 -142011158 - AluSx SINE Alu -16 296 44 2263 103 3 0 chr12 1775344 1775636 -142010819 + AluSx SINE Alu 3 295 -17 507 233 67 0 chr12 1775745 1775865 -142010590 - L2 LINE L2 -3 3310 3183 3132 183 45 24 chr12 1775904 1776593 -142009862 + L1M4 LINE L1 4613 5323 -855 2040 125 7 0 chr12 1776593 1776898 -142009557 + AluSg SINE Alu 1 307 0 3132 183 45 24 chr12 1776898 1777032 -142009423 + L1M4 LINE L1 5323 5453 -725 2463 92 0 0 chr12 1777032 1777336 -142009119 + AluSx SINE Alu 1 304 -8 442 264 0 9 chr12 1777419 1777529 -142008926 - MIR3 SINE MIR -19 189 81 2377 94 0 0 chr12 1777532 1777830 -142008625 + AluSx SINE Alu 1 298 -14 2589 60 0 0 chr12 1778026 1778328 -142008127 - AluY SINE Alu -9 302 1 1916 169 3 0 chr12 1778373 1778674 -142007781 - AluSx SINE Alu -10 302 1 368 294 8 8 chr12 1778690 1778816 -142007639 - L1MC5 LINE L1 -115 7846 7721 2183 116 7 7 chr12 1780328 1780630 -142005825 + AluSg SINE Alu 1 302 -8 1446 172 31 64 chr12 1781788 1781850 -142004605 - L1MB3 LINE L1 0 6183 6121 1444 165 12 93 chr12 1781850 1782172 -142004283 + AluJo SINE Alu 1 296 -16 1446 172 31 64 chr12 1782172 1782477 -142003978 - L1MB3 LINE L1 -62 6121 5817 1803 160 0 17 chr12 1782636 1782936 -142003519 - AluJb SINE Alu -17 295 1 478 134 56 14 chr12 1783086 1783228 -142003227 + (TCTCTG)n Simple_repeat Simple_repeat 3 150 0 746 265 78 99 chr12 1783866 1784306 -142002149 - L1MB3 LINE L1 -336 5785 5364 2445 80 3 3 chr12 1784306 1784606 -142001849 + AluSp SINE Alu 1 300 -13 746 265 78 99 chr12 1784606 1784714 -142001741 - L1MB3 LINE L1 -757 5364 5255 301 250 146 0 chr12 1784720 1784816 -142001639 - L1MB3 LINE L1 -906 5240 5131 393 231 112 28 chr12 1785242 1785385 -142001070 + L1MC4 LINE L1 6495 6649 -1393 2153 142 0 0 chr12 1785423 1785732 -142000723 - AluJb SINE Alu -3 309 1 2215 120 3 0 chr12 1785749 1786058 -142000397 - AluSg SINE Alu 0 310 1 862 171 13 4 chr12 1786429 1786663 -141999792 + CT-rich Low_complexity Low_complexity 1 236 0 263 352 16 31 chr12 1786663 1786791 -141999664 - L2 LINE L2 -1 3271 3146 294 241 0 25 chr12 1787565 1787644 -141998811 + G-rich Low_complexity Low_complexity 5 81 0 417 97 0 113 chr12 1787647 1787842 -141998613 + (AGGGGG)n Simple_repeat Simple_repeat 5 177 0 403 98 0 109 chr12 1790354 1790537 -141995918 + (AGGGGG)n Simple_repeat Simple_repeat 5 167 0 180 188 24 12 chr12 1790919 1791004 -141995451 + (CCCCG)n Simple_repeat Simple_repeat 5 90 0 496 222 139 0 chr12 1792018 1792162 -141994293 + MER69A DNA AcHobo 1 164 -13 2397 88 0 13 chr12 1793109 1793415 -141993040 + AluSx SINE Alu 1 302 -10 1012 172 0 0 chr12 1793788 1793945 -141992510 - FRAM SINE Alu -19 157 1 189 378 122 11 chr12 1794153 1794333 -141992122 - L3b LINE CR1 -8 1575 1376 2360 106 3 0 chr12 1794342 1794653 -141991802 + AluSx SINE Alu 1 312 0 717 174 0 9 chr12 1795066 1795181 -141991274 + FLAM_C SINE Alu 3 116 -27 642 298 22 6 chr12 1795181 1795362 -141991093 + L3 LINE CR1 1360 1543 -34 518 240 99 9 chr12 1797684 1797875 -141988580 - MIR SINE MIR -38 224 23 258 324 11 39 chr12 1799036 1799218 -141987237 + (CA)n Simple_repeat Simple_repeat 1 177 0 227 253 14 14 chr12 1799235 1799381 -141987074 + (CA)n Simple_repeat Simple_repeat 2 147 0 461 272 27 15 chr12 1799460 1799800 -141986655 + (CA)n Simple_repeat Simple_repeat 1 344 0 921 276 54 27 chr12 1800153 1800558 -141985897 + L1ME2 LINE L1 38 453 -5617 289 271 140 0 chr12 1800944 1801051 -141985404 + L1ME2 LINE L1 709 830 -5240 1360 289 55 25 chr12 1801052 1801689 -141984766 - MLT2F LTR ERVL -7 656 1 4573 147 53 95 chr12 1801733 1801766 -141984689 - L1MA9 LINE L1 -38 6274 6241 1820 159 39 9 chr12 1801766 1802100 -141984355 + MER2 DNA MER2_type 1 344 0 4573 147 53 95 chr12 1802100 1802244 -141984211 - L1MA9 LINE L1 -71 6241 6092 189 0 0 0 chr12 1802244 1802265 -141984190 + (CAATA)n Simple_repeat Simple_repeat 4 24 0 4573 147 53 95 chr12 1802265 1803285 -141983170 - L1MA9 LINE L1 -220 6092 5108 1592 294 61 40 chr12 1803285 1803901 -141982554 + L1ME2 LINE L1 884 1527 -4734 2012 131 3 38 chr12 1803901 1804214 -141982241 + AluJo SINE Alu 1 302 -10 1592 294 61 40 chr12 1804214 1804504 -141981951 + L1ME2 LINE L1 1527 1809 -4452 1375 269 61 3 chr12 1804506 1805024 -141981431 + L1ME2 LINE L1 3737 4301 -1779 2479 215 71 21 chr12 1807120 1808120 -141978335 + L1ME2 LINE L1 4291 5447 -651 1636 143 87 4 chr12 1808120 1808410 -141978045 + AluSx SINE Alu 1 312 0 2479 215 71 21 chr12 1808410 1809059 -141977396 + L1ME2 LINE L1 5447 6062 -36 2398 109 0 3 chr12 1809090 1809403 -141977052 + AluSx SINE Alu 1 312 0 430 307 102 6 chr12 1809820 1809986 -141976469 - MIR SINE MIR -78 184 3 250 133 67 0 chr12 1810235 1810248 -141976207 + MER3 DNA MER1_type 37 52 -157 525 192 151 7 chr12 1810248 1810394 -141976061 - MER3 DNA MER1_type -2 207 41 408 264 88 0 chr12 1810827 1810918 -141975537 + MIR SINE MIR 2 100 -162 508 252 29 58 chr12 1811058 1811264 -141975191 + MIR SINE MIR 22 221 -41 332 263 12 12 chr12 1811387 1811467 -141974988 + MER5B DNA MER1_type 4 83 -95 1143 140 19 56 chr12 1811468 1811682 -141974773 - AluJo SINE Alu -22 290 85 479 245 0 0 chr12 1811682 1811780 -141974675 + MER5B DNA MER1_type 76 173 -5 1312 238 93 12 chr12 1812637 1813066 -141973389 - MLT1C LTR MaLR 0 467 4 297 267 164 48 chr12 1813289 1813454 -141973001 + L2 LINE L2 2546 2729 -585 240 314 105 42 chr12 1814258 1814449 -141972006 - L2 LINE L2 -135 3137 2935 214 306 74 8 chr12 1815146 1815267 -141971188 + MIR3 SINE MIR 66 194 -14 802 288 40 81 chr12 1815543 1815837 -141970618 - L2 LINE L2 0 3313 3041 868 119 0 35 chr12 1815837 1815980 -141970475 + L1MB5 LINE L1 6029 6166 -8 802 288 40 81 chr12 1815980 1816115 -141970340 - L2 LINE L2 -272 3041 2902 2169 142 0 0 chr12 1816127 1816430 -141970025 + AluSx SINE Alu 1 303 -9 273 386 0 15 chr12 1816537 1816669 -141969786 - MIR3 SINE MIR -3 205 76 247 284 0 0 chr12 1817369 1817443 -141969012 + L1M4 LINE L1 4513 4586 -1560 809 289 9 9 chr12 1817831 1818056 -141968399 - MIR SINE MIR -32 230 6 358 248 30 20 chr12 1818218 1818319 -141968136 + L1MC5 LINE L1 3854 3955 -2191 861 137 0 8 chr12 1818321 1818445 -141968010 - FLAM_C SINE Alu -20 123 1 1082 330 63 35 chr12 1818504 1819152 -141967303 + L1MC5 LINE L1 4026 4719 -1427 288 53 0 0 chr12 1819152 1819190 -141967265 + (CA)n Simple_repeat Simple_repeat 2 39 0 1082 330 63 35 chr12 1819190 1819640 -141966815 + L1MC5 LINE L1 4719 5155 -991 1364 203 21 21 chr12 1819650 1819931 -141966524 + AluJb SINE Alu 1 281 -31 2072 47 115 36 chr12 1819932 1820210 -141966245 - AluY SINE Alu -11 300 1 1817 263 116 74 chr12 1820360 1821928 -141964527 + L1MC5 LINE L1 5270 6771 -1190 607 200 17 0 chr12 1821928 1822070 -141964385 + FLAM_C SINE Alu 2 145 0 1817 263 116 74 chr12 1822070 1822634 -141963821 + L1MC5 LINE L1 6771 7310 -651 954 145 0 6 chr12 1822634 1822793 -141963662 + L1MB8 LINE L1 6010 6167 -11 1817 263 116 74 chr12 1822793 1823150 -141963305 + L1MC5 LINE L1 7310 7895 -66 235 225 73 15 chr12 1823162 1823247 -141963208 - MER5A DNA MER1_type -29 149 56 911 188 72 19 chr12 1824857 1825065 -141961390 + MER20 DNA MER1_type 1 219 0 184 98 24 24 chr12 1825415 1825456 -141960999 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 191 395 37 9 chr12 1827155 1827264 -141959191 - MIR3 SINE MIR -32 176 65 598 253 25 31 chr12 1827715 1827877 -141958578 - MIR SINE MIR -56 206 46 181 259 35 17 chr12 1830286 1830344 -141956111 - MIR SINE MIR -68 140 82 290 372 0 0 chr12 1830653 1830747 -141955708 + MER5A DNA MER1_type 12 105 -84 379 313 44 52 chr12 1830753 1831002 -141955453 - MIR SINE MIR -14 248 2 470 371 108 0 chr12 1831135 1831348 -141955107 - MIR SINE MIR -19 243 8 219 36 0 0 chr12 1835382 1835410 -141951045 + (TG)n Simple_repeat Simple_repeat 2 29 0 282 345 0 0 chr12 1836755 1836839 -141949616 - MIR SINE MIR -51 211 128 313 292 152 64 chr12 1837952 1838123 -141948332 + MIR SINE MIR 77 262 0 195 373 0 0 chr12 1838316 1838375 -141948080 - L2 LINE L2 0 3313 3255 796 301 22 6 chr12 1838424 1838663 -141947792 - MIR SINE MIR -14 248 15 191 300 114 0 chr12 1842032 1842102 -141944353 + MIR3 SINE MIR 120 197 -11 294 340 28 9 chr12 1844458 1844564 -141941891 + MIR SINE MIR 89 196 -66 212 296 14 28 chr12 1844948 1845019 -141941436 - MIR SINE MIR -147 115 46 507 228 144 0 chr12 1846447 1846601 -141939854 + MER5A DNA MER1_type 1 180 -9 467 337 51 6 chr12 1846733 1846908 -141939547 - MIR SINE MIR -59 203 21 221 179 0 18 chr12 1850258 1850314 -141936141 + GA-rich Low_complexity Low_complexity 4 58 0 1657 24 0 28 chr12 1851821 1852032 -141934423 - SVA Other Other 0 1386 1182 10894 35 45 5 chr12 1852047 1853371 -141933084 - SVA Other Other -2 1384 9 362 316 37 42 chr12 1853481 1853671 -141932784 + MIR3 SINE MIR 20 208 0 488 265 0 6 chr12 1853907 1854088 -141932367 + (TG)n Simple_repeat Simple_repeat 1 180 0 209 169 0 92 chr12 1854290 1854355 -141932100 + GA-rich Low_complexity Low_complexity 1 59 0 260 336 91 0 chr12 1854918 1855028 -141931427 - L3b LINE CR1 -173 1410 1291 810 291 202 7 chr12 1855192 1855641 -141930814 - L2 LINE L2 -10 3303 2943 2117 139 0 7 chr12 1855641 1855950 -141930505 + AluSx SINE Alu 1 307 -5 810 291 202 7 chr12 1855950 1856289 -141930166 - L2 LINE L2 -370 2943 2354 588 139 0 10 chr12 1856292 1856393 -141930062 + LTR12 LTR ERV1 1 100 -614 185 237 0 0 chr12 1856602 1856640 -141929815 + MIR3 SINE MIR 167 204 -4 191 211 0 0 chr12 1857192 1857230 -141929225 + MIR SINE MIR 108 145 -63 940 214 5 0 chr12 1857246 1857442 -141929013 - MER3 DNA MER1_type -3 206 10 796 199 130 0 chr12 1857459 1857620 -141928835 + MER5A DNA MER1_type 5 186 -3 406 289 95 40 chr12 1858059 1858283 -141928172 + MIR SINE MIR 18 262 0 400 232 42 18 chr12 1860005 1860173 -141926282 + (CA)n Simple_repeat Simple_repeat 1 172 0 186 296 214 0 chr12 1861404 1861502 -141924953 + MIR3 SINE MIR 52 170 -38 1066 236 28 8 chr12 1862318 1862572 -141923883 - MER58 DNA MER1_type -2161 259 1 214 268 0 18 chr12 1863125 1863181 -141923274 + L2 LINE L2 3213 3267 -5 859 238 112 59 chr12 1863352 1863860 -141922595 - MLT1F LTR MaLR -6 536 2 603 224 55 12 chr12 1863990 1864155 -141922300 + MER5A DNA MER1_type 14 185 -4 543 265 127 12 chr12 1866018 1866271 -141920184 - MLT1J LTR MaLR -202 309 28 387 0 0 0 chr12 1866668 1866711 -141919744 + (CA)n Simple_repeat Simple_repeat 2 44 0 405 0 0 0 chr12 1868772 1868817 -141917638 + (CA)n Simple_repeat Simple_repeat 2 46 0 188 108 0 27 chr12 1869147 1869184 -141917271 + (TC)n Simple_repeat Simple_repeat 1 36 0 411 277 96 12 chr12 1874307 1874473 -141911982 + MIR SINE MIR 23 202 -60 371 231 44 0 chr12 1874721 1874812 -141911643 - MER94 DNA DNA -17 117 23 333 165 39 107 chr12 1875693 1875796 -141910659 + MER21B LTR ERV1 1 96 -767 1388 231 95 16 chr12 1875799 1876483 -141909972 + MER21B LTR ERV1 16 792 -71 224 224 79 26 chr12 1878544 1878620 -141907835 - MIR SINE MIR -81 181 102 354 209 70 12 chr12 1878664 1878750 -141907705 - MIR SINE MIR -59 203 113 285 233 27 14 chr12 1878782 1878855 -141907600 + MIR SINE MIR 176 249 -13 196 277 112 30 chr12 1879981 1880095 -141906360 - MIR SINE MIR -62 146 33 183 212 0 0 chr12 1880385 1880418 -141906037 + L3b LINE CR1 1483 1515 -68 2167 95 7 3 chr12 1880533 1880827 -141905628 - AluSg SINE Alu -15 295 1 314 233 0 36 chr12 1881249 1881348 -141905107 + MIR SINE MIR 99 191 -61 326 243 133 46 chr12 1881400 1881618 -141904837 + L1 LINE L1 4197 4433 -1713 547 60 0 0 chr12 1881638 1881705 -141904750 - Alu SINE Alu -239 71 5 882 135 6 94 chr12 1881720 1881890 -141904565 - Tigger3(Golem) DNA MER2_type -3 3026 2872 348 310 0 0 chr12 1886264 1886351 -141900104 - MIR3 SINE MIR -27 181 95 806 257 25 33 chr12 1886360 1886605 -141899850 + MIR SINE MIR 20 262 0 196 364 0 15 chr12 1886635 1886701 -141899754 - MIR3 SINE MIR -140 68 4 225 100 0 0 chr12 1887175 1887205 -141899250 + AluSq SINE Alu 2 31 -102 1581 118 4 0 chr12 1887205 1887433 -141899022 + AluSq SINE Alu 72 300 -13 851 134 104 30 chr12 1887696 1887899 -141898556 + AluSg/x SINE Alu 137 351 0 457 262 81 12 chr12 1888096 1888268 -141898187 - MER112 DNA MER1_type -11 249 66 22 0 0 0 chr12 1889341 1889363 -141897092 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 1890067 1890089 -141896366 + AT_rich Low_complexity Low_complexity 1 22 0 4327 171 64 15 chr12 1891213 1892367 -141894088 - L1MB7 LINE L1 -81 6103 4886 2041 94 87 3 chr12 1893171 1893459 -141892996 + AluSp SINE Alu 2 313 0 240 312 138 8 chr12 1893787 1893962 -141892493 + MIR3 SINE MIR 11 212 -50 1119 60 0 0 chr12 1895697 1895830 -141890625 + AluSc SINE Alu 1 133 -176 2233 77 0 0 chr12 1895830 1896103 -141890352 + AluSc SINE Alu 1 273 -36 24 0 0 0 chr12 1898422 1898446 -141888009 + AT_rich Low_complexity Low_complexity 1 24 0 469 255 64 19 chr12 1898459 1898616 -141887839 - MIR SINE MIR -50 212 49 371 273 142 34 chr12 1898768 1898944 -141887511 + MIR3 SINE MIR 14 208 0 1427 128 18 154 chr12 1899454 1899791 -141886664 - AluJo SINE Alu -11 291 1 575 108 151 58 chr12 1899799 1899938 -141886517 - MER106A DNA MER1_type -45 191 40 26 30 0 0 chr12 1900347 1900380 -141886075 + AT_rich Low_complexity Low_complexity 1 33 0 1727 121 4 19 chr12 1900655 1900912 -141885543 + AluJb SINE Alu 45 297 -15 1911 118 35 3 chr12 1900991 1901280 -141885175 + AluSq SINE Alu 1 298 -15 617 272 76 45 chr12 1902736 1903226 -141883229 + MER110 LTR ERV1 1 485 0 2453 75 7 3 chr12 1903538 1903845 -141882610 - AluSq SINE Alu -5 308 1 224 324 70 0 chr12 1904585 1904656 -141881799 + L2 LINE L2 2922 2997 -275 211 326 0 0 chr12 1904732 1904781 -141881674 + L2 LINE L2 3138 3186 -86 346 316 72 0 chr12 1905262 1905414 -141881041 - MIR SINE MIR 0 262 100 1673 244 85 25 chr12 1905759 1906242 -141880213 + L1ME3A LINE L1 5619 6130 -40 288 0 0 0 chr12 1906242 1906274 -141880181 + (TG)n Simple_repeat Simple_repeat 2 33 0 441 290 8 30 chr12 1906644 1906775 -141879680 - MIR3 SINE MIR -36 172 45 2047 143 0 3 chr12 1906843 1907137 -141879318 - AluJo SINE Alu -19 293 1 429 214 53 46 chr12 1907338 1907469 -141878986 - MIR SINE MIR -8 254 123 230 233 20 42 chr12 1907558 1907645 -141878810 - MER5A DNA MER1_type 0 189 87 290 312 58 7 chr12 1908049 1908187 -141878268 + MIR SINE MIR 118 262 0 39 60 0 0 chr12 1908474 1908541 -141877914 + AT_rich Low_complexity Low_complexity 1 67 0 944 306 44 26 chr12 1908629 1909100 -141877355 - L2 LINE L2 -234 3038 2553 3905 175 29 7 chr12 1909250 1909591 -141876864 + L1MB8 LINE L1 5431 5763 -415 2397 184 65 50 chr12 1909591 1910133 -141876322 - MER44D DNA MER2_type 0 605 1 3905 175 29 7 chr12 1910133 1910511 -141875944 + L1MB8 LINE L1 5763 6166 -12 38 61 0 0 chr12 1910644 1910710 -141875745 + AT_rich Low_complexity Low_complexity 1 66 0 235 0 57 0 chr12 1910768 1910803 -141875652 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2046 121 0 4 chr12 1910807 1911088 -141875367 - AluSg SINE Alu -30 280 1 236 305 46 22 chr12 1911120 1911209 -141875246 - MER5A DNA MER1_type -32 146 50 274 294 124 41 chr12 1911810 1912000 -141874455 + MIR SINE MIR 3 209 -53 330 305 12 0 chr12 1912364 1912446 -141874009 + MIR3 SINE MIR 122 204 -4 1141 256 150 34 chr12 1913809 1914363 -141872092 + L2 LINE L2 2290 2907 -407 26 23 0 23 chr12 1914363 1914383 -141872072 + AT_rich Low_complexity Low_complexity 1 20 -23 2243 100 3 0 chr12 1914383 1914672 -141871783 + AluSx SINE Alu 1 290 -22 26 23 0 23 chr12 1914672 1914695 -141871760 + AT_rich Low_complexity Low_complexity 20 43 0 305 221 0 29 chr12 1914774 1914842 -141871613 + L2 LINE L2 2913 2978 -335 451 268 121 17 chr12 1914860 1915091 -141871364 + MER112 DNA MER1_type 6 260 0 2103 116 7 7 chr12 1915457 1915751 -141870704 + AluSc SINE Alu 1 294 -15 1839 106 76 0 chr12 1915819 1916083 -141870372 + AluSx SINE Alu 1 284 -28 474 65 0 0 chr12 1916083 1916145 -141870310 + (TAG)n Simple_repeat Simple_repeat 1 62 0 320 270 41 56 chr12 1916633 1916829 -141869626 + L1ME4a LINE L1 5772 5964 -157 242 295 90 0 chr12 1917067 1917145 -141869310 - MIR SINE MIR -54 208 124 21 0 0 0 chr12 1917983 1918004 -141868451 + AT_rich Low_complexity Low_complexity 1 21 0 221 266 210 42 chr12 1918059 1918202 -141868253 - MIR SINE MIR -10 252 86 963 176 6 17 chr12 1918435 1918604 -141867851 + AluSg/x SINE Alu 135 303 -7 2057 93 31 71 chr12 1918604 1918926 -141867529 + AluSc SINE Alu 1 309 0 1636 162 7 48 chr12 1919016 1919325 -141867130 + AluJo SINE Alu 4 299 -13 298 309 96 24 chr12 1919823 1920166 -141866289 + L1M4 LINE L1 4065 4435 -1711 511 234 66 51 chr12 1920173 1920247 -141866208 + L1M4 LINE L1 4245 4316 -1830 1722 168 0 36 chr12 1920247 1920556 -141865899 - AluJo SINE Alu -14 298 1 511 234 66 51 chr12 1920556 1920737 -141865718 + L1M4 LINE L1 4316 4504 -1642 1247 193 23 19 chr12 1920741 1921000 -141865455 + AluJo SINE Alu 43 302 -10 850 196 164 32 chr12 1921000 1921311 -141865144 + L1M4 LINE L1 4495 4846 -1300 609 161 153 0 chr12 1921324 1921461 -141864994 + MER21A LTR ERV1 1 158 -773 2993 150 38 32 chr12 1921552 1922105 -141864350 + MER21A LTR ERV1 376 931 0 689 184 6 81 chr12 1922107 1922281 -141864174 + L1M4 LINE L1 4859 5019 -1127 2554 65 0 0 chr12 1922285 1922593 -141863862 + AluY SINE Alu 1 308 -3 1263 257 31 38 chr12 1922593 1923258 -141863197 + L1M4b LINE L1 1550 2307 -4652 1805 219 65 80 chr12 1923409 1923743 -141862712 - L1MEc LINE L1 -3167 3048 2710 182 37 37 0 chr12 1923743 1923770 -141862685 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1805 219 65 80 chr12 1923770 1923798 -141862657 - L1MEc LINE L1 -3505 2710 2683 1571 202 3 21 chr12 1923798 1924080 -141862375 - AluJo SINE Alu -30 282 6 1805 219 65 80 chr12 1924080 1924319 -141862136 - L1MEc LINE L1 -3532 2683 2495 1785 130 123 0 chr12 1924319 1924595 -141861860 - AluSx SINE Alu -2 310 1 1805 219 65 80 chr12 1924595 1924784 -141861671 - L1MEc LINE L1 -3720 2495 2305 4976 152 6 4 chr12 1924888 1925711 -141860744 + HSMAR2 DNA Mariner 1 825 -477 2162 104 53 20 chr12 1925708 1926064 -141860391 + HSMAR2 DNA Mariner 934 1301 -1 * 1191 137 0 6 chr12 1926196 1926371 -141860084 + AluSx SINE Alu 1 174 -138 2214 102 7 0 chr12 1926429 1926734 -141859721 + AluY SINE Alu 1 307 -4 21 57 0 0 chr12 1926948 1926983 -141859472 + AT_rich Low_complexity Low_complexity 1 35 0 1404 172 62 17 chr12 1927147 1927437 -141859018 - AluJo SINE Alu -7 305 3 575 108 0 0 chr12 1927499 1927582 -141858873 - Alu SINE Alu -8 303 221 808 165 0 0 chr12 1927590 1927723 -141858732 - AluSq/x SINE Alu -179 133 1 1873 142 77 19 chr12 1927978 1928303 -141858152 - MER2 DNA MER2_type 0 344 1 1772 157 17 7 chr12 1928440 1928739 -141857716 + AluJo SINE Alu 1 302 -10 785 323 35 25 chr12 1929376 1929775 -141856680 + L2 LINE L2 2467 2869 -445 365 295 162 26 chr12 1929845 1930116 -141856339 + L2 LINE L2 2988 3295 -18 1977 184 24 8 chr12 1930205 1930586 -141855869 + MLT1B LTR MaLR 4 390 0 2203 94 0 7 chr12 1930716 1931014 -141855441 - AluSx SINE Alu -16 296 1 1178 206 81 31 chr12 1931104 1931425 -141855030 - MER58B DNA MER1_type -1 340 4 1119 315 109 24 chr12 1932338 1932887 -141853568 - L3 LINE CR1 -442 1135 540 189 319 56 14 chr12 1932945 1933017 -141853438 - L3 LINE CR1 -1150 427 353 192 329 13 13 chr12 1934610 1934689 -141851766 + L2 LINE L2 3142 3220 -93 235 236 106 24 chr12 1935219 1935342 -141851113 - MIR3 SINE MIR -72 136 4 306 298 40 40 chr12 1936105 1936256 -141850199 - MER5B DNA MER1_type -27 151 1 500 221 134 87 chr12 1938426 1938828 -141847627 + MLT1J LTR MaLR 78 498 -13 269 277 170 11 chr12 1939649 1939920 -141846535 + LTR16A LTR ERVL 130 443 -7 218 122 41 41 chr12 1940135 1940184 -141846271 + L2 LINE L2 2924 2972 -300 303 301 45 38 chr12 1940299 1940432 -141846023 + L2 LINE L2 3136 3269 -3 204 359 65 0 chr12 1940465 1940557 -141845898 + L3b LINE CR1 1258 1355 -228 374 260 103 63 chr12 1944835 1945185 -141841270 + L1ME LINE L1 600 963 -5156 699 310 42 40 chr12 1945257 1945825 -141840630 + L1ME LINE L1 1098 1666 -4463 21 0 0 0 chr12 1945996 1946017 -141840438 + AT_rich Low_complexity Low_complexity 1 21 0 625 176 17 34 chr12 1946017 1946136 -141840319 - FLAM_A SINE Alu -14 128 12 17781 163 25 23 chr12 1946366 1949781 -141836674 + L1MA4A LINE L1 7 3414 -3591 1797 117 0 11 chr12 1949781 1950045 -141836410 + AluSg1 SINE Alu 26 286 -23 17781 163 25 23 chr12 1950045 1952166 -141834289 + L1MA4A LINE L1 3414 5529 -1476 1435 191 7 24 chr12 1952166 1952459 -141833996 - AluJo SINE Alu -24 288 1 17781 163 25 23 chr12 1952459 1952909 -141833546 + L1MA4A LINE L1 5529 5977 -1028 207 0 0 0 chr12 1952909 1952932 -141833523 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 17781 163 25 23 chr12 1952932 1953127 -141833328 + L1MA4A LINE L1 5977 6170 -835 441 0 0 0 chr12 1953127 1953176 -141833279 + (CA)n Simple_repeat Simple_repeat 2 50 0 17781 163 25 23 chr12 1953176 1953566 -141832889 + L1MA4A LINE L1 6170 6608 -397 511 115 13 0 chr12 1953570 1953648 -141832807 + AluJ/FLAM SINE Alu 2 80 -232 2636 119 15 10 chr12 1953648 1954052 -141832403 + L1MA4A LINE L1 6599 7004 -1 477 289 71 16 chr12 1954054 1954307 -141832148 + L1ME LINE L1 2093 2359 -3770 670 279 32 42 chr12 1954312 1954720 -141831735 + L1ME LINE L1 2548 2951 -3178 * 1079 179 94 69 chr12 1954709 1954894 -141831561 + L1MB3 LINE L1 5101 5280 -903 207 0 0 0 chr12 1954894 1954917 -141831538 + (CAA)n Simple_repeat Simple_repeat 1 23 0 1079 179 94 69 chr12 1954917 1955164 -141831291 + L1MB3 LINE L1 5280 5532 -651 240 35 0 0 chr12 1955198 1955227 -141831228 + (TG)n Simple_repeat Simple_repeat 2 30 0 2114 144 22 27 chr12 1955237 1955640 -141830815 + L1MB3 LINE L1 5781 6181 -2 1326 286 78 14 chr12 1955665 1956497 -141829958 + L1ME LINE L1 2943 3827 -2302 906 272 22 31 chr12 1956506 1956658 -141829797 + L1ME LINE L1 5303 5455 -690 1743 155 14 30 chr12 1956658 1956955 -141829500 - AluJo SINE Alu -20 292 1 906 272 22 31 chr12 1956955 1957125 -141829330 + L1ME LINE L1 5455 5622 -523 15839 151 11 11 chr12 1957130 1961045 -141825410 + L1MA3 LINE L1 2393 6305 0 2735 101 24 13 chr12 1961045 1961499 -141824956 + L1MB5 LINE L1 1999 2457 -3927 * 6164 220 40 5 chr12 1961487 1963016 -141823439 + L1MB5 LINE L1 3975 5557 -825 201 309 18 0 chr12 1963159 1963214 -141823241 + L3 LINE CR1 1265 1320 -257 222 37 0 0 chr12 1963747 1963774 -141822681 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 2334 32 0 11 chr12 1965695 1966012 -141820443 - AluY SINE Alu 0 316 3 204 317 173 0 chr12 1966228 1966332 -141820123 + L2 LINE L2 3151 3272 0 645 236 28 0 chr12 1966534 1966678 -141819777 + L1MC1 LINE L1 5583 5730 -444 1762 176 176 2 chr12 1966684 1967082 -141819373 + L1MC1 LINE L1 5865 6331 -2 2352 184 14 0 chr12 1967098 1967538 -141818917 + L1MB5 LINE L1 5957 6402 -8 2014 96 24 3 chr12 1967542 1967834 -141818621 - AluSc SINE Alu -10 299 2 230 295 259 14 chr12 1967913 1968052 -141818403 + MIR3 SINE MIR 34 206 -2 310 270 36 36 chr12 1969899 1970036 -141816419 - MIR3 SINE MIR -68 140 4 293 267 168 0 chr12 1970274 1970375 -141816080 + MIR SINE MIR 25 142 -120 344 272 61 0 chr12 1971196 1971310 -141815145 + MIR3 SINE MIR 71 191 -17 257 358 0 8 chr12 1971474 1971608 -141814847 + (CA)n Simple_repeat Simple_repeat 2 134 0 206 207 17 0 chr12 1971622 1971680 -141814775 + (CA)n Simple_repeat Simple_repeat 1 59 0 199 225 0 0 chr12 1972374 1972414 -141814041 - L2 LINE L2 -6 3307 3268 188 314 89 8 chr12 1972522 1972646 -141813809 - L2 LINE L2 -221 3051 2918 349 161 0 0 chr12 1972799 1972855 -141813600 + MER91B DNA MER1_type 2 57 -133 581 272 38 5 chr12 1973632 1973816 -141812639 + MIR SINE MIR 39 228 -34 3606 246 73 23 chr12 1975650 1976704 -141809751 + MER69 DNA AcHobo 10 1116 -1410 526 231 12 99 chr12 1976711 1976863 -141809592 + MER69 DNA AcHobo 2276 2401 -125 2289 199 7 32 chr12 1976863 1977400 -141809055 - L1MB3 LINE L1 -2 6181 5658 526 231 12 99 chr12 1977400 1977490 -141808965 + MER69 DNA AcHobo 2401 2497 -29 565 246 55 27 chr12 1977815 1978035 -141808420 + L2 LINE L2 2592 2817 -497 256 196 0 0 chr12 1978050 1978106 -141808349 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978144 1978200 -141808255 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978238 1978294 -141808161 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978332 1978388 -141808067 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978426 1978482 -141807973 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978520 1978576 -141807879 - MER69 DNA AcHobo -128 2398 2343 243 293 85 38 chr12 1978772 1978984 -141807471 - LTR33 LTR ERVL -7 514 293 429 254 0 42 chr12 1979232 1979374 -141807081 + L1MB7 LINE L1 6044 6179 -5 239 202 24 36 chr12 1979517 1979601 -141806854 + L2 LINE L2 3181 3263 -50 2155 161 68 68 chr12 1979863 1980367 -141806088 + L1MB3 LINE L1 5680 6183 0 2434 42 0 26 chr12 1980577 1980884 -141805571 - AluY SINE Alu -12 299 1 315 0 0 0 chr12 1981316 1981351 -141805104 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 390 21 0 0 chr12 1981350 1981397 -141805058 + (GA)n Simple_repeat Simple_repeat 1 47 0 464 225 92 35 chr12 1982173 1982346 -141804109 + MIR3 SINE MIR 15 197 -11 281 313 179 0 chr12 1982607 1982719 -141803736 + MIR SINE MIR 23 154 -108 568 257 145 36 chr12 1982721 1982997 -141803458 - MLT1L LTR MaLR 0 615 310 268 226 0 0 chr12 1983012 1983065 -141803390 - MLT1J LTR MaLR -348 163 111 238 284 15 0 chr12 1983184 1983251 -141803204 + MIR SINE MIR 176 243 -19 277 331 99 33 chr12 1983495 1983646 -141802809 + MIR3 SINE MIR 34 194 -14 211 211 0 0 chr12 1983738 1983776 -141802679 + (CA)n Simple_repeat Simple_repeat 1 38 0 201 398 37 19 chr12 1985275 1985436 -141801019 - MIR3 SINE MIR -8 200 37 264 261 185 11 chr12 1985747 1985839 -141800616 + MIR SINE MIR 63 170 -92 956 145 6 11 chr12 1986256 1986622 -141799833 + GA-rich Low_complexity Low_complexity 1 364 0 203 329 86 26 chr12 1986887 1987039 -141799416 - L2 LINE L2 -11 3261 3101 585 280 56 13 chr12 1987226 1987458 -141798997 - MLT1L LTR MaLR -14 601 360 195 250 78 16 chr12 1987459 1987523 -141798932 + MER5A DNA MER1_type 65 132 -57 983 139 36 0 chr12 1988015 1988181 -141798274 + AluJo SINE Alu 121 292 -20 583 243 46 92 chr12 1988231 1988535 -141797920 + L1ME3 LINE L1 5863 6152 -10 351 253 12 6 chr12 1989409 1989575 -141796880 + (TG)n Simple_repeat Simple_repeat 2 168 0 251 213 19 19 chr12 1989598 1989706 -141796749 + (TG)n Simple_repeat Simple_repeat 2 109 0 252 131 0 98 chr12 1989706 1989767 -141796688 + MER4-int LTR ERV1 1111 1165 -5433 262 368 56 7 chr12 1990081 1990225 -141796230 + MIR3 SINE MIR 47 197 -11 311 280 136 0 chr12 1990874 1990992 -141795463 - MER94 DNA DNA 0 134 1 21 0 0 0 chr12 1991344 1991365 -141795090 + AT_rich Low_complexity Low_complexity 1 21 0 186 191 0 0 chr12 1991710 1991757 -141794698 + (CA)n Simple_repeat Simple_repeat 1 47 0 335 323 179 12 chr12 1991761 1992018 -141794437 + L2 LINE L2 2914 3213 -59 191 189 27 0 chr12 1995887 1995924 -141790531 + L2 LINE L2 3214 3251 -21 1052 80 0 0 chr12 1996975 1997113 -141789342 - L1P LINE L1 -4166 1980 1843 1443 76 0 0 chr12 1997137 1997322 -141789133 - AluY SINE Alu -126 185 1 5475 135 28 35 chr12 1997325 1998308 -141788147 - L1P LINE L1 -4288 1858 883 24882 80 7 32 chr12 1998309 2002545 -141783910 + L1PA8A LINE L1 1987 6113 -18 1736 154 17 10 chr12 2003209 2003508 -141782947 - AluJo SINE Alu -4 308 8 777 91 0 27 chr12 2004375 2004485 -141781970 - FLAM_C SINE Alu -35 108 2 525 221 181 38 chr12 2004807 2005030 -141781425 + MIR SINE MIR 20 261 -1 1561 181 17 17 chr12 2007174 2007467 -141778988 - AluJo SINE Alu -19 293 1 2106 100 0 10 chr12 2007510 2007810 -141778645 + AluSq SINE Alu 1 297 -16 407 267 67 22 chr12 2008195 2008330 -141778125 + L2 LINE L2 3173 3313 0 1181 173 4 9 chr12 2008682 2008908 -141777547 - AluJo SINE Alu -2 310 86 261 0 0 0 chr12 2009678 2009707 -141776748 + (CTG)n Simple_repeat Simple_repeat 1 29 0 1752 174 6 3 chr12 2010421 2010732 -141775723 + AluJo SINE Alu 1 312 0 1696 160 24 3 chr12 2011378 2011671 -141774784 - AluJo SINE Alu -7 305 7 436 304 16 47 chr12 2013867 2014058 -141772397 + L1ME4a LINE L1 5935 6119 -2 409 232 50 0 chr12 2014457 2014556 -141771899 + L1 LINE L1 5002 5105 -1041 289 231 31 0 chr12 2014610 2014675 -141771780 + L1 LINE L1 5027 5093 -1053 345 211 40 0 chr12 2014675 2014751 -141771704 + L1 LINE L1 5027 5105 -1041 266 224 35 0 chr12 2014752 2014810 -141771645 + L1 LINE L1 5039 5098 -1048 * 314 237 40 0 chr12 2014805 2014881 -141771574 + L1 LINE L1 5027 5105 -1041 265 234 47 0 chr12 2014882 2014946 -141771509 + L1 LINE L1 5039 5105 -1041 * 310 237 40 0 chr12 2014935 2015011 -141771444 + L1 LINE L1 5027 5105 -1041 283 250 40 0 chr12 2015000 2015076 -141771379 + L1 LINE L1 5027 5105 -1041 * 326 224 40 0 chr12 2015065 2015141 -141771314 + L1 LINE L1 5027 5105 -1041 270 263 40 0 chr12 2015130 2015206 -141771249 + L1 LINE L1 5027 5105 -1041 * 248 276 40 0 chr12 2015195 2015271 -141771184 + L1 LINE L1 5027 5105 -1041 * 270 263 40 0 chr12 2015260 2015336 -141771119 + L1 LINE L1 5027 5105 -1041 * 276 246 31 0 chr12 2015325 2015390 -141771065 + L1 LINE L1 5027 5093 -1053 306 237 40 0 chr12 2015390 2015466 -141770989 + L1 LINE L1 5027 5105 -1041 239 226 38 0 chr12 2015467 2015520 -141770935 + L1 LINE L1 5039 5093 -1053 310 237 40 0 chr12 2015520 2015596 -141770859 + L1 LINE L1 5027 5105 -1041 6139 157 16 17 chr12 2015650 2016198 -141770257 + L1MA8 LINE L1 5027 5574 -717 2322 74 0 3 chr12 2016198 2016497 -141769958 + AluY SINE Alu 1 298 -13 6139 157 16 17 chr12 2016497 2017205 -141769250 + L1MA8 LINE L1 5574 6289 -2 323 349 60 13 chr12 2017224 2017373 -141769082 - L3 LINE CR1 -1 1576 1421 200 410 19 32 chr12 2018206 2018362 -141768093 - L2 LINE L2 -192 3080 2927 385 199 108 19 chr12 2018441 2018588 -141767867 + MER88 LTR ERVL 79 206 -258 * 1725 240 75 10 chr12 2018484 2018967 -141767488 - MER74B LTR ERVL -74 548 35 290 342 51 8 chr12 2019301 2019418 -141767037 - L2 LINE L2 -1 3271 3150 401 245 46 94 chr12 2019465 2019778 -141766677 - L1MC5 LINE L1 -393 7415 7219 * 806 271 151 41 chr12 2019747 2020437 -141766018 - L1MC4 LINE L1 -742 7219 6557 324 247 132 50 chr12 2020796 2020978 -141765477 - L1M4 LINE L1 -812 5334 5138 381 296 36 32 chr12 2020979 2021199 -141765256 - L1 LINE L1 -1032 5114 4894 295 295 6 12 chr12 2021611 2021777 -141764678 - L1 LINE L1 -1602 4544 4380 24 77 0 0 chr12 2021920 2021972 -141764483 + AT_rich Low_complexity Low_complexity 1 52 0 902 216 31 53 chr12 2022408 2022635 -141763820 + MER58A DNA MER1_type 2 223 -1 1848 112 56 11 chr12 2024603 2024889 -141761566 + AluSq SINE Alu 1 299 -14 23 0 0 0 chr12 2025262 2025285 -141761170 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr12 2026066 2026086 -141760369 + (T)n Simple_repeat Simple_repeat 1 20 0 314 322 17 0 chr12 2029020 2029135 -141757320 - MIR3 SINE MIR -5 203 87 351 326 0 0 chr12 2029302 2029400 -141757055 + GA-rich Low_complexity Low_complexity 3 100 0 304 314 198 16 chr12 2030550 2030671 -141755784 + L2 LINE L2 3129 3271 -1 274 204 23 11 chr12 2033356 2033444 -141753011 + GA-rich Low_complexity Low_complexity 4 92 0 2672 215 34 33 chr12 2035051 2035552 -141750903 - L1ME2 LINE L1 -9 6549 6050 2033 96 0 14 chr12 2035552 2035832 -141750623 - AluSx SINE Alu -34 278 3 2126 110 10 0 chr12 2035833 2036132 -141750323 - AluSx SINE Alu -10 302 1 2672 215 34 33 chr12 2036132 2036364 -141750091 - L1ME2 LINE L1 -507 6051 5813 1616 224 53 13 chr12 2036372 2036828 -141749627 + L1ME2 LINE L1 5761 6234 -322 840 202 40 16 chr12 2036854 2037106 -141749349 - L1ME2 LINE L1 -745 5795 5538 22 70 0 0 chr12 2037484 2037527 -141748928 + AT_rich Low_complexity Low_complexity 1 43 0 256 361 82 25 chr12 2038090 2038212 -141748243 + L2 LINE L2 3123 3251 -21 201 323 87 52 chr12 2038283 2038512 -141747943 - L2 LINE L2 -213 3059 2823 5132 230 70 36 chr12 2038683 2038728 -141747727 - L1ME2 LINE L1 -2364 4176 4134 2676 153 32 0 chr12 2038728 2039200 -141747255 - L1MB3 LINE L1 -2 6181 5695 5132 230 70 36 chr12 2039200 2042295 -141744160 - L1ME2 LINE L1 -2406 4134 954 2437 66 3 10 chr12 2042329 2042633 -141743822 - AluY SINE Alu -9 302 1 243 287 56 19 chr12 2042746 2042854 -141743601 - L1ME2 LINE L1 -5632 898 787 244 289 48 32 chr12 2043242 2043428 -141743027 - L1ME2 LINE L1 -5883 647 59 657 263 129 51 chr12 2043946 2044612 -141741843 - HAL1 LINE L1 0 2507 1790 1314 259 35 20 chr12 2044627 2044974 -141741481 - MLT1I LTR MaLR 0 409 58 355 209 143 9 chr12 2045123 2045228 -141741227 - HAL1 LINE L1 -2388 119 1 774 174 0 0 chr12 2045623 2045744 -141740711 + FLAM_A SINE Alu 1 121 -12 514 163 0 22 chr12 2045770 2045862 -141740593 + FRAM SINE Alu 61 150 -26 218 238 50 28 chr12 2045871 2045953 -141740502 + GA-rich Low_complexity Low_complexity 5 72 0 2038 135 7 13 chr12 2045953 2046257 -141740198 + AluSx SINE Alu 1 302 -10 324 351 107 19 chr12 2046597 2046802 -141739653 + MIR SINE MIR 28 250 -12 278 266 55 37 chr12 2047741 2047850 -141738605 + MIR SINE MIR 108 218 -44 1008 180 112 52 chr12 2047892 2048197 -141738258 - MER33 DNA MER1_type 0 324 2 21 36 0 0 chr12 2048346 2048374 -141738081 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr12 2050148 2050178 -141736277 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr12 2050271 2050306 -141736149 + AT_rich Low_complexity Low_complexity 1 35 0 180 302 60 9 chr12 2052297 2052413 -141734042 + L2 LINE L2 2148 2269 -1045 248 297 126 50 chr12 2052883 2053040 -141733415 + L2 LINE L2 2866 3040 -232 1264 128 33 83 chr12 2053040 2053282 -141733173 + MER30 DNA MER1_type 1 230 0 248 297 126 50 chr12 2053282 2053306 -141733149 + L2 LINE L2 3040 3061 -211 2133 88 27 27 chr12 2053767 2054061 -141732394 + AluSg SINE Alu 1 294 -16 1197 151 11 0 chr12 2055567 2055753 -141730702 + MER5A DNA MER1_type 1 188 -1 1763 125 14 61 chr12 2055950 2056268 -141730187 + AluJo SINE Alu 1 304 0 2349 84 0 0 chr12 2057275 2057574 -141728881 + AluSq SINE Alu 1 299 -14 249 225 42 42 chr12 2058149 2058220 -141728235 - MER5B DNA MER1_type -21 157 87 616 158 31 8 chr12 2058327 2058454 -141728001 - MER20 DNA MER1_type -89 130 1 4294 184 34 58 chr12 2061406 2062539 -141723916 + Charlie1a DNA MER1_type 1 1106 -349 491 110 7 208 chr12 2062560 2062648 -141723807 + Charlie1a DNA MER1_type 1333 1379 -1382 2382 83 0 0 chr12 2062648 2062948 -141723507 + AluSg SINE Alu 1 300 -10 491 110 7 208 chr12 2062948 2063013 -141723442 + Charlie1a DNA MER1_type 1379 1455 0 379 225 0 0 chr12 2063390 2063470 -141722985 + MER112 DNA MER1_type 172 251 -9 193 273 18 0 chr12 2064272 2064327 -141722128 + L2 LINE L2 2919 2974 -298 1262 153 0 5 chr12 2064622 2064855 -141721600 - AluJo SINE Alu 0 316 85 236 167 0 0 chr12 2064863 2064911 -141721544 - Alu SINE Alu -170 132 85 277 261 14 43 chr12 2064990 2065059 -141721396 + L2 LINE L2 3194 3260 -12 201 308 0 0 chr12 2066517 2066595 -141719860 + (TTA)n Simple_repeat Simple_repeat 2 79 0 196 246 18 70 chr12 2066669 2066726 -141719729 - L3 LINE CR1 -130 1447 1394 2369 93 0 7 chr12 2067387 2067697 -141718758 + AluSq SINE Alu 1 308 -5 212 213 363 0 chr12 2068019 2068099 -141718356 + MIR3 SINE MIR 93 201 -7 1146 176 40 0 chr12 2068829 2069028 -141717427 + MER58A DNA MER1_type 4 210 -14 224 323 46 92 chr12 2069070 2069200 -141717255 - L2 LINE L2 -22 3250 3127 690 293 59 36 chr12 2069594 2069847 -141716608 + MIR SINE MIR 1 259 -3 636 329 12 0 chr12 2070944 2071108 -141715347 - L2 LINE L2 0 3272 3107 200 200 67 0 chr12 2072017 2072062 -141714393 - MIR3 SINE MIR -54 154 107 415 240 143 19 chr12 2072111 2072265 -141714190 + MER5B DNA MER1_type 6 178 0 511 290 124 11 chr12 2072289 2072475 -141713980 + MIR SINE MIR 43 249 -13 280 229 49 0 chr12 2072500 2072561 -141713894 - MIR3 SINE MIR -132 76 13 349 244 0 191 chr12 2072715 2072883 -141713572 - L2 LINE L2 -1 3271 3136 2361 90 3 3 chr12 2072945 2073246 -141713209 - AluSq SINE Alu -8 305 5 580 217 101 0 chr12 2073320 2073458 -141712997 - MER5B DNA MER1_type -26 152 1 215 298 156 14 chr12 2073556 2073697 -141712758 - L2 LINE L2 -530 2784 2624 355 189 27 0 chr12 2074497 2074571 -141711884 - MER58 DNA MER1_type -106 109 34 1626 231 2 33 chr12 2074586 2075010 -141711445 + MER63 DNA MER1_type 649 1059 -2 1919 161 13 7 chr12 2075700 2076010 -141710445 + AluJo SINE Alu 1 312 0 620 153 42 7 chr12 2076010 2076154 -141710301 + GA-rich Low_complexity Low_complexity 4 152 0 212 242 15 0 chr12 2076527 2076593 -141709862 + CT-rich Low_complexity Low_complexity 1 67 0 773 284 28 24 chr12 2076688 2076942 -141709513 - MIR SINE MIR 0 262 8 545 302 174 12 chr12 2077265 2077507 -141708948 - L3 LINE CR1 -8 1569 1289 439 219 57 49 chr12 2077719 2077842 -141708613 - MIR SINE MIR -108 154 31 1010 207 137 43 chr12 2077853 2077918 -141708537 - MLT1A1 LTR MaLR -5 360 303 2353 89 0 3 chr12 2077918 2078211 -141708244 + AluSq SINE Alu 2 293 -20 1010 207 137 43 chr12 2078211 2078474 -141707981 - MLT1A1 LTR MaLR -62 303 1 3187 155 11 71 chr12 2078478 2078984 -141707471 + MER6A DNA MER2_type 1 461 -404 1805 142 68 4 chr12 2078984 2079265 -141707190 - AluJo SINE Alu -13 299 1 3187 155 11 71 chr12 2079265 2079402 -141707053 + MER6A DNA MER2_type 461 605 0 810 222 66 0 chr12 2079467 2079634 -141706821 + MER45A DNA AcHobo 1 178 0 211 111 0 28 chr12 2080442 2080478 -141705977 + MIR SINE MIR 21 55 -153 540 217 217 11 chr12 2080869 2081182 -141705273 - MLT1J LTR MaLR -23 488 82 472 264 78 9 chr12 2084895 2085044 -141701411 - MIR3 SINE MIR -48 160 1 502 235 136 128 chr12 2085151 2085402 -141701053 + MIR SINE MIR 10 262 0 196 186 0 102 chr12 2085595 2085654 -141700801 - MIR SINE MIR -63 145 93 1775 185 46 0 chr12 2085791 2086142 -141700313 - L1MB5 LINE L1 0 6174 5808 269 273 30 0 chr12 2088165 2088231 -141698224 + MER5B DNA MER1_type 17 84 -94 396 82 0 0 chr12 2088488 2088549 -141697906 + (TG)n Simple_repeat Simple_repeat 2 62 0 262 0 53 0 chr12 2090154 2090192 -141696263 + (CAA)n Simple_repeat Simple_repeat 2 41 0 307 351 153 4 chr12 2090297 2090565 -141695890 + L3 LINE CR1 954 1261 -316 693 234 85 51 chr12 2090571 2090806 -141695649 - MIR SINE MIR 0 262 20 430 364 30 4 chr12 2090820 2091051 -141695404 + L3 LINE CR1 1268 1504 -73 243 275 150 33 chr12 2091235 2091355 -141695100 - L2 LINE L2 0 3313 3180 22 94 0 0 chr12 2091630 2091694 -141694761 + GC_rich Low_complexity Low_complexity 1 64 0 654 337 53 16 chr12 2092203 2092446 -141694009 - L3b LINE CR1 -7 1576 1325 2111 113 24 0 chr12 2092993 2093284 -141693171 - AluSg SINE Alu -12 298 1 685 214 151 0 chr12 2094264 2094423 -141692032 + MER5A DNA MER1_type 7 189 0 491 335 77 24 chr12 2095990 2096277 -141690178 - L2 LINE L2 0 3272 2971 325 319 126 28 chr12 2097104 2097286 -141689169 + L3b LINE CR1 1249 1448 -135 285 370 0 10 chr12 2097380 2097480 -141688975 - MIR SINE MIR -116 146 48 2539 71 0 0 chr12 2097788 2098096 -141688359 - AluY SINE Alu -3 308 1 2143 216 18 11 chr12 2098416 2098986 -141687469 - Charlie2 DNA MER1_type -18 2844 2271 488 272 37 49 chr12 2099080 2099326 -141687129 - Charlie2 DNA MER1_type -2461 321 79 544 335 50 30 chr12 2099789 2100150 -141686305 - MLT1I LTR MaLR -2 407 40 2948 13 0 0 chr12 2100160 2100475 -141685980 - AluYb8 SINE Alu -3 315 1 255 325 18 74 chr12 2101891 2102054 -141684401 + MIR3 SINE MIR 17 170 -38 1184 251 147 16 chr12 2102277 2102720 -141683735 + MLT1D LTR MaLR 5 505 0 236 333 70 18 chr12 2102891 2103005 -141683450 - MIR SINE MIR -48 214 95 319 302 88 25 chr12 2103606 2103765 -141682690 + MIR SINE MIR 12 180 -82 192 279 0 0 chr12 2103771 2103814 -141682641 + L2 LINE L2 3270 3312 -1 612 296 104 5 chr12 2103819 2104039 -141682416 - MIR SINE MIR -1 261 20 248 87 22 43 chr12 2104110 2104156 -141682299 - L2 LINE L2 -8 3305 3261 650 274 46 13 chr12 2104213 2104775 -141681680 - MLT2F LTR ERVL 0 663 1 189 0 0 0 chr12 2105373 2105394 -141681061 + (GAA)n Simple_repeat Simple_repeat 1 21 0 282 304 101 9 chr12 2105471 2105688 -141680767 - L1ME4a LINE L1 -117 6004 5768 830 238 39 15 chr12 2105692 2105898 -141680557 + MIR SINE MIR 14 224 -38 321 268 39 1 chr12 2105906 2105993 -141680462 - L1ME4a LINE L1 -347 5774 5684 195 302 79 0 chr12 2106054 2106117 -141680338 - L2 LINE L2 -2 3270 3203 872 240 39 31 chr12 2106743 2106997 -141679458 + MIR SINE MIR 7 262 0 2509 227 125 43 chr12 2107422 2108486 -141677969 - L2 LINE L2 0 3313 2146 217 230 48 36 chr12 2109012 2109177 -141677278 + (CGCGG)n Simple_repeat Simple_repeat 2 168 0 27 29 0 0 chr12 2109204 2109238 -141677217 + GC_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr12 2109271 2109307 -141677148 + GC_rich Low_complexity Low_complexity 1 36 0 22 80 0 0 chr12 2109322 2109372 -141677083 + GC_rich Low_complexity Low_complexity 1 50 0 224 0 40 80 chr12 2109414 2109464 -141676991 + (CGGG)n Simple_repeat Simple_repeat 1 48 0 31 44 0 0 chr12 2109548 2109593 -141676862 + GC_rich Low_complexity Low_complexity 1 45 0 29 47 0 0 chr12 2109692 2109735 -141676720 + GC_rich Low_complexity Low_complexity 1 43 0 23 114 0 0 chr12 2110194 2110308 -141676147 + GC_rich Low_complexity Low_complexity 1 114 0 32 114 0 0 chr12 2110478 2110636 -141675819 + GC_rich Low_complexity Low_complexity 1 158 0 504 59 0 0 chr12 2112691 2112759 -141673696 + (TG)n Simple_repeat Simple_repeat 2 69 0 194 227 67 53 chr12 2113009 2113084 -141673371 + L3 LINE CR1 115 190 -1387 225 247 173 0 chr12 2116213 2116294 -141670161 - MIR3 SINE MIR -6 202 108 257 274 0 74 chr12 2117657 2117752 -141668703 + MIR SINE MIR 124 211 -51 689 288 56 13 chr12 2118734 2118967 -141667488 - MIR SINE MIR 0 262 20 597 176 5 0 chr12 2119442 2119644 -141666811 - L1MB7 LINE L1 -1 6183 5945 2250 102 3 0 chr12 2119674 2119969 -141666486 - AluSc SINE Alu -13 296 1 1395 162 30 0 chr12 2120191 2120467 -141665988 - L1MB5 LINE L1 -298 5876 5589 205 343 53 91 chr12 2121956 2122653 -141663802 - L2 LINE L2 -2 3270 2599 345 125 0 0 chr12 2123970 2124026 -141662429 + (TG)n Simple_repeat Simple_repeat 2 57 0 1654 181 52 0 chr12 2126338 2126625 -141659830 - AluJo SINE Alu -10 302 1 470 289 93 29 chr12 2126904 2127369 -141659086 - L1MEd LINE L1 -746 1744 1226 312 148 25 25 chr12 2127371 2127452 -141659003 + CT-rich Low_complexity Low_complexity 1 81 0 707 185 11 11 chr12 2127465 2127643 -141658812 + CT-rich Low_complexity Low_complexity 1 178 0 378 120 0 0 chr12 2127661 2127736 -141658719 + (CCTG)n Simple_repeat Simple_repeat 2 76 0 1516 183 18 35 chr12 2127761 2128046 -141658409 - AluJb SINE Alu -32 280 1 500 256 67 41 chr12 2128051 2128320 -141658135 - L1MEd LINE L1 -4940 1179 904 215 222 14 42 chr12 2128482 2128554 -141657901 + MIR SINE MIR 147 216 -46 206 116 23 0 chr12 2128690 2128733 -141657722 + (TA)n Simple_repeat Simple_repeat 1 44 0 1971 143 0 3 chr12 2128733 2129020 -141657435 - AluSx SINE Alu -26 286 1 180 339 0 0 chr12 2129348 2129410 -141657045 - L2 LINE L2 -3 3310 3249 210 336 96 39 chr12 2129437 2129541 -141656914 - L2 LINE L2 -9 3263 3154 533 209 32 25 chr12 2130370 2130528 -141655927 + MER117 DNA MER1_type 5 163 -34 261 364 98 17 chr12 2130829 2131002 -141655453 - MIR SINE MIR 0 262 76 550 294 0 7 chr12 2131943 2132086 -141654369 - MIR SINE MIR -118 144 3 256 131 16 16 chr12 2132988 2133049 -141653406 + CT-rich Low_complexity Low_complexity 4 64 0 328 308 9 9 chr12 2133982 2134089 -141652366 - MIR SINE MIR 0 262 156 283 310 26 9 chr12 2134177 2134293 -141652162 + L1MEd LINE L1 265 382 -5737 1944 160 31 46 chr12 2134449 2134520 -141651935 + L1MB1 LINE L1 5716 5787 -381 1849 187 19 21 chr12 2134520 2134895 -141651560 + MLT1A2 LTR MaLR 1 374 0 1944 160 31 46 chr12 2134895 2135222 -141651233 + L1MB1 LINE L1 5787 6118 -50 5122 27 0 3 chr12 2135222 2135815 -141650640 + L1PA4 LINE L1 5565 6155 0 1944 160 31 46 chr12 2135815 2135829 -141650626 + L1MB1 LINE L1 6118 6131 -37 1864 171 30 22 chr12 2135829 2136191 -141650264 - MLT1A1 LTR MaLR 0 365 1 1944 160 31 46 chr12 2136191 2136230 -141650225 + L1MB1 LINE L1 6131 6168 0 619 278 70 67 chr12 2136356 2136499 -141649956 + L1MEd LINE L1 678 819 -1671 2239 135 0 3 chr12 2136499 2136811 -141649644 + AluSx SINE Alu 1 311 -1 619 278 70 67 chr12 2136811 2136840 -141649615 + L1MEd LINE L1 819 846 -1644 2508 93 0 0 chr12 2136840 2137151 -141649304 + AluY SINE Alu 1 311 0 619 278 70 67 chr12 2137151 2137809 -141648646 + L1MEd LINE L1 846 1615 -875 2515 57 0 3 chr12 2137809 2138105 -141648350 + AluY SINE Alu 1 295 -16 619 278 70 67 chr12 2138105 2138185 -141648270 + L1MEd LINE L1 1615 1693 -797 350 255 142 21 chr12 2138429 2138570 -141647885 - MIR SINE MIR 0 262 105 265 290 21 21 chr12 2138666 2138759 -141647696 - MIR SINE MIR -156 106 14 182 218 182 0 chr12 2140061 2140116 -141646339 + MIR SINE MIR 84 148 -114 321 232 146 0 chr12 2140374 2140456 -141645999 - L2 LINE L2 -2 3311 3218 22 35 0 0 chr12 2140513 2140542 -141645913 + AT_rich Low_complexity Low_complexity 1 29 0 2672 291 52 23 chr12 2140704 2141685 -141644770 - L3 LINE CR1 -44 1533 525 665 343 141 36 chr12 2141775 2142771 -141643684 + L2 LINE L2 2159 3272 0 1200 238 63 58 chr12 2143032 2143460 -141642995 - MLT1J2 LTR MaLR 0 450 21 247 290 174 61 chr12 2143994 2144322 -141642133 + L3b LINE CR1 1211 1575 -8 258 323 56 71 chr12 2144448 2144646 -141641809 + MIR SINE MIR 24 218 -44 812 263 123 4 chr12 2144908 2145136 -141641319 + MIR SINE MIR 8 262 0 370 250 70 62 chr12 2145883 2146011 -141640444 - L2 LINE L2 -8 3264 3136 4084 140 62 35 chr12 2146137 2146273 -141640182 - L1MB2 LINE L1 -2 6169 6038 2263 97 17 0 chr12 2146273 2146573 -141639882 + AluY SINE Alu 1 305 -6 4084 140 62 35 chr12 2146573 2146831 -141639624 - L1MB2 LINE L1 -133 6038 5788 2525 91 0 0 chr12 2146831 2147138 -141639317 - AluSx SINE Alu -5 307 1 4084 140 62 35 chr12 2147138 2147571 -141638884 - L1MB2 LINE L1 -383 5788 5319 1853 182 173 18 chr12 2147831 2148265 -141638190 - MLT1D LTR MaLR 0 505 5 312 337 46 11 chr12 2148355 2148530 -141637925 + MIR3 SINE MIR 10 190 -18 466 269 17 8 chr12 2149247 2149366 -141637089 - MIR SINE MIR -90 172 53 182 288 206 0 chr12 2149863 2149936 -141636519 - L2 LINE L2 -21 3251 3164 185 148 148 19 chr12 2150596 2150650 -141635805 - MIR SINE MIR -94 168 108 595 235 25 24 chr12 2151053 2151226 -141635229 - MIR3 SINE MIR 0 208 34 297 271 127 25 chr12 2151540 2151658 -141634797 - MIR SINE MIR -132 130 1 28290 23 0 0 chr12 2152333 2156599 -141629856 + L1PA2 LINE L1 1908 6548 -1 195 42 0 0 chr12 2156689 2156713 -141629742 + (A)n Simple_repeat Simple_repeat 1 24 0 278 229 73 31 chr12 2156716 2156812 -141629643 + MIR SINE MIR 163 262 0 428 330 73 18 chr12 2157902 2158120 -141628335 + MIR SINE MIR 5 234 -28 2494 66 0 3 chr12 2158192 2158495 -141627960 + AluY SINE Alu 1 302 -9 330 288 128 40 chr12 2158663 2158788 -141627667 + MIR3 SINE MIR 15 150 -58 422 270 10 0 chr12 2158821 2158921 -141627534 - L2 LINE L2 -5 3308 3208 250 158 0 0 chr12 2159067 2159105 -141627350 - MIR SINE MIR -146 116 79 210 290 14 14 chr12 2159151 2159220 -141627235 + MER5B DNA MER1_type 43 111 -67 306 280 43 0 chr12 2160068 2160161 -141626294 - MIR SINE MIR -32 230 134 493 283 96 0 chr12 2161160 2161326 -141625129 + MER5A DNA MER1_type 6 187 -2 229 337 46 62 chr12 2161627 2162131 -141624324 + L2 LINE L2 1926 2421 -893 369 0 0 0 chr12 2162752 2162793 -141623662 + (CA)n Simple_repeat Simple_repeat 1 41 0 734 186 44 50 chr12 2162938 2163104 -141623351 - MIR SINE MIR 0 262 98 287 260 89 107 chr12 2163404 2163505 -141622950 - MIR SINE MIR -76 186 88 2539 73 0 0 chr12 2163505 2163808 -141622647 - AluY SINE Alu -8 303 1 287 260 89 107 chr12 2163808 2163875 -141622580 - MIR SINE MIR -174 88 21 228 241 107 88 chr12 2163886 2164045 -141622410 + MER5A DNA MER1_type 1 159 -19 205 332 37 32 chr12 2164110 2164300 -141622155 - L2 LINE L2 -1050 2264 2074 490 252 8 0 chr12 2164561 2164692 -141621763 - L1MB7 LINE L1 -12 6172 6041 369 0 0 0 chr12 2166205 2166246 -141620209 + (CA)n Simple_repeat Simple_repeat 2 42 0 627 240 137 11 chr12 2167668 2167843 -141618612 - MIR3 SINE MIR -3 205 9 188 254 18 36 chr12 2167885 2167940 -141618515 - L3 LINE CR1 -7 1570 1517 236 313 10 31 chr12 2168056 2168152 -141618303 - MIR SINE MIR -149 113 20 551 227 123 19 chr12 2168286 2168440 -141618015 - MIR SINE MIR -91 171 2 349 293 104 12 chr12 2169283 2169447 -141617008 + MIR SINE MIR 22 202 -6 2059 127 0 7 chr12 2169611 2169916 -141616539 - AluSx SINE Alu 0 303 1 283 272 136 8 chr12 2170106 2170231 -141616224 + MIR3 SINE MIR 38 178 -30 2228 84 20 17 chr12 2170233 2170531 -141615924 + AluY SINE Alu 1 299 -12 303 302 126 6 chr12 2170673 2170832 -141615623 + MER5B DNA MER1_type 1 178 0 526 252 22 7 chr12 2171113 2171248 -141615207 - MER5A DNA MER1_type -34 155 19 186 119 143 24 chr12 2172256 2172298 -141614157 + MIR3 SINE MIR 137 183 -25 717 229 75 87 chr12 2172353 2172886 -141613569 + MLT1G LTR MaLR 1 588 -2 258 204 0 0 chr12 2173886 2173935 -141612520 + MLT1K LTR MaLR 525 573 -15 263 299 0 13 chr12 2174110 2174187 -141612268 + MER117 DNA MER1_type 122 197 0 467 226 9 19 chr12 2176080 2176186 -141610269 + MER3 DNA MER1_type 1 105 -104 670 281 98 62 chr12 2177113 2177558 -141608897 + L2 LINE L2 2575 3040 -232 737 248 14 37 chr12 2178771 2178985 -141607470 + MER3 DNA MER1_type 1 209 0 10005 75 15 1 chr12 2182213 2184313 -141602142 + L1PA7 LINE L1 4034 6152 -2 194 281 225 0 chr12 2184556 2184645 -141601810 + L2 LINE L2 3200 3308 -5 335 310 71 7 chr12 2184758 2184913 -141601542 + L2 LINE L2 3149 3313 0 486 311 52 35 chr12 2185589 2185871 -141600584 + L1ME4a LINE L1 5635 5911 -210 1357 126 215 19 chr12 2185871 2186132 -141600323 - AluJb SINE Alu 0 312 1 1562 136 26 49 chr12 2186132 2186396 -141600059 - AluJb SINE Alu -15 297 40 486 311 52 35 chr12 2186396 2186407 -141600048 + L1ME4a LINE L1 5911 5920 -201 2279 96 0 63 chr12 2186407 2186739 -141599716 - AluSx SINE Alu -1 311 1 486 311 52 35 chr12 2186739 2186790 -141599665 + L1ME4a LINE L1 5920 5987 -134 866 283 14 5 chr12 2186834 2187053 -141599402 + MIR SINE MIR 2 222 -40 298 321 30 15 chr12 2187938 2188069 -141598386 + MIR SINE MIR 79 211 -51 507 357 33 0 chr12 2188777 2188959 -141597496 + MIR3 SINE MIR 21 208 0 4004 148 35 20 chr12 2189269 2189457 -141596998 + L1MB4 LINE L1 5415 5599 -581 2573 58 0 13 chr12 2189457 2189768 -141596687 + AluY SINE Alu 1 307 -4 4004 148 35 20 chr12 2189768 2190333 -141596122 + L1MB4 LINE L1 5599 6179 -1 305 294 64 9 chr12 2190833 2190942 -141595513 + L2 LINE L2 3155 3269 -3 13666 49 77 4 chr12 2191010 2192842 -141593613 - L1P LINE L1 -4179 1967 2 657 235 29 0 chr12 2192861 2192997 -141593458 - MIR SINE MIR -117 145 6 189 225 96 88 chr12 2193300 2193411 -141593044 + MER5B DNA MER1_type 21 122 -56 473 299 61 18 chr12 2193710 2193903 -141592552 + MIR SINE MIR 11 211 -51 728 203 101 0 chr12 2193948 2194086 -141592369 + AluJo SINE Alu 125 276 -36 1284 76 5 5 chr12 2195197 2195381 -141591074 + MSTB1 LTR MaLR 249 432 0 1592 206 28 30 chr12 2195536 2195934 -141590521 - MLT1C LTR MaLR 0 467 71 291 246 0 0 chr12 2196877 2196934 -141589521 + L2 LINE L2 3255 3311 -2 427 310 0 49 chr12 2196980 2197183 -141589272 + MIR3 SINE MIR 1 193 -15 485 285 112 75 chr12 2197227 2197719 -141588736 - L2 LINE L2 0 3313 2804 6441 137 37 44 chr12 2198725 2199496 -141586959 + Tigger3b DNA MER2_type 1 763 -2265 2293 86 27 0 chr12 2199496 2199788 -141586667 - AluSx SINE Alu -12 300 1 6441 137 37 44 chr12 2199788 2200254 -141586201 + Tigger3b DNA MER2_type 763 1230 -1 395 232 196 9 chr12 2200952 2201064 -141585391 - L2 LINE L2 -1 3312 3180 275 274 0 0 chr12 2202088 2202150 -141584305 - L2 LINE L2 0 3272 3211 396 278 61 28 chr12 2202408 2202588 -141583867 + MIR SINE MIR 77 262 0 192 246 53 18 chr12 2202821 2202878 -141583577 - L2 LINE L2 -243 3070 3012 1528 161 19 8 chr12 2205072 2205332 -141581123 - AluJo SINE Alu -16 296 34 365 229 0 62 chr12 2207688 2207784 -141578671 - MIR3 SINE MIR -11 197 108 928 263 92 4 chr12 2208721 2209002 -141577453 + MLT1J LTR MaLR 1 306 -205 23 33 0 0 chr12 2209199 2209229 -141577226 + AT_rich Low_complexity Low_complexity 1 30 0 1725 102 57 3 chr12 2209825 2210108 -141576347 - L1MB3 LINE L1 0 6183 5886 223 363 0 0 chr12 2211787 2211867 -141574588 - MIR3 SINE MIR -19 189 110 209 308 19 75 chr12 2211866 2211973 -141574482 + MIR3 SINE MIR 81 181 -27 * 312 279 21 21 chr12 2212513 2212653 -141573802 + L1ME3A LINE L1 5817 5956 -214 308 226 32 0 chr12 2212894 2212987 -141573468 + HAL1 LINE L1 45 140 -2367 2450 263 114 33 chr12 2213433 2213631 -141572824 + HAL1 LINE L1 154 335 -2172 881 141 49 5 chr12 2213631 2213815 -141572640 + L1MA8 LINE L1 6098 6289 -2 2450 263 114 33 chr12 2213815 2214817 -141571638 + HAL1 LINE L1 335 1451 -1056 1389 148 14 5 chr12 2214817 2215033 -141571422 + AluJb SINE Alu 1 218 -94 1058 217 84 49 chr12 2215047 2215393 -141571062 + HAL1 LINE L1 1427 1784 -723 606 268 156 22 chr12 2215417 2215731 -141570724 + HAL1 LINE L1 2129 2484 -23 1870 129 11 11 chr12 2215732 2216012 -141570443 + AluJb SINE Alu 1 280 -32 207 0 0 0 chr12 2216012 2216035 -141570420 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2370 99 6 6 chr12 2216111 2216424 -141570031 - AluSq SINE Alu 0 313 1 204 245 0 19 chr12 2216467 2216520 -141569935 - L2 LINE L2 0 3313 3262 239 188 146 0 chr12 2216807 2216855 -141569600 + L2 LINE L2 3213 3267 -5 2309 113 0 0 chr12 2217331 2217640 -141568815 - AluSg SINE Alu -1 309 1 215 132 0 26 chr12 2218563 2218601 -141567854 + MIR SINE MIR 117 153 -109 1758 95 4 22 chr12 2219510 2219742 -141566713 + AluSp SINE Alu 74 301 -12 453 326 18 2 chr12 2219797 2219980 -141566475 - MIR SINE MIR -63 145 5 475 217 217 31 chr12 2220839 2221000 -141565455 + MIR3 SINE MIR 3 193 -15 561 301 119 4 chr12 2221177 2221403 -141565052 + MIR SINE MIR 3 254 -8 190 255 92 78 chr12 2221962 2222103 -141564352 + MIR3 SINE MIR 6 148 -60 204 40 0 0 chr12 2222248 2222273 -141564182 + (TG)n Simple_repeat Simple_repeat 2 26 0 521 232 18 61 chr12 2223105 2223269 -141563186 + MIR SINE MIR 105 261 -1 180 320 301 4 chr12 2223579 2223838 -141562617 - L2 LINE L2 -1 3271 2936 1778 256 82 25 chr12 2223839 2224484 -141561971 - L1ME LINE L1 -5327 743 62 237 360 98 12 chr12 2224650 2224814 -141561641 - L2 LINE L2 -480 2834 2657 316 222 14 14 chr12 2224847 2224919 -141561536 + MIR3 SINE MIR 121 192 -16 316 302 16 62 chr12 2226510 2226639 -141559816 + L2 LINE L2 3132 3254 -18 211 314 29 0 chr12 2228020 2228090 -141558365 + MIR SINE MIR 63 134 -128 497 333 144 17 chr12 2228122 2228470 -141557985 - L2 LINE L2 -1 3312 2921 310 253 50 30 chr12 2228567 2228666 -141557789 + MLT1J1 LTR MaLR 346 446 0 402 217 12 0 chr12 2230254 2230337 -141556118 + MIR SINE MIR 92 175 -87 291 284 57 0 chr12 2230384 2230472 -141555983 + MIR SINE MIR 79 171 -91 1618 242 48 95 chr12 2230937 2231140 -141555315 - L1MC5 LINE L1 -27 7934 7723 2550 145 9 53 chr12 2231140 2231594 -141554861 - Tigger2a DNA MER2_type 0 434 1 1618 242 48 95 chr12 2231594 2232380 -141554075 - L1MC5 LINE L1 -238 7723 6991 777 258 146 59 chr12 2232398 2233012 -141553443 - L2 LINE L2 0 3313 2645 620 143 18 42 chr12 2233981 2234149 -141552306 + CT-rich Low_complexity Low_complexity 2 165 0 2043 130 30 0 chr12 2234157 2234457 -141551998 - AluSx SINE Alu -3 309 1 1966 156 0 0 chr12 2235300 2235605 -141550850 + AluSx SINE Alu 1 305 0 254 258 30 0 chr12 2235956 2236022 -141550433 - L3 LINE CR1 -2 1575 1508 318 320 37 29 chr12 2237169 2237411 -141549044 + MIR3 SINE MIR 1 246 -16 232 349 132 13 chr12 2237444 2237596 -141548859 - L3 LINE CR1 -584 993 824 181 286 5 0 chr12 2237707 2237775 -141548680 + MIR SINE MIR 74 143 -65 527 312 168 71 chr12 2237880 2238626 -141547829 + L3 LINE CR1 709 1526 -51 216 0 0 0 chr12 2238652 2238676 -141547779 + (A)n Simple_repeat Simple_repeat 1 24 0 233 173 30 29 chr12 2239468 2239535 -141546920 + MIR SINE MIR 103 167 -41 922 141 0 7 chr12 2239558 2239693 -141546762 - AluJo SINE Alu -178 134 1 194 271 0 0 chr12 2239720 2239768 -141546687 + MIR SINE MIR 183 230 -32 282 290 70 37 chr12 2239905 2240044 -141546411 - MER5B DNA MER1_type -30 159 6 415 270 51 15 chr12 2241145 2241282 -141545173 - L2 LINE L2 0 3313 3172 1833 161 37 45 chr12 2241913 2242293 -141544162 + MLT1B LTR MaLR 4 380 -10 612 279 132 5 chr12 2243209 2243428 -141543027 - MIR SINE MIR -13 249 3 341 309 71 42 chr12 2243641 2243809 -141542646 - MIR SINE MIR -44 218 46 2602 62 0 3 chr12 2245331 2245639 -141540816 + AluY SINE Alu 1 307 -4 284 348 127 17 chr12 2247029 2247210 -141539245 - L2 LINE L2 0 3272 3072 538 292 125 24 chr12 2247229 2247606 -141538849 - MLT1J2 LTR MaLR -23 427 13 363 278 0 0 chr12 2248034 2248210 -141538245 + (CA)n Simple_repeat Simple_repeat 2 177 0 411 272 0 0 chr12 2248241 2248421 -141538034 + (CA)n Simple_repeat Simple_repeat 1 180 0 498 256 0 0 chr12 2248435 2248615 -141537840 + (CA)n Simple_repeat Simple_repeat 1 180 0 270 340 38 0 chr12 2249127 2249233 -141537222 + MIR SINE MIR 120 229 -33 2038 154 0 0 chr12 2249693 2249998 -141536457 + AluJb SINE Alu 1 305 -7 333 282 194 31 chr12 2250192 2250486 -141535969 - L3 LINE CR1 -58 1519 1178 700 172 7 17 chr12 2250625 2250916 -141535539 + CT-rich Low_complexity Low_complexity 1 288 0 182 263 0 0 chr12 2250950 2250988 -141535467 - L3 LINE CR1 -613 964 927 337 262 149 42 chr12 2251850 2252018 -141534437 + MIR3 SINE MIR 23 208 0 277 279 38 77 chr12 2252334 2252517 -141533938 - MIR3 SINE MIR -7 201 26 359 272 29 110 chr12 2255611 2255759 -141530696 + L2 LINE L2 2826 2944 -369 2560 153 23 16 chr12 2255759 2256190 -141530265 + Tigger2a DNA MER2_type 1 434 0 359 272 29 110 chr12 2256190 2256313 -141530142 + L2 LINE L2 2944 3075 -238 467 234 18 0 chr12 2256316 2256427 -141530028 + AluJb SINE Alu 196 308 -4 472 192 242 28 chr12 2256472 2256654 -141529801 + L2 LINE L2 3093 3313 0 676 278 90 45 chr12 2256804 2256858 -141529597 - L2 LINE L2 -6 3307 3257 1230 126 36 50 chr12 2256858 2257080 -141529375 + MER20 DNA MER1_type 1 219 0 676 278 90 45 chr12 2257080 2257381 -141529074 - L2 LINE L2 -56 3257 2936 235 227 247 0 chr12 2258159 2258256 -141528199 - MLT1L LTR MaLR 0 615 495 264 287 282 5 chr12 2258285 2258487 -141527968 - MLT1L LTR MaLR -340 275 18 285 325 49 8 chr12 2258682 2258805 -141527650 - MIR3 SINE MIR -5 203 76 2508 13 0 0 chr12 2260570 2260873 -141525582 - L1PA2 LINE L1 -599 5556 5254 5238 22 10 0 chr12 2260875 2261471 -141524984 + L1PA2 LINE L1 5554 6155 0 287 297 124 22 chr12 2261917 2262102 -141524353 + L2 LINE L2 3008 3211 -102 1658 176 47 9 chr12 2262223 2262564 -141523891 - MLT1A1 LTR MaLR -2 363 10 536 328 33 6 chr12 2262926 2263106 -141523349 + MIR SINE MIR 20 204 -58 1952 146 0 35 chr12 2264048 2264364 -141522091 + AluJo SINE Alu 1 305 -7 198 349 121 0 chr12 2264646 2264712 -141521743 - L2 LINE L2 -10 3262 3189 225 196 22 0 chr12 2266506 2266552 -141519903 + GA-rich Low_complexity Low_complexity 2 48 0 2455 78 0 7 chr12 2268235 2268541 -141517914 - AluSq SINE Alu -9 304 1 349 376 8 0 chr12 2269242 2269359 -141517096 - L2 LINE L2 -19 3253 3136 181 244 12 85 chr12 2270669 2270751 -141515704 + MIR3 SINE MIR 95 170 -38 493 309 90 5 chr12 2270785 2270973 -141515482 + MIR SINE MIR 59 262 0 410 278 56 16 chr12 2270959 2271085 -141515370 - MIR SINE MIR -47 215 85 * 659 199 33 50 chr12 2273120 2273301 -141513154 + MER5B DNA MER1_type 1 178 0 2990 145 4 16 chr12 2273461 2273971 -141512484 + L1MB3 LINE L1 5679 6182 -1 250 240 125 42 chr12 2274269 2274365 -141512090 + MIR SINE MIR 31 134 -128 242 282 115 58 chr12 2274534 2274708 -141511747 + MIR3 SINE MIR 18 201 -7 306 276 114 16 chr12 2276773 2276896 -141509559 + MIR SINE MIR 109 243 -19 702 282 181 25 chr12 2277272 2277946 -141508509 - L2 LINE L2 0 3313 2539 876 283 62 58 chr12 2278063 2278664 -141507791 + L1ME4a LINE L1 5492 6094 -27 396 236 30 125 chr12 2278810 2279018 -141507437 + MIR3 SINE MIR 5 191 -71 211 306 27 72 chr12 2280102 2280213 -141506242 - MIR SINE MIR -149 113 8 200 219 0 0 chr12 2280367 2280408 -141506047 + L2 LINE L2 3271 3311 -2 221 266 0 47 chr12 2280819 2280883 -141505572 + L2 LINE L2 2212 2272 -1042 272 323 68 38 chr12 2281522 2281655 -141504800 + MIR3 SINE MIR 5 141 -67 435 38 0 0 chr12 2282641 2282694 -141503761 + (CA)n Simple_repeat Simple_repeat 2 54 0 450 173 37 105 chr12 2282796 2282971 -141503484 - MIR SINE MIR -62 146 35 359 291 212 20 chr12 2283860 2284063 -141502392 + MIR SINE MIR 15 256 -6 455 257 53 23 chr12 2284243 2284414 -141502041 + MER104 DNA MER2_type 5 180 0 503 258 230 10 chr12 2284759 2284968 -141501487 - MIR SINE MIR -6 256 2 221 294 110 32 chr12 2285604 2285774 -141500681 + MIR3 SINE MIR 6 187 -61 965 286 139 11 chr12 2285925 2286504 -141499951 - L2 LINE L2 -2 3311 2658 565 308 88 9 chr12 2287276 2287503 -141498952 - MIR SINE MIR 0 262 18 252 349 54 24 chr12 2287650 2287816 -141498639 + L2 LINE L2 3127 3297 -16 203 263 58 88 chr12 2287954 2288091 -141498364 - MIR SINE MIR -46 216 84 4270 199 33 60 chr12 2288451 2289624 -141496831 - L1MC4a LINE L1 -1 7807 6666 311 342 88 0 chr12 2289847 2289961 -141496494 - L2 LINE L2 0 3313 3190 617 261 113 15 chr12 2292394 2292589 -141493866 - MIR SINE MIR -21 241 28 471 315 146 0 chr12 2292688 2292853 -141493602 - MER5A DNA MER1_type 0 189 1 529 293 72 22 chr12 2295432 2295613 -141490842 + MIR SINE MIR 73 262 0 379 290 98 36 chr12 2297702 2297895 -141488560 - MIR SINE MIR -7 255 51 334 234 56 37 chr12 2298297 2298404 -141488051 + L2 LINE L2 3205 3313 0 364 284 147 10 chr12 2298885 2299082 -141487373 - Charlie8 DNA MER1_type -2128 289 66 208 189 27 0 chr12 2299266 2299303 -141487152 + MIR SINE MIR 117 154 -108 493 274 11 45 chr12 2299335 2299514 -141486941 - MIR SINE MIR -29 233 61 384 222 267 7 chr12 2300077 2300212 -141486243 + MIR SINE MIR 6 175 -87 199 162 0 0 chr12 2301986 2302023 -141484432 - MIR SINE MIR -118 144 108 926 218 88 70 chr12 2302138 2302469 -141483986 + MER46C DNA MER2_type 1 337 -1 511 335 138 0 chr12 2303003 2303227 -141483228 - MIR SINE MIR 0 262 8 662 291 69 5 chr12 2305315 2305518 -141480937 + MIR SINE MIR 47 262 0 825 293 16 8 chr12 2305595 2305784 -141480671 + MIR SINE MIR 8 201 -61 1059 221 8 55 chr12 2305784 2306019 -141480436 + MER58A DNA MER1_type 1 224 0 825 293 16 8 chr12 2306019 2306082 -141480373 + MIR SINE MIR 201 262 0 182 310 60 80 chr12 2306115 2306215 -141480240 - MIR SINE MIR -77 185 88 907 99 0 0 chr12 2306286 2306407 -141480048 - AluY SINE Alu -7 304 184 1921 54 0 0 chr12 2306407 2306628 -141479827 - AluY SINE Alu -90 221 1 379 292 108 0 chr12 2307233 2307353 -141479102 - L3b LINE CR1 -159 1424 1292 209 229 42 0 chr12 2308381 2308429 -141478026 + MIR SINE MIR 98 147 -61 218 239 292 9 chr12 2310120 2310233 -141476222 + MIR SINE MIR 112 256 -6 203 309 117 11 chr12 2310249 2310343 -141476112 - L3b LINE CR1 -157 1426 1323 199 269 154 13 chr12 2311265 2311343 -141475112 - MER5A DNA MER1_type -98 91 3 309 237 105 18 chr12 2311589 2311703 -141474752 + MIR SINE MIR 25 148 -114 248 318 65 0 chr12 2312230 2312337 -141474118 - L2 LINE L2 -6 3307 3194 399 346 15 8 chr12 2312659 2312792 -141473663 + MER5A DNA MER1_type 51 184 -5 209 264 194 39 chr12 2313256 2313385 -141473070 - MER5B DNA MER1_type -26 152 4 693 267 96 23 chr12 2313544 2313847 -141472608 - MLT1J1 LTR MaLR -113 333 9 2278 111 49 9 chr12 2313856 2314180 -141472275 - MER1B DNA MER1_type 0 337 1 271 167 117 0 chr12 2314393 2314453 -141472002 + MER116 DNA Mariner 1 67 -13 228 350 50 21 chr12 2315044 2315184 -141471271 - MIR SINE MIR -111 151 8 695 174 84 62 chr12 2315656 2315834 -141470621 + MER5A DNA MER1_type 1 182 -7 1139 169 0 11 chr12 2316257 2316441 -141470014 + AluJo SINE Alu 86 267 -45 1689 181 23 19 chr12 2316715 2317025 -141469430 + AluJo SINE Alu 1 311 -1 620 287 72 51 chr12 2317148 2317323 -141469132 + MIR SINE MIR 7 190 -72 1777 217 112 8 chr12 2317323 2317469 -141468986 - Charlie1b DNA MER1_type -2238 523 393 2496 83 0 6 chr12 2317469 2317782 -141468673 + AluY SINE Alu 1 311 0 1777 217 112 8 chr12 2317782 2318109 -141468346 - Charlie1b DNA MER1_type -2368 393 1 620 287 72 51 chr12 2318109 2318170 -141468285 + MIR SINE MIR 190 248 -14 744 296 72 41 chr12 2319363 2319782 -141466673 - L2 LINE L2 -4 3309 2878 * 1457 251 89 69 chr12 2319750 2320416 -141466039 - L2 LINE L2 -345 2969 2291 518 277 0 0 chr12 2320899 2321011 -141465444 - MIR3 SINE MIR -6 202 91 207 298 43 21 chr12 2322301 2322395 -141464060 + MIR3 SINE MIR 109 204 -4 240 287 82 25 chr12 2323141 2323263 -141463192 + MIR SINE MIR 91 219 -43 283 321 30 15 chr12 2323312 2323443 -141463012 + MIR SINE MIR 20 152 -110 323 310 9 35 chr12 2323596 2323709 -141462746 + L2 LINE L2 3150 3259 -13 340 253 14 42 chr12 2323797 2323927 -141462528 - MIR SINE MIR -21 187 63 225 178 74 28 chr12 2324073 2324148 -141462307 - MIR3 SINE MIR -54 154 77 795 288 77 29 chr12 2326181 2326660 -141459795 - LTR33 LTR ERVL -4 517 16 640 259 43 82 chr12 2327979 2328138 -141458317 + MIR SINE MIR 40 189 -73 1993 127 21 0 chr12 2328138 2328422 -141458033 + AluJo SINE Alu 1 290 -22 640 259 43 82 chr12 2328422 2328494 -141457961 + MIR SINE MIR 189 262 0 1179 167 5 28 chr12 2329584 2329799 -141456656 + MER2 DNA MER2_type 1 210 -135 24 53 0 0 chr12 2329826 2329864 -141456591 + AT_rich Low_complexity Low_complexity 1 38 0 471 278 35 58 chr12 2331109 2331282 -141455173 - MIR SINE MIR -74 188 20 243 150 0 0 chr12 2332510 2332550 -141453905 - MER2 DNA MER2_type -225 120 81 32 43 0 0 chr12 2332563 2332609 -141453846 + AT_rich Low_complexity Low_complexity 1 46 0 239 307 53 26 chr12 2332667 2332781 -141453674 - MIR SINE MIR -64 144 28 207 277 128 64 chr12 2333598 2333739 -141452716 - MIR SINE MIR -2 260 111 615 75 0 0 chr12 2333855 2333949 -141452506 + (CA)n Simple_repeat Simple_repeat 2 95 0 3235 215 54 23 chr12 2334780 2335718 -141450737 - L1ME1 LINE L1 -6 6229 5265 1087 192 19 27 chr12 2335723 2335983 -141450472 - L1ME1 LINE L1 -1276 4939 4682 651 254 10 24 chr12 2335982 2336187 -141450268 - L1ME1 LINE L1 -3651 2564 2363 * 25 31 0 0 chr12 2336237 2336269 -141450186 + AT_rich Low_complexity Low_complexity 1 32 0 1151 145 9 54 chr12 2336274 2336495 -141449960 - MER2 DNA MER2_type -134 211 1 514 243 87 0 chr12 2336496 2336658 -141449797 - L1ME1 LINE L1 -3850 2365 2213 207 267 28 57 chr12 2336883 2337059 -141449396 + (CTTTG)n Simple_repeat Simple_repeat 2 172 0 3035 254 60 19 chr12 2337290 2337488 -141448967 - L1ME1 LINE L1 -4150 2246 2058 1337 42 6 0 chr12 2337488 2337654 -141448801 - L1PA4 LINE L1 -6 6149 5983 3035 254 60 19 chr12 2337654 2338554 -141447901 - L1ME1 LINE L1 -4338 2058 1103 617 253 60 76 chr12 2339341 2339590 -141446865 - MLT1L LTR MaLR -125 490 246 337 301 184 7 chr12 2339591 2339727 -141446728 - MER5A DNA MER1_type -1 188 29 231 270 56 0 chr12 2339746 2339835 -141446620 - MLT1J LTR MaLR -317 194 101 294 256 0 39 chr12 2340072 2340150 -141446305 + L2 LINE L2 3193 3267 -5 335 227 21 62 chr12 2340207 2340304 -141446151 - MER5A DNA MER1_type -85 104 12 591 236 7 21 chr12 2341778 2341922 -141444533 - MER63 DNA MER1_type -68 768 1 186 176 194 46 chr12 2343139 2343247 -141443208 - L2 LINE L2 -38 3234 3111 283 288 0 0 chr12 2344114 2344187 -141442268 - MER5B DNA MER1_type -1 177 105 965 185 46 0 chr12 2344207 2344380 -141442075 - MER5A DNA MER1_type -6 183 3 382 311 0 0 chr12 2344393 2344483 -141441972 + MER5B DNA MER1_type 88 177 -1 221 288 51 0 chr12 2344513 2344572 -141441883 - L2 LINE L2 -6 3307 3246 213 276 102 20 chr12 2344571 2344669 -141441786 - MER5B DNA MER1_type -72 106 1 * 197 390 90 10 chr12 2345319 2345419 -141441036 + MIR SINE MIR 19 126 -82 1964 144 38 49 chr12 2345498 2345866 -141440589 + MLT1A1 LTR MaLR 1 364 -1 192 293 86 26 chr12 2346146 2346262 -141440193 - MIR SINE MIR -22 240 118 1771 188 93 19 chr12 2346452 2346882 -141439573 + MLT1C LTR MaLR 6 467 0 2077 113 11 3 chr12 2347865 2348183 -141438272 + AluSq SINE Alu 1 320 0 1526 218 61 57 chr12 2348752 2349229 -141437226 + MLT1H LTR MaLR 71 549 0 196 324 108 20 chr12 2349501 2349603 -141436852 + L2 LINE L2 3174 3284 -29 260 309 39 34 chr12 2350452 2350656 -141435799 - L1ME4a LINE L1 -179 5942 5738 198 271 51 0 chr12 2352086 2352145 -141434310 + MIR SINE MIR 26 87 -175 744 288 49 0 chr12 2352217 2352441 -141434014 - MIR SINE MIR -14 248 11 212 288 0 17 chr12 2352431 2352490 -141433965 + MIR SINE MIR 100 157 -105 * 285 311 0 0 chr12 2352636 2352710 -141433745 - L3 LINE CR1 -1 1576 1503 186 286 0 0 chr12 2352708 2352750 -141433705 + L3 LINE CR1 1513 1554 -23 * 319 240 60 0 chr12 2352991 2353091 -141433364 - MER117 DNA MER1_type -91 106 1 326 333 0 23 chr12 2353105 2353237 -141433218 + MER94 DNA DNA 6 134 0 2167 122 3 3 chr12 2353860 2354154 -141432301 - AluSc SINE Alu -15 294 1 414 0 0 0 chr12 2355636 2355682 -141430773 + (CA)n Simple_repeat Simple_repeat 2 47 0 2194 139 79 25 chr12 2356270 2356674 -141429781 + MSTB LTR MaLR 1 426 0 223 69 0 0 chr12 2356716 2356745 -141429710 + MIR SINE MIR 116 144 -64 232 167 24 0 chr12 2357201 2357243 -141429212 + CT-rich Low_complexity Low_complexity 2 44 0 300 359 31 8 chr12 2357742 2357870 -141428585 + L2 LINE L2 3134 3264 -8 375 258 106 23 chr12 2358279 2358411 -141428044 - MER5B DNA MER1_type -35 143 1 519 267 93 17 chr12 2358835 2359007 -141427448 + MIR SINE MIR 7 191 -71 645 216 76 29 chr12 2359161 2359332 -141427123 + MIR SINE MIR 8 186 -76 339 198 9 19 chr12 2359346 2359452 -141427003 + CT-rich Low_complexity Low_complexity 3 107 0 216 329 13 0 chr12 2359654 2359730 -141426725 - L2 LINE L2 -257 3056 2980 510 170 21 0 chr12 2361020 2361114 -141425341 + MER103 DNA DNA 12 107 -59 464 280 38 8 chr12 2361609 2361741 -141424714 - MIR SINE MIR -106 156 21 274 306 207 29 chr12 2361836 2362078 -141424377 - L2 LINE L2 -90 3182 2898 2284 102 3 0 chr12 2362468 2362763 -141423692 + AluSx SINE Alu 1 296 -16 186 216 82 93 chr12 2363327 2363424 -141423031 - MER5A DNA MER1_type -31 158 63 297 128 0 0 chr12 2364950 2364997 -141421458 + (CA)n Simple_repeat Simple_repeat 2 48 0 270 176 0 0 chr12 2365035 2365086 -141421369 + (CA)n Simple_repeat Simple_repeat 2 52 0 234 91 0 0 chr12 2365122 2365155 -141421300 + (CA)n Simple_repeat Simple_repeat 2 34 0 331 290 88 38 chr12 2366414 2366579 -141419876 - MIR3 SINE MIR -29 179 5 1081 182 182 28 chr12 2367065 2367351 -141419104 + L1MDa LINE L1 15 344 -6196 2188 156 8 0 chr12 2367364 2367716 -141418739 - L1MB3 LINE L1 -7 6176 5822 865 204 33 0 chr12 2367717 2367898 -141418557 - L1MDa LINE L1 -6014 526 340 874 119 106 0 chr12 2367903 2368054 -141418401 + L1M2 LINE L1 5318 5484 -696 229 179 0 0 chr12 2368118 2368157 -141418298 + L1M2 LINE L1 5446 5484 -807 7416 200 72 12 chr12 2368461 2370280 -141416175 + L1MDa LINE L1 529 2455 -4085 981 153 49 178 chr12 2370281 2370646 -141415809 + L1MD2 LINE L1 5917 6234 -8 423 258 11 0 chr12 2373187 2373280 -141413175 - MIR SINE MIR -109 153 60 916 203 64 30 chr12 2373981 2374217 -141412238 - MIR SINE MIR -9 253 10 296 235 126 42 chr12 2374241 2374360 -141412095 + MIR SINE MIR 64 192 -70 192 333 167 43 chr12 2375174 2375360 -141411095 - MIR SINE MIR -38 224 16 421 250 151 13 chr12 2375530 2375682 -141410773 + MIR SINE MIR 28 200 -62 2506 211 104 69 chr12 2375978 2376776 -141409679 + LTR1B LTR ERV1 1 826 0 1876 149 0 11 chr12 2380300 2380575 -141405880 + AluSx SINE Alu 35 306 -6 948 119 8 0 chr12 2380621 2380747 -141405708 + AluJb SINE Alu 156 282 -30 213 39 0 0 chr12 2380752 2380778 -141405677 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 27 29 0 0 chr12 2381298 2381332 -141405123 + AT_rich Low_complexity Low_complexity 1 34 0 1812 132 40 36 chr12 2381653 2381957 -141404498 - AluJo SINE Alu -3 309 5 380 296 89 7 chr12 2382123 2382258 -141404197 - MIR SINE MIR -44 218 73 283 167 0 0 chr12 2382290 2382332 -141404123 - MIR SINE MIR -162 100 59 931 238 15 0 chr12 2383794 2383996 -141402459 + MER3 DNA MER1_type 5 209 0 223 273 161 12 chr12 2384073 2384234 -141402221 + L2 LINE L2 1700 1884 -1430 499 353 118 22 chr12 2384259 2384886 -141401569 + L2 LINE L2 2004 2690 -624 238 307 188 0 chr12 2385281 2385382 -141401073 + L2 LINE L2 3136 3255 -17 265 231 0 46 chr12 2385449 2385514 -141400941 - MER94 DNA DNA -1 133 72 798 307 112 25 chr12 2386343 2386948 -141399507 + L2 LINE L2 1699 2356 -958 200 306 0 0 chr12 2387021 2387083 -141399372 + L2 LINE L2 2297 2358 -956 1662 145 51 77 chr12 2387315 2387729 -141398726 - L1MA9 LINE L1 0 6312 5910 199 308 132 26 chr12 2387884 2388139 -141398316 + L2 LINE L2 2742 3048 -224 225 0 0 0 chr12 2388223 2388248 -141398207 + (TTTC)n Simple_repeat Simple_repeat 1 25 0 2207 134 0 0 chr12 2388275 2388582 -141397873 - AluSx SINE Alu -5 307 1 193 412 26 0 chr12 2388584 2388698 -141397757 + L2 LINE L2 3119 3235 -37 566 304 45 99 chr12 2388944 2389437 -141397018 - L2 LINE L2 0 3272 2807 293 206 31 72 chr12 2389441 2389538 -141396917 - MER5B DNA MER1_type -2 176 84 1591 191 87 17 chr12 2389558 2389913 -141396542 + MER63 DNA MER1_type 683 1062 0 419 262 19 0 chr12 2389913 2390020 -141396435 + MER5B DNA MER1_type 68 176 -2 212 303 72 80 chr12 2390024 2390288 -141396167 - L2 LINE L2 -514 2800 2539 228 325 60 0 chr12 2390514 2390597 -141395858 + MIR3 SINE MIR 116 203 -5 336 344 48 32 chr12 2391390 2391579 -141394876 + L3b LINE CR1 1110 1301 -282 205 364 61 8 chr12 2391687 2391819 -141394636 + L3b LINE CR1 1441 1579 -4 330 272 136 39 chr12 2392652 2392755 -141393700 - MIR SINE MIR -117 145 33 1572 219 73 20 chr12 2393270 2393723 -141392732 - Charlie4a DNA MER1_type -16 492 16 297 273 23 55 chr12 2394562 2394690 -141391765 - MIR3 SINE MIR -13 195 72 2824 0 0 0 chr12 2395740 2396035 -141390420 - AluYa5 SINE Alu -16 295 1 375 204 34 34 chr12 2396123 2396211 -141390244 + MIR3 SINE MIR 81 168 -40 439 146 11 11 chr12 2396916 2397005 -141389450 + GA-rich Low_complexity Low_complexity 3 91 0 713 229 24 6 chr12 2397106 2397276 -141389179 - MER97b DNA MER1_type? -876 177 5 438 294 32 46 chr12 2397949 2398167 -141388288 + MIR SINE MIR 11 225 -37 237 288 15 0 chr12 2399295 2399361 -141387094 - L2 LINE L2 -20 3252 3186 261 267 105 0 chr12 2399475 2399561 -141386894 - MIR SINE MIR -138 124 30 207 327 18 0 chr12 2399684 2399739 -141386716 - L2 LINE L2 -9 3263 3208 247 291 126 34 chr12 2400247 2400422 -141386033 - MIR3 SINE MIR -9 199 9 292 277 88 36 chr12 2400640 2400777 -141385678 + MIR SINE MIR 44 187 -75 481 248 20 46 chr12 2401692 2401845 -141384610 + MIR3 SINE MIR 49 197 -11 271 284 163 14 chr12 2401903 2402044 -141384411 + L3b LINE CR1 1179 1340 -243 511 270 196 48 chr12 2402058 2402546 -141383909 + L2 LINE L2 2682 3311 -2 194 353 37 37 chr12 2402557 2402693 -141383762 + L3b LINE CR1 1349 1484 -99 22 0 0 0 chr12 2403169 2403191 -141383264 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr12 2404038 2404060 -141382395 + (A)n Simple_repeat Simple_repeat 1 22 0 918 177 21 52 chr12 2404173 2404365 -141382090 + MER5A DNA MER1_type 4 189 0 1020 287 151 37 chr12 2404573 2405141 -141381314 - L3 LINE CR1 -204 1373 741 798 254 146 36 chr12 2405205 2405787 -141380668 - L1ME4a LINE L1 -209 6306 5661 411 281 112 49 chr12 2405793 2406078 -141380377 - L1ME4a LINE L1 -886 5654 5352 2330 90 0 17 chr12 2406081 2406381 -141380074 + AluSx SINE Alu 1 295 -17 26 0 0 0 chr12 2406747 2406773 -141379682 + AT_rich Low_complexity Low_complexity 1 26 0 701 299 111 28 chr12 2407033 2407684 -141378771 - L1ME4a LINE L1 -1524 5016 4312 24 0 0 0 chr12 2407885 2407909 -141378546 + AT_rich Low_complexity Low_complexity 1 24 0 383 287 52 64 chr12 2408059 2408391 -141378064 - L1MDa LINE L1 -3750 2790 2459 1843 138 48 33 chr12 2408398 2408695 -141377760 + MER1B DNA MER1_type 1 305 -2407 2022 145 119 38 chr12 2408695 2409089 -141377366 + MSTA LTR MaLR 1 426 -2 1843 138 48 33 chr12 2409089 2409125 -141377330 + MER1B DNA MER1_type 305 339 0 28 95 0 0 chr12 2409390 2409474 -141376981 + AT_rich Low_complexity Low_complexity 1 84 0 352 274 84 0 chr12 2409549 2409644 -141376811 - MIR SINE MIR -140 122 20 226 274 98 44 chr12 2409653 2409857 -141376598 - HAL1b LINE L1 -617 731 517 844 339 200 3 chr12 2410140 2410704 -141375751 - L3 LINE CR1 -847 730 56 187 232 54 40 chr12 2413558 2413638 -141372817 + L2 LINE L2 3146 3270 -43 346 386 82 0 chr12 2413676 2413909 -141372546 - MIR SINE MIR -6 256 5 858 221 128 12 chr12 2414027 2414276 -141372179 - MLT1J LTR MaLR -8 503 226 251 281 130 36 chr12 2414296 2414488 -141371967 - MLT1J LTR MaLR -260 251 42 409 296 9 0 chr12 2415039 2415147 -141371308 - MIR3 SINE MIR -13 195 87 197 69 52 35 chr12 2415577 2415635 -141370820 + (GGGTG)n Simple_repeat Simple_repeat 1 59 0 362 277 9 27 chr12 2415649 2415761 -141370694 - MER5A DNA MER1_type -48 141 32 526 272 127 19 chr12 2415901 2416169 -141370286 - L3b LINE CR1 -178 1405 1109 22 0 0 0 chr12 2416225 2416247 -141370208 + AT_rich Low_complexity Low_complexity 1 22 0 227 296 69 15 chr12 2417279 2417380 -141369075 + MIR SINE MIR 57 160 -48 513 0 0 0 chr12 2417476 2417533 -141368922 + (CA)n Simple_repeat Simple_repeat 2 58 0 2365 96 3 0 chr12 2417793 2418096 -141368359 - AluSq SINE Alu -9 304 1 492 240 19 0 chr12 2418849 2418953 -141367502 + MIR SINE MIR 42 147 -115 186 318 35 35 chr12 2419095 2419180 -141367275 - MIR3 SINE MIR -114 94 10 204 245 19 0 chr12 2419697 2419750 -141366705 + (CAATT)n Simple_repeat Simple_repeat 4 57 0 995 191 44 0 chr12 2419894 2420098 -141366357 - MER20 DNA MER1_type -3 216 4 189 294 15 15 chr12 2420178 2420246 -141366209 - L2 LINE L2 -220 3052 2985 202 322 17 17 chr12 2422557 2422672 -141363783 + L2 LINE L2 2992 3106 -166 212 254 34 0 chr12 2422700 2422759 -141363696 + L2 LINE L2 3247 3307 -6 1127 129 5 55 chr12 2424477 2424694 -141361761 + MER20 DNA MER1_type 10 215 -4 358 284 203 31 chr12 2424759 2424981 -141361474 + L3 LINE CR1 1308 1567 -10 592 279 135 5 chr12 2425298 2425513 -141360942 + MIR SINE MIR 20 262 0 191 138 0 0 chr12 2425972 2426001 -141360454 - L2 LINE L2 -33 3239 3211 280 196 0 0 chr12 2426022 2426073 -141360382 - MIR SINE MIR -114 148 98 306 286 48 29 chr12 2426661 2426766 -141359689 + MIR3 SINE MIR 94 200 -8 344 213 0 22 chr12 2429407 2429590 -141356865 + (CA)n Simple_repeat Simple_repeat 2 180 0 626 289 35 20 chr12 2430122 2430319 -141356136 + MIR SINE MIR 14 213 -49 890 150 19 25 chr12 2432187 2432347 -141354108 - MER53 DNA DNA -7 182 24 274 291 38 136 chr12 2432643 2432856 -141353599 + MIR SINE MIR 20 211 -51 216 111 28 0 chr12 2433232 2433268 -141353187 - L2 LINE L2 -23 3249 3213 2515 57 3 3 chr12 2434811 2435109 -141351346 - AluY SINE Alu -13 298 1 300 305 34 17 chr12 2435356 2435531 -141350924 + L1ME4a LINE L1 5445 5602 -519 437 283 157 13 chr12 2435740 2435970 -141350485 + L1ME4a LINE L1 5835 6097 -24 570 191 29 0 chr12 2435973 2436078 -141350377 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3340 134 104 18 chr12 2436075 2436755 -141349700 + Tigger3(Golem) DNA MER2_type 2290 3028 -1 193 286 176 55 chr12 2437947 2438146 -141348309 + MIR SINE MIR 40 262 0 221 83 28 0 chr12 2438758 2438794 -141347661 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 388 305 40 13 chr12 2440979 2441130 -141345325 - MIR SINE MIR -55 207 53 660 232 0 0 chr12 2441136 2441261 -141345194 - FLAM_A SINE Alu -8 125 1 183 218 164 0 chr12 2441455 2441510 -141344945 + L2 LINE L2 3200 3263 -9 225 244 27 20 chr12 2441853 2441940 -141344515 + MIR SINE MIR 94 130 -78 232 367 87 5 chr12 2441987 2442183 -141344272 - L3b LINE CR1 -96 1487 1276 268 304 60 46 chr12 2442458 2442596 -141343859 + MIR SINE MIR 18 160 -48 332 294 152 6 chr12 2442931 2443301 -141343154 - L1ME4a LINE L1 -124 5997 5559 2042 173 49 117 chr12 2443425 2444102 -141342353 - L1MC4 LINE L1 0 8042 7412 1059 255 134 34 chr12 2444104 2444551 -141341904 - L1MC4 LINE L1 -899 7143 6652 21 36 0 0 chr12 2444592 2444620 -141341835 + AT_rich Low_complexity Low_complexity 1 28 0 375 321 12 42 chr12 2444914 2445082 -141341373 - L1ME4a LINE L1 -1127 5019 4857 627 221 15 28 chr12 2445182 2445388 -141341067 + MIR SINE MIR 6 262 0 208 329 26 13 chr12 2445408 2445484 -141340971 - MIR3 SINE MIR -49 159 83 218 310 152 38 chr12 2448205 2448363 -141338092 - MIR3 SINE MIR -15 193 18 532 162 204 26 chr12 2448602 2448793 -141337662 - MLT1J LTR MaLR -58 453 229 190 238 0 24 chr12 2448927 2448969 -141337486 + MIR3 SINE MIR 142 182 -26 368 296 19 56 chr12 2449330 2449492 -141336963 + MER5A DNA MER1_type 3 158 -31 402 281 244 6 chr12 2450114 2450278 -141336177 - MIR SINE MIR -6 256 54 427 222 75 96 chr12 2450693 2450922 -141335533 + MIR SINE MIR 26 245 -17 21 0 0 0 chr12 2452493 2452514 -141333941 + AT_rich Low_complexity Low_complexity 1 21 0 204 274 16 16 chr12 2452648 2452710 -141333745 + GA-rich Low_complexity Low_complexity 4 65 0 397 297 0 25 chr12 2452883 2453040 -141333415 - MIR SINE MIR -6 256 38 258 234 43 64 chr12 2453182 2453276 -141333179 + MIR SINE MIR 90 181 -81 761 242 175 47 chr12 2453959 2454302 -141332153 + L2 LINE L2 2918 3304 -9 348 204 153 10 chr12 2454347 2454445 -141332010 - MIR SINE MIR -63 199 88 215 213 19 28 chr12 2456827 2456935 -141329520 + CT-rich Low_complexity Low_complexity 4 110 0 246 244 0 44 chr12 2456958 2457048 -141329407 + CT-rich Low_complexity Low_complexity 2 87 0 182 284 222 0 chr12 2457192 2457273 -141329182 + L2 LINE L2 3144 3242 -30 3226 196 39 20 chr12 2458118 2458833 -141327622 - L1MB2 LINE L1 -2 6169 5441 194 211 39 39 chr12 2458837 2458889 -141327566 - MIR SINE MIR -30 232 181 655 248 80 36 chr12 2459364 2459605 -141326850 - MIR SINE MIR 0 262 12 1217 235 128 35 chr12 2460877 2461425 -141325030 + L1ME3A LINE L1 5561 6159 -11 972 323 177 21 chr12 2462594 2463352 -141323103 + L3 LINE CR1 471 1346 -231 791 128 0 15 chr12 2463835 2463968 -141322487 - L1MB3 LINE L1 -1 6182 6052 195 42 0 0 chr12 2465408 2465432 -141321023 + (TA)n Simple_repeat Simple_repeat 2 25 0 421 250 225 25 chr12 2465508 2465668 -141320787 + MIR SINE MIR 21 212 -50 215 292 0 0 chr12 2465959 2466007 -141320448 + L2 LINE L2 3141 3188 -84 4740 148 86 13 chr12 2466140 2466269 -141320186 - L1MA9 LINE L1 0 6312 6194 321 26 0 0 chr12 2466269 2466307 -141320148 + (TG)n Simple_repeat Simple_repeat 1 38 0 4740 148 86 13 chr12 2466307 2467118 -141319337 - L1MA9 LINE L1 -118 6194 5303 1860 157 61 5 chr12 2467118 2467527 -141318928 + L1MA9 LINE L1 4670 5302 -844 457 217 12 121 chr12 2467715 2467881 -141318574 + MER5A DNA MER1_type 1 148 -41 188 305 0 34 chr12 2468184 2468243 -141318212 + MER5A DNA MER1_type 130 186 -3 494 235 27 54 chr12 2468300 2468449 -141318006 + MIR3 SINE MIR 16 160 -48 318 258 0 21 chr12 2468990 2469083 -141317372 - MER103 DNA DNA -68 98 8 752 256 128 9 chr12 2469671 2469882 -141316573 + MIR SINE MIR 16 251 -11 1694 186 4 0 chr12 2469930 2470205 -141316250 - AluJb SINE Alu -18 294 19 472 298 33 22 chr12 2470379 2470560 -141315895 + MIR3 SINE MIR 20 202 -6 1127 189 102 81 chr12 2472069 2472170 -141314285 + MLT1B LTR MaLR 2 99 -291 804 160 8 0 chr12 2472170 2472301 -141314154 - FLAM_C SINE Alu -1 132 1 1127 189 102 81 chr12 2472301 2472580 -141313875 + MLT1B LTR MaLR 99 390 0 296 118 29 59 chr12 2474180 2474248 -141312207 + MER103 DNA DNA 47 112 -54 1872 147 3 33 chr12 2475145 2475451 -141311004 - AluJb SINE Alu -15 297 1 621 270 113 0 chr12 2475825 2475984 -141310471 - MIR SINE MIR -17 245 69 318 269 38 108 chr12 2476075 2476261 -141310194 + MER5A DNA MER1_type 17 189 0 329 255 38 125 chr12 2476443 2476627 -141309828 + MER5B DNA MER1_type 1 168 -10 184 382 11 0 chr12 2476966 2477055 -141309400 - MIR SINE MIR -74 134 45 2275 108 0 0 chr12 2477188 2477475 -141308980 + AluSc SINE Alu 1 287 -22 278 287 110 7 chr12 2477615 2477751 -141308704 - MIR SINE MIR -112 150 1 194 282 118 0 chr12 2479188 2479273 -141307182 - L2 LINE L2 -744 2570 2476 354 326 92 32 chr12 2479904 2480142 -141306313 + MIR SINE MIR 2 262 0 239 316 164 29 chr12 2480211 2480455 -141306000 - L2 LINE L2 -2 3270 2994 250 309 104 83 chr12 2481376 2481810 -141304645 + L2 LINE L2 2830 3272 0 253 219 134 37 chr12 2481925 2482007 -141304448 - L2 LINE L2 -2 3311 3222 1528 121 36 5 chr12 2482103 2482326 -141304129 + MER30 DNA MER1_type 1 230 0 337 271 0 11 chr12 2482503 2482598 -141303857 - L3b LINE CR1 -194 1389 1296 376 285 32 16 chr12 2483194 2483317 -141303138 - MIR SINE MIR -134 128 4 219 355 48 8 chr12 2483573 2483697 -141302758 + L2 LINE L2 3179 3307 -6 463 311 117 5 chr12 2484593 2484815 -141301640 - MIR SINE MIR 0 262 16 488 328 81 6 chr12 2485728 2485902 -141300553 + MIR3 SINE MIR 18 204 -4 443 239 51 36 chr12 2486103 2486241 -141300214 + L2 LINE L2 3174 3313 0 293 308 10 10 chr12 2487717 2487821 -141298634 - MER5A DNA MER1_type -84 105 2 * 503 314 0 13 chr12 2487821 2487973 -141298482 - MIR3 SINE MIR -47 161 12 351 286 112 0 chr12 2488124 2488222 -141298233 + MIR SINE MIR 133 241 -21 334 336 0 0 chr12 2489242 2489358 -141297097 + MIR3 SINE MIR 68 183 -25 375 212 0 0 chr12 2489975 2490060 -141296395 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 286 297 85 48 chr12 2490179 2490344 -141296111 - L3 LINE CR1 -144 1433 1263 240 175 167 53 chr12 2490426 2490540 -141295915 - MER113 DNA MER1_type? -306 215 89 328 341 51 7 chr12 2490941 2491079 -141295376 - MIR SINE MIR -111 151 8 195 373 40 0 chr12 2491112 2491187 -141295268 - MIR3 SINE MIR -40 168 91 736 263 81 16 chr12 2493256 2493503 -141292952 - MLT1L LTR MaLR -4 611 349 388 284 39 8 chr12 2493976 2494103 -141292352 + MIR SINE MIR 58 188 -74 890 203 0 15 chr12 2494143 2494481 -141291974 + (TGG)n Simple_repeat Simple_repeat 1 332 0 719 209 0 11 chr12 2494511 2494693 -141291762 + (TGG)n Simple_repeat Simple_repeat 1 180 0 903 178 0 4 chr12 2494728 2494960 -141291495 + (TGG)n Simple_repeat Simple_repeat 1 231 0 195 366 0 0 chr12 2495706 2495777 -141290678 + L3 LINE CR1 1492 1562 -15 1875 159 26 0 chr12 2496631 2496977 -141289478 - L1MB4 LINE L1 0 6180 5826 358 291 23 0 chr12 2498525 2498611 -141287844 - MIR SINE MIR -64 144 57 231 330 10 10 chr12 2498911 2499008 -141287447 + GA-rich Low_complexity Low_complexity 3 99 0 1981 148 92 14 chr12 2499112 2499483 -141286972 - MSTB LTR MaLR 0 426 27 2137 136 32 70 chr12 2499505 2499945 -141286510 - MSTB-int LTR MaLR 0 1651 1229 222 317 37 0 chr12 2500802 2500884 -141285571 + MIR3 SINE MIR 121 205 -3 271 309 66 66 chr12 2501117 2501405 -141285050 + L2 LINE L2 2329 2616 -698 278 180 16 0 chr12 2502540 2502601 -141283854 + (TGGG)n Simple_repeat Simple_repeat 3 64 0 869 171 0 11 chr12 2502635 2502816 -141283639 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 243 257 40 0 chr12 2502816 2502890 -141283565 + (TGGG)n Simple_repeat Simple_repeat 1 77 0 762 211 0 0 chr12 2502890 2503070 -141283385 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 742 198 7 0 chr12 2503097 2503409 -141283046 + (TGGA)n Simple_repeat Simple_repeat 1 314 0 348 284 26 17 chr12 2503959 2504075 -141282380 - MER5A DNA MER1_type -14 175 59 1919 153 14 23 chr12 2505677 2506023 -141280432 - MER61A LTR ERV1 0 343 1 2759 36 0 0 chr12 2506794 2507100 -141279355 + AluY SINE Alu 1 306 -5 482 317 12 0 chr12 2510062 2510223 -141276232 + L2 LINE L2 110 272 -3042 435 270 101 14 chr12 2510250 2510398 -141276057 - MER58B DNA MER1_type -3 338 178 2177 259 108 132 chr12 2510441 2511809 -141274646 + L2 LINE L2 361 1760 -1553 1266 167 22 61 chr12 2511809 2512120 -141274335 + MER33 DNA MER1_type 26 324 0 2177 259 108 132 chr12 2512120 2513464 -141272991 + L2 LINE L2 1760 3313 0 218 323 32 0 chr12 2515366 2515428 -141271027 - MIR SINE MIR -125 83 20 1983 108 23 96 chr12 2515493 2515836 -141270619 - AluYb8 SINE Alu 0 318 1 496 277 18 119 chr12 2516483 2516909 -141269546 - MLT1I LTR MaLR -20 389 1 2754 275 66 73 chr12 2517567 2519130 -141267325 + L2 LINE L2 1752 3312 -1 2617 37 10 0 chr12 2519432 2519730 -141266725 - AluY SINE Alu -10 301 1 24 53 0 0 chr12 2519964 2520002 -141266453 + AT_rich Low_complexity Low_complexity 1 38 0 258 265 0 15 chr12 2520098 2520166 -141266289 - L2 LINE L2 -212 3060 2994 234 284 45 0 chr12 2520748 2520815 -141265640 - L2 LINE L2 -3 3310 3241 794 268 49 8 chr12 2521445 2521691 -141264764 + MIR SINE MIR 5 260 -2 222 345 30 18 chr12 2523183 2523351 -141263104 + MIR3 SINE MIR 24 193 -15 293 255 106 28 chr12 2523775 2523916 -141262539 - MIR3 SINE MIR -16 192 41 329 258 161 0 chr12 2525285 2525409 -141261046 + MIR3 SINE MIR 29 172 -36 192 40 0 0 chr12 2525520 2525545 -141260910 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 188 250 36 0 chr12 2525819 2525875 -141260580 - L2 LINE L2 -3 3310 3253 24 0 0 0 chr12 2526297 2526321 -141260134 + AT_rich Low_complexity Low_complexity 1 24 0 670 274 139 22 chr12 2527058 2527281 -141259174 + MIR SINE MIR 12 260 -2 1901 143 21 0 chr12 2527365 2527652 -141258803 - AluSx SINE Alu -18 294 2 228 219 27 0 chr12 2527662 2527735 -141258720 - L1MB7 LINE L1 -1 6183 6109 * 1574 270 50 79 chr12 2527725 2528205 -141258250 - L1ME LINE L1 -4331 1749 1257 2413 85 3 0 chr12 2528205 2528500 -141257955 - AluSg1 SINE Alu -13 296 1 1574 270 50 79 chr12 2528500 2529373 -141257082 - L1ME LINE L1 -4823 1257 531 337 286 29 0 chr12 2530135 2530240 -141256215 - MIR3 SINE MIR -45 163 56 2416 102 0 3 chr12 2530994 2531308 -141255147 + AluSq SINE Alu 1 313 0 2480 57 0 0 chr12 2531539 2531849 -141254606 + AluY SINE Alu 1 310 0 498 290 35 21 chr12 2531857 2532252 -141254203 + L1MEd LINE L1 691 1081 -5048 353 284 108 52 chr12 2532340 2532534 -141253921 + L1ME3A LINE L1 5959 6163 -7 235 217 60 36 chr12 2532681 2532764 -141253691 + MER117 DNA MER1_type 32 116 -81 461 335 138 13 chr12 2532830 2533054 -141253401 + MIR SINE MIR 11 262 0 543 295 33 0 chr12 2534011 2534221 -141252234 + LTR33 LTR ERVL 20 236 -285 254 279 29 0 chr12 2534902 2534970 -141251485 + MER5A DNA MER1_type 18 87 -102 599 332 101 8 chr12 2535084 2535322 -141251133 - MIR SINE MIR 0 262 3 929 212 0 6 chr12 2535736 2535901 -141250554 - FRAM SINE Alu -2 164 1 428 282 41 100 chr12 2536804 2537123 -141249332 + L2 LINE L2 2972 3271 -1 227 328 0 0 chr12 2537113 2537180 -141249275 + MIR3 SINE MIR 136 202 -6 * 587 316 35 4 chr12 2538880 2539108 -141247347 + MIR SINE MIR 9 243 -19 739 339 60 37 chr12 2539115 2539546 -141246909 - L3 LINE CR1 -16 1561 1121 327 333 91 0 chr12 2539792 2539924 -141246531 - L2 LINE L2 -541 2773 2630 286 238 0 112 chr12 2539978 2540121 -141246334 + L1ME4a LINE L1 5992 6118 -3 652 304 87 58 chr12 2540491 2541023 -141245432 - L2 LINE L2 -2 3270 2730 646 167 30 8 chr12 2542069 2542201 -141244254 - L1MB3 LINE L1 0 6183 6049 279 282 51 0 chr12 2542488 2542566 -141243889 + MIR SINE MIR 111 192 -70 237 65 0 0 chr12 2545618 2545649 -141240806 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 222 344 133 20 chr12 2546415 2546566 -141239889 - L3 LINE CR1 -1398 179 12 1827 203 54 14 chr12 2547470 2547914 -141238541 + L1ME1 LINE L1 5700 6161 -5 308 164 15 0 chr12 2547941 2548008 -141238447 + GA-rich Low_complexity Low_complexity 2 69 0 374 57 19 0 chr12 2548140 2548193 -141238262 + (GGA)n Simple_repeat Simple_repeat 2 55 0 315 0 0 0 chr12 2548484 2548519 -141237936 + (TC)n Simple_repeat Simple_repeat 2 36 0 978 79 29 14 chr12 2550533 2550673 -141235782 - L1PA8 LINE L1 0 6172 6031 286 221 47 47 chr12 2551398 2551484 -141234971 - L2 LINE L2 -11 3261 3176 202 226 38 0 chr12 2552470 2552523 -141233932 + CT-rich Low_complexity Low_complexity 6 60 0 389 331 64 17 chr12 2552553 2552725 -141233730 - MER5A DNA MER1_type -4 185 6 306 0 0 0 chr12 2554491 2554525 -141231930 + (CA)n Simple_repeat Simple_repeat 1 34 0 2514 67 0 13 chr12 2557446 2557761 -141228694 + AluY SINE Alu 1 311 0 238 186 23 0 chr12 2557976 2558019 -141228436 + L2 LINE L2 3267 3310 -3 714 229 30 61 chr12 2558777 2559008 -141227447 - L2 LINE L2 0 3313 3090 546 186 132 12 chr12 2559389 2559556 -141226899 - MER5A DNA MER1_type -2 187 1 731 175 145 6 chr12 2559642 2559808 -141226647 - MER5A DNA MER1_type 0 189 1 775 246 29 19 chr12 2560023 2560230 -141226225 + MER63A DNA MER1_type 1 209 -1 1074 117 0 0 chr12 2562035 2562180 -141224275 + FRAM SINE Alu 1 140 -36 484 303 96 5 chr12 2562889 2563077 -141223378 + MIR SINE MIR 58 262 0 373 298 126 7 chr12 2563112 2563263 -141223192 - MIR3 SINE MIR -6 202 34 454 370 45 4 chr12 2564135 2564378 -141222077 - MIR SINE MIR -7 255 3 1742 188 10 13 chr12 2564891 2565194 -141221261 + AluJo SINE Alu 1 302 -10 2784 216 49 11 chr12 2565875 2566483 -141219972 + MER82 DNA MER2_type 14 644 -9 243 125 0 0 chr12 2568093 2568133 -141218322 + (CA)n Simple_repeat Simple_repeat 2 41 0 955 212 30 20 chr12 2568661 2568864 -141217591 + MER63A DNA MER1_type 1 205 -5 1061 174 11 0 chr12 2570233 2570411 -141216044 + MER5A DNA MER1_type 4 183 -6 2064 274 157 24 chr12 2572404 2573695 -141212760 - L2 LINE L2 0 3313 1850 2583 54 0 0 chr12 2574848 2575146 -141211309 + AluY SINE Alu 1 298 -13 213 291 154 18 chr12 2575455 2575565 -141210890 - MIR3 SINE MIR -72 136 12 233 223 58 39 chr12 2579017 2579120 -141207335 + L3b LINE CR1 1144 1248 -335 300 258 83 17 chr12 2579329 2579449 -141207006 - MIR SINE MIR -70 192 65 266 379 0 10 chr12 2580818 2580921 -141205534 - L2 LINE L2 -82 3190 3089 560 301 79 20 chr12 2581006 2581411 -141205044 - MLT1J2 LTR MaLR -2 448 20 267 309 92 44 chr12 2581563 2581812 -141204643 - L2 LINE L2 -432 2882 2622 285 238 125 12 chr12 2584753 2584833 -141201622 + MIR3 SINE MIR 120 208 0 2159 243 17 22 chr12 2585091 2585631 -141200824 - LTR31 LTR ERV1 -9 610 74 211 308 46 0 chr12 2585954 2586019 -141200436 + L2 LINE L2 3237 3304 -9 248 303 90 49 chr12 2587656 2587778 -141198677 - MIR SINE MIR -116 146 20 555 226 71 19 chr12 2587838 2587993 -141198462 + MIR3 SINE MIR 7 169 -39 266 309 81 52 chr12 2588314 2588524 -141197931 - L3 LINE CR1 -11 1566 1351 201 167 0 0 chr12 2588835 2588871 -141197584 + CT-rich Low_complexity Low_complexity 1 36 0 198 216 52 95 chr12 2590321 2590437 -141196018 + MIR SINE MIR 109 219 -43 402 353 143 28 chr12 2591119 2591581 -141194874 - L3 LINE CR1 -87 1490 976 2386 100 0 0 chr12 2591629 2591929 -141194526 + AluY SINE Alu 1 300 -11 2074 139 0 22 chr12 2591938 2592255 -141194200 + AluJo SINE Alu 1 310 -2 350 308 85 8 chr12 2592935 2593065 -141193390 + MIR3 SINE MIR 9 148 -60 1952 177 0 0 chr12 2593072 2593371 -141193084 + AluJo SINE Alu 5 303 -9 474 227 133 0 chr12 2593429 2593557 -141192898 - MIR SINE MIR -109 153 9 640 266 106 30 chr12 2593753 2593990 -141192465 + MIR SINE MIR 6 260 -2 297 298 0 11 chr12 2594960 2595054 -141191401 + T-rich Low_complexity Low_complexity 3 95 0 205 294 92 37 chr12 2595057 2595166 -141191289 - MIR3 SINE MIR -41 167 53 293 244 78 43 chr12 2595541 2595656 -141190799 + MIR SINE MIR 46 164 -98 480 266 176 23 chr12 2596368 2596755 -141189700 - LTR33 LTR ERVL -58 463 18 563 266 136 10 chr12 2596984 2597183 -141189272 - MER58A DNA MER1_type 0 224 1 1537 213 14 72 chr12 2597358 2597772 -141188683 - MLT1B LTR MaLR 0 390 1 8961 100 26 8 chr12 2601018 2602282 -141184173 - HSMAR1 DNA Mariner 0 1287 1 254 164 18 0 chr12 2604144 2604199 -141182256 + (TG)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chr12 2604580 2604602 -141181853 + AT_rich Low_complexity Low_complexity 1 22 0 476 299 24 37 chr12 2604928 2605092 -141181363 + MIR3 SINE MIR 36 197 -11 21 36 0 0 chr12 2605104 2605132 -141181323 + AT_rich Low_complexity Low_complexity 1 28 0 466 285 163 19 chr12 2608704 2608974 -141177481 - L2 LINE L2 0 3313 3005 332 300 50 0 chr12 2609621 2609741 -141176714 + MIR3 SINE MIR 42 167 -41 185 271 0 34 chr12 2609831 2609890 -141176565 + MIR3 SINE MIR 149 205 -3 255 301 14 0 chr12 2614368 2614441 -141172014 + L2 LINE L2 3240 3313 0 22 0 0 0 chr12 2615457 2615479 -141170976 + AT_rich Low_complexity Low_complexity 1 22 0 347 284 12 0 chr12 2615501 2615582 -141170873 + L2 LINE L2 3232 3313 0 231 88 0 0 chr12 2615787 2615821 -141170634 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 324 237 223 22 chr12 2616122 2616261 -141170194 - MIR SINE MIR -93 169 3 1289 201 59 7 chr12 2616343 2616632 -141169823 - MER33 DNA MER1_type -4 320 17 207 0 0 0 chr12 2617370 2617393 -141169062 + (A)n Simple_repeat Simple_repeat 1 23 0 3500 136 34 37 chr12 2619256 2619901 -141166554 - L1MA3 LINE L1 0 6305 5663 229 252 35 61 chr12 2620497 2620612 -141165843 + L3 LINE CR1 1439 1550 -27 454 204 59 150 chr12 2620633 2620853 -141165602 + MER112 DNA MER1_type 48 247 -13 216 338 93 25 chr12 2621164 2621368 -141165087 + L2 LINE L2 2426 2643 -671 670 231 11 33 chr12 2621644 2621708 -141164747 - MER5B DNA MER1_type 0 178 114 2898 7 3 0 chr12 2621708 2622018 -141164437 + AluYb8 SINE Alu 1 311 -7 670 231 11 33 chr12 2622018 2622135 -141164320 - MER5B DNA MER1_type -64 114 1 301 347 122 0 chr12 2622403 2622550 -141163905 + MIR SINE MIR 63 227 -35 236 315 178 7 chr12 2622626 2622772 -141163683 - MIR SINE MIR -3 259 89 394 279 120 22 chr12 2623726 2623909 -141162546 + MIR SINE MIR 62 262 0 302 316 107 20 chr12 2624499 2624743 -141161712 - MLT1J LTR MaLR -22 489 225 2359 150 48 7 chr12 2624793 2625451 -141161004 + L1MB3 LINE L1 5451 6183 0 368 261 147 41 chr12 2625745 2625818 -141160637 - MER112 DNA MER1_type 0 260 196 3179 185 49 0 chr12 2625818 2626468 -141159987 - L1MB7 LINE L1 -1 6183 5502 368 261 147 41 chr12 2626468 2626612 -141159843 - MER112 DNA MER1_type -64 196 20 658 259 25 84 chr12 2627523 2627797 -141158658 - MIR SINE MIR -3 259 2 207 100 0 0 chr12 2628550 2628580 -141157875 + (T)n Simple_repeat Simple_repeat 1 30 0 447 68 0 0 chr12 2628819 2628878 -141157577 + (TCC)n Simple_repeat Simple_repeat 2 60 0 1083 106 18 0 chr12 2628984 2629328 -141157127 + (TCC)n Simple_repeat Simple_repeat 1 350 0 407 43 57 0 chr12 2629337 2629407 -141157048 + CT-rich Low_complexity Low_complexity 2 75 0 1049 99 11 17 chr12 2629408 2629589 -141156866 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1495 169 26 38 chr12 2629600 2629866 -141156589 - AluJo SINE Alu 0 312 50 180 0 0 0 chr12 2633755 2633775 -141152680 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 500 257 70 48 chr12 2634284 2634432 -141152023 - L2 LINE L2 0 3313 3153 2696 13 0 0 chr12 2634432 2634735 -141151720 - AluY SINE Alu -8 303 1 500 257 70 48 chr12 2634735 2634819 -141151636 - L2 LINE L2 -160 3153 3072 446 240 123 18 chr12 2635132 2635303 -141151152 - L2 LINE L2 -747 2567 2379 23 0 0 0 chr12 2636139 2636162 -141150293 + AT_rich Low_complexity Low_complexity 1 23 0 1545 163 7 53 chr12 2636162 2636462 -141149993 - AluJo SINE Alu -26 286 1 274 287 0 37 chr12 2637418 2637526 -141148929 + MER5A DNA MER1_type 21 124 -65 466 270 85 36 chr12 2637711 2637946 -141148509 - MIR SINE MIR 0 262 19 219 222 0 0 chr12 2638220 2638265 -141148190 + CT-rich Low_complexity Low_complexity 3 47 0 805 104 0 17 chr12 2638608 2638723 -141147732 + AluSg/x SINE Alu 186 298 -12 293 239 85 46 chr12 2640208 2640338 -141146117 + MIR SINE MIR 74 208 -54 180 318 16 0 chr12 2640445 2640508 -141145947 + MIR3 SINE MIR 145 208 0 211 200 0 0 chr12 2641142 2641177 -141145278 + polypurine Low_complexity Low_complexity 3 37 0 582 306 116 36 chr12 2643526 2643915 -141142540 + L1MC5 LINE L1 7513 7932 -29 202 243 0 43 chr12 2644968 2645038 -141141417 + CT-rich Low_complexity Low_complexity 1 67 0 323 299 51 22 chr12 2645074 2645211 -141141244 + MER91A DNA MER1_type 55 195 -1 886 293 85 34 chr12 2645675 2646517 -141139938 - L2 LINE L2 -8 3305 2425 1747 226 67 7 chr12 2648252 2648686 -141137769 - MLT1C LTR MaLR -2 465 6 269 164 15 75 chr12 2648831 2648898 -141137557 - L2 LINE L2 -11 3261 3199 * 546 214 84 39 chr12 2648879 2649033 -141137422 - MIR SINE MIR -96 166 6 189 0 0 0 chr12 2649271 2649292 -141137163 + (T)n Simple_repeat Simple_repeat 1 21 0 440 217 0 12 chr12 2649473 2649556 -141136899 + MER81 DNA DNA 1 82 -32 306 363 62 27 chr12 2650068 2650324 -141136131 - L1MEd LINE L1 -4240 2070 1806 1014 305 65 42 chr12 2650383 2651400 -141135055 - L1MEd LINE L1 -4456 1673 622 271 258 0 16 chr12 2651679 2651741 -141134714 - L1MEd LINE L1 -6058 61 1 359 308 49 35 chr12 2651744 2651887 -141134568 + MIR SINE MIR 46 190 -72 367 337 148 12 chr12 2655927 2656096 -141130359 + L3 LINE CR1 1169 1360 -217 777 282 48 9 chr12 2657428 2657655 -141128800 - MIR SINE MIR -14 248 13 481 248 67 0 chr12 2657836 2657941 -141128514 + MER81 DNA DNA 2 113 -1 680 206 11 0 chr12 2658949 2659237 -141127218 + (TG)n Simple_repeat Simple_repeat 1 291 0 364 256 35 0 chr12 2659237 2659323 -141127132 - MER5B DNA MER1_type -79 99 11 288 302 58 38 chr12 2659407 2659589 -141126866 - MIR SINE MIR -46 216 35 268 404 0 0 chr12 2659694 2659798 -141126657 + MIR SINE MIR 33 136 -72 3883 141 33 11 chr12 2660294 2660932 -141125523 - MER39B LTR ERV1 -1 652 1 463 354 53 5 chr12 2661153 2661359 -141125096 - MIR SINE MIR -37 225 10 184 351 99 45 chr12 2662798 2663131 -141123324 + L2 LINE L2 2916 3266 -6 630 195 0 46 chr12 2664832 2665002 -141121453 - MIR SINE MIR -62 146 18 251 272 0 0 chr12 2665145 2665226 -141121229 + (CAT)n Simple_repeat Simple_repeat 2 82 0 203 284 54 40 chr12 2666036 2666110 -141120345 - L2 LINE L2 -616 2698 2624 2002 85 0 4 chr12 2666409 2666668 -141119787 + AluSx SINE Alu 1 258 -54 217 122 0 41 chr12 2667992 2668041 -141118414 + (GGAGA)n Simple_repeat Simple_repeat 1 47 0 390 305 79 42 chr12 2669770 2669960 -141116495 - MIR SINE MIR -52 210 14 607 273 36 16 chr12 2671877 2672126 -141114329 + L1M4 LINE L1 4357 4610 -1536 180 342 26 26 chr12 2676356 2676432 -141110023 - L2 LINE L2 -15 3298 3223 219 312 145 22 chr12 2676621 2676759 -141109696 - MIR SINE MIR -6 256 102 202 315 41 14 chr12 2676809 2676882 -141109573 - MIR SINE MIR -24 238 164 257 233 68 27 chr12 2677584 2677657 -141108798 - L3 LINE CR1 -171 1406 1331 495 296 292 17 chr12 2677736 2678507 -141107948 - L2 LINE L2 -101 3212 2218 225 352 14 35 chr12 2678805 2678947 -141107508 - L2 LINE L2 -467 2847 2709 324 308 85 46 chr12 2680771 2680901 -141105554 + MER20B DNA MER1_type 42 176 -607 461 238 89 83 chr12 2682148 2682236 -141104219 - MIR SINE MIR 0 262 171 1540 164 26 48 chr12 2682236 2682547 -141103908 + AluJo SINE Alu 1 304 -8 461 238 89 83 chr12 2682547 2682626 -141103829 - MIR SINE MIR -91 171 94 182 374 12 0 chr12 2683389 2683472 -141102983 + L2 LINE L2 3189 3272 0 1288 136 189 12 chr12 2685192 2685435 -141101020 + AluJo SINE Alu 1 286 -26 657 264 88 0 chr12 2686063 2686256 -141100199 - MIR SINE MIR -45 217 8 200 111 28 0 chr12 2687934 2687970 -141098485 + CT-rich Low_complexity Low_complexity 3 39 0 195 198 11 44 chr12 2690718 2690809 -141095646 + T-rich Low_complexity Low_complexity 2 89 0 215 298 0 40 chr12 2691013 2691137 -141095318 + T-rich Low_complexity Low_complexity 1 119 0 486 172 0 0 chr12 2692359 2692458 -141093997 + (TG)n Simple_repeat Simple_repeat 1 99 0 207 279 78 47 chr12 2693073 2693202 -141093253 - MIR SINE MIR -53 209 77 1008 279 147 44 chr12 2694561 2695597 -141090858 - L2 LINE L2 -2 3311 2104 305 294 154 7 chr12 2696071 2696214 -141090241 + MIR3 SINE MIR 38 201 -7 314 310 20 10 chr12 2696711 2696811 -141089644 - MIR SINE MIR -63 145 45 192 323 54 11 chr12 2697829 2697922 -141088533 - MIR SINE MIR -66 142 46 28 29 0 0 chr12 2701028 2701063 -141085392 + AT_rich Low_complexity Low_complexity 1 35 0 209 56 0 28 chr12 2702826 2702862 -141083593 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 330 26 0 0 chr12 2703304 2703319 -141083136 + (GA)n Simple_repeat Simple_repeat 1 54 0 330 26 0 0 chr12 2703319 2703358 -141083097 + (GA)n Simple_repeat Simple_repeat 1 39 0 1952 134 0 50 chr12 2704408 2704729 -141081726 + AluJo SINE Alu 1 305 -7 201 231 0 0 chr12 2707334 2707373 -141079082 + C-rich Low_complexity Low_complexity 3 41 0 660 231 65 0 chr12 2709741 2709910 -141076545 - MIR SINE MIR -34 228 49 206 200 0 0 chr12 2710901 2710936 -141075519 + polypurine Low_complexity Low_complexity 1 35 0 271 281 48 0 chr12 2712097 2712181 -141074274 + MIR SINE MIR 62 148 -74 6564 135 27 9 chr12 2712259 2713426 -141073029 + L1 LINE L1 3732 4919 -1227 448 326 30 33 chr12 2713422 2713726 -141072729 + HAL1 LINE L1 1445 1747 -760 * 477 247 84 59 chr12 2713991 2714230 -141072225 + L1MDa LINE L1 2315 2559 -3981 351 328 139 14 chr12 2714237 2714914 -141071541 + L1MDa LINE L1 2567 3423 -3117 6193 122 81 31 chr12 2714914 2716087 -141070368 + Tigger3b DNA MER2_type 1 1231 0 351 328 139 14 chr12 2716087 2716461 -141069994 + L1MDa LINE L1 3423 3749 -2791 2349 96 0 0 chr12 2717110 2717402 -141069053 + AluSg SINE Alu 1 292 -18 1675 195 0 14 chr12 2717544 2717831 -141068624 + AluJo SINE Alu 3 285 -27 417 39 0 0 chr12 2717831 2717882 -141068573 + (CA)n Simple_repeat Simple_repeat 2 52 0 529 344 98 17 chr12 2717903 2718261 -141068194 + L1MDa LINE L1 3704 4090 -2450 416 345 58 9 chr12 2718244 2718467 -141067988 + L1MDa LINE L1 4545 4778 -1762 * 506 324 100 28 chr12 2718453 2718527 -141067928 + L1ME4a LINE L1 4475 4542 -1998 2347 106 0 0 chr12 2718527 2718838 -141067617 + AluY SINE Alu 1 311 0 506 324 100 28 chr12 2718838 2719053 -141067402 + L1ME4a LINE L1 4542 4785 -1755 1210 299 39 25 chr12 2719061 2719807 -141066648 + L1ME4a LINE L1 4891 5646 -894 1988 113 0 0 chr12 2719823 2720114 -141066341 + L1PB2 LINE L1 5429 5719 -432 786 134 140 23 chr12 2720112 2720283 -141066172 + L1PB2 LINE L1 5960 6150 -1 * 2695 43 3 0 chr12 2720302 2720606 -141065849 - AluY SINE Alu -6 305 1 413 315 148 19 chr12 2720613 2721206 -141065249 + L1ME4a LINE L1 5657 6326 -238 2087 150 3 0 chr12 2722474 2722774 -141063681 + AluSx SINE Alu 1 301 -11 198 175 25 0 chr12 2723464 2723504 -141062951 + MIR3 SINE MIR 165 205 -3 2483 103 66 15 chr12 2725018 2725425 -141061030 - MSTA LTR MaLR 0 428 1 1403 77 101 0 chr12 2725813 2726022 -141060433 + MER30 DNA MER1_type 1 230 0 369 312 98 0 chr12 2726279 2726452 -141060003 + MER91A DNA MER1_type 4 193 -3 401 308 24 35 chr12 2726576 2726745 -141059710 + MER5A DNA MER1_type 2 168 -21 234 329 20 34 chr12 2726612 2726761 -141059694 - MER5A DNA MER1_type -27 162 16 * 235 345 86 2 chr12 2726853 2726980 -141059475 + MIR SINE MIR 16 152 -56 2258 103 17 0 chr12 2727145 2727445 -141059010 + AluSg SINE Alu 1 305 -5 2349 96 0 0 chr12 2727586 2727879 -141058576 - AluSc SINE Alu -16 293 1 266 284 116 13 chr12 2727892 2728047 -141058408 + L1ME4a LINE L1 6326 6496 -19 1720 226 82 5 chr12 2728949 2729378 -141057077 - MLT1C LTR MaLR 0 467 6 237 185 111 0 chr12 2729610 2729664 -141056791 - MIR SINE MIR -201 61 2 996 218 223 47 chr12 2729694 2729760 -141056695 - MLT1E3 LTR MaLR -1 623 570 2277 93 34 0 chr12 2729760 2730051 -141056404 + AluSp SINE Alu 1 301 -12 996 218 223 47 chr12 2730051 2730393 -141056062 - MLT1E3 LTR MaLR -54 570 143 253 284 0 73 chr12 2730849 2730990 -141055465 + G-rich Low_complexity Low_complexity 1 130 0 754 209 115 13 chr12 2731654 2731888 -141054567 - MER20B DNA MER1_type 0 783 526 996 274 150 19 chr12 2732046 2732514 -141053941 - MER20B DNA MER1_type -253 530 2 337 316 184 0 chr12 2732571 2732707 -141053748 - MIR SINE MIR -56 206 46 404 276 164 51 chr12 2733281 2733556 -141052899 + L1MC4a LINE L1 5862 6167 -1641 559 265 12 35 chr12 2734791 2734961 -141051494 + Charlie8 DNA MER1_type 115 280 -2137 303 242 0 0 chr12 2737860 2737922 -141048533 + MIR SINE MIR 195 256 -6 190 252 122 89 chr12 2738762 2738885 -141047570 - MIR SINE MIR -92 170 44 261 300 0 0 chr12 2738973 2739043 -141047412 + (TG)n Simple_repeat Simple_repeat 1 70 0 1356 78 16 3 chr12 2739417 2740162 -141046293 + (CA)n Simple_repeat Simple_repeat 1 754 0 3923 280 50 22 chr12 2740221 2741549 -141044906 + ERVL LTR ERVL 3074 4438 -1326 751 169 21 69 chr12 2741705 2741894 -141044561 + LTR41 LTR ERVL 1 180 -593 394 227 171 11 chr12 2742105 2742281 -141044174 + LTR50 LTR ERVL 590 793 -2 183 239 130 0 chr12 2742298 2742344 -141044111 + L2 LINE L2 2928 2979 -334 281 277 0 15 chr12 2742667 2742732 -141043723 - L2 LINE L2 -11 3302 3239 241 328 74 25 chr12 2742892 2743014 -141043441 + MER91A DNA MER1_type 1 128 -68 1802 256 67 53 chr12 2743386 2743604 -141042851 - MLT1E LTR MaLR 0 593 379 2026 116 7 7 chr12 2743604 2743897 -141042558 + AluSq SINE Alu 1 293 -20 1802 256 67 53 chr12 2743897 2744263 -141042192 - MLT1E LTR MaLR -214 379 1 183 263 35 18 chr12 2744496 2744553 -141041902 - L3b LINE CR1 -185 1398 1341 808 107 43 11 chr12 2745921 2746372 -141040083 + (CA)n Simple_repeat Simple_repeat 1 465 0 292 284 26 17 chr12 2746432 2746548 -141039907 + MER112 DNA MER1_type 1 117 -143 369 336 37 29 chr12 2746622 2746866 -141039589 - MER112 DNA MER1_type -7 253 8 213 311 0 40 chr12 2746967 2747041 -141039414 - MIR SINE MIR -81 181 111 240 262 0 0 chr12 2747730 2747789 -141038666 + MIR SINE MIR 94 153 -55 2289 83 3 0 chr12 2751007 2751307 -141035148 - AluSp SINE Alu -12 301 1 192 118 29 29 chr12 2751563 2751597 -141034858 + L3b LINE CR1 1293 1326 -257 292 198 430 0 chr12 2752567 2752688 -141033767 - MER5B DNA MER1_type -4 174 2 909 274 177 25 chr12 2752689 2753175 -141033280 + L3 LINE CR1 1010 1569 -8 652 235 88 14 chr12 2753190 2753407 -141033048 - L2 LINE L2 -3 3310 3078 1542 183 3 13 chr12 2753795 2754101 -141032354 - AluJo SINE Alu -9 303 1 23 33 0 0 chr12 2754928 2754958 -141031497 + GC_rich Low_complexity Low_complexity 1 30 0 1446 123 18 31 chr12 2761922 2762150 -141024305 + L1M4c LINE L1 19 243 -6141 3861 160 54 9 chr12 2762281 2762981 -141023474 + L1M4c LINE L1 249 980 -5404 * 45728 32 3 1 chr12 2762966 2769111 -141017344 + L1PA4 LINE L1 2 6155 0 10623 203 30 12 chr12 2769124 2773377 -141013078 + L1M4c LINE L1 947 5282 -1100 838 122 0 8 chr12 2773372 2773503 -141012952 + L1MB3 LINE L1 5818 5947 -224 * 501 145 226 8 chr12 2773510 2773634 -141012821 + L1MB3 LINE L1 6032 6182 -1 403 307 6 61 chr12 2774964 2775428 -141011027 + MER5A DNA MER1_type 8 161 -28 2173 109 0 0 chr12 2775006 2775308 -141011147 + AluSg SINE Alu 1 302 -8 200 300 87 47 chr12 2775308 2775450 -141011005 - MER5B DNA MER1_type -27 151 1 734 289 32 40 chr12 2776481 2776758 -141009697 + L2 LINE L2 2635 2909 -405 679 228 23 84 chr12 2776776 2776991 -141009464 + LTR41 LTR ERVL 1 202 -571 387 221 154 40 chr12 2777273 2777422 -141009033 + LTR41 LTR ERVL 605 770 -3 473 362 22 13 chr12 2777822 2778051 -141008404 + ERVL LTR ERVL 461 691 -5073 204 125 0 0 chr12 2778276 2778308 -141008147 + (TG)n Simple_repeat Simple_repeat 1 32 0 2014 146 50 20 chr12 2778323 2778373 -141008082 + THE1C LTR MaLR 8 55 -320 2293 83 0 3 chr12 2778373 2778675 -141007780 - AluSq SINE Alu -12 301 1 2014 146 50 20 chr12 2778675 2778981 -141007474 + THE1C LTR MaLR 55 375 0 235 250 0 29 chr12 2778981 2779049 -141007406 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 5921 196 21 114 chr12 2779050 2779845 -141006610 + L1 LINE L1 2679 3547 -2599 2211 102 0 0 chr12 2779845 2780140 -141006315 + AluSg SINE Alu 3 297 -13 5921 196 21 114 chr12 2780140 2780634 -141005821 + L1 LINE L1 3547 4086 -2060 1063 153 0 0 chr12 2780634 2780804 -141005651 + AluSg/x SINE Alu 135 304 -8 5921 196 21 114 chr12 2780804 2781313 -141005142 + L1 LINE L1 4086 4462 -1684 4218 142 41 1 chr12 2781313 2782023 -141004432 + L1PA16 LINE L1 5412 6149 -17 5921 196 21 114 chr12 2782023 2782040 -141004415 + L1 LINE L1 4462 4479 -1667 3638 321 40 7 chr12 2782070 2783255 -141003200 + ERVL LTR ERVL 1758 2985 -2779 951 117 0 0 chr12 2783255 2783435 -141003020 + (CA)n Simple_repeat Simple_repeat 1 180 0 3638 321 40 7 chr12 2783435 2783453 -141003002 + ERVL LTR ERVL 2985 3001 -2763 924 135 0 0 chr12 2783453 2783901 -141002554 + (CA)n Simple_repeat Simple_repeat 1 448 0 377 88 0 15 chr12 2783914 2783982 -141002473 + (CA)n Simple_repeat Simple_repeat 2 68 0 335 266 175 28 chr12 2784598 2784741 -141001714 + MIR3 SINE MIR 38 201 -7 1352 142 145 14 chr12 2985567 2985856 -140800599 - L1 LINE L1 -2363 3783 3457 257 298 11 43 chr12 2985864 2985958 -140800497 + L2 LINE L2 3000 3090 -182 704 232 24 68 chr12 2986134 2986341 -140800114 - MER58A DNA MER1_type 0 224 27 1330 178 22 0 chr12 2986361 2986630 -140799825 + L1MA4 LINE L1 6016 6290 -10 23 0 0 0 chr12 2986630 2986653 -140799802 + AT_rich Low_complexity Low_complexity 1 23 0 259 256 79 43 chr12 2986791 2986955 -140799500 + L1ME4a LINE L1 5935 6104 -17 810 111 8 0 chr12 2987372 2987489 -140798966 + FLAM_C SINE Alu 1 118 -15 2342 83 3 0 chr12 2987526 2987815 -140798640 + AluY SINE Alu 1 290 -21 942 57 0 0 chr12 2987823 2987945 -140798510 + HERVK9 LTR ERVK 5634 5755 -161 1046 59 15 0 chr12 2987946 2988081 -140798374 - MER9 LTR ERVK -374 137 1 476 172 108 0 chr12 2988082 2988175 -140798280 - AluSg SINE Alu -206 104 2 1017 214 10 0 chr12 2988177 2988383 -140798072 + L1MB8 LINE L1 5354 5561 -617 986 68 7 103 chr12 2988383 2988529 -140797926 + AluSq/x SINE Alu 1 132 -180 1264 105 6 0 chr12 2989062 2989248 -140797207 + AluSp SINE Alu 121 307 0 2421 199 38 25 chr12 2989248 2989807 -140796648 + L1MB8 LINE L1 5554 6119 -59 1282 182 0 0 chr12 2989809 2990018 -140796437 + AluJo SINE Alu 7 215 -97 2048 120 18 0 chr12 2990260 2990544 -140795911 - AluSx SINE Alu -23 289 1 577 216 8 24 chr12 2991343 2991468 -140794987 + MER2 DNA MER2_type 1 123 -222 3261 92 6 32 chr12 2991684 2992186 -140794269 - LTR22B LTR ERVK -3 489 1 207 0 0 0 chr12 2992777 2992800 -140793655 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2463 93 0 0 chr12 2992838 2993138 -140793317 + AluSp SINE Alu 1 300 -13 420 234 0 43 chr12 2993438 2993532 -140792923 - L1MC4 LINE L1 -1339 6703 6614 329 275 25 0 chr12 2993476 2993556 -140792899 + L1MC3 LINE L1 6571 6652 -1133 * 2169 115 7 0 chr12 2993632 2993920 -140792535 + AluSx SINE Alu 1 290 -22 2740 264 39 11 chr12 2994221 2994281 -140792174 + L1ME3 LINE L1 5173 5230 -932 243 0 0 0 chr12 2994281 2994308 -140792147 + (TG)n Simple_repeat Simple_repeat 2 28 0 2740 264 39 11 chr12 2994308 2994370 -140792085 + L1ME3 LINE L1 5230 5289 -873 2567 73 0 10 chr12 2994370 2994684 -140791771 - AluSx SINE Alu -1 311 1 2740 264 39 11 chr12 2994684 2995488 -140790967 + L1ME3 LINE L1 5289 6131 -31 245 227 82 41 chr12 2995655 2995752 -140790703 + L2 LINE L2 3198 3298 -15 928 128 0 0 chr12 2996613 2996738 -140789717 - FLAM_C SINE Alu -18 125 1 2021 134 14 7 chr12 2997291 2997583 -140788872 + AluJb SINE Alu 3 296 -16 332 292 129 67 chr12 2997649 2997696 -140788759 - MIR SINE MIR -29 233 190 1614 162 27 34 chr12 2997696 2997993 -140788462 + AluJb SINE Alu 2 296 -16 332 292 129 67 chr12 2997993 2998123 -140788332 - MIR SINE MIR -72 190 45 2588 71 0 0 chr12 2998297 2998608 -140787847 + AluY SINE Alu 1 311 0 272 329 87 14 chr12 2999533 2999740 -140786715 - MIR SINE MIR -35 227 6 1333 93 6 0 chr12 3000306 3000478 -140785977 + AluSq SINE Alu 1 173 -140 502 94 0 0 chr12 3000478 3000563 -140785892 + AluJ/FRAM SINE Alu 224 308 -4 192 276 92 13 chr12 3000601 3000677 -140785778 - L2 LINE L2 -4 3309 3228 186 43 0 0 chr12 3001432 3001455 -140785000 + (A)n Simple_repeat Simple_repeat 1 23 0 31 58 0 0 chr12 3001919 3001971 -140784484 + GC_rich Low_complexity Low_complexity 1 52 0 30 93 0 0 chr12 3002178 3002264 -140784191 + GC_rich Low_complexity Low_complexity 1 86 0 28 61 0 0 chr12 3002501 3002550 -140783905 + GC_rich Low_complexity Low_complexity 1 49 0 205 267 144 0 chr12 3003428 3003518 -140782937 - MIR SINE MIR -66 196 94 355 297 40 20 chr12 3005469 3005617 -140780838 + MIR3 SINE MIR 37 187 -21 180 297 55 55 chr12 3006130 3006258 -140780197 - L2 LINE L2 0 3272 3145 700 228 6 6 chr12 3008248 3008406 -140778049 + FRAM SINE Alu 1 158 -18 386 319 32 27 chr12 3008576 3008761 -140777694 - L1MC4a LINE L1 -1871 5937 5752 2319 100 13 0 chr12 3008774 3009074 -140777381 - AluSq SINE Alu -9 304 1 367 191 142 53 chr12 3009096 3009305 -140777150 - Charlie5 DNA MER1_type -27 2585 3 2018 152 0 7 chr12 3009366 3009668 -140776787 - AluJb SINE Alu -12 300 1 437 216 0 39 chr12 3011463 3011565 -140774890 + AluJb SINE Alu 191 288 -24 334 286 71 26 chr12 3011683 3011837 -140774618 - MIR SINE MIR 0 262 102 244 185 283 22 chr12 3011882 3011974 -140774481 + MIR3 SINE MIR 90 205 -3 215 295 186 38 chr12 3012338 3012575 -140773880 + L2 LINE L2 2546 2817 -497 945 162 6 39 chr12 3013066 3013080 -140773375 - AluJb SINE Alu -3 309 296 2250 123 10 0 chr12 3013080 3013382 -140773073 - AluSx SINE Alu -7 305 1 945 162 6 39 chr12 3013382 3013396 -140773059 - AluJb SINE Alu -16 296 283 213 65 0 0 chr12 3013396 3013427 -140773028 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 945 162 6 39 chr12 3013427 3013576 -140772879 - AluJb SINE Alu -29 283 137 2243 124 0 0 chr12 3013576 3013875 -140772580 - AluSq SINE Alu -14 299 1 310 183 157 78 chr12 3014063 3014178 -140772277 - L1MB5 LINE L1 -9 6165 6042 2416 83 0 32 chr12 3014684 3014998 -140771457 + AluY SINE Alu 1 304 -7 1996 96 37 0 chr12 3015468 3015738 -140770717 + AluSq SINE Alu 21 300 -13 2456 88 3 0 chr12 3015738 3016043 -140770412 + AluY SINE Alu 1 306 -5 2364 94 7 10 chr12 3016296 3016605 -140769850 + AluSg SINE Alu 1 308 -2 1904 178 7 0 chr12 3016622 3016925 -140769530 - AluSx SINE Alu -7 305 1 832 153 108 0 chr12 3017368 3017525 -140768930 + AluSg/x SINE Alu 136 309 -3 2466 65 0 46 chr12 3017527 3017668 -140768787 + AluSc SINE Alu 1 147 -162 2447 58 0 3 chr12 3017668 3017961 -140768494 + AluY SINE Alu 1 292 -19 207 0 0 0 chr12 3017961 3017984 -140768471 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2466 65 0 46 chr12 3017984 3018165 -140768290 + AluSc SINE Alu 145 309 0 530 194 114 55 chr12 3018733 3018970 -140767485 + MER112 DNA MER1_type 3 253 -7 1478 108 10 0 chr12 3019682 3019886 -140766569 - AluSg/x SINE Alu -15 295 90 277 122 0 0 chr12 3019886 3019927 -140766528 - Alu SINE Alu -261 41 1 290 230 0 27 chr12 3019938 3020012 -140766443 + MIR SINE MIR 184 255 -7 281 348 51 8 chr12 3020038 3020156 -140766299 - L2 LINE L2 0 3272 3150 1827 180 0 3 chr12 3020585 3020885 -140765570 - AluJo SINE Alu -13 299 1 286 269 55 71 chr12 3021047 3021188 -140765267 + L2 LINE L2 3130 3269 -44 2119 157 0 6 chr12 3021188 3021501 -140764954 + AluJb SINE Alu 1 311 -1 286 269 55 71 chr12 3021501 3021541 -140764914 + L2 LINE L2 3269 3308 -5 1174 102 0 30 chr12 3021617 3021783 -140764672 - AluSq SINE Alu -16 297 137 1788 170 0 50 chr12 3022504 3022672 -140763783 - AluJo SINE Alu -11 301 126 2436 87 3 0 chr12 3022672 3022971 -140763484 - AluSx SINE Alu -12 300 1 2525 81 0 0 chr12 3022971 3023269 -140763186 - AluY SINE Alu -13 298 1 2049 151 0 22 chr12 3023269 3023586 -140762869 - AluJb SINE Alu -2 310 1 1788 170 0 50 chr12 3023586 3023732 -140762723 - AluJo SINE Alu -183 129 1 323 339 9 9 chr12 3025012 3025127 -140761328 - L2 LINE L2 0 3313 3199 746 214 37 21 chr12 3025137 3025324 -140761131 + AluJo SINE Alu 118 307 -5 2048 138 24 0 chr12 3025376 3025672 -140760783 + AluSq SINE Alu 1 303 -10 2002 121 13 49 chr12 3025676 3025823 -140760632 + AluSx SINE Alu 1 133 -179 2400 77 0 13 chr12 3025823 3026122 -140760333 + AluY SINE Alu 1 295 -16 2002 121 13 49 chr12 3026122 3026280 -140760175 + AluSx SINE Alu 133 295 -17 267 279 54 0 chr12 3026284 3026395 -140760060 - L2 LINE L2 -175 3138 3022 203 103 26 0 chr12 3027258 3027297 -140759158 + C-rich Low_complexity Low_complexity 2 41 0 1676 191 30 10 chr12 3028558 3028862 -140757593 - AluJo SINE Alu -2 310 1 469 245 129 0 chr12 3029169 3029308 -140757147 + MIR SINE MIR 36 192 -70 692 182 186 23 chr12 3031617 3031837 -140754618 - MER112 DNA MER1_type 0 256 1 2011 163 0 3 chr12 3032404 3032704 -140753751 - AluSx SINE Alu -13 299 1 424 136 0 0 chr12 3034878 3034944 -140751511 - L1MB7 LINE L1 -98 6086 6021 2430 76 3 10 chr12 3035198 3035499 -140750956 + AluSp SINE Alu 1 299 -14 829 146 51 22 chr12 3035565 3035702 -140750753 + FLAM_C SINE Alu 1 141 -2 1646 167 41 31 chr12 3036130 3036423 -140750032 + AluJb SINE Alu 3 298 -14 2232 105 3 0 chr12 3036440 3036725 -140749730 + AluSx SINE Alu 5 290 -22 230 262 71 56 chr12 3036798 3036924 -140749531 - L2 LINE L2 -213 3059 2932 2218 147 0 0 chr12 3037942 3038249 -140748206 + AluSx SINE Alu 1 307 -5 204 192 0 58 chr12 3038369 3038403 -140748052 + CT-rich Low_complexity Low_complexity 4 36 -16 638 241 0 0 chr12 3038403 3038536 -140747919 - FLAM_A SINE Alu 0 133 1 204 192 0 58 chr12 3038536 3038553 -140747902 + CT-rich Low_complexity Low_complexity 36 52 0 401 250 264 0 chr12 3038696 3038836 -140747619 + MER5A DNA MER1_type 11 187 -2 256 293 151 82 chr12 3039191 3039423 -140747032 + L2 LINE L2 3023 3270 -2 804 221 103 0 chr12 3040373 3040586 -140745869 - MIR SINE MIR 0 262 28 294 29 0 0 chr12 3041797 3041832 -140744623 + (TG)n Simple_repeat Simple_repeat 1 35 0 186 103 0 0 chr12 3041832 3041861 -140744594 + (GA)n Simple_repeat Simple_repeat 2 30 0 821 265 108 42 chr12 3042518 3042926 -140743529 - L1ME3A LINE L1 -260 5910 5476 2137 182 44 22 chr12 3043222 3043679 -140742776 + MLT1C LTR MaLR 1 467 0 2272 93 0 52 chr12 3043696 3043836 -140742619 + AluSq SINE Alu 7 153 -160 2595 34 0 3 chr12 3043836 3044128 -140742327 + AluY SINE Alu 1 291 -20 2272 93 0 52 chr12 3044128 3044311 -140742144 + AluSq SINE Alu 153 313 0 1205 144 0 0 chr12 3044315 3044482 -140741973 + FRAM SINE Alu 1 159 -17 2097 141 3 0 chr12 3045650 3045940 -140740515 + AluSx SINE Alu 1 291 -21 737 212 71 16 chr12 3046204 3046388 -140740067 - L2 LINE L2 -1 3312 3119 1959 169 19 0 chr12 3046388 3046760 -140739695 + L1PA16 LINE L1 5787 6165 -1 235 191 21 149 chr12 3046761 3046807 -140739648 + L1M4 LINE L1 4505 4555 -1591 2270 92 0 23 chr12 3046807 3047110 -140739345 + AluSx SINE Alu 1 296 -16 235 191 21 149 chr12 3047110 3047161 -140739294 + L1M4 LINE L1 4555 4581 -1565 2418 60 0 0 chr12 3047161 3047443 -140739012 + AluY SINE Alu 17 298 -13 235 191 21 149 chr12 3047443 3047485 -140738970 + L1M4 LINE L1 4581 4627 -1519 820 160 33 149 chr12 3048184 3048360 -140738095 + MER33 DNA MER1_type 5 200 -2385 2346 91 0 3 chr12 3048360 3048657 -140737798 - AluSc SINE Alu -13 296 1 820 160 33 149 chr12 3048657 3048754 -140737701 + MER33 DNA MER1_type 200 307 -2278 2394 94 0 7 chr12 3048754 3049061 -140737394 - AluSc SINE Alu -4 305 1 820 160 33 149 chr12 3049061 3049100 -140737355 + MER33 DNA MER1_type 307 274 -2311 1802 158 34 0 chr12 3049100 3049391 -140737064 + AluJb SINE Alu 1 301 -11 820 160 33 149 chr12 3049391 3049438 -140737017 + MER33 DNA MER1_type 273 324 0 367 339 103 21 chr12 3049442 3049675 -140736780 - L3b LINE CR1 -140 1443 1192 233 298 18 0 chr12 3050042 3050099 -140736356 - MIR SINE MIR -109 153 96 2316 106 0 0 chr12 3050171 3050464 -140735991 + AluSx SINE Alu 1 293 -19 423 260 63 8 chr12 3050465 3050592 -140735863 + MIR SINE MIR 59 192 -70 1861 139 27 14 chr12 3050618 3050912 -140735543 + AluJb SINE Alu 1 298 -14 2032 154 0 0 chr12 3050912 3051204 -140735251 + AluSx SINE Alu 1 292 -20 816 154 0 0 chr12 3052509 3052639 -140733816 - FLAM_A SINE Alu -1 132 3 350 281 50 0 chr12 3053145 3053266 -140733189 + MIR3 SINE MIR 78 204 -4 923 208 60 1 chr12 3053525 3053824 -140732631 - L1MB7 LINE L1 -2 6169 5833 1711 153 5 83 chr12 3053838 3054017 -140732438 - L1MB4 LINE L1 -2 6178 5986 2279 76 10 30 chr12 3054017 3054321 -140732134 + AluY SINE Alu 1 298 -13 1711 153 5 83 chr12 3054321 3054560 -140731895 - L1MB4 LINE L1 -194 5986 5793 359 272 53 27 chr12 3054601 3054807 -140731648 - MIR SINE MIR -12 250 33 396 40 0 0 chr12 3055503 3055553 -140730902 + (CA)n Simple_repeat Simple_repeat 2 51 0 265 250 68 119 chr12 3056695 3056834 -140729621 - MER5B DNA MER1_type 0 178 48 2359 83 7 13 chr12 3056834 3057136 -140729319 + AluSg SINE Alu 1 300 -10 265 250 68 119 chr12 3057136 3057172 -140729283 - MER5B DNA MER1_type -130 48 12 2165 107 7 4 chr12 3057294 3057612 -140728843 - AluSx SINE Alu 0 319 1 216 0 0 0 chr12 3057619 3057643 -140728812 + (T)n Simple_repeat Simple_repeat 1 24 0 1146 108 25 0 chr12 3057658 3057815 -140728640 + AluSp SINE Alu 134 294 -19 1130 126 133 96 chr12 3057830 3057878 -140728577 - MER7C DNA MER2_type -2723 305 260 218 81 27 0 chr12 3057878 3057915 -140728540 + (TGAG)n Simple_repeat Simple_repeat 1 38 0 1130 126 133 96 chr12 3057915 3057984 -140728471 - MER7C DNA MER2_type -2768 260 195 2096 127 0 3 chr12 3057984 3058283 -140728172 - AluSx SINE Alu -14 298 1 195 48 48 24 chr12 3058289 3058331 -140728124 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2193 114 0 0 chr12 3058338 3058619 -140727836 - AluSx SINE Alu -31 281 1 1130 126 133 96 chr12 3058619 3058778 -140727677 - MER7C DNA MER2_type -2842 186 2 249 298 12 0 chr12 3058845 3058929 -140727526 - L2 LINE L2 -51 3262 3178 321 192 70 109 chr12 3058997 3059010 -140727445 + MIR SINE MIR 80 92 -170 1765 169 14 7 chr12 3059010 3059305 -140727150 - AluJo SINE Alu -15 297 1 321 192 70 109 chr12 3059305 3059363 -140727092 + MIR SINE MIR 92 151 -111 2215 96 23 7 chr12 3059363 3059666 -140726789 + AluSx SINE Alu 1 308 -4 321 192 70 109 chr12 3059666 3059749 -140726706 + MIR SINE MIR 151 229 -33 2466 74 10 0 chr12 3059916 3060213 -140726242 - AluSq SINE Alu -13 300 1 306 67 0 0 chr12 3060218 3060263 -140726192 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 2227 99 3 0 chr12 3060671 3060965 -140725490 - AluSp SINE Alu -18 295 1 223 288 85 25 chr12 3060980 3061098 -140725357 - MIR SINE MIR -44 218 94 205 258 118 0 chr12 3061250 3061343 -140725112 + L2 LINE L2 3160 3263 -9 451 288 162 21 chr12 3062724 3062915 -140723540 - MIR SINE MIR -43 219 2 2206 103 10 3 chr12 3063011 3063303 -140723152 - AluSq SINE Alu -19 294 1 489 348 14 43 chr12 3066510 3066589 -140719866 + L1ME4a LINE L1 4932 5012 -1134 431 134 134 0 chr12 3066589 3066671 -140719784 + HY4 scRNA scRNA 1 93 0 489 348 14 43 chr12 3066671 3066873 -140719582 + L1ME4a LINE L1 5012 5205 -941 1364 183 77 18 chr12 3066879 3067152 -140719303 + AluJb SINE Alu 19 307 -5 2292 84 31 0 chr12 3067232 3067519 -140718936 + AluSx SINE Alu 1 296 -16 2430 81 0 3 chr12 3067527 3067823 -140718632 + AluSg SINE Alu 1 295 -15 718 318 65 31 chr12 3067844 3067972 -140718483 + L1ME4a LINE L1 5305 5427 -735 701 72 0 0 chr12 3067972 3068069 -140718386 + L1PB1 LINE L1 6054 6150 -1 718 318 65 31 chr12 3068069 3068539 -140717916 + L1ME4a LINE L1 5427 5887 -275 2440 93 0 0 chr12 3068539 3068839 -140717616 + AluSg SINE Alu 1 300 -10 718 318 65 31 chr12 3068839 3068876 -140717579 + L1ME4a LINE L1 5887 5921 -241 23 39 0 39 chr12 3069158 3069182 -140717273 + AT_rich Low_complexity Low_complexity 1 24 -26 1679 187 0 37 chr12 3069182 3069482 -140716973 - AluJo SINE Alu -23 289 1 23 39 0 39 chr12 3069482 3069509 -140716946 + AT_rich Low_complexity Low_complexity 24 50 0 902 171 51 37 chr12 3069701 3069917 -140716538 + MER20 DNA MER1_type 1 219 0 1829 157 10 23 chr12 3070030 3070335 -140716120 - AluJo SINE Alu -11 301 1 2290 93 20 3 chr12 3070345 3070645 -140715810 - AluSg SINE Alu -5 305 1 2537 88 0 0 chr12 3072284 3072592 -140713863 - AluSp SINE Alu -4 309 2 363 294 52 15 chr12 3072618 3072754 -140713701 - MER5A DNA MER1_type -6 183 43 * 511 282 20 13 chr12 3072636 3072785 -140713670 + MER5A DNA MER1_type 40 189 0 2179 137 0 0 chr12 3073511 3073811 -140712644 + AluSx SINE Alu 1 300 -12 1299 169 118 32 chr12 3073823 3074102 -140712353 + AluJb SINE Alu 1 303 -9 1495 36 0 0 chr12 3074151 3074316 -140712139 + AluY SINE Alu 131 295 -16 2430 84 3 16 chr12 3074334 3074644 -140711811 + AluSx SINE Alu 1 306 -6 243 246 53 0 chr12 3075529 3075586 -140710869 - MIR3 SINE MIR -3 205 146 184 320 0 0 chr12 3075743 3075793 -140710662 + MIR SINE MIR 37 86 -122 1732 154 3 63 chr12 3075911 3076077 -140710378 - AluJb SINE Alu -13 299 159 2370 94 3 7 chr12 3076077 3076376 -140710079 - AluSq SINE Alu -14 299 2 1732 154 3 63 chr12 3076376 3076527 -140709928 - AluJb SINE Alu -153 159 1 332 225 67 34 chr12 3076536 3076625 -140709830 - L1ME3 LINE L1 -1 6161 6070 1992 138 52 0 chr12 3076626 3076916 -140709539 - AluSp SINE Alu -8 305 1 1874 120 3 46 chr12 3076940 3077023 -140709432 + L1PA15 LINE L1 5854 5939 -226 2366 88 0 0 chr12 3077023 3077317 -140709138 + AluSc SINE Alu 1 294 -15 2371 92 3 0 chr12 3077319 3077623 -140708832 + AluSg SINE Alu 1 305 -5 1874 120 3 46 chr12 3077623 3077862 -140708593 + L1PA15 LINE L1 5940 6165 0 2021 124 7 20 chr12 3078006 3078304 -140708151 + AluJb SINE Alu 1 294 -18 188 320 98 52 chr12 3078458 3078611 -140707844 - L2 LINE L2 -15 3257 3098 2264 106 30 0 chr12 3078968 3079269 -140707186 + AluSx SINE Alu 1 310 -2 1253 182 0 10 chr12 3079495 3079704 -140706751 + AluJo SINE Alu 86 292 -20 2383 112 0 3 chr12 3079756 3080068 -140706387 + AluSx SINE Alu 1 311 -1 667 167 0 0 chr12 3080072 3080186 -140706269 + FLAM_C SINE Alu 2 115 -18 2243 101 13 7 chr12 3080210 3080518 -140705937 - AluSx SINE Alu -2 310 1 2467 97 0 0 chr12 3081623 3081933 -140704522 - AluSx SINE Alu -2 310 1 360 174 14 0 chr12 3082082 3082151 -140704304 - MER91C DNA MER1_type -8 132 63 1828 91 20 20 chr12 3082392 3082644 -140703811 - AluSq SINE Alu -4 309 58 1966 81 18 15 chr12 3132644 3132916 -140653539 - AluSq SINE Alu -40 273 1 22 88 0 0 chr12 3133856 3133913 -140652542 + GC_rich Low_complexity Low_complexity 1 57 0 358 243 72 79 chr12 3134593 3134745 -140651710 - L2 LINE L2 0 3272 3122 1806 133 31 0 chr12 3134754 3135040 -140651415 + AluJb SINE Alu 1 295 -17 329 296 124 94 chr12 3135193 3135791 -140650664 - L2 LINE L2 -350 2964 2349 1725 187 0 13 chr12 3135844 3136159 -140650296 - AluJb SINE Alu -1 311 1 1881 150 0 7 chr12 3136183 3136489 -140649966 - AluJb SINE Alu -8 304 1 312 321 98 10 chr12 3136489 3136682 -140649773 - L2 LINE L2 -964 2350 2141 * 385 274 120 101 chr12 3136661 3136889 -140649566 - L2 LINE L2 -1737 1577 1355 1498 163 71 27 chr12 3136889 3137184 -140649271 + AluJo SINE Alu 1 308 -4 2101 95 14 3 chr12 3137190 3137486 -140648969 + AluSx SINE Alu 1 299 -13 1711 166 7 17 chr12 3137493 3137794 -140648661 - AluJo SINE Alu -14 298 1 385 274 120 101 chr12 3137794 3137908 -140648547 - L2 LINE L2 -1968 1346 1213 2078 120 0 0 chr12 3137957 3138258 -140648197 - AluSx SINE Alu -11 301 1 651 228 37 15 chr12 3138269 3138405 -140648050 + L2 LINE L2 3175 3313 0 2211 105 7 0 chr12 3138480 3138784 -140647671 + AluSg SINE Alu 1 306 -4 210 243 54 40 chr12 3138934 3139008 -140647447 + L2 LINE L2 1820 1894 -1420 806 134 0 0 chr12 3139015 3139134 -140647321 + FLAM_C SINE Alu 1 119 -24 342 0 0 0 chr12 3139134 3139172 -140647283 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1776 155 0 13 chr12 3139272 3139582 -140646873 + AluSx SINE Alu 1 306 -6 203 283 0 0 chr12 3139609 3139655 -140646800 - L2 LINE L2 -239 3074 3029 1525 177 3 25 chr12 3139658 3139941 -140646514 + AluJo SINE Alu 25 301 -11 1715 172 14 0 chr12 3139956 3140252 -140646203 + AluJb SINE Alu 5 304 -8 324 0 0 0 chr12 3140332 3140368 -140646087 + (TA)n Simple_repeat Simple_repeat 2 37 0 2456 50 7 0 chr12 3140368 3140671 -140645784 - AluSp SINE Alu -8 305 1 462 272 20 20 chr12 3140677 3140824 -140645631 + L1MC5 LINE L1 7763 7909 -52 189 74 0 0 chr12 3140906 3140933 -140645522 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1989 93 3 34 chr12 3140935 3141088 -140645367 - AluSx SINE Alu -30 282 126 180 0 0 0 chr12 3141088 3141108 -140645347 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1829 131 25 0 chr12 3141108 3141382 -140645073 - AluSx SINE Alu -31 281 1 1989 93 3 34 chr12 3141382 3141518 -140644937 - AluSx SINE Alu -184 128 1 344 308 156 113 chr12 3141564 3141980 -140644475 + L2 LINE L2 2836 3269 -3 2558 48 0 3 chr12 3142418 3142730 -140643725 - AluY SINE Alu 0 311 1 2040 127 3 19 chr12 3143224 3143539 -140642916 + AluJb SINE Alu 1 310 -2 207 314 0 0 chr12 3143722 3143773 -140642682 - MIR SINE MIR 0 262 212 411 194 86 11 chr12 3143805 3143898 -140642557 - L2 LINE L2 -18 3254 3155 1828 157 3 7 chr12 3143916 3144051 -140642404 + AluSx SINE Alu 1 135 -177 2013 134 3 0 chr12 3144051 3144356 -140642099 + AluSq SINE Alu 1 306 -7 1828 157 3 7 chr12 3144356 3144519 -140641936 + AluSx SINE Alu 135 298 -14 290 241 17 0 chr12 3144559 3144617 -140641838 - MIR SINE MIR -60 148 90 1707 129 4 7 chr12 3145384 3145655 -140640800 - AluSq SINE Alu -13 300 31 193 224 233 17 chr12 3146412 3146528 -140639927 - MIR SINE MIR -88 174 34 1734 124 7 7 chr12 3146818 3147093 -140639362 + AluSx SINE Alu 14 288 -24 1221 165 30 66 chr12 3148626 3148750 -140637705 + AluJo SINE Alu 1 128 -184 180 0 0 0 chr12 3148750 3148770 -140637685 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1221 165 30 66 chr12 3148770 3148948 -140637507 + AluJo SINE Alu 128 292 -20 2293 83 0 0 chr12 3149364 3149665 -140636790 - AluSc SINE Alu -8 301 1 1546 163 29 10 chr12 3149712 3150018 -140636437 - AluJb SINE Alu 0 312 1 2014 92 28 0 chr12 3150183 3150466 -140635989 - AluSp SINE Alu -12 301 11 901 126 7 0 chr12 3150664 3150799 -140635656 - AluJo SINE Alu -176 136 1 1807 112 3 70 chr12 3151087 3151394 -140635061 + AluSx SINE Alu 1 287 -20 309 51 0 0 chr12 3151394 3151433 -140635022 + (CA)n Simple_repeat Simple_repeat 2 40 0 1888 139 0 4 chr12 3151469 3151775 -140634680 + AluSg SINE Alu 1 305 0 1736 150 64 27 chr12 3152548 3152799 -140633656 - MER7A DNA MER2_type -2692 346 81 2167 105 3 3 chr12 3152799 3153095 -140633360 - AluSx SINE Alu -16 296 1 1736 150 64 27 chr12 3153095 3153173 -140633282 - MER7A DNA MER2_type -2957 81 7 209 146 91 73 chr12 3153549 3153604 -140632851 - MIR SINE MIR -85 177 122 187 278 62 104 chr12 3153651 3153795 -140632660 + MIR SINE MIR 112 249 -13 1992 108 17 3 chr12 3153877 3154165 -140632290 - AluSx SINE Alu -20 292 1 682 149 0 50 chr12 3154340 3154461 -140631994 + FLAM_C SINE Alu 3 117 -16 651 195 47 8 chr12 3154483 3154611 -140631844 - FLAM_C SINE Alu 0 133 1 244 28 0 0 chr12 3154611 3154647 -140631808 + Alu SINE Alu 285 320 0 2106 106 3 3 chr12 3154652 3154954 -140631501 + AluSq SINE Alu 1 302 -11 370 281 26 26 chr12 3154973 3155087 -140631368 - MIR SINE MIR -47 215 102 718 181 0 15 chr12 3155186 3155319 -140631136 - FLAM_A SINE Alu -11 131 1 780 198 47 41 chr12 3155326 3155498 -140630957 - MER58B DNA MER1_type -14 327 155 1622 156 11 0 chr12 3155557 3155832 -140630623 - AluJo SINE Alu -32 280 3 735 144 40 87 chr12 3155833 3155919 -140630536 - MER58B DNA MER1_type -176 165 89 2228 86 3 0 chr12 3155919 3156220 -140630235 + AluSp SINE Alu 1 302 -11 735 144 40 87 chr12 3156220 3156306 -140630149 - MER58B DNA MER1_type -252 89 1 2461 71 0 0 chr12 3156467 3156778 -140629677 + AluY SINE Alu 1 311 0 1848 121 10 33 chr12 3156791 3157096 -140629359 + AluSx SINE Alu 4 301 -11 1396 161 74 18 chr12 3157577 3157862 -140628593 - AluJb SINE Alu -11 301 1 446 209 0 0 chr12 3157865 3157956 -140628499 - L1ME LINE L1 -727 5437 5347 948 133 42 6 chr12 3157982 3158147 -140628308 - AluJb SINE Alu -22 290 120 180 0 0 0 chr12 3158148 3158168 -140628287 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 263 120 0 40 chr12 3158168 3158218 -140628237 - FLAM_A SINE Alu 0 133 86 1934 126 0 3 chr12 3158229 3158538 -140627917 - AluSx SINE Alu 0 308 1 742 210 70 0 chr12 3158538 3158724 -140627731 - L1ME LINE L1 -821 5325 5127 2033 132 0 0 chr12 3159720 3160015 -140626440 - AluSx SINE Alu -15 297 3 869 210 46 67 chr12 3160117 3160136 -140626319 - L1MD3 LINE L1 0 8042 8024 2306 87 3 0 chr12 3160136 3160447 -140626008 + AluSp SINE Alu 1 312 -1 869 210 46 67 chr12 3160447 3160627 -140625828 - L1MD3 LINE L1 -18 8024 7832 2181 93 0 13 chr12 3160627 3160937 -140625518 - AluSg SINE Alu -4 306 1 869 210 46 67 chr12 3160937 3161074 -140625381 - L1MD3 LINE L1 -210 7832 7694 801 191 0 0 chr12 3161210 3161357 -140625098 - FRAM SINE Alu -29 147 1 1818 96 75 21 chr12 3161673 3161953 -140624502 + AluSx SINE Alu 1 295 -17 2278 88 0 0 chr12 3162043 3162339 -140624116 - AluSc SINE Alu -13 296 1 24 0 0 0 chr12 3162383 3162407 -140624048 + AT_rich Low_complexity Low_complexity 1 24 0 522 158 0 0 chr12 3162806 3162888 -140623567 + AluSg/x SINE Alu 209 290 -19 1983 113 3 3 chr12 3162888 3163180 -140623275 - AluSg SINE Alu -14 296 5 2041 112 3 13 chr12 3163180 3163484 -140622971 - AluSx SINE Alu -11 301 1 25 0 0 0 chr12 3163484 3163509 -140622946 + AT_rich Low_complexity Low_complexity 1 25 0 1942 95 0 18 chr12 3163511 3163810 -140622645 + AluSq SINE Alu 23 313 0 2076 114 0 10 chr12 3163911 3164046 -140622409 + AluSx SINE Alu 1 136 -176 1897 117 10 26 chr12 3164046 3164354 -140622101 + AluSc SINE Alu 1 303 -6 2076 114 0 10 chr12 3164354 3164517 -140621938 + AluSx SINE Alu 136 296 -16 1662 128 40 10 chr12 3165281 3165577 -140620878 - AluSg SINE Alu -5 305 1 21 0 0 0 chr12 3165865 3165886 -140620569 + AT_rich Low_complexity Low_complexity 1 21 0 387 349 27 7 chr12 3165963 3166109 -140620346 + MIR SINE MIR 109 257 -5 1920 71 68 11 chr12 3166866 3167146 -140619309 + AluY SINE Alu 1 296 -15 339 359 46 8 chr12 3167196 3167327 -140619128 + L2 LINE L2 3136 3271 -1 2215 68 0 42 chr12 3168212 3168520 -140617935 - AluY SINE Alu -16 295 1 387 0 0 0 chr12 3168520 3168563 -140617892 + (T)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr12 3168630 3168651 -140617804 + AT_rich Low_complexity Low_complexity 1 21 0 629 206 0 53 chr12 3168702 3168833 -140617622 + FLAM_A SINE Alu 5 128 -5 516 290 41 26 chr12 3168962 3169117 -140617338 + MIR3 SINE MIR 2 162 -46 697 62 21 0 chr12 3169822 3169918 -140616537 - AluSc SINE Alu -4 305 208 875 94 16 8 chr12 3169927 3170055 -140616400 - L1M4 LINE L1 -656 5522 5394 303 28 0 0 chr12 3170057 3170093 -140616362 + (TG)n Simple_repeat Simple_repeat 1 36 0 1679 166 0 50 chr12 3170099 3170419 -140616036 - AluJo SINE Alu -8 304 1 362 230 74 67 chr12 3170419 3170454 -140616001 - L1M4 LINE L1 -1109 5037 5004 2243 103 0 0 chr12 3170454 3170764 -140615691 - AluSg SINE Alu 0 310 1 362 230 74 67 chr12 3170764 3170783 -140615672 - L1M4 LINE L1 -1142 5004 4987 1417 94 18 101 chr12 3170783 3170978 -140615477 - L1MA4 LINE L1 -11 6289 6122 2286 93 3 0 chr12 3170978 3171279 -140615176 - AluSp SINE Alu -11 302 1 1417 94 18 101 chr12 3171279 3171359 -140615096 - L1MA4 LINE L1 -178 6122 6037 362 230 74 67 chr12 3171359 3171438 -140615017 - L1M4 LINE L1 -1159 4987 4902 1923 147 0 0 chr12 3171494 3171787 -140614668 - AluSx SINE Alu -18 294 2 1927 127 0 7 chr12 3171838 3172145 -140614310 - AluSx SINE Alu 0 305 1 2212 87 0 22 chr12 3172388 3172699 -140613756 - AluSc SINE Alu -5 304 1 1842 112 47 4 chr12 3172874 3173152 -140613303 - AluSx SINE Alu -17 295 6 1701 100 0 0 chr12 3174110 3174340 -140612115 + AluSg/x SINE Alu 66 295 -17 2345 71 0 0 chr12 3174451 3174747 -140611708 + AluY SINE Alu 1 296 -15 1271 112 0 21 chr12 3174764 3174952 -140611503 + AluSq SINE Alu 106 289 -24 2176 83 13 0 chr12 3174967 3175267 -140611188 - AluSx SINE Alu -8 304 1 2152 99 3 0 chr12 3175403 3175695 -140610760 - AluSp SINE Alu -20 293 1 2093 99 3 23 chr12 3175745 3176047 -140610408 - AluSx SINE Alu -16 296 1 1807 157 7 0 chr12 3177083 3177382 -140609073 + AluJb SINE Alu 1 301 -11 312 169 143 13 chr12 3177458 3177535 -140608920 + MIR SINE MIR 100 186 -76 2175 80 3 10 chr12 3177995 3178295 -140608160 - AluSq SINE Alu -14 299 2 1755 178 3 0 chr12 3178657 3178950 -140607505 + AluJo SINE Alu 1 294 -18 2342 53 0 20 chr12 3179711 3180014 -140606441 - AluY SINE Alu -14 297 1 198 246 66 33 chr12 3180018 3180079 -140606376 - MIR SINE MIR -86 176 114 192 291 0 36 chr12 3180081 3180136 -140606319 - L2 LINE L2 -12 3301 3249 1952 111 36 13 chr12 3180228 3180534 -140605921 + AluSq SINE Alu 1 313 0 1691 162 0 30 chr12 3180547 3180850 -140605605 + AluJb SINE Alu 3 296 -16 417 317 89 85 chr12 3180866 3181251 -140605204 - L2 LINE L2 -15 3257 2875 1561 182 10 19 chr12 3181251 3181559 -140604896 + AluJo SINE Alu 1 305 -7 894 186 6 12 chr12 3181566 3181727 -140604728 + FRAM SINE Alu 4 163 -3 417 317 89 85 chr12 3181727 3181751 -140604704 - L2 LINE L2 -402 2870 2848 2165 63 31 14 chr12 3181751 3182038 -140604417 + AluY SINE Alu 1 292 -19 417 317 89 85 chr12 3182038 3182176 -140604279 - L2 LINE L2 -424 2848 2619 180 259 241 0 chr12 3182376 3182434 -140604021 - MIR SINE MIR -8 254 183 1639 132 66 11 chr12 3183074 3183346 -140603109 + AluJb SINE Alu 2 288 -24 2294 173 56 18 chr12 3183405 3183475 -140602980 - L1MB8 LINE L1 0 6178 6112 1705 150 3 19 chr12 3183475 3183782 -140602673 + AluSq SINE Alu 1 302 -11 2294 173 56 18 chr12 3183782 3184214 -140602241 - L1MB8 LINE L1 -66 6112 5657 2020 108 42 0 chr12 3184222 3184508 -140601947 - AluSg SINE Alu -12 298 1 2246 103 3 0 chr12 3185104 3185416 -140601039 + AluSp SINE Alu 1 313 0 237 91 0 68 chr12 3185467 3185511 -140600944 - L1MB4 LINE L1 0 6180 6140 2095 103 0 7 chr12 3185516 3185806 -140600649 + AluSx SINE Alu 1 288 -24 281 140 53 18 chr12 3185821 3185878 -140600577 + U7 snRNA snRNA 2 60 -3 1084 181 112 84 chr12 3185910 3185936 -140600519 - AluJo SINE Alu -7 295 271 2040 36 4 0 chr12 3185936 3186183 -140600272 + AluY SINE Alu 45 292 -19 1084 181 112 84 chr12 3186183 3186234 -140600221 - AluJo SINE Alu -30 272 2 734 231 125 19 chr12 3186234 3186442 -140600013 - AluJo SINE Alu -81 231 2 2304 94 17 0 chr12 3186447 3186744 -140599711 - AluY SINE Alu -9 302 1 1294 154 23 0 chr12 3186753 3186973 -140599482 - L1MB4 LINE L1 -29 6151 5927 2504 87 0 0 chr12 3187267 3187578 -140598877 - AluY SINE Alu 0 311 1 583 311 51 8 chr12 3188657 3188892 -140597563 - MIR SINE MIR -5 257 13 2071 148 0 3 chr12 3189152 3189455 -140597000 + AluSx SINE Alu 1 302 -10 568 220 0 0 chr12 3189561 3189670 -140596785 - FLAM_A SINE Alu -33 109 1 2496 84 3 0 chr12 3189788 3190096 -140596359 - AluY SINE Alu -2 309 1 189 107 0 0 chr12 3190496 3190524 -140595931 + (A)n Simple_repeat Simple_repeat 1 28 0 2091 141 3 0 chr12 3190524 3190823 -140595632 + AluSx SINE Alu 1 300 -12 1846 164 3 13 chr12 3190827 3191137 -140595318 + AluJo SINE Alu 6 312 0 300 282 121 77 chr12 3191509 3191849 -140594606 - L1MCa LINE L1 -5146 1280 926 243 299 91 0 chr12 3192297 3192374 -140594081 + L2 LINE L2 3229 3312 -1 1931 130 20 7 chr12 3192546 3192838 -140593617 + AluJb SINE Alu 1 296 -16 2327 92 0 10 chr12 3192840 3193143 -140593312 + AluSx SINE Alu 1 300 -12 2033 86 45 41 chr12 3193324 3193616 -140592839 + AluSp SINE Alu 1 293 -20 2151 81 37 37 chr12 3193681 3193976 -140592479 + AluSc SINE Alu 1 295 -14 2577 74 3 0 chr12 3194059 3194371 -140592084 - AluSq SINE Alu 0 313 1 1901 117 60 7 chr12 3195369 3195652 -140590803 + AluJb SINE Alu 1 298 -14 1813 149 4 18 chr12 3195827 3196108 -140590347 + AluJb SINE Alu 28 304 -8 2131 133 0 3 chr12 3198070 3198370 -140588085 + AluSx SINE Alu 1 299 -13 1818 129 92 4 chr12 3198695 3198966 -140587489 - AluSg SINE Alu -15 295 1 1275 110 0 0 chr12 3198966 3199139 -140587316 - AluSc SINE Alu -2 307 135 1667 178 31 3 chr12 3199151 3199437 -140587018 - AluJb SINE Alu -18 294 1 1904 133 61 0 chr12 3199481 3199759 -140586696 + AluSq SINE Alu 2 296 -17 2130 135 10 0 chr12 3199974 3200278 -140586177 - AluJb SINE Alu -5 307 1 2688 58 0 0 chr12 3200604 3200915 -140585540 - AluY SINE Alu 0 311 1 2258 53 88 0 chr12 3201840 3202123 -140584332 + AluY SINE Alu 2 309 -2 1864 136 16 52 chr12 3202211 3202521 -140583934 - AluJb SINE Alu -13 299 1 1810 130 44 0 chr12 3202567 3202837 -140583618 + AluJo SINE Alu 11 292 -20 2699 39 0 3 chr12 3203384 3203690 -140582765 + AluY SINE Alu 1 305 -6 2327 95 7 0 chr12 3203831 3204125 -140582330 + AluSx SINE Alu 5 300 -12 2573 52 0 16 chr12 3204261 3204571 -140581884 - AluY SINE Alu -5 306 2 723 162 143 19 chr12 3204619 3204773 -140581682 + FRAM SINE Alu 1 173 -3 451 260 101 54 chr12 3204798 3204840 -140581615 + L1MC4a LINE L1 5741 5780 -2028 1308 200 0 123 chr12 3204840 3205190 -140581265 + AluSx SINE Alu 1 307 -5 451 260 101 54 chr12 3205190 3205424 -140581031 + L1MC4a LINE L1 5780 6030 -1778 1888 174 7 0 chr12 3205467 3205766 -140580689 - AluJb SINE Alu -11 301 1 2113 130 3 0 chr12 3205824 3206131 -140580324 - AluSx SINE Alu 0 308 1 857 169 12 44 chr12 3206137 3206297 -140580158 - AluJb SINE Alu -25 287 133 530 150 242 8 chr12 3206459 3206579 -140579876 - MER3 DNA MER1_type -24 185 38 2189 142 0 0 chr12 3206579 3206890 -140579565 - AluSx SINE Alu -1 311 1 956 186 0 0 chr12 3206891 3207052 -140579403 - AluSg/x SINE Alu -15 295 135 1573 175 110 11 chr12 3207577 3207932 -140578523 - MLT1B LTR MaLR 0 390 1 1939 164 3 10 chr12 3207978 3208282 -140578173 - AluJb SINE Alu -10 302 1 212 0 36 0 chr12 3208367 3208395 -140578060 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 712 127 0 0 chr12 3208419 3208529 -140577926 + AluJb SINE Alu 185 294 -18 1140 53 8 0 chr12 3208529 3208661 -140577794 + AluSc SINE Alu 1 133 -176 2052 114 17 3 chr12 3208661 3208951 -140577504 + AluSx SINE Alu 1 294 -18 2502 81 3 0 chr12 3208953 3209263 -140577192 + AluY SINE Alu 1 311 0 990 120 0 0 chr12 3209372 3209505 -140576950 + AluSq/x SINE Alu 1 133 -180 21 0 0 0 chr12 3209507 3209528 -140576927 + AT_rich Low_complexity Low_complexity 1 21 0 1637 195 13 23 chr12 3209645 3209953 -140576502 + AluJb SINE Alu 1 305 -7 408 72 0 14 chr12 3210236 3210305 -140576150 - L1MA9 LINE L1 -5 6307 6240 547 75 88 0 chr12 3210305 3210385 -140576070 - AluY SINE Alu -24 287 201 * 699 103 28 9 chr12 3210379 3210486 -140575969 - AluSq/x SINE Alu -202 110 2 2375 72 3 3 chr12 3210490 3210781 -140575674 - AluSc SINE Alu -18 291 1 2615 50 0 0 chr12 3210781 3211078 -140575377 - AluY SINE Alu -14 297 1 198 0 0 0 chr12 3211078 3211100 -140575355 + (T)n Simple_repeat Simple_repeat 1 22 0 514 86 108 21 chr12 3211101 3211194 -140575261 - U6 snRNA snRNA -6 101 1 2347 60 0 3 chr12 3211336 3211642 -140574813 + AluY SINE Alu 1 305 0 1230 148 0 0 chr12 3211649 3211825 -140574630 + AluSp SINE Alu 137 312 -1 2454 87 3 0 chr12 3211925 3212236 -140574219 - AluSp SINE Alu -1 312 1 2214 117 0 3 chr12 3212237 3212535 -140573920 - AluSq SINE Alu -16 297 1 1881 171 0 25 chr12 3212590 3212906 -140573549 - AluJb SINE Alu 0 312 5 2373 98 10 0 chr12 3213524 3213830 -140572625 - AluSp SINE Alu -4 309 1 283 312 115 10 chr12 3214078 3214307 -140572148 + L2 LINE L2 2775 3026 -246 24 0 0 0 chr12 3214462 3214486 -140571969 + AT_rich Low_complexity Low_complexity 1 24 0 992 128 0 2 chr12 3214487 3214723 -140571732 - AluJb SINE Alu -27 285 5 547 345 39 4 chr12 3214805 3215034 -140571421 - MARNA DNA Mariner -4 582 346 253 79 0 0 chr12 3215200 3215238 -140571217 - MARNA DNA Mariner -242 344 307 207 261 0 29 chr12 3215423 3215492 -140570963 + L2 LINE L2 3140 3206 -66 229 62 42 21 chr12 3216094 3216142 -140570313 + (CCCGG)n Simple_repeat Simple_repeat 3 51 0 32 67 0 0 chr12 3216343 3216403 -140570052 + GC_rich Low_complexity Low_complexity 1 60 0 211 308 0 26 chr12 3218372 3218450 -140568005 + MIR3 SINE MIR 4 79 -129 210 314 0 0 chr12 3218712 3218763 -140567692 - L2 LINE L2 -5 3267 3217 438 228 0 63 chr12 3218933 3218947 -140567508 - MIR3 SINE MIR -47 161 148 1736 71 141 31 chr12 3218947 3219119 -140567336 - AluSx SINE Alu 0 333 181 492 95 0 0 chr12 3219119 3219203 -140567252 + (TA)n Simple_repeat Simple_repeat 2 85 0 2283 101 3 0 chr12 3219203 3219490 -140566965 - AluSp SINE Alu -25 288 1 1736 71 141 31 chr12 3219490 3219621 -140566834 - AluSx SINE Alu -151 182 1 438 228 0 63 chr12 3219621 3219732 -140566723 - MIR3 SINE MIR -60 148 43 2267 101 0 49 chr12 3221303 3221629 -140564826 - AluSp SINE Alu -3 310 1 1769 166 23 26 chr12 3222008 3222315 -140564140 - AluJo SINE Alu -6 306 1 2251 60 32 7 chr12 3222416 3222699 -140563756 - AluY SINE Alu -21 290 1 27 29 0 0 chr12 3222699 3222733 -140563722 + AT_rich Low_complexity Low_complexity 1 34 0 849 168 8 0 chr12 3222736 3222867 -140563588 - AluJb SINE Alu -31 281 150 335 319 84 37 chr12 3223004 3223195 -140563260 + L3 LINE CR1 438 637 -940 2286 111 7 7 chr12 3223259 3223565 -140562890 - AluSg SINE Alu -3 307 2 2339 105 0 0 chr12 3223568 3223862 -140562593 - AluSx SINE Alu -18 294 1 270 267 56 11 chr12 3223886 3223976 -140562479 + L3 LINE CR1 715 808 -769 391 267 170 30 chr12 3223990 3224361 -140562094 - L1ME4a LINE L1 -15 6106 5684 409 280 30 30 chr12 3224370 3224502 -140561953 + L3 LINE CR1 794 925 -652 229 302 62 21 chr12 3224520 3224616 -140561839 - MIR SINE MIR -6 256 157 2485 83 3 0 chr12 3224939 3225241 -140561214 - AluSp SINE Alu -10 303 1 1080 138 16 122 chr12 3225241 3225495 -140560960 - AluJo SINE Alu -1 311 85 185 0 40 0 chr12 3225495 3225520 -140560935 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1818 160 0 24 chr12 3225523 3225811 -140560644 - AluJo SINE Alu -31 281 1 944 221 88 48 chr12 3225973 3226303 -140560152 - MER2 DNA MER2_type -1 343 1 296 316 32 0 chr12 3226326 3226421 -140560034 + L3 LINE CR1 1477 1574 -3 213 220 0 20 chr12 3226419 3226469 -140559986 + MIR3 SINE MIR 114 162 -46 * 870 163 0 7 chr12 3226800 3226935 -140559520 + FLAM_A SINE Alu 1 134 -8 844 198 47 9 chr12 3226938 3227150 -140559305 - MER33 DNA MER1_type -83 241 22 471 231 267 15 chr12 3227152 3227347 -140559108 + MIR SINE MIR 14 257 -5 271 271 59 0 chr12 3227918 3228003 -140558452 - L2 LINE L2 -27 3286 3197 2392 60 7 20 chr12 3228287 3228630 -140557825 - AluY SINE Alu 0 311 1 2263 123 0 0 chr12 3228656 3228957 -140557498 - AluSx SINE Alu 0 312 12 1880 156 0 11 chr12 3228957 3229237 -140557218 - AluJo SINE Alu -33 279 1 2613 65 0 3 chr12 3229347 3229653 -140556802 - AluSp SINE Alu -5 308 4 746 183 83 65 chr12 3229699 3229989 -140556466 - L1ME1 LINE L1 -5 6161 5867 1318 164 44 0 chr12 3229992 3230217 -140556238 - AluJb SINE Alu -77 235 1 270 135 14 122 chr12 3230220 3230294 -140556161 - L1ME1 LINE L1 -859 5287 5222 2173 106 26 10 chr12 3230856 3231158 -140555297 - AluSx SINE Alu -5 307 1 23 33 0 0 chr12 3231917 3231947 -140554508 + AT_rich Low_complexity Low_complexity 1 30 0 2385 176 50 32 chr12 3232039 3232212 -140554243 - L1MC2 LINE L1 -5 6339 6171 2282 99 3 0 chr12 3232212 3232543 -140553912 - AluSp SINE Alu 0 332 1 2385 176 50 32 chr12 3232543 3232864 -140553591 - L1MC2 LINE L1 -173 6171 5831 2192 112 3 23 chr12 3232864 3233167 -140553288 - AluSx SINE Alu -15 297 1 2385 176 50 32 chr12 3233167 3233205 -140553250 - L1MC2 LINE L1 -513 5831 5795 375 351 8 0 chr12 3233217 3233348 -140553107 - MIR SINE MIR -55 153 22 218 319 97 43 chr12 3233925 3234132 -140552323 - MIR SINE MIR -32 230 13 236 243 14 0 chr12 3234142 3234216 -140552239 + CT-rich Low_complexity Low_complexity 2 76 0 295 308 96 25 chr12 3234387 3234585 -140551870 - MIR SINE MIR -34 228 17 2007 165 27 87 chr12 3235066 3235232 -140551223 - L1MB3 LINE L1 -9 6174 6000 1898 118 34 34 chr12 3235232 3235558 -140550897 - AluSx SINE Alu 0 312 2 2007 165 27 87 chr12 3235558 3235769 -140550686 - L1MB3 LINE L1 -183 6000 5830 2417 89 0 0 chr12 3235769 3236071 -140550384 - AluSx SINE Alu -10 302 1 2007 165 27 87 chr12 3236071 3236177 -140550278 - L1MB3 LINE L1 -353 5830 5719 1208 212 62 50 chr12 3236197 3236536 -140549919 + MER82 DNA MER2_type 311 653 0 619 189 114 0 chr12 3236571 3236703 -140549752 - MSTD LTR MaLR -249 147 1 187 298 0 0 chr12 3236708 3236755 -140549700 + L2 LINE L2 3262 3308 -5 388 222 67 0 chr12 3236944 3237034 -140549421 + MIR SINE MIR 53 148 -60 2302 114 0 0 chr12 3237306 3237605 -140548850 + AluSx SINE Alu 1 299 -13 473 123 37 0 chr12 3237635 3237716 -140548739 + AluS SINE Alu 2 85 -228 340 339 62 0 chr12 3237788 3237965 -140548490 + MIR SINE MIR 57 244 -18 192 248 0 119 chr12 3238394 3238503 -140547952 + L2 LINE L2 3142 3237 -76 21 57 0 0 chr12 3240012 3240047 -140546408 + AT_rich Low_complexity Low_complexity 1 35 0 430 311 43 24 chr12 3240300 3240464 -140545991 - MIR3 SINE MIR -8 200 34 370 285 182 31 chr12 3240641 3240960 -140545495 - L2 LINE L2 -7 3265 2899 200 360 182 11 chr12 3241105 3241369 -140545086 - L2 LINE L2 -542 2772 2464 3225 113 26 85 chr12 3241371 3241973 -140544482 - Tigger3(Golem) DNA MER2_type 0 3029 2466 2414 78 0 3 chr12 3241973 3242267 -140544188 + AluY SINE Alu 16 308 -3 3225 113 26 85 chr12 3242267 3242309 -140544146 - Tigger3(Golem) DNA MER2_type -563 2466 2423 1312 85 0 0 chr12 3242442 3242651 -140543804 + AluY SINE Alu 121 329 0 361 305 126 23 chr12 3242771 3243073 -140543382 + L2 LINE L2 2124 2456 -858 1601 153 35 78 chr12 3243076 3243387 -140543068 + Tigger3(Golem) DNA MER2_type 1 324 -2704 2287 118 0 6 chr12 3243387 3243700 -140542755 - AluSx SINE Alu -1 311 1 1601 153 35 78 chr12 3243700 3243760 -140542695 + Tigger3(Golem) DNA MER2_type 324 2153 -875 606 269 188 43 chr12 3243894 3244314 -140542141 - MLT1H LTR MaLR -16 533 53 269 190 69 0 chr12 3247179 3247237 -140539218 + L2 LINE L2 3242 3303 -10 1890 162 3 13 chr12 3247461 3247763 -140538692 - AluJo SINE Alu -13 299 1 2268 92 7 0 chr12 3248118 3248431 -140538024 - AluSp SINE Alu 0 316 2 8512 40 10 14 chr12 3248459 3249457 -140536998 - SVA Other Other 0 1386 393 186 293 98 12 chr12 3249903 3249985 -140536470 + L2 LINE L2 3210 3298 -15 261 0 0 0 chr12 3249987 3250016 -140536439 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2366 49 17 21 chr12 3250151 3250439 -140536016 - AluY SINE Alu -2 309 23 345 292 62 9 chr12 3251601 3251714 -140534741 + MIR3 SINE MIR 87 205 -3 204 318 15 0 chr12 3251898 3251964 -140534491 + L3 LINE CR1 812 878 -699 2014 156 0 6 chr12 3252202 3252516 -140533939 - AluSx SINE Alu 0 312 1 3351 259 51 34 chr12 3252539 3253307 -140533148 - L1MEc LINE L1 -5063 1333 531 2584 50 0 10 chr12 3253307 3253610 -140532845 - AluY SINE Alu -11 300 1 3351 259 51 34 chr12 3253610 3254125 -140532330 - L1MEc LINE L1 -5865 531 27 535 321 139 29 chr12 3254475 3254921 -140531534 + L3 LINE CR1 1054 1548 -29 1665 184 3 14 chr12 3255585 3255879 -140530576 - AluJo SINE Alu -7 305 15 2598 53 0 10 chr12 3255902 3256204 -140530251 - AluY SINE Alu -12 299 1 443 167 0 10 chr12 3256208 3256309 -140530146 + L1MA7 LINE L1 6045 6153 -150 268 294 42 17 chr12 3256385 3256504 -140529951 - MIR SINE MIR -55 153 32 193 324 29 0 chr12 3256884 3256952 -140529503 - L2 LINE L2 -16 3256 3187 669 271 206 2 chr12 3257253 3257777 -140528678 - L2 LINE L2 -6 3307 2670 2176 141 0 3 chr12 3257808 3258121 -140528334 - AluJo SINE Alu 0 312 1 386 342 151 4 chr12 3258123 3258348 -140528107 - MIR SINE MIR -2 260 3 684 200 0 0 chr12 3259205 3259365 -140527090 + (CA)n Simple_repeat Simple_repeat 1 160 0 1813 170 0 3 chr12 3259964 3260271 -140526184 + AluJb SINE Alu 1 306 0 1699 233 71 99 chr12 3261728 3262417 -140524038 - HAL1 LINE L1 -839 1668 1012 2393 64 7 3 chr12 3262417 3262712 -140523743 - AluY SINE Alu -15 296 1 1699 233 71 99 chr12 3262712 3263003 -140523452 - HAL1 LINE L1 -1495 1012 715 2467 70 3 3 chr12 3263015 3263314 -140523141 + AluSq SINE Alu 2 300 -13 1193 255 184 22 chr12 3263315 3263852 -140522603 + HAL1 LINE L1 84 707 -1800 229 287 58 0 chr12 3264085 3264172 -140522283 + L2 LINE L2 3180 3271 -1 224 322 33 0 chr12 3264486 3264576 -140521879 + MIR3 SINE MIR 89 181 -27 544 307 13 42 chr12 3264835 3265073 -140521382 + MIR SINE MIR 20 250 -12 2106 118 13 26 chr12 3265104 3265410 -140521045 - AluSx SINE Alu -10 302 1 219 280 98 0 chr12 3265434 3265502 -140520953 - MIR SINE MIR -64 144 78 608 174 28 141 chr12 3265544 3265676 -140520779 - L1 LINE L1 -2711 3435 3290 2407 84 7 0 chr12 3265676 3265973 -140520482 - AluSp SINE Alu -14 299 1 608 174 28 141 chr12 3265973 3266164 -140520291 - L1 LINE L1 -2856 3290 3155 1683 188 9 31 chr12 3266164 3266483 -140519972 - AluJo SINE Alu 0 312 1 608 174 28 141 chr12 3266483 3266521 -140519934 - L1 LINE L1 -2991 3155 3114 670 265 151 12 chr12 3266548 3266872 -140519583 - L2 LINE L2 -8 3305 2937 277 289 56 106 chr12 3267506 3267588 -140518867 + L2 LINE L2 3138 3212 -60 1420 221 47 3 chr12 3267588 3267910 -140518545 - MER58B DNA MER1_type -4 337 2 277 289 56 106 chr12 3267910 3267969 -140518486 + L2 LINE L2 3212 3272 0 2209 113 27 0 chr12 3268066 3268359 -140518096 + AluSx SINE Alu 1 301 -11 3003 173 25 48 chr12 3268405 3268964 -140517491 - L1MB8 LINE L1 -10 6168 5627 1555 171 60 26 chr12 3268964 3269316 -140517139 - MLT1A1 LTR MaLR -1 364 1 3003 173 25 48 chr12 3269316 3269467 -140516988 - L1MB8 LINE L1 -551 5627 5474 433 290 34 111 chr12 3269724 3269986 -140516469 + MIR SINE MIR 9 250 -12 244 322 185 15 chr12 3270196 3270401 -140516054 - L3 LINE CR1 -223 1354 1115 455 293 105 6 chr12 3271504 3271685 -140514770 + MIR SINE MIR 45 243 -19 2416 93 7 0 chr12 3271761 3272071 -140514384 - AluSx SINE Alu 0 312 1 325 276 60 35 chr12 3272805 3272921 -140513534 - MIR SINE MIR -124 138 20 294 310 44 6 chr12 3273388 3273546 -140512909 + MIR3 SINE MIR 21 184 -24 322 274 85 13 chr12 3274465 3274618 -140511837 + MIR3 SINE MIR 23 186 -22 324 294 122 50 chr12 3274624 3274758 -140511697 - MIR SINE MIR -2 260 137 361 259 140 84 chr12 3274758 3274861 -140511594 + MER102b DNA MER1_type 3 99 -1329 1976 156 0 44 chr12 3274861 3275176 -140511279 - AluJb SINE Alu -11 301 1 361 259 140 84 chr12 3275176 3275393 -140511062 + MER102b DNA MER1_type 99 341 0 324 294 122 50 chr12 3275393 3275496 -140510959 - MIR SINE MIR -125 137 6 2332 47 54 0 chr12 3275553 3275830 -140510625 + AluY SINE Alu 1 292 -19 725 191 253 18 chr12 3275831 3276056 -140510399 - AluSg1 SINE Alu -30 279 2 512 281 41 12 chr12 3277138 3277309 -140509146 - MIR SINE MIR -3 259 84 425 272 44 34 chr12 3277842 3277930 -140508525 + L1ME4a LINE L1 5698 5784 -337 1975 93 86 11 chr12 3277930 3278208 -140508247 - AluSp SINE Alu -14 299 1 425 272 44 34 chr12 3278208 3278274 -140508181 + L1ME4a LINE L1 5784 5857 -264 1972 159 0 16 chr12 3278274 3278582 -140507873 + AluJo SINE Alu 1 303 -9 425 272 44 34 chr12 3278582 3278632 -140507823 + L1ME4a LINE L1 5857 5905 -216 329 256 128 17 chr12 3278650 3278767 -140507688 + L1ME4a LINE L1 5964 6093 -28 23 0 0 0 chr12 3278987 3279010 -140507445 + AT_rich Low_complexity Low_complexity 1 23 0 426 266 179 6 chr12 3279532 3279705 -140506750 + MIR SINE MIR 11 213 -49 1358 157 26 0 chr12 3279725 3279955 -140506500 - Tigger3b DNA MER2_type 0 1241 1006 252 151 0 19 chr12 3280011 3280054 -140506401 - Tigger3b DNA MER2_type -255 976 935 667 106 0 53 chr12 3280054 3280125 -140506330 - MSTA LTR MaLR 0 428 364 1630 158 102 11 chr12 3280125 3280410 -140506045 + AluJo SINE Alu 1 311 -1 667 106 0 53 chr12 3280410 3280451 -140506004 - MSTA LTR MaLR -64 364 322 591 141 11 0 chr12 3280461 3280553 -140505902 - FLAM_A SINE Alu -30 112 20 29 0 0 0 chr12 3280586 3280615 -140505840 + AT_rich Low_complexity Low_complexity 1 29 0 856 96 43 0 chr12 3280617 3280732 -140505723 + FLAM_C SINE Alu 1 120 -23 1270 119 50 54 chr12 3280732 3280858 -140505597 - Tigger3b DNA MER2_type -2565 463 338 2487 71 0 0 chr12 3280858 3281153 -140505302 - AluY SINE Alu -16 295 1 1270 119 50 54 chr12 3281153 3281287 -140505168 - Tigger3b DNA MER2_type -2690 338 204 592 149 0 47 chr12 3281297 3281404 -140505051 - FLAM_A SINE Alu -21 121 20 1136 191 15 0 chr12 3281430 3281629 -140504826 - Tigger3b DNA MER2_type -1026 205 4 730 142 18 0 chr12 3281943 3282056 -140504399 + FLAM_A SINE Alu 1 115 -18 2255 159 49 2 chr12 3282259 3282705 -140503750 - L1MB3 LINE L1 -2 6181 5715 729 329 29 0 chr12 3282971 3283217 -140503238 + MIR SINE MIR 4 256 -6 671 266 22 5 chr12 3284097 3284281 -140502174 + MIR SINE MIR 73 259 -3 287 287 167 6 chr12 3284641 3284815 -140501640 - MIR SINE MIR -6 256 55 421 309 60 20 chr12 3284902 3285103 -140501352 + MIR SINE MIR 53 261 -1 3799 174 30 14 chr12 3285267 3286030 -140500425 - L1MB5 LINE L1 -9 6165 5391 22 0 0 0 chr12 3286874 3286896 -140499559 + AT_rich Low_complexity Low_complexity 1 22 0 235 311 141 67 chr12 3287368 3287503 -140498952 + MIR SINE MIR 38 182 -80 434 276 115 29 chr12 3287840 3288014 -140498441 - MIR3 SINE MIR 0 208 20 1748 156 0 11 chr12 3288601 3288884 -140497571 - AluJo SINE Alu -32 280 1 218 179 0 54 chr12 3289757 3289813 -140496642 - MIR SINE MIR -182 80 28 307 291 29 10 chr12 3289900 3290003 -140496452 - MIR SINE MIR -55 207 103 217 250 36 12 chr12 3291473 3291557 -140494898 + MIR SINE MIR 39 124 -84 1241 145 24 121 chr12 3291960 3292257 -140494198 - AluJb SINE Alu -10 302 35 1698 145 81 7 chr12 3293062 3293345 -140493110 - AluJb SINE Alu -8 304 1 203 306 194 32 chr12 3293621 3293745 -140492710 + MER5C DNA MER1_type 4 147 -177 405 258 172 8 chr12 3295509 3295637 -140490818 - MIR SINE MIR -33 229 81 3241 196 33 130 chr12 3296263 3297579 -140488876 - L1MC4a LINE L1 -87 7721 6545 248 0 31 0 chr12 3297580 3297612 -140488843 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2004 116 14 0 chr12 3297615 3297899 -140488556 - AluSx SINE Alu -24 288 1 683 272 91 25 chr12 3297924 3298167 -140488288 + MLT1C LTR MaLR 200 458 -9 272 217 0 12 chr12 3299247 3299330 -140487125 + G-rich Low_complexity Low_complexity 5 86 0 284 279 7 7 chr12 3299352 3299502 -140486953 + G-rich Low_complexity Low_complexity 1 150 0 2260 79 3 10 chr12 3299595 3299912 -140486543 + AluSx SINE Alu 1 315 0 290 211 53 0 chr12 3299919 3300014 -140486441 - L1M4 LINE L1 -1554 4592 4493 2923 198 43 23 chr12 3300016 3300042 -140486413 + MER21B LTR ERV1 1 25 -838 2186 70 37 20 chr12 3300042 3300340 -140486115 + AluSq SINE Alu 1 303 -10 2923 198 43 23 chr12 3300340 3300971 -140485484 + MER21B LTR ERV1 25 671 -192 491 158 0 24 chr12 3300971 3301053 -140485402 - AluJ/FLAM SINE Alu -232 80 1 539 270 86 67 chr12 3301083 3301247 -140485208 - L1MEd LINE L1 -4715 1595 1436 2007 134 0 3 chr12 3301247 3301546 -140484909 - AluSx SINE Alu -9 303 6 539 270 86 67 chr12 3301546 3302098 -140484357 - L1MEd LINE L1 -4874 1436 826 410 366 114 25 chr12 3302102 3302271 -140484184 - L1MEd LINE L1 -5526 593 440 2104 121 16 0 chr12 3302271 3302577 -140483878 - AluSx SINE Alu -1 311 1 410 366 114 25 chr12 3302577 3302724 -140483731 - L1MEd LINE L1 -5679 440 249 1461 164 53 49 chr12 3302729 3303033 -140483422 + AluJo SINE Alu 1 305 -7 332 272 0 25 chr12 3303082 3303163 -140483292 - L1MEd LINE L1 -6037 82 4 2042 151 0 0 chr12 3303191 3303490 -140482965 + AluSx SINE Alu 1 299 -13 269 328 17 17 chr12 3303670 3303786 -140482669 + MIR SINE MIR 37 152 -56 2342 77 0 0 chr12 3303827 3304126 -140482329 - AluSx SINE Alu -13 299 1 1005 227 36 0 chr12 3304908 3305155 -140481300 - L1MB2 LINE L1 -2 6169 5914 557 126 0 23 chr12 3305171 3305258 -140481197 - AluJ/FLAM SINE Alu -227 85 1 1895 155 0 22 chr12 3305268 3305585 -140480870 - AluJb SINE Alu -2 310 1 1516 189 47 6 chr12 3305586 3305908 -140480547 - L1MB2 LINE L1 -222 5949 5611 2097 87 0 4 chr12 3305908 3306183 -140480272 - AluSx SINE Alu -38 274 1 1516 189 47 6 chr12 3306183 3306199 -140480256 - L1MB2 LINE L1 -560 5611 5597 208 366 12 0 chr12 3306320 3306402 -140480053 - MIR3 SINE MIR -41 167 85 224 241 52 0 chr12 3307176 3307234 -140479221 - L2 LINE L2 0 3272 3212 1704 169 0 22 chr12 3307528 3307847 -140478608 + AluJo SINE Alu 1 312 0 1091 134 0 12 chr12 3308188 3308203 -140478252 - AluSg/x SINE Alu -14 298 284 2192 106 3 6 chr12 3308203 3308515 -140477940 - AluSp SINE Alu 0 313 3 192 40 0 0 chr12 3308515 3308540 -140477915 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1091 134 0 12 chr12 3308540 3308694 -140477761 - AluSg/x SINE Alu -26 286 130 768 237 72 47 chr12 3308758 3309037 -140477418 - MLT1J LTR MaLR 0 511 226 2252 164 29 40 chr12 3309627 3310072 -140476383 - L1MB3 LINE L1 -10 6173 5734 316 352 36 0 chr12 3310438 3310613 -140475842 - MIR3 SINE MIR -62 146 12 2396 162 52 0 chr12 3312058 3312465 -140473990 - MSTC LTR MaLR 0 428 1 234 208 16 70 chr12 3312587 3312679 -140473776 - MIR SINE MIR -95 113 32 460 185 56 9 chr12 3312893 3313001 -140473454 + MIR SINE MIR 52 164 -98 3903 146 27 52 chr12 3313027 3313295 -140473160 - L1MB4 LINE L1 -2 6178 5905 2238 83 0 23 chr12 3313295 3313596 -140472859 + AluSg SINE Alu 1 294 -16 3903 146 27 52 chr12 3313596 3313625 -140472830 - L1MB4 LINE L1 -275 5905 5877 1952 102 21 25 chr12 3313625 3313910 -140472545 + AluSx SINE Alu 12 295 -17 3903 146 27 52 chr12 3313910 3314439 -140472016 - L1MB4 LINE L1 -303 5877 5372 193 370 33 0 chr12 3314486 3314578 -140471877 - L2 LINE L2 -55 3217 3123 280 274 113 28 chr12 3316156 3316262 -140470193 + MIR3 SINE MIR 72 186 -22 516 293 116 0 chr12 3316325 3316489 -140469966 + MIR SINE MIR 26 208 -54 1810 162 21 60 chr12 3316872 3317091 -140469364 + L1MA7 LINE L1 5844 6039 -252 1595 158 3 100 chr12 3317091 3317290 -140469165 - AluJo SINE Alu -4 308 154 2329 87 0 10 chr12 3317290 3317602 -140468853 - AluY SINE Alu 0 311 3 1595 158 3 100 chr12 3317602 3317743 -140468712 - AluJo SINE Alu -158 154 1 1810 162 21 60 chr12 3317743 3317955 -140468500 + L1MA7 LINE L1 6039 6258 -33 1342 167 21 17 chr12 3317955 3318188 -140468267 + MER46A DNA MER2_type 1 234 -2 2151 99 36 0 chr12 3318217 3318519 -140467936 + AluSp SINE Alu 1 313 0 2090 113 10 7 chr12 3318549 3318851 -140467604 + AluSx SINE Alu 1 303 -9 480 193 0 0 chr12 3319296 3319384 -140467071 + MER69A DNA AcHobo 3 90 -87 594 237 0 7 chr12 3319385 3319520 -140466935 - L1MA10 LINE L1 -12 6322 6189 316 232 50 10 chr12 3319521 3319620 -140466835 + MER69A DNA AcHobo 75 177 0 941 266 147 38 chr12 3319783 3320523 -140465932 - L2 LINE L2 -2 3311 2481 232 367 22 43 chr12 3320516 3320655 -140465800 - L2 LINE L2 -51 3221 3086 * 2323 89 0 9 chr12 3320951 3321266 -140465189 + AluSx SINE Alu 1 312 0 184 276 47 79 chr12 3321266 3321393 -140465062 - MIR3 SINE MIR -77 131 9 2172 117 0 3 chr12 3323030 3323337 -140463118 - AluSq SINE Alu -7 306 1 2262 113 0 0 chr12 3323469 3323771 -140462684 - AluSx SINE Alu -10 302 1 1464 203 10 7 chr12 3324756 3325057 -140461398 - AluJo SINE Alu -10 302 1 21 0 0 0 chr12 3325064 3325085 -140461370 + AT_rich Low_complexity Low_complexity 1 21 0 2182 88 18 0 chr12 3325262 3325546 -140460909 + AluSx SINE Alu 1 289 -23 624 161 194 0 chr12 3325567 3325691 -140460764 + FAM SINE Alu 16 163 -22 246 347 13 0 chr12 3325693 3325768 -140460687 + MIR3 SINE MIR 126 201 -7 450 254 51 14 chr12 3326365 3326503 -140459952 + MIR3 SINE MIR 37 179 -29 829 146 36 0 chr12 3327461 3327598 -140458857 - AluJb SINE Alu -7 305 164 587 179 60 0 chr12 3327706 3327823 -140458632 + AluJo SINE Alu 5 128 -174 1723 189 0 0 chr12 3327837 3328133 -140458322 - AluJb SINE Alu -16 296 1 1005 190 18 0 chr12 3328264 3328427 -140458028 + AluJo SINE Alu 137 302 0 207 359 13 0 chr12 3328835 3328913 -140457542 - L2 LINE L2 -8 3264 3186 302 327 48 0 chr12 3328973 3329100 -140457355 - MIR SINE MIR -63 145 33 21 0 0 0 chr12 3329298 3329319 -140457136 + GC_rich Low_complexity Low_complexity 1 21 0 191 219 24 0 chr12 3329616 3329657 -140456798 - MIR SINE MIR -118 144 103 295 303 15 38 chr12 3331932 3332064 -140454391 - L2 LINE L2 -1 3312 3184 219 256 33 78 chr12 3332043 3332133 -140454322 + L2 LINE L2 3148 3233 -80 * 267 289 19 19 chr12 3332681 3332785 -140453670 + CT-rich Low_complexity Low_complexity 1 104 0 2206 114 0 3 chr12 3333110 3333416 -140453039 - AluSx SINE Alu -7 305 1 379 269 83 40 chr12 3333489 3333641 -140452814 - MIR SINE MIR -58 150 6 1865 113 17 26 chr12 3335311 3335613 -140450842 + AluSg SINE Alu 1 299 -11 785 184 45 133 chr12 3335626 3335963 -140450492 + MLT1A1 LTR MaLR 1 307 -58 2025 104 7 23 chr12 3336321 3336629 -140449826 + AluSg SINE Alu 1 303 -7 1507 243 95 95 chr12 3336644 3336902 -140449553 - HAL1 LINE L1 -79 2428 2172 2154 35 24 12 chr12 3336902 3337156 -140449299 - AluY SINE Alu -19 292 36 1507 243 95 95 chr12 3337156 3337207 -140449248 - HAL1 LINE L1 -335 2172 2123 1845 157 61 0 chr12 3337207 3337500 -140448955 + AluJb SINE Alu 1 311 -1 1507 243 95 95 chr12 3337500 3337757 -140448698 - HAL1 LINE L1 -384 2123 1868 2240 110 10 0 chr12 3337757 3338057 -140448398 - AluSx SINE Alu -9 303 1 1507 243 95 95 chr12 3338057 3338340 -140448115 - HAL1 LINE L1 -639 1868 1587 1973 151 0 29 chr12 3338340 3338652 -140447803 - AluSx SINE Alu -9 303 1 1507 243 95 95 chr12 3338652 3339116 -140447339 - HAL1 LINE L1 -920 1587 1105 611 279 109 20 chr12 3339117 3339364 -140447091 - MLT1J LTR MaLR 0 511 243 1777 98 114 4 chr12 3339827 3340081 -140446374 - AluSq SINE Alu -31 282 1 414 282 60 0 chr12 3340086 3340203 -140446252 - HAL1 LINE L1 -1558 949 826 734 164 15 15 chr12 3340266 3340400 -140446055 + AluJo SINE Alu 2 135 -177 1810 188 0 0 chr12 3340400 3340692 -140445763 + AluSx SINE Alu 1 292 -20 3762 150 71 50 chr12 3340692 3341456 -140444999 - L1MB8 LINE L1 -57 6121 5374 1986 155 7 0 chr12 3341456 3341746 -140444709 - AluSx SINE Alu -20 292 1 3762 150 71 50 chr12 3341746 3341880 -140444575 - L1MB8 LINE L1 -804 5374 5244 1861 141 19 48 chr12 3341880 3342049 -140444406 - AluJo SINE Alu -8 304 147 2619 53 0 3 chr12 3342049 3342353 -140444102 - AluY SINE Alu -8 303 1 1861 141 19 48 chr12 3342353 3342496 -140443959 - AluJo SINE Alu -165 147 1 3762 150 71 50 chr12 3342496 3342601 -140443854 - L1MB8 LINE L1 -934 5244 5093 654 276 45 76 chr12 3342605 3342986 -140443469 - HAL1 LINE L1 -1703 804 436 855 181 0 0 chr12 3343014 3343152 -140443303 - FLAM_C SINE Alu -5 138 1 251 285 62 28 chr12 3343395 3343539 -140442916 - HAL1 LINE L1 -2358 149 1 455 289 64 46 chr12 3344479 3344697 -140441758 - MIR SINE MIR -40 222 1 258 302 57 0 chr12 3345316 3345428 -140441027 + MIR SINE MIR 48 165 -43 819 139 0 0 chr12 3347468 3347583 -140438872 + AluJb SINE Alu 3 117 -195 2235 113 0 23 chr12 3347627 3347936 -140438519 + AluSx SINE Alu 1 302 -10 1998 182 7 0 chr12 3348355 3348663 -140437792 + AluJo SINE Alu 1 310 -2 210 235 44 29 chr12 3348673 3348741 -140437714 + MIR SINE MIR 36 104 -104 223 262 74 94 chr12 3351192 3351341 -140435114 - MIR3 SINE MIR -22 186 41 349 300 71 21 chr12 3351940 3352080 -140434375 - MER5B DNA MER1_type 0 178 32 682 222 86 50 chr12 3352080 3352301 -140434154 - L1MD2 LINE L1 0 6359 6131 2372 87 10 0 chr12 3352504 3352802 -140433653 - AluSx SINE Alu -11 301 1 244 203 119 76 chr12 3354303 3354421 -140432034 + MIR SINE MIR 24 146 -116 258 95 0 0 chr12 3354479 3354521 -140431934 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 572 192 295 5 chr12 3354730 3354923 -140431532 + MIR SINE MIR 14 262 0 314 184 138 0 chr12 3356068 3356155 -140430300 - MIR SINE MIR -70 192 94 238 275 25 50 chr12 3356173 3356253 -140430202 - L2 LINE L2 0 3313 3236 337 285 134 18 chr12 3356307 3356742 -140429713 - L2 LINE L2 -188 3125 2644 189 0 0 0 chr12 3357299 3357320 -140429135 + (AGGGGG)n Simple_repeat Simple_repeat 6 26 0 2510 90 0 0 chr12 3357449 3357759 -140428696 + AluSq SINE Alu 1 310 -3 207 307 67 0 chr12 3357792 3357867 -140428588 + MIR SINE MIR 70 149 -113 2031 126 48 3 chr12 3358258 3358552 -140427903 + AluJb SINE Alu 1 307 -5 796 188 0 0 chr12 3359649 3359782 -140426673 - FLAM_A SINE Alu 0 133 1 1972 125 11 57 chr12 3359813 3360034 -140426421 + MER1B DNA MER1_type 1 202 -2508 2447 59 7 20 chr12 3360034 3360340 -140426115 + AluY SINE Alu 1 302 -9 1972 125 11 57 chr12 3360340 3360471 -140425984 + MER1B DNA MER1_type 202 337 0 315 309 36 52 chr12 3361046 3361240 -140425215 - L2 LINE L2 -19 3294 3104 729 179 0 8 chr12 3361281 3361415 -140425040 - FLAM_A SINE Alu -9 133 1 1900 163 3 13 chr12 3361424 3361725 -140424730 - AluJb SINE Alu -13 299 2 1205 186 18 63 chr12 3361725 3361827 -140424628 + MER58B DNA MER1_type 78 183 -2237 1990 137 27 0 chr12 3361827 3362120 -140424335 - AluJb SINE Alu -11 301 1 1205 186 18 63 chr12 3362120 3362292 -140424163 + MER58B DNA MER1_type 183 341 0 1501 302 122 7 chr12 3362457 3363198 -140423257 - HAL1 LINE L1 -1480 1027 202 406 135 11 11 chr12 3363200 3363254 -140423201 + CT-rich Low_complexity Low_complexity 2 58 -32 2249 115 0 0 chr12 3363254 3363542 -140422913 - AluSx SINE Alu -24 288 1 406 135 11 11 chr12 3363542 3363576 -140422879 + CT-rich Low_complexity Low_complexity 57 90 0 1645 169 0 4 chr12 3363612 3363867 -140422588 - AluJb SINE Alu -54 258 5 390 88 50 25 chr12 3363881 3363961 -140422494 + CT-rich Low_complexity Low_complexity 1 82 0 377 70 18 0 chr12 3363977 3364034 -140422421 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 841 126 11 27 chr12 3364035 3364218 -140422237 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 257 203 43 0 chr12 3364226 3364295 -140422160 + CT-rich Low_complexity Low_complexity 6 77 0 272 170 0 21 chr12 3364296 3364343 -140422112 - AluS SINE Alu -22 278 233 256 279 113 81 chr12 3364346 3364432 -140422023 - MLT1J LTR MaLR -52 459 377 1414 199 57 4 chr12 3364432 3364713 -140421742 - AluSx SINE Alu -16 296 1 256 279 113 81 chr12 3364713 3364848 -140421607 - MLT1J LTR MaLR -134 377 231 2401 68 10 32 chr12 3365017 3365326 -140421129 + AluSp SINE Alu 1 302 -11 1280 168 44 103 chr12 3365339 3365727 -140420728 + MLT1A1 LTR MaLR 1 365 0 612 242 199 5 chr12 3365924 3366110 -140420345 - MLT1J LTR MaLR -257 254 33 2050 145 0 3 chr12 3366188 3366485 -140419970 - AluJo SINE Alu -16 296 1 1737 182 10 22 chr12 3366485 3366797 -140419658 - AluJo SINE Alu -3 309 1 2623 48 0 13 chr12 3366843 3367156 -140419299 - AluY SINE Alu -2 309 1 264 315 87 3 chr12 3367163 3367307 -140419148 - MIR SINE MIR -50 212 58 381 151 0 0 chr12 3367493 3367579 -140418876 + (CCTG)n Simple_repeat Simple_repeat 3 88 0 1311 170 0 38 chr12 3367579 3367814 -140418641 - AluJb SINE Alu -3 309 84 216 274 43 4 chr12 3368299 3368391 -140418064 - MIR SINE MIR -104 104 12 650 245 21 7 chr12 3368779 3368922 -140417533 - L2 LINE L2 -2 3311 3167 833 163 0 16 chr12 3369127 3369256 -140417199 + FLAM_C SINE Alu 1 127 -16 207 322 17 26 chr12 3369370 3369485 -140416970 + MER5A DNA MER1_type 4 117 -72 829 236 16 16 chr12 3369959 3370150 -140416305 - AluJo SINE Alu 0 312 122 189 0 0 0 chr12 3371077 3371098 -140415357 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2693 46 0 0 chr12 3371187 3371494 -140414961 + AluY SINE Alu 1 307 -4 201 74 0 0 chr12 3371723 3371750 -140414705 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 1552 158 0 0 chr12 3371761 3371989 -140414466 - AluJo SINE Alu -84 228 1 2663 42 0 7 chr12 3371998 3372308 -140414147 - AluY SINE Alu -3 308 1 332 201 163 105 chr12 3372331 3372625 -140413830 - L1MC5 LINE L1 -945 6863 6553 2342 95 7 7 chr12 3373190 3373494 -140412961 - AluSx SINE Alu -8 304 1 1821 209 150 4 chr12 3373746 3374254 -140412201 + MLT1E LTR MaLR 8 589 -4 807 336 110 44 chr12 3374270 3375200 -140411255 + L2 LINE L2 379 1389 -1925 1721 213 0 0 chr12 3375200 3375505 -140410950 - AluJb SINE Alu -7 305 1 807 336 110 44 chr12 3375505 3375627 -140410828 + L2 LINE L2 1389 1501 -1813 2527 165 53 48 chr12 3375648 3376235 -140410220 + LTR8A LTR ERV1 37 626 -101 894 170 19 94 chr12 3376229 3376361 -140410094 + LTR8 LTR ERV1 496 608 -83 * 2292 84 0 0 chr12 3376361 3376635 -140409820 + AluSx SINE Alu 25 298 -14 894 170 19 94 chr12 3376635 3376714 -140409741 + LTR8 LTR ERV1 608 691 0 326 226 189 3 chr12 3376826 3376987 -140409468 - L1ME LINE L1 -4970 1089 826 643 173 0 0 chr12 3377022 3377132 -140409323 - FLAM_A SINE Alu -10 132 23 1773 239 20 93 chr12 3377148 3377624 -140408831 - L1ME LINE L1 -5168 902 493 2255 99 3 0 chr12 3377624 3377928 -140408527 - AluSp SINE Alu 0 305 1 1773 239 20 93 chr12 3377928 3378162 -140408293 - L1ME LINE L1 -5577 493 243 3024 128 14 10 chr12 3378162 3378655 -140407800 + MER4D LTR ERV1 1 495 -408 1350 189 0 0 chr12 3378668 3378896 -140407559 + AluJb SINE Alu 85 312 0 2134 145 0 10 chr12 3378897 3379201 -140407254 + AluJb SINE Alu 1 301 -11 881 129 30 89 chr12 3379201 3379403 -140407052 + MER4E LTR ERV1 429 618 -161 2342 103 0 3 chr12 3379406 3379707 -140406748 - AluY SINE Alu -11 300 1 2261 230 116 14 chr12 3379722 3380388 -140406067 + MER50 LTR ERV1 1 734 0 1067 153 0 6 chr12 3380388 3380549 -140405906 + MER4D LTR ERV1 744 903 0 537 292 12 56 chr12 3380549 3380803 -140405652 - L1ME LINE L1 -5824 246 1 469 304 70 11 chr12 3380827 3381097 -140405358 + L2 LINE L2 1685 1970 -1344 1694 186 0 49 chr12 3381187 3381494 -140404961 - AluJo SINE Alu -20 292 1 2734 45 0 0 chr12 3381560 3381868 -140404587 - AluY SINE Alu -3 308 1 237 83 0 0 chr12 3382658 3382694 -140403761 + (CA)n Simple_repeat Simple_repeat 1 36 0 1071 195 0 0 chr12 3382852 3383037 -140403418 + MER58A DNA MER1_type 39 223 -1 363 181 71 71 chr12 3383085 3383212 -140403243 + MER53 DNA DNA 1 127 -62 23 78 0 0 chr12 3383609 3383660 -140402795 + AT_rich Low_complexity Low_complexity 1 51 0 847 129 9 0 chr12 3383670 3383786 -140402669 - FLAM_C SINE Alu -24 119 3 2403 93 3 13 chr12 3384950 3385263 -140401192 - AluSx SINE Alu 0 312 3 2351 80 7 3 chr12 3385268 3385567 -140400888 - AluSx SINE Alu -12 300 1 2189 91 51 0 chr12 3385629 3385905 -140400550 - AluSx SINE Alu -22 290 1 1013 219 32 24 chr12 3386038 3386284 -140400171 + MIR SINE MIR 13 260 -2 440 198 86 9 chr12 3386596 3386712 -140399743 + MER94 DNA DNA 10 134 0 180 257 43 29 chr12 3386912 3386982 -140399473 - L3b LINE CR1 -353 1230 1160 1871 124 42 35 chr12 3387149 3387432 -140399023 - AluJb SINE Alu -27 285 1 1477 131 3 134 chr12 3387453 3387774 -140398681 + AluJo SINE Alu 33 311 -1 299 267 184 73 chr12 3387785 3387873 -140398582 - MIR SINE MIR -6 256 179 2360 77 7 0 chr12 3387873 3388173 -140398282 - AluSx SINE Alu 0 312 5 299 267 184 73 chr12 3388173 3388290 -140398165 - MIR SINE MIR -83 179 28 1361 169 61 32 chr12 3388784 3389063 -140397392 - AluJo SINE Alu -25 287 1 1715 113 21 17 chr12 3389157 3389448 -140397007 + AluJb SINE Alu 21 312 0 362 92 0 15 chr12 3390062 3390127 -140396328 + (CCCCG)n Simple_repeat Simple_repeat 3 66 0 180 0 0 0 chr12 3390169 3390189 -140396266 + (CGG)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr12 3390241 3390263 -140396192 + GC_rich Low_complexity Low_complexity 1 22 0 197 189 0 0 chr12 3391126 3391163 -140395292 + L2 LINE L2 3019 3055 -217 327 311 14 74 chr12 3391648 3391755 -140394700 - MIR3 SINE MIR 0 262 150 2166 101 3 0 chr12 3391755 3392051 -140394404 - AluSx SINE Alu -7 305 9 327 311 14 74 chr12 3392051 3392220 -140394235 - MIR3 SINE MIR -112 150 3 2216 125 0 0 chr12 3392229 3392542 -140393913 - AluSq SINE Alu 0 313 1 1758 141 9 58 chr12 3392544 3392870 -140393585 - AluJo SINE Alu -2 310 1 234 306 117 18 chr12 3392900 3393011 -140393444 + MIR3 SINE MIR 68 189 -19 755 152 78 86 chr12 3393079 3393110 -140393345 - L1MB2 LINE L1 -7 6164 6134 2110 101 3 10 chr12 3393110 3393416 -140393039 - AluSg SINE Alu -5 305 2 755 152 78 86 chr12 3393416 3393618 -140392837 - L1MB2 LINE L1 -37 6134 5929 478 339 30 0 chr12 3393797 3393965 -140392490 + MIR SINE MIR 90 262 0 1307 177 78 35 chr12 3394465 3394590 -140391865 + AluJo SINE Alu 1 119 -193 351 0 0 0 chr12 3394590 3394629 -140391826 + (TG)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr12 3394628 3394653 -140391802 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 1307 177 78 35 chr12 3394629 3394809 -140391646 + AluJo SINE Alu 119 294 -18 227 299 58 11 chr12 3394811 3394898 -140391557 - L2 LINE L2 -49 3264 3174 231 253 80 0 chr12 3395235 3395310 -140391145 - L2 LINE L2 0 3313 3233 205 260 0 0 chr12 3395609 3395659 -140390796 + L2 LINE L2 3178 3227 -86 469 309 94 6 chr12 3396138 3396319 -140390136 - MER117 DNA MER1_type 0 197 1 199 330 11 32 chr12 3397497 3397591 -140388864 - MIR SINE MIR -66 196 105 600 190 157 0 chr12 3397902 3398023 -140388432 + AluSg SINE Alu 3 142 -168 334 285 29 44 chr12 3398389 3398526 -140387929 + MIR3 SINE MIR 52 186 -22 230 288 30 15 chr12 3399518 3399584 -140386871 - MER91C DNA MER1_type -1 189 123 1570 157 49 28 chr12 3400036 3400322 -140386133 + AluJo SINE Alu 1 292 -20 2027 120 3 3 chr12 3400326 3400617 -140385838 + AluSg SINE Alu 3 293 -17 239 224 53 13 chr12 3400620 3400696 -140385759 + MER91C DNA MER1_type 62 140 0 2477 62 0 0 chr12 3401749 3402053 -140384402 + AluY SINE Alu 1 304 -7 916 140 17 51 chr12 3402419 3402597 -140383858 + AluSg/x SINE Alu 129 300 -10 307 279 43 91 chr12 3402606 3402814 -140383641 + HAL1 LINE L1 1557 1754 -753 833 127 0 0 chr12 3402881 3403007 -140383448 + FLAM_C SINE Alu 1 126 -17 32 57 0 0 chr12 3403172 3403225 -140383230 + AT_rich Low_complexity Low_complexity 1 53 0 1248 192 54 23 chr12 3456888 3457148 -140329307 + AluJo SINE Alu 34 301 -11 224 307 29 21 chr12 3457912 3458052 -140328403 + (CCCCAG)n Simple_repeat Simple_repeat 2 142 0 284 286 20 10 chr12 3459635 3459733 -140326722 + MIR SINE MIR 148 246 -16 310 197 0 15 chr12 3460148 3460214 -140326241 - L3 LINE CR1 -116 1461 1397 356 299 81 40 chr12 3461282 3461456 -140324999 + MIR SINE MIR 80 260 -2 198 337 51 10 chr12 3462363 3462461 -140323994 + MIR SINE MIR 128 229 -33 190 330 65 60 chr12 3462473 3462658 -140323797 - L2 LINE L2 -15 3257 3072 1218 308 63 9 chr12 3462691 3463350 -140323105 - L2 LINE L2 -2 3311 2614 289 309 41 0 chr12 3463489 3463586 -140322869 - L2 LINE L2 -710 2604 2504 286 238 107 0 chr12 3465150 3465234 -140321221 + MIR3 SINE MIR 84 176 -32 1193 178 53 0 chr12 3465284 3465492 -140320963 + MER20 DNA MER1_type 1 219 0 228 268 14 14 chr12 3466307 3466378 -140320077 + L2 LINE L2 3203 3273 -40 323 95 5 0 chr12 3466968 3467028 -140319427 + Alu SINE Alu 1 43 -265 325 282 17 86 chr12 3467934 3468108 -140318347 - L3 LINE CR1 -125 1452 1291 471 287 98 6 chr12 3468118 3468282 -140318173 - L3 LINE CR1 -486 1091 913 232 46 32 208 chr12 3470083 3470299 -140316156 + (CAGGG)n Simple_repeat Simple_repeat 2 179 0 211 329 106 29 chr12 3472105 3472275 -140314180 + MIR SINE MIR 80 262 0 409 316 75 0 chr12 3473127 3473260 -140313195 - MIR SINE MIR -20 242 100 330 298 124 8 chr12 3473583 3473704 -140312751 - MIR SINE MIR -79 183 49 470 322 103 14 chr12 3474608 3474822 -140311633 + MIR SINE MIR 29 261 -1 431 321 45 0 chr12 3476211 3476345 -140310110 + MIR3 SINE MIR 69 208 0 291 254 156 18 chr12 3476348 3476486 -140309969 - MIR SINE MIR -65 143 35 188 227 114 0 chr12 3476595 3476639 -140309816 - MIR SINE MIR -76 132 84 637 239 49 117 chr12 3478065 3478329 -140308126 + MIR SINE MIR 15 260 -2 190 309 160 11 chr12 3478903 3478997 -140307458 + L2 LINE L2 3201 3308 -5 316 311 57 0 chr12 3479414 3479520 -140306935 + L2 LINE L2 2268 2379 -935 431 302 242 14 chr12 3479544 3480119 -140306336 + L2 LINE L2 2498 3311 -2 291 300 44 0 chr12 3480357 3480447 -140306008 + MIR SINE MIR 77 170 -92 352 381 22 0 chr12 3484817 3484956 -140301499 + MIR SINE MIR 121 262 0 195 376 30 0 chr12 3485382 3485483 -140300972 - MIR SINE MIR -9 253 150 193 268 115 70 chr12 3485564 3485721 -140300734 - MER5A DNA MER1_type -23 166 3 538 234 86 25 chr12 3486003 3486200 -140300255 - MIR SINE MIR -20 242 34 329 271 30 8 chr12 3487929 3488062 -140298393 + L1ME4a LINE L1 5981 6116 -5 250 316 13 0 chr12 3488507 3488586 -140297869 + GA-rich Low_complexity Low_complexity 3 82 0 359 330 54 0 chr12 3489699 3489811 -140296644 + MIR SINE MIR 30 147 -61 223 323 50 10 chr12 3490858 3490957 -140295498 + MIR SINE MIR 104 206 -56 183 351 108 18 chr12 3492102 3492213 -140294242 - L3b LINE CR1 -2 1581 1461 2180 149 96 15 chr12 3493181 3493577 -140292878 + MSTA LTR MaLR 1 428 0 404 318 80 17 chr12 3496091 3496267 -140290188 + MIR SINE MIR 70 256 -6 201 306 32 0 chr12 3496759 3496821 -140289634 - MIR SINE MIR -87 121 58 336 341 61 12 chr12 3496975 3497139 -140289316 + MIR3 SINE MIR 1 172 -36 793 336 48 12 chr12 3498271 3498685 -140287770 - L1ME LINE L1 -338 5783 5355 250 306 24 12 chr12 3498831 3498916 -140287539 + MIR SINE MIR 1 86 -176 365 291 88 20 chr12 3498934 3499082 -140287373 + MIR SINE MIR 3 160 -102 442 305 64 11 chr12 3499311 3499498 -140286957 + L1MC5 LINE L1 7729 7925 -36 211 288 62 12 chr12 3499805 3499885 -140286570 + MIR SINE MIR 24 107 -101 338 292 84 8 chr12 3501252 3501404 -140285051 + MIR3 SINE MIR 4 146 -62 228 217 22 0 chr12 3501477 3501523 -140284932 + G-rich Low_complexity Low_complexity 1 47 0 220 336 89 59 chr12 3502405 3502676 -140283779 + L2 LINE L2 2973 3251 -21 725 286 95 9 chr12 3503020 3503251 -140283204 + MIR SINE MIR 12 262 0 519 346 13 34 chr12 3503188 3503425 -140283030 - MIR SINE MIR -16 246 15 * 489 303 82 26 chr12 3504014 3504209 -140282246 - MIR SINE MIR -56 206 1 492 18 0 0 chr12 3504266 3504323 -140282132 + (TA)n Simple_repeat Simple_repeat 1 57 0 2345 51 0 69 chr12 3504328 3504662 -140281793 - AluY SINE Alu 0 311 1 194 265 0 82 chr12 3505064 3505162 -140281293 - L2 LINE L2 -19 3294 3205 287 285 46 46 chr12 3505748 3505878 -140280577 + L1ME3A LINE L1 5610 5739 -423 377 294 12 12 chr12 3505882 3506045 -140280410 + L1ME3A LINE L1 5788 5950 -220 234 339 57 24 chr12 3506518 3506752 -140279703 + L3 LINE CR1 1190 1471 -106 374 314 52 7 chr12 3506837 3506990 -140279465 + MER5B DNA MER1_type 17 176 -2 274 271 112 9 chr12 3508222 3508329 -140278126 - MIR SINE MIR -71 137 20 23 0 0 0 chr12 3508417 3508440 -140278015 + AT_rich Low_complexity Low_complexity 1 23 0 1150 204 109 48 chr12 3510374 3510814 -140275641 + MLT1C LTR MaLR 1 467 0 495 279 127 33 chr12 3511003 3511157 -140275298 + MIR SINE MIR 15 190 -72 1729 164 0 50 chr12 3511157 3511474 -140274981 - AluJo SINE Alu -11 301 1 495 279 127 33 chr12 3511474 3511548 -140274907 + MIR SINE MIR 190 256 -6 519 202 0 0 chr12 3512643 3512727 -140273728 + FRAM/FAM SINE Alu 1 83 -93 332 281 0 0 chr12 3512731 3512795 -140273660 + L1MC4 LINE L1 6638 6701 -1341 774 32 0 0 chr12 3512795 3512888 -140273567 + (CA)n Simple_repeat Simple_repeat 2 94 0 600 123 0 0 chr12 3512899 3512980 -140273475 - FLAM_A SINE Alu -18 124 44 347 342 37 43 chr12 3514981 3515168 -140271287 + MIR3 SINE MIR 16 201 -7 199 354 62 26 chr12 3515316 3515429 -140271026 + L3b LINE CR1 1269 1385 -198 573 263 13 13 chr12 3515530 3515686 -140270769 + MER5B DNA MER1_type 10 165 -13 214 309 60 48 chr12 3515813 3515897 -140270558 - MIR SINE MIR -70 192 108 267 323 30 20 chr12 3517313 3517412 -140269043 + L2 LINE L2 3169 3268 -4 1748 163 51 0 chr12 3517599 3517875 -140268580 + AluJo SINE Alu 1 290 -22 2175 124 0 3 chr12 3517882 3518188 -140268267 + AluSx SINE Alu 1 305 -7 186 86 0 86 chr12 3519219 3519254 -140267201 + MIR SINE MIR 11 42 -220 2135 103 34 0 chr12 3519377 3519668 -140266787 - AluSq SINE Alu -12 301 1 1412 62 42 10 chr12 3519677 3519869 -140266586 - L1PA7 LINE L1 0 6154 5957 323 414 53 10 chr12 3521523 3521731 -140264724 - MIR SINE MIR -23 239 23 866 236 10 10 chr12 3525349 3525548 -140260907 - MIR3 SINE MIR -5 203 5 801 153 30 0 chr12 3526968 3527099 -140259356 + AluJo SINE Alu 1 135 -177 465 226 140 12 chr12 3527102 3527266 -140259189 + L1ME3A LINE L1 4407 4591 -1555 2113 134 0 0 chr12 3527271 3527578 -140258877 + AluSg SINE Alu 1 307 -3 517 281 118 52 chr12 3527946 3528495 -140257960 + L1ME3A LINE L1 4549 5060 -1273 1967 152 0 7 chr12 3528495 3528804 -140257651 + AluJo SINE Alu 1 307 -5 517 281 118 52 chr12 3528804 3529340 -140257115 + L1ME3A LINE L1 5060 5659 -674 1304 65 12 0 chr12 3529384 3529554 -140256901 - AluY SINE Alu -7 304 133 2667 36 0 0 chr12 3529554 3529863 -140256592 - AluY SINE Alu -2 309 1 220 222 37 0 chr12 3530008 3530062 -140256393 + MER5C DNA MER1_type 267 322 -2 544 339 60 3 chr12 3530062 3530277 -140256178 + L1ME3A LINE L1 5647 5885 -285 2331 97 0 0 chr12 3530277 3530585 -140255870 - AluSg SINE Alu -1 309 2 544 339 60 3 chr12 3530585 3530667 -140255788 + L1ME3A LINE L1 5885 5961 -209 183 42 0 0 chr12 3532937 3532961 -140253494 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 221 208 0 21 chr12 3533260 3533308 -140253147 + L2 LINE L2 3267 3313 0 234 176 14 95 chr12 3536229 3536303 -140250152 - L2 LINE L2 0 3313 3246 370 283 42 0 chr12 3536936 3537056 -140249399 - MIR3 SINE MIR -42 166 42 21 36 0 0 chr12 3538694 3538722 -140247733 + GC_rich Low_complexity Low_complexity 1 28 0 272 274 88 35 chr12 3540226 3540339 -140246116 + L2 LINE L2 3154 3272 0 248 260 62 21 chr12 3540413 3540509 -140245946 - L2 LINE L2 -35 3237 3138 447 175 0 52 chr12 3540644 3540938 -140245517 + (CTGTG)n Simple_repeat Simple_repeat 1 278 0 270 130 0 172 chr12 3540947 3541162 -140245293 + (TGG)n Simple_repeat Simple_repeat 3 180 0 * 338 176 0 78 chr12 3541069 3541262 -140245193 + (CTGTG)n Simple_repeat Simple_repeat 3 180 0 * 451 160 0 103 chr12 3541199 3541599 -140244856 + (TGG)n Simple_repeat Simple_repeat 1 358 0 342 155 0 82 chr12 3541647 3541841 -140244614 + (CTGTG)n Simple_repeat Simple_repeat 3 180 0 460 288 25 16 chr12 3542312 3542497 -140243958 + MIR SINE MIR 30 218 -44 397 211 0 11 chr12 3542968 3543058 -140243397 - MIR SINE MIR -54 208 120 1934 162 3 0 chr12 3544854 3545157 -140241298 + AluJb SINE Alu 1 304 -8 216 352 39 31 chr12 3545284 3545412 -140241043 + L2 LINE L2 3128 3256 -16 206 265 162 0 chr12 3545598 3545666 -140240789 + L2 LINE L2 3193 3271 -42 229 265 0 0 chr12 3545667 3545716 -140240739 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 279 296 68 74 chr12 3546361 3546523 -140239932 + MIR SINE MIR 6 166 -96 543 307 131 65 chr12 3546742 3547873 -140238582 + L2 LINE L2 2127 3310 -3 315 269 130 9 chr12 3547986 3548094 -140238361 + MIR3 SINE MIR 72 192 -16 385 331 163 16 chr12 3548384 3548704 -140237751 + L2 LINE L2 2906 3272 0 234 0 0 0 chr12 3551284 3551310 -140235145 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 196 118 0 0 chr12 3551316 3551350 -140235105 + MIR SINE MIR 116 149 -113 326 260 120 0 chr12 3551933 3552033 -140234422 - MIR SINE MIR -63 145 34 655 239 133 16 chr12 3552443 3552631 -140233824 + MER63A DNA MER1_type 1 210 0 714 257 236 3 chr12 3552866 3552963 -140233492 + L2 LINE L2 2708 2781 -532 282 29 0 0 chr12 3552963 3552998 -140233457 + (CA)n Simple_repeat Simple_repeat 2 36 0 714 257 236 3 chr12 3552998 3553248 -140233207 + L2 LINE L2 2781 3124 -189 236 284 99 0 chr12 3553236 3553317 -140233138 + L2 LINE L2 3225 3313 0 * 237 288 30 0 chr12 3554050 3554116 -140232339 + MER4A LTR ERV1 26 93 -571 267 231 15 15 chr12 3554340 3554405 -140232050 + L2 LINE L2 3206 3270 -2 242 160 20 0 chr12 3555066 3555116 -140231339 + CT-rich Low_complexity Low_complexity 1 51 0 1809 156 16 25 chr12 3555116 3555430 -140231025 - AluJb SINE Alu -1 311 1 209 265 169 36 chr12 3555694 3555777 -140230678 - MIR SINE MIR -95 113 20 350 345 63 11 chr12 3555805 3555979 -140230476 + MER5A DNA MER1_type 7 189 0 234 295 80 36 chr12 3556895 3557007 -140229448 + L2 LINE L2 3197 3313 0 331 306 139 6 chr12 3557769 3557942 -140228513 + MIR SINE MIR 2 197 -65 278 271 131 14 chr12 3558085 3558244 -140228211 + MIR SINE MIR 20 177 -72 381 318 94 5 chr12 3558351 3558574 -140227881 - L3 LINE CR1 -254 1323 1081 182 240 20 0 chr12 3558593 3558643 -140227812 + L2 LINE L2 3202 3252 -20 573 258 96 40 chr12 3558971 3559046 -140227409 - MER112 DNA MER1_type 0 260 191 1313 196 154 0 chr12 3559046 3559306 -140227149 - AluJo SINE Alu -2 300 1 573 258 96 40 chr12 3559306 3559428 -140227027 - MER112 DNA MER1_type -69 191 52 258 314 204 0 chr12 3560032 3560204 -140226251 + L3b LINE CR1 1223 1429 -154 212 280 0 0 chr12 3560877 3560927 -140225528 - L2 LINE L2 -12 3301 3252 2184 104 0 10 chr12 3560950 3561259 -140225196 + AluSq SINE Alu 1 306 -7 1996 132 0 0 chr12 3561808 3562097 -140224358 + AluSx SINE Alu 1 289 -23 2190 90 0 0 chr12 3562104 3562392 -140224063 + AluY SINE Alu 1 288 -23 23 0 0 0 chr12 3562423 3562446 -140224009 + AT_rich Low_complexity Low_complexity 1 23 0 203 216 20 0 chr12 3563363 3563414 -140223041 + L2 LINE L2 3190 3241 -31 2558 39 0 0 chr12 3564659 3564967 -140221488 + AluY SINE Alu 1 308 -3 269 272 22 88 chr12 3565095 3565174 -140221281 - MIR3 SINE MIR -4 204 136 1854 144 28 0 chr12 3565174 3565465 -140220990 + AluJo SINE Alu 1 299 -13 269 272 22 88 chr12 3565465 3565521 -140220934 - MIR3 SINE MIR -72 136 78 208 227 23 0 chr12 3565684 3565728 -140220727 + GA-rich Low_complexity Low_complexity 1 45 0 1401 169 64 14 chr12 3565747 3566042 -140220413 + AluJo SINE Alu 1 310 -2 204 359 66 0 chr12 3566098 3566265 -140220190 - L2 LINE L2 -222 3050 2873 407 262 100 57 chr12 3568181 3568410 -140218045 - L2 LINE L2 -34 3279 3041 271 333 16 32 chr12 3568420 3568543 -140217912 - L2 LINE L2 -655 2659 2539 189 313 90 0 chr12 3568564 3568631 -140217824 - L2 LINE L2 -939 2375 2303 569 231 137 40 chr12 3569341 3569582 -140216873 - MIR SINE MIR -5 257 3 308 305 58 58 chr12 3569976 3570150 -140216305 - MIR SINE MIR -41 221 48 247 145 177 16 chr12 3572253 3572315 -140214140 + L1P2 LINE L1 5392 5463 -692 * 1102 244 74 36 chr12 3572290 3572444 -140214011 + L1ME3A LINE L1 5791 5938 -232 2376 90 0 0 chr12 3572444 3572756 -140213699 + AluSx SINE Alu 1 312 0 1102 244 74 36 chr12 3572756 3572966 -140213489 + L1ME3A LINE L1 5938 6169 -1 251 241 63 0 chr12 3573074 3573153 -140213302 + MIR3 SINE MIR 125 208 0 222 171 0 0 chr12 3573919 3573960 -140212495 + MIR SINE MIR 109 149 -113 341 286 184 24 chr12 3574543 3574711 -140211744 - MIR3 SINE MIR 0 208 14 358 338 14 0 chr12 3574728 3574876 -140211579 + MER117 DNA MER1_type 21 170 -27 206 333 0 0 chr12 3575133 3575187 -140211268 - L2 LINE L2 0 3272 3219 248 244 179 0 chr12 3576366 3576444 -140210011 - L2 LINE L2 0 3313 3222 2093 132 80 66 chr12 3577183 3577563 -140208892 - MSTB1 LTR MaLR 0 432 59 817 204 7 7 chr12 3577563 3577715 -140208740 + FRAM SINE Alu 3 154 -12 426 39 0 0 chr12 3577716 3577768 -140208687 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 2093 132 80 66 chr12 3577768 3577811 -140208644 - MSTB1 LTR MaLR -372 60 1 3905 152 47 46 chr12 3578051 3578308 -140208147 + L1MB8 LINE L1 4904 5159 -1019 2142 95 3 7 chr12 3578308 3578603 -140207852 - AluSp SINE Alu -19 294 1 3905 152 47 46 chr12 3578603 3579581 -140206874 + L1MB8 LINE L1 5159 6128 -50 1966 135 47 75 chr12 3579592 3579828 -140206627 - MLT1B LTR MaLR 0 390 168 710 203 0 0 chr12 3579828 3579956 -140206499 - FLAM_C SINE Alu -5 128 1 1966 135 47 75 chr12 3579956 3580120 -140206335 - MLT1B LTR MaLR -222 168 1 518 246 42 36 chr12 3580186 3580353 -140206102 - MIR3 SINE MIR -36 172 5 2285 89 0 0 chr12 3580797 3581088 -140205367 - AluSg SINE Alu -8 302 12 222 315 111 9 chr12 3581799 3581907 -140204548 + MIR SINE MIR 20 138 -70 398 283 215 16 chr12 3581934 3582125 -140204330 - MIR SINE MIR -16 246 18 2357 60 0 7 chr12 3582140 3582438 -140204017 + AluY SINE Alu 1 296 -15 2144 108 0 19 chr12 3582733 3583047 -140203408 + AluSx SINE Alu 1 308 -4 875 196 31 18 chr12 3583925 3584088 -140202367 - FRAM SINE Alu -11 165 1 644 280 18 0 chr12 3584350 3584518 -140201937 + Charlie8 DNA MER1_type 1 171 -2246 183 156 0 0 chr12 3584936 3584968 -140201487 + GA-rich Low_complexity Low_complexity 1 32 0 291 28 0 0 chr12 3585494 3585530 -140200925 + (CA)n Simple_repeat Simple_repeat 1 36 0 216 67 0 0 chr12 3585664 3585694 -140200761 + (CA)n Simple_repeat Simple_repeat 1 30 0 210 203 0 34 chr12 3585789 3585848 -140200607 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 189 0 0 0 chr12 3586452 3586473 -140199982 + (CCA)n Simple_repeat Simple_repeat 3 23 0 2190 108 0 7 chr12 3586653 3586960 -140199495 + AluSx SINE Alu 1 305 -7 1196 85 0 0 chr12 3587601 3587754 -140198701 - AluSg/x SINE Alu -13 297 145 277 279 0 0 chr12 3588320 3588388 -140198067 + (CA)n Simple_repeat Simple_repeat 1 68 0 257 250 0 0 chr12 3589199 3589255 -140197200 + MIR SINE MIR 73 128 -80 395 348 66 22 chr12 3589346 3589573 -140196882 + L2 LINE L2 3036 3272 0 495 295 8 14 chr12 3589665 3589833 -140196622 - MER5A DNA MER1_type -10 179 1 313 235 29 0 chr12 3591318 3591386 -140195069 + MIR3 SINE MIR 115 184 -24 759 238 11 32 chr12 3591772 3591961 -140194494 - MER3 DNA MER1_type -2 207 23 443 322 78 6 chr12 3592500 3592680 -140193775 - MIR SINE MIR -56 206 14 337 257 22 81 chr12 3592964 3593100 -140193355 + L2 LINE L2 3155 3282 -31 487 261 29 7 chr12 3593357 3593495 -140192960 - MIR3 SINE MIR -3 205 65 694 268 91 25 chr12 3594872 3595115 -140191340 - MLT1C LTR MaLR -9 458 200 2004 116 14 0 chr12 3595140 3595424 -140191031 + AluSx SINE Alu 1 288 -24 248 0 31 0 chr12 3595427 3595459 -140190996 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 3241 196 33 130 chr12 3595460 3596776 -140189679 + L1MC4a LINE L1 6545 7721 -87 405 258 172 8 chr12 3597402 3597530 -140188925 + MIR SINE MIR 81 229 -33 200 285 203 32 chr12 3599294 3599417 -140187038 - MER5C DNA MER1_type -177 147 4 1695 145 81 7 chr12 3599693 3599976 -140186479 + AluJb SINE Alu 1 304 -8 1235 144 24 124 chr12 3600781 3601079 -140185376 + AluJb SINE Alu 35 302 -10 217 250 36 12 chr12 3601482 3601566 -140184889 - MIR SINE MIR -84 124 39 320 282 29 10 chr12 3603036 3603139 -140183316 + MIR SINE MIR 103 207 -55 218 179 0 54 chr12 3603226 3603282 -140183173 + MIR SINE MIR 28 80 -182 1748 156 0 11 chr12 3604155 3604438 -140182017 + AluJo SINE Alu 1 280 -32 434 276 115 29 chr12 3605025 3605199 -140181256 + MIR3 SINE MIR 20 208 0 235 311 141 67 chr12 3605536 3605671 -140180784 - MIR SINE MIR -80 182 38 22 0 0 0 chr12 3606143 3606165 -140180290 + AT_rich Low_complexity Low_complexity 1 22 0 244 383 57 19 chr12 3606796 3607005 -140179450 + L3 LINE CR1 986 1202 -375 3568 178 30 14 chr12 3607009 3607781 -140178674 + L1MB5 LINE L1 5391 6174 0 186 394 0 39 chr12 3607798 3607902 -140178553 + L3 LINE CR1 1222 1321 -256 484 313 60 20 chr12 3607936 3608137 -140178318 - MIR SINE MIR -1 261 53 345 294 161 6 chr12 3608224 3608404 -140178051 + MIR SINE MIR 55 262 0 729 266 22 5 chr12 3608758 3608942 -140177513 - MIR SINE MIR -3 259 73 760 329 29 0 chr12 3609822 3610068 -140176387 - MIR SINE MIR -6 256 4 2470 159 49 2 chr12 3610334 3610780 -140175675 + L1MB3 LINE L1 5715 6181 -2 778 142 18 0 chr12 3610983 3611096 -140175359 - FLAM_A SINE Alu -18 115 1 1074 191 15 0 chr12 3611410 3611609 -140174846 + Tigger3b DNA MER2_type 4 205 -1026 630 149 0 47 chr12 3611635 3611742 -140174713 + FLAM_A SINE Alu 20 121 -21 1202 128 45 53 chr12 3611752 3611886 -140174569 + Tigger3b DNA MER2_type 204 337 -2691 2364 71 0 0 chr12 3611886 3612180 -140174275 + AluY SINE Alu 1 294 -17 1202 128 45 53 chr12 3612180 3612310 -140174145 + Tigger3b DNA MER2_type 337 466 -765 812 108 0 0 chr12 3612311 3612422 -140174033 - FLAM_C SINE Alu -32 111 1 29 0 0 0 chr12 3612424 3612453 -140174002 + AT_rich Low_complexity Low_complexity 1 29 0 630 141 11 0 chr12 3612486 3612578 -140173877 + FLAM_A SINE Alu 20 112 -30 622 106 0 53 chr12 3612588 3612629 -140173826 + MSTA LTR MaLR 322 364 -64 1558 158 102 11 chr12 3612629 3612914 -140173541 - AluJo SINE Alu -1 311 1 622 106 0 53 chr12 3612914 3612985 -140173470 + MSTA LTR MaLR 364 428 0 * 1290 157 23 35 chr12 3612985 3613313 -140173142 + Tigger3(Golem) DNA MER2_type 2732 3038 0 442 266 179 6 chr12 3613333 3613506 -140172949 - MIR SINE MIR -49 213 11 23 0 0 0 chr12 3614029 3614052 -140172403 + AT_rich Low_complexity Low_complexity 1 23 0 356 256 128 17 chr12 3614272 3614389 -140172066 - L1ME4a LINE L1 -28 6093 5964 388 272 44 34 chr12 3614407 3614457 -140171998 - L1ME4a LINE L1 -216 5905 5857 1888 159 0 16 chr12 3614457 3614765 -140171690 - AluJo SINE Alu -9 303 1 388 272 44 34 chr12 3614765 3614831 -140171624 - L1ME4a LINE L1 -264 5857 5793 1858 94 87 11 chr12 3614831 3615108 -140171347 + AluSp SINE Alu 1 298 -15 388 272 44 34 chr12 3615108 3615196 -140171259 - L1ME4a LINE L1 -328 5793 5698 542 281 41 12 chr12 3615729 3615900 -140170555 + MIR SINE MIR 84 259 -3 820 221 234 0 chr12 3616982 3617208 -140169247 + AluSg1 SINE Alu 1 279 -30 2194 54 54 0 chr12 3617209 3617486 -140168969 - AluY SINE Alu -19 292 1 352 298 122 50 chr12 3617543 3617646 -140168809 + MIR SINE MIR 6 100 -162 542 260 133 84 chr12 3617646 3617863 -140168592 - MER102b DNA MER1_type -1087 341 101 1944 145 0 55 chr12 3617863 3618188 -140168267 + AluJb SINE Alu 1 307 -5 542 260 133 84 chr12 3618188 3618293 -140168162 - MER102b DNA MER1_type -1327 101 3 352 298 122 50 chr12 3618293 3618427 -140168028 + MIR SINE MIR 100 260 -2 364 274 85 13 chr12 3618433 3618586 -140167869 - MIR3 SINE MIR -22 186 23 194 370 55 24 chr12 3618663 3618790 -140167665 + L2 LINE L2 3140 3270 -2 478 342 114 22 chr12 3621795 3622472 -140163983 - L2 LINE L2 -14 3258 2473 368 343 122 9 chr12 3622756 3622969 -140163486 + MIR SINE MIR 20 256 -6 1979 166 8 45 chr12 3623766 3624051 -140162404 + MER47A DNA MER2_type 1 270 -2053 2349 78 0 0 chr12 3624051 3624346 -140162109 - AluY SINE Alu -16 295 1 1979 166 8 45 chr12 3624346 3624439 -140162016 + MER47A DNA MER2_type 270 365 -1 2202 97 10 3 chr12 3624883 3625193 -140161262 - AluSq SINE Alu -1 312 1 840 142 0 8 chr12 3626990 3627124 -140159331 + FLAM_C SINE Alu 1 133 -10 216 0 0 0 chr12 3627281 3627305 -140159150 + (CAGGG)n Simple_repeat Simple_repeat 1 24 0 621 184 155 30 chr12 3627476 3627644 -140158811 + MER5A DNA MER1_type 1 189 0 331 307 150 13 chr12 3628633 3628786 -140157669 + MIR SINE MIR 86 259 -3 1817 173 0 3 chr12 3630771 3631072 -140155383 + AluJb SINE Alu 1 300 -12 387 242 44 0 chr12 3632048 3632139 -140154316 - MER5A DNA MER1_type -94 95 1 243 256 13 26 chr12 3632206 3632284 -140154171 - MER5A DNA MER1_type -93 96 20 216 0 0 0 chr12 3634945 3634969 -140151486 + (T)n Simple_repeat Simple_repeat 1 24 0 477 312 91 9 chr12 3635012 3635243 -140151212 - MIR SINE MIR -12 250 1 318 285 49 41 chr12 3635424 3635547 -140150908 + MIR SINE MIR 69 192 -70 450 288 142 14 chr12 3635595 3635814 -140150641 - MIR SINE MIR -15 247 1 219 186 0 0 chr12 3636087 3636130 -140150325 + (CA)n Simple_repeat Simple_repeat 1 43 0 1474 159 69 0 chr12 3636147 3636423 -140150032 + MER2 DNA MER2_type 48 342 -3 531 92 0 0 chr12 3636427 3636514 -140149941 + (CA)n Simple_repeat Simple_repeat 2 88 0 368 294 10 0 chr12 3638632 3638734 -140147721 + MIR SINE MIR 128 230 -32 818 250 88 0 chr12 3639613 3639805 -140146650 + MER3 DNA MER1_type 1 209 0 480 249 102 2 chr12 3640218 3640397 -140146058 - MIR SINE MIR -41 221 28 608 300 113 54 chr12 3641689 3642079 -140144376 - L2 LINE L2 0 3272 2860 449 272 105 42 chr12 3643328 3643519 -140142936 - MER115 DNA AcHobo -490 203 1 181 220 51 17 chr12 3645099 3645158 -140141297 + L2 LINE L2 2908 2968 -346 1095 186 48 5 chr12 3645711 3645921 -140140534 + MER20 DNA MER1_type 1 219 0 568 300 18 66 chr12 3646821 3647094 -140139361 - MIR SINE MIR 0 262 3 215 309 47 40 chr12 3647690 3647839 -140138616 + L2 LINE L2 2898 3047 -225 696 161 23 31 chr12 3649533 3649663 -140136792 + FLAM_C SINE Alu 15 143 0 315 0 0 0 chr12 3649716 3649751 -140136704 + (TG)n Simple_repeat Simple_repeat 1 35 0 240 298 64 0 chr12 3652538 3652632 -140133823 + (CATG)n Simple_repeat Simple_repeat 3 102 0 212 317 0 0 chr12 3653309 3653369 -140133086 + L3 LINE CR1 1511 1570 -7 1315 214 101 14 chr12 3653846 3654201 -140132254 - MER88 LTR ERVL 0 464 79 277 340 62 7 chr12 3654259 3654403 -140132052 + MIR SINE MIR 83 234 -28 1090 209 78 76 chr12 3655870 3656292 -140130163 + L1MC5 LINE L1 7316 7738 -223 382 250 40 75 chr12 3656280 3656532 -140129923 + L1MC5 LINE L1 7668 7910 -51 * 603 222 6 11 chr12 3656577 3656753 -140129702 + GA-rich Low_complexity Low_complexity 5 179 0 501 289 115 9 chr12 3657213 3657431 -140129024 - MIR SINE MIR -12 250 10 307 258 225 0 chr12 3657636 3657756 -140128699 - MIR3 SINE MIR -59 149 3 351 296 31 0 chr12 3658516 3658614 -140127841 - MIR SINE MIR -114 148 48 737 214 40 23 chr12 3658791 3658964 -140127491 + MER104 DNA MER2_type 1 176 -4 369 311 19 0 chr12 3659112 3659218 -140127237 + MIR SINE MIR 43 150 -58 445 197 242 0 chr12 3659797 3659929 -140126526 + MER5B DNA MER1_type 15 178 0 567 295 6 22 chr12 3660664 3660847 -140125608 + MIR3 SINE MIR 1 180 -28 183 304 0 38 chr12 3661713 3661792 -140124663 + L2 LINE L2 2409 2484 -830 182 306 69 38 chr12 3661888 3662048 -140124407 + L2 LINE L2 2718 2882 -432 328 306 45 0 chr12 3662108 3662219 -140124236 + MIR SINE MIR 6 121 -141 244 333 81 49 chr12 3662743 3662989 -140123466 - L2 LINE L2 -1 3271 3018 213 175 0 0 chr12 3663701 3663741 -140122714 + GA-rich Low_complexity Low_complexity 1 40 0 478 299 51 13 chr12 3663741 3663898 -140122557 - MIR3 SINE MIR -29 179 17 2610 79 56 0 chr12 3664078 3664433 -140122022 + THE1C LTR MaLR 1 375 0 426 212 62 0 chr12 3665261 3665374 -140121081 - MER112 DNA MER1_type -8 252 133 2125 167 29 31 chr12 3665375 3665931 -140120524 - MLT2A2 LTR ERVL 0 554 1 363 288 46 86 chr12 3666092 3666242 -140120213 - MIR SINE MIR -1 261 108 1330 206 80 55 chr12 3666242 3666607 -140119848 - MLT1A2 LTR MaLR 0 374 1 363 288 46 86 chr12 3666607 3666693 -140119762 - MIR SINE MIR -154 108 20 290 297 99 0 chr12 3666927 3667038 -140119417 + L2 LINE L2 3188 3309 -4 262 280 102 8 chr12 3667057 3667175 -140119280 + MIR SINE MIR 25 153 -109 523 196 11 0 chr12 3668243 3668335 -140118120 - MER81 DNA DNA -21 93 1 595 344 130 4 chr12 3668393 3668861 -140117594 + L2 LINE L2 2100 2626 -688 249 285 39 54 chr12 3668866 3668900 -140117555 + L1ME4a LINE L1 5992 6025 -96 1942 225 44 24 chr12 3668900 3669358 -140117097 + MLT1C LTR MaLR 1 467 0 249 285 39 54 chr12 3669358 3669453 -140117002 + L1ME4a LINE L1 6025 6119 -2 1055 213 123 55 chr12 3669547 3669966 -140116489 + MER110A LTR ERV1 67 491 0 263 305 144 0 chr12 3669999 3670117 -140116338 - MIR SINE MIR -112 150 16 235 147 0 0 chr12 3670251 3670285 -140116170 + MER54A LTR ERVL 532 565 -336 240 35 0 0 chr12 3671220 3671249 -140115206 + (TC)n Simple_repeat Simple_repeat 1 29 0 876 211 83 13 chr12 3671456 3671684 -140114771 + MIR SINE MIR 19 262 0 260 235 74 74 chr12 3672770 3672851 -140113604 - MIR3 SINE MIR -5 203 123 469 153 12 12 chr12 3673012 3673097 -140113358 + MIR SINE MIR 34 118 -144 750 260 72 13 chr12 3673102 3673337 -140113118 - MIR SINE MIR -11 251 3 710 274 29 20 chr12 3673463 3673667 -140112788 + MLT1J LTR MaLR 4 209 -302 831 325 6 0 chr12 3673667 3674005 -140112450 - L1M4 LINE L1 -3427 2719 2380 2191 88 0 20 chr12 3674032 3674329 -140112126 - AluSp SINE Alu -22 291 1 986 242 30 30 chr12 3674330 3674594 -140111861 + MLT1J LTR MaLR 199 462 -49 583 229 90 12 chr12 3676420 3676548 -140109907 - MER5A DNA MER1_type 0 189 44 420 227 27 36 chr12 3676548 3676658 -140109797 + MER81 DNA DNA 2 110 -4 583 229 90 12 chr12 3676658 3676695 -140109760 - MER5A DNA MER1_type -145 44 11 221 100 0 50 chr12 3676700 3676740 -140109715 + L3 LINE CR1 1532 1569 -8 362 295 76 88 chr12 3677391 3677801 -140108654 - L2 LINE L2 -1 3271 2867 186 43 0 0 chr12 3677989 3678012 -140108443 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1521 150 8 0 chr12 3678013 3678266 -140108189 - L1MA8 LINE L1 -402 5889 5635 1377 131 71 138 chr12 3678248 3678494 -140107961 + L1MA8 LINE L1 5848 6109 -182 * 1578 78 65 0 chr12 3678494 3678711 -140107744 - L1PA6 LINE L1 0 6154 5924 2417 60 0 13 chr12 3678716 3679017 -140107438 - AluY SINE Alu -7 304 8 1377 131 71 138 chr12 3679017 3679077 -140107378 + L1MA8 LINE L1 6113 6175 -116 353 22 0 0 chr12 3679077 3679123 -140107332 - MADE1 DNA Mariner 0 80 35 1377 131 71 138 chr12 3679123 3679229 -140107226 + L1MA8 LINE L1 6175 6281 -10 230 215 129 21 chr12 3679713 3679806 -140106649 - MIR SINE MIR -86 122 20 479 268 56 0 chr12 3679838 3679980 -140106475 - MIR SINE MIR -1 261 112 1131 83 0 0 chr12 3680350 3680506 -140105949 + (TTCC)n Simple_repeat Simple_repeat 1 156 0 1783 135 0 0 chr12 3680514 3680774 -140105681 - AluSx SINE Alu -52 260 1 445 269 27 54 chr12 3681266 3681415 -140105040 + MIR SINE MIR 48 192 -70 388 212 59 34 chr12 3682295 3682317 -140104138 - MIR SINE MIR -32 230 210 1393 184 34 13 chr12 3682317 3682551 -140103904 + MER8 DNA MER2_type 1 239 0 388 212 59 34 chr12 3682551 3682646 -140103809 - MIR SINE MIR -52 210 110 281 257 40 0 chr12 3682648 3682722 -140103733 - MER94 DNA DNA -33 101 25 247 278 56 0 chr12 3683838 3683910 -140102545 - MIR SINE MIR -70 192 117 420 240 48 10 chr12 3684239 3684343 -140102112 - MER91C DNA MER1_type -30 110 3 638 263 78 10 chr12 3684724 3684917 -140101538 + MLT1J LTR MaLR 2 175 -275 812 213 41 0 chr12 3685023 3685192 -140101263 - MER5A DNA MER1_type -1 188 13 414 191 77 101 chr12 3685192 3685360 -140101095 + MLT1J LTR MaLR 312 475 -36 249 326 130 19 chr12 3685654 3685869 -140100586 + L2 LINE L2 1814 2052 -1262 189 363 133 7 chr12 3686442 3686577 -140099878 - L2 LINE L2 0 3272 3121 204 321 0 25 chr12 3687296 3687377 -140099078 + L3b LINE CR1 1317 1395 -188 21 0 0 0 chr12 3687439 3687460 -140098995 + AT_rich Low_complexity Low_complexity 1 21 0 6693 224 88 63 chr12 3687657 3689319 -140097136 - L1ME2 LINE L1 0 6184 4564 816 176 0 14 chr12 3689319 3689461 -140096994 - AluJb SINE Alu -171 141 2 6693 224 88 63 chr12 3689461 3691267 -140095188 - L1ME2 LINE L1 -1620 4564 2466 555 272 15 0 chr12 3691279 3691415 -140095040 + MLT2F LTR ERVL 4 141 -522 227 260 0 0 chr12 3691593 3691643 -140094812 + L2 LINE L2 3202 3251 -21 629 248 63 71 chr12 3691651 3691889 -140094566 + MIR SINE MIR 1 236 -26 3427 85 9 9 chr12 3692057 3692517 -140093938 + LTR46 LTR ERV1 1 460 0 312 277 92 8 chr12 3693717 3693836 -140092619 + L3b LINE CR1 1279 1407 -176 202 274 219 0 chr12 3694928 3695001 -140091454 + MIR SINE MIR 4 92 -170 440 261 17 9 chr12 3695075 3695190 -140091265 + MIR SINE MIR 129 244 -18 401 268 114 8 chr12 3695367 3695490 -140090965 + MIR SINE MIR 124 259 -3 362 299 132 20 chr12 3696537 3696709 -140089746 + MIR SINE MIR 18 205 -57 988 250 76 0 chr12 3696709 3696933 -140089522 + MIR SINE MIR 1 241 -21 875 267 71 8 chr12 3697551 3697791 -140088664 + MIR SINE MIR 6 260 -2 607 348 41 41 chr12 3698967 3699435 -140087020 - L2 LINE L2 -556 2758 2291 647 290 61 71 chr12 3699454 3700158 -140086297 + L1ME4a LINE L1 5174 5873 -248 487 276 142 39 chr12 3701912 3702144 -140084311 - MIR SINE MIR -1 261 6 248 284 0 84 chr12 3702375 3702470 -140083985 - MIR SINE MIR -70 138 52 1277 97 121 5 chr12 3703403 3703609 -140082846 + MER30 DNA MER1_type 1 230 0 665 174 193 19 chr12 3704052 3704213 -140082242 + MER5A DNA MER1_type 1 189 0 261 202 53 53 chr12 3704270 3704316 -140082139 + MER103 DNA DNA 2 47 -119 2245 65 0 7 chr12 3704316 3704607 -140081848 - AluSx SINE Alu 0 312 24 261 202 53 53 chr12 3704607 3704654 -140081801 + MER103 DNA DNA 46 95 -71 204 118 39 20 chr12 3704662 3704713 -140081742 + (TTATA)n Simple_repeat Simple_repeat 5 56 0 242 296 62 0 chr12 3704885 3704966 -140081489 + MER5A DNA MER1_type 73 158 -31 4826 259 69 30 chr12 3707575 3709393 -140077062 + L1MEc LINE L1 100 1989 -4407 1501 201 4 26 chr12 3709393 3709666 -140076789 + Tigger7 DNA MER2_type 1 267 -466 503 219 10 0 chr12 3709664 3709760 -140076695 + Tigger7 DNA MER2_type 2390 2486 -1 * 4018 194 67 25 chr12 3709761 3711108 -140075347 + L1MB3 LINE L1 1993 6251 -1 1932 139 3 0 chr12 3711722 3712017 -140074438 - AluSx SINE Alu -16 296 1 180 0 0 0 chr12 3712295 3712315 -140074140 + (T)n Simple_repeat Simple_repeat 1 20 0 213 227 27 40 chr12 3712668 3712743 -140073712 + T-rich Low_complexity Low_complexity 5 78 0 421 291 60 86 chr12 3712849 3713467 -140072988 - HERVI LTR ERV1 -763 5886 5285 250 326 132 19 chr12 3713562 3713887 -140072568 - HERVI LTR ERV1 -1501 6284 5923 233 29 29 0 chr12 3714145 3714179 -140072276 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1650 324 25 45 chr12 3714185 3714286 -140072169 - HERVI LTR ERV1 -2026 5759 5658 2060 83 49 0 chr12 3714286 3714574 -140071881 - AluSg1 SINE Alu -7 302 1 1650 324 25 45 chr12 3714574 3715363 -140071092 - HERVI LTR ERV1 -2127 5658 4855 2295 92 0 0 chr12 3715363 3715666 -140070789 - AluSq SINE Alu -10 303 1 1650 324 25 45 chr12 3715666 3716426 -140070029 - HERVI LTR ERV1 -2930 4855 3104 566 250 133 27 chr12 3716973 3717229 -140069226 + MER102a DNA MER1_type 45 327 -3 258 344 6 25 chr12 3717594 3717751 -140068704 + CT-rich Low_complexity Low_complexity 2 155 0 458 101 0 25 chr12 3717768 3717847 -140068608 - LTR18B LTR ERVL -270 344 268 462 159 0 0 chr12 3717900 3717969 -140068486 - LTR18B LTR ERVL -212 402 334 703 318 65 58 chr12 3717970 3718735 -140067720 - HERVI LTR ERV1 -5751 2034 1264 551 363 3 7 chr12 3718914 3719203 -140067252 - HERVI LTR ERV1 -6779 1006 719 256 202 144 29 chr12 3719384 3719488 -140066967 - HERVI LTR ERV1 -6347 302 187 191 88 29 0 chr12 3719913 3719947 -140066508 + (TTG)n Simple_repeat Simple_repeat 2 36 0 751 305 56 13 chr12 3720294 3720599 -140065856 + L2 LINE L2 2996 3313 0 282 116 0 0 chr12 3720599 3720642 -140065813 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 190 285 130 41 chr12 3721298 3721314 -140065141 + MER5A DNA MER1_type 5 31 -158 683 132 88 137 chr12 3721314 3721432 -140065023 - MER5A DNA MER1_type -2 187 80 1198 35 0 0 chr12 3721432 3721575 -140064880 - L1PA4 LINE L1 -3 6152 6010 683 132 88 137 chr12 3721575 3721638 -140064817 - MER5A DNA MER1_type -109 80 15 577 272 31 0 chr12 3721826 3721988 -140064467 + MIR SINE MIR 84 250 -12 213 298 0 0 chr12 3723942 3723999 -140062456 - MIR SINE MIR -118 90 34 180 111 0 0 chr12 3724152 3724179 -140062276 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 372 324 205 42 chr12 3724288 3724884 -140061571 - L2 LINE L2 -741 2573 1881 1372 139 0 17 chr12 3726402 3726639 -140059816 - L1MA5A LINE L1 -4 6293 6061 466 329 140 40 chr12 3727360 3728304 -140058151 - L2 LINE L2 -5 3267 2156 1264 125 0 0 chr12 3729019 3729211 -140057244 + AluSg/x SINE Alu 121 312 0 2471 56 0 0 chr12 3729537 3729843 -140056612 + AluY SINE Alu 1 306 -5 565 262 94 53 chr12 3730651 3730895 -140055560 - MIR SINE MIR 0 262 9 493 384 20 0 chr12 3731250 3731448 -140055007 + MIR SINE MIR 58 259 -3 480 157 22 11 chr12 3731636 3731725 -140054730 + MLT1C LTR MaLR 3 92 -375 44128 29 21 1 chr12 3731729 3737762 -140048693 + L1HS LINE L1 1 6155 0 28 0 0 0 chr12 3737770 3737798 -140048657 + AT_rich Low_complexity Low_complexity 1 28 0 1826 192 45 11 chr12 3737798 3738173 -140048282 + MLT1C LTR MaLR 80 467 0 443 324 7 14 chr12 3738647 3738789 -140047666 + MIR SINE MIR 8 148 -114 194 302 38 0 chr12 3739076 3739129 -140047326 + MIR3 SINE MIR 151 205 -3 335 325 165 34 chr12 3739451 3739688 -140046767 + L3b LINE CR1 1290 1557 -26 21 0 0 0 chr12 3740024 3740045 -140046410 + AT_rich Low_complexity Low_complexity 1 21 0 510 230 241 16 chr12 3740220 3740411 -140046044 - MIR SINE MIR 0 262 29 234 0 0 0 chr12 3740717 3740743 -140045712 + (A)n Simple_repeat Simple_repeat 1 26 0 410 298 0 15 chr12 3741421 3741552 -140044903 - L2 LINE L2 -212 3060 2932 305 288 144 0 chr12 3742011 3742164 -140044291 - MIR SINE MIR -6 256 82 413 206 56 86 chr12 3742469 3742638 -140043817 + MIR SINE MIR 37 196 -63 218 333 81 18 chr12 3742687 3742798 -140043657 + L2 LINE L2 3147 3264 -8 513 0 0 0 chr12 3745068 3745125 -140041330 + (CA)n Simple_repeat Simple_repeat 2 58 0 21 0 0 0 chr12 3745643 3745664 -140040791 + GC_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 3745852 3745881 -140040574 + GC_rich Low_complexity Low_complexity 1 29 0 405 0 0 0 chr12 3746237 3746282 -140040173 + (TC)n Simple_repeat Simple_repeat 2 46 0 396 59 0 0 chr12 3747099 3747150 -140039305 + (TG)n Simple_repeat Simple_repeat 1 51 0 404 299 76 11 chr12 3747425 3747609 -140038846 - MIR3 SINE MIR -9 199 4 289 279 95 27 chr12 3747970 3748117 -140038338 + MLT1G1 LTR MaLR 439 595 0 184 214 0 48 chr12 3748135 3748177 -140038278 + L2 LINE L2 3259 3298 -15 187 330 0 23 chr12 3748267 3748355 -140038100 - L2 LINE L2 -1 3312 3227 218 254 55 0 chr12 3748603 3748658 -140037797 + MIR SINE MIR 195 252 -10 542 275 192 0 chr12 3748724 3748906 -140037549 - MIR SINE MIR -15 247 31 715 205 112 6 chr12 3748945 3749106 -140037349 - MER5B DNA MER1_type 0 178 1 264 368 97 26 chr12 3749309 3749464 -140036991 + L3 LINE CR1 1412 1577 0 24 0 0 0 chr12 3750657 3750681 -140035774 + AT_rich Low_complexity Low_complexity 1 24 0 371 299 50 86 chr12 3751111 3751449 -140035006 - L1MC4a LINE L1 -86 6035 5710 328 255 131 48 chr12 3752272 3752417 -140034038 + MIR SINE MIR 79 235 -27 486 268 22 29 chr12 3752491 3752629 -140033826 + MIR3 SINE MIR 5 141 -67 457 287 18 17 chr12 3753754 3753961 -140032494 - MIR SINE MIR -21 241 36 426 253 31 62 chr12 3753968 3754130 -140032325 + MIR SINE MIR 24 180 -82 310 250 43 11 chr12 3756292 3756384 -140030071 + MIR3 SINE MIR 6 100 -108 260 289 87 0 chr12 3756444 3756548 -140029907 + MIR3 SINE MIR 87 199 -9 653 82 10 0 chr12 3758619 3758716 -140027739 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 281 306 120 28 chr12 3759580 3759688 -140026767 + L2 LINE L2 3154 3271 -1 219 386 95 21 chr12 3760636 3760825 -140025630 - L3b LINE CR1 -92 1491 1289 432 326 81 52 chr12 3762056 3762498 -140023957 - L2 LINE L2 -1 3271 2817 411 294 79 1 chr12 3762587 3762734 -140023721 - MIR SINE MIR -61 147 35 651 343 55 75 chr12 3762767 3763999 -140022456 - L2 LINE L2 -505 2809 1603 610 276 86 17 chr12 3764293 3764525 -140021930 - MIR SINE MIR -2 260 13 213 121 0 0 chr12 3764566 3764599 -140021856 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 1356 204 87 9 chr12 3767223 3767556 -140018899 - L1MB7 LINE L1 0 6184 5826 1931 244 84 16 chr12 3768376 3768949 -140017506 + MER90 LTR ERV1 3 614 0 2601 54 0 10 chr12 3769689 3770002 -140016453 - AluY SINE Alu -1 310 1 382 298 61 0 chr12 3770441 3770558 -140015897 - MIR SINE MIR -40 168 43 450 305 11 9 chr12 3770679 3770829 -140015626 - MIR3 SINE MIR -45 163 47 253 305 29 19 chr12 3771295 3771400 -140015055 + L2 LINE L2 2715 2820 -494 713 145 23 8 chr12 3771491 3771622 -140014833 - MER101 LTR ERV1 -4 470 338 33 25 0 0 chr12 3771622 3771662 -140014793 + AT_rich Low_complexity Low_complexity 1 40 0 380 152 42 0 chr12 3771662 3771827 -140014628 + (TA)n Simple_repeat Simple_repeat 1 172 0 2028 80 36 25 chr12 3771827 3772101 -140014354 - AluSp SINE Alu -22 291 15 993 157 141 0 chr12 3772109 3772294 -140014161 - MER101B LTR ERV1 -126 444 234 247 225 225 0 chr12 3772331 3772420 -140014035 + L2 LINE L2 3205 3313 0 809 183 26 26 chr12 3773198 3773351 -140013104 + FRAM SINE Alu 1 151 -25 209 252 233 48 chr12 3773392 3773495 -140012960 - MIR SINE MIR -139 123 2 365 107 165 29 chr12 3773728 3773820 -140012635 + MIR SINE MIR 58 154 -62 1383 177 90 3 chr12 3774315 3774615 -140011840 + LTR56 LTR ERV1 9 334 -111 734 94 9 0 chr12 3774617 3774723 -140011732 - L1PA13 LINE L1 -370 5791 5685 2311 113 21 0 chr12 3774723 3775056 -140011399 + L1PA13 LINE L1 5811 6153 -10 273 238 36 12 chr12 3775141 3775225 -140011230 + LTR23 LTR ERV1 352 437 0 545 238 67 47 chr12 3776172 3776365 -140010090 + MIR SINE MIR 8 204 -58 313 273 91 0 chr12 3776773 3776861 -140009594 + MIR3 SINE MIR 85 180 -28 2330 90 30 0 chr12 3778821 3779120 -140007335 + AluSc SINE Alu 1 308 -1 1888 157 10 7 chr12 3779349 3779649 -140006806 + AluJo SINE Alu 1 301 -11 234 0 0 0 chr12 3779867 3779893 -140006562 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 519 306 42 14 chr12 3780824 3781040 -140005415 - MIR SINE MIR -21 241 20 202 271 57 43 chr12 3781109 3781179 -140005276 + MIR SINE MIR 94 164 -98 412 127 0 0 chr12 3781691 3781754 -140004701 - LTR26 LTR ERV1 0 603 541 3028 169 37 2 chr12 3781760 3782321 -140004134 - LTR26 LTR ERV1 -22 581 1 285 29 0 0 chr12 3784607 3784641 -140001814 + (TG)n Simple_repeat Simple_repeat 2 35 0 1348 112 5 0 chr12 3784641 3784837 -140001618 - L1PA13 LINE L1 -16 6147 5951 756 238 28 6 chr12 3785564 3785745 -140000710 + MIR3 SINE MIR 23 207 -1 4674 189 75 6 chr12 3785861 3785902 -140000553 + Charlie1a DNA MER1_type 14 51 -2710 198 0 0 0 chr12 3785902 3785924 -140000531 + (G)n Simple_repeat Simple_repeat 1 22 0 4674 189 75 6 chr12 3785924 3786964 -139999491 + Charlie1a DNA MER1_type 51 1170 -285 6724 76 12 10 chr12 3786966 3788256 -139998199 + L1PA10 LINE L1 4890 6168 0 754 166 153 0 chr12 3788301 3788458 -139997997 + MER20 DNA MER1_type 33 213 -6 713 121 258 0 chr12 3788463 3788653 -139997802 + Charlie1a DNA MER1_type 1187 1425 -30 1881 143 0 40 chr12 3788655 3788955 -139997500 + AluJo SINE Alu 3 290 -22 460 226 34 85 chr12 3789380 3789557 -139996898 - L2 LINE L2 -220 3052 2885 278 111 44 0 chr12 3791463 3791508 -139994947 - MIR SINE MIR -33 229 183 1080 289 64 50 chr12 3793040 3793664 -139992791 - L2 LINE L2 -349 2965 2333 2154 102 0 0 chr12 3794001 3794286 -139992169 + AluSg SINE Alu 1 285 -25 508 306 81 61 chr12 3794604 3795172 -139991283 - L1 LINE L1 -2883 3263 2699 199 208 21 0 chr12 3795372 3795420 -139991035 - L2 LINE L2 -23 3249 3201 182 241 35 35 chr12 3795460 3795518 -139990937 - L2 LINE L2 -322 2991 2934 513 206 86 89 chr12 3795646 3795971 -139990484 - Charlie7 DNA MER1_type -97 2515 2192 1047 251 108 43 chr12 3796056 3796464 -139989991 - Charlie7 DNA MER1_type -2047 565 185 275 0 29 0 chr12 3796464 3796499 -139989956 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2024 86 0 14 chr12 3796499 3796779 -139989676 - AluSc SINE Alu -33 276 1 1047 251 108 43 chr12 3796779 3796852 -139989603 - Charlie7 DNA MER1_type -2426 186 52 271 294 101 25 chr12 3796887 3797006 -139989449 - MIR SINE MIR -64 144 17 393 282 84 35 chr12 3799050 3799252 -139987203 - MIR SINE MIR -17 245 34 261 0 0 0 chr12 3799306 3799335 -139987120 + (TA)n Simple_repeat Simple_repeat 2 30 0 1417 127 14 0 chr12 3799384 3799596 -139986859 + L1PA15 LINE L1 5948 6162 -3 336 340 19 31 chr12 3799611 3799773 -139986682 + L1MC4a LINE L1 5770 5929 -1879 182 37 37 0 chr12 3800462 3800489 -139985966 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 2251 93 3 0 chr12 3801138 3801448 -139985007 + AluY SINE Alu 1 311 0 2197 97 0 0 chr12 3801689 3801989 -139984466 + AluSx SINE Alu 1 300 -12 2062 98 28 0 chr12 3803054 3803340 -139983115 + AluSx SINE Alu 1 294 -18 811 212 26 36 chr12 3803396 3803589 -139982866 + MIR SINE MIR 58 248 -14 537 320 65 7 chr12 3803729 3804004 -139982451 + L1ME LINE L1 5370 5660 -504 186 118 0 0 chr12 3804159 3804193 -139982262 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 363 320 120 16 chr12 3805098 3805407 -139981048 + L2 LINE L2 1729 2069 -1245 416 340 97 43 chr12 3805454 3805939 -139980516 + L2 LINE L2 2365 2875 -439 353 277 142 64 chr12 3805922 3806189 -139980266 + L2 LINE L2 2985 3272 0 * 197 263 105 0 chr12 3806421 3806497 -139979958 - MIR SINE MIR -56 206 123 1993 192 66 27 chr12 3806542 3806984 -139979471 + LTR2B LTR ERV1 32 490 0 33162 113 40 51 chr12 3806984 3814114 -139972341 + Harlequin LTR ERV1 1 6896 0 1763 204 54 36 chr12 3814114 3814324 -139972131 + LTR2 LTR ERV1 1 206 -243 228 67 0 0 chr12 3814324 3814354 -139972101 + (TTCTG)n Simple_repeat Simple_repeat 1 30 0 1763 204 54 36 chr12 3814354 3814584 -139971871 + LTR2 LTR ERV1 206 449 0 297 114 0 0 chr12 3814792 3814836 -139971619 - MIR SINE MIR -64 144 101 418 163 0 81 chr12 3816593 3816679 -139969776 - MIR SINE MIR -111 151 73 553 139 19 0 chr12 3816893 3817001 -139969454 + CT-rich Low_complexity Low_complexity 1 110 0 308 292 45 0 chr12 3817726 3817815 -139968640 + MIR SINE MIR 38 130 -78 1048 251 22 4 chr12 3818851 3819078 -139967377 - MIR SINE MIR 0 262 32 181 345 41 48 chr12 3820418 3820563 -139965892 - L2 LINE L2 -3 3310 3167 470 214 101 44 chr12 3821076 3821235 -139965220 + MIR3 SINE MIR 18 185 -23 3727 158 51 3 chr12 3821334 3821943 -139964512 + MER21B LTR ERV1 1 638 -225 438 263 135 13 chr12 3821943 3822124 -139964331 + LTR1 LTR ERV1 48 248 -568 668 203 29 37 chr12 3822175 3822345 -139964110 + LTR1B LTR ERV1 332 1216 -62 494 145 99 138 chr12 3822556 3822708 -139963747 + MER21B LTR ERV1 693 912 -19 384 248 70 16 chr12 3822819 3822948 -139963507 - L1ME4a LINE L1 -17 6104 5969 1275 131 29 5 chr12 3822960 3823166 -139963289 + MER2 DNA MER2_type 1 211 -134 925 199 25 0 chr12 3823205 3823366 -139963089 + Tigger3(Golem) DNA MER2_type 1 165 -2864 * 1141 113 0 0 chr12 3823355 3823514 -139962941 + Tigger3(Golem) DNA MER2_type 2175 2333 -696 1704 124 4 0 chr12 3823514 3823755 -139962700 - THE1B LTR MaLR 0 364 123 374 82 0 33 chr12 3823746 3823807 -139962648 + AluSq/x SINE Alu 81 139 -164 * 1019 98 0 0 chr12 3824045 3824177 -139962278 + AluSg SINE Alu 1 132 -178 648 149 79 0 chr12 3824180 3824294 -139962161 - THE1B LTR MaLR -252 123 1 3963 118 62 6 chr12 3824297 3824957 -139961498 + Tigger3(Golem) DNA MER2_type 2332 3028 -1 331 221 29 0 chr12 3824957 3825021 -139961434 + MER2 DNA MER2_type 280 345 0 991 183 213 39 chr12 3825026 3825387 -139961068 - MSTC LTR MaLR -4 424 1 2298 92 0 0 chr12 3826151 3826457 -139959998 + AluSg SINE Alu 1 306 -4 7116 200 40 21 chr12 3826978 3828425 -139958030 + L1M2a LINE L1 646 2121 -5043 1460 217 0 10 chr12 3828425 3828729 -139957726 + AluJb SINE Alu 5 305 -7 390 174 41 0 chr12 3828737 3828835 -139957620 + GA-rich Low_complexity Low_complexity 4 105 0 2886 174 14 86 chr12 3828845 3829637 -139956818 + L1M2a LINE L1 2096 2830 -4338 2961 85 0 0 chr12 3829637 3830012 -139956443 + THE1C LTR MaLR 1 375 0 9761 114 49 38 chr12 3830014 3831573 -139954882 + THE1C-int LTR MaLR 4 1580 0 2743 97 14 3 chr12 3831573 3831944 -139954511 + THE1C LTR MaLR 1 375 0 880 271 48 11 chr12 3831950 3832323 -139954132 + L1M2a LINE L1 3294 3680 -3487 697 212 28 79 chr12 3832326 3832562 -139953893 + L1ME3A LINE L1 5911 6129 -33 21 36 0 0 chr12 3832691 3832719 -139953736 + AT_rich Low_complexity Low_complexity 1 28 0 259 247 93 10 chr12 3832872 3832969 -139953486 + L1MC4 LINE L1 7929 8033 -9 2182 98 10 0 chr12 3833059 3833356 -139953099 - AluSx SINE Alu -8 304 5 272 237 64 103 chr12 3833371 3833465 -139952990 - L1ME LINE L1 -394 5727 5640 14265 134 14 13 chr12 3833465 3835788 -139950667 - L1PA11 LINE L1 0 6174 3839 2251 95 10 10 chr12 3835788 3836093 -139950362 - AluSp SINE Alu -8 305 1 14265 134 14 13 chr12 3836093 3836940 -139949515 - L1PA11 LINE L1 -2335 3839 2994 272 237 64 103 chr12 3836940 3837001 -139949454 - L1ME LINE L1 -481 5640 5578 43883 32 23 1 chr12 3838724 3844743 -139941712 + L1PA3 LINE L1 1 6151 -4 25 0 0 0 chr12 3844743 3844768 -139941687 + AT_rich Low_complexity Low_complexity 1 25 0 279 339 70 39 chr12 3844768 3845108 -139941347 + L2 LINE L2 2766 3114 -158 369 305 141 8 chr12 3845152 3845280 -139941175 - L2 LINE L2 -2 3270 3126 763 274 140 17 chr12 3845294 3845832 -139940623 + L2 LINE L2 2704 3313 0 394 264 33 33 chr12 3846038 3846159 -139940296 - L2 LINE L2 -4 3268 3148 723 257 45 10 chr12 3846256 3846458 -139939997 + MIR SINE MIR 12 220 -42 293 294 56 24 chr12 3847340 3847466 -139938989 + L2 LINE L2 3142 3271 -1 186 43 0 0 chr12 3847475 3847498 -139938957 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 450 246 59 0 chr12 3847636 3847754 -139938701 + MIR3 SINE MIR 53 177 -31 820 208 42 21 chr12 3848204 3848396 -139938059 + MIR SINE MIR 3 198 -64 1845 237 55 101 chr12 3848403 3849276 -139937179 + L1MC4 LINE L1 7210 8042 0 198 222 0 0 chr12 3849302 3849338 -139937117 + L2 LINE L2 3263 3298 -15 180 343 14 14 chr12 3849430 3849500 -139936955 + MIR SINE MIR 77 146 -116 244 384 34 34 chr12 3849804 3849950 -139936505 - L2 LINE L2 -8 3264 3119 2244 98 10 0 chr12 3849950 3850256 -139936199 + AluSg SINE Alu 1 309 -1 191 216 0 0 chr12 3850323 3850360 -139936095 + L2 LINE L2 3277 3313 0 255 103 0 0 chr12 3851007 3851046 -139935409 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 625 261 24 6 chr12 3851669 3851834 -139934621 + MIR SINE MIR 87 254 -8 524 246 25 0 chr12 3852032 3852158 -139934297 + MER20B DNA MER1_type 69 202 -17 414 188 145 0 chr12 3852206 3852323 -139934132 + MLT1L LTR MaLR 168 301 -314 437 295 39 19 chr12 3852396 3852552 -139933903 + MLT1L LTR MaLR 446 604 -11 5419 197 31 24 chr12 3852592 3853182 -139933273 + L1MD1 LINE L1 3872 4457 -1785 1884 147 68 34 chr12 3853182 3853535 -139932920 - MLT1A1 LTR MaLR 0 365 1 5419 197 31 24 chr12 3853535 3855311 -139931144 + L1MD1 LINE L1 4457 6240 -2 253 260 64 101 chr12 3856335 3856554 -139929901 + MLT1J LTR MaLR 99 309 -202 258 365 83 6 chr12 3857079 3857235 -139929220 - MIR SINE MIR -62 200 33 899 279 60 53 chr12 3857643 3858323 -139928132 - L2 LINE L2 0 3313 2630 320 277 50 10 chr12 3858397 3858498 -139927957 - MER91C DNA MER1_type 0 140 36 195 42 0 0 chr12 3858895 3858919 -139927536 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 709 70 0 0 chr12 3858921 3859007 -139927448 - L1PA10 LINE L1 -23 6145 6060 579 212 153 51 chr12 3859009 3859264 -139927191 - L2 LINE L2 -3 3310 3030 2307 94 31 22 chr12 3859984 3860303 -139926152 - THE1B LTR MaLR -42 322 1 299 304 123 0 chr12 3860399 3860537 -139925918 + MIR3 SINE MIR 47 201 -7 432 376 73 6 chr12 3861101 3861266 -139925189 - MER91A DNA MER1_type -5 191 16 334 352 39 66 chr12 3861822 3862078 -139924377 - L2 LINE L2 -189 3083 2835 306 0 0 0 chr12 3862142 3862176 -139924279 + (CCA)n Simple_repeat Simple_repeat 1 34 0 763 209 20 0 chr12 3862348 3862496 -139923959 - MER45A DNA AcHobo 0 178 28 1252 150 75 66 chr12 3863745 3864065 -139922390 - MER33 DNA MER1_type 0 324 2 742 299 66 71 chr12 3864167 3864619 -139921836 - L1MEc LINE L1 -3886 2510 2061 196 169 17 34 chr12 3864917 3864976 -139921479 + (TATG)n Simple_repeat Simple_repeat 4 61 0 317 291 91 43 chr12 3865014 3865268 -139921187 + L1ME4a LINE L1 5631 5896 -225 339 291 26 51 chr12 3865301 3865418 -139921037 + HAL1b LINE L1 1222 1335 -13 282 73 0 0 chr12 3866292 3866333 -139920122 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 411 167 0 0 chr12 3866345 3866417 -139920038 - FLAM SINE Alu -19 124 53 298 167 56 0 chr12 3866417 3866471 -139919984 + AluJ/FLAM SINE Alu 6 62 -240 315 0 0 0 chr12 3866887 3866922 -139919533 + (TG)n Simple_repeat Simple_repeat 1 35 0 201 237 0 0 chr12 3867357 3867395 -139919060 - MIR SINE MIR -58 150 113 550 248 0 16 chr12 3867831 3867956 -139918499 + MER3 DNA MER1_type 40 162 -47 1137 204 24 67 chr12 3867959 3868332 -139918123 + MER3 DNA MER1_type 2234 2590 0 277 191 15 73 chr12 3868856 3868924 -139917531 - LTR16A LTR ERVL -5 445 382 377 275 18 0 chr12 3869109 3869218 -139917237 - LTR16A LTR ERVL -101 349 239 22 56 0 0 chr12 3870927 3870963 -139915492 + GC_rich Low_complexity Low_complexity 1 36 0 236 301 82 56 chr12 3871897 3872093 -139914362 + MIR SINE MIR 12 212 -50 195 42 0 0 chr12 3872606 3872630 -139913825 + (GGGGA)n Simple_repeat Simple_repeat 3 26 0 1151 131 0 0 chr12 3872733 3872901 -139913554 - AluSq SINE Alu -145 168 1 265 280 60 20 chr12 3872975 3873075 -139913380 + MIR SINE MIR 43 146 -62 586 287 164 15 chr12 3873090 3873358 -139913097 + L2 LINE L2 3005 3312 -1 2375 58 7 10 chr12 3874282 3874591 -139911864 - AluY SINE Alu -3 308 1 404 311 26 1 chr12 3875102 3875257 -139911198 + MIR SINE MIR 3 169 -39 820 164 0 0 chr12 3876019 3876147 -139910308 + FLAM_C SINE Alu 1 128 -5 949 152 35 23 chr12 3876443 3876614 -139909841 - AluJb SINE Alu -9 303 131 2672 211 45 12 chr12 3876631 3877208 -139909247 - MER45B DNA AcHobo -444 596 1 720 173 36 36 chr12 3878194 3878362 -139908093 + MER58C DNA MER1_type 47 214 -1 409 295 29 0 chr12 3878430 3878535 -139907920 - MER5B DNA MER1_type -63 115 8 762 146 129 23 chr12 3878547 3878718 -139907737 + MER5A DNA MER1_type 1 189 0 201 146 122 0 chr12 3878869 3878910 -139907545 - MIR SINE MIR -67 141 96 822 262 59 5 chr12 3879301 3879522 -139906933 - MIR SINE MIR 0 262 30 270 259 133 49 chr12 3880052 3880195 -139906260 + MIR3 SINE MIR 24 178 -30 189 171 24 146 chr12 3880760 3880842 -139905613 + MIR3 SINE MIR 5 76 -132 182 286 65 26 chr12 3881542 3881619 -139904836 - MIR SINE MIR -115 147 68 327 113 0 0 chr12 3882420 3882473 -139903982 + L1MB4 LINE L1 6127 6179 -1 204 312 39 39 chr12 3882526 3882603 -139903852 + MIR3 SINE MIR 130 206 -2 377 212 80 80 chr12 3882908 3883059 -139903396 - MIR3 SINE MIR -55 153 3 210 352 33 22 chr12 3883574 3883665 -139902790 - L3b LINE CR1 -87 1496 1405 209 364 10 10 chr12 3883871 3883970 -139902485 - MER5A DNA MER1_type -6 183 85 224 302 105 0 chr12 3884044 3884130 -139902325 + MIR3 SINE MIR 3 97 -111 * 242 297 44 0 chr12 3884123 3884214 -139902241 + MIR SINE MIR 113 207 -55 518 271 0 0 chr12 3884226 3884359 -139902096 - MER94 DNA DNA -1 133 1 214 284 167 59 chr12 3884846 3885050 -139901405 - L2 LINE L2 0 3272 3047 38 98 0 0 chr12 3886091 3886213 -139900242 + AT_rich Low_complexity Low_complexity 1 122 0 311 216 22 97 chr12 3886275 3886409 -139900046 + L1MCa LINE L1 1995 2118 -4308 1222 160 0 0 chr12 3886784 3886972 -139899483 - MER5A DNA MER1_type 0 189 2 1494 115 0 37 chr12 3887919 3888162 -139898293 + AluJo SINE Alu 79 312 0 432 283 58 74 chr12 3888463 3888639 -139897816 + L1MC4a LINE L1 5764 5934 -1874 562 213 24 0 chr12 3888639 3888766 -139897689 + L1MD2 LINE L1 6215 6344 -15 432 283 58 74 chr12 3888766 3888900 -139897555 + L1MC4a LINE L1 5934 6069 -1739 1535 156 126 58 chr12 3889105 3889470 -139896985 + MLT1B LTR MaLR 1 390 0 418 227 273 0 chr12 3890834 3890962 -139895493 + MER5A DNA MER1_type 6 168 -21 186 398 17 0 chr12 3891293 3891411 -139895044 + L3b LINE CR1 1279 1398 -185 532 312 169 61 chr12 3891924 3892315 -139894140 - L3 LINE CR1 -18 1559 1127 318 50 0 0 chr12 3893141 3893181 -139893274 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 353 29 36 chr12 3894481 3894620 -139891835 + L3 LINE CR1 1365 1502 -75 1663 164 24 24 chr12 3894986 3895278 -139891177 + AluJo SINE Alu 1 292 -20 604 128 0 0 chr12 3895308 3895386 -139891069 + AluJb SINE Alu 213 290 -22 237 235 12 37 chr12 3895469 3895550 -139890905 + L1ME4a LINE L1 5938 6016 -105 203 336 55 36 chr12 3895623 3895720 -139890735 + L3b LINE CR1 1239 1340 -243 1421 114 59 9 chr12 3895720 3895939 -139890516 + MER30 DNA MER1_type 1 230 0 203 336 55 36 chr12 3895939 3895951 -139890504 + L3b LINE CR1 1340 1350 -233 345 312 19 18 chr12 3896850 3896985 -139889470 - MIR SINE MIR -63 145 10 343 284 74 0 chr12 3897151 3897246 -139889209 + MIR SINE MIR 34 135 -127 2024 120 42 0 chr12 3897488 3897772 -139888683 - AluSx SINE Alu -16 296 1 279 262 81 114 chr12 3897817 3897966 -139888489 - MIR SINE MIR -71 191 48 822 226 86 53 chr12 3898700 3898943 -139887512 + MIR SINE MIR 12 262 0 202 352 0 14 chr12 3898947 3899018 -139887437 + MIR SINE MIR 52 121 -87 249 293 114 8 chr12 3899037 3899160 -139887295 - MER5A DNA MER1_type 0 189 54 * 416 273 16 16 chr12 3899057 3899178 -139887277 + MER5A DNA MER1_type 43 163 -26 266 269 0 30 chr12 3899298 3899365 -139887090 + L2 LINE L2 3200 3264 -8 1216 257 65 24 chr12 3899782 3900618 -139885837 + L1MCc LINE L1 1138 2013 -4889 207 0 0 0 chr12 3901244 3901267 -139885188 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 368 173 25 0 chr12 3901409 3901490 -139884965 + GA-rich Low_complexity Low_complexity 2 84 0 543 259 129 24 chr12 3902388 3902558 -139883897 - MIR SINE MIR -28 234 47 379 263 11 0 chr12 3905000 3905095 -139881360 - MIR SINE MIR -17 245 150 318 180 16 0 chr12 3905095 3905156 -139881299 - MER8 DNA MER2_type 0 239 178 2048 156 83 22 chr12 3905163 3905420 -139881035 + Tigger2 DNA MER2_type 2284 2577 -141 2464 71 7 0 chr12 3905420 3905717 -139880738 - AluSq SINE Alu -14 299 1 2048 156 83 22 chr12 3905717 3905869 -139880586 + Tigger2 DNA MER2_type 2577 2718 0 234 195 0 0 chr12 3905878 3905919 -139880536 - MIR SINE MIR -123 139 99 528 322 79 9 chr12 3906125 3906352 -139880103 + MIR SINE MIR 19 261 -1 223 109 55 18 chr12 3907788 3907843 -139878612 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 238 269 75 0 chr12 3908075 3908142 -139878313 - MER91A DNA MER1_type -111 85 14 255 244 11 67 chr12 3908299 3908389 -139878066 - L2 LINE L2 -14 3258 3174 195 333 61 0 chr12 3909670 3909769 -139876686 - MIR SINE MIR -56 206 102 730 215 11 45 chr12 3910758 3910935 -139875520 + MER63A DNA MER1_type 40 210 0 455 291 58 54 chr12 3910958 3911181 -139875274 + L2 LINE L2 3090 3313 0 271 381 19 19 chr12 3911199 3911354 -139875101 + L3 LINE CR1 265 419 -1158 547 189 47 0 chr12 3911411 3911517 -139874938 + MER63 DNA MER1_type 1 737 -325 487 279 87 6 chr12 3911600 3911772 -139874683 - MIR SINE MIR -54 208 23 241 277 161 65 chr12 3911778 3911933 -139874522 + L3 LINE CR1 421 590 -987 279 300 69 64 chr12 3912030 3912263 -139874192 + L3 LINE CR1 782 1015 -562 330 357 60 0 chr12 3912545 3912727 -139873728 - MIR SINE MIR -5 257 65 2144 255 98 11 chr12 3913842 3914431 -139872024 + L1MC4 LINE L1 6448 6984 -1058 228 35 0 0 chr12 3914431 3914460 -139871995 + (GCTG)n Simple_repeat Simple_repeat 4 32 0 * 621 91 0 27 chr12 3914459 3914569 -139871886 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 2144 255 98 11 chr12 3914460 3915180 -139871275 + L1MC4 LINE L1 6984 7899 -143 186 189 0 0 chr12 3915246 3915283 -139871172 + GA-rich Low_complexity Low_complexity 1 37 0 221 202 34 0 chr12 3915766 3915837 -139870618 + MIR SINE MIR 99 170 -62 1543 272 102 105 chr12 3916103 3918425 -139868030 + L2 LINE L2 967 3273 -40 228 67 0 0 chr12 3919453 3919483 -139866972 + (GGA)n Simple_repeat Simple_repeat 1 30 0 310 321 9 9 chr12 3919920 3920026 -139866429 - MIR SINE MIR -66 142 37 201 174 101 43 chr12 3921012 3921081 -139865374 + MIR SINE MIR 13 85 -177 302 274 5 59 chr12 3921184 3921262 -139865193 + CT-rich Low_complexity Low_complexity 1 82 -94 1971 101 4 0 chr12 3921262 3921519 -139864936 - AluSx SINE Alu -10 302 45 302 274 5 59 chr12 3921519 3921626 -139864829 + CT-rich Low_complexity Low_complexity 82 176 0 269 267 23 0 chr12 3921582 3921668 -139864787 + (TCTCTG)n Simple_repeat Simple_repeat 3 90 0 * 189 147 0 0 chr12 3921684 3921718 -139864737 + (TC)n Simple_repeat Simple_repeat 1 34 0 880 228 28 26 chr12 3922897 3923124 -139863331 - MIR SINE MIR -20 242 18 2513 67 0 22 chr12 3923787 3924100 -139862355 + AluY SINE Alu 1 306 -5 360 0 0 0 chr12 3924151 3924191 -139862264 + (TG)n Simple_repeat Simple_repeat 2 41 0 514 271 183 12 chr12 3924286 3924537 -139861918 - MLT1L LTR MaLR -12 603 310 258 269 0 13 chr12 3924696 3924774 -139861681 - MLT1L LTR MaLR -538 77 1 2087 177 44 2 chr12 3926008 3926420 -139860035 - MLT1C LTR MaLR 0 467 39 1119 232 103 31 chr12 3927108 3927565 -139858890 - L1MC4a LINE L1 -1631 6177 5688 426 275 84 54 chr12 3927618 3927916 -139858539 + Charlie8 DNA MER1_type 140 446 -1971 319 365 39 11 chr12 3928157 3928335 -139858120 - MIR SINE MIR -78 184 2 2136 132 0 3 chr12 3928346 3928641 -139857814 - AluSc SINE Alu -15 294 1 268 260 13 26 chr12 3928887 3928964 -139857491 - L2 LINE L2 -2 3270 3195 183 140 80 40 chr12 3930103 3930153 -139856302 + MIR3 SINE MIR 109 160 -48 835 173 13 0 chr12 3930162 3930312 -139856143 - L1PA16 LINE L1 0 6166 6015 2464 81 3 0 chr12 3930890 3931188 -139855267 - AluSc SINE Alu -10 299 1 252 143 0 0 chr12 3931190 3931232 -139855223 + (T)n Simple_repeat Simple_repeat 1 42 0 498 180 10 0 chr12 3931636 3931736 -139854719 + MER20B DNA MER1_type 515 615 -168 576 108 12 0 chr12 3931736 3931819 -139854636 + U6 snRNA snRNA 1 84 -23 423 181 116 55 chr12 3931857 3932056 -139854399 + MER20B DNA MER1_type 573 783 0 355 246 66 72 chr12 3932254 3932421 -139854034 - MER5B DNA MER1_type -12 166 1 1129 216 144 29 chr12 3932443 3932870 -139853585 + MLT1D LTR MaLR 27 389 -1 304 333 29 9 chr12 3934859 3934964 -139851491 - L2 LINE L2 -32 3240 3134 555 299 45 0 chr12 3935060 3935217 -139851238 - MIR3 SINE MIR -32 176 13 316 240 240 24 chr12 3935646 3935771 -139850684 + MIR SINE MIR 81 232 -30 392 320 93 0 chr12 3935866 3936016 -139850439 - L2 LINE L2 -7 3265 3102 450 211 35 0 chr12 3936237 3936351 -139850104 - L1ME4a LINE L1 -48 6073 5956 869 171 94 29 chr12 3936461 3936631 -139849824 - AluJo SINE Alu -13 299 119 278 104 0 21 chr12 3936631 3936679 -139849776 + (TTTC)n Simple_repeat Simple_repeat 3 49 0 987 120 0 0 chr12 3936679 3936812 -139849643 - AluJo SINE Alu -169 133 1 207 300 17 0 chr12 3936826 3936886 -139849569 + L2 LINE L2 3207 3267 -5 551 70 0 23 chr12 3937571 3937657 -139848798 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 * 988 91 28 11 chr12 3937650 3937681 -139848774 + (TTTC)n Simple_repeat Simple_repeat 1 210 0 988 91 28 11 chr12 3937681 3937857 -139848598 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2278 125 0 3 chr12 3937915 3938228 -139848227 - AluSq SINE Alu -1 312 1 212 244 0 0 chr12 3938715 3938760 -139847695 - MIR SINE MIR -77 131 87 397 200 67 0 chr12 3939212 3939287 -139847168 - L2 LINE L2 -43 3270 3191 1287 185 68 16 chr12 3939289 3939597 -139846858 - MER33 DNA MER1_type 0 324 1 812 248 45 33 chr12 3939860 3940102 -139846353 - MIR SINE MIR 0 262 18 213 306 14 14 chr12 3940937 3941009 -139845446 + L2 LINE L2 2990 3061 -211 8388 117 20 21 chr12 3941091 3942393 -139844062 + HSMAR2 DNA Mariner 1 1300 -2 225 273 114 0 chr12 3942888 3942976 -139843479 + L2 LINE L2 3175 3272 0 231 197 145 34 chr12 3943352 3943469 -139842986 - L1ME4a LINE L1 -1 6120 5991 472 264 121 22 chr12 3943699 3943881 -139842574 + L2 LINE L2 3114 3313 0 2497 143 14 32 chr12 3945364 3945796 -139840659 + MSTA LTR MaLR 5 428 0 3287 165 34 0 chr12 3946257 3946814 -139839641 + MLT1A1-int LTR MaLR 1 576 -1159 1621 156 22 0 chr12 3946811 3947086 -139839369 + MLT1A1-int LTR MaLR 1448 1728 -7 * 1314 190 88 51 chr12 3947093 3947242 -139839213 + MLT1A1 LTR MaLR 1 143 -222 2295 97 0 0 chr12 3947242 3947551 -139838904 - AluSc SINE Alu 0 309 1 1314 190 88 51 chr12 3947551 3947753 -139838702 + MLT1A1 LTR MaLR 143 365 0 259 289 0 67 chr12 3948026 3948116 -139838339 + L1ME LINE L1 5562 5645 -476 327 264 71 36 chr12 3948119 3948259 -139838196 - MIR SINE MIR 0 262 118 2238 92 3 0 chr12 3948276 3948568 -139837887 - AluSx SINE Alu -19 293 1 702 273 55 45 chr12 3949265 3949339 -139837116 - LTR16A1 LTR ERVL 0 457 385 2300 39 0 3 chr12 3949339 3949648 -139836807 + AluY SINE Alu 1 308 0 702 273 55 45 chr12 3949648 3949880 -139836575 - LTR16A1 LTR ERVL -72 385 147 188 200 0 0 chr12 3950122 3950152 -139836303 + MIR SINE MIR 121 150 -112 385 261 33 26 chr12 3950687 3950840 -139835615 + L3b LINE CR1 1213 1366 -217 205 258 30 0 chr12 3951037 3951103 -139835352 + T-rich Low_complexity Low_complexity 1 68 0 1936 133 0 10 chr12 3951160 3951453 -139835002 + AluSx SINE Alu 1 290 -22 456 220 229 0 chr12 3951491 3951600 -139834855 - MIR SINE MIR -117 145 12 456 259 0 27 chr12 3952105 3952217 -139834238 - MER63 DNA MER1_type -85 751 17 501 229 66 0 chr12 3952234 3952356 -139834099 - MER21B LTR ERV1 -124 739 610 280 358 131 11 chr12 3952564 3952846 -139833609 + L3b LINE CR1 1218 1533 -50 7900 251 43 16 chr12 3953622 3954679 -139831776 - L1ME1 LINE L1 -106 6129 5102 2129 69 42 3 chr12 3954679 3954967 -139831488 + AluY SINE Alu 1 299 -12 7900 251 43 16 chr12 3954967 3957614 -139828841 - L1ME1 LINE L1 -1133 5102 2282 461 318 15 0 chr12 3957612 3957744 -139828711 - L1ME1 LINE L1 -6094 302 169 * 354 271 194 23 chr12 3957744 3957873 -139828582 + MER96 DNA MER1_type? 1 151 -24 473 274 86 0 chr12 3957874 3957991 -139828464 + MER96 DNA MER1_type? 49 175 0 594 215 14 28 chr12 3957991 3958135 -139828320 - L1ME1 LINE L1 -6220 176 35 225 340 104 0 chr12 3958237 3958343 -139828112 - L2 LINE L2 -1 3271 3155 230 211 53 53 chr12 3958491 3958548 -139827907 - MIR SINE MIR -84 124 68 204 227 68 91 chr12 3958656 3958744 -139827711 + L2 LINE L2 3169 3254 -18 237 65 0 0 chr12 3958746 3958777 -139827678 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 450 259 112 18 chr12 3958908 3959078 -139827377 + MIR SINE MIR 77 262 0 590 237 79 7 chr12 3959973 3960125 -139826330 - MIR3 SINE MIR -3 205 43 659 263 67 10 chr12 3960498 3960692 -139825763 + MIR SINE MIR 46 250 -12 252 271 101 62 chr12 3961427 3961556 -139824899 + MIR SINE MIR 24 157 -105 1717 188 18 3 chr12 3961814 3962150 -139824305 - MER58B DNA MER1_type 0 341 1 2677 138 30 0 chr12 3963827 3964232 -139822223 + L1PA13 LINE L1 1 417 -6370 1956 177 12 0 chr12 3964230 3964575 -139821880 + L1PA13 LINE L1 2276 2624 -4173 * 21204 163 27 9 chr12 3964577 3965527 -139820928 + L1PA13 LINE L1 423 1354 -5460 207 69 0 0 chr12 3965527 3965556 -139820899 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 21204 163 27 9 chr12 3965556 3970872 -139815583 + L1PA13 LINE L1 1354 6814 0 982 244 47 0 chr12 3971645 3971858 -139814597 + MER58A DNA MER1_type 2 224 0 347 311 89 6 chr12 3971904 3972084 -139814371 + MIR SINE MIR 47 241 -21 3579 150 18 8 chr12 3972149 3972777 -139813678 - L1MB3 LINE L1 -4 6179 5546 234 184 0 0 chr12 3972899 3972937 -139813518 + MER20 DNA MER1_type 16 53 -166 2431 136 191 28 chr12 3972960 3973488 -139812967 - LTR18B LTR ERVL 0 614 1 730 188 5 130 chr12 3973488 3973680 -139812775 + MER20 DNA MER1_type 48 215 -4 311 322 133 28 chr12 3974258 3974544 -139811911 - L2 LINE L2 0 3313 2998 1937 118 23 16 chr12 3974978 3975282 -139811173 + AluSg SINE Alu 1 306 -4 235 372 49 26 chr12 3975476 3975702 -139810753 + L3b LINE CR1 1219 1449 -134 248 256 78 22 chr12 3977148 3977238 -139809217 - MIR SINE MIR -16 246 152 634 212 75 126 chr12 3977281 3977536 -139808919 + MIR SINE MIR 17 258 -4 398 225 217 8 chr12 3980651 3980771 -139805684 + L3b LINE CR1 1211 1355 -228 1838 213 5 11 chr12 3981284 3981651 -139804804 - MLT1A1 LTR MaLR 0 365 1 246 62 0 0 chr12 3981932 3981964 -139804491 + (TGGA)n Simple_repeat Simple_repeat 4 35 0 333 220 3 19 chr12 3982344 3982447 -139804008 - LTR16C LTR ERVL -52 438 301 884 169 0 7 chr12 3982568 3982710 -139803745 - MLT1A1 LTR MaLR -224 141 1 650 324 70 4 chr12 3984108 3984352 -139802103 + MIR SINE MIR 2 261 -1 557 312 0 87 chr12 3984805 3985023 -139801432 - MIR SINE MIR -29 233 35 933 219 64 27 chr12 3986080 3986299 -139800156 + MIR SINE MIR 36 262 0 397 196 54 0 chr12 3986429 3986522 -139799933 + MER5A DNA MER1_type 4 102 -87 403 280 15 45 chr12 3986574 3986706 -139799749 + MIR3 SINE MIR 31 158 -50 504 269 33 33 chr12 3987257 3987439 -139799016 + MIR3 SINE MIR 4 185 -23 201 278 28 14 chr12 3988841 3988913 -139797542 - MER5B DNA MER1_type -58 120 48 405 321 33 22 chr12 3989569 3989753 -139796702 - MER5A DNA MER1_type -3 186 1 265 252 222 30 chr12 3990803 3990938 -139795517 + MIR3 SINE MIR 38 198 -10 199 333 88 39 chr12 3991174 3991276 -139795179 + L3b LINE CR1 1477 1583 0 291 114 0 0 chr12 3991692 3991736 -139794719 + (CA)n Simple_repeat Simple_repeat 1 44 0 195 259 24 82 chr12 3992443 3992528 -139793927 + MER5A DNA MER1_type 1 80 -109 * 612 299 70 14 chr12 3992495 3992709 -139793746 - MIR SINE MIR -5 257 32 2151 136 0 0 chr12 3993044 3993339 -139793116 - AluSx SINE Alu -17 295 1 195 286 238 32 chr12 3993374 3993500 -139792955 + L3 LINE CR1 535 686 -891 374 337 132 36 chr12 3993503 3993889 -139792566 + L1 LINE L1 2403 2825 -3321 1435 307 134 46 chr12 3993973 3994795 -139791660 + L3 LINE CR1 680 1573 -4 200 242 210 64 chr12 3995527 3995717 -139790738 - MIR SINE MIR 0 262 42 531 0 0 0 chr12 3997175 3997234 -139789221 + (TG)n Simple_repeat Simple_repeat 2 60 0 737 216 22 74 chr12 3998581 3998812 -139787643 + L2 LINE L2 3083 3301 -12 294 95 0 0 chr12 3998813 3998855 -139787600 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 215 340 117 10 chr12 4000100 4000203 -139786252 + MIR SINE MIR 7 120 -142 209 309 0 60 chr12 4001228 4001312 -139785143 - MIR3 SINE MIR -13 195 117 362 331 66 22 chr12 4003170 4003351 -139783104 + L3b LINE CR1 1185 1373 -210 269 315 46 0 chr12 4003902 4004010 -139782445 + MIR3 SINE MIR 89 201 -7 270 235 66 175 chr12 4004677 4004783 -139781672 - MIR SINE MIR -12 250 171 2417 82 0 7 chr12 4004783 4005077 -139781378 + AluSg SINE Alu 1 292 -18 270 235 66 175 chr12 4005077 4005153 -139781302 - MIR SINE MIR -91 171 88 188 184 20 0 chr12 4005237 4005286 -139781169 + (TTCA)n Simple_repeat Simple_repeat 2 51 0 637 241 60 18 chr12 4006161 4006327 -139780128 - MIR3 SINE MIR -15 193 21 283 289 55 31 chr12 4006764 4006892 -139779563 - L1MC4a LINE L1 -1834 5974 5844 229 263 18 0 chr12 4007012 4007069 -139779386 - L3 LINE CR1 -1 1576 1519 358 172 0 23 chr12 4008176 4008263 -139778192 + CT-rich Low_complexity Low_complexity 3 87 0 294 271 104 21 chr12 4008294 4008390 -139778065 - L2 LINE L2 -1 3271 3168 266 0 0 29 chr12 4008795 4008830 -139777625 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2154 24 8 0 chr12 4008830 4009079 -139777376 - L1PA4 LINE L1 -10 6145 5895 220 365 44 25 chr12 4009853 4010012 -139776443 - MIR SINE MIR -64 198 37 459 264 208 6 chr12 4011002 4011161 -139775294 + MIR SINE MIR 15 205 -57 216 280 0 0 chr12 4011613 4011663 -139774792 + MIR SINE MIR 201 250 -12 198 316 18 0 chr12 4011751 4011808 -139774647 - L3 LINE CR1 -3 1574 1517 1194 241 89 51 chr12 4011995 4012443 -139774012 + L2 LINE L2 1474 1938 -1376 770 259 154 54 chr12 4012447 4013041 -139773414 + L2 LINE L2 2647 3313 0 189 74 0 0 chr12 4013043 4013070 -139773385 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 188 132 0 26 chr12 4013976 4014014 -139772441 + (TA)n Simple_repeat Simple_repeat 2 38 0 180 339 18 0 chr12 4014014 4014070 -139772385 - L3 LINE CR1 -4 1573 1517 775 53 59 6 chr12 4014130 4014299 -139772156 + (TA)n Simple_repeat Simple_repeat 1 178 0 306 104 0 42 chr12 4014311 4014359 -139772096 + L1MC4 LINE L1 6658 6703 -1339 1786 186 7 0 chr12 4015549 4015834 -139770621 + AluJo SINE Alu 1 287 -25 2384 96 0 0 chr12 4016699 4017000 -139769455 - AluSg SINE Alu -9 301 1 267 368 9 9 chr12 4017539 4017645 -139768810 - L2 LINE L2 0 3313 3208 512 286 19 26 chr12 4017663 4017817 -139768638 - L2 LINE L2 -6 3307 3155 192 179 0 0 chr12 4018567 4018606 -139767849 + (TG)n Simple_repeat Simple_repeat 2 40 0 270 321 16 0 chr12 4019067 4019163 -139767292 - MIR SINE MIR -87 121 40 339 301 72 57 chr12 4019210 4019368 -139767087 + L2 LINE L2 3100 3263 -50 186 103 0 0 chr12 4019368 4019397 -139767058 + (CAT)n Simple_repeat Simple_repeat 3 31 0 339 301 72 57 chr12 4019397 4019447 -139767008 + L2 LINE L2 3263 3311 -2 3402 86 55 6 chr12 4020157 4020645 -139765810 - LTR10D LTR ERV1 0 513 2 183 286 29 29 chr12 4020685 4020755 -139765700 - L2 LINE L2 -4 3268 3199 251 294 12 35 chr12 4021503 4021588 -139764867 - MIR SINE MIR -72 190 108 955 216 118 0 chr12 4021792 4022149 -139764306 + L1ME4a LINE L1 5526 5924 -197 1767 155 7 4 chr12 4022282 4022559 -139763896 + AluJo SINE Alu 25 302 -10 303 239 50 13 chr12 4025316 4025422 -139761033 - MIR SINE MIR -71 137 72 425 310 23 47 chr12 4025575 4025707 -139760748 + MIR3 SINE MIR 34 163 -45 2784 102 72 5 chr12 4025707 4026108 -139760347 - MSTA LTR MaLR 0 428 1 425 310 23 47 chr12 4026108 4026146 -139760309 + MIR3 SINE MIR 163 200 -8 185 315 0 19 chr12 4027349 4027403 -139759052 - L3 LINE CR1 -10 1567 1515 344 194 30 119 chr12 4027941 4028075 -139758380 - MIR3 SINE MIR -54 154 33 271 254 0 0 chr12 4028880 4028935 -139757520 + (TG)n Simple_repeat Simple_repeat 1 55 0 264 149 0 0 chr12 4029683 4029730 -139756725 + (TCC)n Simple_repeat Simple_repeat 1 47 0 917 131 12 0 chr12 4029810 4030064 -139756391 + GA-rich Low_complexity Low_complexity 1 257 0 504 287 14 14 chr12 4030080 4030223 -139756232 - MIR3 SINE MIR -63 145 3 348 236 0 0 chr12 4030789 4030861 -139755594 - L2 LINE L2 -39 3233 3162 457 179 0 13 chr12 4031472 4031550 -139754905 - L2 LINE L2 -43 3270 3194 224 379 0 0 chr12 4031614 4031680 -139754775 + L2 LINE L2 3121 3186 -86 189 282 128 81 chr12 4033015 4033164 -139753291 - MER5B DNA MER1_type -6 172 17 581 261 147 0 chr12 4033184 4033341 -139753114 - MER5A DNA MER1_type -1 188 9 472 224 7 92 chr12 4033750 4033902 -139752553 + L3b LINE CR1 1210 1348 -235 422 324 7 21 chr12 4034764 4034909 -139751546 - MIR3 SINE MIR -21 187 45 195 129 0 0 chr12 4035408 4035439 -139751016 + (CA)n Simple_repeat Simple_repeat 2 32 0 232 309 25 0 chr12 4035670 4035751 -139750704 - MIR SINE MIR -86 122 40 2093 103 0 0 chr12 4036383 4036655 -139749800 - AluSg1 SINE Alu 0 309 38 181 214 24 0 chr12 4037027 4037069 -139749386 + L2 LINE L2 2949 2991 -322 187 229 0 0 chr12 4037468 4037503 -139748952 + MIR SINE MIR 111 145 -63 275 270 79 11 chr12 4039118 4039207 -139747248 - L3 LINE CR1 -113 1464 1370 1214 226 55 0 chr12 4039567 4039859 -139746596 + MER46C DNA MER2_type 8 315 -23 180 111 0 0 chr12 4039866 4039893 -139746562 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 212 303 50 40 chr12 4040583 4040682 -139745773 + MIR SINE MIR 64 163 -99 192 288 17 17 chr12 4041747 4041806 -139744649 - L2 LINE L2 0 3313 3255 189 229 167 111 chr12 4041915 4042059 -139744396 + MIR SINE MIR 65 216 -46 309 348 44 40 chr12 4042173 4042400 -139744055 - L2 LINE L2 -17 3255 3028 204 240 0 0 chr12 4043717 4043767 -139742688 + T-rich Low_complexity Low_complexity 2 51 0 228 292 73 21 chr12 4044357 4044453 -139742002 + MIR3 SINE MIR 81 181 -27 317 125 18 0 chr12 4044628 4044684 -139741771 + (TG)n Simple_repeat Simple_repeat 2 58 0 1478 186 78 0 chr12 4045058 4045164 -139741291 + AluJo SINE Alu 1 97 -215 468 0 0 0 chr12 4045164 4045216 -139741239 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 1478 186 78 0 chr12 4045216 4045378 -139741077 + AluJo SINE Alu 97 290 -22 447 293 75 28 chr12 4045504 4045716 -139740739 + MIR SINE MIR 41 262 0 3029 253 40 32 chr12 4046680 4046821 -139739634 - L1M4c LINE L1 -3649 2733 2595 2393 86 0 7 chr12 4046821 4047123 -139739332 - AluSq SINE Alu -8 305 6 3029 253 40 32 chr12 4047123 4048679 -139737776 - L1M4c LINE L1 -3787 2595 916 213 250 211 0 chr12 4050146 4050222 -139736233 + L2 LINE L2 3148 3239 -33 245 267 102 51 chr12 4050688 4050864 -139735591 + MIR SINE MIR 76 260 -2 809 104 0 14 chr12 4051274 4051418 -139735037 + L1MB4 LINE L1 6039 6180 0 324 340 61 0 chr12 4052123 4052270 -139734185 + L3 LINE CR1 1287 1442 -135 211 269 0 30 chr12 4052484 4052551 -139733904 + CT-rich Low_complexity Low_complexity 3 67 0 257 313 0 0 chr12 4052814 4052878 -139733577 + C-rich Low_complexity Low_complexity 2 65 0 202 300 11 33 chr12 4053187 4053277 -139733178 - MIR SINE MIR -59 149 62 217 200 0 0 chr12 4053724 4053769 -139732686 + MER5B DNA MER1_type 5 49 -129 823 201 74 0 chr12 4053799 4053948 -139732507 + FRAM SINE Alu 1 152 -24 279 0 0 0 chr12 4054389 4054420 -139732035 + (CA)n Simple_repeat Simple_repeat 2 32 0 1826 147 33 52 chr12 4054659 4055027 -139731428 + MER46B DNA MER2_type 1 236 0 258 300 18 36 chr12 4056762 4056872 -139729583 - MIR3 SINE MIR 0 208 101 458 311 34 28 chr12 4056940 4057117 -139729338 - L2 LINE L2 0 3272 3095 639 252 24 16 chr12 4057275 4057466 -139728989 - MIR SINE MIR -51 157 5 393 270 38 44 chr12 4057900 4058059 -139728396 - MIR SINE MIR -71 191 34 436 327 116 33 chr12 4058747 4059273 -139727182 + L2 LINE L2 2709 3271 -1 350 293 86 9 chr12 4060618 4060734 -139725721 - MIR SINE MIR -113 149 25 180 111 0 0 chr12 4064309 4064336 -139722119 + (CA)n Simple_repeat Simple_repeat 1 27 0 190 313 71 18 chr12 4065080 4065192 -139721263 - L3b LINE CR1 -126 1457 1340 1502 160 91 29 chr12 4066381 4066656 -139719799 + AluJo SINE Alu 12 303 -9 303 309 70 91 chr12 4067009 4067239 -139719216 + L2 LINE L2 3030 3254 -18 394 301 160 14 chr12 4067442 4067661 -139718794 + L3 LINE CR1 1213 1463 -114 3515 143 23 77 chr12 4068062 4068274 -139718181 + L1MA9 LINE L1 5571 5793 -519 276 30 0 0 chr12 4068274 4068307 -139718148 + (TG)n Simple_repeat Simple_repeat 1 33 0 3515 143 23 77 chr12 4068307 4068878 -139717577 + L1MA9 LINE L1 5793 6312 0 658 256 117 9 chr12 4069150 4069380 -139717075 - MIR SINE MIR -6 256 2 545 243 75 17 chr12 4069380 4069553 -139716902 + MER5A DNA MER1_type 3 185 -4 1063 341 68 35 chr12 4069618 4070575 -139715880 - L2 LINE L2 -480 2834 1846 870 323 84 36 chr12 4070572 4071374 -139715081 - L2 LINE L2 -4 3309 2462 * 23 0 0 0 chr12 4071895 4071918 -139714537 + AT_rich Low_complexity Low_complexity 1 23 0 786 268 102 27 chr12 4072059 4072836 -139713619 + L1MDa LINE L1 1030 1934 -4448 369 333 32 38 chr12 4072853 4073091 -139713364 + MIR SINE MIR 20 256 -6 2354 89 7 0 chr12 4073307 4073598 -139712857 + AluSc SINE Alu 1 293 -16 227 297 10 69 chr12 4074050 4074151 -139712304 + MIR SINE MIR 20 114 -148 603 217 31 37 chr12 4074381 4074542 -139711913 + MIR SINE MIR 10 169 -93 227 203 57 51 chr12 4075150 4075268 -139711187 - MIR SINE MIR -43 219 102 320 247 37 0 chr12 4077239 4077320 -139709135 + MIR SINE MIR 83 166 -96 355 301 101 7 chr12 4078105 4078283 -139708172 + MIR SINE MIR 19 214 -48 529 110 11 0 chr12 4078530 4078621 -139707834 + L1MB3 LINE L1 6088 6179 -4 2287 119 0 19 chr12 4079145 4079510 -139706945 + AluSp SINE Alu 1 313 0 1119 130 22 11 chr12 4079836 4080021 -139706434 + MLT1A2 LTR MaLR 1 187 -187 206 129 14 57 chr12 4080022 4080092 -139706363 + CT-rich Low_complexity Low_complexity 1 67 0 700 208 126 1 chr12 4080094 4080267 -139706188 + MLT1B LTR MaLR 163 382 -8 700 232 29 77 chr12 4080779 4080986 -139705469 + MIR SINE MIR 18 214 -48 813 275 9 13 chr12 4082630 4082859 -139703596 + MIR SINE MIR 2 229 -33 392 243 29 0 chr12 4082887 4082990 -139703465 - MER94 DNA DNA -17 117 12 189 74 0 0 chr12 4083418 4083445 -139703010 + (TTG)n Simple_repeat Simple_repeat 2 28 0 428 0 19 0 chr12 4083449 4083501 -139702954 + (TG)n Simple_repeat Simple_repeat 2 54 0 2264 120 7 0 chr12 4083579 4083888 -139702567 - AluSq SINE Alu -2 311 1 256 313 120 0 chr12 4083959 4084113 -139702342 + MIR SINE MIR 21 197 -11 708 246 33 6 chr12 4084724 4084907 -139701548 + MIR SINE MIR 48 235 -27 180 215 183 21 chr12 4085740 4085833 -139700622 - L3 LINE CR1 -190 1387 1280 537 110 0 0 chr12 4085964 4086055 -139700400 + (CA)n Simple_repeat Simple_repeat 1 91 0 546 154 0 45 chr12 4086300 4086410 -139700045 + MIR3 SINE MIR 74 179 -29 29 0 0 0 chr12 4086615 4086644 -139699811 + GC_rich Low_complexity Low_complexity 1 29 0 351 289 111 32 chr12 4087379 4087569 -139698886 + L2 LINE L2 2864 3068 -204 358 206 10 69 chr12 4087946 4088048 -139698407 - MIR3 SINE MIR -10 198 103 602 285 94 8 chr12 4088175 4088410 -139698045 + MIR SINE MIR 7 261 -1 201 275 0 29 chr12 4088853 4088922 -139697533 - MIR SINE MIR -119 143 77 233 233 0 0 chr12 4089060 4089103 -139697352 + MER45A DNA AcHobo 1 43 -135 1275 81 0 71 chr12 4089104 4089302 -139697153 - MER1B DNA MER1_type 0 339 156 258 141 14 141 chr12 4089278 4089349 -139697106 - MER1B DNA MER1_type -275 62 1 * 563 263 8 8 chr12 4089354 4089487 -139696968 + MER45A DNA AcHobo 43 175 -3 218 295 114 0 chr12 4091467 4091572 -139694883 - MIR3 SINE MIR -22 186 70 2751 95 28 8 chr12 4092216 4092573 -139693882 - THE1B LTR MaLR 0 364 1 565 310 0 11 chr12 4092891 4093065 -139693390 + MIR SINE MIR 72 243 -19 206 170 0 21 chr12 4093072 4093119 -139693336 + GA-rich Low_complexity Low_complexity 4 49 0 408 111 0 123 chr12 4093143 4093224 -139693231 + AluJo SINE Alu 81 151 -161 2279 113 147 26 chr12 4093224 4093391 -139693064 + MSTA LTR MaLR 1 147 -281 2722 87 20 0 chr12 4093391 4093736 -139692719 + THE1A LTR MaLR 1 352 -3 2279 113 147 26 chr12 4093736 4093950 -139692505 + MSTA LTR MaLR 147 428 0 582 148 0 0 chr12 4093961 4094049 -139692406 + AluJ/FRAM SINE Alu 220 307 -5 329 209 14 0 chr12 4094049 4094189 -139692266 + GA-rich Low_complexity Low_complexity 1 142 0 323 314 71 40 chr12 4094590 4094816 -139691639 + L1ME1 LINE L1 11 243 -6616 262 289 37 23 chr12 4095197 4095396 -139691059 + L1M4b LINE L1 1035 1345 -5602 2392 97 0 0 chr12 4095408 4095707 -139690748 + AluSg SINE Alu 1 299 -11 2178 123 0 16 chr12 4095710 4096026 -139690429 + AluY SINE Alu 1 311 0 1172 252 62 18 chr12 4096039 4096440 -139690015 + L1M4b LINE L1 1209 1627 -5232 1865 256 46 49 chr12 4096447 4097291 -139689164 + L1M4b LINE L1 2273 3114 -4024 2217 238 30 30 chr12 4097363 4097969 -139688486 + L1ME1 LINE L1 394 999 -5439 339 267 57 0 chr12 4097975 4098080 -139688375 + L1MCb LINE L1 1425 1535 -5324 279 189 0 0 chr12 4098082 4098135 -139688320 + L1ME1 LINE L1 1008 1060 -5378 2045 178 37 32 chr12 4098136 4098682 -139687773 - MLT2A2 LTR ERVL 0 554 1 3365 189 53 22 chr12 4098686 4098766 -139687689 + L1ME1 LINE L1 1064 1140 -5787 2459 67 0 0 chr12 4098766 4099063 -139687392 + AluY SINE Alu 1 297 -14 3365 189 53 22 chr12 4099063 4099966 -139686489 + L1ME1 LINE L1 1140 2075 -4852 316 75 0 0 chr12 4099966 4100006 -139686449 - MLT2B1 LTR ERVL -2 518 479 396 0 0 0 chr12 4100006 4100050 -139686405 + (CA)n Simple_repeat Simple_repeat 2 45 0 377 265 0 24 chr12 4100059 4100225 -139686230 + CT-rich Low_complexity Low_complexity 1 162 0 1892 208 88 14 chr12 4100318 4100736 -139685719 - MLT2B1 LTR ERVL -71 449 1 1777 198 275 15 chr12 4100747 4100946 -139685509 + L1ME1 LINE L1 2099 2245 -4712 2622 55 0 0 chr12 4100946 4101256 -139685199 - AluY SINE Alu -1 310 1 1777 198 275 15 chr12 4101256 4101743 -139684712 + L1ME1 LINE L1 2245 2964 -3993 1348 161 5 0 chr12 4101793 4102004 -139684451 + AluSp SINE Alu 1 212 -101 372 109 0 0 chr12 4102004 4102059 -139684396 + AluSp SINE Alu 78 132 -171 2418 80 3 0 chr12 4102061 4102360 -139684095 + AluSp SINE Alu 1 300 -13 3201 210 50 21 chr12 4102363 4103287 -139683168 + L1ME1 LINE L1 2968 3919 -3038 3109 245 41 28 chr12 4103290 4104196 -139682259 + L1ME1 LINE L1 5302 6195 -950 2483 68 0 0 chr12 4104196 4104488 -139681967 + AluY SINE Alu 1 292 -19 3109 245 41 28 chr12 4104488 4104936 -139681519 + L1ME1 LINE L1 6195 6636 -509 2302 71 3 17 chr12 4104936 4105233 -139681222 + AluY SINE Alu 1 293 -18 3109 245 41 28 chr12 4105233 4105525 -139680930 + L1ME1 LINE L1 6636 7145 0 472 267 103 51 chr12 4106410 4106702 -139679753 - L2 LINE L2 -2 3311 3005 2296 66 10 30 chr12 4107851 4108155 -139678300 + AluY SINE Alu 1 298 -13 1969 112 52 75 chr12 4108370 4108585 -139677870 + THE1C LTR MaLR 1 205 -170 207 0 0 0 chr12 4108585 4108608 -139677847 + (TC)n Simple_repeat Simple_repeat 1 23 0 1969 112 52 75 chr12 4108608 4108776 -139677679 + THE1C LTR MaLR 205 375 0 1110 268 224 30 chr12 4109497 4110507 -139675948 - L2 LINE L2 -38 3275 2075 339 343 62 19 chr12 4110520 4110730 -139675725 + L2 LINE L2 2661 2879 -435 211 363 97 8 chr12 4110708 4110832 -139675623 + L2 LINE L2 3089 3223 -49 * 373 130 0 26 chr12 4110851 4110928 -139675527 + (GGAA)n Simple_repeat Simple_repeat 4 78 0 25 0 0 0 chr12 4112053 4112078 -139674377 + AT_rich Low_complexity Low_complexity 1 25 0 1505 209 20 29 chr12 4112121 4112470 -139673985 - L1ME2 LINE L1 -28 6136 5791 3090 213 83 18 chr12 4112476 4113236 -139673219 - L1ME1 LINE L1 -35 6200 5392 848 60 0 0 chr12 4113255 4113355 -139673100 + AluSg SINE Alu 1 100 -210 2247 112 0 3 chr12 4113403 4113706 -139672749 + AluSg SINE Alu 1 302 -8 7385 216 93 89 chr12 4113706 4114461 -139671994 - L1ME1 LINE L1 -846 5369 4619 1109 184 44 0 chr12 4114461 4114667 -139671788 - AluJb SINE Alu -14 298 84 7385 216 93 89 chr12 4114667 4115348 -139671107 - L1ME1 LINE L1 -1596 4619 3943 2586 113 88 10 chr12 4115348 4115745 -139670710 + MSTA LTR MaLR 1 428 0 7385 216 93 89 chr12 4115745 4115956 -139670499 - L1ME1 LINE L1 -2272 3943 3734 2262 103 3 19 chr12 4115956 4116266 -139670189 - AluSx SINE Alu -7 305 1 7385 216 93 89 chr12 4116266 4116703 -139669752 - L1ME1 LINE L1 -2481 3734 3300 2259 99 6 13 chr12 4116703 4117015 -139669440 - AluSq SINE Alu -3 310 1 7385 216 93 89 chr12 4117015 4117099 -139669356 - L1ME1 LINE L1 -2915 3300 3218 666 216 0 43 chr12 4117099 4117260 -139669195 - FLAM_A SINE Alu 0 133 1 7385 216 93 89 chr12 4117260 4118443 -139668012 - L1ME1 LINE L1 -2997 3218 1853 2463 72 7 3 chr12 4118443 4118750 -139667705 - AluY SINE Alu -3 308 1 7385 216 93 89 chr12 4118750 4118966 -139667489 - L1ME1 LINE L1 -4362 1853 1639 4976 139 57 4 chr12 4118958 4119987 -139666468 - L1MB1 LINE L1 0 6168 5086 * 9398 74 21 4 chr12 4119988 4121247 -139665208 - L1PA7 LINE L1 -897 5249 3969 7452 49 2 24 chr12 4121247 4122161 -139664294 + L1PA7 LINE L1 5260 6154 0 3745 188 57 6 chr12 4122161 4122954 -139663501 - L1MB1 LINE L1 -1054 5092 4260 510 301 0 7 chr12 4123301 4123444 -139663011 - L1ME1 LINE L1 -6120 276 135 1746 141 44 0 chr12 4123539 4123809 -139662646 - MSTB LTR MaLR -144 282 1 210 220 160 0 chr12 4123813 4123863 -139662592 - MIR SINE MIR -200 62 5 736 238 114 5 chr12 4125001 4125203 -139661252 + LTR50 LTR ERVL 1 224 -571 570 257 153 8 chr12 4125356 4125605 -139660850 + LTR50 LTR ERVL 503 787 -8 347 196 244 11 chr12 4125725 4125854 -139660601 + MIR SINE MIR 2 159 -49 413 197 0 0 chr12 4125856 4125932 -139660523 + MER53 DNA DNA 33 108 -81 2192 82 0 4 chr12 4126000 4126279 -139660176 + AluSx SINE Alu 1 278 -34 192 97 0 0 chr12 4126890 4126921 -139659534 + (CA)n Simple_repeat Simple_repeat 2 32 0 468 252 98 28 chr12 4128168 4128311 -139658144 - MIR SINE MIR -21 241 89 237 250 0 18 chr12 4128314 4128370 -139658085 - tRNA-Gln-CAG tRNA tRNA -15 60 6 2512 81 0 0 chr12 4128436 4128746 -139657709 + AluY SINE Alu 1 310 -1 214 231 0 0 chr12 4130056 4130095 -139656360 - L3 LINE CR1 -11 1566 1528 258 290 0 0 chr12 4130186 4130248 -139656207 - L2 LINE L2 -2 3311 3250 674 310 49 13 chr12 4130433 4130659 -139655796 - L3b LINE CR1 -123 1460 1227 1863 227 68 36 chr12 4131087 4131615 -139654840 + MER74B LTR ERVL 56 600 -22 826 190 231 93 chr12 4131622 4131943 -139654512 - MLT1A1 LTR MaLR 0 365 1 442 206 19 0 chr12 4132740 4132834 -139653621 + MLT1A2 LTR MaLR 1 103 -262 * 655 152 62 0 chr12 4132831 4132943 -139653512 + MLT1A2 LTR MaLR 256 374 0 376 314 16 0 chr12 4133195 4133319 -139653136 + L3 LINE CR1 691 816 -761 476 247 88 0 chr12 4133379 4133549 -139652906 - L1ME4a LINE L1 -215 5906 5722 368 338 186 18 chr12 4133591 4134032 -139652423 + L3 LINE CR1 802 1316 -261 315 313 35 76 chr12 4134198 4134396 -139652059 + L2 LINE L2 2085 2274 -1040 412 303 123 59 chr12 4134463 4134885 -139651570 - MLT1K LTR MaLR -3 585 137 313 315 49 120 chr12 4135248 4135680 -139650775 + L2 LINE L2 2862 3262 -10 330 298 172 40 chr12 4136421 4136619 -139649836 - MIR SINE MIR -18 244 21 311 306 144 39 chr12 4137411 4137640 -139648815 + L3b LINE CR1 1304 1556 -27 2501 61 7 3 chr12 4138071 4138381 -139648074 + AluY SINE Alu 1 311 0 238 311 185 0 chr12 4138385 4138520 -139647935 + L3 LINE CR1 1345 1504 -73 276 296 144 24 chr12 4138558 4138683 -139647772 + L2 LINE L2 3133 3272 0 2437 226 42 4 chr12 4138742 4139295 -139647160 + MER90 LTR ERV1 1 574 -1 1017 223 34 13 chr12 4139426 4139659 -139646796 - MIR SINE MIR -2 260 23 526 290 22 65 chr12 4140030 4140261 -139646194 + L2 LINE L2 2976 3196 -76 265 286 29 14 chr12 4140569 4140639 -139645816 - MIR SINE MIR -104 104 34 2187 129 0 10 chr12 4143961 4144271 -139642184 + AluSx SINE Alu 1 307 -5 591 111 0 0 chr12 4144271 4144352 -139642103 + (GGAA)n Simple_repeat Simple_repeat 1 81 0 628 119 23 40 chr12 4144352 4144528 -139641927 + GA-rich Low_complexity Low_complexity 3 175 0 267 321 19 38 chr12 4144560 4144666 -139641789 - L3 LINE CR1 -52 1525 1422 210 315 71 16 chr12 4146131 4146258 -139640197 + L3b LINE CR1 1350 1483 -100 2392 88 0 7 chr12 4146452 4146758 -139639697 - AluSx SINE Alu -8 304 1 201 324 44 0 chr12 4148297 4148365 -139638090 - L3 LINE CR1 -19 1558 1488 21 36 0 0 chr12 4148815 4148843 -139637612 + AT_rich Low_complexity Low_complexity 1 28 0 705 298 187 39 chr12 4148880 4149464 -139636991 - L3 LINE CR1 -114 1463 794 669 294 216 13 chr12 4149878 4150266 -139636189 - L3 LINE CR1 -787 790 324 1368 133 0 5 chr12 4150375 4150563 -139635892 + AluSg/x SINE Alu 104 290 -22 2392 82 0 0 chr12 4150563 4150857 -139635598 + AluY SINE Alu 1 294 -17 360 302 121 13 chr12 4151475 4151624 -139634831 - MER5A DNA MER1_type -24 165 1 918 321 181 28 chr12 4151651 4153007 -139633448 + L2 LINE L2 1083 2645 -669 902 189 19 53 chr12 4153023 4153229 -139633226 - MER20 DNA MER1_type -20 199 1 509 311 28 6 chr12 4153229 4153406 -139633049 + L2 LINE L2 2660 2840 -474 193 364 116 23 chr12 4153462 4153635 -139632820 + L2 LINE L2 2788 2976 -338 300 300 12 0 chr12 4153796 4153876 -139632579 + L2 LINE L2 3228 3308 -5 255 254 61 50 chr12 4154636 4154817 -139631638 + L1MC5 LINE L1 7732 7914 -47 2667 17 0 3 chr12 4155970 4156271 -139630184 + AluY SINE Alu 1 300 -11 251 269 17 34 chr12 4157006 4157125 -139629330 - L1MC4a LINE L1 -1874 5934 5818 339 215 0 0 chr12 4157125 4157190 -139629265 + L2 LINE L2 3249 3313 0 838 287 108 25 chr12 4157191 4157287 -139629168 - L1MC4a LINE L1 -1986 5822 5735 2175 111 3 3 chr12 4157287 4157585 -139628870 + AluSx SINE Alu 1 298 -14 838 287 108 25 chr12 4157585 4157885 -139628570 - L1MC4a LINE L1 -2073 5735 5393 2177 77 3 24 chr12 4159384 4159682 -139626773 - AluY SINE Alu -19 292 1 2203 89 13 7 chr12 4161920 4162224 -139624231 + AluSg SINE Alu 1 306 -4 549 327 80 9 chr12 4163012 4163238 -139623217 + MIR SINE MIR 5 246 -16 811 240 144 0 chr12 4164300 4164529 -139621926 - MIR SINE MIR 0 262 1 293 251 18 104 chr12 4165094 4165257 -139621198 + MIR SINE MIR 79 227 -35 1484 194 17 17 chr12 4166971 4167260 -139619195 + AluJo SINE Alu 1 289 -23 2484 261 46 24 chr12 4167280 4168004 -139618451 + L1M4b LINE L1 69 816 -6043 2177 134 0 3 chr12 4168004 4168318 -139618137 + AluSq SINE Alu 1 313 0 2484 261 46 24 chr12 4168318 4168444 -139618011 + L1M4b LINE L1 816 938 -5921 227 143 0 127 chr12 4168677 4168740 -139617715 + L1M4b LINE L1 1160 1214 -5645 1883 223 44 77 chr12 4168953 4170154 -139616301 + L1M4b LINE L1 1205 2329 -4630 4209 164 11 9 chr12 4170279 4171024 -139615431 + L1MA4 LINE L1 1241 1986 -4579 3566 209 46 30 chr12 4171051 4171701 -139614754 + L1MA4 LINE L1 3344 3982 -3583 183 42 0 0 chr12 4171701 4171725 -139614730 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3566 209 46 30 chr12 4171725 4172395 -139614060 + L1MA4 LINE L1 3982 4694 -2871 181 0 0 65 chr12 4172806 4172837 -139613618 + (CCG)n Simple_repeat Simple_repeat 3 31 0 9749 148 25 39 chr12 4179930 4180132 -139606323 + L1MA4 LINE L1 4668 4871 -2848 2511 75 0 3 chr12 4180132 4180440 -139606015 + AluY SINE Alu 5 311 0 9749 148 25 39 chr12 4180440 4180460 -139605995 + L1MA4 LINE L1 4871 4890 -2829 1645 193 30 3 chr12 4180460 4180760 -139605695 + AluJo SINE Alu 5 312 0 9749 148 25 39 chr12 4180760 4183612 -139602843 + L1MA4 LINE L1 4890 7707 -12 30 45 0 0 chr12 4183613 4183657 -139602798 + AT_rich Low_complexity Low_complexity 1 44 0 4661 154 35 5 chr12 4183957 4184784 -139601671 + Tigger4(Zombi) DNA MER2_type 1 852 -1879 37200 74 8 9 chr12 4184795 4190932 -139595523 + L1PA6 LINE L1 11 6143 -11 9001 127 29 14 chr12 4190940 4192457 -139593998 + Tigger4(Zombi) DNA MER2_type 835 2373 -358 2181 116 0 26 chr12 4192461 4192771 -139593684 + AluSx SINE Alu 1 302 -10 602 188 23 0 chr12 4192771 4192899 -139593556 + Tigger4(Zombi) DNA MER2_type 2542 2672 -59 936 228 46 49 chr12 4192904 4192937 -139593518 + L1MEc LINE L1 2181 2213 -4002 2104 105 14 3 chr12 4192937 4193231 -139593224 + AluSg SINE Alu 1 297 -13 936 228 46 49 chr12 4193231 4193577 -139592878 + L1MEc LINE L1 2213 2526 -3689 * 1659 240 82 99 chr12 4193576 4194307 -139592148 + MLT1A1-int LTR MaLR 410 1121 -250 1503 150 13 86 chr12 4194307 4194621 -139591834 - AluJo SINE Alu -11 301 11 1659 240 82 99 chr12 4194621 4194864 -139591591 + MLT1A1-int LTR MaLR 1121 1367 -4 623 212 36 7 chr12 4194875 4195012 -139591443 + MLT1A1 LTR MaLR 1 141 -224 1076 204 58 10 chr12 4195017 4195396 -139591059 - L1MC/D LINE L1 -743 5472 5150 2197 82 0 4 chr12 4195396 4195675 -139590780 + AluY SINE Alu 1 278 -33 345 104 68 0 chr12 4195691 4195774 -139590681 + L1M LINE L1 5337 5427 -742 1676 155 6 79 chr12 4195799 4196115 -139590340 + AluJo SINE Alu 1 293 -19 265 225 0 0 chr12 4196125 4196205 -139590250 - L1MC/D LINE L1 -1086 5129 5050 28 71 0 0 chr12 4196209 4196265 -139590190 + AT_rich Low_complexity Low_complexity 1 56 0 2498 232 125 6 chr12 4196265 4197148 -139589307 - L1MC/D LINE L1 -1159 5056 4069 1946 233 67 42 chr12 4197148 4197727 -139588728 - MER77 LTR ERV1 0 605 12 5019 250 60 9 chr12 4197735 4199662 -139586793 - L1MEc LINE L1 -2139 4076 2084 662 279 77 0 chr12 4199798 4200045 -139586410 + L2 LINE L2 1897 2162 -1152 1866 143 4 0 chr12 4201832 4202098 -139584357 + AluSx SINE Alu 1 267 -45 457 261 232 44 chr12 4202098 4202481 -139583974 + L2 LINE L2 2213 2667 -647 1808 196 70 21 chr12 4202482 4202956 -139583499 - MLT1D LTR MaLR -8 497 1 891 301 117 24 chr12 4202975 4203560 -139582895 + L2 LINE L2 2670 3295 -18 1156 210 0 13 chr12 4203577 4203806 -139582649 - Tigger7 DNA MER2_type -2240 247 22 567 242 8 8 chr12 4204272 4204400 -139582055 - L2 LINE L2 -2 3311 3184 1563 168 90 9 chr12 4204945 4205267 -139581188 + MER7A DNA MER2_type 1 346 0 3604 162 56 9 chr12 4205421 4206095 -139580360 + MER39 LTR ERV1 1 706 -1 854 115 0 0 chr12 4206470 4206600 -139579855 + AluSg/x SINE Alu 174 303 -9 309 248 239 0 chr12 4207358 4207471 -139578984 + MIR SINE MIR 120 259 -3 2098 117 0 7 chr12 4207915 4208214 -139578241 - AluSx SINE Alu -15 297 1 207 178 44 0 chr12 4208519 4208564 -139577891 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 238 246 172 30 chr12 4208823 4209026 -139577429 - L1 LINE L1 -1710 4436 4205 2214 112 3 0 chr12 4209160 4209456 -139576999 - AluSx SINE Alu -12 300 4 346 311 35 44 chr12 4209487 4209853 -139576602 - L1 LINE L1 -2153 3993 3631 251 209 104 15 chr12 4210323 4210390 -139576065 + Charlie8 DNA MER1_type 183 255 -2162 511 188 21 0 chr12 4210599 4210695 -139575760 - Tigger7 DNA MER2_type -2 2489 2392 * 901 244 81 8 chr12 4210694 4210733 -139575722 - Tigger7 DNA MER2_type -2221 266 231 14796 122 19 30 chr12 4210733 4210953 -139575502 - Tigger1 DNA MER2_type 0 2418 2197 2337 96 0 0 chr12 4210953 4211245 -139575210 + AluSx SINE Alu 1 292 -20 14796 122 19 30 chr12 4211245 4212603 -139573852 - Tigger1 DNA MER2_type -221 2197 871 2280 103 0 10 chr12 4212603 4212913 -139573542 - AluY SINE Alu -3 308 2 14796 122 19 30 chr12 4212913 4213776 -139572679 - Tigger1 DNA MER2_type -1547 871 1 901 244 81 8 chr12 4213776 4213982 -139572473 - Tigger7 DNA MER2_type -2256 231 3 1693 156 69 39 chr12 4213990 4214323 -139572132 - MER2 DNA MER2_type -1 343 1 884 255 91 98 chr12 4215818 4216245 -139570210 - L2 LINE L2 0 3313 2890 297 0 0 0 chr12 4216246 4216279 -139570176 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 303 104 0 0 chr12 4216278 4216326 -139570129 + (TG)n Simple_repeat Simple_repeat 2 49 0 545 288 56 10 chr12 4216441 4216654 -139569801 - MIR SINE MIR -22 240 19 302 139 58 105 chr12 4217137 4217223 -139569232 + L1MB8 LINE L1 6095 6176 -2 979 263 3 24 chr12 4217494 4217791 -139568664 - AluY SINE Alu -9 302 12 226 333 12 0 chr12 4217885 4217969 -139568486 - AluSg/x SINE Alu -15 287 203 453 220 0 0 chr12 4218192 4218310 -139568145 + L1MEc LINE L1 996 1113 -5283 2297 91 0 29 chr12 4218316 4218624 -139567831 + AluY SINE Alu 4 302 -9 381 207 12 0 chr12 4218625 4218707 -139567748 + L1MB5 LINE L1 6082 6164 -10 717 170 15 0 chr12 4218753 4218888 -139567567 + L1PA16 LINE L1 6025 6161 -5 25 0 0 0 chr12 4218888 4218913 -139567542 + AT_rich Low_complexity Low_complexity 1 25 0 2428 58 0 19 chr12 4220057 4220365 -139566090 - AluY SINE Alu -9 302 1 646 94 0 0 chr12 4220448 4220533 -139565922 - AluSg/x SINE Alu -25 284 200 531 271 39 13 chr12 4220644 4220799 -139565656 + MIR3 SINE MIR 41 199 -9 228 339 34 0 chr12 4220864 4220923 -139565532 - L2 LINE L2 -72 3200 3140 189 231 0 0 chr12 4221779 4221818 -139564637 + L3b LINE CR1 1539 1577 -6 230 91 68 0 chr12 4221938 4221982 -139564473 + A-rich Low_complexity Low_complexity 2 48 0 635 128 220 0 chr12 4222351 4222460 -139563995 - FLAM_C SINE Alu 0 133 1 1517 166 31 0 chr12 4222631 4222913 -139563542 - AluJo SINE Alu 0 312 35 1044 314 194 16 chr12 4222913 4223613 -139562842 - L3 LINE CR1 -11 1566 742 686 290 21 29 chr12 4223612 4223850 -139562605 + MIR SINE MIR 27 262 0 * 810 300 67 122 chr12 4223865 4224622 -139561833 - L3 LINE CR1 -835 742 27 502 299 19 7 chr12 4224643 4224797 -139561658 + MIR3 SINE MIR 49 204 -4 298 85 0 51 chr12 4225235 4225294 -139561161 - Alu SINE Alu 0 301 246 2246 99 0 0 chr12 4225326 4225628 -139560827 - AluY SINE Alu -9 302 1 281 304 32 70 chr12 4226564 4226662 -139559793 - L2 LINE L2 0 3313 3213 2267 89 10 23 chr12 4226662 4226966 -139559489 + AluY SINE Alu 1 300 -11 243 0 0 0 chr12 4226966 4226993 -139559462 + (TA)n Simple_repeat Simple_repeat 1 27 0 408 20 0 0 chr12 4226992 4227041 -139559414 + (GA)n Simple_repeat Simple_repeat 2 50 0 281 304 32 70 chr12 4226993 4227099 -139559356 - L2 LINE L2 -98 3215 3162 192 314 35 0 chr12 4228001 4228087 -139558368 - MIR SINE MIR -102 160 72 182 283 92 106 chr12 4228721 4229041 -139557414 + L2 LINE L2 1798 2121 -1193 549 55 0 0 chr12 4229041 4229114 -139557341 + (TC)n Simple_repeat Simple_repeat 1 73 0 182 283 92 106 chr12 4229114 4229284 -139557171 + L2 LINE L2 2121 2284 -1030 1750 176 3 3 chr12 4229284 4229603 -139556852 - AluJo SINE Alu 0 319 1 182 283 92 106 chr12 4229603 4229641 -139556814 + L2 LINE L2 2284 2321 -993 3320 275 87 38 chr12 4229785 4231563 -139554892 + L2 LINE L2 1455 3313 0 182 393 0 0 chr12 4231703 4231759 -139554696 - MIR3 SINE MIR -138 70 15 278 208 78 0 chr12 4232198 4232275 -139554180 - MER102b DNA MER1_type -8 333 251 367 319 22 0 chr12 4232336 4232474 -139553981 - MER102b DNA MER1_type -184 157 17 289 307 146 15 chr12 4232516 4232653 -139553802 + MIR SINE MIR 37 191 -71 190 73 49 24 chr12 4232888 4232929 -139553526 + T-rich Low_complexity Low_complexity 2 43 0 1462 350 85 20 chr12 4233465 4234413 -139552042 + L3 LINE CR1 31 1040 -537 601 278 97 17 chr12 4234504 4234853 -139551602 - L1ME4a LINE L1 -17 6087 5711 1526 289 40 13 chr12 4234873 4235350 -139551105 + L3 LINE CR1 1088 1577 0 341 310 9 26 chr12 4235529 4235645 -139550810 - MIR SINE MIR -50 212 99 182 333 33 33 chr12 4235875 4235965 -139550490 + L2 LINE L2 2690 2779 -535 362 307 82 23 chr12 4236287 4236593 -139549862 - L1ME4a LINE L1 -1299 4830 4507 720 286 54 0 chr12 4236872 4237113 -139549342 + MLT1L LTR MaLR 362 615 0 288 303 116 25 chr12 4237207 4237448 -139549007 - L1ME4a LINE L1 -1786 4343 4081 224 97 0 0 chr12 4237509 4237540 -139548915 + MER91B DNA MER1_type 33 63 -127 524 225 71 50 chr12 4237604 4237786 -139548669 - MLT1J LTR MaLR 0 511 326 761 291 77 44 chr12 4237905 4238506 -139547949 - L1ME4a LINE L1 -2682 3447 2821 902 142 103 0 chr12 4238538 4238693 -139547762 + AluSg/x SINE Alu 136 306 -6 265 309 42 27 chr12 4238970 4239306 -139547149 - L1ME4a LINE L1 -3649 2480 2140 1426 178 94 22 chr12 4239329 4239649 -139546806 + MER2 DNA MER2_type 1 343 -1 2452 58 41 0 chr12 4239821 4240114 -139546341 + AluY SINE Alu 1 305 -6 2192 106 10 0 chr12 4240289 4240581 -139545874 - AluSg1 SINE Alu -14 295 1 687 287 20 45 chr12 4240840 4241192 -139545263 - L1ME4a LINE L1 -4882 1237 895 708 263 174 57 chr12 4241228 4241688 -139544767 + MLT1H LTR MaLR 36 549 0 381 22 0 0 chr12 4242413 4242459 -139543996 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2145 97 4 0 chr12 4242461 4242740 -139543715 - AluY SINE Alu -31 280 1 1059 100 0 0 chr12 4242743 4242873 -139543582 - AluSg SINE Alu -180 130 1 22 35 0 0 chr12 4243006 4243035 -139543420 + AT_rich Low_complexity Low_complexity 1 29 0 359 323 47 8 chr12 4243397 4243524 -139542931 + L2 LINE L2 3141 3272 0 2516 56 0 7 chr12 4243893 4244196 -139542259 - AluY SINE Alu -10 301 1 2388 44 3 99 chr12 4245465 4245809 -139540646 + AluY SINE Alu 1 311 0 821 191 174 4 chr12 4245943 4246214 -139540241 - Charlie5 DNA MER1_type 0 2618 2 2639 59 0 0 chr12 4246767 4247074 -139539381 + AluY SINE Alu 1 307 -4 2501 125 5 16 chr12 4247774 4248142 -139538313 + THE1B LTR MaLR 1 364 0 230 152 51 63 chr12 4248178 4248257 -139538198 - L1M4c LINE L1 -5032 1352 1275 680 101 36 34 chr12 4248818 4248978 -139537477 - MER30 DNA MER1_type 0 230 1 460 324 56 14 chr12 4248978 4249120 -139537335 + MER91A DNA MER1_type 21 168 -28 1454 182 4 29 chr12 4249196 4249497 -139536958 + AluJo SINE Alu 15 308 0 183 42 0 0 chr12 4250422 4250446 -139536009 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2366 62 0 0 chr12 4250446 4250722 -139535733 - AluY SINE Alu -35 276 1 22 0 0 0 chr12 4250850 4250872 -139535583 + AT_rich Low_complexity Low_complexity 1 22 0 436 357 20 25 chr12 4250888 4251132 -139535323 - L2 LINE L2 -108 3164 2922 368 261 8 76 chr12 4251259 4251378 -139535077 - MLT1-int LTR MaLR -233 1138 1028 285 346 15 15 chr12 4251542 4251672 -139534783 - MLT1-int LTR MaLR -478 893 764 2286 113 7 0 chr12 4251941 4252250 -139534205 - AluSx SINE Alu -1 311 1 506 267 46 41 chr12 4252351 4252546 -139533909 - MLT1-int LTR MaLR -777 594 399 2234 130 30 28 chr12 4252558 4252920 -139533535 + THE1B LTR MaLR 1 363 -1 407 288 35 40 chr12 4252967 4253165 -139533290 - MLT1-int LTR MaLR -1158 213 17 2113 132 0 0 chr12 4253613 4253916 -139532539 - AluSx SINE Alu -9 303 1 351 353 0 20 chr12 4254011 4254161 -139532294 + MIR SINE MIR 85 231 -31 297 0 0 0 chr12 4254368 4254401 -139532054 + (A)n Simple_repeat Simple_repeat 1 33 0 183 42 0 0 chr12 4255993 4256017 -139530438 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 234 81 0 0 chr12 4256020 4256057 -139530398 + (T)n Simple_repeat Simple_repeat 1 37 0 247 161 195 11 chr12 4257541 4257628 -139528827 - MIR SINE MIR -99 163 61 257 191 209 29 chr12 4258182 4258287 -139528168 + MIR SINE MIR 50 173 -89 374 278 21 0 chr12 4258353 4258450 -139528005 + MIR SINE MIR 164 262 0 372 43 0 0 chr12 4258471 4258517 -139527938 + (CAT)n Simple_repeat Simple_repeat 3 48 0 192 339 83 18 chr12 4258841 4258950 -139527505 - L2 LINE L2 -19 3294 3179 293 211 0 0 chr12 4258963 4259020 -139527435 - MER5A DNA MER1_type -3 186 130 213 121 0 0 chr12 4259943 4259976 -139526479 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 254 364 28 0 chr12 4261376 4261519 -139524936 + L2 LINE L2 2914 3060 -212 338 136 17 0 chr12 4261667 4261726 -139524729 - MER91 DNA MER1_type -14 126 67 3623 149 0 12 chr12 4262479 4263070 -139523385 + L1PA16 LINE L1 5582 6165 -1 408 279 107 46 chr12 4263315 4263512 -139522943 + MIR SINE MIR 20 228 -34 418 370 67 26 chr12 4263988 4264329 -139522126 + L2 LINE L2 2912 3266 -6 180 111 0 0 chr12 4264968 4264995 -139521460 + (TG)n Simple_repeat Simple_repeat 2 28 0 219 333 14 0 chr12 4266316 4266388 -139520067 + MIR3 SINE MIR 127 199 -9 324 247 0 12 chr12 4268827 4268908 -139517547 + MIR SINE MIR 69 148 -114 226 160 0 40 chr12 4268939 4268989 -139517466 + L2 LINE L2 3265 3312 -1 1123 180 52 14 chr12 4269213 4269424 -139517031 - MER20 DNA MER1_type 0 219 1 7696 167 28 46 chr12 4269591 4270654 -139515801 + L1MCa LINE L1 3 1029 -5397 2501 72 0 0 chr12 4270654 4270959 -139515496 + AluY SINE Alu 1 305 -6 7696 167 28 46 chr12 4270959 4271492 -139514963 + L1MCa LINE L1 1029 1570 -4856 3886 180 27 70 chr12 4271473 4271789 -139514666 + L1MB1 LINE L1 2256 2584 -3864 * 2147 92 0 7 chr12 4271789 4272108 -139514347 + AluY SINE Alu 1 317 0 3886 180 27 70 chr12 4272108 4272874 -139513581 + L1MB1 LINE L1 2584 6341 -107 1992 34 0 8 chr12 4272876 4273114 -139513341 + AluY SINE Alu 1 236 -75 6615 186 68 34 chr12 4273132 4273936 -139512519 + L1MC3 LINE L1 5127 5902 -244 2007 111 50 0 chr12 4273936 4274216 -139512239 + AluSg SINE Alu 1 294 -16 6615 186 68 34 chr12 4274216 4274974 -139511481 + L1MC3 LINE L1 5902 5302 -844 222 37 0 0 chr12 4274974 4275001 -139511454 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6615 186 68 34 chr12 4275001 4275108 -139511347 + L1MC3 LINE L1 5301 5403 -743 262 233 0 0 chr12 4275205 4275248 -139511207 + LTR49-int LTR ERV1 1244 1286 -5045 1044 49 0 21 chr12 4275309 4275453 -139511002 + L1MA5 LINE L1 6158 6298 -2 567 230 58 0 chr12 4276323 4276462 -139509993 + MIR SINE MIR 106 252 -10 306 304 25 50 chr12 4276549 4276710 -139509745 + L2 LINE L2 2935 3091 -181 185 324 162 14 chr12 4277628 4277776 -139508679 - L3b LINE CR1 -310 1273 1104 1546 87 0 5 chr12 4277790 4277985 -139508470 + AluY SINE Alu 102 295 -16 2913 214 98 50 chr12 4278045 4278101 -139508354 - L1MC4 LINE L1 -3 8039 7987 1923 137 21 3 chr12 4278101 4278385 -139508070 + AluJb SINE Alu 1 289 -23 2913 214 98 50 chr12 4278385 4278559 -139507896 - L1MC4 LINE L1 -55 7987 7823 2309 125 0 0 chr12 4278559 4278870 -139507585 + AluSq SINE Alu 1 311 -2 2913 214 98 50 chr12 4278870 4278926 -139507529 - L1MC4 LINE L1 -219 7823 7771 2525 64 0 0 chr12 4278926 4279222 -139507233 + AluY SINE Alu 1 296 -15 2913 214 98 50 chr12 4279222 4279948 -139506507 - L1MC4 LINE L1 -271 7771 6977 185 317 33 0 chr12 4281710 4281770 -139504685 + MIR SINE MIR 86 147 -115 295 328 8 0 chr12 4281771 4281890 -139504565 + (TA)n Simple_repeat Simple_repeat 1 120 0 245 261 31 0 chr12 4281905 4281970 -139504485 - MIR SINE MIR -115 147 81 994 339 133 6 chr12 4282064 4282907 -139503548 + L2 LINE L2 1806 2755 -559 1901 166 54 58 chr12 4282933 4283361 -139503094 + MSTB1 LTR MaLR 7 432 0 276 370 43 24 chr12 4283361 4283680 -139502775 + L2 LINE L2 2747 3069 -203 1855 156 11 3 chr12 4284368 4284651 -139501804 - AluSx SINE Alu -18 294 10 830 196 26 0 chr12 4284725 4284878 -139501577 - MER45A DNA AcHobo -1 177 21 408 239 62 18 chr12 4284924 4285037 -139501418 - L2 LINE L2 0 3313 3196 951 57 0 0 chr12 4285037 4285159 -139501296 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 354 68 0 0 chr12 4285159 4285203 -139501252 - Alu SINE Alu -18 283 240 2136 108 4 0 chr12 4285231 4285533 -139500922 - AluSg SINE Alu 0 304 2 2456 151 66 11 chr12 4285676 4286113 -139500342 + LOR1b LTR ERV1 1 461 0 203 293 0 24 chr12 4286950 4287032 -139499423 + CT-rich Low_complexity Low_complexity 1 80 0 224 0 0 61 chr12 4287309 4287342 -139499113 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 187 388 70 0 chr12 4288361 4288490 -139497965 + L2 LINE L2 2555 2692 -622 855 287 90 39 chr12 4288491 4288543 -139497912 - L1MEd LINE L1 -3103 3026 2978 991 182 41 45 chr12 4288543 4288591 -139497864 - MER20 DNA MER1_type 0 219 172 2685 32 0 3 chr12 4288591 4288901 -139497554 - AluY SINE Alu -2 309 1 991 182 41 45 chr12 4288901 4289072 -139497383 - MER20 DNA MER1_type -47 172 1 855 287 90 39 chr12 4289072 4289908 -139496547 - L1MEd LINE L1 -3151 2978 2093 395 301 60 66 chr12 4289910 4290213 -139496242 - L1MEd LINE L1 -4182 2128 1826 2166 106 6 41 chr12 4290213 4290533 -139495922 - AluSc SINE Alu 0 309 1 395 301 60 66 chr12 4290533 4290578 -139495877 - L1MEd LINE L1 -4484 1826 1782 1929 163 10 0 chr12 4290592 4290893 -139495562 - AluJo SINE Alu -8 304 1 749 295 91 28 chr12 4291038 4291832 -139494623 - L1MEd LINE L1 -824 1666 723 227 119 0 0 chr12 4291855 4291897 -139494558 - AluJb SINE Alu -2 300 259 1246 176 0 5 chr12 4291898 4292120 -139494335 - AluJb SINE Alu -91 221 1 720 317 67 70 chr12 4292200 4292605 -139493850 - L1MEd LINE L1 -5446 673 269 2462 53 0 3 chr12 4292605 4292906 -139493549 - AluY SINE Alu -11 300 1 720 317 67 70 chr12 4292906 4293169 -139493286 - L1MEd LINE L1 -5850 269 7 2269 93 0 0 chr12 4293268 4293569 -139492886 + AluSp SINE Alu 1 301 -12 248 250 83 0 chr12 4293944 4294004 -139492451 + L2 LINE L2 3228 3292 -21 1848 132 3 14 chr12 4294209 4294498 -139491957 - AluSx SINE Alu -26 286 1 197 225 202 79 chr12 4294691 4294754 -139491701 + L2 LINE L2 3173 3251 -21 2706 75 20 0 chr12 4294754 4295102 -139491353 - THE1A LTR MaLR 0 355 1 197 225 202 79 chr12 4295102 4295127 -139491328 + L2 LINE L2 3251 3272 0 306 125 0 0 chr12 4295302 4295350 -139491105 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 266 232 0 0 chr12 4295356 4295412 -139491043 - L2 LINE L2 0 3272 3217 2245 101 0 3 chr12 4295454 4295762 -139490693 + AluSg SINE Alu 1 307 -3 248 288 14 27 chr12 4295860 4295933 -139490522 - L2 LINE L2 0 3313 3242 201 182 0 0 chr12 4296054 4296087 -139490368 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 203 357 71 0 chr12 4297489 4297573 -139488882 + L2 LINE L2 3121 3210 -62 371 264 0 36 chr12 4298404 4298514 -139487941 + MIR3 SINE MIR 82 187 -21 * 391 208 52 42 chr12 4298511 4298607 -139487848 + L2 LINE L2 3176 3272 0 240 238 75 12 chr12 4298650 4298730 -139487725 + MIR SINE MIR 36 120 -88 * 386 186 35 23 chr12 4298725 4298811 -139487644 - MIR SINE MIR -87 121 35 776 264 40 9 chr12 4299461 4299672 -139486783 + MIR SINE MIR 39 255 -7 225 244 0 0 chr12 4299841 4299886 -139486569 - MIR3 SINE MIR -50 158 114 629 208 22 142 chr12 4299959 4300091 -139486364 + MIR SINE MIR 64 210 -52 234 0 0 0 chr12 4300091 4300117 -139486338 + (TA)n Simple_repeat Simple_repeat 2 27 0 204 40 0 0 chr12 4300122 4300147 -139486308 + (CA)n Simple_repeat Simple_repeat 2 26 0 629 208 22 142 chr12 4300147 4300163 -139486292 + MIR SINE MIR 214 230 -32 1521 177 52 4 chr12 4300163 4300434 -139486021 + AluJo SINE Alu 1 284 -28 629 208 22 142 chr12 4300434 4300504 -139485951 + MIR SINE MIR 230 262 0 234 288 136 8 chr12 4301441 4301566 -139484889 + L2 LINE L2 3168 3308 -5 498 280 71 6 chr12 4301726 4301894 -139484561 + MLT1J2 LTR MaLR 34 212 -238 479 285 103 12 chr12 4302099 4302264 -139484191 - MIR3 SINE MIR -1 207 28 189 195 24 24 chr12 4302856 4302897 -139483558 + L2 LINE L2 3020 3060 -212 848 259 28 9 chr12 4303100 4303312 -139483143 - MIR SINE MIR -46 216 1 2132 95 7 0 chr12 4303405 4303699 -139482756 + AluY SINE Alu 1 296 -15 197 306 32 0 chr12 4303906 4303968 -139482487 - L2 LINE L2 0 3313 3250 2060 110 3 3 chr12 4305660 4305952 -139480503 + AluSc SINE Alu 6 297 -12 2431 60 0 0 chr12 4306124 4306425 -139480030 - AluSc SINE Alu -8 301 1 1793 209 16 16 chr12 4307292 4307666 -139478789 + MLT1A2 LTR MaLR 1 374 0 367 236 9 28 chr12 4307839 4307945 -139478510 + L1MC5 LINE L1 7814 7917 -44 2037 99 41 0 chr12 4308112 4308404 -139478051 - AluSc SINE Alu -5 304 1 740 321 66 30 chr12 4308674 4309137 -139477318 - L2 LINE L2 -91 3222 2745 21 0 0 0 chr12 4309312 4309333 -139477122 + AT_rich Low_complexity Low_complexity 1 21 0 845 128 0 0 chr12 4309510 4309635 -139476820 + AluSg/x SINE Alu 176 300 -12 182 280 0 40 chr12 4310778 4310828 -139475627 - L2 LINE L2 0 3272 3225 653 233 121 9 chr12 4310893 4310973 -139475482 + MER58 DNA MER1_type 1 71 -2349 2240 88 0 0 chr12 4310973 4311270 -139475185 + AluSg1 SINE Alu 1 297 -12 653 233 121 9 chr12 4311270 4311493 -139474962 + MER58 DNA MER1_type 71 2420 0 629 287 12 52 chr12 4311670 4311921 -139474534 + MIR SINE MIR 1 241 -21 339 278 53 30 chr12 4312831 4312964 -139473491 + MIR3 SINE MIR 62 197 -11 2106 103 3 7 chr12 4314158 4314460 -139471995 + AluSg SINE Alu 1 301 -9 2115 97 0 3 chr12 4314711 4315001 -139471454 - AluSq SINE Alu -15 298 10 431 213 25 0 chr12 4315032 4315112 -139471343 + L2 LINE L2 3232 3313 0 431 344 42 14 chr12 4315259 4315474 -139470981 - LTR16A LTR ERVL -34 416 196 2572 40 0 0 chr12 4315792 4316095 -139470360 - AluY SINE Alu -8 303 1 2133 110 0 10 chr12 4316101 4316411 -139470044 - AluSc SINE Alu -2 307 1 263 281 45 56 chr12 4316442 4316531 -139469924 - MLT1K LTR MaLR -411 177 90 207 204 0 0 chr12 4317210 4317254 -139469201 + GA-rich Low_complexity Low_complexity 2 45 0 2219 56 0 28 chr12 4317504 4317837 -139468618 + AluY SINE Alu 1 325 0 218 219 0 0 chr12 4317897 4317938 -139468517 - MIR3 SINE MIR -49 159 119 3834 235 58 68 chr12 4317938 4319040 -139467415 + L1MEc LINE L1 18 1130 -5266 2020 125 3 0 chr12 4319040 4319337 -139467118 + AluSq SINE Alu 4 301 -12 3834 235 58 68 chr12 4319337 4319631 -139466824 + L1MEc LINE L1 1130 1425 -4971 2237 96 0 3 chr12 4319631 4319933 -139466522 + AluY SINE Alu 1 301 -10 3834 235 58 68 chr12 4319933 4319958 -139466497 + L1MEc LINE L1 1425 1449 -4947 1591 182 21 3 chr12 4319958 4320244 -139466211 + AluJo SINE Alu 1 291 -21 3834 235 58 68 chr12 4320244 4320324 -139466131 + L1MEc LINE L1 1449 1506 -4890 717 89 0 0 chr12 4320460 4320550 -139465905 - AluY SINE Alu -220 91 2 274 222 14 14 chr12 4320551 4320623 -139465832 + L1MEc LINE L1 1510 1581 -4634 1930 150 0 3 chr12 4320623 4320936 -139465519 - AluSx SINE Alu 0 312 1 853 105 48 0 chr12 4320942 4321066 -139465389 + AluSg/x SINE Alu 162 291 -19 1789 245 103 40 chr12 4321067 4321602 -139464853 + L1MEc LINE L1 1651 2151 -4064 1939 125 3 3 chr12 4321602 4321897 -139464558 + AluSc SINE Alu 1 295 -14 1789 245 103 40 chr12 4321897 4322527 -139463928 + L1MEc LINE L1 2151 2889 -3326 614 206 103 122 chr12 4322506 4322826 -139463629 + L1M4 LINE L1 4871 5184 -1031 * 32 43 0 0 chr12 4323135 4323181 -139463274 + AT_rich Low_complexity Low_complexity 1 46 0 1587 108 0 0 chr12 4323201 4323424 -139463031 + L1MA4 LINE L1 5676 5898 -402 240 307 148 34 chr12 4323467 4323555 -139462900 + L2 LINE L2 3161 3258 -14 198 71 0 0 chr12 4323556 4323584 -139462871 + (GA)n Simple_repeat Simple_repeat 2 29 0 246 264 99 25 chr12 4324703 4324824 -139461631 - L3b LINE CR1 -161 1422 1293 545 217 159 13 chr12 4324928 4325085 -139461370 + MER5A DNA MER1_type 10 189 0 196 29 29 29 chr12 4326716 4326750 -139459705 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 209 290 14 14 chr12 4327116 4327185 -139459270 - MIR3 SINE MIR -129 79 11 320 228 205 16 chr12 4377876 4378003 -139408452 + MIR SINE MIR 56 206 -56 3303 64 0 7 chr12 4378018 4378469 -139407986 + LTR7 LTR ERV1 1 448 -2 19935 87 25 16 chr12 4378471 4381441 -139405014 + HERVH LTR ERV1 1 2995 -4718 882 129 27 0 chr12 4381420 4381567 -139404888 + HERVH LTR ERV1 3140 3290 -4423 * 944 141 0 0 chr12 4381569 4381711 -139404744 + HERVH LTR ERV1 3503 3644 -4069 * 2535 163 0 0 chr12 4381710 4382120 -139404335 + HERVH LTR ERV1 4740 5149 -2564 1298 125 18 36 chr12 4382121 4382345 -139404110 + HERVH LTR ERV1 5600 5819 -1894 * 2469 76 45 13 chr12 4382343 4382723 -139403732 + HERVH LTR ERV1 7322 7713 0 3317 56 5 7 chr12 4382723 4383172 -139403283 + LTR7 LTR ERV1 1 448 -2 2236 102 3 0 chr12 4383217 4383537 -139402918 + AluSp SINE Alu 1 321 0 227 318 61 38 chr12 4383545 4383677 -139402778 + L2 LINE L2 3172 3306 -7 2320 99 3 0 chr12 4383896 4384198 -139402257 + AluSp SINE Alu 1 303 -10 223 305 39 62 chr12 4385682 4385811 -139400644 - MIR SINE MIR -68 140 26 244 286 71 54 chr12 4386146 4386258 -139400197 + L2 LINE L2 3191 3304 -9 * 334 236 47 38 chr12 4386235 4386341 -139400114 - L2 LINE L2 -8 3264 3158 404 298 146 20 chr12 4387633 4387989 -139398466 + L2 LINE L2 2543 2943 -371 399 341 32 0 chr12 4388094 4388220 -139398235 + L2 LINE L2 3141 3270 -2 219 36 0 0 chr12 4388511 4388539 -139397916 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2202 87 7 0 chr12 4388539 4388814 -139397641 - AluSp SINE Alu -32 281 5 2163 98 7 23 chr12 4388902 4389209 -139397246 + AluJb SINE Alu 1 302 -10 208 286 0 16 chr12 4389211 4389274 -139397181 + (TA)n Simple_repeat Simple_repeat 2 63 0 213 229 0 0 chr12 4389455 4389503 -139396952 + L2 LINE L2 3265 3312 -1 292 302 28 18 chr12 4389646 4389765 -139396690 + MIR SINE MIR 36 164 -63 325 285 146 73 chr12 4389787 4390075 -139396380 - L2 LINE L2 -73 3199 2891 215 344 0 0 chr12 4390147 4390211 -139396244 - L2 LINE L2 -581 2733 2670 196 284 72 93 chr12 4390260 4390454 -139396001 - MIR3 SINE MIR -16 192 3 35 0 0 0 chr12 4390730 4390765 -139395690 + GC_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr12 4390783 4390818 -139395637 + GC_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr12 4390885 4390914 -139395541 + GC_rich Low_complexity Low_complexity 1 29 0 198 258 32 32 chr12 4391411 4391473 -139394982 + MIR3 SINE MIR 101 162 -46 * 446 210 84 56 chr12 4391464 4391607 -139394848 + MIR3 SINE MIR 16 162 -46 2477 84 0 3 chr12 4392015 4392324 -139394131 + AluSq SINE Alu 1 308 -5 465 216 45 52 chr12 4392522 4392656 -139393799 + MIR3 SINE MIR 66 198 -10 493 232 146 43 chr12 4393673 4393906 -139392549 - MER112 DNA MER1_type -3 257 1 420 340 54 17 chr12 4394385 4394626 -139391829 - L3b LINE CR1 -90 1493 1244 238 321 126 46 chr12 4395111 4395251 -139391204 - MIR3 SINE MIR -67 141 6 2223 68 32 36 chr12 4395597 4395906 -139390549 - AluY SINE Alu -3 308 1 1020 275 63 25 chr12 4396265 4396629 -139389826 - L3 LINE CR1 -4 1573 1196 333 320 116 6 chr12 4396707 4396888 -139389567 - MIR SINE MIR -16 246 46 2575 38 0 0 chr12 4398545 4398837 -139387618 + AluY SINE Alu 13 304 -7 1776 170 0 3 chr12 4399168 4399451 -139387004 + AluJb SINE Alu 1 282 -30 472 282 192 13 chr12 4399992 4400148 -139386307 + MIR3 SINE MIR 8 191 -17 234 321 24 12 chr12 4401455 4401539 -139384916 - MIR3 SINE MIR -9 199 115 241 258 62 52 chr12 4401614 4401711 -139384744 + MIR SINE MIR 21 118 -144 1980 148 6 3 chr12 4402061 4402372 -139384083 + AluJo SINE Alu 1 312 0 876 276 65 50 chr12 4402457 4402859 -139383596 - L2 LINE L2 0 3313 2906 287 292 75 33 chr12 4403286 4403406 -139383049 + L2 LINE L2 3177 3301 -12 186 254 111 0 chr12 4403644 4403707 -139382748 + MIR SINE MIR 66 135 -127 290 337 21 0 chr12 4405305 4405400 -139381055 - MIR3 SINE MIR -17 191 95 214 274 0 0 chr12 4406526 4406588 -139379867 + T-rich Low_complexity Low_complexity 1 62 0 431 254 105 72 chr12 4407327 4407420 -139379035 + MIR SINE MIR 34 122 -140 2162 115 0 0 chr12 4407420 4407708 -139378747 - AluY SINE Alu -18 293 6 431 254 105 72 chr12 4407708 4407823 -139378632 + MIR SINE MIR 122 249 -13 389 238 85 0 chr12 4407840 4407961 -139378494 + MIR SINE MIR 28 167 -61 279 288 85 65 chr12 4408046 4408199 -139378256 + MIR3 SINE MIR 48 203 -5 639 245 89 51 chr12 4408517 4408754 -139377701 + MIR SINE MIR 17 262 0 273 273 13 13 chr12 4408905 4408982 -139377473 + MER5B DNA MER1_type 93 169 -9 349 324 14 42 chr12 4409064 4409206 -139377249 + MIR3 SINE MIR 65 202 -6 597 277 13 56 chr12 4409503 4409774 -139376681 - MIR SINE MIR 0 262 3 1209 104 245 60 chr12 4410054 4410323 -139376132 + MER33 DNA MER1_type 1 319 -5 752 201 123 6 chr12 4410328 4410507 -139375948 + MIR SINE MIR 32 231 -31 187 207 9 180 chr12 4410749 4410860 -139375595 + L2 LINE L2 3168 3259 -13 500 277 162 7 chr12 4414056 4414204 -139372251 + MER5B DNA MER1_type 6 176 -2 252 0 0 0 chr12 4416978 4417006 -139369449 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 2822 153 95 9 chr12 4417229 4417764 -139368691 - L1MD3 LINE L1 -11 7984 7404 527 204 0 19 chr12 4417764 4417867 -139368588 - MLT1F1 LTR MaLR -442 125 25 267 178 0 82 chr12 4417868 4417941 -139368514 - L1MD3 LINE L1 -895 7100 7034 1066 185 0 5 chr12 4417944 4418128 -139368327 - MLT1C LTR MaLR -1 466 284 * 1261 201 73 34 chr12 4418123 4418451 -139368004 - MLT1C LTR MaLR -120 347 7 3271 196 59 60 chr12 4418461 4418596 -139367859 - L1MD3 LINE L1 -18 6148 6869 198 0 0 0 chr12 4418596 4418618 -139367837 + (TC)n Simple_repeat Simple_repeat 1 22 0 3271 196 59 60 chr12 4418618 4419459 -139366996 - L1MD3 LINE L1 704 6870 6030 295 298 40 40 chr12 4419991 4420142 -139366313 + L2 LINE L2 2966 3116 -197 296 292 0 0 chr12 4420177 4420249 -139366206 + L2 LINE L2 3223 3294 -19 231 192 19 0 chr12 4420586 4420638 -139365817 + HAL1 LINE L1 2269 2321 -186 40 37 0 0 chr12 4420821 4420875 -139365580 + AT_rich Low_complexity Low_complexity 1 54 0 334 243 64 21 chr12 4420913 4421053 -139365402 - L1MC5 LINE L1 -99 7862 7717 318 273 0 0 chr12 4421204 4421281 -139365174 - L1MC4 LINE L1 -610 7432 7356 1245 150 134 8 chr12 4421423 4421669 -139364786 - Tigger3(Golem) DNA MER2_type -1 3028 2752 919 142 239 15 chr12 4421673 4421878 -139364577 + AluSg1 SINE Alu 49 299 -10 315 255 49 10 chr12 4421947 4422049 -139364406 - L1MC5 LINE L1 -895 7066 6961 3409 201 67 27 chr12 4422101 4422907 -139363548 - L1ME2 LINE L1 -9 6155 5318 * 9631 162 45 18 chr12 4422902 4425593 -139360862 - L1MC1 LINE L1 -1 6612 3995 1796 171 0 3 chr12 4425593 4425879 -139360576 - AluJb SINE Alu -27 285 1 9631 162 45 18 chr12 4425879 4429463 -139356992 - L1MC1 LINE L1 -2618 3995 5 411 213 130 0 chr12 4429443 4429551 -139356904 - L1ME2 LINE L1 -810 5336 5215 * 231 146 0 134 chr12 4429550 4429632 -139356823 - L1MC5 LINE L1 -1008 6953 6883 * 256 274 65 114 chr12 4429845 4429886 -139356569 + MARNA DNA Mariner 26 67 -519 2269 91 0 13 chr12 4429886 4430194 -139356261 - AluY SINE Alu -7 304 1 256 274 65 114 chr12 4430194 4430353 -139356102 + MARNA DNA Mariner 67 216 -370 464 298 59 43 chr12 4430375 4430630 -139355825 - MIR SINE MIR -2 260 2 249 304 51 0 chr12 4430730 4430809 -139355646 - MARNA DNA Mariner -416 170 88 2212 203 53 69 chr12 4431098 4431423 -139355032 - L1MD2 LINE L1 0 6753 6441 1892 144 7 17 chr12 4431423 4431588 -139354867 - AluJo SINE Alu -13 299 137 1957 140 10 0 chr12 4431588 4431880 -139354575 - AluSx SINE Alu -17 295 1 1892 144 7 17 chr12 4431880 4432012 -139354443 - AluJo SINE Alu -175 137 5 2212 203 53 69 chr12 4432012 4432312 -139354143 - L1MD2 LINE L1 -312 6441 6138 1486 164 19 22 chr12 4432372 4432641 -139353814 - L1MD2 LINE L1 -502 6134 5867 2057 102 19 56 chr12 4432644 4432967 -139353488 - AluY SINE Alu 0 311 1 312 194 26 17 chr12 4432982 4433068 -139353387 - L1MD2 LINE L1 0 7769 7685 1461 184 40 114 chr12 4433068 4433238 -139353217 + MLT1A2 LTR MaLR 1 182 -192 285 29 0 0 chr12 4433238 4433272 -139353183 + (TC)n Simple_repeat Simple_repeat 1 34 0 1461 184 40 114 chr12 4433272 4433316 -139353139 + MLT1A2 LTR MaLR 182 228 -146 366 23 0 0 chr12 4433316 4433359 -139353096 + (TC)n Simple_repeat Simple_repeat 1 43 0 1461 184 40 114 chr12 4433359 4433545 -139352910 + MLT1A2 LTR MaLR 228 372 -2 312 194 26 17 chr12 4433545 4434172 -139352283 - L1MD2 LINE L1 -84 7685 6243 * 6910 220 53 21 chr12 4434170 4435912 -139350543 - L1MD2 LINE L1 -743 5797 4114 8630 129 10 6 chr12 4435912 4436453 -139350002 + L1PA10 LINE L1 4102 4639 -1529 1948 131 13 35 chr12 4436453 4436744 -139349711 + AluSx SINE Alu 1 286 -26 333 0 0 0 chr12 4436744 4436781 -139349674 + (CA)n Simple_repeat Simple_repeat 2 38 0 1948 131 13 35 chr12 4436781 4436801 -139349654 + AluSx SINE Alu 286 305 -7 8630 129 10 6 chr12 4436801 4438324 -139348131 + L1PA10 LINE L1 4639 6164 -4 6910 220 53 21 chr12 4438324 4438703 -139347752 - L1MD2 LINE L1 -2426 4114 3683 2413 192 19 24 chr12 4438704 4439168 -139347287 - L1MD2 LINE L1 -6061 479 18 706 288 62 64 chr12 4440480 4440935 -139345520 - MLT1J LTR MaLR -57 454 1 272 246 146 31 chr12 4441418 4441548 -139344907 - MIR SINE MIR -62 146 28 1212 190 4 4 chr12 4441599 4441825 -139344630 - AluJb SINE Alu -6 306 81 1797 151 10 7 chr12 4441826 4442117 -139344338 - AluJo SINE Alu -20 292 1 294 240 163 47 chr12 4442162 4442291 -139344164 - MIR SINE MIR -71 191 48 272 301 136 11 chr12 4443588 4443764 -139342691 - MIR SINE MIR -27 235 38 189 261 0 0 chr12 4444832 4444878 -139341577 - L3 LINE CR1 -9 1568 1523 233 298 39 19 chr12 4445056 4445160 -139341295 - MIR SINE MIR -98 164 59 33 0 0 0 chr12 4446549 4446582 -139339873 + AT_rich Low_complexity Low_complexity 1 33 0 693 100 0 0 chr12 4446674 4446774 -139339681 + AluY SINE Alu 208 307 -4 2051 167 30 3 chr12 4446879 4447245 -139339210 + L1MB5 LINE L1 5799 6174 0 272 75 57 75 chr12 4447262 4447315 -139339140 + L1MC1 LINE L1 6281 6332 -1 236 301 135 12 chr12 4447508 4447612 -139338843 + L2 LINE L2 3071 3161 -111 2391 104 3 0 chr12 4447612 4447920 -139338535 - AluSp SINE Alu -4 309 1 236 301 135 12 chr12 4447920 4447978 -139338477 + L2 LINE L2 3161 3253 -19 240 187 13 80 chr12 4447988 4448063 -139338392 + MIR SINE MIR 56 125 -83 252 279 139 0 chr12 4448457 4448586 -139337869 - MIR SINE MIR -62 200 54 212 365 69 14 chr12 4448612 4448757 -139337698 + L3b LINE CR1 1406 1558 -25 342 276 270 6 chr12 4449361 4449524 -139336931 - MIR SINE MIR -42 220 15 1096 236 105 57 chr12 4449622 4450306 -139336149 - L1MC5 LINE L1 -36 7925 7260 331 293 30 0 chr12 4450991 4451090 -139335365 - MIR3 SINE MIR -25 183 82 1048 154 0 0 chr12 4451092 4451254 -139335201 + FRAM SINE Alu 2 163 -13 194 310 35 78 chr12 4451746 4451862 -139334593 + L2 LINE L2 3203 3313 0 388 247 69 70 chr12 4452002 4452251 -139334204 - Charlie2a DNA MER1_type -32 2830 2582 1879 176 3 3 chr12 4452251 4452558 -139333897 - AluJb SINE Alu -5 307 1 388 247 69 70 chr12 4452558 4452807 -139333648 - Charlie2a DNA MER1_type -280 2582 2274 7260 220 56 69 chr12 4452814 4454715 -139331740 + L1MD1 LINE L1 2713 4638 -1591 1180 190 138 30 chr12 4454715 4454984 -139331471 + AluJo SINE Alu 5 302 0 7260 220 56 69 chr12 4454984 4454995 -139331460 + L1MD1 LINE L1 4638 4648 -1581 2575 65 0 0 chr12 4454995 4455302 -139331153 + AluY SINE Alu 1 307 -4 7260 220 56 69 chr12 4455302 4455659 -139330796 + L1MD1 LINE L1 4648 5008 -1221 381 43 0 0 chr12 4455659 4455706 -139330749 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 2256 89 3 0 chr12 4455706 4455988 -139330467 - AluSp SINE Alu -30 283 1 7260 220 56 69 chr12 4455988 4456167 -139330288 + L1MD1 LINE L1 5007 5187 -1042 2244 116 0 3 chr12 4456167 4456477 -139329978 + AluSc SINE Alu 1 309 0 7260 220 56 69 chr12 4456477 4456845 -139329610 + L1MD1 LINE L1 5187 5486 -743 4959 196 25 63 chr12 4459264 4460500 -139325955 + L1MC2 LINE L1 4084 5365 -979 2111 80 29 0 chr12 4460500 4460798 -139325657 + AluY SINE Alu 1 306 0 4959 196 25 63 chr12 4460798 4461057 -139325398 + L1MC2 LINE L1 5365 5632 -712 793 142 0 8 chr12 4461057 4461191 -139325264 - L1PB2 LINE L1 -4 6147 6015 4959 196 25 63 chr12 4461191 4462039 -139324416 + L1MC2 LINE L1 5632 6343 -1 2205 86 0 4 chr12 4462064 4462342 -139324113 - AluSg SINE Alu -20 290 14 2751 225 60 3 chr12 4462363 4463034 -139323421 + L1MC3 LINE L1 7075 7783 -2 3223 172 17 32 chr12 4463043 4463676 -139322779 + L1MD1 LINE L1 5475 6098 -144 250 204 0 0 chr12 4463676 4463725 -139322730 + AluJ/monomer SINE Alu 257 305 -3 1961 73 4 4 chr12 4463739 4463987 -139322468 - AluSp SINE Alu -17 296 49 2853 199 56 38 chr12 4463989 4464013 -139322442 - Charlie2a DNA MER1_type -610 2252 2230 2276 75 0 0 chr12 4464013 4464319 -139322136 - AluY SINE Alu 0 306 1 2853 199 56 38 chr12 4464319 4465023 -139321432 - Charlie2a DNA MER1_type -632 2230 1506 2292 118 0 0 chr12 4465023 4465327 -139321128 - AluSc SINE Alu -5 304 1 2853 199 56 38 chr12 4465327 4465364 -139321091 - Charlie2a DNA MER1_type -1356 1506 1471 410 53 18 0 chr12 4465420 4465477 -139320978 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1570 266 116 38 chr12 4465498 4466110 -139320345 - Charlie2b DNA MER1_type -2117 665 6 183 80 0 0 chr12 4467390 4467415 -139319040 + (A)n Simple_repeat Simple_repeat 1 25 0 2070 135 0 3 chr12 4467420 4467717 -139318738 + AluJo SINE Alu 3 298 -14 388 311 62 6 chr12 4468275 4468436 -139318019 - MIR SINE MIR -1 261 92 254 308 158 0 chr12 4468479 4468612 -139317843 + L3 LINE CR1 1404 1557 -20 209 256 0 13 chr12 4468701 4468779 -139317676 + GA-rich Low_complexity Low_complexity 3 79 0 27 29 0 0 chr12 4468794 4468828 -139317627 + AT_rich Low_complexity Low_complexity 1 34 0 669 179 0 83 chr12 4468986 4469131 -139317324 - FLAM_C SINE Alu 0 133 1 200 263 163 67 chr12 4469728 4469820 -139316635 - L2 LINE L2 -238 3034 2952 1857 140 3 42 chr12 4469820 4470127 -139316328 + AluJo SINE Alu 2 296 -16 200 263 163 67 chr12 4470127 4470243 -139316212 - L2 LINE L2 -320 2952 2806 1653 163 88 0 chr12 4471404 4471735 -139314720 + MER46B DNA MER2_type 1 235 -1 531 247 89 32 chr12 4471963 4472210 -139314245 + L2 LINE L2 3050 3310 -3 298 310 70 10 chr12 4472232 4472332 -139314123 + L2 LINE L2 3116 3221 -51 309 51 0 0 chr12 4472355 4472394 -139314061 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 219 274 0 0 chr12 4472424 4472475 -139313980 - L2 LINE L2 -12 3260 3210 238 289 20 94 chr12 4473040 4473189 -139313266 - MIR3 SINE MIR -3 205 68 419 234 52 16 chr12 4473411 4473556 -139312899 + L1ME3 LINE L1 5987 6132 -38 1236 35 0 0 chr12 4473646 4473787 -139312668 + AluY SINE Alu 165 305 -6 2574 62 0 3 chr12 4473805 4474111 -139312344 + AluSc SINE Alu 1 305 -4 254 133 44 0 chr12 4474115 4474160 -139312295 - MIR SINE MIR -96 166 120 869 106 50 7 chr12 4474307 4474448 -139312007 - L1MB3 LINE L1 -3 6180 6034 331 299 0 0 chr12 4474450 4474547 -139311908 + MIR SINE MIR 49 145 -117 3290 138 2 8 chr12 4474575 4475055 -139311400 + MER1A DNA MER1_type 53 529 0 328 364 29 0 chr12 4475752 4475892 -139310563 + MIR SINE MIR 49 192 -70 233 273 39 26 chr12 4477024 4477101 -139309354 - MIR SINE MIR -98 164 87 189 0 0 0 chr12 4477785 4477806 -139308649 + (TG)n Simple_repeat Simple_repeat 1 21 0 249 119 0 0 chr12 4478004 4478046 -139308409 + (TC)n Simple_repeat Simple_repeat 1 42 0 225 128 0 0 chr12 4478045 4478092 -139308363 + (CA)n Simple_repeat Simple_repeat 1 47 0 * 256 193 35 0 chr12 4478476 4478533 -139307922 - L3 LINE CR1 -119 1458 1400 262 167 0 0 chr12 4479087 4479135 -139307320 - MIR SINE MIR -108 154 107 571 298 128 5 chr12 4480391 4480609 -139305846 - MIR SINE MIR -1 261 17 209 222 0 19 chr12 4480701 4480755 -139305700 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 425 295 47 37 chr12 4481481 4481671 -139304784 + MIR SINE MIR 51 242 -20 2459 79 0 0 chr12 4481805 4482109 -139304346 - AluSq SINE Alu -5 308 5 2490 51 3 26 chr12 4482121 4482432 -139304023 - AluY SINE Alu -7 304 1 198 0 0 0 chr12 4482598 4482620 -139303835 + (CA)n Simple_repeat Simple_repeat 1 22 0 338 275 84 28 chr12 4483455 4483597 -139302858 - MIR SINE MIR -93 169 20 2464 48 10 0 chr12 4483762 4484054 -139302401 - AluSg SINE Alu -15 295 1 2268 107 0 0 chr12 4484478 4484777 -139301678 + AluSq SINE Alu 1 299 -14 2924 207 12 14 chr12 4484806 4485518 -139300937 - L1M LINE L1 -737 5429 4720 4083 289 66 52 chr12 4485522 4485814 -139300641 - L1ME3A LINE L1 -232 6174 5888 2585 47 0 3 chr12 4485814 4486111 -139300344 + AluY SINE Alu 1 296 -15 4083 289 66 52 chr12 4486111 4487455 -139299000 - L1ME3A LINE L1 -518 5888 4564 1886 179 0 0 chr12 4487455 4487751 -139298704 - AluJo SINE Alu -16 296 1 4083 289 66 52 chr12 4487751 4487972 -139298483 - L1ME3A LINE L1 -1842 4564 4348 234 62 0 0 chr12 4487972 4488004 -139298451 + (TG)n Simple_repeat Simple_repeat 1 32 0 4083 289 66 52 chr12 4488004 4488522 -139297933 - L1ME3A LINE L1 -2058 4348 3839 2239 103 3 0 chr12 4488522 4488838 -139297617 - AluSp SINE Alu 0 313 1 4083 289 66 52 chr12 4488838 4489054 -139297401 - L1ME3A LINE L1 -2567 3839 3627 1939 205 55 26 chr12 4489054 4489417 -139297038 - MLT1C LTR MaLR 0 467 116 233 0 62 0 chr12 4489417 4489449 -139297006 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2111 111 0 11 chr12 4489452 4489732 -139296723 - AluSx SINE Alu -31 281 5 1939 205 55 26 chr12 4489732 4489818 -139296637 - MLT1C LTR MaLR -352 115 1 4083 289 66 52 chr12 4489818 4490827 -139295628 - L1ME3A LINE L1 -2779 3627 2518 1565 187 33 0 chr12 4490827 4491127 -139295328 - AluJb SINE Alu -2 310 1 4083 289 66 52 chr12 4491127 4491176 -139295279 - L1ME3A LINE L1 -3888 2518 2471 241 205 60 24 chr12 4491260 4491343 -139295112 - L1ME3A LINE L1 -3967 2417 2332 323 295 44 6 chr12 4491620 4491823 -139294632 - L1M4c LINE L1 -4444 1938 1620 683 199 29 15 chr12 4491835 4491971 -139294484 - LTR40a LTR ERVL -379 140 3 595 230 23 40 chr12 4492722 4492896 -139293559 - MER5A DNA MER1_type -5 184 14 446 320 11 17 chr12 4494809 4494990 -139291465 - MIR3 SINE MIR -10 198 19 2247 75 3 3 chr12 4495005 4495318 -139291137 - AluY SINE Alu 0 313 1 183 80 0 0 chr12 4495599 4495624 -139290831 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 293 68 23 0 chr12 4495868 4495912 -139290543 + (TG)n Simple_repeat Simple_repeat 2 46 0 214 296 71 31 chr12 4496661 4496759 -139289696 - MIR SINE MIR -113 149 48 1805 131 78 11 chr12 4497289 4497571 -139288884 + AluJb SINE Alu 1 301 -11 7520 48 0 0 chr12 4497866 4498767 -139287688 - L1PA5 LINE L1 0 6154 5254 180 324 96 7 chr12 4498788 4498924 -139287531 + L3 LINE CR1 1418 1565 -12 219 238 88 62 chr12 4499230 4499310 -139287145 + L2 LINE L2 3214 3295 -18 1476 194 3 31 chr12 4499320 4499609 -139286846 + AluJo SINE Alu 1 281 -31 325 239 37 30 chr12 4499922 4500056 -139286399 + CT-rich Low_complexity Low_complexity 2 136 0 236 324 120 9 chr12 4500738 4500846 -139285609 - L3b LINE CR1 -27 1556 1437 328 235 0 0 chr12 4501085 4501153 -139285302 + MIR SINE MIR 194 261 -1 419 250 45 30 chr12 4501415 4501547 -139284908 + MER94 DNA DNA 1 134 0 1779 169 3 3 chr12 4501625 4501909 -139284546 - AluJb SINE Alu -14 298 15 194 341 48 16 chr12 4501990 4502116 -139284339 + MER5A DNA MER1_type 33 162 -27 187 246 77 15 chr12 4502227 4502292 -139284163 - MIR SINE MIR -93 115 47 2263 109 3 3 chr12 4502857 4503169 -139283286 + AluSx SINE Alu 1 312 0 261 194 0 16 chr12 4503467 4503529 -139282926 - MIR SINE MIR -139 123 63 263 294 33 11 chr12 4503715 4503807 -139282648 - MIR3 SINE MIR -4 204 111 1169 238 188 22 chr12 4503835 4504372 -139282083 + Charlie2b DNA MER1_type 44 669 -2113 1043 235 128 18 chr12 4504458 4504678 -139281777 + L2 LINE L2 597 791 -2523 2151 91 24 7 chr12 4504678 4504965 -139281490 - AluSg SINE Alu -18 292 1 1043 235 128 18 chr12 4504965 4505190 -139281265 + L2 LINE L2 791 1091 -2223 353 294 125 0 chr12 4506100 4506260 -139280195 + MIR SINE MIR 49 228 -34 203 182 81 61 chr12 4506403 4506502 -139279953 + MIR SINE MIR 42 142 -66 267 282 166 30 chr12 4506894 4507058 -139279397 + MIR SINE MIR 18 196 -62 417 286 66 36 chr12 4507182 4507378 -139279077 - MIR SINE MIR -1 261 60 686 161 161 21 chr12 4507547 4507690 -139278765 - FRAM SINE Alu -12 164 2 202 344 22 0 chr12 4507927 4508017 -139278438 - MIR3 SINE MIR -16 192 101 2402 39 7 7 chr12 4508864 4509197 -139277258 - AluY SINE Alu 0 333 1 6606 84 14 2 chr12 4509204 4509872 -139276583 - L1PA14 LINE L1 0 6161 5478 2352 83 7 10 chr12 4509872 4510174 -139276281 - AluSp SINE Alu -12 301 1 6606 84 14 2 chr12 4510174 4510402 -139276053 - L1PA14 LINE L1 -683 5478 5254 2367 91 0 3 chr12 4510635 4510932 -139275523 + AluSq SINE Alu 1 296 -17 401 241 9 0 chr12 4510942 4511054 -139275401 + CT-rich Low_complexity Low_complexity 3 115 0 240 257 27 14 chr12 4511802 4511876 -139274579 + L1ME LINE L1 5845 5919 -202 2242 112 0 0 chr12 4512354 4512657 -139273798 - AluSx SINE Alu -9 303 1 268 214 36 116 chr12 4513366 4513478 -139272977 + MIR SINE MIR 84 186 -76 5234 158 56 27 chr12 4513478 4513530 -139272925 + L1MC2 LINE L1 5293 5342 -1002 946 107 15 0 chr12 4513530 4513661 -139272794 + FLAM_C SINE Alu 1 133 0 5234 158 56 27 chr12 4513661 4514021 -139272434 + L1MC2 LINE L1 5342 5690 -654 1974 123 18 0 chr12 4514021 4514325 -139272130 - AluSx SINE Alu 0 309 1 5234 158 56 27 chr12 4514325 4514932 -139271523 + L1MC2 LINE L1 5690 6343 -1 274 186 14 86 chr12 4514944 4515014 -139271441 + MIR3 SINE MIR 91 155 -53 325 157 0 0 chr12 4515021 4515072 -139271383 - MER3 DNA MER1_type -127 82 32 2264 102 0 10 chr12 4515096 4515400 -139271055 - AluSc SINE Alu -8 301 1 2456 81 0 0 chr12 4517178 4517475 -139268980 + AluSp SINE Alu 1 297 -16 2023 117 31 3 chr12 4517487 4517778 -139268677 + AluSq SINE Alu 1 299 -14 207 0 0 0 chr12 4517916 4517939 -139268516 + (T)n Simple_repeat Simple_repeat 1 23 0 924 143 75 7 chr12 4518567 4518714 -139267741 - FRAM SINE Alu -19 157 1 1003 199 103 18 chr12 4518714 4518943 -139267512 + L1ME3A LINE L1 5863 6122 -48 2326 107 0 3 chr12 4518943 4519253 -139267202 + AluSc SINE Alu 1 309 0 1003 199 103 18 chr12 4519253 4519304 -139267151 + L1ME3A LINE L1 6122 6167 -3 723 136 8 8 chr12 4519310 4519428 -139267027 + FLAM_C SINE Alu 17 134 -9 1207 224 98 67 chr12 4519660 4520110 -139266345 + MLT1C LTR MaLR 1 464 -3 2254 102 3 0 chr12 4520642 4520976 -139265479 - AluSx SINE Alu 0 335 1 1021 221 78 11 chr12 4521438 4521719 -139264736 + Charlie2b DNA MER1_type 370 669 -2113 2392 177 174 47 chr12 4521753 4522066 -139264389 + Charlie2a DNA MER1_type 1472 1744 -1118 2327 89 3 0 chr12 4522066 4522358 -139264097 - AluSg SINE Alu -17 293 1 2392 177 174 47 chr12 4522358 4522662 -139263793 + Charlie2a DNA MER1_type 1744 2008 -854 2586 47 3 0 chr12 4522662 4522961 -139263494 + AluY SINE Alu 1 300 -11 2392 177 174 47 chr12 4522961 4523171 -139263284 + Charlie2a DNA MER1_type 2008 2190 -672 1593 126 29 8 chr12 4523171 4523410 -139263045 - AluJo SINE Alu -9 303 60 2392 177 174 47 chr12 4523410 4523682 -139262773 + Charlie2a DNA MER1_type 2190 2778 -84 204 40 0 0 chr12 4524013 4524038 -139262417 + (T)n Simple_repeat Simple_repeat 1 25 0 207 270 190 35 chr12 4525593 4525767 -139260688 + L2 LINE L2 2984 3184 -129 2187 125 0 0 chr12 4526012 4526307 -139260148 - AluSx SINE Alu -17 295 1 311 189 42 11 chr12 4526314 4526409 -139260046 + (TA)n Simple_repeat Simple_repeat 1 98 0 190 343 67 0 chr12 4526425 4526530 -139259925 + L2 LINE L2 3136 3247 -25 404 282 0 9 chr12 4526755 4526865 -139259590 - L1M4 LINE L1 -3575 2571 2463 240 294 42 25 chr12 4527535 4527654 -139258801 - L2 LINE L2 -210 3062 2942 705 227 167 32 chr12 4527707 4527958 -139258497 - Charlie8 DNA MER1_type -2132 285 1 1367 330 104 28 chr12 4528065 4528561 -139257894 - L2 LINE L2 -556 2758 2301 2137 139 0 3 chr12 4528561 4528863 -139257592 + AluSx SINE Alu 1 301 -11 1367 330 104 28 chr12 4528863 4529511 -139256944 - L2 LINE L2 -1013 2301 1527 223 241 20 0 chr12 4529818 4529883 -139256572 + MIR SINE MIR 17 81 -133 1862 123 0 7 chr12 4529939 4530208 -139256247 + AluJb SINE Alu 39 305 -7 2334 136 8 0 chr12 4531042 4531390 -139255065 - L1PB4 LINE L1 -13 6143 5790 270 0 0 0 chr12 4531390 4531420 -139255035 + (TG)n Simple_repeat Simple_repeat 2 31 0 2334 136 8 0 chr12 4531420 4531438 -139255017 - L1PB4 LINE L1 -366 5790 5774 43 88 0 0 chr12 4531445 4531558 -139254897 + AT_rich Low_complexity Low_complexity 1 113 0 24 32 0 0 chr12 4531613 4531644 -139254811 + AT_rich Low_complexity Low_complexity 1 31 0 477 88 32 40 chr12 4531725 4531850 -139254605 + (TA)n Simple_repeat Simple_repeat 1 124 0 252 269 14 21 chr12 4531853 4531994 -139254461 + (TTA)n Simple_repeat Simple_repeat 3 142 0 348 133 0 0 chr12 4532025 4532085 -139254370 + (TA)n Simple_repeat Simple_repeat 1 60 0 713 145 17 29 chr12 4532098 4532249 -139254206 - L1PB4 LINE L1 -375 5781 5645 1579 243 207 16 chr12 4532519 4533012 -139253443 - MLT1E LTR MaLR -6 587 1 390 276 92 15 chr12 4533135 4533331 -139253124 - MIR SINE MIR -28 234 24 418 273 0 18 chr12 4533477 4533587 -139252868 - MLT1J LTR MaLR -85 426 319 2228 172 46 0 chr12 4533838 4534251 -139252204 + MSTB1 LTR MaLR 1 432 0 405 260 87 119 chr12 4534301 4534401 -139252054 - HAL1b LINE L1 -461 887 785 2364 88 0 7 chr12 4534401 4534697 -139251758 - AluSp SINE Alu -19 294 1 405 260 87 119 chr12 4534697 4534834 -139251621 - HAL1b LINE L1 -563 785 645 336 192 26 0 chr12 4534834 4534912 -139251543 + MER116 DNA Mariner 1 80 0 405 260 87 119 chr12 4534912 4535319 -139251136 - HAL1b LINE L1 -703 645 263 2155 80 0 0 chr12 4535335 4535625 -139250830 + AluSg1 SINE Alu 18 307 0 349 43 43 29 chr12 4535828 4535898 -139250557 + (TAGA)n Simple_repeat Simple_repeat 1 71 0 390 247 51 51 chr12 4535987 4536165 -139250290 + L1MC4a LINE L1 5741 5918 -1890 1660 147 110 7 chr12 4536323 4536596 -139249859 - AluSx SINE Alu -11 301 1 1794 281 90 68 chr12 4536718 4537211 -139249244 + L1MEc LINE L1 35 516 -5880 2141 117 0 43 chr12 4537211 4537537 -139248918 + AluSx SINE Alu 1 312 0 2360 107 0 0 chr12 4537547 4537855 -139248600 + AluSx SINE Alu 1 308 -4 1794 281 90 68 chr12 4537855 4538755 -139247700 + L1MEc LINE L1 524 1470 -4926 2859 190 104 102 chr12 4538874 4539142 -139247313 + L1MEc LINE L1 2574 2840 -3375 225 125 0 0 chr12 4539142 4539174 -139247281 - Alu SINE Alu -224 78 47 2859 190 104 102 chr12 4539174 4539259 -139247196 + L1MEc LINE L1 2840 2923 -3292 7971 19 0 0 chr12 4539259 4540298 -139246157 - L1PA3 LINE L1 0 6155 5117 2859 190 104 102 chr12 4540298 4540839 -139245616 + L1MEc LINE L1 2923 3461 -2754 2167 102 0 7 chr12 4540839 4541124 -139245331 - AluSg SINE Alu -27 283 1 2859 190 104 102 chr12 4541124 4541156 -139245299 + L1MEc LINE L1 3461 3491 -2724 2326 45 52 3 chr12 4541156 4541445 -139245010 - AluY SINE Alu -8 303 1 2859 190 104 102 chr12 4541445 4541869 -139244586 + L1MEc LINE L1 3491 3986 -2229 337 314 20 65 chr12 4541912 4542157 -139244298 + L1M4 LINE L1 3702 3935 -2211 492 269 138 39 chr12 4542221 4542503 -139243952 - L2 LINE L2 -4 3309 3000 2061 238 41 23 chr12 4542678 4543330 -139243125 + HAL1 LINE L1 1076 1739 -768 767 307 121 18 chr12 4543346 4543799 -139242656 + MLT1J LTR MaLR 11 510 -1 1891 256 69 46 chr12 4543804 4544543 -139241912 + HAL1 LINE L1 1752 2507 0 1313 274 146 35 chr12 4544631 4545015 -139241440 + L1MC4a LINE L1 3797 4137 -1984 683 297 29 0 chr12 4545015 4545224 -139241231 - MER58C DNA MER1_type 0 215 1 1313 274 146 35 chr12 4545224 4546385 -139240070 + L1MC4a LINE L1 4137 5168 -953 2327 93 3 7 chr12 4546385 4546686 -139239769 + AluSq SINE Alu 1 300 -13 1313 274 146 35 chr12 4546686 4546875 -139239580 + L1MC4a LINE L1 5168 5335 -786 1783 171 3 0 chr12 4546875 4547161 -139239294 - AluJb SINE Alu -21 291 5 1313 274 146 35 chr12 4547161 4547341 -139239114 + L1MC4a LINE L1 5335 5951 -170 229 191 58 159 chr12 4547473 4547579 -139238876 - L1ME4a LINE L1 -35 6086 5971 210 43 22 43 chr12 4547579 4547625 -139238830 + (TTA)n Simple_repeat Simple_repeat 2 46 0 229 191 58 159 chr12 4547625 4547707 -139238748 - L1ME4a LINE L1 -150 5971 5928 1756 135 6 79 chr12 4547707 4548025 -139238430 + AluJb SINE Alu 1 295 -17 229 191 58 159 chr12 4548025 4548092 -139238363 - L1ME4a LINE L1 -193 5928 5856 197 280 130 30 chr12 4548501 4548601 -139237854 - L2 LINE L2 -4 3268 3159 533 348 8 37 chr12 4549757 4550001 -139236454 - MIR SINE MIR -6 256 20 2111 196 19 21 chr12 4550025 4550490 -139235965 - MLT1C LTR MaLR -3 464 1 205 176 0 0 chr12 4550509 4550543 -139235912 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 304 306 96 25 chr12 4550754 4550911 -139235544 - MIR SINE MIR -60 202 35 1744 166 32 3 chr12 4551390 4551673 -139234782 - AluJo SINE Alu -19 293 3 421 293 16 69 chr12 4552035 4552163 -139234292 - MER5B DNA MER1_type 0 178 62 1855 162 0 23 chr12 4552163 4552465 -139233990 - AluJo SINE Alu -13 299 5 421 293 16 69 chr12 4552465 4552524 -139233931 - MER5B DNA MER1_type -116 62 1 1752 142 28 34 chr12 4552830 4553153 -139233302 + L1MC2 LINE L1 6024 6344 0 309 324 54 0 chr12 4553786 4553934 -139232521 - MIR SINE MIR -13 249 94 2314 79 10 0 chr12 4554481 4554773 -139231682 + AluSp SINE Alu 6 300 -13 316 300 49 60 chr12 4555012 4555279 -139231176 - L2 LINE L2 -1 3312 3049 544 307 78 13 chr12 4555426 4555457 -139230998 + MIR SINE MIR 4 32 -230 2409 86 0 3 chr12 4555457 4555759 -139230696 + AluSc SINE Alu 1 301 -8 544 307 78 13 chr12 4555759 4555958 -139230497 + MIR SINE MIR 32 249 -13 1258 132 16 5 chr12 4556816 4557006 -139229449 + AluJb SINE Alu 114 305 -7 375 230 52 37 chr12 4557040 4557175 -139229280 - MLT1J LTR MaLR -374 137 1 483 261 14 35 chr12 4557268 4557410 -139229045 + L2 LINE L2 3134 3272 0 329 288 44 12 chr12 4557906 4558066 -139228389 - MIR3 SINE MIR -8 200 36 254 259 40 52 chr12 4558738 4558839 -139227616 - MIR SINE MIR -101 107 8 275 290 103 13 chr12 4561409 4561564 -139224891 + L3b LINE CR1 1284 1452 -131 364 264 61 74 chr12 4562065 4562213 -139224242 - MIR SINE MIR -49 213 68 574 294 135 37 chr12 4562478 4562958 -139223497 + L2 LINE L2 2782 3312 -1 456 253 95 28 chr12 4564134 4564279 -139222176 - MIR SINE MIR -65 143 36 755 325 15 18 chr12 4564465 4564862 -139221593 - L2 LINE L2 0 3313 2918 309 208 202 22 chr12 4564965 4565143 -139221312 + L1ME2 LINE L1 5944 6153 -11 2122 104 4 0 chr12 4565145 4565446 -139221009 - AluSx SINE Alu 0 302 1 207 362 9 29 chr12 4565641 4565746 -139220709 + MIR SINE MIR 80 182 -80 2256 215 47 103 chr12 4566322 4567201 -139219254 + MER97a DNA MER1_type? 59 887 -7 2437 107 0 0 chr12 4567550 4567860 -139218595 + AluSx SINE Alu 1 310 -2 417 101 0 0 chr12 4567890 4567982 -139218473 + Alu SINE Alu 241 332 0 271 250 16 0 chr12 4569210 4569274 -139217181 - MIR SINE MIR -112 150 86 240 293 0 13 chr12 4569488 4569563 -139216892 - MIR SINE MIR -104 158 85 482 305 122 15 chr12 4569872 4570186 -139216269 - L1MC/D LINE L1 -333 5788 5443 2212 101 0 7 chr12 4570199 4570496 -139215959 + AluSx SINE Alu 6 300 -12 2260 119 0 0 chr12 4570513 4570815 -139215640 + AluSx SINE Alu 1 302 -10 2314 97 3 0 chr12 4571770 4572068 -139214387 - AluSx SINE Alu -13 299 1 879 232 0 0 chr12 4572645 4572809 -139213646 - FRAM SINE Alu -2 164 1 9244 208 69 24 chr12 4573354 4575425 -139211030 + L1M2 LINE L1 157 2319 -4530 333 203 0 0 chr12 4575772 4575831 -139210624 + MER2 DNA MER2_type 287 345 0 362 300 36 7 chr12 4575839 4575979 -139210476 + MIR3 SINE MIR 54 197 -11 6912 52 36 0 chr12 4578788 4579878 -139206577 - L1P2 LINE L1 -642 5512 4381 297 295 93 16 chr12 4580379 4580508 -139205947 - L2 LINE L2 0 3272 3134 375 230 52 37 chr12 4580600 4580735 -139205720 + MLT1J LTR MaLR 1 137 -374 1258 132 16 5 chr12 4580769 4580959 -139205496 - AluJb SINE Alu -7 305 114 183 162 0 0 chr12 4581740 4581777 -139204678 + (TTA)n Simple_repeat Simple_repeat 1 37 0 238 184 0 174 chr12 4584274 4584383 -139202072 - MIR SINE MIR -117 145 56 538 242 97 36 chr12 4584789 4585037 -139201418 + AluJo SINE Alu 3 265 -47 8201 97 32 2 chr12 4585320 4586583 -139199872 - L1P LINE L1 -3385 2761 1460 375 307 62 41 chr12 4586745 4586989 -139199466 - L2 LINE L2 -832 2482 2234 1416 266 70 33 chr12 4586997 4587547 -139198908 + MLT1L LTR MaLR 1 570 -18 264 122 0 0 chr12 4589790 4589831 -139196624 + (CA)n Simple_repeat Simple_repeat 2 42 0 2211 98 3 10 chr12 4590008 4590313 -139196142 - AluSc SINE Alu -6 303 1 565 120 11 0 chr12 4590314 4590406 -139196049 - L1MC3 LINE L1 -99 7686 7594 203 170 21 0 chr12 4591421 4591468 -139194987 + CT-rich Low_complexity Low_complexity 2 49 0 2456 56 13 0 chr12 4593733 4594036 -139192419 + AluY SINE Alu 1 307 -4 305 241 126 0 chr12 4594055 4594142 -139192313 - LTR10A LTR ERV1 -511 98 1 823 202 255 47 chr12 4594171 4594552 -139191903 - MER31B LTR ERV1 0 466 7 243 0 0 0 chr12 4595431 4595458 -139190997 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 207 125 0 0 chr12 4596857 4596897 -139189558 + (A)n Simple_repeat Simple_repeat 1 40 0 27 29 0 0 chr12 4597001 4597035 -139189420 + AT_rich Low_complexity Low_complexity 1 34 0 207 186 0 0 chr12 4597115 4597158 -139189297 + A-rich Low_complexity Low_complexity 2 44 0 242 188 29 58 chr12 4597836 4597905 -139188550 + L2 LINE L2 3229 3295 -18 21 0 0 0 chr12 4598381 4598402 -139188053 + AT_rich Low_complexity Low_complexity 1 21 0 2029 115 7 14 chr12 4599242 4599537 -139186918 - AluSx SINE Alu -19 293 1 2149 94 10 13 chr12 4600302 4600610 -139185845 + AluSp SINE Alu 6 312 -1 1212 189 50 12 chr12 4601433 4601692 -139184763 - MLT1A1 LTR MaLR -93 272 4 255 278 101 35 chr12 4601974 4602172 -139184283 - L1MEc LINE L1 -4815 1495 1285 505 300 101 51 chr12 4602190 4602237 -139184218 - L1MEc LINE L1 -4917 1202 1159 2235 118 3 0 chr12 4602237 4602543 -139183912 - AluSq SINE Alu -6 307 1 505 300 101 51 chr12 4602543 4602584 -139183871 - L1MEc LINE L1 -4960 1159 1121 1544 199 82 15 chr12 4602584 4602926 -139183529 + MLT1A1 LTR MaLR 1 365 0 505 300 101 51 chr12 4602926 4603423 -139183032 - L1MEc LINE L1 -4998 1121 587 513 32 0 0 chr12 4603653 4603716 -139182739 + (CA)n Simple_repeat Simple_repeat 1 63 0 1936 124 29 0 chr12 4604371 4604665 -139181790 - AluSx SINE Alu 0 303 2 39 38 0 0 chr12 4604797 4604850 -139181605 + AT_rich Low_complexity Low_complexity 1 53 0 2073 116 17 10 chr12 4605059 4605361 -139181094 + AluSx SINE Alu 5 308 -4 678 302 49 40 chr12 4605432 4605760 -139180695 + L1MEc LINE L1 398 728 -5993 12468 170 27 20 chr12 4605769 4605936 -139180519 + L1MA2 LINE L1 2915 3079 -3067 1832 123 11 0 chr12 4605936 4606205 -139180250 + AluSq SINE Alu 35 306 -7 12468 170 27 20 chr12 4606205 4608483 -139177972 + L1MA2 LINE L1 3079 5379 -767 737 62 0 0 chr12 4608485 4608581 -139177874 + L1PA5 LINE L1 1 96 -6050 11179 44 5 0 chr12 4608581 4611926 -139174529 + L1PA5 LINE L1 623 6134 -20 11179 38 6 0 chr12 4611926 4613967 -139172488 + L1PA5 LINE L1 4094 6147 -7 11179 44 5 0 chr12 4613967 4613982 -139172473 + L1PA5 LINE L1 6134 6147 -7 6285 112 19 7 chr12 4613981 4614908 -139171547 + L1MA2 LINE L1 5366 6304 0 * 2022 147 0 0 chr12 4615060 4615352 -139171103 + AluJb SINE Alu 1 292 -20 276 260 61 41 chr12 4615425 4615621 -139170834 + L1MEc LINE L1 1578 1777 -4944 261 278 48 8 chr12 4615671 4615791 -139170664 + L1MEc LINE L1 1844 1950 -4590 366 265 97 17 chr12 4616015 4616306 -139170149 + L1MEc LINE L1 805 1050 -5165 835 236 5 26 chr12 4616308 4616503 -139169952 - MER58A DNA MER1_type -2 222 32 2390 81 0 7 chr12 4616625 4616921 -139169534 - AluSc SINE Alu -13 296 3 529 304 117 16 chr12 4617375 4617692 -139168763 - L1ME LINE L1 -330 5791 5443 2375 95 0 3 chr12 4617705 4618011 -139168444 + AluSx SINE Alu 6 310 -2 2091 75 8 4 chr12 4620761 4621026 -139165429 + AluSg SINE Alu 1 266 -44 2207 112 7 3 chr12 4621932 4622237 -139164218 - AluSx SINE Alu -6 306 1 499 269 139 22 chr12 4622421 4622744 -139163711 - L1ME LINE L1 -1170 4976 4616 442 257 192 66 chr12 4622780 4623431 -139163024 - L2 LINE L2 -1 3312 2579 2030 155 6 26 chr12 4623609 4623958 -139162497 - L1MC1 LINE L1 0 6402 6061 2337 80 0 3 chr12 4625028 4625328 -139161127 + AluY SINE Alu 1 299 -12 1176 97 0 0 chr12 4625345 4625490 -139160965 + AluSq/x SINE Alu 1 145 -168 201 74 0 0 chr12 4625494 4625521 -139160934 + (A)n Simple_repeat Simple_repeat 1 27 0 1110 239 75 95 chr12 4625589 4626242 -139160213 - L1MC4 LINE L1 -1 8041 7402 1386 229 90 43 chr12 4626249 4626739 -139159716 - L1MC4 LINE L1 -779 7263 6751 2075 218 63 51 chr12 4626756 4627306 -139159149 - L1MC1 LINE L1 -351 5882 5340 342 67 0 0 chr12 4627306 4627351 -139159104 + (TG)n Simple_repeat Simple_repeat 2 46 0 2075 218 63 51 chr12 4627351 4627957 -139158498 - L1MC1 LINE L1 -893 5340 4713 * 5425 153 43 89 chr12 4627954 4628249 -139158206 - L1MC3 LINE L1 0 7785 7478 566 155 29 0 chr12 4628249 4628352 -139158103 - L1MB4 LINE L1 0 6180 6075 5425 153 43 89 chr12 4628352 4628367 -139158088 - L1MC3 LINE L1 -307 7478 7464 2576 141 20 0 chr12 4628367 4628764 -139157691 - L1MA5 LINE L1 -10 6290 5886 5425 153 43 89 chr12 4628764 4628943 -139157512 - L1MC3 LINE L1 -321 7464 7278 2333 93 10 6 chr12 4628943 4629255 -139157200 - AluSp SINE Alu 0 313 1 5425 153 43 89 chr12 4629255 4630034 -139156421 - L1MC3 LINE L1 -507 7278 6573 879 106 28 28 chr12 4630043 4630184 -139156271 - L1MC3 LINE L1 -1449 6336 6196 * 4483 250 124 40 chr12 4630173 4630469 -139155986 - L1MC1 LINE L1 -1480 4735 4465 315 0 0 0 chr12 4630469 4630504 -139155951 + (TG)n Simple_repeat Simple_repeat 2 36 0 4483 250 124 40 chr12 4630504 4630684 -139155771 - L1MC1 LINE L1 -1750 4465 4302 1613 172 104 3 chr12 4630684 4631010 -139155445 + MER46B DNA MER2_type 1 234 -2 4483 250 124 40 chr12 4631010 4631797 -139154658 - L1MC1 LINE L1 -1913 4302 3583 1815 135 7 14 chr12 4631797 4632085 -139154370 - AluSx SINE Alu -21 291 6 4483 250 124 40 chr12 4632085 4633319 -139153136 - L1MC1 LINE L1 -2632 3583 2073 957 191 0 0 chr12 4633325 4633482 -139152973 - AluSc SINE Alu -19 290 134 1367 285 126 36 chr12 4633494 4634384 -139152071 - L1MC1 LINE L1 -4318 2078 1109 2472 90 0 0 chr12 4635100 4635410 -139151045 + AluSg SINE Alu 1 310 0 23 0 0 0 chr12 4635666 4635689 -139150766 + AT_rich Low_complexity Low_complexity 1 23 0 288 0 0 0 chr12 4637177 4637209 -139149246 + (T)n Simple_repeat Simple_repeat 1 32 0 187 302 63 32 chr12 4638405 4638468 -139147987 + MIR SINE MIR 16 80 -182 391 211 79 53 chr12 4638615 4638729 -139147726 - L2 LINE L2 -9 3304 3188 330 333 19 28 chr12 4638894 4639002 -139147453 - MIR3 SINE MIR -25 183 77 3877 19 0 0 chr12 4639127 4639546 -139146909 + L1PA2 LINE L1 5737 6155 0 304 246 0 0 chr12 4639562 4639627 -139146828 + MIR SINE MIR 2 66 -196 225 341 16 39 chr12 4640426 4640555 -139145900 + L2 LINE L2 2970 3095 -177 2399 83 0 3 chr12 4641574 4641875 -139144580 + AluY SINE Alu 1 300 -11 323 262 220 42 chr12 4642250 4642418 -139144037 + MIR SINE MIR 36 233 -29 382 324 72 27 chr12 4642847 4643069 -139143386 + MIR SINE MIR 29 260 -2 1994 118 10 0 chr12 4643736 4644025 -139142430 - AluSx SINE Alu -20 292 1 2565 52 0 0 chr12 4644629 4644936 -139141519 - AluY SINE Alu -4 307 1 279 223 117 68 chr12 4645042 4645145 -139141310 + L2 LINE L2 3205 3312 -1 23 0 0 0 chr12 4645464 4645487 -139140968 + AT_rich Low_complexity Low_complexity 1 23 0 573 76 0 0 chr12 4645929 4646008 -139140447 + (TGGA)n Simple_repeat Simple_repeat 1 79 0 315 49 0 0 chr12 4646401 4646442 -139140013 + (CA)n Simple_repeat Simple_repeat 2 42 0 270 331 63 49 chr12 4647922 4648064 -139138391 - L2 LINE L2 -22 3250 3107 408 253 77 45 chr12 4648143 4648332 -139138123 - MIR SINE MIR -50 212 20 854 247 60 8 chr12 4648346 4648581 -139137874 - MIR SINE MIR -3 259 13 1767 106 31 91 chr12 4649353 4649673 -139136782 + AluSx SINE Alu 1 301 -11 433 302 54 27 chr12 4650193 4650342 -139136113 + MER5B DNA MER1_type 1 153 -25 1898 130 17 0 chr12 4651035 4651328 -139135127 + AluSx SINE Alu 1 298 -14 197 372 58 43 chr12 4651689 4651896 -139134559 - L3b LINE CR1 -34 1549 1340 208 181 69 35 chr12 4652356 4652472 -139133983 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 * 336 224 45 0 chr12 4652430 4652564 -139133891 + (TA)n Simple_repeat Simple_repeat 2 141 0 28 0 0 0 chr12 4652568 4652596 -139133859 + AT_rich Low_complexity Low_complexity 1 28 0 318 278 83 21 chr12 4652615 4652759 -139133696 - L1ME4a LINE L1 -180 5941 5789 194 276 0 11 chr12 4652854 4652941 -139133514 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 2363 117 6 0 chr12 4653722 4654072 -139132383 + L1PA16 LINE L1 5811 6162 -4 1469 163 48 7 chr12 4654380 4654650 -139131805 + L1MC2 LINE L1 6015 6295 -49 232 170 0 0 chr12 4654650 4654697 -139131758 + T-rich Low_complexity Low_complexity 1 47 0 1216 14 0 0 chr12 4654698 4654837 -139131618 - L1PA2 LINE L1 0 6155 6017 301 154 0 0 chr12 4654837 4654885 -139131570 + L1MC2 LINE L1 6282 6333 -11 452 101 29 0 chr12 4655110 4655179 -139131276 - Alu SINE Alu -243 75 5 24 77 0 0 chr12 4655179 4655231 -139131224 + AT_rich Low_complexity Low_complexity 1 52 0 219 263 53 79 chr12 4655276 4655390 -139131065 + MIR3 SINE MIR 83 193 -15 27 29 0 0 chr12 4655604 4655638 -139130817 + AT_rich Low_complexity Low_complexity 1 34 0 267 137 20 0 chr12 4656785 4656836 -139129619 - HSMAR1 DNA Mariner -2 1285 1234 30 0 0 0 chr12 4656854 4656884 -139129571 + AT_rich Low_complexity Low_complexity 1 30 0 2109 116 0 0 chr12 4656884 4657185 -139129270 + AluSx SINE Alu 5 305 -7 358 225 92 23 chr12 4657221 4657333 -139129122 - MIR SINE MIR -70 138 20 2394 52 0 0 chr12 4658251 4658541 -139127914 - AluY SINE Alu -21 290 1 474 285 79 15 chr12 4658831 4659036 -139127419 - MIR SINE MIR -41 221 4 291 28 0 0 chr12 4659390 4659426 -139127029 + (TG)n Simple_repeat Simple_repeat 2 37 0 592 286 91 9 chr12 4660047 4660267 -139126188 + MIR SINE MIR 6 243 -19 209 139 23 0 chr12 4660296 4660339 -139126116 + (TTG)n Simple_repeat Simple_repeat 2 45 0 228 276 53 13 chr12 4660432 4660508 -139125947 + L2 LINE L2 3235 3313 0 1971 72 0 82 chr12 4660829 4661208 -139125247 - AluSc SINE Alu 0 354 1 313 288 0 68 chr12 4661600 4661718 -139124737 - MIR SINE MIR -75 187 78 370 252 99 18 chr12 4661844 4661955 -139124500 + MIR SINE MIR 49 168 -94 675 314 93 64 chr12 4662105 4662555 -139123900 - L2 LINE L2 0 3272 2836 2305 90 0 0 chr12 4662555 4662856 -139123599 + AluSx SINE Alu 1 301 -11 675 314 93 64 chr12 4662856 4663574 -139122881 - L2 LINE L2 -436 2836 2070 494 315 128 0 chr12 4664266 4664517 -139121938 - L2 LINE L2 -1254 2060 1778 1537 161 46 18 chr12 4664791 4665076 -139121379 - AluJb SINE Alu -19 293 1 1852 151 0 0 chr12 4665216 4665494 -139120961 + AluSx SINE Alu 1 278 -34 24 0 0 0 chr12 4665946 4665970 -139120485 + AT_rich Low_complexity Low_complexity 1 24 0 2188 103 0 0 chr12 4666039 4666340 -139120115 + AluY SINE Alu 1 301 -10 1009 220 19 6 chr12 4666356 4666577 -139119878 - MSTD LTR MaLR -4 392 203 220 135 19 19 chr12 4666590 4666642 -139119813 + GA-rich Low_complexity Low_complexity 4 55 0 464 178 0 0 chr12 4666705 4666778 -139119677 - MSTD LTR MaLR -323 73 1 1972 219 62 85 chr12 4666778 4667688 -139118767 - HAL1b LINE L1 -89 1259 371 201 167 0 0 chr12 4667713 4667749 -139118706 - MIR SINE MIR -14 248 213 636 254 113 29 chr12 4667808 4668083 -139118372 - HAL1b LINE L1 -981 367 70 285 329 4 9 chr12 4668153 4668292 -139118163 + CT-rich Low_complexity Low_complexity 1 138 0 417 73 0 61 chr12 4668500 4668582 -139117873 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 2009 125 3 13 chr12 4668861 4669164 -139117291 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr12 4669165 4669185 -139117270 + (TA)n Simple_repeat Simple_repeat 1 20 0 743 284 192 22 chr12 4669193 4669552 -139116903 + MLT1H1 LTR MaLR 27 446 -109 6971 98 34 4 chr12 4670920 4671881 -139114574 + THE1B-int LTR MaLR 286 1282 -298 1319 94 94 47 chr12 4671882 4672095 -139114360 + AluY SINE Alu 72 294 -17 2470 77 0 3 chr12 4672095 4672406 -139114049 + THE1B-int LTR MaLR 1271 1580 0 2440 106 19 30 chr12 4672406 4672774 -139113681 + THE1B LTR MaLR 1 364 0 285 274 55 0 chr12 4673618 4673691 -139112764 - MIR SINE MIR -113 149 73 2220 97 0 10 chr12 4673851 4674159 -139112296 - AluSq SINE Alu -8 305 1 394 234 109 15 chr12 4674274 4674411 -139112044 - MLT1L LTR MaLR 0 615 466 273 243 118 5 chr12 4674412 4674500 -139111955 - MLT1L LTR MaLR -191 391 235 302 246 71 60 chr12 4674788 4674971 -139111484 - L1ME4a LINE L1 -9 6112 5928 22 0 0 0 chr12 4675030 4675052 -139111403 + AT_rich Low_complexity Low_complexity 1 22 0 1349 218 14 7 chr12 4675168 4675453 -139111002 - L1ME4a LINE L1 -338 5783 5497 296 300 25 21 chr12 4675503 4675623 -139110832 + MIR SINE MIR 2 114 -94 2181 98 0 0 chr12 4675667 4675962 -139110493 - AluSg SINE Alu -15 295 1 708 192 32 0 chr12 4676115 4676271 -139110184 - Charlie1b DNA MER1_type -9 514 354 1116 175 0 73 chr12 4676273 4676547 -139109908 + AluJb SINE Alu 40 293 -19 1504 176 119 0 chr12 4676558 4676870 -139109585 - Charlie1b DNA MER1_type -167 356 8 275 200 0 0 chr12 4676870 4676920 -139109535 + MLT1L LTR MaLR 156 205 -410 23 33 0 0 chr12 4677975 4678005 -139108450 + AT_rich Low_complexity Low_complexity 1 30 0 287 175 17 0 chr12 4678006 4678063 -139108392 - AluJ/FLAM SINE Alu -205 97 55 183 243 0 0 chr12 4678275 4678312 -139108143 - MIR3 SINE MIR -3 205 169 288 219 62 0 chr12 4679950 4680014 -139106441 + MIR SINE MIR 86 153 -55 430 195 37 137 chr12 4680031 4680221 -139106234 + MER5B DNA MER1_type 6 176 -2 194 298 0 0 chr12 4680860 4680907 -139105548 - MIR SINE MIR 0 262 216 210 293 0 0 chr12 4680909 4680991 -139105464 + T-rich Low_complexity Low_complexity 1 82 0 2120 114 20 0 chr12 4680997 4681303 -139105152 - AluSx SINE Alu 0 312 1 239 203 0 31 chr12 4681303 4681360 -139105095 - MIR SINE MIR -60 202 146 1458 185 124 43 chr12 4681360 4681706 -139104749 + MLT1A2 LTR MaLR 1 374 0 1900 133 3 7 chr12 4681707 4682009 -139104446 - AluJo SINE Alu -1 311 11 262 326 33 0 chr12 4682015 4682116 -139104339 - MIR SINE MIR -67 141 38 272 278 188 15 chr12 4682887 4683020 -139103435 - MIR SINE MIR -56 206 51 632 183 67 39 chr12 4683159 4683339 -139103116 - MER53 DNA DNA -4 185 1 882 129 232 178 chr12 4683486 4683796 -139102659 - LTR12 LTR ERV1 -228 486 153 2062 118 13 0 chr12 4683796 4684102 -139102353 - AluY SINE Alu -1 310 1 882 129 232 178 chr12 4684102 4684140 -139102315 - LTR12 LTR ERV1 -561 153 119 250 231 0 0 chr12 4684142 4684194 -139102261 - LTR30 LTR ERV1 -670 52 1 1541 223 3 0 chr12 4684247 4684570 -139101885 + L1MB3 LINE L1 5854 6177 -6 1343 210 93 110 chr12 4685468 4686229 -139100226 - MER20B DNA MER1_type 0 783 36 376 110 14 14 chr12 4686282 4686355 -139100100 + (TTTCC)n Simple_repeat Simple_repeat 2 74 0 2864 142 21 4 chr12 4686509 4686982 -139099473 + L1PB4 LINE L1 5662 6142 -14 1610 160 68 0 chr12 4687027 4687308 -139099147 - AluJb SINE Alu -12 300 1 284 285 0 80 chr12 4687356 4687493 -139098962 - MIR SINE MIR -51 211 86 301 309 22 37 chr12 4687582 4687718 -139098737 + L2 LINE L2 3180 3313 0 899 273 62 4 chr12 4687946 4688173 -139098282 - MIR SINE MIR -2 260 21 25 31 0 0 chr12 4688462 4688494 -139097961 + AT_rich Low_complexity Low_complexity 1 32 0 1509 141 32 25 chr12 4688497 4688781 -139097674 - L1MA5A LINE L1 -9 6288 6003 1960 160 0 0 chr12 4689642 4689948 -139096507 + AluSx SINE Alu 1 306 -6 218 211 21 42 chr12 4690346 4690441 -139096014 + C-rich Low_complexity Low_complexity 6 98 0 589 208 75 0 chr12 4690480 4690600 -139095855 - MER20 DNA MER1_type -90 129 1 1116 234 72 41 chr12 4690784 4691147 -139095308 + MLT1B LTR MaLR 6 379 -11 2215 103 33 0 chr12 4692104 4692406 -139094049 - AluSx SINE Alu 0 312 1 1859 106 41 24 chr12 4692592 4692734 -139093721 - AluSx SINE Alu -14 298 160 2756 123 38 131 chr12 4692734 4693345 -139093110 - MER41C LTR ERV1 0 554 1 1859 106 41 24 chr12 4693345 4693495 -139092960 - AluSx SINE Alu -152 160 1 813 181 0 0 chr12 4693497 4693630 -139092825 - FLAM_C SINE Alu -10 133 1 301 276 52 9 chr12 4693689 4693805 -139092650 + L1MC1 LINE L1 5883 6003 -330 885 194 0 0 chr12 4693860 4694020 -139092435 + AluJb SINE Alu 132 291 -21 242 157 146 79 chr12 4694060 4694149 -139092306 + L1MB8 LINE L1 6040 6134 -44 291 104 0 0 chr12 4694536 4694584 -139091871 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 2231 82 4 0 chr12 4694584 4694864 -139091591 - AluSp SINE Alu -32 281 1 2259 100 0 19 chr12 4694867 4695176 -139091279 - AluSx SINE Alu -9 303 1 275 294 154 37 chr12 4695690 4695826 -139090629 + MER5A DNA MER1_type 33 184 -5 * 278 254 18 64 chr12 4695820 4695930 -139090525 + L2 LINE L2 3168 3272 0 2430 77 0 19 chr12 4696855 4697167 -139089288 - AluY SINE Alu -5 306 1 2521 67 0 0 chr12 4697554 4697853 -139088602 + AluY SINE Alu 1 299 -12 1668 158 53 11 chr12 4698834 4699119 -139087336 + AluJb SINE Alu 1 297 -15 211 279 109 73 chr12 4701749 4701914 -139084541 - MIR3 SINE MIR -5 203 33 232 320 39 16 chr12 4702002 4702130 -139084325 + MIR3 SINE MIR 13 143 -65 1768 114 5 152 chr12 4702344 4702739 -139083716 + MER1B DNA MER1_type 1 337 0 1690 158 31 17 chr12 4703545 4703836 -139082619 + AluJo SINE Alu 1 295 -17 467 331 6 0 chr12 4704256 4704413 -139082042 + MIR SINE MIR 78 235 -27 1140 262 108 48 chr12 4705308 4705697 -139080758 + L1MC4a LINE L1 5337 5770 -2038 2121 101 31 3 chr12 4705697 4705985 -139080470 + AluSc SINE Alu 11 306 -3 1140 262 108 48 chr12 4705985 4706152 -139080303 + L1MC4a LINE L1 5770 5926 -1882 206 245 0 0 chr12 4706866 4706919 -139079536 + T-rich Low_complexity Low_complexity 1 53 0 203 271 40 66 chr12 4708382 4708533 -139077922 - MIR3 SINE MIR -16 192 46 211 328 26 72 chr12 4710076 4710271 -139076184 - MER5A DNA MER1_type -3 186 1 271 282 0 0 chr12 4711149 4711227 -139075228 + MER69 DNA AcHobo 1 78 -99 531 267 23 8 chr12 4713697 4713828 -139072627 - MIR SINE MIR -106 156 24 519 271 94 6 chr12 4715380 4715550 -139070905 + MIR SINE MIR 21 205 -57 184 287 170 72 chr12 4718207 4718472 -139067983 + L2 LINE L2 2817 3107 -165 3689 271 44 28 chr12 4718876 4720149 -139066306 + L1MEc LINE L1 16 756 -5640 2155 130 3 3 chr12 4720149 4720457 -139065998 + AluSg SINE Alu 1 308 -2 3689 271 44 28 chr12 4720457 4720899 -139065556 + L1MEc LINE L1 756 1189 -5207 1931 213 29 17 chr12 4720885 4721298 -139065157 + L1MC1 LINE L1 5 422 -6004 * 2137 126 152 0 chr12 4721291 4721712 -139064743 + L1MC1 LINE L1 1035 1519 -4907 2040 156 160 76 chr12 4721719 4721864 -139064591 + MER39 LTR ERV1 20 151 -556 2131 113 0 3 chr12 4721864 4722147 -139064308 + AluSx SINE Alu 1 282 -30 2040 156 160 76 chr12 4722147 4722514 -139063941 + MER39 LTR ERV1 151 575 -132 883 118 69 0 chr12 4722516 4722660 -139063795 - L1MCa LINE L1 -4759 1667 1514 256 232 0 18 chr12 4722660 4722716 -139063739 - MER39 LTR ERV1 0 707 653 772 180 77 16 chr12 4722723 4722917 -139063538 + L1MC1 LINE L1 1977 2182 -4244 2398 97 0 3 chr12 4722917 4723227 -139063228 + AluSx SINE Alu 1 309 -3 794 183 0 15 chr12 4723242 4723379 -139063076 + FLAM_C SINE Alu 6 140 -3 11466 221 37 15 chr12 4723410 4725828 -139060627 + L1MC1 LINE L1 2170 4533 -2080 2296 80 3 10 chr12 4725828 4726116 -139060339 + AluSq SINE Alu 9 294 -19 11466 221 37 15 chr12 4726116 4727469 -139058986 + L1MC1 LINE L1 4533 6056 -557 2273 107 3 0 chr12 4727469 4727768 -139058687 + AluSg SINE Alu 1 300 -10 11466 221 37 15 chr12 4727768 4728322 -139058133 + L1MC1 LINE L1 6056 6596 -17 365 255 49 11 chr12 4728346 4728472 -139057983 + L1ME1 LINE L1 1500 1728 -4916 2305 59 52 0 chr12 4728508 4728798 -139057657 + AluY SINE Alu 1 305 -6 2682 182 31 2 chr12 4728890 4729406 -139057049 - L1MA6 LINE L1 0 6300 5770 2161 253 150 15 chr12 4729409 4729421 -139057034 + L1ME1 LINE L1 1874 1883 -4761 2212 69 4 7 chr12 4729421 4729696 -139056759 + AluSc SINE Alu 33 306 -3 2161 253 150 15 chr12 4729696 4730921 -139055534 + L1ME1 LINE L1 1883 3225 -3419 * 2929 221 95 34 chr12 4730919 4731124 -139055331 + L1ME1 LINE L1 4028 4219 -2425 2432 66 0 26 chr12 4731124 4731428 -139055027 - AluY SINE Alu -15 296 1 2929 221 95 34 chr12 4731428 4732142 -139054313 + L1ME1 LINE L1 4219 5003 -1641 1078 229 16 12 chr12 4732152 4732401 -139054054 + MLT2D LTR ERVL 1 250 -164 5726 143 6 28 chr12 4732444 4732766 -139053689 + L1MA6 LINE L1 5469 5796 -1002 200 35 35 0 chr12 4732766 4732795 -139053660 + (CAA)n Simple_repeat Simple_repeat 1 30 0 5726 143 6 28 chr12 4732795 4733724 -139052731 + L1MA6 LINE L1 5796 6692 -106 3117 236 33 11 chr12 4733729 4734490 -139051965 + L1MB7 LINE L1 5407 6184 0 818 251 144 0 chr12 4734501 4734772 -139051683 + L1ME1 LINE L1 5114 5423 -1221 1310 205 27 67 chr12 4734780 4735151 -139051304 + MLT1D LTR MaLR 1 356 -149 2886 213 72 57 chr12 4735152 4735275 -139051180 + L1ME1 LINE L1 5555 5675 -989 189 0 0 0 chr12 4735275 4735296 -139051159 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1837 167 0 0 chr12 4735299 4735581 -139050874 - AluSx SINE Alu -30 282 1 2886 213 72 57 chr12 4735581 4736550 -139049905 + L1ME1 LINE L1 5676 6661 -3 250 320 105 32 chr12 4736786 4737005 -139049450 - L3 LINE CR1 -23 1554 1320 213 301 41 0 chr12 4737335 4737408 -139049047 + L3 LINE CR1 1486 1561 -16 453 252 202 38 chr12 4737506 4737768 -139048687 + MLT1L LTR MaLR 311 615 0 2331 188 62 10 chr12 4737845 4738357 -139048098 + MLT1F LTR MaLR 4 542 0 950 242 0 0 chr12 4738672 4738850 -139047605 + MER58A DNA MER1_type 1 178 -46 194 150 25 0 chr12 4739122 4739162 -139047293 + CT-rich Low_complexity Low_complexity 2 42 0 219 69 0 0 chr12 4739258 4739287 -139047168 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 239 0 0 chr12 4739803 4739849 -139046606 - L2 LINE L2 -88 3184 3139 5461 158 52 61 chr12 4740792 4742149 -139044306 + L1MA8 LINE L1 4187 5535 -743 2455 157 35 27 chr12 4742153 4742748 -139043707 + L1MA8 LINE L1 5683 6280 -11 566 275 185 18 chr12 4742913 4743135 -139043320 - MIR SINE MIR 0 262 4 661 125 19 0 chr12 4743601 4743720 -139042735 + L1MB7 LINE L1 6053 6174 0 240 295 63 53 chr12 4744056 4744151 -139042304 + L2 LINE L2 3160 3255 -17 358 293 169 38 chr12 4744853 4745119 -139041336 - L2 LINE L2 -20 3252 2952 896 253 0 10 chr12 4745193 4745391 -139041064 + MER58A DNA MER1_type 1 196 -28 1970 213 89 38 chr12 4745870 4747160 -139039295 - L1MDb LINE L1 -4227 2179 771 519 303 156 45 chr12 4747420 4747773 -139038682 + L2 LINE L2 2920 3311 -2 235 330 45 0 chr12 4747969 4748057 -139038398 - MIR SINE MIR -111 151 60 372 276 86 32 chr12 4748062 4748404 -139038051 - L1MEc LINE L1 -892 1684 1268 691 269 51 76 chr12 4748412 4748724 -139037731 + L1ME1 LINE L1 4947 5265 -901 2122 125 0 0 chr12 4748724 4749013 -139037442 + AluSg SINE Alu 1 289 -21 691 269 51 76 chr12 4749013 4749132 -139037323 + L1ME1 LINE L1 5265 5386 -780 2355 98 7 0 chr12 4749132 4749439 -139037016 + AluSx SINE Alu 2 310 -2 691 269 51 76 chr12 4749439 4749956 -139036499 + L1ME1 LINE L1 5386 5867 -299 1410 225 137 63 chr12 4750127 4750638 -139035817 + MLT1H LTR MaLR 1 549 0 278 127 13 38 chr12 4751667 4751746 -139034709 + GA-rich Low_complexity Low_complexity 3 79 0 564 260 106 41 chr12 4751747 4751993 -139034462 - MIR SINE MIR 0 262 1 2566 244 16 4 chr12 4752295 4752856 -139033599 + MER82 DNA MER2_type 1 568 -85 384 221 0 0 chr12 4752967 4753044 -139033411 + MER82 DNA MER2_type 577 653 0 1087 168 35 0 chr12 4754749 4754951 -139031504 + MER2 DNA MER2_type 1 209 -136 21 57 0 0 chr12 4757151 4757186 -139029269 + AT_rich Low_complexity Low_complexity 1 35 0 1778 156 72 46 chr12 4759089 4759140 -139027315 - Charlie1b DNA MER1_type -2240 521 473 686 213 8 0 chr12 4759140 4759262 -139027193 + FLAM_A SINE Alu 1 123 -10 1778 156 72 46 chr12 4759262 4759626 -139026829 - Charlie1b DNA MER1_type -2288 473 95 201 369 54 39 chr12 4760465 4760595 -139025860 + L2 LINE L2 3137 3268 -4 2280 91 0 0 chr12 4761017 4761322 -139025133 + AluSx SINE Alu 1 305 0 21 0 0 0 chr12 4761424 4761445 -139025010 + AT_rich Low_complexity Low_complexity 1 21 0 2963 220 39 8 chr12 4761480 4762220 -139024235 - L1M4 LINE L1 -930 5216 4454 23 0 0 0 chr12 4763145 4763168 -139023287 + AT_rich Low_complexity Low_complexity 1 23 0 1884 225 115 42 chr12 4764155 4764728 -139021727 + L1ME3A LINE L1 5556 6170 0 1886 109 7 59 chr12 4765871 4766175 -139020280 - MER1B DNA MER1_type 0 339 52 576 208 9 0 chr12 4766395 4766501 -139019954 - FLAM_A SINE Alu -18 124 18 183 295 0 0 chr12 4766995 4767073 -139019382 + GA-rich Low_complexity Low_complexity 3 80 0 216 0 0 0 chr12 4767852 4767876 -139018579 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2160 107 0 0 chr12 4767876 4768157 -139018298 - AluSc SINE Alu -28 281 1 1090 291 156 29 chr12 4768161 4768583 -139017872 + L2 LINE L2 2329 2696 -617 3502 116 27 12 chr12 4768583 4769101 -139017354 + MER1A DNA MER1_type 1 526 -1 1090 291 156 29 chr12 4769101 4769563 -139016892 + L2 LINE L2 2696 3313 0 420 288 51 24 chr12 4770466 4770659 -139015796 + MIR SINE MIR 16 218 -44 25 51 0 0 chr12 4770716 4770755 -139015700 + AT_rich Low_complexity Low_complexity 1 39 0 438 78 47 0 chr12 4821633 4821697 -138964758 + LTR56 LTR ERV1 262 328 -117 248 247 123 0 chr12 4822000 4822073 -138964382 + MIR SINE MIR 133 214 -48 586 260 49 29 chr12 4822136 4822340 -138964115 + Charlie8 DNA MER1_type 16 223 -2194 1103 175 200 66 chr12 4822371 4822736 -138963719 - LTR37A LTR ERV1 -1 425 12 267 234 182 0 chr12 4823511 4823588 -138962867 - L2 LINE L2 -2 3311 3221 1001 88 0 0 chr12 4823611 4823736 -138962719 - AluJb SINE Alu -187 125 1 855 107 25 0 chr12 4823807 4823928 -138962527 + MSTB1 LTR MaLR 309 432 0 1427 175 66 84 chr12 4824121 4824185 -138962270 + MER67C LTR ERV1 3 67 -575 2594 155 47 0 chr12 4824185 4824591 -138961864 - MSTA LTR MaLR -3 425 1 1427 175 66 84 chr12 4824591 4824918 -138961537 + MER67C LTR ERV1 67 408 -234 234 313 125 18 chr12 4825264 4825376 -138961079 + MIR SINE MIR 24 147 -115 808 233 56 23 chr12 4825463 4825678 -138960777 - MIR SINE MIR -1 261 40 207 0 0 0 chr12 4826001 4826024 -138960431 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1851 121 0 24 chr12 4826026 4826316 -138960139 - AluSg SINE Alu -27 283 1 5575 42 8 2 chr12 4826800 4827439 -138959016 + SVA Other Other 744 1386 0 1181 167 68 4 chr12 4827521 4827755 -138958700 + L1MA4 LINE L1 6043 6291 -9 477 275 15 8 chr12 4827968 4828099 -138958356 - MER5A DNA MER1_type -3 186 55 214 284 49 39 chr12 4828022 4828124 -138958331 + MER5A DNA MER1_type 69 171 -18 * 518 211 124 103 chr12 4828135 4828241 -138958214 - MER5A DNA MER1_type 0 189 76 1741 164 20 13 chr12 4828241 4828540 -138957915 - AluJo SINE Alu -11 301 1 518 211 124 103 chr12 4828540 4828618 -138957837 - MER5A DNA MER1_type -113 76 1 190 343 45 0 chr12 4828763 4828830 -138957625 - MIR SINE MIR -70 138 69 23 0 0 0 chr12 4829185 4829208 -138957247 + AT_rich Low_complexity Low_complexity 1 23 0 714 286 87 49 chr12 4830886 4831355 -138955100 - L2 LINE L2 -1343 1971 1485 799 195 0 0 chr12 4832121 4832249 -138954206 - FLAM_A SINE Alu -4 129 2 185 282 218 9 chr12 4832736 4832846 -138953609 + L2 LINE L2 1838 1970 -1344 * 395 246 55 0 chr12 4832844 4832954 -138953501 - L2 LINE L2 -5 3308 3193 366 218 0 39 chr12 4833276 4833354 -138953101 + L2 LINE L2 3239 3313 0 931 167 0 0 chr12 4833546 4833678 -138952777 - FLAM_A SINE Alu 0 133 2 1561 159 4 30 chr12 4833683 4833954 -138952501 - AluJo SINE Alu -48 264 1 259 232 203 22 chr12 4834605 4834743 -138951712 - L1ME4a LINE L1 -3 6118 5956 672 274 88 9 chr12 4834785 4835103 -138951352 - L1ME4a LINE L1 -234 5887 5545 37 52 0 0 chr12 4835115 4835173 -138951282 + AT_rich Low_complexity Low_complexity 1 58 0 251 180 126 63 chr12 4835215 4835326 -138951129 - L1ME4a LINE L1 -2336 5472 5355 1185 290 133 51 chr12 4836280 4837194 -138949261 + L2 LINE L2 1008 1996 -1318 3432 212 73 13 chr12 4837326 4838419 -138948036 - L1MB8 LINE L1 -14 6164 5009 25900 92 25 20 chr12 4838445 4844792 -138941663 - L1PA7 LINE L1 0 6469 7 1516 234 133 6 chr12 4844807 4845467 -138940988 - L1MB8 LINE L1 -1123 5023 4259 197 182 247 13 chr12 4846722 4846799 -138939656 - MER5B DNA MER1_type 0 178 84 269 158 35 0 chr12 4847065 4847122 -138939333 + GA-rich Low_complexity Low_complexity 4 62 0 282 183 17 0 chr12 4847400 4847460 -138938995 + MER116 DNA Mariner 1 61 -19 932 176 69 5 chr12 4847467 4847655 -138938800 + MER20 DNA MER1_type 20 219 0 617 286 59 79 chr12 4847661 4848043 -138938412 + L2 LINE L2 2903 3272 0 189 132 0 0 chr12 4848868 4848906 -138937549 + (T)n Simple_repeat Simple_repeat 1 38 0 2371 94 0 0 chr12 4848929 4849226 -138937229 + AluSg SINE Alu 1 297 -13 4164 170 38 31 chr12 4849237 4849407 -138937048 + L1MB2 LINE L1 4383 4550 -1621 936 174 214 86 chr12 4849407 4849758 -138936697 + MSTD LTR MaLR 1 396 0 4164 170 38 31 chr12 4849758 4850635 -138935820 + L1MB2 LINE L1 4550 5449 -722 1541 190 34 17 chr12 4850635 4850930 -138935525 + AluJo SINE Alu 2 301 -11 4164 170 38 31 chr12 4850930 4851620 -138934835 + L1MB2 LINE L1 5449 6132 -39 1386 181 47 4 chr12 4851618 4851894 -138934561 - MLT-int LTR MaLR -76 1659 1372 * 294 312 0 0 chr12 4851954 4852031 -138934424 - MLT-int LTR MaLR -373 1362 1286 279 261 0 0 chr12 4852244 4852309 -138934146 - MLT-int LTR MaLR -993 742 678 2294 193 11 11 chr12 4852421 4852893 -138933562 - MLT1B-int LTR MaLR -640 731 260 708 123 9 0 chr12 4852884 4852998 -138933457 - MLT1B-int LTR MaLR -1256 115 1 * 1539 196 33 48 chr12 4853002 4853394 -138933061 - MLT1B LTR MaLR -4 386 1 225 108 0 0 chr12 4853395 4853432 -138933023 + L1MB3 LINE L1 6140 6176 -7 1404 146 3 24 chr12 4853537 4853822 -138932633 + L1MC2 LINE L1 5785 6062 -282 301 189 122 14 chr12 4853827 4853901 -138932554 - MIR SINE MIR -107 101 20 2536 323 78 44 chr12 4854663 4856399 -138930056 + L2 LINE L2 564 2371 -943 845 230 17 0 chr12 4856399 4856573 -138929882 - MER5B DNA MER1_type -1 177 1 2536 323 78 44 chr12 4856573 4856733 -138929722 + L2 LINE L2 2371 2524 -790 326 318 0 12 chr12 4856782 4856867 -138929588 + L2 LINE L2 3230 3313 0 864 138 0 36 chr12 4857849 4857987 -138928468 + FLAM_C SINE Alu 1 133 0 26 50 0 0 chr12 4857987 4858027 -138928428 + AT_rich Low_complexity Low_complexity 1 40 0 233 325 12 36 chr12 4858248 4858331 -138928124 - L2 LINE L2 -5 3267 3187 213 264 14 42 chr12 4858673 4858745 -138927710 - L3 LINE CR1 -600 977 908 249 292 0 0 chr12 4859679 4859744 -138926711 + GA-rich Low_complexity Low_complexity 3 67 0 341 269 213 6 chr12 4859881 4860041 -138926414 + MIR SINE MIR 29 221 -41 405 238 57 8 chr12 4860799 4860921 -138925534 - MER20B DNA MER1_type -591 192 65 1455 136 136 7 chr12 4861119 4861405 -138925050 - MER33 DNA MER1_type -1 323 1 1140 220 5 0 chr12 4861413 4861631 -138924824 + MER58A DNA MER1_type 1 219 -5 820 307 98 9 chr12 4863231 4863547 -138922908 - L3 LINE CR1 -63 1514 1171 248 291 9 64 chr12 4863935 4864045 -138922410 - MIR SINE MIR -1 261 158 1861 293 181 20 chr12 4864061 4865070 -138921385 - L2 LINE L2 -1220 2094 923 280 270 90 0 chr12 4865072 4865161 -138921294 + MIR SINE MIR 160 256 -6 219 357 83 0 chr12 4865236 4865320 -138921135 - L2 LINE L2 -36 3236 3146 * 267 262 12 24 chr12 4865316 4865400 -138921055 + MIR SINE MIR 180 262 0 29 28 0 0 chr12 4865569 4865605 -138920850 + AT_rich Low_complexity Low_complexity 1 36 0 205 283 0 0 chr12 4865656 4865709 -138920746 + MIR SINE MIR 210 262 0 185 313 75 0 chr12 4866267 4866334 -138920121 + MIR SINE MIR 191 262 0 310 364 29 17 chr12 4866515 4866688 -138919767 - MER5B DNA MER1_type -3 175 1 279 274 97 9 chr12 4867056 4867169 -138919286 - MIR SINE MIR -56 206 84 311 309 111 37 chr12 4867804 4867966 -138918489 - MIR3 SINE MIR -14 194 21 517 276 167 14 chr12 4868131 4868352 -138918103 + L2 LINE L2 2896 3150 -163 826 171 0 0 chr12 4869218 4869347 -138917108 - FLAM_C SINE Alu -3 130 2 279 295 162 46 chr12 4869350 4869523 -138916932 + MIR SINE MIR 20 212 -50 311 197 70 14 chr12 4869585 4869656 -138916799 - MIR3 SINE MIR -7 201 127 2338 93 7 3 chr12 4869656 4869956 -138916499 + AluSx SINE Alu 1 301 -11 2085 114 17 3 chr12 4870060 4870349 -138916106 - AluSx SINE Alu -18 294 2 1232 113 149 9 chr12 4870939 4871368 -138915087 + MER1A DNA MER1_type 1 533 0 2007 138 3 7 chr12 4871812 4872109 -138914346 - AluSx SINE Alu -16 296 1 210 216 0 39 chr12 4872655 4872706 -138913749 - L2 LINE L2 -2 3311 3263 301 300 12 0 chr12 4873174 4873254 -138913201 + MIR3 SINE MIR 109 189 -19 209 321 103 38 chr12 4873885 4874069 -138912386 - L2 LINE L2 0 3313 3118 1079 99 31 31 chr12 4875268 4875430 -138911025 + AluSq SINE Alu 44 205 -108 667 145 73 0 chr12 4875552 4875676 -138910779 + AluSg/x SINE Alu 175 307 -2 494 312 0 48 chr12 4875787 4875973 -138910482 + MER5B DNA MER1_type 2 178 0 3162 57 0 37 chr12 4876570 4876623 -138909832 + L1PA6 LINE L1 5735 5788 -366 2561 68 0 0 chr12 4876623 4876934 -138909521 + AluY SINE Alu 1 311 0 3162 57 0 37 chr12 4876934 4877316 -138909139 + L1PA6 LINE L1 5788 6154 0 190 324 15 15 chr12 4877774 4877842 -138908613 - L2 LINE L2 -850 2464 2397 225 235 0 39 chr12 4878264 4878315 -138908140 - L2 LINE L2 -1 3271 3223 198 138 15 62 chr12 4878855 4878920 -138907535 + (TA)n Simple_repeat Simple_repeat 2 63 0 217 235 20 0 chr12 4879078 4879129 -138907326 - L2 LINE L2 -1 3312 3261 405 196 82 44 chr12 4879132 4879290 -138907165 - LTR41 LTR ERVL -6 767 604 499 159 104 99 chr12 4879387 4879569 -138906886 - LTR41 LTR ERVL -590 183 1 1805 169 21 0 chr12 4879693 4879983 -138906472 + AluJo SINE Alu 1 296 -16 35 24 0 0 chr12 4883426 4883468 -138902987 + AT_rich Low_complexity Low_complexity 1 42 0 726 153 48 16 chr12 4883468 4883592 -138902863 - AluJb SINE Alu -183 129 2 2474 80 0 0 chr12 4883799 4884110 -138902345 + AluY SINE Alu 1 311 0 293 266 39 34 chr12 4884507 4884714 -138901741 - MER31-int LTR ERV1 -3050 1886 1679 430 204 8 15 chr12 4884856 4884988 -138901467 - MER31-int LTR ERV1 -3494 1442 1312 207 69 0 0 chr12 4885116 4885145 -138901310 + (TG)n Simple_repeat Simple_repeat 1 29 0 1249 182 176 6 chr12 4885766 4886118 -138900337 - LTR37A LTR ERV1 -2 424 13 216 0 0 0 chr12 4886251 4886275 -138900180 + (TTTTC)n Simple_repeat Simple_repeat 3 26 0 680 313 39 27 chr12 4886294 4886550 -138899905 + MIR SINE MIR 2 260 -2 2105 52 4 0 chr12 4887095 4887366 -138899089 - L1PA13 LINE L1 -5 6158 5887 1035 93 0 7 chr12 4887366 4887517 -138898938 + L1PA13 LINE L1 5734 5883 -280 984 280 4 30 chr12 4887547 4887815 -138898640 + MIR SINE MIR 2 262 0 267 147 27 13 chr12 4890985 4891060 -138895395 + CT-rich Low_complexity Low_complexity 1 76 0 587 243 158 7 chr12 4891374 4891526 -138894929 + MER5A DNA MER1_type 3 177 -12 432 0 0 0 chr12 4892374 4892422 -138894033 + (CA)n Simple_repeat Simple_repeat 2 49 0 25 0 0 0 chr12 4892432 4892457 -138893998 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr12 4892500 4892521 -138893934 + AT_rich Low_complexity Low_complexity 1 21 0 882 285 118 23 chr12 4892546 4892976 -138893479 - L1ME LINE L1 -327 5794 5406 5604 129 12 3 chr12 4892976 4894690 -138891765 - L1PA14 LINE L1 -2 6159 4409 882 285 118 23 chr12 4894690 4894986 -138891469 - L1ME LINE L1 -715 5406 5028 7414 133 56 2 chr12 4894986 4896154 -138890301 - Tigger3b DNA MER2_type 0 1231 1 882 285 118 23 chr12 4896154 4896231 -138890224 - L1ME LINE L1 -1093 5028 4960 2224 73 52 0 chr12 4896243 4896529 -138889926 - AluSg SINE Alu -9 301 1 407 247 77 29 chr12 4896552 4896722 -138889733 - L1ME LINE L1 -1314 4832 4655 2406 200 44 68 chr12 4896732 4897157 -138889298 - L1MB7 LINE L1 -192 6386 5952 1839 154 13 7 chr12 4897157 4897462 -138888993 - AluJo SINE Alu -5 307 1 2406 200 44 68 chr12 4897462 4897980 -138888475 - L1MB7 LINE L1 -626 5952 5478 1037 205 68 0 chr12 4897980 4898185 -138888270 + MER20 DNA MER1_type 1 219 0 2406 200 44 68 chr12 4898185 4898427 -138888028 - L1MB7 LINE L1 -1100 5478 5232 3891 223 66 42 chr12 4898430 4898970 -138887485 - L1MB7 LINE L1 -3816 2724 2198 2242 114 3 0 chr12 4898970 4899268 -138887187 - AluSx SINE Alu -13 299 1 3891 223 66 42 chr12 4899268 4900167 -138886288 - L1MB7 LINE L1 -4342 2198 1246 333 287 155 0 chr12 4900373 4900502 -138885953 + MIR3 SINE MIR 58 206 -2 574 294 57 40 chr12 4902424 4902672 -138883783 + MLT1K LTR MaLR 330 581 -7 814 291 87 4 chr12 4903343 4903573 -138882882 - MIR SINE MIR -12 250 2 541 312 42 39 chr12 4904584 4904917 -138881538 - L3 LINE CR1 -1 1576 1243 349 314 8 8 chr12 4905082 4905206 -138881249 - L3 LINE CR1 -653 924 801 304 238 152 29 chr12 4905653 4905758 -138880697 - MIR3 SINE MIR -9 199 82 247 312 52 0 chr12 4906166 4906243 -138880212 + MIR SINE MIR 65 145 -117 238 356 20 27 chr12 4907313 4907462 -138878993 - MER5A DNA MER1_type -2 187 40 * 254 359 26 39 chr12 4907335 4907491 -138878964 + MER5A DNA MER1_type 36 189 0 204 345 18 0 chr12 4909535 4909590 -138876865 - MIR SINE MIR -123 85 30 291 261 232 22 chr12 4910125 4910263 -138876192 - MIR3 SINE MIR -36 172 6 1640 215 118 68 chr12 4910289 4910393 -138876062 + Charlie2b DNA MER1_type 1462 1559 -1303 362 19 0 39 chr12 4910393 4910445 -138876010 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 1640 215 118 68 chr12 4910445 4911530 -138874925 + Charlie2b DNA MER1_type 1559 2754 -28 189 0 0 0 chr12 4911532 4911553 -138874902 + (CAA)n Simple_repeat Simple_repeat 1 21 0 854 256 35 0 chr12 4912583 4912786 -138873669 - MIR SINE MIR -24 238 29 249 268 0 37 chr12 4914363 4914445 -138872010 + A-rich Low_complexity Low_complexity 2 80 0 315 0 0 0 chr12 4914827 4914862 -138871593 + (CA)n Simple_repeat Simple_repeat 2 36 0 32 0 0 0 chr12 4914937 4914969 -138871486 + AT_rich Low_complexity Low_complexity 1 32 0 450 265 201 31 chr12 4914985 4915497 -138870958 - L1ME4a LINE L1 -11 6110 5520 352 256 13 0 chr12 4915590 4915668 -138870787 + MER21B LTR ERV1 12 90 -773 1588 235 145 9 chr12 4915690 4916124 -138870331 + MER21B LTR ERV1 19 511 -352 368 274 142 0 chr12 4916307 4916420 -138870035 + L2 LINE L2 3137 3265 -7 422 291 20 33 chr12 4916730 4916881 -138869574 - MIR3 SINE MIR -13 195 47 216 297 0 14 chr12 4917081 4917155 -138869300 + L2 LINE L2 2978 3050 -222 198 0 0 0 chr12 4917446 4917468 -138868987 + (A)n Simple_repeat Simple_repeat 1 22 0 361 320 122 12 chr12 4918132 4918379 -138868076 - Charlie8 DNA MER1_type -2143 274 1 828 179 8 0 chr12 4918521 4918644 -138867811 - FLAM_C SINE Alu -9 124 1 2112 98 0 80 chr12 4918655 4918981 -138867474 - AluSx SINE Alu -12 300 1 356 315 139 12 chr12 4920833 4920998 -138865457 + MIR3 SINE MIR 16 201 -7 340 305 21 0 chr12 4921295 4921390 -138865065 + MIR3 SINE MIR 90 186 -22 183 278 0 0 chr12 4921685 4921721 -138864734 + L2 LINE L2 3103 3138 -134 1972 115 40 0 chr12 4922215 4922493 -138863962 + AluSq SINE Alu 1 289 -24 226 271 29 14 chr12 4922574 4922644 -138863811 + Charlie4 DNA MER1_type 1888 1958 -3 367 236 292 14 chr12 4922683 4922827 -138863628 + MER5A DNA MER1_type 4 187 -2 258 181 138 60 chr12 4923884 4924000 -138862455 + L3 LINE CR1 793 917 -660 609 279 94 35 chr12 4924256 4924575 -138861880 + L3 LINE CR1 1043 1380 -197 2027 229 122 18 chr12 4924767 4925388 -138861067 + MER76 LTR ERV 3 688 0 582 274 28 22 chr12 4926603 4926782 -138859673 + MIR SINE MIR 48 227 -35 191 187 55 66 chr12 4926795 4926886 -138859569 - L3b LINE CR1 -171 1412 1323 3808 107 71 0 chr12 4926968 4927520 -138858935 + L1MA2 LINE L1 5714 6304 0 916 199 0 11 chr12 4928505 4928686 -138857769 + FRAM SINE Alu 1 171 -5 275 232 0 0 chr12 4928709 4928765 -138857690 - MER113 DNA MER1_type? -462 59 4 614 254 129 0 chr12 4929683 4929876 -138856579 + MIR SINE MIR 6 223 -39 345 24 0 0 chr12 4929991 4930033 -138856422 + (TG)n Simple_repeat Simple_repeat 2 43 0 1481 152 118 37 chr12 4930531 4930801 -138855654 - AluJo SINE Alu -6 296 5 3218 28 3 0 chr12 4930956 4931315 -138855140 - L1PA4 LINE L1 -8 6147 5788 2565 63 0 0 chr12 4931884 4932186 -138854269 + AluY SINE Alu 1 302 -9 185 216 0 39 chr12 4932382 4932433 -138854022 - L3 LINE CR1 -3 1574 1526 * 220 221 39 78 chr12 4932421 4932498 -138853957 - L2 LINE L2 0 3272 3199 262 224 79 26 chr12 4932505 4932581 -138853874 + MER5A DNA MER1_type 108 187 -2 1295 100 0 0 chr12 4933044 4933214 -138853241 + AluSq SINE Alu 1 170 -143 711 162 0 0 chr12 4933498 4933603 -138852852 + AluSg/x SINE Alu 178 282 -30 327 104 0 0 chr12 4934252 4934300 -138852155 + (CATTT)n Simple_repeat Simple_repeat 3 50 0 2166 65 25 4 chr12 4934300 4934577 -138851878 - AluSp SINE Alu -30 283 1 1576 127 4 0 chr12 4934694 4934923 -138851532 + Tigger4(Zombi) DNA MER2_type 2502 2731 0 235 204 0 20 chr12 4934952 4935001 -138851454 + GA-rich Low_complexity Low_complexity 2 49 0 385 329 48 6 chr12 4936665 4936832 -138849623 - MIR3 SINE MIR -28 180 7 233 266 62 0 chr12 4937118 4937182 -138849273 + L2 LINE L2 2933 3000 -313 211 284 189 24 chr12 4937367 4937406 -138849049 + L2 LINE L2 3084 3115 -157 2377 92 3 0 chr12 4937406 4937744 -138848711 - AluSc SINE Alu 0 309 1 211 284 189 24 chr12 4937744 4937831 -138848624 + L2 LINE L2 3115 3231 -41 301 313 9 35 chr12 4937907 4938022 -138848433 + MIR SINE MIR 20 131 -131 567 258 58 111 chr12 4938037 4938604 -138847851 + L1MC2 LINE L1 700 1236 -4883 231 286 202 0 chr12 4938571 4938739 -138847716 + L1M4 LINE L1 4998 5199 -930 * 5583 188 36 16 chr12 4938744 4939370 -138847085 + L1MC2 LINE L1 4271 4883 -1444 694 203 31 8 chr12 4939370 4939498 -138846957 + FLAM_A SINE Alu 1 131 -2 5583 188 36 16 chr12 4939498 4940868 -138845587 + L1MC2 LINE L1 4883 6307 -20 1012 278 33 68 chr12 4940849 4941130 -138845325 + L1ME LINE L1 5166 5455 -723 * 2116 108 0 11 chr12 4941130 4941416 -138845039 + AluSc SINE Alu 1 283 -26 207 0 0 0 chr12 4941416 4941439 -138845016 + (CA)n Simple_repeat Simple_repeat 2 24 0 1012 278 33 68 chr12 4941439 4941719 -138844736 + L1ME LINE L1 5454 5700 -478 2011 131 0 7 chr12 4941719 4942010 -138844445 + AluSx SINE Alu 1 289 -23 1012 278 33 68 chr12 4942010 4942110 -138844345 + L1ME LINE L1 5700 5802 -376 2419 84 0 0 chr12 4942486 4942795 -138843660 - AluY SINE Alu -2 309 1 21 0 0 0 chr12 4942876 4942897 -138843558 + AT_rich Low_complexity Low_complexity 1 21 0 305 307 0 40 chr12 4942957 4943058 -138843397 + MIR SINE MIR 56 152 -110 200 292 143 6 chr12 4943927 4944088 -138842367 - MIR SINE MIR -6 256 74 2368 58 0 45 chr12 4944144 4944455 -138842000 + AluY SINE Alu 1 297 -14 245 222 321 12 chr12 4944462 4944543 -138841912 - MER5B DNA MER1_type -72 106 1 341 234 99 63 chr12 4944650 4944761 -138841694 + L2 LINE L2 3199 3313 0 267 368 8 0 chr12 4944777 4944894 -138841561 - L2 LINE L2 -5 3308 3191 851 136 35 0 chr12 4944896 4945065 -138841390 - MER33 DNA MER1_type 0 324 150 194 114 0 23 chr12 4945105 4945149 -138841306 + (TAAAA)n Simple_repeat Simple_repeat 5 47 0 424 213 200 27 chr12 4945152 4945302 -138841153 - MER33 DNA MER1_type -148 176 1 231 224 104 0 chr12 4945342 4945409 -138841046 - L2 LINE L2 -235 3078 3005 33 66 0 0 chr12 4946015 4946076 -138840379 + AT_rich Low_complexity Low_complexity 1 61 0 1774 155 41 10 chr12 4946474 4946648 -138839807 - AluJb SINE Alu -8 304 116 408 40 0 0 chr12 4946648 4946698 -138839757 + (TTA)n Simple_repeat Simple_repeat 2 51 0 1774 155 41 10 chr12 4946698 4946814 -138839641 - AluJb SINE Alu -196 116 5 903 109 0 0 chr12 4946978 4947097 -138839358 + FLAM_C SINE Alu 1 119 -24 442 258 39 62 chr12 4947134 4947312 -138839143 + MIR SINE MIR 49 222 -40 2459 88 0 0 chr12 4948053 4948360 -138838095 + AluSp SINE Alu 1 307 -6 237 328 52 72 chr12 4950552 4950802 -138835653 - L2 LINE L2 -684 2630 2386 2255 98 0 10 chr12 4950814 4951111 -138835344 + AluSx SINE Alu 5 298 -14 482 257 37 93 chr12 4951160 4951374 -138835081 + MIR3 SINE MIR 1 202 -6 353 344 31 0 chr12 4951997 4952125 -138834330 - L2 LINE L2 -4 3268 3137 32 57 0 0 chr12 4952402 4952455 -138834000 + AT_rich Low_complexity Low_complexity 1 53 0 572 149 0 9 chr12 4952466 4952580 -138833875 - L1MA4 LINE L1 -149 6151 6039 843 326 70 56 chr12 4952653 4953312 -138833143 - L3 LINE CR1 -4 1573 906 583 157 37 9 chr12 4954863 4954971 -138831484 + AluSq/x SINE Alu 1 111 -201 2387 56 0 0 chr12 4955002 4955289 -138831166 + AluSc SINE Alu 23 309 0 184 316 167 47 chr12 4955414 4955689 -138830766 - L2 LINE L2 -161 3111 2804 216 338 198 9 chr12 4955729 4956052 -138830403 - L2 LINE L2 -581 2733 2350 28 0 0 0 chr12 4958427 4958455 -138828000 + AT_rich Low_complexity Low_complexity 1 28 0 863 293 30 19 chr12 4958675 4958945 -138827510 + Charlie8 DNA MER1_type 4 276 -2141 182 400 43 14 chr12 4959490 4959630 -138826825 - L2 LINE L2 -338 2976 2833 719 232 98 31 chr12 4959912 4960166 -138826289 + L1ME4a LINE L1 5603 5873 -248 544 264 121 25 chr12 4960524 4960763 -138825692 - MIR SINE MIR 0 262 1 330 256 259 41 chr12 4961038 4961405 -138825050 - L2 LINE L2 -339 2975 2529 1184 180 0 9 chr12 4961697 4961908 -138824547 + MER3 DNA MER1_type 1 209 0 1774 173 90 22 chr12 4962254 4962654 -138823801 + MLT1D LTR MaLR 1 427 -78 466 315 43 16 chr12 4963217 4963401 -138823054 + MIR SINE MIR 23 211 -51 696 239 22 22 chr12 4963905 4964089 -138822366 + MIR SINE MIR 77 260 -2 24 53 0 0 chr12 4964546 4964584 -138821871 + AT_rich Low_complexity Low_complexity 1 38 0 272 177 146 52 chr12 4964642 4964738 -138821717 - L1ME4a LINE L1 -18 6103 5999 551 217 108 43 chr12 4964796 4965073 -138821382 - L1MC5 LINE L1 -46 7915 7621 389 266 28 37 chr12 4965080 4965227 -138821228 - L1MC5 LINE L1 -445 7516 7370 2337 97 3 0 chr12 4965227 4965525 -138820930 - AluSx SINE Alu -13 299 1 389 266 28 37 chr12 4965525 4965595 -138820860 - L1MC5 LINE L1 -591 7370 7301 2014 161 0 0 chr12 4965799 4966110 -138820345 + AluSx SINE Alu 1 311 -1 900 124 7 15 chr12 4966773 4966910 -138819545 - L1M3 LINE L1 -424 5747 5612 939 165 60 22 chr12 4966911 4967093 -138819362 - MER46A DNA MER2_type -1 235 47 392 274 78 0 chr12 4967158 4967260 -138819195 + L2 LINE L2 3202 3311 -2 24 53 0 0 chr12 4967339 4967377 -138819078 + AT_rich Low_complexity Low_complexity 1 38 0 202 295 65 36 chr12 4967442 4967581 -138818874 + L2 LINE L2 2701 2843 -471 223 421 19 0 chr12 4967642 4967749 -138818706 + L2 LINE L2 2942 3050 -222 21 0 0 0 chr12 4968534 4968555 -138817900 + AT_rich Low_complexity Low_complexity 1 21 0 646 299 56 21 chr12 4968793 4969027 -138817428 + MIR SINE MIR 7 248 -14 1819 160 14 0 chr12 4969375 4969668 -138816787 + AluJo SINE Alu 1 297 -15 22 35 0 0 chr12 4970826 4970855 -138815600 + AT_rich Low_complexity Low_complexity 1 29 0 244 220 68 17 chr12 4970878 4970937 -138815518 - L2 LINE L2 -9 3263 3202 5049 144 45 9 chr12 4971144 4972098 -138814357 - L1MB7 LINE L1 0 6184 5196 2160 116 7 3 chr12 4973378 4973679 -138812776 + AluSq SINE Alu 1 302 -11 41 66 0 0 chr12 4974920 4974996 -138811459 + AT_rich Low_complexity Low_complexity 1 76 0 1390 133 69 9 chr12 4975430 4975648 -138810807 - MER46A DNA MER2_type -5 231 1 1086 202 32 9 chr12 4975757 4975975 -138810480 - Charlie1a DNA MER1_type -907 548 326 1373 227 42 30 chr12 4976093 4976423 -138810032 - Charlie1a DNA MER1_type -1121 334 1 1346 297 95 25 chr12 4976444 4977056 -138809399 + L2 LINE L2 2306 2960 -354 280 277 89 30 chr12 4977311 4977412 -138809043 + MIR SINE MIR 6 112 -150 858 257 50 20 chr12 4978658 4978958 -138807497 - L1ME3 LINE L1 -264 5898 5590 342 338 81 68 chr12 4979253 4979891 -138806564 - L2 LINE L2 -8 3264 2622 26 50 0 0 chr12 4980914 4980954 -138805501 + AT_rich Low_complexity Low_complexity 1 40 0 473 296 45 75 chr12 4981242 4981345 -138805110 - MIR3 SINE MIR -10 198 102 791 232 27 16 chr12 4981345 4981530 -138804925 + MER5A DNA MER1_type 1 187 -2 473 296 45 75 chr12 4981530 4981625 -138804830 - MIR3 SINE MIR -106 102 6 1881 158 3 7 chr12 4982038 4982336 -138804119 + AluJb SINE Alu 3 299 -13 908 139 61 11 chr12 4982821 4983001 -138803454 + MER53 DNA DNA 1 189 0 301 213 106 0 chr12 4983104 4983198 -138803257 - HsTC2 DNA Tc2 0 1900 1797 342 342 84 8 chr12 4983224 4983461 -138802994 - L2 LINE L2 -1366 1948 1694 768 322 162 37 chr12 4983471 4984204 -138802251 - L2 LINE L2 -1731 1583 759 1698 144 101 15 chr12 4984208 4984532 -138801923 - MER83 LTR ERV1 0 448 97 1146 74 217 0 chr12 4984532 4984721 -138801734 + MER30 DNA MER1_type 1 230 0 851 39 0 0 chr12 4984723 4984825 -138801630 - MER83 LTR ERV1 -346 102 1 314 315 39 62 chr12 4984837 4985097 -138801358 - L2 LINE L2 -2571 743 490 634 263 202 3 chr12 4987133 4987360 -138799095 - MIR SINE MIR -11 251 1 390 21 0 0 chr12 4987795 4987842 -138798613 + (TG)n Simple_repeat Simple_repeat 2 48 0 2345 98 0 0 chr12 4989884 4990179 -138796276 - AluSx SINE Alu -17 295 1 931 201 31 35 chr12 4990347 4990576 -138795879 - L1ME3A LINE L1 -5 6165 5938 22 0 0 0 chr12 4991045 4991067 -138795388 + AT_rich Low_complexity Low_complexity 1 22 0 244 264 107 14 chr12 4991805 4991945 -138794510 - L2 LINE L2 -71 3242 3090 237 269 0 125 chr12 4992208 4992312 -138794143 + L2 LINE L2 3182 3272 0 316 238 75 0 chr12 4992517 4992597 -138793858 - MER112 DNA MER1_type -174 86 1 361 102 65 32 chr12 4992642 4992705 -138793750 + AluSp/q SINE Alu 234 295 -8 5579 41 2 5 chr12 4992764 4993397 -138793058 - L1PA5 LINE L1 0 6154 5524 501 198 52 13 chr12 4993619 4993751 -138792704 - L1ME1 LINE L1 0 7129 6836 2460 195 67 27 chr12 4993761 4994325 -138792130 - L1ME1 LINE L1 -205 6756 6170 1291 177 59 20 chr12 4994331 4994504 -138791951 - L1ME1 LINE L1 -839 6102 5910 1755 174 48 3 chr12 4994504 4994820 -138791635 - L1MC1 LINE L1 -3 6330 6001 1291 177 59 20 chr12 4994820 4994951 -138791504 - L1ME1 LINE L1 -1031 5910 5786 180 0 0 0 chr12 4995021 4995041 -138791414 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 278 242 0 0 chr12 4995041 4995103 -138791352 - L1ME1 LINE L1 -2458 4483 4422 607 218 82 20 chr12 4995130 4995356 -138791099 - L1ME1 LINE L1 -4887 1536 1326 2120 100 0 31 chr12 4995371 4995660 -138790795 - AluSg SINE Alu -30 280 1 323 217 152 0 chr12 4995662 4995754 -138790701 - L1ME1 LINE L1 -5072 1351 1246 1135 93 20 0 chr12 4995960 4996110 -138790345 - L1PB1 LINE L1 0 6151 5999 575 260 60 89 chr12 4996131 4996446 -138790009 - L1ME1 LINE L1 -5267 1156 851 1666 199 65 3 chr12 4996452 4996804 -138789651 - L1ME1 LINE L1 -5954 469 96 1505 144 129 8 chr12 4996804 4997068 -138789387 - MER1B DNA MER1_type 0 339 44 30 0 0 0 chr12 4998015 4998045 -138788410 + AT_rich Low_complexity Low_complexity 1 30 0 865 136 0 0 chr12 4998045 4998163 -138788292 - FLAM_C SINE Alu -25 118 1 264 30 0 0 chr12 4998999 4999032 -138787423 + (TC)n Simple_repeat Simple_repeat 2 34 0 207 0 0 0 chr12 4999031 4999054 -138787401 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 23 86 0 0 chr12 4999117 4999175 -138787280 + AT_rich Low_complexity Low_complexity 1 58 0 3831 94 37 2 chr12 4999859 5000378 -138786077 - L1PA11 LINE L1 0 6174 5638 3282 169 77 29 chr12 5000773 5001475 -138784980 - L1MA9 LINE L1 -1 6311 5576 1112 31 0 8 chr12 5001644 5001773 -138784682 - L1PA3 LINE L1 0 6155 6028 216 67 0 0 chr12 5001831 5001861 -138784594 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 43634 32 26 2 chr12 5001861 5007843 -138778612 - L1PA2 LINE L1 -24 6131 1 2118 144 3 0 chr12 5007969 5008275 -138778180 - AluSx SINE Alu -4 308 2 1189 262 42 42 chr12 5008873 5009304 -138777151 - L1MC4a LINE L1 -1842 5966 5536 1453 146 106 17 chr12 5010518 5010819 -138775636 - LTR56 LTR ERV1 -117 328 1 2378 86 3 3 chr12 5010931 5011234 -138775221 + AluSp SINE Alu 1 303 -10 202 315 63 45 chr12 5011390 5011501 -138774954 - MIR SINE MIR -142 120 8 2429 146 3 11 chr12 5012201 5012570 -138773885 - MER47A DNA MER2_type 0 366 1 488 270 117 0 chr12 5012750 5012913 -138773542 - L1ME LINE L1 -404 5717 5536 4033 187 71 35 chr12 5013184 5013230 -138773225 - MER21B LTR ERV1 -32 831 788 441 0 0 0 chr12 5013230 5013279 -138773176 + (TG)n Simple_repeat Simple_repeat 2 50 0 4033 187 71 35 chr12 5013279 5013681 -138772774 - MER21B LTR ERV1 -75 788 402 3151 108 35 15 chr12 5013681 5013704 -138772751 + MER4C LTR ERV1 1 22 -443 2447 87 0 3 chr12 5013704 5014015 -138772440 + AluY SINE Alu 1 310 -1 3151 108 35 15 chr12 5014015 5014446 -138772009 + MER4C LTR ERV1 22 464 -1 4033 187 71 35 chr12 5014446 5014706 -138771749 - MER21B LTR ERV1 -461 402 87 1587 161 113 0 chr12 5014706 5014980 -138771475 + AluJb SINE Alu 2 306 -6 4033 187 71 35 chr12 5014980 5015071 -138771384 - MER21B LTR ERV1 -776 87 1 1010 258 16 12 chr12 5015382 5015638 -138770817 + MIR SINE MIR 6 262 0 462 319 126 40 chr12 5015919 5016687 -138769768 - L2 LINE L2 -5 3267 2365 227 336 26 0 chr12 5016735 5016848 -138769607 + L1ME LINE L1 5352 5467 -654 666 0 0 0 chr12 5017605 5017679 -138768776 + (CCA)n Simple_repeat Simple_repeat 2 75 0 271 229 0 0 chr12 5018064 5018125 -138768330 - L1ME LINE L1 -520 5644 5584 * 441 226 105 0 chr12 5018120 5018184 -138768271 - L1ME LINE L1 -3485 2661 2605 2797 192 79 29 chr12 5018184 5018778 -138767677 + MLT1E2 LTR MaLR 1 624 -2 441 226 105 0 chr12 5018778 5018894 -138767561 - L1ME LINE L1 -3541 2605 2462 881 159 0 14 chr12 5018936 5019081 -138767374 - FLAM_C SINE Alu 0 143 1 2425 154 130 0 chr12 5019082 5019497 -138766958 - LTR44 LTR ERV1 -26 493 25 2325 85 7 0 chr12 5019499 5019792 -138766663 + AluSg SINE Alu 1 295 -15 733 192 6 144 chr12 5019834 5020086 -138766369 - L1ME LINE L1 -3680 2466 2264 1083 133 0 0 chr12 5020086 5020236 -138766219 + L1PA15 LINE L1 6013 6162 -3 733 192 6 144 chr12 5020236 5020296 -138766159 - L1ME LINE L1 -3882 2264 2197 511 184 0 0 chr12 5020304 5020391 -138766064 - MER58B DNA MER1_type 0 341 255 2717 166 127 31 chr12 5020425 5020514 -138765941 + L1MCa LINE L1 7 86 -6340 2444 75 0 3 chr12 5020514 5020822 -138765633 + AluSg SINE Alu 1 307 -3 2717 166 127 31 chr12 5020822 5021305 -138765150 + L1MCa LINE L1 86 634 -5792 4613 149 27 20 chr12 5021324 5022187 -138764268 + L1MCa LINE L1 834 1794 -4632 7728 219 31 77 chr12 5022198 5024086 -138762369 + L1MCa LINE L1 2684 4657 -1769 1454 35 0 99 chr12 5024086 5024288 -138762167 + L1PA3 LINE L1 5974 6155 0 7728 219 31 77 chr12 5024288 5024843 -138761612 + L1MCa LINE L1 4657 5010 -1416 2197 122 0 19 chr12 5024843 5025155 -138761300 - AluSx SINE Alu -6 306 1 7728 219 31 77 chr12 5025155 5025242 -138761213 + L1MCa LINE L1 5010 5099 -1327 198 103 0 0 chr12 5025587 5025616 -138760839 + (CAA)n Simple_repeat Simple_repeat 2 30 0 383 349 42 12 chr12 5026268 5026434 -138760021 + MIR SINE MIR 86 256 -6 574 198 127 24 chr12 5026548 5026674 -138759781 - FLAM_A SINE Alu -3 139 1 276 267 20 30 chr12 5027373 5027474 -138758981 - L1ME4a LINE L1 -55 6066 5967 608 222 2 19 chr12 5027540 5027680 -138758775 - L1MD3 LINE L1 -1109 6883 6717 381 75 0 0 chr12 5028727 5028780 -138757675 + (TG)n Simple_repeat Simple_repeat 2 54 0 1447 185 24 31 chr12 5028780 5029067 -138757388 - AluJb SINE Alu -27 285 1 407 274 213 5 chr12 5029108 5029305 -138757150 - MIR SINE MIR -5 257 20 242 296 0 20 chr12 5029381 5029479 -138756976 - L1ME4a LINE L1 -335 5786 5691 729 197 0 0 chr12 5029560 5029677 -138756778 + AluJo/FLAM SINE Alu 2 118 -194 2196 124 0 0 chr12 5029677 5029983 -138756472 - AluY SINE Alu -5 306 1 27 0 0 0 chr12 5029988 5030015 -138756440 + AT_rich Low_complexity Low_complexity 1 27 0 207 100 0 0 chr12 5030071 5030101 -138756354 + (CA)n Simple_repeat Simple_repeat 2 31 0 321 317 46 42 chr12 5030245 5030416 -138756039 + MER5A DNA MER1_type 20 178 0 23 0 0 0 chr12 5030617 5030640 -138755815 + AT_rich Low_complexity Low_complexity 1 23 0 364 183 37 90 chr12 5030851 5030989 -138755466 - L1MC4 LINE L1 -1 8037 7685 357 150 1 68 chr12 5031115 5031262 -138755193 - L1MD2 LINE L1 -97 7711 6055 * 6903 174 139 98 chr12 5031260 5031977 -138754478 - L1MDa LINE L1 -4204 2336 1650 2162 112 6 34 chr12 5031977 5032299 -138754156 - AluSq SINE Alu 0 313 1 6903 174 139 98 chr12 5032299 5032774 -138753681 - L1MDa LINE L1 -4890 1650 1196 2004 143 0 7 chr12 5032774 5033068 -138753387 - AluJb SINE Alu -15 297 6 6903 174 139 98 chr12 5033068 5033089 -138753366 - L1MDa LINE L1 -5344 1196 1177 841 121 0 38 chr12 5033089 5033221 -138753234 - FLAM_C SINE Alu -16 127 1 6903 174 139 98 chr12 5033221 5034116 -138752339 - L1MDa LINE L1 -5363 1177 3 2299 95 0 6 chr12 5034118 5034433 -138752022 - AluSq SINE Alu 0 313 1 4750 29 41 39 chr12 5035484 5036070 -138750385 - LTR14C LTR ERVK 0 587 1 7785 75 2 3 chr12 5036707 5037676 -138748779 - LTR5 LTR ERVK 0 969 2 421 198 51 108 chr12 5037772 5037929 -138748526 + MIR SINE MIR 28 175 -87 347 292 7 52 chr12 5038290 5038510 -138747945 + GA-rich Low_complexity Low_complexity 1 209 0 2649 46 3 0 chr12 5039345 5039652 -138746803 + AluY SINE Alu 1 308 -3 340 239 11 45 chr12 5040338 5040426 -138746029 + MER91 DNA MER1_type 57 141 -55 237 350 0 0 chr12 5040486 5040546 -138745909 + MER91 DNA MER1_type 131 190 0 357 293 53 23 chr12 5040884 5041017 -138745438 - MER5A DNA MER1_type 0 189 53 * 403 253 53 11 chr12 5040929 5041024 -138745431 + MER5A DNA MER1_type 56 154 -35 2616 63 0 0 chr12 5041027 5041330 -138745125 - AluSg SINE Alu -7 303 1 276 336 16 33 chr12 5041587 5041709 -138744746 - MER5A DNA MER1_type -68 121 2 271 82 131 49 chr12 5042590 5042651 -138743804 - MIR SINE MIR -66 142 77 195 252 35 78 chr12 5042651 5042705 -138743750 + L2 LINE L2 1396 1505 -1809 4680 191 28 27 chr12 5042812 5044637 -138741818 - L1MB8 LINE L1 0 6178 4351 * 8180 167 51 15 chr12 5044623 5046332 -138740123 - L1MA6 LINE L1 0 6300 4478 2124 54 104 4 chr12 5046332 5046612 -138739843 - AluY SINE Alu -3 308 1 8180 167 51 15 chr12 5046612 5047327 -138739128 - L1MA6 LINE L1 -1822 4478 3790 822 238 29 0 chr12 5047361 5047533 -138738922 - MER45A DNA AcHobo 0 178 2 441 152 0 0 chr12 5047888 5047954 -138738501 - MER3 DNA MER1_type 0 209 144 441 152 0 0 chr12 5048057 5048123 -138738332 - MER3 DNA MER1_type 0 209 144 415 182 0 0 chr12 5048226 5048292 -138738163 - MER3 DNA MER1_type 0 209 144 415 182 0 0 chr12 5048395 5048461 -138737994 - MER3 DNA MER1_type 0 209 144 1017 218 35 0 chr12 5048564 5048766 -138737689 - MER3 DNA MER1_type 0 209 1 461 327 82 14 chr12 5049240 5049460 -138736995 + L2 LINE L2 2181 2415 -899 192 328 16 0 chr12 5049551 5049615 -138736840 - MIR SINE MIR -47 215 151 205 179 0 0 chr12 5049616 5049655 -138736800 + (CTA)n Simple_repeat Simple_repeat 1 39 0 357 259 191 38 chr12 5049797 5049928 -138736527 + MER5A DNA MER1_type 33 183 -6 307 363 8 0 chr12 5050072 5050196 -138736259 + L2 LINE L2 2624 2748 -566 2571 266 35 65 chr12 5050625 5051634 -138734821 + L1M4b LINE L1 12 1214 -5645 254 255 0 0 chr12 5051805 5051852 -138734603 + L1M4 LINE L1 915 961 -5894 * 260 229 0 0 chr12 5051826 5051874 -138734581 + L1M4 LINE L1 1177 1224 -5635 224 119 0 24 chr12 5052046 5052088 -138734367 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 1495 235 35 47 chr12 5052101 5052565 -138733890 + L1M4 LINE L1 1217 1674 -5185 3159 154 65 28 chr12 5052565 5053086 -138733369 + L1MCa LINE L1 20 565 -5861 1478 209 72 49 chr12 5053086 5053473 -138732982 + MSTD LTR MaLR 1 396 0 3159 154 65 28 chr12 5053473 5053521 -138732934 + L1MCa LINE L1 565 610 -5816 228 214 0 0 chr12 5053526 5053568 -138732887 + L1MCa LINE L1 570 611 -5815 1964 179 71 15 chr12 5053598 5054063 -138732392 + L1M4 LINE L1 4840 5330 -816 339 183 84 0 chr12 5054070 5054141 -138732314 + L1MA10 LINE L1 6180 6256 -78 206 316 0 0 chr12 5054173 5054230 -138732225 + MIR SINE MIR 201 257 -5 24 32 0 0 chr12 5054596 5054627 -138731828 + AT_rich Low_complexity Low_complexity 1 31 0 324 345 70 6 chr12 5054937 5055108 -138731347 - MIR SINE MIR -49 213 32 2286 102 0 10 chr12 5055129 5055443 -138731012 - AluY SINE Alu 0 311 1 381 320 85 25 chr12 5055676 5055876 -138730579 + MIR SINE MIR 14 225 -37 * 785 237 14 50 chr12 5055874 5055901 -138730554 - MIR SINE MIR -44 218 192 2158 134 0 0 chr12 5055901 5056200 -138730255 - AluSq SINE Alu -14 299 1 785 237 14 50 chr12 5056200 5056391 -138730064 - MIR SINE MIR -70 192 8 303 311 67 15 chr12 5056482 5056617 -138729838 + L3b LINE CR1 1319 1460 -123 220 333 31 10 chr12 5056932 5057028 -138729427 + MIR3 SINE MIR 62 159 -49 551 253 40 13 chr12 5057488 5057638 -138728817 + MIR SINE MIR 72 225 -37 209 266 62 0 chr12 5057895 5057959 -138728496 - L2 LINE L2 -1 3312 3245 676 153 53 46 chr12 5058492 5058623 -138727832 - AluJo SINE Alu -176 136 5 695 229 21 21 chr12 5059067 5059255 -138727200 + MIR SINE MIR 10 197 -65 246 114 0 0 chr12 5059712 5059747 -138726708 + MIR SINE MIR 204 238 -24 410 314 43 22 chr12 5060337 5060522 -138725933 + MIR3 SINE MIR 10 198 -10 192 397 0 0 chr12 5061470 5061548 -138724907 - L2 LINE L2 -197 3075 2998 919 148 0 15 chr12 5062253 5062388 -138724067 + FLAM_C SINE Alu 1 133 0 7565 201 36 12 chr12 5062550 5065655 -138720800 - L1MA2 LINE L1 0 7723 4540 5070 86 32 10 chr12 5065655 5066339 -138720116 - L1PA13 LINE L1 0 6163 5465 2599 147 2 0 chr12 5066339 5066761 -138719694 + L1P LINE L1 4726 5148 -998 * 20544 155 49 18 chr12 5066757 5071155 -138715300 - L1MA2 LINE L1 -3012 4553 19 240 295 121 27 chr12 5071284 5071564 -138714891 - MLT1I LTR MaLR -33 376 103 183 320 100 30 chr12 5071768 5071868 -138714587 + MIR SINE MIR 13 119 -143 221 288 34 0 chr12 5071872 5071931 -138714524 + L2 LINE L2 3238 3298 -15 2051 145 32 42 chr12 5072338 5072717 -138713738 + THE1C LTR MaLR 1 375 0 886 258 31 16 chr12 5072863 5073214 -138713241 - MLT1J LTR MaLR -31 480 77 183 286 0 0 chr12 5073865 5073907 -138712548 - L2 LINE L2 -16 3256 3215 314 219 16 0 chr12 5073920 5073984 -138712471 + MIR SINE MIR 43 107 -155 288 0 0 0 chr12 5074083 5074115 -138712340 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 360 0 0 0 chr12 5074114 5074154 -138712301 + (GA)n Simple_repeat Simple_repeat 1 40 0 2295 107 3 0 chr12 5074253 5074552 -138711903 - AluSx SINE Alu -12 300 1 228 291 18 18 chr12 5074968 5075023 -138711432 - MIR SINE MIR -188 74 20 2569 192 92 31 chr12 5075490 5076046 -138710409 - MLT1E LTR MaLR -3 590 1 646 233 70 57 chr12 5076770 5076998 -138709457 - MIR SINE MIR -30 232 2 487 157 209 52 chr12 5077085 5077200 -138709255 - FLAM_C SINE Alu 0 133 1 2990 123 14 2 chr12 5078252 5078681 -138707774 - MER57B LTR ERV1 0 434 1 2450 72 0 28 chr12 5080008 5080328 -138706127 - AluY SINE Alu 0 311 1 245 233 50 0 chr12 5080469 5080529 -138705926 - MIR SINE MIR -107 101 39 216 0 0 0 chr12 5080829 5080853 -138705602 + (T)n Simple_repeat Simple_repeat 1 24 0 316 143 54 0 chr12 5081036 5081133 -138705322 - AluSg SINE Alu 0 321 222 1603 115 34 26 chr12 5081312 5081546 -138704909 - AluSg SINE Alu -73 237 2 519 327 12 0 chr12 5081774 5081939 -138704516 + MIR SINE MIR 95 261 -1 427 282 107 43 chr12 5081985 5082265 -138704190 + L3 LINE CR1 799 1096 -481 616 310 99 58 chr12 5082484 5082878 -138703577 + L2 LINE L2 2862 3271 -1 420 305 17 77 chr12 5082944 5083177 -138703278 + L3 LINE CR1 1267 1485 -92 209 329 13 0 chr12 5083306 5083385 -138703070 + MIR SINE MIR 183 262 0 25 0 0 0 chr12 5083464 5083489 -138702966 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr12 5083841 5083869 -138702586 + AT_rich Low_complexity Low_complexity 1 28 0 412 276 85 92 chr12 5084725 5085159 -138701296 + L1ME4a LINE L1 5501 5931 -190 36 40 0 0 chr12 5085163 5085213 -138701242 + AT_rich Low_complexity Low_complexity 1 50 0 2275 112 0 10 chr12 5085493 5085807 -138700648 + AluSx SINE Alu 1 311 -1 454 333 86 25 chr12 5086013 5086211 -138700244 - MIR SINE MIR -5 257 48 339 321 28 0 chr12 5087292 5087398 -138699057 - MIR SINE MIR -128 134 26 2915 212 107 26 chr12 5089466 5090345 -138696110 + L1MC4a LINE L1 5329 5535 -643 1035 205 107 29 chr12 5090361 5090605 -138695850 + L1MC4 LINE L1 6754 7016 -1026 * 2376 173 60 24 chr12 5090603 5091101 -138695354 + L1MC4 LINE L1 7355 7870 -172 193 206 14 14 chr12 5091110 5091183 -138695272 + (TGGA)n Simple_repeat Simple_repeat 4 76 0 511 164 100 79 chr12 5091194 5091334 -138695121 + L1MC4 LINE L1 7900 8042 0 3442 219 28 28 chr12 5093295 5094117 -138692338 - MER99 DNA DNA -5 823 2 465 283 85 40 chr12 5097654 5097877 -138688578 - L1ME4a LINE L1 0 6121 5889 2270 77 0 7 chr12 5097877 5098174 -138688281 - AluY SINE Alu -16 295 1 1493 146 49 42 chr12 5098174 5098461 -138687994 - AluJo SINE Alu -7 305 17 511 308 73 13 chr12 5098856 5099064 -138687391 - MIR SINE MIR -1 261 43 925 137 0 0 chr12 5099154 5099285 -138687170 + FLAM_C SINE Alu 2 132 -1 1045 191 5 19 chr12 5099361 5099576 -138686879 - MER51C LTR ERV1 0 640 429 21 57 0 0 chr12 5099877 5099912 -138686543 + AT_rich Low_complexity Low_complexity 1 35 0 199 290 140 21 chr12 5100526 5100619 -138685836 + L2 LINE L2 3167 3270 -2 784 215 91 94 chr12 5100652 5101024 -138685431 - MLT1D LTR MaLR -134 371 1 254 296 231 22 chr12 5101084 5101405 -138685050 - L2 LINE L2 -16 3256 2869 188 317 58 8 chr12 5101446 5101566 -138684889 - L2 LINE L2 -467 2847 2722 505 267 27 20 chr12 5101974 5102120 -138684335 + MIR SINE MIR 1 147 -115 1377 266 58 28 chr12 5102120 5102549 -138683906 - MLT1J2 LTR MaLR 0 450 9 186 324 40 14 chr12 5102571 5102645 -138683810 + MIR SINE MIR 166 241 -21 224 30 30 0 chr12 5102648 5102681 -138683774 + (TG)n Simple_repeat Simple_repeat 1 34 0 303 309 55 9 chr12 5104276 5104386 -138682069 + MIR SINE MIR 47 161 -101 340 292 32 42 chr12 5104558 5104719 -138681736 + MIR SINE MIR 31 184 -60 2170 106 0 7 chr12 5105050 5105353 -138681102 - AluSx SINE Alu -11 301 1 1634 139 52 14 chr12 5105415 5105793 -138680662 + AluJb SINE Alu 1 389 0 477 230 86 33 chr12 5105853 5106005 -138680450 - L2 LINE L2 -2 3311 3152 4199 179 61 45 chr12 5106005 5106133 -138680322 + L1MB8 LINE L1 4915 5039 -1139 1899 146 0 16 chr12 5106133 5106468 -138679987 + AluSx SINE Alu 1 312 0 4199 179 61 45 chr12 5106468 5107585 -138678870 + L1MB8 LINE L1 5039 6178 0 918 237 158 73 chr12 5107585 5108086 -138678369 - L2 LINE L2 -151 3162 2598 719 261 65 15 chr12 5108086 5108285 -138678170 + MER63A DNA MER1_type 2 210 0 918 237 158 73 chr12 5108285 5108366 -138678089 - L2 LINE L2 -715 2598 2525 472 328 48 11 chr12 5108433 5108622 -138677833 - MER91A DNA MER1_type 0 196 1 211 313 146 28 chr12 5108622 5108759 -138677696 - MIR SINE MIR -84 178 25 233 264 26 0 chr12 5109059 5109141 -138677314 - MIR SINE MIR -81 127 42 260 302 69 35 chr12 5109311 5109427 -138677028 - L2 LINE L2 -1 3271 3152 315 213 0 0 chr12 5110083 5110158 -138676297 + (TG)n Simple_repeat Simple_repeat 2 76 0 293 239 15 0 chr12 5110289 5110356 -138676099 + MIR SINE MIR 48 115 -147 720 229 86 24 chr12 5110362 5110572 -138675883 - MLT1G LTR MaLR -4 586 364 275 152 0 0 chr12 5110604 5110650 -138675805 - MLT2A2 LTR ERVL -2 451 406 3051 104 17 7 chr12 5110686 5111100 -138675355 - MLT2A2 LTR ERVL -35 418 1 502 307 64 0 chr12 5111133 5111273 -138675182 + L2 LINE L2 3123 3271 -1 302 296 157 15 chr12 5112120 5112283 -138674172 - MIR3 SINE MIR -3 205 22 332 119 17 0 chr12 5114098 5114157 -138672298 + CT-rich Low_complexity Low_complexity 1 60 0 293 322 85 0 chr12 5114361 5114479 -138671976 - L2 LINE L2 -2 3270 3143 279 366 85 18 chr12 5114558 5114722 -138671733 + MIR3 SINE MIR 30 204 -4 290 224 104 0 chr12 5114998 5115065 -138671390 - tRNA-Glu-GAG tRNA tRNA 0 75 2 861 145 34 62 chr12 5115188 5115367 -138671088 - AluJo SINE Alu -24 288 115 395 274 42 2 chr12 5115368 5115539 -138670916 + MIR SINE MIR 45 260 -2 1024 287 87 21 chr12 5115947 5116327 -138670128 - MLT1I LTR MaLR -2 407 3 2055 118 10 0 chr12 5117959 5118255 -138668200 - AluSc SINE Alu -10 299 1 1114 289 27 27 chr12 5118297 5118702 -138667753 - MLT1I LTR MaLR -4 405 1 288 0 0 0 chr12 5119280 5119312 -138667143 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr12 5119908 5119932 -138666523 + (CA)n Simple_repeat Simple_repeat 1 24 0 1436 301 101 48 chr12 5120215 5121131 -138665324 + L2 LINE L2 2014 3014 -299 2008 125 0 0 chr12 5121131 5121418 -138665037 - AluSx SINE Alu -25 287 1 1436 301 101 48 chr12 5121418 5121735 -138664720 + L2 LINE L2 3014 3313 0 493 235 61 0 chr12 5122891 5123023 -138663432 + LTR43 LTR ERV1 169 308 -294 274 211 35 0 chr12 5123900 5123957 -138662498 + MIR SINE MIR 204 262 0 24 0 0 0 chr12 5128598 5128622 -138657833 + AT_rich Low_complexity Low_complexity 1 24 0 278 242 68 83 chr12 5128690 5128822 -138657633 + MIR SINE MIR 42 171 -91 258 373 12 6 chr12 5130499 5130660 -138655795 + CT-rich Low_complexity Low_complexity 1 162 0 248 254 120 74 chr12 5131008 5131225 -138655230 + L3b LINE CR1 1115 1341 -242 262 239 0 57 chr12 5131424 5131512 -138654943 + L1MB8 LINE L1 6035 6117 -61 480 18 0 0 chr12 5131726 5131783 -138654672 + (TG)n Simple_repeat Simple_repeat 1 57 0 23 54 0 0 chr12 5132111 5132148 -138654307 + AT_rich Low_complexity Low_complexity 1 37 0 299 383 25 41 chr12 5133696 5133892 -138652563 + MIR SINE MIR 20 212 -50 189 0 0 0 chr12 5134081 5134102 -138652353 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 209 146 21 0 chr12 5134426 5134474 -138651981 + (TTA)n Simple_repeat Simple_repeat 3 51 0 407 319 135 5 chr12 5134480 5134665 -138651790 - MIR SINE MIR -12 250 42 527 274 128 0 chr12 5135411 5135575 -138650880 + MIR SINE MIR 8 192 -70 371 303 29 67 chr12 5135585 5135749 -138650706 + MIR SINE MIR 6 161 -65 875 300 130 26 chr12 5135918 5136602 -138649853 - L2 LINE L2 -4 3309 2549 842 272 98 0 chr12 5137486 5137710 -138648745 - MIR SINE MIR -1 261 16 223 324 78 0 chr12 5138358 5138460 -138647995 + L2 LINE L2 2687 2796 -518 419 266 106 55 chr12 5138859 5139058 -138647397 + MLT1K LTR MaLR 363 571 -17 227 252 154 21 chr12 5139349 5139492 -138646963 - LTR33 LTR ERVL -163 358 197 435 218 0 0 chr12 5139709 5139796 -138646659 + LTR33 LTR ERVL 434 520 -1 202 250 125 0 chr12 5139937 5140001 -138646454 - MIR SINE MIR -103 105 34 612 291 23 0 chr12 5140421 5140593 -138645862 + MIR3 SINE MIR 30 205 -3 1757 195 58 6 chr12 5140905 5141249 -138645206 + MLT1A1 LTR MaLR 1 362 -3 209 275 38 25 chr12 5142809 5142889 -138643566 + GA-rich Low_complexity Low_complexity 4 84 0 * 300 329 153 14 chr12 5142843 5142977 -138643478 + HAL1 LINE L1 1106 1220 -1287 228 254 0 0 chr12 5142977 5143036 -138643419 + A-rich Low_complexity Low_complexity 1 59 0 300 329 153 14 chr12 5143036 5143059 -138643396 + HAL1 LINE L1 1220 1351 -1156 181 388 104 0 chr12 5143156 5143290 -138643165 + MIR3 SINE MIR 37 184 -24 780 226 32 36 chr12 5143894 5144115 -138642340 + MIR SINE MIR 29 248 -14 375 23 0 0 chr12 5146076 5146120 -138640335 + (CA)n Simple_repeat Simple_repeat 1 44 0 340 261 48 11 chr12 5146874 5147039 -138639416 - MIR SINE MIR -4 258 12 372 365 41 15 chr12 5148053 5148393 -138638062 - L3b LINE CR1 -92 1491 1143 1041 189 34 5 chr12 5148510 5148716 -138637739 - MER20 DNA MER1_type 0 219 8 41 58 0 0 chr12 5150036 5150105 -138636350 + AT_rich Low_complexity Low_complexity 1 69 0 21 36 0 0 chr12 5151887 5151915 -138634540 + AT_rich Low_complexity Low_complexity 1 28 0 362 100 17 0 chr12 5152187 5152247 -138634208 + (GGGGA)n Simple_repeat Simple_repeat 3 63 0 2158 110 3 0 chr12 5152362 5152684 -138633771 - AluSx SINE Alu 0 323 1 183 143 29 0 chr12 5152761 5152796 -138633659 - MIR3 SINE MIR -49 159 124 2583 150 31 0 chr12 5154087 5154500 -138631955 + MSTB LTR MaLR 1 426 0 2201 95 7 0 chr12 5154577 5154860 -138631595 + AluSg SINE Alu 2 286 -24 22 0 0 0 chr12 5154860 5154882 -138631573 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chr12 5154922 5154947 -138631508 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2387 176 170 29 chr12 5154993 5155612 -138630843 + L1MB7 LINE L1 5454 6159 -25 321 356 65 40 chr12 5155732 5156007 -138630448 - L2 LINE L2 -2 3270 2989 232 320 115 0 chr12 5156758 5156880 -138629575 - MIR SINE MIR -8 254 119 1935 109 12 0 chr12 5157671 5157928 -138628527 - AluSq SINE Alu -53 260 1 364 223 161 18 chr12 5158533 5158645 -138627810 + MIR3 SINE MIR 15 142 -66 613 330 95 46 chr12 5159153 5160191 -138626264 + L2 LINE L2 2170 3271 -1 954 276 165 13 chr12 5160330 5160824 -138625631 + L2 LINE L2 2696 3264 -49 260 266 137 65 chr12 5161410 5161688 -138624767 - L2 LINE L2 -109 3163 2866 2204 109 10 19 chr12 5162558 5162871 -138623584 - AluSg SINE Alu 0 310 1 421 290 73 38 chr12 5162933 5163361 -138623094 + L2 LINE L2 2627 3079 -193 1255 211 102 5 chr12 5163798 5164177 -138622278 + MER63 DNA MER1_type 8 1060 0 2258 76 7 40 chr12 5164801 5165102 -138621353 + AluSg1 SINE Alu 1 291 -18 23 78 0 0 chr12 5165680 5165731 -138620724 + AT_rich Low_complexity Low_complexity 1 51 0 397 254 25 16 chr12 5166567 5166689 -138619766 - MIR3 SINE MIR -79 129 7 288 137 0 0 chr12 5167317 5167368 -138619087 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 943 254 65 7 chr12 5167764 5168040 -138618415 + MLT1C LTR MaLR 124 415 -52 849 47 0 0 chr12 5168044 5168150 -138618305 + (GAA)n Simple_repeat Simple_repeat 3 108 0 271 363 20 36 chr12 5168817 5169068 -138617387 + L3 LINE CR1 497 743 -834 219 234 0 0 chr12 5171172 5171219 -138615236 + L3 LINE CR1 1530 1576 -1 1718 182 24 0 chr12 5172254 5172551 -138613904 - AluJb SINE Alu -4 308 5 1206 258 81 15 chr12 5174326 5174722 -138611733 + LTR16A LTR ERVL 23 444 -6 1995 38 8 0 chr12 5174731 5174970 -138611485 - L1PA4 LINE L1 0 6155 5915 244 53 53 26 chr12 5175059 5175097 -138611358 - L1PA4 LINE L1 -280 5875 5837 1753 196 0 3 chr12 5176122 5176423 -138610032 - AluJb SINE Alu -11 301 2 25 0 0 0 chr12 5179092 5179117 -138607338 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr12 5179203 5179232 -138607223 + AT_rich Low_complexity Low_complexity 1 29 0 198 217 104 87 chr12 5179781 5179853 -138606602 - MIR SINE MIR -59 203 127 2100 131 7 0 chr12 5179853 5180150 -138606305 + AluSx SINE Alu 1 299 -13 198 217 104 87 chr12 5180150 5180192 -138606263 - MIR SINE MIR -135 127 87 218 150 50 0 chr12 5180243 5180283 -138606172 - L2 LINE L2 -10 3262 3221 537 233 54 4 chr12 5180888 5181055 -138605400 + MER104 DNA Tc2 1 177 -3 192 97 0 0 chr12 5181994 5182025 -138604430 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 251 53 0 26 chr12 5186364 5186402 -138600053 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 23 33 0 0 chr12 5186633 5186663 -138599792 + AT_rich Low_complexity Low_complexity 1 30 0 39 38 0 0 chr12 5192219 5192272 -138594183 + AT_rich Low_complexity Low_complexity 1 53 0 276 170 0 0 chr12 5192699 5192752 -138593703 + CT-rich Low_complexity Low_complexity 2 54 0 621 219 0 24 chr12 5192759 5192882 -138593573 - FRAM SINE Alu -61 115 1 766 322 173 8 chr12 5192932 5193697 -138592758 - L2 LINE L2 0 3313 2407 267 287 30 48 chr12 5194200 5194367 -138592088 + LTR16C LTR ERVL 328 491 0 2136 279 128 26 chr12 5194368 5194491 -138591964 - L2 LINE L2 -942 2372 2263 889 173 152 11 chr12 5194491 5194682 -138591773 - MER20 DNA MER1_type 0 219 2 2136 279 128 26 chr12 5194682 5195482 -138590973 - L2 LINE L2 -1051 2263 1327 2166 138 3 0 chr12 5195482 5195793 -138590662 + AluSx SINE Alu 1 312 0 2136 279 128 26 chr12 5195793 5195918 -138590537 - L2 LINE L2 -1987 1327 1216 2292 90 0 7 chr12 5196388 5196727 -138589728 - AluY SINE Alu 0 311 1 810 301 52 19 chr12 5197148 5197457 -138588998 + L1ME1 LINE L1 139 457 -5939 4282 222 107 28 chr12 5197479 5197657 -138588798 + L1ME1 LINE L1 3893 4055 -2160 243 0 0 0 chr12 5197657 5197684 -138588771 + (CA)n Simple_repeat Simple_repeat 2 28 0 4282 222 107 28 chr12 5197684 5198934 -138587521 + L1ME1 LINE L1 4055 5434 -781 993 193 140 8 chr12 5198915 5199158 -138587297 + L1ME1 LINE L1 5955 6229 -6 * 375 342 59 78 chr12 5199386 5199860 -138586595 - L2 LINE L2 -4 3268 2804 310 325 68 12 chr12 5200179 5200342 -138586113 + MLT1L LTR MaLR 410 581 -34 585 310 54 71 chr12 5200431 5200912 -138585543 - MLT1K LTR MaLR -7 581 109 186 231 0 0 chr12 5201010 5201049 -138585406 - L2 LINE L2 -844 2470 2432 360 311 97 48 chr12 5201131 5201677 -138584778 - L2 LINE L2 -1409 1905 1333 7300 124 48 10 chr12 5201824 5202740 -138583715 + Tigger3b DNA MER2_type 3 974 -2054 1936 148 3 13 chr12 5202740 5203043 -138583412 - AluJb SINE Alu -7 305 6 7300 124 48 10 chr12 5203043 5203292 -138583163 + Tigger3b DNA MER2_type 974 1212 -19 739 229 58 39 chr12 5204244 5204421 -138582034 - MER3 DNA MER1_type 0 209 26 2472 68 0 3 chr12 5204421 5204717 -138581738 - AluY SINE Alu -16 295 1 739 229 58 39 chr12 5204717 5204744 -138581711 - MER3 DNA MER1_type -183 26 1 201 156 0 0 chr12 5205276 5205308 -138581147 + (CATA)n Simple_repeat Simple_repeat 3 34 0 2390 89 0 0 chr12 5205973 5206266 -138580189 - AluSc SINE Alu -16 293 1 26 30 0 0 chr12 5208709 5208742 -138577713 + AT_rich Low_complexity Low_complexity 1 33 0 1914 123 82 21 chr12 5208972 5209312 -138577143 + MER46B DNA MER2_type 1 236 0 802 289 76 23 chr12 5209369 5209764 -138576691 - L1ME3A LINE L1 -328 5842 5427 * 4288 204 56 38 chr12 5209756 5210659 -138575796 - L1MB3 LINE L1 0 6183 5258 512 65 0 130 chr12 5210659 5210751 -138575704 - MADE1 DNA Mariner 0 80 1 4288 204 56 38 chr12 5210751 5211288 -138575167 - L1MB3 LINE L1 -925 5258 4732 1508 269 121 37 chr12 5211423 5211992 -138574463 - L1MB3 LINE L1 -1650 4496 3977 1685 182 30 43 chr12 5211992 5212360 -138574095 - MLT1A1 LTR MaLR -2 363 1 1508 269 121 37 chr12 5212360 5213042 -138573413 - L1MB3 LINE L1 -2169 3977 3139 511 238 142 27 chr12 5213041 5213425 -138573030 - L1MEc LINE L1 -4494 1635 1242 * 687 294 107 44 chr12 5213426 5213492 -138572963 - L1MEc LINE L1 -4933 1186 1126 2636 39 7 3 chr12 5213492 5213799 -138572656 - AluY SINE Alu -3 308 1 687 294 107 44 chr12 5213799 5214351 -138572104 - L1MEc LINE L1 -4993 1126 529 255 219 0 16 chr12 5215047 5215111 -138571344 + GA-rich Low_complexity Low_complexity 2 64 0 218 286 14 0 chr12 5215326 5215396 -138571059 + L3b LINE CR1 1333 1403 -180 243 0 0 0 chr12 5215466 5215493 -138570962 + (TC)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr12 5215492 5215512 -138570943 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 210 71 0 0 chr12 5215531 5215559 -138570896 + (CACG)n Simple_repeat Simple_repeat 1 28 0 1649 163 3 37 chr12 5216132 5216427 -138570028 + AluJo SINE Alu 9 293 -19 925 264 35 35 chr12 5216649 5216967 -138569488 + L1MA9 LINE L1 5957 6274 -38 309 222 152 10 chr12 5217413 5217512 -138568943 - MIR SINE MIR -118 144 32 276 374 14 14 chr12 5217626 5217765 -138568690 + MIR SINE MIR 7 145 -117 194 327 0 0 chr12 5217773 5217828 -138568627 + L2 LINE L2 3247 3301 -12 453 230 57 109 chr12 5217948 5218076 -138568379 + L1MC5 LINE L1 7603 7736 -225 2563 47 0 28 chr12 5218076 5218396 -138568059 + AluY SINE Alu 1 311 0 453 230 57 109 chr12 5218396 5218598 -138567857 + L1MC5 LINE L1 7736 7916 -45 221 248 34 86 chr12 5219668 5219785 -138566670 - MIR SINE MIR -70 192 82 1016 145 14 104 chr12 5220114 5220335 -138566120 + THE1B LTR MaLR 164 364 0 12103 95 2 2 chr12 5220335 5221916 -138564539 + THE1B-int LTR MaLR 1 1580 0 2104 132 30 30 chr12 5221916 5222279 -138564176 + THE1B LTR MaLR 1 363 -1 270 255 78 35 chr12 5222285 5222426 -138564029 + MIR SINE MIR 115 261 -1 2611 206 17 11 chr12 5222902 5223441 -138563014 - MER74A LTR ERVL -16 542 1 243 261 118 59 chr12 5223718 5223837 -138562618 - L2 LINE L2 -1 3271 3146 271 330 32 37 chr12 5224546 5224734 -138561721 - L3 LINE CR1 -335 1242 1056 188 323 99 20 chr12 5224883 5225084 -138561371 + L3b LINE CR1 1342 1558 -25 1191 284 130 40 chr12 5226316 5226502 -138559953 - L1M4 LINE L1 -1783 4363 4195 829 92 8 8 chr12 5226502 5226632 -138559823 + (TTTC)n Simple_repeat Simple_repeat 2 131 0 1191 284 130 40 chr12 5226632 5226946 -138559509 - L1M4 LINE L1 -1951 4195 3911 2096 39 75 4 chr12 5226946 5227201 -138559254 + AluY SINE Alu 24 296 -15 1191 284 130 40 chr12 5227201 5227930 -138558525 - L1M4 LINE L1 -2235 3911 3022 416 304 81 14 chr12 5228302 5228647 -138557808 - L1M4 LINE L1 -3526 2620 2253 2638 174 131 13 chr12 5229859 5230400 -138556055 + MER6A DNA MER2_type 1 605 0 180 289 0 19 chr12 5230480 5230532 -138555923 + MIR3 SINE MIR 155 205 -3 23 0 0 0 chr12 5231130 5231153 -138555302 + AT_rich Low_complexity Low_complexity 1 23 0 577 259 15 0 chr12 5231682 5231813 -138554642 + MER94 DNA DNA 2 134 0 964 249 128 41 chr12 5232387 5232801 -138553654 + MLT1J2 LTR MaLR 1 450 0 3341 157 40 27 chr12 5233165 5233790 -138552665 + L1PA16 LINE L1 5521 6153 -13 479 153 92 0 chr12 5234526 5234624 -138551831 + MIR SINE MIR 60 166 -96 1530 138 0 127 chr12 5234786 5235126 -138551329 + AluJb SINE Alu 1 297 -15 200 219 0 0 chr12 5235459 5235500 -138550955 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 765 213 66 35 chr12 5235933 5236130 -138550325 - MER63A DNA MER1_type -7 203 1 882 284 0 0 chr12 5236713 5236938 -138549517 + MIR SINE MIR 28 252 -10 223 189 38 0 chr12 5236952 5237005 -138549450 + (CAT)n Simple_repeat Simple_repeat 3 57 0 1273 130 0 0 chr12 5238368 5238545 -138547910 - FRAM SINE Alu -4 172 1 529 268 37 6 chr12 5238602 5238766 -138547689 + MIR3 SINE MIR 33 201 -7 334 271 120 47 chr12 5238921 5239179 -138547276 - L2 LINE L2 -1 3312 3036 183 286 45 23 chr12 5239202 5239335 -138547120 - L2 LINE L2 -3120 194 59 435 38 0 0 chr12 5241425 5241478 -138544977 + (CA)n Simple_repeat Simple_repeat 1 53 0 788 211 33 11 chr12 5243052 5243232 -138543223 + MER5A DNA MER1_type 1 184 -5 2197 80 49 0 chr12 5243284 5243570 -138542885 + AluSp SINE Alu 1 300 -13 223 309 25 0 chr12 5244242 5244323 -138542132 - MIR3 SINE MIR -26 182 100 227 333 43 0 chr12 5245943 5246036 -138540419 - MIR SINE MIR -1 261 165 432 361 21 0 chr12 5246254 5246445 -138540010 - MIR3 SINE MIR -9 199 5 1020 219 113 124 chr12 5247557 5248502 -138537953 + L2 LINE L2 2405 3312 -1 247 246 14 29 chr12 5248793 5248862 -138537593 - L2 LINE L2 0 3272 3205 249 83 0 0 chr12 5251177 5251213 -138535242 + (A)n Simple_repeat Simple_repeat 1 36 0 1950 69 11 25 chr12 5251535 5251851 -138534604 - AluSc SINE Alu 0 321 10 1575 91 5 0 chr12 5251938 5252148 -138534307 + AluSp SINE Alu 79 289 -24 2720 258 109 40 chr12 5252175 5253462 -138532993 + HAL1 LINE L1 42 1416 -1091 1235 238 68 86 chr12 5253561 5253610 -138532845 + HAL1 LINE L1 1778 1826 -681 2305 75 0 25 chr12 5253610 5253928 -138532527 + AluY SINE Alu 1 310 -1 1235 238 68 86 chr12 5253928 5254438 -138532017 + HAL1 LINE L1 1826 2324 -183 1587 134 116 15 chr12 5254438 5254766 -138531689 + MER46B DNA MER2_type 1 236 0 1235 238 68 86 chr12 5254766 5254912 -138531543 + HAL1 LINE L1 2324 2471 -36 503 193 180 19 chr12 5255006 5255167 -138531288 + MER53 DNA DNA 2 188 -1 1449 258 110 43 chr12 5255189 5255934 -138530521 + HAL1 LINE L1 1383 2177 -330 978 250 41 116 chr12 5255988 5256566 -138529889 + L2 LINE L2 2754 3293 -20 561 196 23 86 chr12 5256576 5256737 -138529718 + HAL1 LINE L1 2301 2446 -61 2497 144 34 2 chr12 5256737 5257148 -138529307 + MSTA LTR MaLR 1 424 -4 561 196 23 86 chr12 5257148 5257206 -138529249 + HAL1 LINE L1 2446 2506 -1 2499 50 0 0 chr12 5257214 5257516 -138528939 + AluY SINE Alu 1 302 -9 376 323 85 11 chr12 5257621 5257881 -138528574 + L2 LINE L2 2450 2728 -586 2104 139 144 11 chr12 5257884 5258258 -138528197 + MSTA LTR MaLR 1 424 -4 340 353 101 58 chr12 5258329 5258631 -138527824 + L2 LINE L2 2850 3174 -98 450 0 0 0 chr12 5258631 5258681 -138527774 + (CA)n Simple_repeat Simple_repeat 2 51 0 340 353 101 58 chr12 5258681 5258775 -138527680 + L2 LINE L2 3174 3263 -9 966 225 136 121 chr12 5258942 5259529 -138526926 - Tigger8 DNA MER2_type -1 665 70 1215 91 6 0 chr12 5260220 5260396 -138526059 - L1P4 LINE L1 -684 5481 5305 441 0 0 0 chr12 5260449 5260498 -138525957 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 206 253 76 38 chr12 5260831 5260910 -138525545 + MIR SINE MIR 119 200 -62 2631 141 16 21 chr12 5261082 5261515 -138524940 - Tigger2a DNA MER2_type -2 432 2 1473 203 43 48 chr12 5261697 5262071 -138524384 + MLT1B LTR MaLR 1 372 -18 581 182 41 100 chr12 5262888 5263018 -138523437 + MER97c DNA MER1_type? 19 138 -952 4230 168 102 9 chr12 5263018 5263804 -138522651 - MER21B LTR ERV1 -3 860 2 581 182 41 100 chr12 5263804 5263843 -138522612 + MER97c DNA MER1_type? 138 178 -912 222 378 108 14 chr12 5264076 5264298 -138522157 + L2 LINE L2 2824 3066 -206 3346 133 25 55 chr12 5264386 5264445 -138522010 - LTR36 LTR ERV1 -26 585 526 2113 96 10 32 chr12 5264445 5264759 -138521696 + AluSq SINE Alu 1 307 -6 3346 133 25 55 chr12 5264759 5265260 -138521195 - LTR36 LTR ERV1 -85 526 42 2465 53 0 0 chr12 5265260 5265559 -138520896 + AluY SINE Alu 1 299 -12 3346 133 25 55 chr12 5265559 5265597 -138520858 - LTR36 LTR ERV1 -569 42 4 254 270 10 40 chr12 5266358 5266458 -138519997 + MLT1L LTR MaLR 17 113 -502 1770 148 3 23 chr12 5266459 5266762 -138519693 + AluJo SINE Alu 1 297 -15 270 116 0 0 chr12 5266771 5266814 -138519641 + (GAA)n Simple_repeat Simple_repeat 2 44 0 367 215 13 13 chr12 5266969 5267048 -138519407 + MLT1L LTR MaLR 322 400 -215 997 229 238 52 chr12 5267094 5267557 -138518898 + MLT1H LTR MaLR 1 549 0 268 261 22 11 chr12 5267557 5267639 -138518816 + MLT1L LTR MaLR 487 569 -46 385 329 86 7 chr12 5268732 5268884 -138517571 - MIR SINE MIR -78 184 21 321 331 33 76 chr12 5268970 5269154 -138517301 + MIR3 SINE MIR 9 184 -24 274 306 33 87 chr12 5270940 5271123 -138515332 + MER5B DNA MER1_type 5 177 -1 331 253 58 11 chr12 5271172 5271259 -138515196 + MER5A DNA MER1_type 56 146 -43 585 200 250 17 chr12 5271892 5272072 -138514383 + MIR SINE MIR 7 228 -34 323 248 177 9 chr12 5272194 5272307 -138514148 + L1ME4a LINE L1 5635 5766 -355 429 263 39 28 chr12 5272564 5272743 -138513712 + L1ME4a LINE L1 5941 6121 0 188 256 0 0 chr12 5272752 5272791 -138513664 - MIR SINE MIR -100 108 70 1006 169 13 9 chr12 5273402 5273721 -138512734 + GA-rich Low_complexity Low_complexity 1 320 0 259 277 79 20 chr12 5274095 5274196 -138512259 - MIR SINE MIR -84 124 18 217 0 61 0 chr12 5274440 5274473 -138511982 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 487 170 28 28 chr12 5275280 5275386 -138511069 + MER103 DNA DNA 14 119 -47 451 303 56 26 chr12 5275481 5275676 -138510779 + L3b LINE CR1 1265 1465 -118 449 270 82 41 chr12 5276485 5276681 -138509774 - MIR SINE MIR 0 262 59 2016 139 0 0 chr12 5276899 5277209 -138509246 - AluSx SINE Alu -2 310 1 2089 105 10 3 chr12 5278559 5278854 -138507601 + AluSq SINE Alu 1 297 -16 412 247 111 58 chr12 5278881 5279071 -138507384 - Charlie8 DNA MER1_type -2131 286 87 387 0 0 0 chr12 5279232 5279275 -138507180 + (CA)n Simple_repeat Simple_repeat 2 44 0 414 0 0 0 chr12 5280101 5280147 -138506308 + (TG)n Simple_repeat Simple_repeat 2 47 0 494 257 35 0 chr12 5280190 5280303 -138506152 + MIR SINE MIR 30 146 -62 391 297 102 0 chr12 5280762 5280890 -138505565 - MIR SINE MIR -48 214 74 300 304 0 0 chr12 5281607 5281768 -138504687 + (TG)n Simple_repeat Simple_repeat 2 162 0 319 211 42 0 chr12 5281768 5281839 -138504616 + L1MC4 LINE L1 1995 2068 -4358 261 253 40 61 chr12 5282040 5282139 -138504316 + MIR SINE MIR 71 167 -95 878 223 52 24 chr12 5282168 5282379 -138504076 - MIR SINE MIR -39 223 7 1676 137 45 16 chr12 5285322 5285615 -138500840 + L1P LINE L1 4351 4655 -1491 1202 106 38 64 chr12 5285615 5285840 -138500615 + L1PA11 LINE L1 5946 6174 0 1676 137 45 16 chr12 5285840 5285860 -138500595 + L1P LINE L1 4655 4673 -1473 294 293 57 19 chr12 5285925 5286031 -138500424 - L2 LINE L2 -9 3304 3195 278 137 20 0 chr12 5286203 5286254 -138500201 - MER53 DNA DNA 0 189 138 2793 209 34 61 chr12 5288363 5289120 -138497335 + L1MC4 LINE L1 4997 5773 -653 2443 62 3 0 chr12 5289120 5289428 -138497027 + AluY SINE Alu 1 309 -2 2793 209 34 61 chr12 5289428 5289628 -138496827 + L1MC4 LINE L1 5773 5320 -1106 249 98 0 0 chr12 5289628 5289669 -138496786 + (TG)n Simple_repeat Simple_repeat 2 42 0 2793 209 34 61 chr12 5289669 5290025 -138496430 + L1MC4 LINE L1 5319 5683 -743 304 315 34 68 chr12 5289709 5290061 -138496394 + L1MA10 LINE L1 5942 6281 -311 * 623 119 0 0 chr12 5290088 5290172 -138496283 - AluJ/FLAM SINE Alu -227 85 2 347 285 24 0 chr12 5290175 5290298 -138496157 + L1MA10 LINE L1 6486 6611 -3 699 265 152 19 chr12 5290590 5291096 -138495359 + L1ME3 LINE L1 5300 5829 -333 208 244 0 35 chr12 5291829 5291915 -138494540 + T-rich Low_complexity Low_complexity 2 84 0 264 344 32 0 chr12 5292022 5292179 -138494276 + L1ME LINE L1 5482 5643 -478 290 329 72 0 chr12 5292195 5292362 -138494093 + L1ME LINE L1 5692 5870 -300 2225 44 0 0 chr12 5292364 5292637 -138493818 - AluY SINE Alu -4 307 35 22 0 0 0 chr12 5292644 5292666 -138493789 + AT_rich Low_complexity Low_complexity 1 22 0 582 165 0 0 chr12 5292703 5292800 -138493655 + MSTA LTR MaLR 1 97 -331 1861 141 41 63 chr12 5293113 5293245 -138493210 + MSTA LTR MaLR 74 207 -221 2310 92 0 0 chr12 5293245 5293543 -138492912 + AluSc SINE Alu 9 302 -7 1861 141 41 63 chr12 5293543 5293773 -138492682 + MSTA LTR MaLR 207 428 0 467 257 68 78 chr12 5293990 5294580 -138491875 - L1MC5 LINE L1 -199 7843 7248 227 159 68 0 chr12 5294590 5294634 -138491821 - L1MC4 LINE L1 -795 7247 7201 * 331 288 68 41 chr12 5294611 5294830 -138491625 - L1MC5 LINE L1 -737 7224 7000 593 272 44 11 chr12 5295648 5295828 -138490627 + MIR SINE MIR 7 192 -70 2025 173 56 19 chr12 5295901 5296331 -138490124 + MER61C LTR ERV1 4 433 -1 219 236 0 18 chr12 5296625 5296680 -138489775 + MIR SINE MIR 88 141 -67 956 212 0 0 chr12 5298082 5298252 -138488203 - AluJb SINE Alu -7 305 136 1810 77 0 42 chr12 5298734 5298994 -138487461 + L1PB3 LINE L1 5752 6000 -154 490 308 50 6 chr12 5299074 5299233 -138487222 + MIR SINE MIR 22 187 -75 708 262 16 11 chr12 5299249 5299432 -138487023 - MIR SINE MIR -12 250 67 399 21 0 0 chr12 5299708 5299756 -138486699 + (TG)n Simple_repeat Simple_repeat 2 49 0 233 235 0 29 chr12 5299773 5299841 -138486614 + (TCTCTG)n Simple_repeat Simple_repeat 2 67 0 197 0 71 0 chr12 5300484 5300512 -138485943 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 188 298 0 0 chr12 5301069 5301126 -138485329 - L3 LINE CR1 -1117 460 404 222 284 136 23 chr12 5302213 5302301 -138484154 + MIR SINE MIR 160 257 -5 977 206 94 26 chr12 5302926 5303276 -138483179 - LTR37A LTR ERV1 0 426 53 588 206 73 30 chr12 5305774 5305939 -138480516 - MER5B DNA MER1_type 0 178 7 314 264 46 11 chr12 5306167 5306254 -138480201 - MLT1I LTR MaLR 0 409 320 1964 151 47 114 chr12 5306355 5306844 -138479611 + MLT2C2 LTR ERVL 3 458 -6 25357 202 29 26 chr12 5306844 5307015 -138479440 + ERVL LTR ERVL 8 177 -5580 279 0 0 0 chr12 5307015 5307046 -138479409 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 25357 202 29 26 chr12 5307046 5308018 -138478437 + ERVL LTR ERVL 177 1145 -4612 2208 211 49 58 chr12 5308018 5308573 -138477882 - MLT2B3 LTR ERVL -4 550 1 25357 202 29 26 chr12 5308573 5313056 -138473399 + ERVL LTR ERVL 1145 5757 0 1787 180 30 3 chr12 5313062 5313395 -138473060 + MLT2C1 LTR ERVL 8 349 -48 227 140 70 0 chr12 5313414 5313471 -138472984 - L1MC4 LINE L1 -1341 6701 6641 557 119 144 85 chr12 5313485 5313603 -138472852 + Tigger1 DNA MER2_type 15 139 -2279 * 979 151 104 5 chr12 5313599 5313791 -138472664 + Tigger1 DNA MER2_type 2200 2410 -8 43560 32 25 1 chr12 5313792 5319794 -138466661 + L1PA2 LINE L1 4 6155 0 281 137 118 0 chr12 5319854 5319905 -138466550 + MLT2C1 LTR ERVL 464 520 0 329 295 51 26 chr12 5320235 5320391 -138466064 + MIR SINE MIR 47 206 -56 450 139 38 38 chr12 5320681 5320760 -138465695 - MER2 DNA MER2_type -266 79 1 637 300 79 45 chr12 5321555 5321958 -138464497 + MLT1K LTR MaLR 11 427 -161 390 42 0 0 chr12 5322499 5322547 -138463908 + (TG)n Simple_repeat Simple_repeat 2 49 0 205 182 0 23 chr12 5322789 5322833 -138463622 + GA-rich Low_complexity Low_complexity 1 43 0 302 314 122 0 chr12 5323037 5323209 -138463246 + MIR SINE MIR 46 238 -24 276 163 20 0 chr12 5323390 5323439 -138463016 - MER66A LTR ERV1 -402 76 27 315 317 69 7 chr12 5324718 5324863 -138461592 - MIR SINE MIR -17 245 92 3031 231 42 36 chr12 5324863 5325089 -138461366 - L1ME2 LINE L1 -3 6161 5938 2593 107 23 28 chr12 5325089 5325481 -138460974 - MLT1B LTR MaLR 0 390 1 3031 231 42 36 chr12 5325481 5326142 -138460313 - L1ME2 LINE L1 -226 5938 5282 1784 186 7 0 chr12 5326142 5326438 -138460017 + AluJb SINE Alu 1 298 -14 3031 231 42 36 chr12 5326438 5327226 -138459229 - L1ME2 LINE L1 -882 5282 4477 3231 146 23 4 chr12 5327231 5327744 -138458711 - L1PB4 LINE L1 -12 6144 5622 2221 125 46 10 chr12 5327748 5328330 -138458125 + L1PB4 LINE L1 5015 5609 -547 1805 241 77 42 chr12 5328332 5329070 -138457385 - L1ME2 LINE L1 -1655 4491 3728 209 344 0 0 chr12 5329076 5329137 -138457318 - MIR SINE MIR -153 109 49 3457 77 4 2 chr12 5329535 5329987 -138456468 - L1PA10 LINE L1 -51 6117 5665 4893 41 0 2 chr12 5330199 5330815 -138455640 + L1PA3 LINE L1 5598 6212 0 22 0 0 0 chr12 5332268 5332290 -138454165 + AT_rich Low_complexity Low_complexity 1 22 0 286 280 127 17 chr12 5332331 5332449 -138454006 + MIR3 SINE MIR 66 196 -12 271 258 86 80 chr12 5332645 5332796 -138453659 - L2 LINE L2 -4 3268 3117 487 299 58 39 chr12 5334700 5334907 -138451548 + MIR SINE MIR 40 250 -12 282 309 58 22 chr12 5335888 5336027 -138450428 - MIR3 SINE MIR -61 147 4 403 278 23 30 chr12 5337109 5337242 -138449213 - MIR SINE MIR -41 221 90 352 306 54 7 chr12 5337850 5337997 -138448458 + MIR3 SINE MIR 31 184 -24 297 283 40 10 chr12 5338595 5338694 -138447761 - MIR SINE MIR -26 236 135 195 259 161 25 chr12 5340417 5340498 -138445957 + MIR SINE MIR 44 135 -73 455 294 41 35 chr12 5340830 5341027 -138445428 - MIR SINE MIR -55 207 10 2417 235 56 14 chr12 5342518 5343160 -138443295 + L1MC4a LINE L1 7140 7808 0 1232 162 5 5 chr12 5343165 5343381 -138443074 + L1PA15 LINE L1 5938 6153 -12 274 128 0 39 chr12 5343381 5343428 -138443027 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 197 32 0 32 chr12 5343428 5343459 -138442996 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 327 188 43 0 chr12 5343757 5343826 -138442629 - L1MB1 LINE L1 -36 6153 6082 284 274 127 45 chr12 5344012 5344169 -138442286 - L3 LINE CR1 -34 1543 1374 462 296 169 21 chr12 5344361 5344604 -138441851 - L3 LINE CR1 -276 1301 1023 309 296 62 6 chr12 5344628 5344807 -138441648 + L1ME4a LINE L1 5706 5894 -227 * 1055 225 74 21 chr12 5344806 5345144 -138441311 + L1ME3A LINE L1 5812 6167 -3 2778 211 128 96 chr12 5345185 5345938 -138440517 + L1MC3 LINE L1 6384 7265 -520 342 191 29 0 chr12 5345938 5346006 -138440449 + MLT1F1 LTR MaLR 56 125 -442 2778 211 128 96 chr12 5346006 5346528 -138439927 + L1MC3 LINE L1 7265 7769 -16 240 269 0 0 chr12 5346586 5346638 -138439817 + (CA)n Simple_repeat Simple_repeat 2 53 0 578 192 0 10 chr12 5348035 5348139 -138438316 + FLAM_A SINE Alu 18 120 -22 441 0 0 0 chr12 5348824 5348873 -138437582 + (CA)n Simple_repeat Simple_repeat 1 49 0 294 303 23 61 chr12 5350093 5350225 -138436230 - L2 LINE L2 -4 3268 3142 399 244 144 37 chr12 5350308 5350579 -138435876 - LTR33 LTR ERVL 0 521 222 213 151 0 0 chr12 5351862 5351915 -138434540 + A-rich Low_complexity Low_complexity 1 53 0 355 271 241 15 chr12 5352376 5352579 -138433876 - MIR SINE MIR 0 262 14 351 60 0 0 chr12 5353680 5353730 -138432725 + (TG)n Simple_repeat Simple_repeat 2 51 0 375 276 106 76 chr12 5354087 5354362 -138432093 - HAL1 LINE L1 0 2507 2225 303 276 109 63 chr12 5354439 5354613 -138431842 - HAL1b LINE L1 -383 965 784 326 334 91 29 chr12 5355656 5356039 -138430416 + L1MEd LINE L1 347 753 -5366 192 258 81 0 chr12 5356169 5356231 -138430224 - MIR3 SINE MIR -32 176 110 793 243 21 21 chr12 5356716 5356905 -138429550 - MER5A DNA MER1_type 0 189 1 492 201 235 40 chr12 5356916 5357065 -138429390 - MER5A DNA MER1_type -3 186 9 186 246 58 72 chr12 5357766 5357835 -138428620 - L2 LINE L2 0 3272 3205 247 340 19 9 chr12 5358085 5358191 -138428264 + L3b LINE CR1 1292 1398 -185 184 346 0 0 chr12 5360792 5360844 -138425611 - MIR SINE MIR -141 67 16 181 260 52 31 chr12 5362422 5362518 -138423937 + L2 LINE L2 2925 3022 -250 215 333 151 0 chr12 5363005 5363098 -138423357 + MIR SINE MIR 47 153 -109 416 242 0 22 chr12 5363915 5364006 -138422449 + MIR3 SINE MIR 103 191 -17 237 341 53 59 chr12 5364455 5364633 -138421822 - MIR3 SINE MIR -63 199 9 366 285 132 51 chr12 5365023 5365214 -138421241 + MIR SINE MIR 5 204 -58 327 279 126 9 chr12 5365357 5365468 -138420987 + L2 LINE L2 3140 3263 -9 180 152 0 0 chr12 5365470 5365503 -138420952 + A-rich Low_complexity Low_complexity 5 37 0 215 247 206 0 chr12 5366229 5366302 -138420153 - MIR SINE MIR -129 133 46 1894 151 0 17 chr12 5366898 5367190 -138419265 + AluJb SINE Alu 5 291 -21 487 299 55 0 chr12 5367248 5367412 -138419043 - MIR SINE MIR -26 236 64 1874 189 3 0 chr12 5368422 5368718 -138417737 + AluJo SINE Alu 1 297 -15 23 78 0 0 chr12 5368743 5368794 -138417661 + AT_rich Low_complexity Low_complexity 1 51 0 2417 89 7 0 chr12 5368914 5369218 -138417237 + AluSx SINE Alu 1 306 -6 446 320 122 14 chr12 5369258 5369480 -138416975 + MIR SINE MIR 7 252 -10 366 248 219 0 chr12 5369469 5369574 -138416881 - L2 LINE L2 -2 3311 3184 * 345 302 111 48 chr12 5369943 5370132 -138416323 + MIR3 SINE MIR 3 203 -5 1037 295 43 19 chr12 5370366 5370742 -138415713 + MLT1I LTR MaLR 25 409 0 429 253 104 33 chr12 5371103 5371285 -138415170 - MIR SINE MIR -65 197 3 322 218 211 68 chr12 5372702 5372849 -138413606 + L2 LINE L2 3146 3313 0 217 313 16 0 chr12 5372851 5372915 -138413540 + L3b LINE CR1 1302 1366 -217 * 666 263 70 0 chr12 5372906 5373092 -138413363 + MIR SINE MIR 15 213 -49 789 150 18 0 chr12 5373097 5373210 -138413245 + FLAM_C SINE Alu 6 120 -23 180 0 0 0 chr12 5373210 5373230 -138413225 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 236 204 20 0 chr12 5373234 5373283 -138413172 + MIR SINE MIR 208 257 -5 640 282 31 31 chr12 5373694 5373889 -138412566 + MIR SINE MIR 8 202 -60 386 305 102 0 chr12 5374324 5374442 -138412013 + MER5A DNA MER1_type 60 189 0 234 204 0 0 chr12 5374453 5374497 -138411958 + MIR3 SINE MIR 164 207 -1 1498 217 17 0 chr12 5375368 5375663 -138410792 - AluJo SINE Alu -12 300 1 417 244 67 17 chr12 5376030 5376149 -138410306 + MIR3 SINE MIR 1 125 -83 215 289 0 0 chr12 5376199 5376244 -138410211 + L2 LINE L2 3210 3254 -18 181 318 71 48 chr12 5377090 5377216 -138409239 - L2 LINE L2 -12 3260 3132 617 239 189 25 chr12 5377264 5377507 -138408948 - L2 LINE L2 -6 3307 3025 444 285 223 0 chr12 5377735 5377928 -138408527 - MIR SINE MIR -26 236 1 1548 208 20 10 chr12 5378062 5378356 -138408099 - AluJo SINE Alu -15 297 1 302 286 82 59 chr12 5379164 5379419 -138407036 - MIR SINE MIR 0 262 2 230 193 35 0 chr12 5379789 5379846 -138406609 + MARNA DNA Mariner 394 452 -134 2333 104 0 0 chr12 5380278 5380575 -138405880 + AluSx SINE Alu 1 297 -15 333 0 0 0 chr12 5380575 5380612 -138405843 + (CA)n Simple_repeat Simple_repeat 2 38 0 190 305 68 0 chr12 5381145 5381204 -138405251 + L2 LINE L2 3186 3248 -24 2270 71 0 20 chr12 5381451 5381787 -138404668 + AluY SINE Alu 17 311 0 183 336 80 50 chr12 5382218 5382456 -138403999 - L2 LINE L2 -4 3268 3024 845 83 0 18 chr12 5382477 5382586 -138403869 + AluSq/x SINE Alu 45 151 -161 299 331 132 0 chr12 5384747 5384868 -138401587 + L2 LINE L2 3136 3272 0 519 294 72 13 chr12 5385177 5385330 -138401125 + MIR3 SINE MIR 20 181 -27 593 121 30 0 chr12 5386097 5386196 -138400259 + MER58 DNA MER1_type 2318 2419 -1 208 327 28 37 chr12 5386529 5386636 -138399819 + L2 LINE L2 3153 3258 -14 2869 19 0 0 chr12 5386909 5387222 -138399233 - AluYb8 SINE Alu -5 313 1 182 170 0 21 chr12 5392374 5392421 -138394034 + C-rich Low_complexity Low_complexity 2 47 0 735 281 52 8 chr12 5393207 5393456 -138392999 - MIR SINE MIR 0 262 3 741 321 58 53 chr12 5394554 5395003 -138391452 + LTR16B LTR ERVL 1 451 -13 268 222 83 14 chr12 5395120 5395192 -138391263 - MER5A DNA MER1_type -99 90 14 326 186 12 0 chr12 5395284 5395370 -138391085 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 195 42 0 0 chr12 5397025 5397049 -138389406 + (TTCCC)n Simple_repeat Simple_repeat 3 26 0 802 243 15 5 chr12 5398264 5398443 -138388012 + MER5A DNA MER1_type 4 184 -5 354 249 141 68 chr12 5398519 5398696 -138387759 + MIR SINE MIR 15 204 -58 2941 148 24 16 chr12 5398983 5399482 -138386973 - MLT1D LTR MaLR -2 503 1 256 217 12 72 chr12 5399512 5399595 -138386860 - MIR3 SINE MIR -7 201 124 297 128 0 0 chr12 5400170 5400217 -138386238 + (T)n Simple_repeat Simple_repeat 1 47 0 234 81 0 0 chr12 5400537 5400574 -138385881 + (TG)n Simple_repeat Simple_repeat 2 38 0 471 328 41 26 chr12 5400828 5401023 -138385432 - MIR SINE MIR -2 260 63 797 219 31 85 chr12 5401825 5402049 -138384406 + MIR SINE MIR 49 260 -2 408 327 44 23 chr12 5402180 5402384 -138384071 + MIR SINE MIR 4 217 -45 1937 118 27 0 chr12 5402536 5402832 -138383623 - AluY SINE Alu -5 306 3 328 167 0 17 chr12 5402836 5402896 -138383559 - FAM SINE Alu -2 173 115 854 238 11 0 chr12 5402962 5403147 -138383308 - MLT2F LTR ERVL 0 663 477 180 200 0 0 chr12 5403175 5403220 -138383235 + (CTGGGG)n Simple_repeat Simple_repeat 3 47 0 2241 202 78 11 chr12 5403828 5404288 -138382167 - MLT2F LTR ERVL -172 491 1 409 240 31 31 chr12 5404676 5404805 -138381650 - MLT2F LTR ERVL -24 639 511 265 324 88 10 chr12 5405191 5405293 -138381162 + MIR SINE MIR 23 132 -76 2411 140 73 26 chr12 5405422 5405579 -138380876 + MER31A LTR ERV1 1 149 -336 1121 206 93 101 chr12 5405579 5406192 -138380263 - LTR36 LTR ERV1 0 611 4 2411 140 73 26 chr12 5406192 5406497 -138379958 + MER31A LTR ERV1 149 485 0 7497 37 5 0 chr12 5406593 5407536 -138378919 - L1PA5 LINE L1 0 6154 5210 261 57 0 0 chr12 5407603 5407638 -138378817 + (T)n Simple_repeat Simple_repeat 1 35 0 262 296 0 0 chr12 5407776 5407847 -138378608 + L2 LINE L2 3200 3270 -2 315 301 53 30 chr12 5407960 5408093 -138378362 - L1ME4a LINE L1 -11 6110 5975 406 313 113 0 chr12 5411388 5411538 -138374917 - MIR3 SINE MIR -2 206 40 671 228 58 78 chr12 5412726 5412932 -138373523 - MIR SINE MIR -41 221 20 476 191 75 0 chr12 5413852 5413946 -138372509 - MER5A DNA MER1_type -80 109 9 200 250 0 0 chr12 5414043 5414079 -138372376 - L3b LINE CR1 -257 1326 1291 679 282 12 82 chr12 5414090 5414335 -138372120 - MIR SINE MIR -3 259 32 195 383 47 0 chr12 5414768 5414875 -138371580 - L2 LINE L2 -24 3248 3137 257 308 15 90 chr12 5415164 5415297 -138371158 - L2 LINE L2 0 3313 3191 207 356 67 22 chr12 5415446 5415581 -138370874 - L2 LINE L2 -21 3251 3111 403 273 29 36 chr12 5415655 5415794 -138370661 + MER63A DNA MER1_type 69 206 -4 308 259 69 73 chr12 5415817 5416106 -138370349 - L2 LINE L2 -173 3099 2812 237 299 82 3 chr12 5416388 5416536 -138369919 + MIR SINE MIR 37 238 -24 380 343 70 6 chr12 5416654 5416826 -138369629 + L2 LINE L2 3087 3269 -3 245 183 17 0 chr12 5418276 5418336 -138368119 + (CA)n Simple_repeat Simple_repeat 2 62 0 1064 241 38 4 chr12 5420421 5420658 -138365797 - MIR SINE MIR 0 262 18 277 232 0 0 chr12 5420839 5420895 -138365560 + CT-rich Low_complexity Low_complexity 117 172 0 22 0 0 0 chr12 5421417 5421439 -138365016 + AT_rich Low_complexity Low_complexity 1 22 0 237 108 0 0 chr12 5421864 5421901 -138364554 + (TG)n Simple_repeat Simple_repeat 2 38 0 452 18 18 0 chr12 5422887 5422944 -138363511 + (GA)n Simple_repeat Simple_repeat 1 58 0 1917 188 30 10 chr12 5423193 5423592 -138362863 + L1MB7 LINE L1 5750 6156 -28 1247 203 109 14 chr12 5424429 5424705 -138361750 - AluJb SINE Alu 0 302 1 243 281 22 45 chr12 5425046 5425135 -138361320 + MIR SINE MIR 60 146 -62 324 120 0 0 chr12 5426628 5426678 -138359777 + (CATA)n Simple_repeat Simple_repeat 2 51 0 430 256 216 16 chr12 5427444 5427749 -138358706 + MLT1G1 LTR MaLR 230 595 0 269 277 23 35 chr12 5427980 5428097 -138358358 - MIR SINE MIR -103 105 16 5171 149 26 92 chr12 5428285 5429133 -138357322 - L1MA9 LINE L1 0 7272 6370 1664 88 0 0 chr12 5429133 5429349 -138357106 - AluSg/x SINE Alu -8 302 87 5171 149 26 92 chr12 5429349 5429648 -138356807 - L1MA9 LINE L1 -902 6370 6053 1735 172 13 0 chr12 5429648 5429956 -138356499 - AluJb SINE Alu 0 312 1 5171 149 26 92 chr12 5429956 5430081 -138356374 - L1MA9 LINE L1 -1219 6053 5921 2066 117 7 0 chr12 5430081 5430381 -138356074 - AluSq SINE Alu -11 302 1 5171 149 26 92 chr12 5430381 5430835 -138355620 - L1MA9 LINE L1 -1351 5921 5660 1883 229 37 18 chr12 5430827 5431339 -138355116 - L1MA9 LINE L1 -3423 3683 3162 * 980 266 99 20 chr12 5431367 5431769 -138354686 + MER57B LTR ERV1 1 434 0 1352 223 15 29 chr12 5431778 5431982 -138354473 - L1MA9 LINE L1 -5661 1369 1164 5019 28 2 5 chr12 5431982 5432564 -138353891 - L1PA3 LINE L1 -3 6152 5573 1352 223 15 29 chr12 5432564 5432698 -138353757 - L1MA9 LINE L1 -5866 1164 3 399 211 33 11 chr12 5432712 5432802 -138353653 + L2 LINE L2 3222 3313 0 330 337 66 31 chr12 5433466 5433662 -138352793 - MIR SINE MIR -36 226 24 195 299 58 23 chr12 5433798 5433885 -138352570 - MIR SINE MIR -70 192 103 248 265 44 0 chr12 5435116 5435184 -138351271 + L2 LINE L2 3242 3312 -1 476 283 36 18 chr12 5437013 5437179 -138349276 - MIR3 SINE MIR -10 198 30 1751 105 44 24 chr12 5437183 5437478 -138348977 + L1MA3 LINE L1 6005 6305 0 264 331 75 6 chr12 5438659 5438819 -138347636 + MER5A DNA MER1_type 1 171 -18 215 31 31 0 chr12 5438972 5439004 -138347451 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 260 334 138 2 chr12 5439136 5439308 -138347147 - MIR SINE MIR -68 194 15 197 303 66 0 chr12 5439664 5439740 -138346715 + L2 LINE L2 3114 3194 -78 221 0 35 0 chr12 5440063 5440092 -138346363 + (TC)n Simple_repeat Simple_repeat 1 30 0 187 329 63 0 chr12 5440481 5440560 -138345895 + L2 LINE L2 3111 3194 -78 307 272 52 29 chr12 5440663 5440799 -138345656 + MIR SINE MIR 110 248 -14 448 280 161 16 chr12 5440889 5441075 -138345380 - MIR SINE MIR -28 234 22 2018 119 0 10 chr12 5441652 5441964 -138344491 + AluSc SINE Alu 1 309 0 266 231 15 46 chr12 5442243 5442308 -138344147 + L2 LINE L2 3241 3303 -10 1368 153 0 5 chr12 5442871 5443093 -138343362 - AluSg/x SINE Alu -8 304 84 340 333 19 62 chr12 5443799 5443961 -138342494 - MIR SINE MIR -83 179 25 264 294 0 0 chr12 5444398 5444568 -138341887 + (TG)n Simple_repeat Simple_repeat 1 170 0 260 241 224 35 chr12 5446500 5446616 -138339839 - MIR3 SINE MIR -65 143 6 1234 131 60 0 chr12 5446945 5447144 -138339311 - MER20 DNA MER1_type -5 214 4 349 233 233 7 chr12 5448168 5448318 -138338137 + MER5A DNA MER1_type 6 189 0 181 333 0 71 chr12 5449357 5449456 -138336999 + L2 LINE L2 2996 3087 -185 1870 141 7 3 chr12 5449579 5449877 -138336578 + AluSg SINE Alu 1 299 -11 520 272 10 57 chr12 5449877 5450080 -138336375 + MIR SINE MIR 62 254 -8 221 269 71 14 chr12 5451321 5451427 -138335028 + MIR SINE MIR 32 142 -66 509 253 91 19 chr12 5451567 5451904 -138334551 + MLT1J2 LTR MaLR 13 442 -8 332 341 24 8 chr12 5451986 5452112 -138334343 + MIR3 SINE MIR 30 157 -51 261 333 53 26 chr12 5452473 5452587 -138333868 + MER91C DNA MER1_type 24 140 0 * 506 336 68 65 chr12 5452587 5452963 -138333492 + L2 LINE L2 2891 3267 -5 226 296 45 11 chr12 5454214 5454302 -138332153 + L2 LINE L2 3139 3229 -43 1373 248 47 77 chr12 5454364 5454695 -138331760 + MER77 LTR ERV1 121 477 -200 1798 153 0 7 chr12 5454695 5454989 -138331466 - AluSx SINE Alu -20 292 1 1373 248 47 77 chr12 5454989 5455181 -138331274 + MER77 LTR ERV1 477 673 -4 866 289 29 8 chr12 5455648 5455894 -138330561 - MIR SINE MIR 0 262 12 356 250 0 0 chr12 5456247 5456327 -138330128 + MER116 DNA Mariner 1 80 0 327 304 99 44 chr12 5456560 5456741 -138329714 + MIR SINE MIR 1 191 -71 254 209 105 35 chr12 5457735 5457821 -138328634 + L2 LINE L2 2969 3060 -212 * 484 355 69 43 chr12 5457816 5457909 -138328546 - L2 LINE L2 0 3313 3224 2463 56 0 0 chr12 5457909 5458215 -138328240 + AluY SINE Alu 1 306 -5 484 355 69 43 chr12 5458215 5458467 -138327988 - L2 LINE L2 -89 3224 2959 250 289 22 11 chr12 5459293 5459383 -138327072 + MIR SINE MIR 65 155 -107 1239 197 16 100 chr12 5459873 5460193 -138326262 + AluJb SINE Alu 2 294 -8 1380 196 36 0 chr12 5461192 5461493 -138324962 - MER33 DNA MER1_type -8 316 5 301 274 32 73 chr12 5463736 5463860 -138322595 + L2 LINE L2 3195 3313 0 252 149 0 0 chr12 5463860 5463907 -138322548 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 2480 160 24 12 chr12 5464003 5464427 -138322028 + MSTB1 LTR MaLR 4 432 0 565 101 13 0 chr12 5464694 5464773 -138321682 - MADE1 DNA Mariner 0 80 1 240 304 13 38 chr12 5465823 5465902 -138320553 - L2 LINE L2 -5 3267 3191 369 75 0 0 chr12 5466560 5466613 -138319842 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 348 331 21 35 chr12 5466648 5466793 -138319662 + MIR SINE MIR 49 191 -71 399 253 131 19 chr12 5467614 5467774 -138318681 + MIR SINE MIR 30 204 -58 265 313 45 37 chr12 5468425 5468559 -138317896 - MER5A DNA MER1_type -5 184 50 * 419 335 13 13 chr12 5468443 5468595 -138317860 + MER5A DNA MER1_type 35 186 -3 213 275 14 14 chr12 5468975 5469044 -138317411 + GA-rich Low_complexity Low_complexity 4 72 0 888 212 4 11 chr12 5469208 5469477 -138316978 + AluY SINE Alu 44 310 -1 290 329 72 0 chr12 5469478 5469645 -138316810 - L1ME LINE L1 -300 5870 5692 264 344 32 0 chr12 5469661 5469818 -138316637 - L1ME LINE L1 -478 5643 5482 208 244 0 35 chr12 5469925 5470011 -138316444 + A-rich Low_complexity Low_complexity 2 84 0 699 264 148 15 chr12 5470744 5471250 -138315205 - L1ME3 LINE L1 -287 5883 5300 376 276 24 0 chr12 5471542 5471665 -138314790 - L1MA10 LINE L1 -3 6331 6206 623 119 0 0 chr12 5471668 5471752 -138314703 + AluJ/FLAM SINE Alu 2 85 -227 304 315 34 68 chr12 5471779 5471815 -138314640 - L1MA10 LINE L1 -311 6001 5966 2799 210 34 61 chr12 5471815 5472171 -138314284 - L1MD3 LINE L1 -743 5403 5039 249 98 0 0 chr12 5472171 5472212 -138314243 + (CA)n Simple_repeat Simple_repeat 2 42 0 2799 210 34 61 chr12 5472212 5472412 -138314043 - L1MD3 LINE L1 -1107 5039 5492 2439 62 3 0 chr12 5472412 5472720 -138313735 - AluY SINE Alu -2 309 1 2799 210 34 61 chr12 5472720 5473477 -138312978 - L1MD3 LINE L1 -653 5493 4717 278 137 20 0 chr12 5475586 5475637 -138310818 + MER53 DNA DNA 138 189 0 294 293 57 19 chr12 5475809 5475915 -138310540 + L2 LINE L2 3195 3304 -9 1187 111 38 64 chr12 5475999 5476234 -138310221 - L1PA11 LINE L1 0 6174 5946 1659 141 39 0 chr12 5476234 5476517 -138309938 - L1P LINE L1 -1502 4644 4351 306 345 42 18 chr12 5480188 5480356 -138306099 - MIR3 SINE MIR -1 207 36 971 264 115 21 chr12 5480375 5480844 -138305611 + MER113 DNA MER1_type? 1 513 -8 193 343 29 20 chr12 5482357 5482459 -138303996 - MIR SINE MIR -63 145 43 565 253 28 50 chr12 5483066 5483248 -138303207 + MIR3 SINE MIR 9 186 -22 2609 234 82 17 chr12 5483733 5484842 -138301613 - MER69B DNA AcHobo 0 1226 1 358 294 123 28 chr12 5485154 5485365 -138301090 + L1ME4a LINE L1 5730 5960 -161 1325 223 38 11 chr12 5485531 5485818 -138300637 - AluJb SINE Alu -7 295 1 203 176 0 0 chr12 5486017 5486051 -138300404 + GA-rich Low_complexity Low_complexity 1 34 0 346 282 0 0 chr12 5487105 5487190 -138299265 - L2 LINE L2 -3 3310 3226 579 288 21 46 chr12 5488446 5488686 -138297769 - L1ME LINE L1 -314 5807 5574 266 299 11 35 chr12 5489251 5489338 -138297117 - L2 LINE L2 0 3272 3188 2473 197 85 4 chr12 5489538 5490080 -138296375 - L1MB7 LINE L1 -8 6176 5591 674 303 118 36 chr12 5490203 5490794 -138295661 - L1ME4a LINE L1 -209 5912 5348 352 374 14 0 chr12 5491148 5491287 -138295168 + L3b LINE CR1 1257 1397 -186 385 243 84 24 chr12 5491608 5491771 -138294684 - MIR SINE MIR -19 189 17 574 270 44 22 chr12 5491979 5492180 -138294275 + MIR SINE MIR 60 262 0 237 196 0 0 chr12 5492242 5492298 -138294157 + CT-rich Low_complexity Low_complexity 3 58 0 211 292 0 0 chr12 5492305 5492353 -138294102 - L2 LINE L2 -10 3262 3215 275 282 65 100 chr12 5492506 5492676 -138293779 - MIR3 SINE MIR -14 194 31 349 302 43 9 chr12 5493307 5493423 -138293032 + MIR SINE MIR 26 145 -63 189 0 0 0 chr12 5493558 5493579 -138292876 + (T)n Simple_repeat Simple_repeat 1 21 0 364 351 0 0 chr12 5494257 5494371 -138292084 + L2 LINE L2 3195 3308 -5 340 254 75 67 chr12 5495402 5495536 -138290919 - MIR SINE MIR -108 154 20 2353 35 0 3 chr12 5495813 5496131 -138290324 + AluY SINE Alu 1 317 0 234 224 20 0 chr12 5497068 5497117 -138289338 + L2 LINE L2 3137 3186 -86 195 250 133 0 chr12 5497985 5498045 -138288410 - MIR SINE MIR -95 113 46 794 218 93 5 chr12 5498108 5498301 -138288154 + MER44D DNA MER2_type 1 480 -129 233 234 0 0 chr12 5499414 5499461 -138286994 + L2 LINE L2 3225 3271 -1 1241 249 23 26 chr12 5499881 5500223 -138286232 - L1ME1 LINE L1 -18 6148 5808 3085 130 45 2 chr12 5500244 5500728 -138285727 - L1PB2 LINE L1 -1 6150 5646 1218 250 56 75 chr12 5500728 5501140 -138285315 - MLT2B3 LTR ERVL 0 554 151 2666 43 19 0 chr12 5501142 5501464 -138284991 - L1PA7 LINE L1 -246 5908 5581 531 300 37 16 chr12 5502028 5502218 -138284237 - MIR3 SINE MIR -7 201 8 952 316 8 0 chr12 5502387 5502643 -138283812 - MIR SINE MIR -4 258 1 302 267 37 82 chr12 5503683 5503818 -138282637 - L2 LINE L2 0 3313 3185 416 285 48 42 chr12 5503844 5504009 -138282446 - MIR3 SINE MIR -27 181 16 330 333 26 52 chr12 5504114 5504267 -138282188 - L3b LINE CR1 -136 1447 1299 187 316 119 18 chr12 5504623 5504791 -138281664 + MIR SINE MIR 7 191 -71 1759 152 19 13 chr12 5504913 5505223 -138281232 - AluSx SINE Alu 0 312 1 357 301 78 0 chr12 5505399 5505502 -138280953 + L2 LINE L2 3203 3313 0 243 299 31 21 chr12 5505758 5505855 -138280600 - MIR3 SINE MIR -2 206 109 1919 119 0 33 chr12 5506668 5506971 -138279484 + AluSg SINE Alu 1 293 -17 2018 129 3 0 chr12 5507514 5507825 -138278630 - AluSx SINE Alu 0 312 1 599 289 34 5 chr12 5508472 5508676 -138277779 - ERVL LTR ERVL -3793 1971 1762 2317 81 0 0 chr12 5508820 5509148 -138277307 + AluY SINE Alu 1 311 0 334 289 82 59 chr12 5510035 5510305 -138276150 - ERVL LTR ERVL -5142 622 347 696 198 96 0 chr12 5510661 5510818 -138275637 + MER45C DNA AcHobo 25 196 -757 212 86 29 0 chr12 5511332 5511367 -138275088 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 267 318 12 0 chr12 5512266 5512351 -138274104 + GA-rich Low_complexity Low_complexity 3 88 0 25 65 0 0 chr12 5512583 5512629 -138273826 + AT_rich Low_complexity Low_complexity 1 46 0 1151 244 70 45 chr12 5513139 5513495 -138272960 - MLT1A2 LTR MaLR -4 370 6 1182 291 154 28 chr12 5514526 5515582 -138270873 - L2 LINE L2 0 3313 2111 566 275 16 11 chr12 5515587 5515769 -138270686 - MER117 DNA MER1_type -5 192 10 779 156 133 64 chr12 5515967 5516098 -138270357 + MER5A DNA MER1_type 3 150 -39 1449 156 122 0 chr12 5516098 5516368 -138270087 - AluSx SINE Alu -9 303 1 779 156 133 64 chr12 5516368 5516409 -138270046 + MER5A DNA MER1_type 150 187 -2 316 311 149 19 chr12 5516935 5517096 -138269359 + MIR SINE MIR 21 202 -60 1030 202 160 93 chr12 5517161 5517612 -138268843 + MLT1D LTR MaLR 21 501 -4 180 210 99 62 chr12 5518465 5518546 -138267909 + L2 LINE L2 476 559 -2755 401 331 86 43 chr12 5519452 5519650 -138266805 - L3b LINE CR1 0 1583 1368 937 167 6 13 chr12 5519650 5519806 -138266649 + FRAM SINE Alu 1 155 -11 401 331 86 43 chr12 5519806 5519885 -138266570 - L3b LINE CR1 -215 1368 1294 180 250 25 75 chr12 5520219 5520299 -138266156 - L3 LINE CR1 -143 1434 1359 590 276 20 15 chr12 5520538 5520734 -138265721 + MER117 DNA MER1_type 1 197 0 184 200 29 0 chr12 5520804 5520839 -138265616 + L2 LINE L2 3230 3265 -7 2335 75 0 3 chr12 5521704 5522010 -138264445 + AluY SINE Alu 1 305 -6 591 232 187 25 chr12 5522072 5522270 -138264185 + MIR SINE MIR 31 260 -2 430 99 127 0 chr12 5522337 5522408 -138264047 + MADE1 DNA Mariner 1 80 0 402 39 0 0 chr12 5523107 5523159 -138263296 + (TG)n Simple_repeat Simple_repeat 1 52 0 273 57 0 0 chr12 5523159 5523194 -138263261 + (GA)n Simple_repeat Simple_repeat 2 36 0 213 260 0 115 chr12 5524888 5524984 -138261471 + L3b LINE CR1 1180 1264 -319 1679 232 127 12 chr12 5528055 5528550 -138257905 - MLT1H1 LTR MaLR -2 553 2 236 259 23 76 chr12 5530239 5530265 -138256190 - L1MC4 LINE L1 -1304 6738 6712 321 26 0 0 chr12 5530265 5530303 -138256152 + (TG)n Simple_repeat Simple_repeat 2 39 0 236 259 23 76 chr12 5530303 5530407 -138256048 - L1MC4 LINE L1 -1330 6712 6615 260 246 29 0 chr12 5530441 5530510 -138255945 + GA-rich Low_complexity Low_complexity 4 74 0 461 239 101 112 chr12 5530527 5530954 -138255501 + MLT1J1 LTR MaLR 1 422 -24 242 325 36 0 chr12 5531329 5531412 -138255043 + L3 LINE CR1 1405 1490 -87 641 104 21 10 chr12 5531421 5531517 -138254938 + AluSc SINE Alu 198 294 -15 2376 41 24 0 chr12 5531586 5531876 -138254579 - AluY SINE Alu -2 309 13 214 200 0 0 chr12 5533287 5533327 -138253128 + A-rich Low_complexity Low_complexity 1 40 0 259 282 87 68 chr12 5533556 5533659 -138252796 + L2 LINE L2 3143 3247 -25 650 289 122 28 chr12 5533669 5534029 -138252426 + MLT1I LTR MaLR 14 407 -2 483 18 0 0 chr12 5534054 5534110 -138252345 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 266 319 106 28 chr12 5534299 5534440 -138252015 - L2 LINE L2 -22 3291 3140 1496 179 0 14 chr12 5534755 5535034 -138251421 + AluJb SINE Alu 1 275 -37 221 352 51 40 chr12 5535085 5535261 -138251194 - L2 LINE L2 -555 2759 2582 335 250 202 58 chr12 5536777 5536965 -138249490 - MIR SINE MIR -41 221 7 1525 194 19 10 chr12 5537253 5537538 -138248917 + AluJb SINE Alu 1 292 -128 294 29 0 0 chr12 5537538 5537573 -138248882 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 1525 194 19 10 chr12 5537573 5537704 -138248751 + AluJb SINE Alu 292 420 0 498 185 19 0 chr12 5537596 5537887 -138248568 + GA-rich Low_complexity Low_complexity 4 296 0 270 152 103 52 chr12 5539342 5539460 -138246995 - MIR SINE MIR -64 144 30 286 277 12 24 chr12 5539791 5539874 -138246581 + MIR SINE MIR 22 103 -105 1348 208 75 13 chr12 5544546 5544854 -138241601 + L1ME3 LINE L1 5825 6151 -11 22 0 0 0 chr12 5545121 5545143 -138241312 + AT_rich Low_complexity Low_complexity 1 22 0 2324 160 149 9 chr12 5546427 5546890 -138239565 + MER74A LTR ERVL 1 528 -30 363 23 0 0 chr12 5547455 5547499 -138238956 + (CA)n Simple_repeat Simple_repeat 2 45 0 393 292 32 50 chr12 5548826 5549045 -138237410 + LTR16C LTR ERVL 253 467 -24 754 284 34 13 chr12 5549650 5549886 -138236569 + LTR16A1 LTR ERVL 217 457 0 519 274 57 6 chr12 5550077 5550234 -138236221 + MIR SINE MIR 20 184 -78 243 206 89 123 chr12 5553387 5553533 -138232922 - MIR SINE MIR -66 142 2 1672 159 18 4 chr12 5554020 5554296 -138232159 - MLT1A1 LTR MaLR 0 365 86 2765 148 31 67 chr12 5554296 5554493 -138231962 - LTR26B LTR ERV1 0 531 328 2168 110 62 39 chr12 5554493 5554849 -138231606 - THE1B LTR MaLR 0 364 1 2765 148 31 67 chr12 5554849 5555173 -138231282 - LTR26B LTR ERV1 -203 328 29 1327 155 155 8 chr12 5555174 5555337 -138231118 - AluSx SINE Alu -16 296 158 510 62 0 104 chr12 5555337 5555433 -138231022 - L1PA5 LINE L1 0 6154 6069 1327 155 155 8 chr12 5555433 5555527 -138230928 - AluSx SINE Alu -154 158 1 321 51 0 0 chr12 5555527 5555566 -138230889 - LTR26B LTR ERV1 -492 39 1 409 176 47 24 chr12 5555569 5555654 -138230801 - MLT1A1 LTR MaLR -287 87 1 292 310 47 21 chr12 5555697 5555851 -138230604 - MIR3 SINE MIR -64 144 3 211 284 15 0 chr12 5557979 5558046 -138228409 + L2 LINE L2 3246 3313 0 305 302 9 9 chr12 5558059 5558165 -138228290 - MER69 DNA AcHobo 0 2526 2421 228 281 105 26 chr12 5559713 5559827 -138226628 + MIR SINE MIR 24 146 -62 183 231 0 0 chr12 5559941 5559980 -138226475 + L2 LINE L2 3255 3293 -20 258 32 0 0 chr12 5560773 5560804 -138225651 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1982 126 7 3 chr12 5560813 5561098 -138225357 - AluSg SINE Alu -24 286 1 1133 81 0 0 chr12 5561098 5561234 -138225221 - AluSq/x SINE Alu -177 136 1 208 268 30 105 chr12 5561559 5561703 -138224752 - MIR SINE MIR -63 145 21 319 222 41 12 chr12 5561737 5561908 -138224547 + (TA)n Simple_repeat Simple_repeat 1 176 0 283 200 12 71 chr12 5563488 5563573 -138222882 + MIR SINE MIR 101 180 -82 436 267 96 37 chr12 5563983 5564170 -138222285 - MIR SINE MIR -42 220 23 234 279 15 0 chr12 5565488 5565556 -138220899 - MARNA DNA Mariner -106 480 412 2027 101 62 7 chr12 5567334 5567622 -138218833 + AluSx SINE Alu 1 304 -8 270 0 0 0 chr12 5567757 5567787 -138218668 + (TG)n Simple_repeat Simple_repeat 2 31 0 247 291 45 22 chr12 5568297 5568431 -138218024 - MLT1J2 LTR MaLR -239 211 75 251 281 94 31 chr12 5569914 5570042 -138216413 + L2 LINE L2 3178 3313 0 1681 151 7 53 chr12 5571140 5571444 -138215011 - AluJo SINE Alu -22 290 1 396 147 11 53 chr12 5571579 5571674 -138214781 + MIR SINE MIR 61 151 -111 1735 205 108 24 chr12 5572036 5572461 -138213994 - MLT1C LTR MaLR -6 461 1 326 284 57 28 chr12 5572645 5572821 -138213634 + MER5A DNA MER1_type 3 183 -6 268 258 76 61 chr12 5575793 5575925 -138210530 - L2 LINE L2 0 3313 3180 2183 101 7 16 chr12 5576158 5576465 -138209990 - AluY SINE Alu -7 304 1 697 269 111 1 chr12 5576707 5576918 -138209537 + MIR SINE MIR 5 237 -25 724 213 8 130 chr12 5577031 5577270 -138209185 - MER63A DNA MER1_type 0 210 1 28 79 0 0 chr12 5577747 5577810 -138208645 + AT_rich Low_complexity Low_complexity 1 63 0 687 281 31 13 chr12 5577881 5578109 -138208346 - MIR SINE MIR -10 252 21 662 141 67 15 chr12 5578124 5578259 -138208196 + Ricksha_a DNA DNA 12 153 -1028 * 5639 190 49 51 chr12 5578227 5578995 -138207460 + Ricksha DNA DNA 1712 2481 -765 2453 68 0 0 chr12 5578995 5579312 -138207143 - AluY SINE Alu 0 317 1 5639 190 49 51 chr12 5579312 5580078 -138206377 + Ricksha DNA DNA 2481 3246 0 397 232 176 0 chr12 5580260 5580385 -138206070 + MER96 DNA MER1_type? 27 173 -2 5541 150 27 9 chr12 5580618 5581547 -138204908 - L1MA9 LINE L1 0 6312 5367 267 250 0 0 chr12 5581984 5582040 -138204415 + MIR SINE MIR 76 131 -77 182 265 0 0 chr12 5582411 5582460 -138203995 - L2 LINE L2 -1 3312 3264 315 321 0 0 chr12 5582607 5582691 -138203764 - L2 LINE L2 -2 3270 3187 2902 117 2 9 chr12 5582741 5583170 -138203285 + L1PB3 LINE L1 5726 6151 -3 1061 211 5 10 chr12 5583658 5583867 -138202588 - MLT1C LTR MaLR -3 464 257 1728 202 123 40 chr12 5583982 5584421 -138202034 + MLT2B1 LTR ERVL 1 485 -35 213 39 0 0 chr12 5584421 5584447 -138202008 + (CA)n Simple_repeat Simple_repeat 2 27 0 1728 202 123 40 chr12 5584447 5584487 -138201968 + MLT2B1 LTR ERVL 485 520 0 567 318 81 0 chr12 5585527 5585763 -138200692 + MIR SINE MIR 5 259 -3 371 246 15 52 chr12 5585875 5586009 -138200446 - MIR3 SINE MIR -4 204 76 223 354 108 49 chr12 5586020 5587024 -138199431 - L2 LINE L2 -15 3257 2099 2511 72 10 0 chr12 5587024 5587331 -138199124 + AluY SINE Alu 1 310 -1 223 354 108 49 chr12 5587331 5587914 -138198541 - L2 LINE L2 -1173 2099 1552 214 239 0 0 chr12 5588185 5588231 -138198224 - MIR SINE MIR -130 78 33 1540 174 83 0 chr12 5589268 5589533 -138196922 + AluJo SINE Alu 1 287 -25 948 271 161 21 chr12 5589611 5590046 -138196409 - MLT1H1 LTR MaLR -19 536 41 687 269 60 39 chr12 5590587 5591045 -138195410 + MLT1H LTR MaLR 22 587 -3 1045 175 18 51 chr12 5591621 5591838 -138194617 + MER20 DNA MER1_type 7 216 -3 1808 237 45 30 chr12 5591974 5592501 -138193954 + L1ME LINE L1 3449 3983 -2163 6529 79 6 12 chr12 5592520 5593397 -138193058 + L1PA10 LINE L1 5298 6168 0 326 47 0 0 chr12 5593397 5593440 -138193015 - MADE1 DNA Mariner -37 43 1 288 333 68 12 chr12 5593518 5593680 -138192775 + MIR SINE MIR 36 206 -56 1259 167 0 5 chr12 5595281 5595485 -138190970 - AluSg/x SINE Alu -14 298 96 318 303 148 12 chr12 5596449 5596611 -138189844 + MIR3 SINE MIR 12 195 -13 2233 88 0 63 chr12 5596774 5597091 -138189364 - AluY SINE Alu -14 297 1 502 270 33 20 chr12 5597347 5597499 -138188956 - MIR3 SINE MIR -9 199 46 668 282 39 0 chr12 5598942 5599148 -138187307 - MIR SINE MIR 0 262 49 259 362 65 7 chr12 5599202 5599340 -138187115 - MIR3 SINE MIR -62 146 1 287 306 9 28 chr12 5599733 5599841 -138186614 - MIR SINE MIR -78 184 79 1231 287 132 30 chr12 5599850 5600763 -138185692 + L2 LINE L2 2326 3313 0 449 273 27 21 chr12 5601750 5601899 -138184556 + MIR SINE MIR 16 163 -63 268 311 168 19 chr12 5602666 5602827 -138183628 + MIR SINE MIR 53 237 -25 189 107 0 0 chr12 5603277 5603305 -138183150 + (TG)n Simple_repeat Simple_repeat 1 28 0 6365 58 1 11 chr12 5606390 5607214 -138179241 - L1PA5 LINE L1 0 6154 5364 226 279 135 0 chr12 5607214 5607318 -138179137 - MER113 DNA MER1_type? -176 345 228 253 292 35 42 chr12 5607417 5607561 -138178894 + L1ME LINE L1 4055 4197 -1949 352 300 118 30 chr12 5607657 5608130 -138178325 + L1ME LINE L1 4330 4844 -1302 328 315 88 21 chr12 5608174 5608412 -138178043 + L1ME LINE L1 5017 5270 -876 315 319 98 43 chr12 5608497 5608845 -138177610 + L1ME LINE L1 5384 5750 -412 396 295 23 66 chr12 5608858 5609116 -138177339 + L2 LINE L2 3006 3252 -61 43603 32 24 2 chr12 5610558 5616576 -138169879 - L1PA3 LINE L1 0 6155 1 1546 196 76 25 chr12 5617144 5617511 -138168944 + MLT1B LTR MaLR 5 390 0 278 249 68 79 chr12 5618292 5618469 -138167986 - MIR3 SINE MIR 0 208 34 459 325 39 10 chr12 5619845 5620051 -138166404 - LTR16A LTR ERVL -101 349 138 225 277 15 0 chr12 5620099 5620164 -138166291 - LTR16A1 LTR ERVL -319 138 73 623 286 40 0 chr12 5620185 5620360 -138166095 + MIR3 SINE MIR 21 202 -6 1547 158 104 188 chr12 5620780 5621598 -138164857 - Zaphod DNA AcHobo -1 4030 3282 945 285 0 12 chr12 5621599 5621841 -138164614 - Zaphod DNA AcHobo -3383 648 410 546 196 0 0 chr12 5621848 5621945 -138164510 + FLAM_A SINE Alu 34 130 -12 976 303 110 16 chr12 5621945 5622328 -138164127 - Zaphod DNA AcHobo -3604 427 9 228 350 50 25 chr12 5622436 5622556 -138163899 + L2 LINE L2 2620 2742 -572 210 150 0 0 chr12 5622565 5622605 -138163850 + (A)n Simple_repeat Simple_repeat 1 40 0 302 367 33 37 chr12 5622631 5622846 -138163609 + L2 LINE L2 2764 2977 -337 246 294 89 0 chr12 5623231 5623348 -138163107 + MIR SINE MIR 45 178 -69 1970 159 0 13 chr12 5623416 5623731 -138162724 + AluSx SINE Alu 1 311 -1 180 347 13 27 chr12 5624225 5624300 -138162155 + MIR3 SINE MIR 126 199 -9 21 36 0 0 chr12 5624322 5624350 -138162105 + AT_rich Low_complexity Low_complexity 1 28 0 357 380 28 6 chr12 5624596 5624775 -138161680 + MIR SINE MIR 20 202 -60 364 302 85 32 chr12 5626460 5626649 -138159806 - MIR SINE MIR -15 247 49 338 138 0 62 chr12 5627120 5627185 -138159270 - L2 LINE L2 -1085 2229 2169 740 287 38 43 chr12 5627820 5628242 -138158213 + L1MCc LINE L1 35 454 -5969 662 319 101 18 chr12 5628696 5629239 -138157216 + HAL1b LINE L1 53 640 -708 1710 231 150 67 chr12 5629574 5630537 -138155918 + L1MC5 LINE L1 6505 7530 -431 338 296 52 35 chr12 5630620 5630792 -138155663 + L1ME3A LINE L1 5987 6161 -9 209 262 19 37 chr12 5630796 5630903 -138155552 + (TATG)n Simple_repeat Simple_repeat 4 108 0 * 222 298 12 12 chr12 5630823 5630907 -138155548 + (TCTG)n Simple_repeat Simple_repeat 4 87 0 298 341 6 17 chr12 5631449 5631622 -138154833 + GA-rich Low_complexity Low_complexity 4 174 0 511 270 0 16 chr12 5632549 5632675 -138153780 + L2 LINE L2 3190 3313 0 581 276 13 84 chr12 5633105 5633330 -138153125 - MIR SINE MIR -5 257 49 263 296 281 0 chr12 5633480 5633683 -138152772 - MIR SINE MIR -1 261 2 203 226 19 19 chr12 5634179 5634232 -138152223 - L2 LINE L2 -3 3269 3217 418 310 78 0 chr12 5634426 5634578 -138151877 + MIR3 SINE MIR 33 197 -11 214 246 31 0 chr12 5635691 5635756 -138150699 - MIR SINE MIR -48 214 148 21 0 0 0 chr12 5636582 5636603 -138149852 + AT_rich Low_complexity Low_complexity 1 21 0 206 146 36 18 chr12 5637070 5637125 -138149330 + T-rich Low_complexity Low_complexity 4 59 0 353 252 131 44 chr12 5638326 5638532 -138147923 + MER5C DNA MER1_type 86 309 -15 324 207 133 30 chr12 5638613 5638748 -138147707 + MER103 DNA DNA 8 156 -10 1093 254 87 61 chr12 5639078 5639276 -138147179 + MLT1J LTR MaLR 3 194 -317 1954 97 23 0 chr12 5639276 5639533 -138146922 + AluSc SINE Alu 44 306 -3 1093 254 87 61 chr12 5639533 5639794 -138146661 + MLT1J LTR MaLR 194 474 -37 217 159 23 0 chr12 5639794 5639838 -138146617 + T-rich Low_complexity Low_complexity 2 46 0 2493 230 63 35 chr12 5639869 5640623 -138145832 - L1M4 LINE L1 -5720 822 5 924 283 79 41 chr12 5641136 5641504 -138144951 + L2 LINE L2 2157 2538 -776 1473 300 40 30 chr12 5641819 5642581 -138143874 + L2 LINE L2 2543 3313 0 334 291 39 0 chr12 5643492 5643595 -138142860 - MER103 DNA DNA -57 109 3 440 211 112 59 chr12 5643658 5643810 -138142645 + MER20B DNA MER1_type 43 202 -17 279 348 50 14 chr12 5643856 5643997 -138142458 - MIR3 SINE MIR -58 150 5 541 302 77 32 chr12 5644166 5644407 -138142048 - MIR SINE MIR -6 256 7 1802 176 10 3 chr12 5645018 5645325 -138141130 + AluSx SINE Alu 1 309 -3 11392 152 35 18 chr12 5645329 5648301 -138138154 + L1MA5 LINE L1 3046 6065 -235 5137 75 11 11 chr12 5648312 5648964 -138137491 - L1PA11 LINE L1 0 6174 5523 241 111 67 44 chr12 5648964 5649009 -138137446 + L1MA5 LINE L1 6050 6095 -205 2309 218 55 42 chr12 5650496 5651530 -138134925 - L1MEc LINE L1 -3333 2882 1860 252 221 126 0 chr12 5651530 5651625 -138134830 - Charlie8 DNA MER1_type -2261 156 50 266 227 106 0 chr12 5651754 5651820 -138134635 - L1MC/D LINE L1 -1999 5809 5737 314 252 102 95 chr12 5652052 5652199 -138134256 - MIR3 SINE MIR -28 180 33 253 279 41 141 chr12 5652236 5652455 -138134000 - L3 LINE CR1 -9 1568 1379 2430 66 0 7 chr12 5652455 5652758 -138133697 + AluY SINE Alu 1 301 -10 253 279 41 141 chr12 5652758 5652807 -138133648 - L3 LINE CR1 -198 1379 1327 948 319 125 47 chr12 5652842 5653313 -138133142 - L3 LINE CR1 -412 1165 733 1514 192 0 17 chr12 5653313 5653610 -138132845 + AluJo SINE Alu 1 292 -20 2106 72 8 0 chr12 5653611 5653873 -138132582 + AluSc SINE Alu 44 307 -2 948 319 125 47 chr12 5653873 5654173 -138132282 - L3 LINE CR1 -843 734 331 21 0 0 0 chr12 5654274 5654295 -138132160 + AT_rich Low_complexity Low_complexity 1 21 0 207 240 60 0 chr12 5655331 5655381 -138131074 + MIR3 SINE MIR 118 170 -38 961 204 21 5 chr12 5655454 5655640 -138130815 - MER5A DNA MER1_type 0 189 1 1224 198 107 0 chr12 5655701 5655944 -138130511 + Tigger4(Zombi) DNA MER2_type 1 269 -2462 1367 127 23 18 chr12 5655945 5656166 -138130289 + Tigger4(Zombi) DNA MER2_type 2510 2731 0 348 302 112 9 chr12 5656963 5657079 -138129376 - L2 LINE L2 -6 3266 3139 396 245 54 68 chr12 5658250 5658397 -138128058 + MER63A DNA MER1_type 61 205 -5 4398 113 9 3 chr12 5659742 5660379 -138126076 - L1PA16 LINE L1 -180 5986 5346 846 175 11 51 chr12 5660379 5660550 -138125905 + L1PA16 LINE L1 5994 6163 -3 633 251 24 86 chr12 5661092 5661347 -138125108 - MIR SINE MIR -3 259 21 22 35 0 0 chr12 5662210 5662239 -138124216 + AT_rich Low_complexity Low_complexity 1 29 0 206 240 0 20 chr12 5662506 5662556 -138123899 + CT-rich Low_complexity Low_complexity 3 51 0 233 345 112 0 chr12 5662745 5662861 -138123594 + L2 LINE L2 3137 3265 -7 2113 132 0 19 chr12 5663123 5663441 -138123014 + AluSx SINE Alu 1 312 0 1350 201 27 20 chr12 5663685 5663983 -138122472 + AluJo SINE Alu 1 300 -12 200 291 0 0 chr12 5664067 5664122 -138122333 + CT-rich Low_complexity Low_complexity 5 59 0 549 314 114 37 chr12 5664441 5664878 -138121577 + L3 LINE CR1 811 1281 -296 313 295 85 0 chr12 5665060 5665189 -138121266 - MIR SINE MIR -42 220 81 7583 47 14 3 chr12 5665609 5667238 -138119217 + L1PA7 LINE L1 4517 6154 0 5112 168 7 8 chr12 5667483 5668375 -138118080 - L1MB7 LINE L1 -1 6183 5293 275 235 286 8 chr12 5670031 5670150 -138116305 + MIR3 SINE MIR 54 205 -3 236 285 73 73 chr12 5670153 5670304 -138116151 + L3b LINE CR1 1293 1443 -140 1798 141 3 37 chr12 5670366 5670665 -138115790 - AluJo SINE Alu -23 289 1 183 214 24 0 chr12 5671288 5671330 -138115125 + L2 LINE L2 3263 3305 -8 386 273 31 72 chr12 5671784 5671978 -138114477 + MIR3 SINE MIR 20 205 -3 451 224 34 84 chr12 5672101 5672280 -138114175 - L2 LINE L2 0 3313 3144 300 359 60 8 chr12 5673266 5673383 -138113072 + L2 LINE L2 3150 3272 0 222 303 8 59 chr12 5673391 5673510 -138112945 - MIR SINE MIR -60 202 90 241 235 0 59 chr12 5673711 5673779 -138112676 + HsTC2 DNA Tc2 28 91 -1807 325 232 0 0 chr12 5674535 5674604 -138111851 - MER96 DNA MER1_type? 0 175 107 25 0 0 0 chr12 5674821 5674846 -138111609 + AT_rich Low_complexity Low_complexity 1 25 0 3129 235 68 50 chr12 5675366 5676309 -138110146 + L1MB7 LINE L1 16 975 -5567 * 7347 238 53 42 chr12 5676297 5678652 -138107803 + L1MB7 LINE L1 803 3130 -3552 1368 215 79 27 chr12 5678652 5679019 -138107436 + MLT1B LTR MaLR 5 390 0 7347 238 53 42 chr12 5679019 5682345 -138104110 + L1MB7 LINE L1 3130 6620 -62 538 250 183 11 chr12 5682407 5682587 -138103868 - MLT1K LTR MaLR -2 586 376 349 232 158 0 chr12 5682626 5682708 -138103747 - MLT1K LTR MaLR -305 283 189 9366 117 8 30 chr12 5683001 5683686 -138102769 - Tigger1 DNA MER2_type 0 2418 1778 1528 194 3 48 chr12 5683686 5684001 -138102454 - AluJo SINE Alu -11 301 1 9366 117 8 30 chr12 5684001 5684725 -138101730 - Tigger1 DNA MER2_type -640 1778 1040 330 64 0 0 chr12 5684735 5684782 -138101673 + Alu SINE Alu 262 308 0 * 780 254 91 14 chr12 5684779 5685055 -138101400 + MLT1C LTR MaLR 171 467 0 2254 110 0 3 chr12 5685111 5685412 -138101043 + AluSg SINE Alu 1 300 -10 676 68 19 10 chr12 5685415 5685518 -138100937 + (GAAA)n Simple_repeat Simple_repeat 1 104 0 1842 145 68 43 chr12 5685930 5686282 -138100173 - MER46B DNA MER2_type 0 236 1 1002 174 56 0 chr12 5686921 5687099 -138099356 + L1MD3 LINE L1 7797 7984 -11 209 32 0 32 chr12 5687115 5687146 -138099309 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 455 254 8 54 chr12 5687922 5688052 -138098403 - MIR SINE MIR -75 187 64 247 281 79 36 chr12 5688402 5688541 -138097914 - MIR SINE MIR -116 146 2 221 139 23 0 chr12 5688656 5688699 -138097756 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 445 255 94 13 chr12 5688841 5688990 -138097465 + MIR3 SINE MIR 27 187 -21 1687 165 0 0 chr12 5690367 5690640 -138095815 - AluJb SINE Alu -39 273 1 298 286 22 11 chr12 5691762 5691853 -138094602 - MIR SINE MIR -61 147 56 2397 91 3 0 chr12 5692220 5692528 -138093927 - AluSg1 SINE Alu 0 309 1 419 258 0 48 chr12 5693410 5693534 -138092921 + MIR3 SINE MIR 5 122 -86 233 253 0 46 chr12 5693877 5693964 -138092491 + MIR SINE MIR 174 256 -6 305 243 9 90 chr12 5694354 5694465 -138091990 + MIR3 SINE MIR 85 186 -22 357 182 149 33 chr12 5694799 5694920 -138091535 + MER5A DNA MER1_type 1 135 -54 248 180 328 0 chr12 5694921 5694982 -138091473 - Tigger5 DNA MER2_type -1 2322 2242 * 298 282 13 0 chr12 5694972 5695050 -138091405 + Tigger5 DNA MER2_type 2242 2320 -3 * 425 190 13 13 chr12 5695050 5695128 -138091327 - Tigger5 DNA MER2_type -2245 78 1 182 241 52 35 chr12 5695235 5695293 -138091162 + L2 LINE L2 3213 3271 -1 477 239 0 0 chr12 5695587 5695675 -138090780 - MIR3 SINE MIR -51 157 70 234 359 34 83 chr12 5695904 5696169 -138090286 + L2 LINE L2 2943 3194 -78 265 211 46 92 chr12 5696743 5696852 -138089603 + L3b LINE CR1 1230 1333 -250 442 285 93 89 chr12 5696928 5697174 -138089281 - MIR SINE MIR -8 254 8 443 253 62 14 chr12 5697174 5697320 -138089135 + MER117 DNA MER1_type 2 154 -43 418 221 11 21 chr12 5697325 5697420 -138089035 + MER117 DNA MER1_type 104 197 0 2670 148 26 16 chr12 5698971 5699465 -138086990 + L1MC2 LINE L1 5846 6344 0 246 128 0 0 chr12 5700582 5700621 -138085834 + (TG)n Simple_repeat Simple_repeat 1 39 0 308 356 22 85 chr12 5700927 5701419 -138085036 - L2 LINE L2 0 3272 2812 557 301 165 54 chr12 5701489 5702047 -138084408 - L2 LINE L2 -707 2607 1988 201 39 0 0 chr12 5702848 5702874 -138083581 + (TGGGGG)n Simple_repeat Simple_repeat 2 27 0 406 222 9 46 chr12 5703177 5703285 -138083170 + MER20B DNA MER1_type 3 106 -677 459 0 0 0 chr12 5703894 5703945 -138082510 + (TG)n Simple_repeat Simple_repeat 2 52 0 344 321 65 27 chr12 5704430 5704614 -138081841 - MIR3 SINE MIR -15 193 3 1914 174 67 59 chr12 5704988 5705449 -138081006 + MLT1C LTR MaLR 3 467 0 921 265 28 16 chr12 5706306 5706559 -138079896 - MIR SINE MIR -2 260 5 346 292 98 76 chr12 5706852 5707084 -138079371 + L1ME4a LINE L1 5598 5824 -297 2351 68 0 7 chr12 5707084 5707393 -138079062 + AluSc SINE Alu 1 307 -2 346 292 98 76 chr12 5707393 5707486 -138078969 + L1ME4a LINE L1 5824 5914 -207 1498 191 3 31 chr12 5707486 5707805 -138078650 + AluJo SINE Alu 1 310 -2 346 292 98 76 chr12 5707805 5707989 -138078466 + L1ME4a LINE L1 5914 6119 -2 336 150 17 17 chr12 5708278 5708338 -138078117 - MIR SINE MIR -87 175 116 283 321 28 46 chr12 5708435 5708544 -138077911 + MIR SINE MIR 3 109 -153 * 597 275 15 35 chr12 5708536 5708736 -138077719 - L2 LINE L2 0 3313 3118 240 328 90 0 chr12 5708745 5708879 -138077576 + MIR SINE MIR 117 262 0 291 325 149 30 chr12 5710303 5710571 -138075884 + L2 LINE L2 2970 3269 -3 284 250 182 13 chr12 5711826 5711980 -138074475 - MIR SINE MIR -34 228 42 211 282 64 39 chr12 5713271 5713349 -138073106 + MIR SINE MIR 152 231 -31 368 204 194 0 chr12 5713745 5713843 -138072612 - MER5B DNA MER1_type -1 177 61 420 20 0 0 chr12 5714141 5714190 -138072265 + (CA)n Simple_repeat Simple_repeat 2 50 0 221 265 15 0 chr12 5714629 5714697 -138071758 + (TTCA)n Simple_repeat Simple_repeat 3 71 0 230 284 125 11 chr12 5714719 5714807 -138071648 + L2 LINE L2 2677 2774 -540 211 188 16 16 chr12 5715560 5715624 -138070831 + CT-rich Low_complexity Low_complexity 1 64 0 183 298 64 43 chr12 5716559 5716653 -138069802 + L2 LINE L2 3178 3273 -40 248 235 244 17 chr12 5717793 5717908 -138068547 - L2 LINE L2 0 3313 3173 225 324 106 47 chr12 5718224 5718394 -138068061 - MIR3 SINE MIR -17 191 12 422 193 73 37 chr12 5718690 5718799 -138067656 - MIR3 SINE MIR -19 189 77 221 221 301 26 chr12 5720146 5720259 -138066196 + MIR SINE MIR 103 246 -16 476 230 66 71 chr12 5720602 5720798 -138065657 - MIR3 SINE MIR -6 202 8 314 319 43 7 chr12 5722948 5723089 -138063366 - MIR SINE MIR -109 153 8 306 0 0 0 chr12 5724972 5725006 -138061449 + (CA)n Simple_repeat Simple_repeat 2 35 0 471 18 0 0 chr12 5726866 5726922 -138059533 + (TG)n Simple_repeat Simple_repeat 2 57 0 194 73 55 18 chr12 5727446 5727501 -138058954 + (CCGCG)n Simple_repeat Simple_repeat 1 57 0 198 208 0 0 chr12 5729719 5729767 -138056688 + GA-rich Low_complexity Low_complexity 2 49 0 184 293 0 0 chr12 5730744 5730785 -138055670 + MIR3 SINE MIR 139 179 -29 435 319 89 0 chr12 5731598 5731755 -138054700 + MIR SINE MIR 70 240 -22 210 303 72 10 chr12 5733145 5733245 -138053210 + MIR SINE MIR 31 140 -68 184 241 3 24 chr12 5734507 5734603 -138051852 - MIR SINE MIR -3 259 196 224 300 0 0 chr12 5734604 5734664 -138051791 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 265 182 0 78 chr12 5734666 5734743 -138051712 - L1MC4 LINE L1 -1336 6706 6636 452 293 24 37 chr12 5734806 5734970 -138051485 + MIR SINE MIR 24 185 -77 * 537 244 42 36 chr12 5734968 5735125 -138051330 - MIR SINE MIR -62 146 21 331 227 118 27 chr12 5735148 5735258 -138051197 - MIR SINE MIR -63 145 26 424 364 56 0 chr12 5735385 5735547 -138050908 - MER91A DNA MER1_type -25 171 1 2346 51 0 0 chr12 5735995 5736287 -138050168 - AluY SINE Alu -19 292 1 353 322 20 18 chr12 5736766 5736943 -138049512 - MIR3 SINE MIR -28 180 4 200 180 0 60 chr12 5736991 5737041 -138049414 + CT-rich Low_complexity Low_complexity 2 48 0 1719 144 0 61 chr12 5737425 5737738 -138048717 - AluSx SINE Alu -18 294 1 596 326 82 14 chr12 5737918 5738212 -138048243 + L3 LINE CR1 1251 1564 -13 21 36 0 0 chr12 5738379 5738407 -138048048 + AT_rich Low_complexity Low_complexity 1 28 0 1357 178 74 0 chr12 5738490 5738759 -138047696 - AluJb SINE Alu -23 289 1 430 275 15 65 chr12 5738824 5739024 -138047431 + L1ME LINE L1 120 309 -5810 * 1808 225 129 117 chr12 5738992 5739483 -138046972 + L1M4 LINE L1 2463 2946 -3183 753 192 8 0 chr12 5739483 5739613 -138046842 + FLAM_C SINE Alu 7 137 -6 1808 225 129 117 chr12 5739613 5740265 -138046190 + L1M4 LINE L1 2946 3588 -2541 2680 106 0 11 chr12 5740265 5740633 -138045822 - THE1B LTR MaLR 0 364 1 1808 225 129 117 chr12 5740633 5740661 -138045794 + L1M4 LINE L1 3588 3614 -2515 360 0 0 0 chr12 5740661 5740701 -138045754 + (TA)n Simple_repeat Simple_repeat 2 41 0 1808 225 129 117 chr12 5740701 5740850 -138045605 + L1M4 LINE L1 3614 3760 -2369 351 0 0 0 chr12 5740850 5740889 -138045566 + (CA)n Simple_repeat Simple_repeat 2 40 0 1808 225 129 117 chr12 5740889 5741027 -138045428 + L1M4 LINE L1 3760 4073 -2056 1114 239 9 44 chr12 5741029 5741347 -138045108 + L1ME2 LINE L1 5734 6040 -124 673 288 118 37 chr12 5742197 5743499 -138042956 + L1ME LINE L1 715 2172 -4138 308 312 77 17 chr12 5743591 5743953 -138042502 + L1ME LINE L1 2245 2628 -3501 504 186 31 0 chr12 5743980 5744077 -138042378 + MLT1B LTR MaLR 3 102 -272 1335 240 110 6 chr12 5744078 5744432 -138042023 + MSTD LTR MaLR 2 392 -4 837 168 49 27 chr12 5744439 5744748 -138041707 + MLT1B LTR MaLR 97 390 0 717 291 101 6 chr12 5744754 5745101 -138041354 + L1ME LINE L1 2665 3044 -3085 * 764 249 76 22 chr12 5745098 5745283 -138041172 + AluJo SINE Alu 100 294 -18 3766 256 77 43 chr12 5745285 5746172 -138040283 + L1ME LINE L1 3063 3918 -2235 381 43 0 0 chr12 5746172 5746219 -138040236 + (CA)n Simple_repeat Simple_repeat 1 47 0 3766 256 77 43 chr12 5746219 5746372 -138040083 + L1ME LINE L1 3918 4064 -2089 419 33 250 0 chr12 5746372 5746432 -138040023 - MADE1 DNA Mariner -4 76 2 3766 256 77 43 chr12 5746432 5748111 -138038344 + L1ME LINE L1 4064 5889 -264 819 183 20 26 chr12 5748122 5748275 -138038180 + FRAM SINE Alu 1 143 -33 250 211 0 0 chr12 5748285 5748337 -138038118 + L1MC4 LINE L1 6652 6703 -1339 231 303 90 0 chr12 5748295 5748384 -138038071 - L1MC4 LINE L1 -1339 6703 6607 * 198 191 0 0 chr12 5748388 5748430 -138038025 + (TA)n Simple_repeat Simple_repeat 2 43 0 825 271 23 26 chr12 5748436 5748702 -138037753 + L1ME3A LINE L1 5878 6142 -11 315 233 159 101 chr12 5749331 5749520 -138036935 + MIR SINE MIR 26 225 -37 696 293 59 43 chr12 5749979 5750235 -138036220 + MIR SINE MIR 3 262 0 368 397 22 6 chr12 5750469 5750648 -138035807 + MIR3 SINE MIR 20 201 -7 24 53 0 0 chr12 5751117 5751155 -138035300 + AT_rich Low_complexity Low_complexity 1 38 0 615 306 73 46 chr12 5751386 5751867 -138034588 + L3 LINE CR1 565 1058 -519 655 199 96 143 chr12 5752273 5752512 -138033943 + MIR SINE MIR 9 227 -35 463 278 30 30 chr12 5752508 5752677 -138033778 + MIR SINE MIR 86 254 -8 * 197 263 156 50 chr12 5753184 5753350 -138033105 + MIR SINE MIR 21 227 -35 213 300 29 14 chr12 5753808 5753878 -138032577 + L2 LINE L2 3201 3271 -1 196 226 32 16 chr12 5754718 5754780 -138031675 + L2 LINE L2 2908 2970 -302 2141 172 5 52 chr12 5754994 5755401 -138031054 + MLT1B LTR MaLR 1 388 -2 192 288 15 61 chr12 5756333 5756399 -138030056 + L2 LINE L2 3209 3271 -1 342 67 0 0 chr12 5756439 5756484 -138029971 + (CA)n Simple_repeat Simple_repeat 1 45 0 246 293 37 0 chr12 5758146 5758228 -138028227 + MIR SINE MIR 91 175 -87 427 306 44 50 chr12 5758638 5758818 -138027637 - MIR3 SINE MIR -10 198 20 240 111 0 0 chr12 5759200 5759236 -138027219 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 336 245 104 43 chr12 5759768 5759931 -138026524 - MIR SINE MIR -33 229 57 400 289 122 44 chr12 5760153 5760537 -138025918 - MLT1J LTR MaLR -25 486 73 559 291 139 36 chr12 5760702 5760925 -138025530 - MIR SINE MIR -14 248 3 343 374 7 7 chr12 5761140 5761279 -138025176 - L2 LINE L2 0 3272 3134 779 296 78 21 chr12 5761606 5762044 -138024411 - L2 LINE L2 -230 3042 2578 2168 107 0 25 chr12 5762072 5762389 -138024066 + AluSx SINE Alu 1 309 -3 352 349 40 7 chr12 5764598 5764750 -138021705 - MIR SINE MIR -81 181 25 788 219 69 94 chr12 5764825 5765217 -138021238 - MLT1B LTR MaLR 0 390 9 2837 0 3 0 chr12 5765289 5765592 -138020863 - AluYa5 SINE Alu -7 304 1 315 309 12 30 chr12 5766630 5766798 -138019657 + GA-rich Low_complexity Low_complexity 1 165 0 261 0 0 0 chr12 5766978 5767007 -138019448 + (CTA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr12 5767074 5767104 -138019351 + AT_rich Low_complexity Low_complexity 1 30 0 318 358 20 55 chr12 5767473 5767552 -138018903 + L3 LINE CR1 1373 1453 -124 1346 205 78 61 chr12 5767552 5768011 -138018444 + MLT1C LTR MaLR 1 467 0 318 358 20 55 chr12 5768011 5768132 -138018323 + L3 LINE CR1 1453 1566 -11 21 71 0 0 chr12 5768178 5768220 -138018235 + AT_rich Low_complexity Low_complexity 1 42 0 988 223 19 23 chr12 5768382 5768597 -138017858 + MER20 DNA MER1_type 1 214 -5 287 273 58 33 chr12 5768691 5768812 -138017643 - MIR3 SINE MIR -82 126 3 230 315 74 62 chr12 5771571 5771733 -138014722 - L2 LINE L2 -190 3082 2919 2347 118 128 10 chr12 5771768 5772151 -138014304 - MSTA LTR MaLR 0 428 1 191 310 116 72 chr12 5772501 5772933 -138013522 - L2 LINE L2 -832 2482 2032 947 264 98 46 chr12 5773009 5773490 -138012965 - MLT1J LTR MaLR -3 508 3 662 287 11 0 chr12 5773548 5773722 -138012733 + MER5A DNA MER1_type 13 188 -1 205 326 0 0 chr12 5773769 5773818 -138012637 - L2 LINE L2 -13 3259 3211 2003 148 10 0 chr12 5773858 5774161 -138012294 - AluJb SINE Alu -6 306 1 255 271 85 39 chr12 5774729 5774858 -138011597 - L2 LINE L2 -2 3270 3136 268 268 42 14 chr12 5775792 5775863 -138010592 + MIR3 SINE MIR 87 159 -49 1284 219 107 44 chr12 5777103 5777364 -138009091 + Charlie4a DNA MER1_type 2 245 -1716 3223 83 42 16 chr12 5777364 5777751 -138008704 + MLT2A1 LTR ERVL 1 402 -42 315 0 0 0 chr12 5777751 5777786 -138008669 + (TG)n Simple_repeat Simple_repeat 2 36 0 3223 83 42 16 chr12 5777786 5777831 -138008624 + MLT2A1 LTR ERVL 402 444 0 1284 219 107 44 chr12 5777831 5778045 -138008410 + Charlie4a DNA MER1_type 245 507 -1 242 239 28 28 chr12 5778603 5778674 -138007781 + L2 LINE L2 3200 3270 -2 627 248 12 12 chr12 5778777 5778938 -138007517 - MER97a DNA MER1_type? -715 179 19 229 289 99 49 chr12 5779989 5780131 -138006324 - MIR3 SINE MIR -94 114 2 1384 71 0 0 chr12 5780219 5780387 -138006068 + AluY SINE Alu 144 311 0 264 306 36 36 chr12 5781400 5781511 -138004944 - MIR SINE MIR -81 127 17 212 302 12 12 chr12 5781546 5781632 -138004823 + MIR3 SINE MIR 82 167 -41 283 327 184 0 chr12 5782118 5782286 -138004169 + MLT1K LTR MaLR 1 199 -389 883 212 75 37 chr12 5782306 5782547 -138003908 + MLT1K LTR MaLR 326 575 -13 245 251 11 109 chr12 5782861 5783044 -138003411 - HAL1b LINE L1 -1106 242 78 2007 148 0 10 chr12 5783232 5783537 -138002918 - AluSx SINE Alu -10 302 1 471 241 68 0 chr12 5785413 5785546 -138000909 + MIR SINE MIR 109 250 -12 293 209 9 118 chr12 5785747 5785857 -138000598 + L2 LINE L2 3213 3310 -3 2286 113 0 0 chr12 5786380 5786689 -137999766 + AluSq SINE Alu 5 313 0 2063 118 31 3 chr12 5787225 5787513 -137998942 + AluSx SINE Alu 1 296 -16 207 0 0 0 chr12 5787725 5787748 -137998707 + (TG)n Simple_repeat Simple_repeat 2 24 0 187 355 37 45 chr12 5789080 5789322 -137997133 + L2 LINE L2 2816 3055 -217 1937 221 25 2 chr12 5789360 5789758 -137996697 + MER63C DNA MER1_type 3 409 -521 243 0 0 0 chr12 5789762 5789789 -137996666 + (TG)n Simple_repeat Simple_repeat 2 28 0 2073 171 95 16 chr12 5789789 5790222 -137996233 + MER63C DNA MER1_type 436 902 -28 384 328 110 74 chr12 5790278 5790668 -137995787 - L2 LINE L2 -32 3240 2837 21 0 0 0 chr12 5790757 5790778 -137995677 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr12 5790905 5790929 -137995526 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1703 184 14 0 chr12 5790931 5791209 -137995246 - AluJo SINE Alu -30 282 1 2991 60 2 50 chr12 5792735 5793138 -137993317 - L1PA7 LINE L1 -2 6152 5769 746 189 13 38 chr12 5793268 5793427 -137993028 + L1PB3 LINE L1 5996 6150 -4 3003 168 24 9 chr12 5793436 5793977 -137992478 - L1MC1 LINE L1 -304 6029 5481 216 67 0 0 chr12 5794336 5794366 -137992089 + (CAA)n Simple_repeat Simple_repeat 2 31 0 302 303 193 0 chr12 5794528 5794647 -137991808 + L2 LINE L2 2892 3033 -239 236 347 29 23 chr12 5996217 5996390 -137790065 + MIR SINE MIR 54 227 -35 228 228 35 0 chr12 5997272 5997329 -137789126 - MIR3 SINE MIR -49 159 101 1295 233 62 48 chr12 5997354 5997852 -137788603 + MLT1D LTR MaLR 1 505 0 189 0 0 0 chr12 5999761 5999782 -137786673 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 219 36 0 0 chr12 5999781 5999809 -137786646 + (GA)n Simple_repeat Simple_repeat 1 28 0 449 305 7 20 chr12 6000222 6000373 -137786082 + MIR SINE MIR 49 197 -65 784 310 89 43 chr12 6000451 6002224 -137784231 - L1MEd LINE L1 -743 5386 3533 21 36 0 0 chr12 6002288 6002316 -137784139 + AT_rich Low_complexity Low_complexity 1 28 0 1294 188 30 4 chr12 6002321 6002555 -137783900 + AluJo SINE Alu 45 284 -28 22 0 0 0 chr12 6002679 6002701 -137783754 + AT_rich Low_complexity Low_complexity 1 22 0 1640 283 32 45 chr12 6002726 6003530 -137782925 - L1MEd LINE L1 -2846 3283 2495 2471 133 3 3 chr12 6003530 6003891 -137782564 - THE1B LTR MaLR -3 361 1 1640 283 32 45 chr12 6003891 6004125 -137782330 - L1MEd LINE L1 -3634 2495 2259 431 257 46 135 chr12 6004356 6004683 -137781772 - L1ME3A LINE L1 -220 5950 5653 1219 157 4 58 chr12 6004776 6005018 -137781437 - MER46A DNA MER2_type -4 232 4 481 231 56 65 chr12 6005039 6005360 -137781095 - L1MEd LINE L1 -5017 1102 785 247 270 18 81 chr12 6005955 6006066 -137780389 + MLT1L LTR MaLR 20 123 -492 562 247 141 38 chr12 6006088 6006351 -137780104 + MLT1L LTR MaLR 322 611 -4 507 301 87 41 chr12 6006536 6006802 -137779653 + MLT1I LTR MaLR 114 391 -18 252 0 0 0 chr12 6007216 6007244 -137779211 + (A)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chr12 6007830 6007858 -137778597 + (CA)n Simple_repeat Simple_repeat 2 29 0 1346 247 56 18 chr12 6007908 6008357 -137778098 - Charlie4a DNA MER1_type -17 491 26 264 311 142 0 chr12 6008835 6008983 -137777472 - MIR SINE MIR -6 256 88 202 333 0 0 chr12 6009137 6009200 -137777255 - L3 LINE CR1 -156 1421 1359 476 274 154 48 chr12 6009271 6009628 -137776827 - L2 LINE L2 -4 3309 2915 3111 190 40 49 chr12 6009814 6010293 -137776162 + MER21B LTR ERV1 1 474 -389 2289 122 0 0 chr12 6010293 6010604 -137775851 - AluSq SINE Alu -2 311 1 3111 190 40 49 chr12 6010604 6010798 -137775657 + MER21B LTR ERV1 474 668 -195 461 132 95 3 chr12 6010797 6010886 -137775569 + MER21A LTR ERV1 773 912 0 * 6189 134 12 7 chr12 6011063 6012003 -137774452 + LTR5 LTR ERVK 1 944 -25 1456 270 123 83 chr12 6012079 6013442 -137773013 - L2 LINE L2 -621 2693 1276 332 236 173 0 chr12 6013686 6013796 -137772659 + MIR SINE MIR 63 191 -71 1491 120 87 40 chr12 6013805 6014081 -137772374 + Tigger2a DNA MER2_type 1 289 -145 11417 183 18 8 chr12 6014115 6015845 -137770610 - L1PB2 LINE L1 0 6151 4376 180 0 0 0 chr12 6015845 6015865 -137770590 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 11417 183 18 8 chr12 6015865 6017488 -137768967 - L1PB2 LINE L1 -1775 4376 2771 7127 119 52 45 chr12 6017489 6019315 -137767140 + L1PB2 LINE L1 1664 3501 -3361 867 191 20 0 chr12 6019318 6019465 -137766990 + Tigger2a DNA MER2_type 294 443 -1 604 259 27 84 chr12 6019708 6020005 -137766450 + MLT1J LTR MaLR 4 283 -228 625 276 33 0 chr12 6020142 6020294 -137766161 + MER115 DNA AcHobo 152 308 -385 304 303 155 13 chr12 6020304 6020459 -137765996 - L2 LINE L2 -252 3061 2885 217 238 0 0 chr12 6022156 6022198 -137764257 + CT-rich Low_complexity Low_complexity 3 44 0 199 373 62 8 chr12 6022674 6022872 -137763583 + MIR SINE MIR 2 212 -50 829 164 14 0 chr12 6023475 6023621 -137762834 - FAM SINE Alu -7 42 1 2601 137 29 14 chr12 6024067 6024484 -137761971 + MSTB LTR MaLR 4 426 0 200 236 258 0 chr12 6025314 6025403 -137761052 - MIR SINE MIR -115 147 36 182 266 71 53 chr12 6025521 6025634 -137760821 + MIR SINE MIR 16 130 -132 6174 97 17 2 chr12 6026110 6027075 -137759380 + L1PB1 LINE L1 5137 6113 -38 218 176 0 0 chr12 6027075 6027109 -137759346 + polypurine Low_complexity Low_complexity 2 35 0 839 89 11 56 chr12 6027110 6027290 -137759165 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 283 267 13 0 chr12 6027848 6027923 -137758532 + MIR SINE MIR 78 153 -109 1506 193 102 55 chr12 6028027 6028515 -137757940 + MER69 DNA AcHobo 2013 2523 -3 1971 119 29 10 chr12 6029412 6029722 -137756733 - L1PB1 LINE L1 -17 6134 5819 2480 60 0 13 chr12 6029722 6030024 -137756431 - AluY SINE Alu -13 298 1 1029 92 0 7 chr12 6030024 6030166 -137756289 - L1PB1 LINE L1 -544 5607 5467 388 319 63 49 chr12 6030915 6031282 -137755173 + HAL1b LINE L1 219 590 -758 983 230 84 16 chr12 6031291 6031627 -137754828 - LTR16A LTR ERVL 0 457 81 1347 160 29 19 chr12 6031905 6032208 -137754247 - MER61C LTR ERV1 -30 404 1 257 288 0 25 chr12 6032792 6032910 -137753545 + L1ME4a LINE L1 6007 6121 0 2035 170 67 22 chr12 6033396 6033802 -137752653 + MER21B LTR ERV1 1 424 -439 368 232 43 70 chr12 6033803 6033988 -137752467 + L2 LINE L2 3112 3291 -22 2488 45 7 32 chr12 6033993 6034302 -137752153 - AluY SINE Alu -10 301 1 3036 127 2 7 chr12 6034398 6034861 -137751594 + MER4C LTR ERV1 3 463 -2 2399 85 3 0 chr12 6035431 6035724 -137750731 + AluSp SINE Alu 1 294 -19 295 216 27 27 chr12 6036182 6036256 -137750199 - MER117 DNA MER1_type -119 78 5 642 238 101 11 chr12 6036317 6036506 -137749949 + L2 LINE L2 3089 3294 -19 1008 66 0 0 chr12 6036506 6036643 -137749812 + (GGAGA)n Simple_repeat Simple_repeat 5 141 0 21 0 0 0 chr12 6036693 6036714 -137749741 + AT_rich Low_complexity Low_complexity 1 21 0 526 308 45 0 chr12 6037647 6037868 -137748587 + MIR SINE MIR 29 259 -3 347 304 70 18 chr12 6040701 6040872 -137745583 - MIR SINE MIR -72 190 11 182 150 25 0 chr12 6041009 6041049 -137745406 + GA-rich Low_complexity Low_complexity 5 45 0 206 231 0 0 chr12 6041492 6041531 -137744924 + (CA)n Simple_repeat Simple_repeat 1 39 0 240 267 58 42 chr12 6041531 6041651 -137744804 - L3b LINE CR1 -184 1399 1278 667 198 81 137 chr12 6042005 6042157 -137744298 + MER112 DNA MER1_type 23 157 -103 2028 62 11 19 chr12 6042157 6042417 -137744038 - AluY SINE Alu -9 302 45 667 198 81 137 chr12 6042417 6042512 -137743943 + MER112 DNA MER1_type 157 256 -4 330 277 106 8 chr12 6042825 6043006 -137743449 + MIR SINE MIR 62 262 0 182 288 38 25 chr12 6043583 6043663 -137742792 + MIR SINE MIR 63 143 -65 261 244 12 24 chr12 6044491 6044573 -137741882 - MIR3 SINE MIR -29 179 99 218 32 32 0 chr12 6045710 6045741 -137740714 + (TC)n Simple_repeat Simple_repeat 2 33 0 241 236 197 8 chr12 6046572 6046699 -137739756 + L2 LINE L2 3159 3309 -4 2011 171 32 6 chr12 6049436 6049775 -137736680 - MER7A DNA MER2_type 0 346 1 315 288 48 16 chr12 6050912 6051037 -137735418 - MIR SINE MIR -34 228 100 1078 213 4 30 chr12 6052847 6053077 -137733378 - MER58A DNA MER1_type 0 224 1 321 280 119 42 chr12 6053552 6053788 -137732667 + L2 LINE L2 2606 2859 -455 399 233 11 116 chr12 6054152 6054341 -137732114 + MIR SINE MIR 93 261 -1 401 311 102 0 chr12 6054440 6054607 -137731848 + MIR3 SINE MIR 25 208 0 316 368 42 58 chr12 6056763 6057141 -137729314 + L2 LINE L2 2897 3268 -4 2649 49 0 0 chr12 6057392 6057696 -137728759 + AluY SINE Alu 1 304 -7 283 338 49 21 chr12 6058900 6059042 -137727413 - L2 LINE L2 0 3272 3127 223 286 170 20 chr12 6060621 6060768 -137725687 - L3 LINE CR1 -6 1571 1403 254 294 109 50 chr12 6061144 6061263 -137725192 - L2 LINE L2 -1 3271 3146 228 275 43 14 chr12 6062452 6062521 -137723934 + MIR SINE MIR 52 122 -86 269 275 30 46 chr12 6062848 6062979 -137723476 - MIR3 SINE MIR -45 163 35 310 273 13 0 chr12 6063319 6063396 -137723059 + GA-rich Low_complexity Low_complexity 1 78 0 1582 67 91 0 chr12 6064130 6064339 -137722116 - MER30 DNA MER1_type 0 230 3 1526 242 116 21 chr12 6064829 6064921 -137721534 - LTR48B LTR ERV1 0 644 562 2157 83 35 3 chr12 6064921 6065210 -137721245 + AluSq SINE Alu 1 298 -15 1526 242 116 21 chr12 6065210 6065633 -137720822 - LTR48B LTR ERV1 -82 562 80 332 216 41 41 chr12 6065679 6065776 -137720679 - MER34 LTR ERV1 -445 97 1 225 227 91 23 chr12 6065776 6065864 -137720591 + L2 LINE L2 3133 3226 -46 189 318 84 9 chr12 6066217 6066324 -137720131 - L2 LINE L2 -3 3310 3196 229 325 53 30 chr12 6066598 6066767 -137719688 - L2 LINE L2 -565 2749 2577 420 287 43 37 chr12 6067705 6067869 -137718586 - MIR SINE MIR -50 212 48 184 129 0 0 chr12 6068281 6068312 -137718143 + L2 LINE L2 3238 3268 -4 1792 177 0 6 chr12 6068570 6068881 -137717574 + AluJb SINE Alu 1 309 -3 201 312 26 13 chr12 6068966 6069043 -137717412 - L3 LINE CR1 -14 1563 1486 1771 174 24 10 chr12 6069213 6069383 -137717072 - AluJo SINE Alu -10 302 125 240 35 0 0 chr12 6069383 6069412 -137717043 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1771 174 24 10 chr12 6069412 6069539 -137716916 - AluJo SINE Alu -187 125 1 249 274 55 14 chr12 6069541 6069614 -137716841 - L2 LINE L2 -26 3246 3171 336 306 100 12 chr12 6069956 6070126 -137716329 + L1ME LINE L1 5512 5696 -425 551 134 0 0 chr12 6070129 6070211 -137716244 + AluJ/FLAM SINE Alu 21 102 -210 485 249 83 83 chr12 6070883 6071088 -137715367 - MIR SINE MIR -38 224 20 3013 107 30 0 chr12 6071113 6071553 -137714902 - L1PA13 LINE L1 0 6163 5711 2011 143 7 0 chr12 6072375 6072669 -137713786 - AluSx SINE Alu -13 299 4 181 319 208 0 chr12 6073189 6073333 -137713122 - MIR3 SINE MIR -29 179 6 1328 202 90 42 chr12 6074105 6074462 -137711993 + MLT1A2 LTR MaLR 1 374 0 327 276 39 24 chr12 6074484 6074611 -137711844 + MIR SINE MIR 134 262 0 391 78 0 31 chr12 6074690 6074754 -137711701 + MADE1 DNA Mariner 19 80 0 184 291 79 63 chr12 6074778 6074905 -137711550 - L3 LINE CR1 -3 1574 1446 407 339 58 5 chr12 6075038 6075262 -137711193 + MIR SINE MIR 5 240 -22 460 307 126 53 chr12 6075690 6076120 -137710335 + HAL1 LINE L1 4 464 -2043 1996 259 75 37 chr12 6076134 6076273 -137710182 + HAL1 LINE L1 1074 1206 -1301 1785 172 0 14 chr12 6076273 6076570 -137709885 - AluJb SINE Alu -19 293 1 1996 259 75 37 chr12 6076570 6077272 -137709183 + HAL1 LINE L1 1206 1947 -560 2526 68 0 0 chr12 6077680 6077987 -137708468 + AluY SINE Alu 1 307 -4 554 343 82 8 chr12 6078053 6078293 -137708162 - L2 LINE L2 -695 2619 2341 210 37 0 0 chr12 6078293 6078320 -137708135 + (GGA)n Simple_repeat Simple_repeat 2 28 0 554 343 82 8 chr12 6078320 6078446 -137708009 - L2 LINE L2 -973 2341 2226 21 0 0 0 chr12 6078754 6078775 -137707680 + AT_rich Low_complexity Low_complexity 1 21 0 718 277 100 31 chr12 6080315 6080705 -137705750 - MER113 DNA MER1_type? -104 417 1 212 314 0 0 chr12 6080772 6080823 -137705632 + (CA)n Simple_repeat Simple_repeat 2 52 0 250 304 126 33 chr12 6080948 6081162 -137705293 + MARNA DNA Mariner 175 408 -178 280 222 48 0 chr12 6081476 6081539 -137704916 - MIR SINE MIR -158 104 39 3645 126 8 4 chr12 6081544 6082069 -137704386 + MER1A DNA MER1_type 1 527 0 236 279 58 19 chr12 6082547 6082651 -137703804 - MIR3 SINE MIR -11 197 90 483 156 31 4 chr12 6083883 6084121 -137702334 + (TA)n Simple_repeat Simple_repeat 1 244 0 621 203 6 0 chr12 6084134 6084484 -137701971 + (TA)n Simple_repeat Simple_repeat 1 352 0 417 170 29 6 chr12 6084495 6084666 -137701789 + (TA)n Simple_repeat Simple_repeat 1 175 0 236 176 0 39 chr12 6084701 6084752 -137701703 + LTR66 LTR ERVL 391 439 -171 375 23 0 0 chr12 6084833 6084877 -137701578 + (CA)n Simple_repeat Simple_repeat 1 44 0 2154 112 7 3 chr12 6084989 6085285 -137701170 - AluSg SINE Alu -13 297 1 376 269 59 59 chr12 6085493 6085679 -137700776 + LTR67 LTR ERVL 363 548 -9 255 220 100 60 chr12 6086386 6086486 -137699969 + MIR SINE MIR 18 121 -141 219 69 0 0 chr12 6087231 6087260 -137699195 + (TG)n Simple_repeat Simple_repeat 1 29 0 1053 260 136 68 chr12 6088231 6088877 -137697578 + MER21B LTR ERV1 24 713 -150 1521 211 40 3 chr12 6090172 6090522 -137695933 - MLT1A1 LTR MaLR -2 363 1 347 291 36 0 chr12 6090865 6091030 -137695425 + (CACAC)n Simple_repeat Simple_repeat 5 175 0 345 319 34 15 chr12 6091079 6091605 -137694850 + (CACAC)n Simple_repeat Simple_repeat 1 535 0 724 301 99 17 chr12 6091958 6092303 -137694152 - LTR16C LTR ERVL -30 461 89 464 272 50 28 chr12 6092437 6092617 -137693838 - MIR SINE MIR -65 197 14 229 169 138 15 chr12 6093470 6093493 -137692962 - REP3 LTR ERV -359 203 173 411 240 208 42 chr12 6093493 6093685 -137692770 + MLT1J2 LTR MaLR 4 227 -223 201 74 0 0 chr12 6095591 6095618 -137690837 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 240 228 0 0 chr12 6096122 6096179 -137690276 + GA-rich Low_complexity Low_complexity 2 58 0 1844 155 30 0 chr12 6097006 6097309 -137689146 + AluSx SINE Alu 1 312 0 309 109 0 0 chr12 6098560 6098615 -137687840 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 199 222 22 0 chr12 6098654 6098699 -137687756 - MIR SINE MIR -16 246 201 578 302 105 70 chr12 6098939 6099876 -137686579 - L2 LINE L2 -6 3307 2335 255 270 250 0 chr12 6100143 6100243 -137686212 + MIR SINE MIR 19 143 -65 1538 174 0 24 chr12 6102126 6102414 -137684041 + AluJo SINE Alu 1 281 -31 702 246 23 17 chr12 6102803 6102978 -137683477 + MIR SINE MIR 63 238 -24 236 247 0 25 chr12 6102985 6103066 -137683389 + (CGTG)n Simple_repeat Simple_repeat 1 79 0 263 320 191 0 chr12 6103111 6103258 -137683197 + MIR SINE MIR 71 245 -17 256 271 93 86 chr12 6105010 6105150 -137681305 - L2 LINE L2 -7 3265 3125 513 267 103 44 chr12 6105200 6105473 -137680982 + MLT1I LTR MaLR 114 402 -7 546 312 158 6 chr12 6105576 6105906 -137680549 + L2 LINE L2 2929 3308 -5 189 256 23 0 chr12 6107001 6107044 -137679411 + L2 LINE L2 3266 3309 -4 348 253 44 11 chr12 6109193 6109284 -137677171 + L3 LINE CR1 1419 1512 -65 270 0 0 0 chr12 6109915 6109945 -137676510 + (CA)n Simple_repeat Simple_repeat 1 30 0 414 57 0 0 chr12 6110921 6110974 -137675481 + (CA)n Simple_repeat Simple_repeat 2 54 0 262 260 14 14 chr12 6110975 6111048 -137675407 + G-rich Low_complexity Low_complexity 1 73 0 255 61 0 0 chr12 6111655 6111688 -137674767 + (TG)n Simple_repeat Simple_repeat 2 34 0 410 175 48 16 chr12 6111853 6111954 -137674501 + MER5A DNA MER1_type 4 109 -80 254 322 43 26 chr12 6112173 6112288 -137674167 - MIR3 SINE MIR -7 201 85 281 294 46 37 chr12 6112347 6112456 -137673999 - MIR3 SINE MIR -39 169 60 2345 88 0 0 chr12 6112543 6112850 -137673605 - AluY SINE Alu -4 307 1 649 272 160 19 chr12 6113643 6114204 -137672251 - L2 LINE L2 0 3313 2605 7189 52 6 2 chr12 6114739 6115702 -137670753 + L1PA6 LINE L1 5187 6152 -2 359 255 0 11 chr12 6115801 6115895 -137670560 + MER94 DNA DNA 8 100 -34 195 100 0 0 chr12 6116304 6116334 -137670121 + (ATG)n Simple_repeat Simple_repeat 3 32 0 2185 226 181 25 chr12 6116371 6117325 -137669130 + L2 LINE L2 1933 3070 -243 225 0 0 0 chr12 6117379 6117404 -137669051 + (CA)n Simple_repeat Simple_repeat 2 26 0 1748 264 70 27 chr12 6117666 6118724 -137667731 - L1ME3A LINE L1 -315 5838 4722 350 299 84 13 chr12 6118785 6118939 -137667516 - L1ME3A LINE L1 -4373 1937 1773 782 308 61 17 chr12 6118951 6119600 -137666855 - L1ME3A LINE L1 -4585 1725 957 848 103 0 0 chr12 6119601 6119717 -137666738 + AluSg/x SINE Alu 178 293 -17 234 62 0 0 chr12 6119730 6119762 -137666693 + (TG)n Simple_repeat Simple_repeat 2 33 0 214 235 12 24 chr12 6119762 6119847 -137666608 + (TA)n Simple_repeat Simple_repeat 2 85 0 249 304 141 44 chr12 6119950 6120220 -137666235 - L1ME3A LINE L1 -5307 812 517 419 345 55 63 chr12 6120361 6120741 -137665714 - L1ME3A LINE L1 -5739 380 4 438 254 116 7 chr12 6120761 6120899 -137665556 + L2 LINE L2 3160 3312 -1 250 226 151 21 chr12 6121058 6121151 -137665304 + MIR3 SINE MIR 87 191 -17 346 328 9 26 chr12 6122358 6122474 -137663981 + MIR SINE MIR 50 163 -99 243 284 125 97 chr12 6122922 6123098 -137663357 + MIR SINE MIR 62 242 -20 221 360 88 8 chr12 6123303 6123428 -137663027 - L2 LINE L2 -5 3267 3133 1751 120 11 35 chr12 6123940 6124092 -137662363 - AluSc SINE Alu -32 277 134 285 98 0 0 chr12 6124092 6124133 -137662322 + (TG)n Simple_repeat Simple_repeat 2 42 0 1751 120 11 35 chr12 6124133 6124264 -137662191 - AluSc SINE Alu -175 134 1 252 292 67 8 chr12 6124421 6124541 -137661914 - L2 LINE L2 -7 3265 3139 351 297 93 17 chr12 6125032 6125150 -137661305 + MIR SINE MIR 18 144 -64 237 267 46 61 chr12 6125267 6125398 -137661057 + MIR SINE MIR 109 237 -25 1046 168 0 5 chr12 6125724 6125909 -137660546 - FRAM SINE Alu 0 176 1 3102 214 17 12 chr12 6125910 6126564 -137659891 - L1ME1 LINE L1 -8 6158 5502 2769 143 49 92 chr12 6126574 6127181 -137659274 - L1MC3 LINE L1 -7 7778 7198 393 177 57 12 chr12 6127181 6127276 -137659179 - MLT1F1 LTR MaLR -442 125 35 298 292 88 40 chr12 6127688 6127914 -137658541 + MIR SINE MIR 26 262 0 393 375 73 30 chr12 6127920 6128248 -137658207 - L2 LINE L2 -5 3267 2926 196 344 57 13 chr12 6128432 6128589 -137657866 - MIR3 SINE MIR -5 203 40 337 340 111 34 chr12 6129251 6129639 -137656816 + L2 LINE L2 1182 1599 -1715 794 185 12 56 chr12 6129656 6129818 -137656637 - MER5A DNA MER1_type -5 184 30 455 313 82 10 chr12 6129906 6130101 -137656354 - MIR SINE MIR 0 262 54 297 326 73 22 chr12 6130272 6130450 -137656005 - L2 LINE L2 -1354 1960 1774 565 292 97 38 chr12 6130502 6130790 -137655665 + L2 LINE L2 2196 2500 -814 221 292 212 26 chr12 6130923 6131036 -137655419 + L2 LINE L2 3136 3269 -3 324 125 0 62 chr12 6131809 6131873 -137654582 - Alu SINE Alu 0 302 243 810 275 12 33 chr12 6132446 6132690 -137653765 + MIR SINE MIR 23 261 -1 552 175 19 0 chr12 6132690 6132850 -137653605 + (CAT)n Simple_repeat Simple_repeat 1 163 0 859 154 0 17 chr12 6132892 6133246 -137653209 + (CAT)n Simple_repeat Simple_repeat 1 347 0 187 300 67 56 chr12 6134264 6134354 -137652101 + MIR3 SINE MIR 69 159 -49 376 94 0 19 chr12 6134380 6134433 -137652022 + Tigger5 DNA MER2_type 1 52 -2271 422 207 12 0 chr12 6134448 6134530 -137651925 + Tigger5 DNA MER2_type 2239 2321 -2 463 356 62 6 chr12 6134602 6135003 -137651452 + L2 LINE L2 2762 3219 -94 229 287 161 35 chr12 6135546 6135720 -137650735 - L3b LINE CR1 -208 1375 1180 375 233 63 63 chr12 6135975 6136134 -137650321 - MER5A DNA MER1_type 0 189 31 204 385 28 18 chr12 6137098 6137207 -137649248 + L3b LINE CR1 1275 1384 -199 206 313 30 0 chr12 6138397 6138464 -137647991 + (CATG)n Simple_repeat Simple_repeat 2 70 0 807 183 0 0 chr12 6138545 6138725 -137647730 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 597 286 25 37 chr12 6138739 6138980 -137647475 - MIR SINE MIR -12 250 13 189 0 0 0 chr12 6140026 6140047 -137646408 + (CCCCCA)n Simple_repeat Simple_repeat 4 24 0 1713 248 82 19 chr12 6141095 6141559 -137644896 + MER77 LTR ERV1 77 569 -36 8567 137 16 1 chr12 6141864 6144002 -137642453 - L1PA10 LINE L1 -9 6159 4002 284 307 58 14 chr12 6144398 6144537 -137641918 + MIR SINE MIR 17 159 -69 275 254 0 0 chr12 6144594 6144649 -137641806 - L2 LINE L2 -8 3264 3210 303 296 59 15 chr12 6144700 6144835 -137641620 + L1MC5 LINE L1 7773 7913 -48 1526 181 10 36 chr12 6144846 6145155 -137641300 - AluJo SINE Alu -11 301 1 322 294 72 8 chr12 6145158 6145316 -137641139 - MIR SINE MIR -59 203 34 192 40 0 0 chr12 6145830 6145855 -137640600 + (TG)n Simple_repeat Simple_repeat 1 25 0 267 215 0 0 chr12 6146896 6146961 -137639494 + (TG)n Simple_repeat Simple_repeat 1 65 0 308 321 36 14 chr12 6147051 6147191 -137639264 + L3 LINE CR1 235 377 -1200 387 247 113 57 chr12 6147246 6147493 -137638962 - L1MC4a LINE L1 -1642 6166 5906 203 250 125 0 chr12 6147504 6147568 -137638887 + L3 LINE CR1 439 510 -1067 225 140 0 123 chr12 6147885 6147942 -137638513 + L2 LINE L2 3262 3311 -2 513 287 160 0 chr12 6149019 6149207 -137637248 + MIR SINE MIR 42 259 -3 244 229 186 0 chr12 6149322 6149392 -137637063 + L2 LINE L2 3190 3272 -41 222 118 0 0 chr12 6149409 6149443 -137637012 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 334 240 140 0 chr12 6150000 6150100 -137636355 + MIR SINE MIR 33 146 -62 292 266 180 47 chr12 6150731 6150964 -137635491 + L1ME4a LINE L1 5856 6119 -2 2109 138 0 0 chr12 6151087 6151398 -137635057 + AluSx SINE Alu 1 311 -1 1500 325 168 21 chr12 6152927 6153422 -137633033 + L3 LINE CR1 506 927 -650 6571 89 9 3 chr12 6153422 6154631 -137631824 + L1PA11 LINE L1 4961 6174 0 1500 325 168 21 chr12 6154631 6155064 -137631391 + L3 LINE CR1 927 1570 -7 299 273 47 47 chr12 6155541 6155669 -137630786 + MIR3 SINE MIR 78 205 -3 384 97 0 0 chr12 6156629 6156691 -137629764 + (TC)n Simple_repeat Simple_repeat 1 62 0 283 306 153 0 chr12 6158620 6158731 -137627724 - L2 LINE L2 -8 3264 3137 391 274 174 28 chr12 6159148 6159360 -137627095 + MIR SINE MIR 7 249 -13 1595 169 36 10 chr12 6159818 6160120 -137626335 + AluJb SINE Alu 1 310 -2 230 247 195 0 chr12 6160707 6160784 -137625671 - L2 LINE L2 -14 3299 3208 317 360 95 16 chr12 6161624 6161866 -137624589 + L3b LINE CR1 1262 1522 -61 284 301 27 70 chr12 6162034 6162220 -137624235 - MIR SINE MIR -57 205 28 180 0 0 0 chr12 6163126 6163146 -137623309 + (T)n Simple_repeat Simple_repeat 1 20 0 259 224 0 0 chr12 6164113 6164162 -137622293 + L2 LINE L2 3251 3299 -14 1058 289 109 63 chr12 6165211 6165363 -137621092 - L2 LINE L2 -6 3307 3163 2358 94 0 0 chr12 6165363 6165672 -137620783 + AluSg SINE Alu 1 309 -1 1058 289 109 63 chr12 6165672 6165937 -137620518 - L2 LINE L2 -150 3163 2912 1838 137 14 7 chr12 6165937 6166229 -137620226 + AluSx SINE Alu 1 294 -18 1058 289 109 63 chr12 6166229 6166633 -137619822 - L2 LINE L2 -401 2912 2440 2167 285 123 9 chr12 6167220 6168420 -137618035 + L2 LINE L2 1950 3296 -17 318 26 0 0 chr12 6168561 6168600 -137617855 + (GA)n Simple_repeat Simple_repeat 2 40 0 203 257 29 0 chr12 6168607 6168677 -137617778 + GA-rich Low_complexity Low_complexity 2 73 0 373 267 125 8 chr12 6168827 6168947 -137617508 + MIR3 SINE MIR 40 173 -35 243 0 0 0 chr12 6169050 6169077 -137617378 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 707 279 59 28 chr12 6169105 6169350 -137617105 + MIR SINE MIR 3 251 -11 575 271 30 96 chr12 6169569 6169872 -137616583 + L1M4 LINE L1 2610 2892 -3254 2042 123 0 0 chr12 6169874 6170167 -137616288 + AluSx SINE Alu 1 293 -19 409 183 0 0 chr12 6170225 6170296 -137616159 + L2 LINE L2 3207 3277 -36 1273 311 75 23 chr12 6170382 6171467 -137614988 + L1M4 LINE L1 3047 4187 -1959 2167 110 3 0 chr12 6171467 6171776 -137614679 + AluY SINE Alu 1 310 -1 25719 72 6 0 chr12 6171788 6175073 -137611382 + L1P LINE L1 5 3307 -2839 228 208 21 0 chr12 6175073 6175121 -137611334 - Alu SINE Alu -221 82 34 194 310 80 18 chr12 6175227 6175340 -137611115 + L2 LINE L2 2133 2252 -1062 434 96 108 12 chr12 6175403 6175486 -137610969 - Alu SINE Alu -6 304 214 223 393 74 0 chr12 6176065 6176200 -137610255 + L2 LINE L2 2920 3064 -208 27 0 0 0 chr12 6176334 6176361 -137610094 + AT_rich Low_complexity Low_complexity 1 27 0 352 317 42 0 chr12 6176467 6176609 -137609846 + L1ME3A LINE L1 2539 2686 -3460 507 218 174 3 chr12 6176668 6176898 -137609557 + L1P4 LINE L1 5171 5431 -735 293 303 57 14 chr12 6176915 6177126 -137609329 + L1ME3A LINE L1 4942 5161 -985 * 787 305 79 16 chr12 6177113 6177608 -137608847 + L1ME3A LINE L1 5425 5950 -220 1822 129 6 39 chr12 6177850 6178161 -137608294 - AluJo SINE Alu -10 302 2 206 274 9 151 chr12 6178236 6178342 -137608113 - L3 LINE CR1 -59 1518 1428 292 276 71 39 chr12 6178841 6178968 -137607487 - L3 LINE CR1 -143 1434 1304 285 29 0 0 chr12 6179004 6179038 -137607417 + (TG)n Simple_repeat Simple_repeat 2 35 0 180 186 29 43 chr12 6179594 6179664 -137606791 + GA-rich Low_complexity Low_complexity 5 73 0 1548 248 46 37 chr12 6180515 6181110 -137605345 + L2 LINE L2 2704 3300 -13 267 316 0 11 chr12 6181118 6181213 -137605242 - MIR SINE MIR -102 160 67 262 299 46 11 chr12 6181231 6181318 -137605137 + MIR SINE MIR 32 121 -87 1859 142 75 33 chr12 6181339 6181699 -137604756 + THE1C LTR MaLR 1 375 0 875 298 182 26 chr12 6182198 6182769 -137603686 + L2 LINE L2 2185 2844 -470 617 278 139 22 chr12 6182856 6183079 -137603376 + MIR SINE MIR 6 254 -8 626 288 77 77 chr12 6183090 6183389 -137603066 + L2 LINE L2 2970 3268 -4 560 289 66 53 chr12 6183503 6183731 -137602724 + MLT1J LTR MaLR 6 236 -275 2328 170 31 24 chr12 6185141 6185195 -137601260 + MSTB LTR MaLR 1 53 -373 2480 37 10 0 chr12 6185195 6185490 -137600965 + AluY SINE Alu 1 298 -13 2328 170 31 24 chr12 6185490 6185858 -137600597 + MSTB LTR MaLR 53 426 0 1406 226 133 38 chr12 6186542 6186985 -137599470 + MLT1D LTR MaLR 21 505 0 632 310 99 48 chr12 6186996 6187607 -137598848 - L2 LINE L2 -201 3071 2430 272 198 0 37 chr12 6188930 6189011 -137597444 + CT-rich Low_complexity Low_complexity 5 82 0 328 389 7 0 chr12 6190231 6190375 -137596080 + L1ME4a LINE L1 5779 5923 -198 236 294 56 16 chr12 6190382 6190508 -137595947 + L1ME4a LINE L1 5991 6121 0 736 277 121 51 chr12 6192987 6193417 -137593038 + LTR33A LTR ERVL 64 523 0 1227 241 60 52 chr12 6193492 6193610 -137592845 + LTR16C LTR ERVL 67 183 -308 180 97 0 0 chr12 6193610 6193641 -137592814 + (CA)n Simple_repeat Simple_repeat 2 32 0 1227 241 60 52 chr12 6193641 6193698 -137592757 + LTR16C LTR ERVL 183 238 -253 1545 227 13 37 chr12 6193698 6194072 -137592383 + MLT1A1 LTR MaLR 1 365 0 1227 241 60 52 chr12 6194072 6194314 -137592141 + LTR16C LTR ERVL 238 488 -3 1952 135 0 13 chr12 6195815 6196119 -137590336 - AluJo SINE Alu -8 304 5 2256 216 61 22 chr12 6196144 6196540 -137589915 - MER119 DNA MER1_type -5 578 152 2515 62 7 3 chr12 6196540 6196847 -137589608 + AluY SINE Alu 1 308 -3 2256 216 61 22 chr12 6196847 6197005 -137589450 - MER119 DNA MER1_type -431 152 2 186 43 0 0 chr12 6197265 6197288 -137589167 + (CAA)n Simple_repeat Simple_repeat 2 24 0 278 175 12 0 chr12 6199413 6199493 -137586962 + (CA)n Simple_repeat Simple_repeat 1 81 0 848 266 192 16 chr12 6199772 6200204 -137586251 + LTR33A LTR ERVL 8 515 -8 516 221 207 9 chr12 6200803 6201016 -137585439 + MIR SINE MIR 8 262 0 2412 146 53 27 chr12 6201380 6201791 -137584664 + MSTA LTR MaLR 1 422 -6 386 178 0 99 chr12 6201849 6201950 -137584505 + L1MB8 LINE L1 4018 4108 -2038 1340 83 0 0 chr12 6201951 6202119 -137584336 - AluY SINE Alu -10 301 134 2499 73 0 0 chr12 6202120 6202421 -137584034 - AluY SINE Alu -10 301 1 5089 180 50 39 chr12 6202421 6204412 -137582043 + L1MB8 LINE L1 4099 6110 -68 311 151 21 54 chr12 6204492 6204585 -137581870 + L1MB8 LINE L1 6089 6178 0 319 309 9 9 chr12 6204623 6204733 -137581722 + MIR SINE MIR 16 125 -83 603 255 121 35 chr12 6206266 6206497 -137579958 + MIR SINE MIR 4 254 -8 340 267 84 0 chr12 6208433 6208564 -137577891 - MER103 DNA DNA -2 164 23 2353 106 0 6 chr12 6208954 6209265 -137577190 - AluSx SINE Alu -3 309 1 558 319 143 21 chr12 6209726 6210161 -137576294 - L2 LINE L2 -9 3304 2817 306 0 0 0 chr12 6213912 6213946 -137572509 + (CA)n Simple_repeat Simple_repeat 2 35 0 246 400 7 0 chr12 6214137 6214287 -137572168 + L2 LINE L2 2554 2704 -610 221 305 93 68 chr12 6214760 6215039 -137571416 - L2 LINE L2 -23 3249 2964 514 237 59 7 chr12 6215996 6216148 -137570307 - MIR SINE MIR -19 243 84 270 56 0 0 chr12 6217788 6217824 -137568631 + (TG)n Simple_repeat Simple_repeat 2 37 0 233 292 45 0 chr12 6218023 6218112 -137568343 + MIR SINE MIR 26 118 -90 608 220 31 31 chr12 6221372 6221531 -137564924 + L1MD2 LINE L1 6199 6357 -2 412 232 33 132 chr12 6221907 6222179 -137564276 + MER112 DNA MER1_type 8 252 -8 267 322 0 0 chr12 6222258 6222348 -137564107 + (TG)n Simple_repeat Simple_repeat 1 90 0 195 239 0 0 chr12 6222373 6222440 -137564015 + (TG)n Simple_repeat Simple_repeat 1 67 0 329 250 29 44 chr12 6222787 6222923 -137563532 + MIR SINE MIR 20 153 -109 201 178 22 22 chr12 6223141 6223186 -137563269 + CT-rich Low_complexity Low_complexity 2 46 0 186 71 0 0 chr12 6223186 6223214 -137563241 + (A)n Simple_repeat Simple_repeat 1 28 0 327 215 0 0 chr12 6223870 6223935 -137562520 + MLT1K LTR MaLR 511 575 -13 279 283 243 0 chr12 6224066 6224218 -137562237 - MIR SINE MIR -6 256 68 1789 150 7 29 chr12 6224234 6224540 -137561915 - AluJo SINE Alu -3 309 11 391 182 34 0 chr12 6225762 6225850 -137560605 + L1ME4a LINE L1 5965 6055 -66 * 5370 164 29 41 chr12 6225845 6227280 -137559175 - L1MA10 LINE L1 -2 6220 4788 294 167 0 6 chr12 6227280 6227338 -137559117 - L1MA10 LINE L1 -1579 4455 4400 1136 89 0 13 chr12 6227341 6227498 -137558957 - MER4C LTR ERV1 0 465 311 2481 77 28 25 chr12 6227498 6227851 -137558604 - MER4C LTR ERV1 -111 354 1 5863 229 61 48 chr12 6227851 6229668 -137556787 - L1MA10 LINE L1 -1636 4398 2606 3301 45 0 0 chr12 6229668 6230120 -137556335 - L1PA5 LINE L1 0 6154 5756 5863 229 61 48 chr12 6230120 6231553 -137554902 - L1MA10 LINE L1 -3428 2606 3 3402 250 116 52 chr12 6231913 6233294 -137553161 + L1ME3A LINE L1 18 1486 -4937 1223 269 35 59 chr12 6233295 6233736 -137552719 + L1ME3A LINE L1 1875 2292 -4830 2252 143 0 15 chr12 6233736 6234078 -137552377 + MER1B DNA MER1_type 1 337 0 1223 269 35 59 chr12 6234078 6234378 -137552077 + L1ME3A LINE L1 2292 2598 -4524 409 262 6 38 chr12 6234758 6234941 -137551514 + MER31-int LTR ERV1 973 1149 -5182 180 0 0 0 chr12 6235374 6235394 -137551061 + (A)n Simple_repeat Simple_repeat 1 20 0 337 196 14 98 chr12 6235571 6235714 -137550741 + LTR57-int LTR ERVL 622 752 -4591 * 892 209 42 58 chr12 6235656 6236196 -137550259 + MER31-int LTR ERV1 834 2028 -2843 * 899 232 21 64 chr12 6236089 6236369 -137550086 + LTR57-int LTR ERVL 1225 1492 -3851 664 202 65 85 chr12 6236455 6236703 -137549752 + MER31-int LTR ERV1 1737 1979 -2957 * 2077 195 68 102 chr12 6236702 6237747 -137548708 + MER31-int LTR ERV1 3455 4463 -1868 392 214 22 0 chr12 6237747 6237836 -137548619 + MER34B LTR ERV1 470 560 -5 1401 232 129 7 chr12 6237845 6238293 -137548162 + L1ME3A LINE L1 3612 4114 -2827 298 171 53 40 chr12 6238497 6238573 -137547882 - MIR SINE MIR -122 140 64 653 266 65 12 chr12 6238625 6238873 -137547582 - MIR SINE MIR 0 262 2 238 219 0 16 chr12 6239405 6239469 -137546986 + GA-rich Low_complexity Low_complexity 2 64 0 638 245 75 75 chr12 6239498 6239751 -137546704 - MER102a DNA MER1_type -4 326 74 233 314 89 32 chr12 6239818 6239942 -137546513 + MIR SINE MIR 4 134 -128 3078 261 60 10 chr12 6240037 6240999 -137545456 + L1ME3A LINE L1 5941 6948 -17 254 298 32 11 chr12 6241826 6241920 -137544535 - MIR SINE MIR -10 252 157 406 272 48 34 chr12 6244147 6244294 -137542161 - MER91A DNA MER1_type -45 151 3 401 286 48 48 chr12 6244306 6244453 -137542002 - MIR SINE MIR -111 151 5 1316 267 170 17 chr12 6244624 6245514 -137540941 + L2 LINE L2 2272 3311 -2 424 309 44 19 chr12 6245517 6245671 -137540784 - MIR SINE MIR -75 133 25 1950 120 45 0 chr12 6245813 6246105 -137540350 + AluSq SINE Alu 1 305 -8 891 241 191 26 chr12 6247237 6247577 -137538878 + LTR33 LTR ERVL 31 426 -95 298 319 44 67 chr12 6247656 6247791 -137538664 - MIR3 SINE MIR -32 176 45 252 237 105 13 chr12 6247798 6247874 -137538581 + MIR SINE MIR 179 261 -1 544 224 26 9 chr12 6248070 6248186 -137538269 - MER91A DNA MER1_type -78 118 1 1413 178 10 40 chr12 6248488 6248791 -137537664 + AluJb SINE Alu 1 294 -18 478 291 166 0 chr12 6249272 6249471 -137536984 - MIR SINE MIR -10 252 21 2204 56 0 0 chr12 6249777 6250043 -137536412 - AluY SINE Alu -12 299 34 189 344 76 8 chr12 6250546 6250677 -137535778 - MIR3 SINE MIR -48 160 21 307 262 97 10 chr12 6252268 6252371 -137534084 + L3b LINE CR1 1268 1379 -204 571 256 70 92 chr12 6252435 6252662 -137533793 - MIR SINE MIR -7 255 34 192 125 0 0 chr12 6252748 6252780 -137533675 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 577 251 29 0 chr12 6252817 6252992 -137533463 + MER104 DNA MER2_type 1 180 0 202 347 40 0 chr12 6253200 6253275 -137533180 + L2 LINE L2 3182 3259 -54 202 239 56 84 chr12 6253368 6253439 -137533016 + L3b LINE CR1 1506 1574 -9 2353 211 42 72 chr12 6253823 6254633 -137531822 + L1MC4 LINE L1 7221 8006 -36 2567 233 46 10 chr12 6256083 6256810 -137529645 - L1MEc LINE L1 -3312 2903 2184 341 269 92 8 chr12 6256835 6256965 -137529490 - L1MEc LINE L1 -6216 180 40 181 311 33 16 chr12 6256972 6257033 -137529422 + MER5A DNA MER1_type 128 189 0 870 266 125 37 chr12 6257266 6257675 -137528780 - L3 LINE CR1 -461 1116 672 275 316 0 0 chr12 6258012 6258091 -137528364 + MIR SINE MIR 58 136 -72 436 338 91 60 chr12 6258329 6258779 -137527676 + L2 LINE L2 2807 3270 -2 330 98 0 0 chr12 6259972 6260023 -137526432 + (CA)n Simple_repeat Simple_repeat 2 52 0 276 231 64 26 chr12 6260544 6260622 -137525833 - MIR3 SINE MIR -7 201 121 210 362 0 0 chr12 6260821 6260879 -137525576 + MIR3 SINE MIR 135 192 -16 341 306 244 10 chr12 6261057 6261250 -137525205 + MIR SINE MIR 3 240 -22 223 341 24 0 chr12 6261611 6261696 -137524759 + L2 LINE L2 2737 2823 -491 696 248 105 19 chr12 6261773 6261983 -137524472 + MIR SINE MIR 35 262 0 317 254 18 5 chr12 6262305 6262398 -137524057 + MLT1I LTR MaLR 72 203 -264 287 210 0 0 chr12 6262679 6262741 -137523714 - MER94 DNA DNA -60 74 13 395 253 0 0 chr12 6262760 6262835 -137523620 + L2 LINE L2 3179 3253 -19 2251 97 7 0 chr12 6262865 6263174 -137523281 - AluSx SINE Alu -1 311 1 500 232 101 7 chr12 6265932 6266070 -137520385 + MIR SINE MIR 32 182 -80 36 82 0 0 chr12 6266248 6266333 -137520122 + AT_rich Low_complexity Low_complexity 1 85 0 367 285 62 41 chr12 6266369 6266542 -137519913 - MIR SINE MIR -61 147 20 709 306 61 66 chr12 6267277 6267669 -137518786 + L3 LINE CR1 1123 1512 -65 182 280 67 73 chr12 6267850 6268000 -137518455 + MIR SINE MIR 4 152 -110 199 250 0 125 chr12 6268842 6268922 -137517533 + L2 LINE L2 3001 3070 -202 473 204 2 18 chr12 6270441 6270894 -137515561 + (CA)n Simple_repeat Simple_repeat 1 445 0 316 292 26 39 chr12 6272979 6273133 -137513322 - MIR3 SINE MIR -35 173 22 3035 247 123 25 chr12 6274184 6275508 -137510947 - L2 LINE L2 0 3313 1854 256 283 38 38 chr12 6277495 6277601 -137508854 + MIR SINE MIR 42 147 -61 289 295 66 25 chr12 6279940 6280062 -137506393 + MIR SINE MIR 20 146 -116 24 0 0 0 chr12 6281104 6281128 -137505327 + AT_rich Low_complexity Low_complexity 1 24 0 816 188 96 14 chr12 6282175 6282393 -137504062 + Charlie1 DNA MER1_type 1 236 -2525 585 220 38 8 chr12 6282380 6282512 -137503943 + Charlie1 DNA MER1_type 2621 2756 -5 * 559 226 8 0 chr12 6286371 6286618 -137499837 + G-rich Low_complexity Low_complexity 1 249 0 705 143 5 53 chr12 6286622 6286811 -137499644 + GA-rich Low_complexity Low_complexity 1 180 0 299 68 0 23 chr12 6286814 6286858 -137499597 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 219 246 0 0 chr12 6286864 6286921 -137499534 + A-rich Low_complexity Low_complexity 1 57 0 * 524 153 16 44 chr12 6286919 6287102 -137499353 + GA-rich Low_complexity Low_complexity 3 180 0 774 153 23 11 chr12 6287123 6287299 -137499156 + GA-rich Low_complexity Low_complexity 3 180 0 401 152 18 36 chr12 6287311 6287423 -137499032 + GA-rich Low_complexity Low_complexity 3 112 0 431 329 7 14 chr12 6287689 6287832 -137498623 - MER5A DNA MER1_type -13 176 35 213 292 34 11 chr12 6288014 6288103 -137498352 + MIR SINE MIR 48 138 -70 509 291 37 32 chr12 6288122 6288311 -137498144 - MIR3 SINE MIR 0 208 19 513 276 65 35 chr12 6288470 6288669 -137497786 + LTR33 LTR ERVL 314 518 -3 1040 255 77 20 chr12 6288703 6289056 -137497399 + L2 LINE L2 2941 3313 0 235 314 116 0 chr12 6289142 6289228 -137497227 + MIR SINE MIR 21 116 -92 313 250 170 0 chr12 6290896 6290996 -137495459 + MIR SINE MIR 34 150 -112 439 348 25 6 chr12 6291131 6291292 -137495163 + L2 LINE L2 3102 3265 -7 460 237 90 0 chr12 6291526 6291652 -137494803 - MIR SINE MIR -62 146 58 250 319 115 13 chr12 6292003 6292160 -137494295 - L2 LINE L2 -926 2388 2216 2702 70 123 5 chr12 6292403 6292763 -137493692 + MLT2A1 LTR ERVL 1 414 -30 478 53 13 13 chr12 6292763 6292838 -137493617 + (TA)n Simple_repeat Simple_repeat 2 76 0 2702 70 123 5 chr12 6292838 6292874 -137493581 + MLT2A1 LTR ERVL 414 444 0 4716 49 9 0 chr12 6292874 6293449 -137493006 + HERVL-A1 LTR ERVL 1 580 -5074 * 29763 63 9 5 chr12 6293441 6297082 -137489373 + HERVL-A1 LTR ERVL 765 4420 -1234 2163 80 27 23 chr12 6297082 6297382 -137489073 - THE1A LTR MaLR 0 355 55 1171 220 48 10 chr12 6347409 6347718 -137438737 + L1MC4a LINE L1 5639 5959 -1849 1776 166 31 3 chr12 6347767 6348057 -137438398 + AluJb SINE Alu 1 298 -14 2341 62 0 0 chr12 6348060 6348336 -137438119 + AluY SINE Alu 1 276 -35 4042 174 16 3 chr12 6348388 6349062 -137437393 - L1MB1 LINE L1 -6 6162 5475 342 0 0 0 chr12 6349062 6349100 -137437355 + (TG)n Simple_repeat Simple_repeat 2 39 0 4042 174 16 3 chr12 6349100 6349178 -137437277 - L1MB1 LINE L1 -693 5475 5400 306 265 191 37 chr12 6349876 6350065 -137436390 + MIR SINE MIR 31 248 -14 2100 107 0 0 chr12 6350216 6350487 -137435968 + AluSg SINE Alu 37 307 -3 402 290 66 48 chr12 6352145 6352257 -137434198 + L1ME2 LINE L1 5709 5818 -356 1919 167 0 0 chr12 6352257 6352562 -137433893 + AluJb SINE Alu 1 305 -7 402 290 66 48 chr12 6352562 6352673 -137433782 + L1ME2 LINE L1 5818 5940 -234 1195 191 36 13 chr12 6352682 6352985 -137433470 + L1MC3 LINE L1 7473 7782 -3 616 173 48 48 chr12 6353537 6353705 -137432750 - MER53 DNA DNA -19 170 3 489 283 40 80 chr12 6353742 6353821 -137432634 - MIR SINE MIR -44 218 137 2165 143 0 3 chr12 6353821 6354129 -137432326 - AluSx SINE Alu -3 309 3 489 283 40 80 chr12 6354129 6354275 -137432180 - MIR SINE MIR -125 137 2 238 266 31 16 chr12 6354618 6354682 -137431773 + L3b LINE CR1 1503 1567 -16 2326 100 0 3 chr12 6354701 6355000 -137431455 - AluSg SINE Alu -12 298 1 315 260 133 87 chr12 6355072 6355222 -137431233 - MIR SINE MIR -1 261 105 * 1011 271 89 39 chr12 6355221 6355682 -137430773 - L2 LINE L2 0 3313 2830 2518 68 0 0 chr12 6355961 6356257 -137430198 - AluY SINE Alu -14 297 2 654 152 0 0 chr12 6356291 6356416 -137430039 + (TGGA)n Simple_repeat Simple_repeat 1 125 0 2293 91 0 31 chr12 6356841 6357160 -137429295 + AluY SINE Alu 1 309 -2 207 329 7 20 chr12 6357852 6358004 -137428451 + (CA)n Simple_repeat Simple_repeat 1 150 0 1143 121 0 0 chr12 6359266 6359566 -137426889 + (CA)n Simple_repeat Simple_repeat 1 300 0 478 252 208 6 chr12 6360136 6360295 -137426160 + MIR SINE MIR 37 227 -35 2325 129 151 0 chr12 6360810 6361214 -137425241 + MER4C LTR ERV1 1 465 0 915 322 140 7 chr12 6362104 6362859 -137423596 + L2 LINE L2 2120 2975 -339 381 282 0 28 chr12 6364734 6364915 -137421540 + CT-rich Low_complexity Low_complexity 3 178 0 301 250 0 62 chr12 6364936 6365080 -137421375 + CT-rich Low_complexity Low_complexity 3 137 0 261 297 17 51 chr12 6365304 6365422 -137421033 - L2 LINE L2 -453 2861 2748 287 273 63 98 chr12 6365723 6366133 -137420322 + L2 LINE L2 2466 2861 -453 326 285 0 42 chr12 6366357 6366649 -137419806 + GA-rich Low_complexity Low_complexity 1 279 0 312 307 0 28 chr12 6366692 6366871 -137419584 + GA-rich Low_complexity Low_complexity 4 177 0 339 304 0 28 chr12 6366892 6367073 -137419382 + GA-rich Low_complexity Low_complexity 3 178 0 276 235 0 0 chr12 6367862 6367930 -137418525 + (TGGA)n Simple_repeat Simple_repeat 2 69 0 204 254 18 91 chr12 6368121 6368231 -137418224 + L2 LINE L2 2901 3002 -270 966 185 16 22 chr12 6368448 6368632 -137417823 - MIR SINE MIR 0 262 80 309 306 0 0 chr12 6369575 6369647 -137416808 + L2 LINE L2 3168 3239 -33 550 214 29 0 chr12 6370117 6370220 -137416235 - MER5B DNA MER1_type -1 177 72 181 200 29 0 chr12 6370216 6370251 -137416204 + MER5B DNA MER1_type 142 177 -1 * 1823 175 26 48 chr12 6370345 6370676 -137415779 - L1M LINE L1 -743 5403 5120 1408 212 38 46 chr12 6370676 6371044 -137415411 + MLT1A1 LTR MaLR 1 365 0 1823 175 26 48 chr12 6371044 6371246 -137415209 - L1M LINE L1 -1026 5120 4915 21 57 0 0 chr12 6371261 6371296 -137415159 + AT_rich Low_complexity Low_complexity 1 35 0 2633 172 13 2 chr12 6371342 6371909 -137414546 - L1M2 LINE L1 -559 5753 5174 380 364 59 62 chr12 6372184 6372827 -137413628 - L1MEc LINE L1 -5700 696 56 350 170 0 0 chr12 6372831 6372898 -137413557 - Alu SINE Alu -250 53 1 2362 110 0 13 chr12 6372914 6373222 -137413233 + AluSq SINE Alu 1 304 -9 25 0 0 0 chr12 6373285 6373310 -137413145 + AT_rich Low_complexity Low_complexity 1 25 0 2352 89 17 0 chr12 6373312 6373614 -137412841 + AluSc SINE Alu 1 307 -2 201 298 106 21 chr12 6373758 6373852 -137412603 - L2 LINE L2 -12 3260 3159 799 208 48 34 chr12 6374069 6374276 -137412179 - MLT1J2 LTR MaLR -240 210 1 375 23 0 0 chr12 6374441 6374485 -137411970 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 3890 179 34 1 chr12 6374934 6375665 -137410790 + L1MB7 LINE L1 5427 6181 -3 995 248 46 94 chr12 6375665 6376432 -137410023 + L1MDa LINE L1 1310 2039 -4501 21 0 0 0 chr12 6376700 6376721 -137409734 + AT_rich Low_complexity Low_complexity 1 21 0 517 269 82 39 chr12 6376957 6377165 -137409290 + L2 LINE L2 2842 3058 -255 5025 101 22 14 chr12 6377186 6377637 -137408818 + L1PB2 LINE L1 5337 5800 -351 363 73 0 0 chr12 6377637 6377692 -137408763 + (TG)n Simple_repeat Simple_repeat 2 56 0 5025 101 22 14 chr12 6377692 6378041 -137408414 + L1PB2 LINE L1 5800 6144 -7 183 42 0 0 chr12 6379347 6379371 -137407084 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr12 6379609 6379633 -137406822 + GC_rich Low_complexity Low_complexity 1 24 0 208 272 9 35 chr12 6379675 6379789 -137406666 + (CCCCG)n Simple_repeat Simple_repeat 5 115 0 540 309 99 4 chr12 6380719 6380952 -137405503 - MIR SINE MIR -6 256 2 527 224 40 59 chr12 6381917 6382069 -137404386 + MIR3 SINE MIR 36 184 -24 349 300 114 0 chr12 6382581 6382721 -137403734 - MIR SINE MIR -75 187 32 2450 84 0 0 chr12 6387324 6387620 -137398835 + AluSc SINE Alu 1 296 -13 944 302 102 26 chr12 6388206 6388666 -137397789 + L2 LINE L2 2255 2749 -565 761 366 36 5 chr12 6388694 6389115 -137397340 + L1ME LINE L1 32 465 -5605 631 293 37 73 chr12 6389332 6389597 -137396858 + L1ME LINE L1 525 706 -5364 3750 42 0 0 chr12 6389597 6390047 -137396408 - L1PA3 LINE L1 -3 6152 5703 631 293 37 73 chr12 6390047 6390381 -137396074 + L1ME LINE L1 706 1051 -5019 2779 123 136 6 chr12 6390386 6390892 -137395563 + Tigger3b DNA MER2_type 1 572 -659 924 138 12 31 chr12 6390893 6391053 -137395402 + FRAM SINE Alu 20 176 0 * 4032 118 39 8 chr12 6391038 6391685 -137394770 + Tigger3b DNA MER2_type 565 1231 0 1382 259 150 32 chr12 6391685 6392785 -137393670 + L1MC/D LINE L1 1247 2673 -3934 1770 181 0 7 chr12 6392792 6393091 -137393364 + AluJb SINE Alu 11 307 -5 3741 245 65 46 chr12 6393277 6393311 -137393144 + L1MC/D LINE L1 2641 2673 -3753 1885 161 30 3 chr12 6393311 6393610 -137392845 + AluJo SINE Alu 1 307 -5 3741 245 65 46 chr12 6393610 6394427 -137392028 + L1MC/D LINE L1 2673 3473 -2953 187 53 26 26 chr12 6394427 6394465 -137391990 + (TATAA)n Simple_repeat Simple_repeat 2 39 0 3741 245 65 46 chr12 6394465 6395227 -137391228 + L1MC/D LINE L1 3473 4286 -2140 3668 116 6 4 chr12 6395229 6395739 -137390716 + MER1A DNA MER1_type 19 529 0 4048 203 79 54 chr12 6395745 6396200 -137390255 + L1MC/D LINE L1 4296 4738 -1704 1209 206 66 71 chr12 6396200 6396565 -137389890 + MLT1A1 LTR MaLR 1 363 -2 4048 203 79 54 chr12 6396565 6396913 -137389542 + L1MC/D LINE L1 4738 5076 -1366 2376 86 0 26 chr12 6396913 6397226 -137389229 - AluSc SINE Alu -4 305 1 4048 203 79 54 chr12 6397226 6397915 -137388540 + L1MC/D LINE L1 5076 5821 -621 518 158 0 11 chr12 6398041 6398136 -137388319 - AluJ/FRAM SINE Alu 0 312 219 2316 70 0 33 chr12 6398303 6398597 -137387858 + AluY SINE Alu 1 285 -22 666 37 0 0 chr12 6398597 6398678 -137387777 + (CATA)n Simple_repeat Simple_repeat 2 82 0 215 61 30 0 chr12 6400647 6400680 -137385775 + (CA)n Simple_repeat Simple_repeat 2 35 0 302 262 12 0 chr12 6401401 6401485 -137384970 + L1MC/D LINE L1 6003 6087 -2001 211 214 0 0 chr12 6401486 6401528 -137384927 + L2 LINE L2 3266 3307 -6 1889 125 4 0 chr12 6402891 6403147 -137383308 + AluSx SINE Alu 1 257 -55 210 71 0 0 chr12 6403189 6403217 -137383238 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 816 71 0 0 chr12 6410309 6410407 -137376048 + AluY SINE Alu 198 295 -16 244 343 29 19 chr12 6410675 6410780 -137375675 - L2 LINE L2 -5 3308 3203 245 317 8 42 chr12 6411343 6411463 -137374992 - L3 LINE CR1 -246 1331 1216 1428 272 67 58 chr12 6411515 6411966 -137374489 + L1MC5 LINE L1 5548 5993 -1992 1603 195 3 3 chr12 6411966 6412248 -137374207 + AluJb SINE Alu 1 282 -30 223 71 48 0 chr12 6412252 6412294 -137374161 + (TA)n Simple_repeat Simple_repeat 1 44 0 1428 272 67 58 chr12 6412294 6412645 -137373810 + L1MC5 LINE L1 5995 6341 -1644 1988 120 4 7 chr12 6412645 6412921 -137373534 - AluSx SINE Alu -16 296 22 1428 272 67 58 chr12 6412921 6413757 -137372698 + L1MC5 LINE L1 6341 7232 -753 2124 108 28 0 chr12 6413848 6414135 -137372320 + AluSc SINE Alu 1 295 -14 2484 73 0 19 chr12 6414138 6414455 -137372000 + AluY SINE Alu 1 311 0 680 135 0 8 chr12 6414472 6414598 -137371857 + (GGGA)n Simple_repeat Simple_repeat 2 126 0 529 286 38 19 chr12 6414681 6414891 -137371564 + L1MC5 LINE L1 7313 7526 -435 220 234 0 117 chr12 6415423 6415500 -137370955 + L2 LINE L2 3205 3272 0 189 107 0 0 chr12 6415500 6415528 -137370927 + (TGGA)n Simple_repeat Simple_repeat 2 29 0 747 174 0 0 chr12 6415573 6415688 -137370767 + FLAM_A SINE Alu 1 115 -18 274 304 52 37 chr12 6415737 6415872 -137370583 + L2 LINE L2 3177 3313 0 246 156 0 0 chr12 6416001 6416046 -137370409 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 746 95 17 34 chr12 6417727 6417906 -137368549 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 756 87 43 36 chr12 6417947 6418402 -137368053 + (TAGA)n Simple_repeat Simple_repeat 1 458 0 211 321 175 7 chr12 6418452 6418589 -137367866 + MIR SINE MIR 88 247 -15 264 277 0 0 chr12 6418591 6418656 -137367799 + MIR3 SINE MIR 133 197 -11 402 348 153 22 chr12 6418782 6419227 -137367228 - L3 LINE CR1 -835 742 240 192 286 66 11 chr12 6420472 6420563 -137365892 - MIR3 SINE MIR -32 176 81 316 182 27 0 chr12 6420612 6420690 -137365765 + MIR SINE MIR 104 183 -79 374 249 145 42 chr12 6421043 6421236 -137365219 - MIR SINE MIR -1 261 49 2156 136 3 3 chr12 6421273 6421581 -137364874 - AluSx SINE Alu -4 308 1 521 230 140 11 chr12 6421640 6421818 -137364637 - MIR SINE MIR -30 232 32 1531 229 46 15 chr12 6421959 6422352 -137364103 + L1ME1 LINE L1 5757 6161 -5 24 0 0 0 chr12 6423006 6423030 -137363425 + AT_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr12 6425221 6425246 -137361209 + (A)n Simple_repeat Simple_repeat 1 25 0 245 273 66 58 chr12 6425311 6425432 -137361023 + MIR SINE MIR 11 132 -130 417 39 0 0 chr12 6425504 6425555 -137360900 + (CA)n Simple_repeat Simple_repeat 1 51 0 499 269 90 0 chr12 6425555 6425700 -137360755 - MER103 DNA DNA -1 165 8 186 171 0 0 chr12 6425875 6425916 -137360539 + (TAA)n Simple_repeat Simple_repeat 3 43 0 1110 199 75 72 chr12 6426453 6426799 -137359656 + MLT1J LTR MaLR 4 350 -161 366 235 121 20 chr12 6427285 6427434 -137359021 - MIR3 SINE MIR -15 193 30 255 218 0 0 chr12 6427951 6428006 -137358449 + L1MC4 LINE L1 6648 6702 -1340 * 277 189 14 27 chr12 6427976 6428050 -137358405 - L1MC4 LINE L1 -1340 6702 6630 229 237 51 0 chr12 6428093 6428152 -137358303 - MIR SINE MIR -109 153 92 1437 64 16 0 chr12 6429318 6429505 -137356950 - MER30B DNA MER1_type 0 190 1 312 253 0 33 chr12 6430663 6430754 -137355701 - MIR3 SINE MIR -23 185 98 198 0 0 0 chr12 6431085 6431107 -137355348 + (A)n Simple_repeat Simple_repeat 1 22 0 363 325 52 19 chr12 6431787 6431999 -137354456 + MIR SINE MIR 30 248 -14 1984 68 0 0 chr12 6432551 6432785 -137353670 + AluY SINE Alu 1 234 -77 198 0 0 0 chr12 6432800 6432822 -137353633 + (A)n Simple_repeat Simple_repeat 1 22 0 252 0 0 0 chr12 6432822 6432850 -137353605 + (TA)n Simple_repeat Simple_repeat 2 29 0 2207 105 16 7 chr12 6433033 6433338 -137353117 - AluSg SINE Alu -2 308 1 357 24 0 0 chr12 6433779 6433821 -137352634 + (CA)n Simple_repeat Simple_repeat 2 43 0 970 300 98 42 chr12 6434252 6434845 -137351610 + HAL1b LINE L1 5 662 -686 2485 45 7 16 chr12 6434845 6435153 -137351302 + AluY SINE Alu 3 307 -4 970 300 98 42 chr12 6435153 6435420 -137351035 + HAL1b LINE L1 662 913 -435 23 68 0 0 chr12 6435544 6435588 -137350867 + AT_rich Low_complexity Low_complexity 1 44 0 1035 301 119 54 chr12 6435610 6436714 -137349741 + L1MC4a LINE L1 2139 3313 -2833 283 188 16 0 chr12 6436811 6436875 -137349580 + L1P LINE L1 3343 3407 -2739 413 295 14 58 chr12 6437003 6437210 -137349245 + L1MC4a LINE L1 3507 3704 -2442 607 110 0 0 chr12 6437226 6437308 -137349147 + L1M4c LINE L1 29 110 -6274 * 1046 159 10 0 chr12 6437307 6437502 -137348953 + L1M4c LINE L1 860 1056 -5328 * 2125 106 14 35 chr12 6437490 6437857 -137348598 + L1M4c LINE L1 1924 2282 -4102 1802 157 12 26 chr12 6437859 6438119 -137348336 + L1MB3 LINE L1 5842 6097 -86 2088 56 0 8 chr12 6438119 6438370 -137348085 - AluY SINE Alu 0 311 63 1802 157 12 26 chr12 6438370 6438453 -137348002 + L1MB3 LINE L1 6097 6180 -3 725 253 125 112 chr12 6438464 6438763 -137347692 + L1MC4a LINE L1 3692 3986 -2160 240 111 0 0 chr12 6438763 6438799 -137347656 + (TG)n Simple_repeat Simple_repeat 1 36 0 725 253 125 112 chr12 6438799 6439639 -137346816 + L1MC4a LINE L1 3986 4846 -1300 7773 220 38 33 chr12 6439801 6440819 -137345636 + L1MB1 LINE L1 2596 3608 -3957 2115 103 0 14 chr12 6440819 6441100 -137345355 + AluSc SINE Alu 1 277 -32 191 35 0 35 chr12 6441100 6441129 -137345326 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 7773 220 38 33 chr12 6441129 6443221 -137343234 + L1MB1 LINE L1 3607 5784 -1781 4986 160 19 17 chr12 6443203 6443752 -137342703 + L1MB1 LINE L1 6350 6896 -691 * 360 0 0 0 chr12 6443752 6443792 -137342663 + (CA)n Simple_repeat Simple_repeat 2 41 0 4986 160 19 17 chr12 6443792 6444466 -137341989 + L1MB1 LINE L1 6896 7581 -6 1684 220 58 76 chr12 6444471 6445061 -137341394 + L1MC4a LINE L1 5310 5888 -1920 180 0 0 0 chr12 6447010 6447030 -137339425 + (TG)n Simple_repeat Simple_repeat 2 21 0 2605 57 0 0 chr12 6447031 6447327 -137339128 - AluY SINE Alu -15 296 1 1833 270 144 11 chr12 6448110 6449154 -137337301 - L2 LINE L2 -5 3308 2128 242 254 34 0 chr12 6449164 6449223 -137337232 - MIR SINE MIR -63 145 85 240 376 120 0 chr12 6449487 6449612 -137336843 - L2 LINE L2 0 3272 3133 186 43 0 0 chr12 6449617 6449640 -137336815 + (CAATA)n Simple_repeat Simple_repeat 2 24 0 447 253 96 7 chr12 6450683 6450829 -137335626 - MIR3 SINE MIR -23 185 27 487 239 32 134 chr12 6451950 6452197 -137334258 - MIR SINE MIR -14 248 27 202 256 110 12 chr12 6452527 6452609 -137333846 - MIR SINE MIR -73 135 46 182 224 0 20 chr12 6452973 6453022 -137333433 - L2 LINE L2 -467 2847 2800 259 254 16 0 chr12 6454733 6454796 -137331659 - L2 LINE L2 0 3272 3209 219 148 0 49 chr12 6456051 6456112 -137330343 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 481 200 9 9 chr12 6456671 6456781 -137329674 - MER3 DNA MER1_type 0 209 100 918 150 0 0 chr12 6457415 6457548 -137328907 - FLAM_C SINE Alu -10 133 1 2317 117 3 0 chr12 6459068 6459376 -137327079 + AluSx SINE Alu 1 309 -3 228 273 162 0 chr12 6460578 6460677 -137325778 - MIR SINE MIR -117 145 31 1480 156 19 0 chr12 6460982 6461239 -137325216 + L1MA5 LINE L1 6037 6298 -2 270 298 163 51 chr12 6461260 6461438 -137325017 + L3 LINE CR1 1190 1387 -190 * 467 260 72 20 chr12 6461432 6461744 -137324711 + L2 LINE L2 2758 3082 -231 1441 183 83 40 chr12 6461792 6462164 -137324291 + MLT1D LTR MaLR 118 505 0 339 25 0 0 chr12 6462170 6462210 -137324245 + (CA)n Simple_repeat Simple_repeat 2 41 0 391 200 62 0 chr12 6462226 6462306 -137324149 + L2 LINE L2 3229 3313 0 6421 70 10 6 chr12 6462710 6463604 -137322851 + L1P LINE L1 1611 2508 -3638 429 308 77 18 chr12 6464843 6465012 -137321443 + MER5A DNA MER1_type 10 188 -1 2106 128 0 10 chr12 6465072 6465368 -137321087 + AluSx SINE Alu 1 293 -19 947 61 0 0 chr12 6466567 6466682 -137319773 + AluSc SINE Alu 194 308 -1 2566 59 3 0 chr12 6466684 6466991 -137319464 + AluY SINE Alu 1 308 -3 236 271 102 0 chr12 6466991 6467050 -137319405 + MIR SINE MIR 51 115 -147 615 231 0 0 chr12 6467050 6467357 -137319098 + (CA)n Simple_repeat Simple_repeat 1 307 0 293 182 18 0 chr12 6467361 6467416 -137319039 + (CATA)n Simple_repeat Simple_repeat 1 56 0 529 275 48 16 chr12 6468561 6468750 -137317705 + MER91A DNA MER1_type 1 195 -1 1656 100 6 108 chr12 6470117 6470505 -137315950 + Tigger4(Zombi) DNA MER2_type 1 2731 0 238 190 66 66 chr12 6470547 6470630 -137315825 - MIR SINE MIR -60 148 69 724 250 185 29 chr12 6471087 6471607 -137314848 + L1ME4a LINE L1 5519 6119 -2 236 267 124 19 chr12 6474299 6474460 -137311995 + MIR3 SINE MIR 24 201 -7 263 253 58 35 chr12 6474593 6474680 -137311775 - MIR3 SINE MIR -15 193 105 348 274 66 23 chr12 6474867 6475002 -137311453 - MIR SINE MIR -67 141 3 485 188 80 212 chr12 6475279 6475474 -137310981 + MER5C DNA MER1_type 1 220 -104 2251 114 0 16 chr12 6475474 6475782 -137310673 + AluSx SINE Alu 1 303 -9 2488 55 3 0 chr12 6475782 6476073 -137310382 - AluY SINE Alu -19 292 1 485 188 80 212 chr12 6476073 6476201 -137310254 + MER5C DNA MER1_type 218 282 -42 251 300 175 8 chr12 6478060 6478180 -137308275 - MIR3 SINE MIR -8 200 61 301 288 55 113 chr12 6479242 6479516 -137306939 + L2 LINE L2 3042 3299 -14 2335 87 14 3 chr12 6480267 6480556 -137305899 + AluSx SINE Alu 1 292 -20 1595 293 101 20 chr12 6481159 6481964 -137304491 + L2 LINE L2 1765 2634 -680 254 340 141 14 chr12 6482013 6482483 -137303972 - L1ME3A LINE L1 -233 5929 5397 2265 109 0 0 chr12 6482489 6482792 -137303663 - AluSc SINE Alu -6 303 1 2374 98 0 0 chr12 6482794 6483089 -137303366 - AluSx SINE Alu -17 295 1 285 244 122 41 chr12 6483918 6484041 -137302414 + MIR SINE MIR 50 182 -80 316 342 153 30 chr12 6484141 6484816 -137301639 + L2 LINE L2 2004 2761 -553 2350 81 17 0 chr12 6485004 6485299 -137301156 + AluSq SINE Alu 1 300 -13 720 243 47 27 chr12 6485300 6485596 -137300859 + L1MC5 LINE L1 7616 7917 -44 2287 82 58 0 chr12 6485606 6485900 -137300555 - AluY SINE Alu 0 311 1 255 330 139 9 chr12 6485920 6485956 -137300499 + L2 LINE L2 3140 3170 -102 1532 188 11 18 chr12 6485956 6486238 -137300217 - AluJo SINE Alu -32 280 1 255 330 139 9 chr12 6486238 6486316 -137300139 + L2 LINE L2 3170 3269 -3 519 311 60 0 chr12 6486688 6486839 -137299616 + MIR3 SINE MIR 35 194 -14 586 148 20 0 chr12 6487206 6487307 -137299148 - L1MD1 LINE L1 0 6242 6140 275 318 19 28 chr12 6487659 6487766 -137298689 - MIR SINE MIR -152 110 5 524 224 239 40 chr12 6487919 6488120 -137298335 + MIR SINE MIR 3 243 -19 274 376 55 0 chr12 6488872 6488981 -137297474 - L2 LINE L2 -9 3263 3149 287 261 133 33 chr12 6489327 6489507 -137296948 - L3b LINE CR1 -100 1483 1286 260 276 0 120 chr12 6489664 6489821 -137296634 - MIR SINE MIR -77 131 22 369 0 0 0 chr12 6490088 6490129 -137296326 + (CA)n Simple_repeat Simple_repeat 2 42 0 856 153 0 0 chr12 6490129 6490247 -137296208 - FRAM SINE Alu -36 140 23 186 305 34 0 chr12 6490393 6490452 -137296003 + L2 LINE L2 3004 3064 -208 1261 154 45 12 chr12 6491642 6491811 -137294644 - AluJo SINE Alu -12 300 119 423 0 0 0 chr12 6491811 6491858 -137294597 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1261 154 45 12 chr12 6491858 6491934 -137294521 - AluJo SINE Alu -193 119 47 383 219 142 52 chr12 6492613 6492768 -137293687 - MIR3 SINE MIR -31 177 9 180 283 0 0 chr12 6493238 6493291 -137293164 - MIR SINE MIR -127 81 29 900 231 52 45 chr12 6493506 6493753 -137292702 + L2 LINE L2 3022 3273 -40 2075 149 70 6 chr12 6493753 6494096 -137292359 - MLT1A1 LTR MaLR 0 365 1 900 231 52 45 chr12 6494096 6494138 -137292317 + L2 LINE L2 3273 3313 0 2197 121 0 0 chr12 6495249 6495556 -137290899 + AluSx SINE Alu 1 307 -5 392 313 45 39 chr12 6495601 6495780 -137290675 + MIR3 SINE MIR 20 199 -9 2685 182 27 16 chr12 6496018 6496534 -137289921 + Charlie1b DNA MER1_type 1 522 -1 238 282 0 42 chr12 6496681 6496752 -137289703 + MIR SINE MIR 109 176 -86 227 33 0 0 chr12 6498861 6498891 -137287564 - MER91B DNA MER1_type -126 64 35 301 263 237 13 chr12 6499771 6499927 -137286528 - MIR3 SINE MIR -3 205 15 2306 82 0 7 chr12 6502181 6502486 -137283969 + AluSx SINE Alu 1 303 -9 1741 133 13 66 chr12 6502802 6503119 -137283336 - AluSx SINE Alu -12 300 1 1789 155 16 10 chr12 6503131 6503163 -137283292 - AluJb SINE Alu 0 312 282 372 43 0 0 chr12 6503163 6503209 -137283246 + (TG)n Simple_repeat Simple_repeat 1 46 0 1789 155 16 10 chr12 6503209 6503485 -137282970 - AluJb SINE Alu -30 282 2 508 247 126 37 chr12 6503488 6503678 -137282777 - MIR SINE MIR -38 224 18 619 256 150 6 chr12 6504783 6504963 -137281492 + MIR SINE MIR 35 240 -22 2197 108 0 0 chr12 6507201 6507497 -137278958 - AluSx SINE Alu -16 296 1 207 0 0 0 chr12 6508818 6508841 -137277614 + (A)n Simple_repeat Simple_repeat 1 23 0 278 239 86 69 chr12 6510326 6510452 -137276003 - MER5B DNA MER1_type -40 138 18 532 239 52 7 chr12 6510653 6510808 -137275647 + MER104 DNA Tc2 1 162 -18 1854 131 0 18 chr12 6511372 6511654 -137274801 + AluSx SINE Alu 15 291 -21 269 258 0 15 chr12 6511844 6511910 -137274545 + MIR SINE MIR 46 110 -152 210 37 0 0 chr12 6512371 6512398 -137274057 + (CAT)n Simple_repeat Simple_repeat 2 28 0 2321 70 0 13 chr12 6513655 6513956 -137272499 + AluY SINE Alu 1 297 -14 2247 98 0 0 chr12 6514950 6515245 -137271210 + AluSx SINE Alu 1 295 -17 2151 109 0 0 chr12 6515247 6515550 -137270905 + AluSc SINE Alu 1 303 -6 377 366 143 8 chr12 6515556 6516026 -137270429 + L1ME3 LINE L1 5397 5929 -233 1520 297 99 19 chr12 6516075 6516880 -137269575 - L2 LINE L2 -680 2634 1765 2202 89 14 3 chr12 6517481 6517772 -137268683 - AluSx SINE Alu -18 294 1 307 297 65 91 chr12 6518523 6518755 -137267700 - L2 LINE L2 -14 3299 3074 241 300 175 8 chr12 6519859 6519979 -137266476 + MIR3 SINE MIR 61 200 -8 457 194 80 209 chr12 6521838 6521966 -137264489 - MER5C DNA MER1_type -41 283 140 2364 55 3 0 chr12 6521966 6522257 -137264198 + AluY SINE Alu 1 292 -19 2130 114 0 16 chr12 6522257 6522565 -137263890 - AluSx SINE Alu -9 303 1 457 194 80 209 chr12 6522565 6522760 -137263695 - MER5C DNA MER1_type -182 142 1 320 292 57 16 chr12 6523037 6523172 -137263283 + MIR SINE MIR 3 141 -67 248 253 58 35 chr12 6523359 6523446 -137263009 + MIR3 SINE MIR 105 193 -15 217 292 130 25 chr12 6523579 6523740 -137262715 - MIR3 SINE MIR -7 201 24 775 258 181 25 chr12 6526432 6526952 -137259503 - L1ME4a LINE L1 -2 6119 5519 239 221 19 19 chr12 6527409 6527492 -137258963 + MIR SINE MIR 69 150 -60 1638 100 6 108 chr12 6527534 6527922 -137258533 - Tigger4(Zombi) DNA MER2_type 0 2731 1 526 275 48 16 chr12 6529289 6529478 -137256977 - MER91A DNA MER1_type -1 195 1 293 182 18 0 chr12 6530623 6530678 -137255777 + (TATG)n Simple_repeat Simple_repeat 1 56 0 615 231 0 0 chr12 6530682 6530989 -137255466 + (TG)n Simple_repeat Simple_repeat 1 307 0 218 271 102 0 chr12 6530989 6531048 -137255407 - MIR SINE MIR -147 115 51 2442 59 3 0 chr12 6531048 6531355 -137255100 - AluY SINE Alu -3 308 1 903 61 0 0 chr12 6531357 6531472 -137254983 - AluSc SINE Alu -1 308 194 1981 128 0 10 chr12 6532671 6532967 -137253488 - AluSx SINE Alu -19 293 1 403 308 77 18 chr12 6533027 6533196 -137253259 - MER5A DNA MER1_type -1 188 10 6369 70 10 6 chr12 6534435 6535329 -137251126 - L1P LINE L1 -3638 2508 1611 366 200 62 0 chr12 6535733 6535813 -137250642 - L2 LINE L2 0 3313 3229 339 25 0 0 chr12 6535829 6535869 -137250586 + (TG)n Simple_repeat Simple_repeat 2 41 0 1491 183 83 40 chr12 6535875 6536247 -137250208 - MLT1D LTR MaLR 0 505 118 445 273 67 16 chr12 6536295 6536607 -137249848 - L2 LINE L2 -231 3082 2758 241 310 95 57 chr12 6536621 6536779 -137249676 - L3 LINE CR1 -224 1353 1190 1555 159 19 0 chr12 6536800 6537057 -137249398 - L1MA5 LINE L1 -2 6298 6037 219 293 151 0 chr12 6537362 6537468 -137248987 + MIR SINE MIR 31 152 -110 2195 117 3 0 chr12 6538663 6538971 -137247484 - AluSx SINE Alu -3 309 1 918 150 0 0 chr12 6540491 6540624 -137245831 + FLAM_C SINE Alu 1 133 -10 481 200 9 9 chr12 6541258 6541368 -137245087 + MER3 DNA MER1_type 100 209 0 219 148 0 49 chr12 6541927 6541988 -137244467 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 259 254 16 0 chr12 6543243 6543306 -137243149 + L2 LINE L2 3209 3272 0 182 224 0 20 chr12 6545017 6545066 -137241389 + L2 LINE L2 2800 2847 -467 202 256 110 12 chr12 6545430 6545512 -137240943 + MIR SINE MIR 46 135 -73 487 239 32 134 chr12 6545842 6546089 -137240366 + MIR SINE MIR 27 248 -14 447 253 96 7 chr12 6547210 6547356 -137239099 + MIR3 SINE MIR 27 185 -23 186 43 0 0 chr12 6548399 6548422 -137238033 + (TATTG)n Simple_repeat Simple_repeat 2 24 0 240 376 120 0 chr12 6548427 6548552 -137237903 + L2 LINE L2 3133 3272 0 242 254 34 0 chr12 6548816 6548875 -137237580 + MIR SINE MIR 85 145 -63 1833 270 144 11 chr12 6548885 6549929 -137236526 + L2 LINE L2 2128 3308 -5 2615 57 0 0 chr12 6550712 6551009 -137235446 + AluY SINE Alu 1 297 -14 180 0 0 0 chr12 6551010 6551030 -137235425 + (CA)n Simple_repeat Simple_repeat 2 21 0 1684 220 58 76 chr12 6552979 6553569 -137232886 - L1MC4a LINE L1 -1920 5888 5310 4986 160 19 17 chr12 6553574 6554248 -137232207 - L1MB1 LINE L1 -6 6162 5477 360 0 0 0 chr12 6554248 6554288 -137232167 + (TG)n Simple_repeat Simple_repeat 2 41 0 4986 160 19 17 chr12 6554288 6554837 -137231618 - L1MB1 LINE L1 -691 5477 4931 456 132 53 99 chr12 6554819 6554971 -137231484 - L1MB1 LINE L1 -1781 4365 4221 * 225 291 46 80 chr12 6555775 6555799 -137230656 - MIR3 SINE MIR -62 146 123 1942 64 4 32 chr12 6555799 6556050 -137230405 + AluSp SINE Alu 44 287 -26 225 291 46 80 chr12 6556050 6556176 -137230279 - MIR3 SINE MIR -85 123 1 2358 98 7 0 chr12 6556599 6556906 -137229549 - AluSx SINE Alu 0 312 4 575 251 117 6 chr12 6557455 6557618 -137228837 + MER5A DNA MER1_type 9 189 0 2365 80 13 13 chr12 6557786 6558085 -137228370 + AluSx SINE Alu 1 299 -13 633 155 0 0 chr12 6558426 6558529 -137227926 + MER31B LTR ERV1 1 103 -363 2234 88 64 10 chr12 6558529 6558825 -137227630 - AluSx SINE Alu 0 312 1 187 385 13 0 chr12 6558826 6558904 -137227551 + MIR SINE MIR 63 141 -67 629 275 75 33 chr12 6559797 6559871 -137226584 - L1ME4a LINE L1 0 6121 6052 2347 113 0 0 chr12 6559871 6560181 -137226274 + AluSx SINE Alu 1 310 -2 629 275 75 33 chr12 6560181 6560531 -137225924 - L1ME4a LINE L1 -69 6052 5679 389 350 89 17 chr12 6560908 6561088 -137225367 + MIR3 SINE MIR 16 208 0 334 348 58 22 chr12 6561869 6562007 -137224448 + L2 LINE L2 3122 3264 -8 369 0 0 0 chr12 6563523 6563564 -137222891 + (CA)n Simple_repeat Simple_repeat 2 42 0 2468 50 0 0 chr12 6563936 6564244 -137222211 + AluY SINE Alu 1 308 0 554 330 68 16 chr12 6564280 6564647 -137221808 + L1ME3A LINE L1 27 412 -5707 2291 118 0 3 chr12 6564715 6565021 -137221434 - AluSg SINE Alu -5 305 1 252 232 185 40 chr12 6565047 6565198 -137221257 + L1ME3A LINE L1 665 837 -5282 889 165 0 0 chr12 6565207 6565334 -137221121 + FLAM_C SINE Alu 1 127 -16 1896 104 8 0 chr12 6565366 6565616 -137220839 + AluSc SINE Alu 51 302 -7 1709 172 20 30 chr12 6565645 6565948 -137220507 + AluJo SINE Alu 1 300 -12 232 248 109 10 chr12 6566016 6566074 -137220381 + L1ME3A LINE L1 1005 1056 -5063 2159 149 0 0 chr12 6566074 6566383 -137220072 + AluSx SINE Alu 1 309 -3 232 248 109 10 chr12 6566383 6566425 -137220030 + L1ME3A LINE L1 1056 1115 -5004 1011 250 69 12 chr12 6566474 6566794 -137219661 - LTR16C LTR ERVL 0 491 154 189 0 0 0 chr12 6566923 6566944 -137219511 + (T)n Simple_repeat Simple_repeat 1 21 0 1905 147 13 33 chr12 6567022 6567328 -137219127 - AluJb SINE Alu -12 300 1 345 293 101 35 chr12 6567749 6568066 -137218389 + L1ME3A LINE L1 2125 2462 -3667 400 259 47 86 chr12 6568216 6568266 -137218189 + L1ME3A LINE L1 4014 4064 -2065 1523 78 5 15 chr12 6568266 6568471 -137217984 + AluSc SINE Alu 1 203 -106 400 259 47 86 chr12 6568471 6568485 -137217970 + L1ME3A LINE L1 4064 4077 -2052 2505 68 3 3 chr12 6568485 6568794 -137217661 - AluY SINE Alu -2 309 1 400 259 47 86 chr12 6568794 6568960 -137217495 + L1ME3A LINE L1 4077 4236 -1893 490 249 75 30 chr12 6569072 6569096 -137217359 + L1ME3A LINE L1 4391 4412 -1717 2129 114 47 3 chr12 6569096 6569395 -137217060 + AluSx SINE Alu 1 312 0 490 249 75 30 chr12 6569395 6569635 -137216820 + L1ME3A LINE L1 4412 4667 -1462 1246 54 0 7 chr12 6569636 6569785 -137216670 + AluY SINE Alu 154 301 -10 2209 90 7 0 chr12 6569808 6570098 -137216357 + AluSp SINE Alu 1 292 -21 2401 80 13 0 chr12 6570099 6570399 -137216056 + AluY SINE Alu 1 304 -7 1019 119 44 6 chr12 6570493 6570653 -137215802 + AluSq SINE Alu 1 166 -147 8030 124 127 32 chr12 6570653 6572202 -137214253 + pTR5 LTR ERV1 743 2438 0 817 149 0 35 chr12 6572207 6572348 -137214107 + AluSq SINE Alu 165 300 -13 550 281 93 24 chr12 6572351 6572852 -137213603 + L1ME3A LINE L1 5369 5939 -214 1803 178 0 13 chr12 6572890 6573188 -137213267 + AluJb SINE Alu 11 304 -8 313 266 53 35 chr12 6573343 6573456 -137212999 + L1MC4 LINE L1 7926 8040 -2 374 253 138 23 chr12 6573488 6573662 -137212793 - L1ME LINE L1 -395 5726 5533 2264 60 42 7 chr12 6573727 6574011 -137212444 + AluY SINE Alu 1 294 -17 232 292 101 0 chr12 6574012 6574180 -137212275 - L1P4 LINE L1 -727 5438 5254 2299 121 0 3 chr12 6574304 6574617 -137211838 - AluSx SINE Alu 0 312 1 186 310 0 17 chr12 6575213 6575271 -137211184 - L2 LINE L2 -18 3254 3198 1217 221 79 79 chr12 6575291 6575603 -137210852 - MLT1C LTR MaLR -6 461 150 2178 132 7 0 chr12 6575603 6575907 -137210548 - AluSx SINE Alu -6 306 1 1870 133 10 58 chr12 6575909 6576218 -137210237 - AluSx SINE Alu -18 294 1 1217 221 79 79 chr12 6576218 6576358 -137210097 - MLT1C LTR MaLR -317 150 6 544 284 59 6 chr12 6576363 6576532 -137209923 - MIR SINE MIR -80 182 5 2266 90 3 20 chr12 6576637 6576937 -137209518 - AluY SINE Alu -16 295 1 342 277 92 31 chr12 6576949 6577079 -137209376 + L2 LINE L2 3167 3304 -9 563 266 25 61 chr12 6577405 6577489 -137208966 - L1ME LINE L1 -309 5812 5727 2629 59 0 0 chr12 6577489 6577794 -137208661 - AluY SINE Alu -6 305 1 563 266 25 61 chr12 6577794 6577987 -137208468 - L1ME LINE L1 -394 5727 5545 2039 159 124 28 chr12 6578419 6578877 -137207578 + MLT1D LTR MaLR 4 505 0 310 246 94 0 chr12 6579680 6579825 -137206630 + L1M4 LINE L1 2425 2620 -3526 988 192 0 6 chr12 6579827 6579994 -137206461 + AluJo SINE Alu 83 248 -64 1076 206 38 8 chr12 6579994 6580232 -137206223 - MER66B LTR ERV1 -7 479 235 3668 165 116 30 chr12 6580233 6581618 -137204837 + pTR5 LTR ERV1 741 2606 0 753 130 17 197 chr12 6581623 6581770 -137204685 - MER66A LTR ERV1 -256 222 133 2027 134 0 0 chr12 6581770 6582047 -137204408 - AluSx SINE Alu -35 277 1 753 130 17 197 chr12 6582047 6582138 -137204317 - MER66A LTR ERV1 -345 133 27 353 153 0 0 chr12 6582145 6582204 -137204251 + AluJo SINE Alu 238 296 -6 2130 112 0 30 chr12 6582210 6582515 -137203940 + AluSx SINE Alu 6 301 -11 277 234 26 0 chr12 6582530 6582607 -137203848 + L1MC/D LINE L1 5629 5707 -652 2062 66 96 0 chr12 6582608 6582880 -137203575 - AluY SINE Alu -13 298 1 1453 182 29 26 chr12 6582917 6583230 -137203225 + LOR1b LTR ERV1 70 383 -78 852 269 10 17 chr12 6583500 6583798 -137202657 + AluSx SINE Alu 17 312 0 232 292 101 0 chr12 6583921 6584089 -137202366 + L1P4 LINE L1 5254 5438 -727 1714 151 42 11 chr12 6584090 6584375 -137202080 - AluY SINE Alu -17 294 1 293 252 67 34 chr12 6584469 6584588 -137201867 + L1ME LINE L1 5577 5699 -422 1846 142 14 35 chr12 6584958 6585247 -137201208 - AluJb SINE Alu -29 283 1 420 279 114 67 chr12 6585690 6586005 -137200450 + L1 LINE L1 2164 2493 -3653 281 256 67 0 chr12 6586081 6586171 -137200284 - MLT1J LTR MaLR -60 451 356 227 235 0 44 chr12 6586574 6586642 -137199813 + L1MEd LINE L1 330 394 -5725 2231 87 11 0 chr12 6586654 6586940 -137199515 + AluY SINE Alu 1 289 -22 35 27 0 0 chr12 6587127 6587164 -137199291 + GC_rich Low_complexity Low_complexity 1 37 0 272 134 34 34 chr12 6587220 6587339 -137199116 + (TTG)n Simple_repeat Simple_repeat 2 120 0 1442 142 0 0 chr12 6587494 6587699 -137198756 + AluSq SINE Alu 107 311 -2 311 218 0 0 chr12 6587700 6587755 -137198700 - L1MC4 LINE L1 -221 7821 7767 2577 59 0 0 chr12 6587755 6588058 -137198397 + AluY SINE Alu 1 303 -8 760 138 144 28 chr12 6588059 6588240 -137198215 + L1MD1 LINE L1 5828 6029 -213 318 231 13 0 chr12 6588240 6588318 -137198137 + LOR1a LTR ERV1 1 79 -418 2555 45 3 3 chr12 6588330 6588638 -137197817 - AluY SINE Alu -3 308 1 1590 164 23 26 chr12 6588675 6588985 -137197470 + LOR1b LTR ERV1 70 378 -83 2034 125 7 0 chr12 6588985 6589272 -137197183 + AluSx SINE Alu 1 289 -23 672 294 33 82 chr12 6589474 6589926 -137196529 - L2 LINE L2 -32 3240 2811 3086 129 66 15 chr12 6590077 6590276 -137196179 + MER41C LTR ERV1 1 188 -366 2325 104 3 0 chr12 6590276 6590573 -137195882 - AluSg SINE Alu -12 298 1 3086 129 66 15 chr12 6590573 6590900 -137195555 + MER41C LTR ERV1 188 554 0 189 295 53 11 chr12 6590985 6591080 -137195375 - MIR3 SINE MIR -102 106 8 2354 102 3 0 chr12 6591895 6592200 -137194255 + AluSx SINE Alu 1 306 -6 2532 68 0 10 chr12 6592320 6592629 -137193826 - AluY SINE Alu -5 306 1 433 272 76 48 chr12 6592712 6592962 -137193493 + Charlie8 DNA MER1_type 215 471 -1946 685 243 88 23 chr12 6592974 6593348 -137193107 - MLT1F LTR MaLR -106 436 1 691 285 50 68 chr12 6593409 6593827 -137192628 + L1M4 LINE L1 2320 2744 -3402 2326 62 0 4 chr12 6593827 6594102 -137192353 + AluY SINE Alu 1 274 -37 261 75 0 0 chr12 6594106 6594146 -137192309 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 691 285 50 68 chr12 6594146 6594340 -137192115 + L1M4 LINE L1 2747 2926 -3220 2558 59 0 0 chr12 6594471 6594760 -137191695 - AluY SINE Alu -20 291 3 2055 139 3 0 chr12 6594966 6595268 -137191187 - AluSg SINE Alu -7 303 1 598 271 65 13 chr12 6595404 6595559 -137190896 - MLT1J LTR MaLR -348 163 1 1705 287 80 33 chr12 6595590 6596121 -137190334 + L1M4 LINE L1 3644 4149 -1997 2279 60 57 7 chr12 6596121 6596402 -137190053 + AluY SINE Alu 1 295 -16 1705 287 80 33 chr12 6596402 6597086 -137189369 + L1M4 LINE L1 4149 4916 -1230 2252 90 4 0 chr12 6597378 6597656 -137188799 - AluSq SINE Alu -10 303 25 304 331 44 44 chr12 6597704 6597885 -137188570 + L1ME3A LINE L1 5963 6143 -27 2483 67 0 7 chr12 6598455 6598755 -137187700 + AluSc SINE Alu 1 298 -11 2339 79 10 10 chr12 6599139 6599444 -137187011 - AluSq SINE Alu -8 305 1 1676 171 7 7 chr12 6599740 6600021 -137186434 - AluJb SINE Alu -30 282 2 457 332 46 37 chr12 6600039 6600280 -137186175 + L1ME4a LINE L1 5775 6017 -104 359 266 141 8 chr12 6600283 6600411 -137186044 - MER5A DNA MER1_type -3 186 42 1722 212 37 8 chr12 6600411 6600812 -137185643 - MER63B DNA MER1_type -23 413 1 1299 189 14 21 chr12 6600881 6601172 -137185283 - L1MA5 LINE L1 0 6300 6012 476 277 104 42 chr12 6602068 6602357 -137184098 - L2 LINE L2 -7 3306 3000 5798 141 240 20 chr12 6602357 6603738 -137182717 + pTR5 LTR ERV1 753 2438 0 1071 254 56 25 chr12 6603765 6604229 -137182226 - L2 LINE L2 -350 2964 2437 811 237 102 102 chr12 6604666 6605087 -137181368 - MLT1J LTR MaLR -60 451 28 1750 174 7 13 chr12 6605087 6605386 -137181069 + AluJb SINE Alu 1 297 -15 811 237 102 102 chr12 6605386 6605415 -137181040 - MLT1J LTR MaLR -482 29 1 889 66 22 22 chr12 6605499 6605635 -137180820 - MER85 DNA T2_type -3 136 1 416 317 84 6 chr12 6605693 6605860 -137180595 - MIR SINE MIR -67 195 16 2450 84 0 0 chr12 6606193 6606492 -137179963 - AluY SINE Alu -12 299 1 220 310 17 0 chr12 6606867 6606925 -137179530 - MIR3 SINE MIR -1 207 149 524 229 95 50 chr12 6607022 6607201 -137179254 + MIR SINE MIR 13 199 -63 824 153 24 0 chr12 6607201 6607325 -137179130 + FLAM_C SINE Alu 1 127 -16 34 0 0 0 chr12 6607325 6607359 -137179096 + AT_rich Low_complexity Low_complexity 1 34 0 1862 117 4 0 chr12 6607359 6607615 -137178840 + AluY SINE Alu 37 293 -18 2339 92 7 3 chr12 6607617 6607923 -137178532 + AluSc SINE Alu 1 307 -2 1645 109 143 4 chr12 6607962 6608259 -137178196 - AluSq SINE Alu 0 334 1 3112 204 21 20 chr12 6608263 6608863 -137177592 + MER82 DNA MER2_type 1 604 -49 2475 81 0 7 chr12 6608863 6609173 -137177282 - AluY SINE Alu -3 308 1 3112 204 21 20 chr12 6609173 6609224 -137177231 + MER82 DNA MER2_type 604 653 0 217 269 0 0 chr12 6609225 6609277 -137177178 + MIR SINE MIR 198 249 -13 413 288 61 8 chr12 6609289 6609421 -137177034 - MIR SINE MIR -76 186 48 2533 81 0 3 chr12 6609614 6609924 -137176531 + AluY SINE Alu 1 309 -2 491 241 118 15 chr12 6610468 6610663 -137175792 + MER58C DNA MER1_type 1 215 0 202 348 36 18 chr12 6610703 6610815 -137175640 + MIR SINE MIR 34 147 -61 184 261 130 78 chr12 6610989 6611104 -137175351 - MIR SINE MIR -114 148 28 2281 96 3 0 chr12 6611250 6611532 -137174923 - AluSq SINE Alu -30 283 1 2435 94 7 0 chr12 6612638 6612947 -137173508 - AluSx SINE Alu -1 311 1 2468 153 84 6 chr12 6612985 6613484 -137172971 + L1MC3 LINE L1 6137 6260 -84 383 180 100 31 chr12 6613480 6613505 -137172950 + L1MC3 LINE L1 7677 7699 -86 * 2277 104 7 10 chr12 6613505 6613812 -137172643 + AluSx SINE Alu 1 306 -6 383 180 100 31 chr12 6613812 6613918 -137172537 + L1MC3 LINE L1 7699 7785 0 230 196 11 120 chr12 6613992 6614024 -137172431 + MIR SINE MIR 2 36 -226 2662 40 0 3 chr12 6614024 6614324 -137172131 + AluY SINE Alu 1 299 -12 230 196 11 120 chr12 6614324 6614383 -137172072 + MIR SINE MIR 36 83 -179 360 316 9 9 chr12 6615162 6615276 -137171179 + MIR SINE MIR 24 137 -71 296 258 34 11 chr12 6615556 6615645 -137170810 - MIR SINE MIR -84 124 34 1908 110 69 39 chr12 6615968 6616332 -137170123 + THE1C LTR MaLR 1 375 0 467 220 0 23 chr12 6617308 6617440 -137169015 + L1MC4a LINE L1 4926 5054 -1092 25 51 0 0 chr12 6617517 6617556 -137168899 + AT_rich Low_complexity Low_complexity 1 39 0 1248 248 177 18 chr12 6617636 6617671 -137168784 + L1MC4a LINE L1 5258 5286 -2522 2225 128 3 0 chr12 6617671 6617968 -137168487 + AluSx SINE Alu 1 298 -14 1248 248 177 18 chr12 6617968 6618087 -137168368 + L1MC4a LINE L1 5286 5385 -2423 2211 100 0 32 chr12 6618087 6618397 -137168058 + AluY SINE Alu 1 300 -11 1248 248 177 18 chr12 6618397 6618847 -137167608 + L1MC4a LINE L1 5385 5959 -1849 2276 73 0 4 chr12 6618848 6619122 -137167333 + AluY SINE Alu 1 273 -38 379 75 0 0 chr12 6619122 6619175 -137167280 + Alu SINE Alu 242 294 -7 1792 164 13 41 chr12 6619393 6619534 -137166921 + AluJb SINE Alu 1 144 -168 2489 46 0 36 chr12 6619534 6619837 -137166618 + AluY SINE Alu 1 292 -19 1792 164 13 41 chr12 6619837 6620013 -137166442 + AluJb SINE Alu 144 309 -3 1083 76 15 0 chr12 6620607 6620738 -137165717 - AluSq/x SINE Alu -179 133 1 329 305 178 9 chr12 6620950 6621163 -137165292 - LTR33 LTR ERVL -115 406 158 404 299 57 86 chr12 6621421 6621806 -137164649 + L2 LINE L2 2899 3272 0 934 212 92 39 chr12 6622574 6622857 -137163598 - MLT1C LTR MaLR 0 467 170 1038 194 70 0 chr12 6622860 6623102 -137163353 - L1MB3 LINE L1 -65 6118 5860 817 209 5 31 chr12 6623110 6623301 -137163154 - MLT1C LTR MaLR -273 194 9 378 323 99 10 chr12 6623737 6624130 -137162325 - L2 LINE L2 -6 3307 2880 751 170 0 9 chr12 6624133 6624600 -137161855 + (TG)n Simple_repeat Simple_repeat 1 462 0 2332 104 7 0 chr12 6625879 6626188 -137160267 + AluSq SINE Alu 1 311 -2 398 265 197 0 chr12 6626266 6626413 -137160042 + L3 LINE CR1 1263 1438 -139 890 237 47 5 chr12 6626884 6627099 -137159356 - MIR SINE MIR -14 248 25 2032 184 78 23 chr12 6627172 6627644 -137158811 - MLT1D LTR MaLR -7 498 1 1507 130 113 45 chr12 6627662 6627954 -137158501 + AluSx SINE Alu 1 312 0 1031 230 41 70 chr12 6628159 6628375 -137158080 - L1MC5 LINE L1 -55 7906 7706 2687 42 0 3 chr12 6628375 6628685 -137157770 + AluY SINE Alu 1 309 -2 1031 230 41 70 chr12 6628685 6628881 -137157574 - L1MC5 LINE L1 -255 7706 7506 22 35 0 0 chr12 6628956 6628985 -137157470 + AT_rich Low_complexity Low_complexity 1 29 0 217 360 13 0 chr12 6629407 6629482 -137156973 + MIR SINE MIR 32 107 -101 1237 179 112 13 chr12 6629762 6629839 -137156616 + L1MD3 LINE L1 7653 7721 -274 2172 116 10 7 chr12 6629839 6630149 -137156306 + AluSx SINE Alu 1 311 -1 1237 179 112 13 chr12 6630149 6630383 -137156072 + L1MD3 LINE L1 7721 7995 0 450 149 0 0 chr12 6630392 6630459 -137155996 + AluSg/x SINE Alu 205 271 -29 348 149 11 35 chr12 6630462 6630549 -137155906 + GA-rich Low_complexity Low_complexity 3 87 0 2014 163 0 0 chr12 6630594 6630894 -137155561 + AluJb SINE Alu 1 300 -12 201 214 89 0 chr12 6631628 6631684 -137154771 + L2 LINE L2 3203 3263 -9 292 308 57 58 chr12 6631864 6632074 -137154381 - MIR SINE MIR -50 212 3 519 249 194 15 chr12 6632546 6632747 -137153708 + MIR SINE MIR 23 259 -3 952 160 0 0 chr12 6632822 6632966 -137153489 - AluSg/x SINE Alu -20 290 147 645 106 53 9 chr12 6632966 6633079 -137153376 - LTR5 LTR ERVK 0 969 852 4658 124 187 73 chr12 6633082 6634487 -137151968 - pTR5 LTR ERV1 0 2438 742 6396 62 82 1 chr12 6634487 6635277 -137151178 - LTR5 LTR ERVK -115 854 1 1209 102 13 0 chr12 6635300 6635457 -137150998 - AluSc SINE Alu -20 289 131 2629 53 0 0 chr12 6635458 6635759 -137150696 - AluY SINE Alu -10 301 1 481 193 119 51 chr12 6636134 6636310 -137150145 - L2 LINE L2 -1 3312 3125 1358 175 144 12 chr12 6637311 6637693 -137148762 - MLT1D LTR MaLR -8 497 15 1967 117 3 73 chr12 6637705 6637857 -137148598 + AluSx SINE Alu 1 121 -191 2378 88 0 0 chr12 6637857 6638142 -137148313 + AluSg SINE Alu 8 292 -18 1071 163 30 15 chr12 6638103 6638305 -137148150 + AluSg/x SINE Alu 88 292 -18 1967 117 3 73 chr12 6638142 6638305 -137148150 + AluSx SINE Alu 121 294 -18 242 335 102 28 chr12 6638451 6638705 -137147750 - L2 LINE L2 -6 3266 2994 365 271 90 36 chr12 6639177 6639223 -137147232 - MIR3 SINE MIR -12 196 154 2414 123 121 139 chr12 6639223 6639739 -137146716 - MER4A LTR ERV1 0 664 140 2343 60 0 3 chr12 6639739 6640039 -137146416 - AluY SINE Alu -8 303 5 2414 123 121 139 chr12 6640039 6640056 -137146399 - MER4A LTR ERV1 -524 140 124 2278 84 0 0 chr12 6640056 6640355 -137146100 - AluSc SINE Alu -10 299 1 2414 123 121 139 chr12 6640355 6640496 -137145959 - MER4A LTR ERV1 -540 124 1 365 271 90 36 chr12 6640496 6640615 -137145840 - MIR3 SINE MIR -54 154 22 220 336 37 0 chr12 6640715 6640822 -137145633 - MIR SINE MIR -3 259 149 206 275 108 62 chr12 6641111 6641369 -137145086 + L2 LINE L2 2844 3113 -159 268 294 123 12 chr12 6641649 6641812 -137144643 + L2 LINE L2 2626 2806 -508 310 293 106 8 chr12 6642173 6642296 -137144159 + L1ME4a LINE L1 5982 6116 -5 208 95 12 83 chr12 6643282 6643366 -137143089 + (CGGGGG)n Simple_repeat Simple_repeat 4 81 0 1696 162 17 7 chr12 6644807 6645109 -137141346 + AluJb SINE Alu 1 305 -7 353 318 101 14 chr12 6645824 6645972 -137140483 - MIR3 SINE MIR -28 180 20 301 309 0 40 chr12 6646183 6646309 -137140146 - MIR SINE MIR -112 150 30 664 244 44 11 chr12 6647086 6647266 -137139189 + MIR3 SINE MIR 12 197 -11 543 166 131 9 chr12 6647334 6647453 -137139002 + L1PB4 LINE L1 6034 6165 -1 222 311 113 9 chr12 6647668 6647774 -137138681 + MIR SINE MIR 113 229 -33 181 28 0 83 chr12 6648648 6648684 -137137771 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1722 153 10 32 chr12 6649261 6649574 -137136881 - AluJb SINE Alu -6 306 1 1481 167 85 4 chr12 6649951 6650232 -137136223 - AluJo SINE Alu -8 304 1 2310 97 3 0 chr12 6650993 6651301 -137135154 + AluSp SINE Alu 1 309 -4 2080 97 28 0 chr12 6651609 6651897 -137134558 - AluSp SINE Alu 0 313 18 2114 99 31 0 chr12 6652018 6652310 -137134145 - AluSx SINE Alu -11 301 1 2328 100 0 0 chr12 6652726 6653035 -137133420 - AluSx SINE Alu -3 309 1 619 296 38 46 chr12 6653782 6653886 -137132569 + MIR SINE MIR 1 104 -158 2190 87 3 3 chr12 6653886 6654186 -137132269 - AluSg SINE Alu -10 300 1 619 296 38 46 chr12 6654186 6654321 -137132134 + MIR SINE MIR 104 238 -24 312 268 18 45 chr12 6655254 6655366 -137131089 + MIR3 SINE MIR 63 171 -37 377 326 21 0 chr12 6656055 6656199 -137130256 + MIR SINE MIR 95 241 -21 200 176 0 0 chr12 6656208 6656242 -137130213 + (CTG)n Simple_repeat Simple_repeat 1 34 0 330 265 68 38 chr12 6657119 6657251 -137129204 + MIR SINE MIR 20 155 -107 1678 133 14 14 chr12 6657393 6657672 -137128783 - AluJb SINE Alu -4 308 30 592 217 97 23 chr12 6658413 6658588 -137127867 - MER5A DNA MER1_type -1 188 1 387 330 5 60 chr12 6659990 6660175 -137126280 - MIR SINE MIR -41 221 47 1700 157 7 30 chr12 6660291 6660590 -137125865 + AluJb SINE Alu 1 292 -20 1979 135 0 10 chr12 6660993 6661290 -137125165 + AluJb SINE Alu 1 294 -18 2318 94 0 0 chr12 6662048 6662356 -137124099 - AluSx SINE Alu -4 308 1 2397 77 0 0 chr12 6662525 6662835 -137123620 - AluY SINE Alu -1 310 1 1783 191 28 8 chr12 6663770 6664162 -137122293 - L1MD3 LINE L1 -8 7987 7588 1770 128 0 64 chr12 6664744 6665056 -137121399 + AluJo SINE Alu 1 292 -20 2413 60 0 0 chr12 6666312 6666611 -137119844 - AluY SINE Alu -12 299 1 438 245 63 14 chr12 6668100 6668243 -137118212 - L1ME3A LINE L1 -241 5929 5780 2277 93 3 0 chr12 6670236 6670548 -137115907 - AluSp SINE Alu 0 313 1 483 306 87 15 chr12 6670555 6670751 -137115704 - MIR SINE MIR -7 255 46 233 94 0 0 chr12 6671318 6671350 -137115105 - Alu SINE Alu -227 75 44 1923 103 0 25 chr12 6671350 6671632 -137114823 + AluSx SINE Alu 31 305 -7 198 226 19 0 chr12 6672391 6672444 -137114011 + MIR SINE MIR 78 131 -77 587 211 16 16 chr12 6674326 6674454 -137112001 - MIR SINE MIR -59 203 76 533 259 8 15 chr12 6674924 6675055 -137111400 - MIR SINE MIR -58 150 21 718 120 19 0 chr12 6677398 6677506 -137108949 - HY1 scRNA scRNA -2 110 1 326 257 154 22 chr12 6677758 6677894 -137108561 - MIR SINE MIR -26 236 83 261 364 148 0 chr12 6679369 6679578 -137106877 - MIR SINE MIR -11 251 12 2242 95 16 3 chr12 6680019 6680325 -137106130 - AluSq SINE Alu -3 310 1 408 155 95 0 chr12 6680366 6680450 -137106005 + AluSg/x SINE Alu 205 296 -13 221 21 42 42 chr12 6680933 6680981 -137105474 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2386 67 3 0 chr12 6681396 6681693 -137104762 - AluSp SINE Alu -15 298 1 264 362 17 17 chr12 6681734 6681850 -137104605 - MIR SINE MIR -62 146 31 241 171 162 124 chr12 6681892 6681997 -137104458 + L2 LINE L2 3205 3313 0 519 249 0 34 chr12 6682006 6682192 -137104263 - MLT2F LTR ERVL 0 663 436 1869 136 3 10 chr12 6682217 6682518 -137103937 - AluJb SINE Alu -13 299 1 733 176 11 13 chr12 6682541 6682724 -137103731 - MLT2F LTR ERVL -434 229 2 2124 161 67 38 chr12 6682958 6683384 -137103071 + L1MB4 LINE L1 5689 6132 -48 1627 191 20 0 chr12 6683384 6683678 -137102777 + AluJb SINE Alu 1 300 -12 2124 161 67 38 chr12 6683678 6683729 -137102726 + L1MB4 LINE L1 6132 6180 0 2119 111 3 0 chr12 6683840 6684146 -137102309 - AluSx SINE Alu -5 307 1 407 329 114 57 chr12 6685313 6685504 -137100951 + L3 LINE CR1 455 634 -943 2206 89 0 13 chr12 6685504 6685808 -137100647 + AluSx SINE Alu 1 300 -12 2082 108 7 3 chr12 6685810 6686107 -137100348 + AluSc SINE Alu 1 298 -11 407 329 114 57 chr12 6686107 6686262 -137100193 + L3 LINE CR1 634 824 -753 329 228 80 124 chr12 6686438 6686541 -137099914 - MLT1J LTR MaLR -174 337 231 2191 103 0 3 chr12 6686541 6686842 -137099613 + AluY SINE Alu 1 300 -11 329 228 80 124 chr12 6686842 6686988 -137099467 - MLT1J LTR MaLR -280 231 99 184 304 45 45 chr12 6687050 6687162 -137099293 - MIR SINE MIR -65 143 32 736 325 166 28 chr12 6687206 6687850 -137098605 + L3 LINE CR1 793 1525 -52 3675 93 0 6 chr12 6688482 6688996 -137097459 - MER9 LTR ERVK 0 511 1 2323 104 3 0 chr12 6689078 6689376 -137097079 - AluSp SINE Alu -14 299 1 2513 67 0 0 chr12 6689378 6689677 -137096778 - AluY SINE Alu -7 304 6 2292 112 0 3 chr12 6690206 6690510 -137095945 - AluSx SINE Alu -7 305 3 187 118 59 0 chr12 6690895 6690929 -137095526 + MIR SINE MIR 117 152 -110 2361 118 0 0 chr12 6690944 6691250 -137095205 + AluY SINE Alu 1 306 -5 242 162 0 0 chr12 6691566 6691603 -137094852 + Alu SINE Alu 2 38 -263 2075 129 23 13 chr12 6691603 6691912 -137094543 - AluSx SINE Alu 0 312 1 645 256 97 13 chr12 6692668 6692966 -137093489 - LTR50 LTR ERVL 0 678 296 2223 122 0 0 chr12 6694105 6694399 -137092056 - AluSx SINE Alu -18 294 1 2571 73 0 0 chr12 6694853 6695156 -137091299 - AluY SINE Alu -8 303 1 1929 120 7 37 chr12 6695327 6695626 -137090829 - AluJb SINE Alu -22 290 1 1195 149 0 0 chr12 6695827 6696008 -137090447 + AluSg/x SINE Alu 128 308 -2 346 269 57 46 chr12 6696017 6696192 -137090263 - MLT1L LTR MaLR -365 250 74 438 228 0 20 chr12 6696327 6696428 -137090027 - L2 LINE L2 -2644 670 572 1945 130 56 11 chr12 6696676 6696961 -137089494 + AluSg SINE Alu 1 298 -12 384 228 99 0 chr12 6697129 6697230 -137089225 + MIR SINE MIR 35 145 -117 2287 101 13 0 chr12 6697234 6697541 -137088914 + AluSq SINE Alu 1 311 -2 465 253 95 13 chr12 6697827 6697985 -137088470 + L2 LINE L2 576 746 -2568 230 188 203 14 chr12 6698004 6698073 -137088382 + MER112 DNA MER1_type 5 86 -174 2349 112 0 3 chr12 6698085 6698397 -137088058 + AluY SINE Alu 1 311 0 547 267 158 0 chr12 6698404 6698488 -137087967 + MER112 DNA MER1_type 64 133 -127 201 74 0 0 chr12 6698488 6698515 -137087940 + (CTATT)n Simple_repeat Simple_repeat 4 30 0 547 267 158 0 chr12 6698515 6698595 -137087860 + MER112 DNA MER1_type 133 254 -6 400 186 0 0 chr12 6698682 6698752 -137087703 + FLAM_A SINE Alu 16 85 -57 228 246 0 0 chr12 6698790 6698847 -137087608 - L2 LINE L2 -1215 2099 2043 368 241 183 16 chr12 6698849 6699040 -137087415 + L2 LINE L2 834 1056 -2258 2303 95 0 0 chr12 6699040 6699369 -137087086 + AluSq SINE Alu 1 329 0 418 224 39 83 chr12 6699376 6699401 -137087054 - L2 LINE L2 -1 3312 3287 2315 106 0 7 chr12 6699401 6699704 -137086751 + AluSx SINE Alu 1 301 -11 418 224 39 83 chr12 6699704 6699834 -137086621 - L2 LINE L2 -26 3287 3164 2517 90 3 0 chr12 6699835 6700147 -137086308 + AluSp SINE Alu 1 313 0 14039 114 36 36 chr12 6700184 6702547 -137083908 - Tigger1 DNA MER2_type 0 2418 52 2460 67 0 17 chr12 6702547 6702847 -137083608 + AluY SINE Alu 2 296 -15 14039 114 36 36 chr12 6702847 6702897 -137083558 - Tigger1 DNA MER2_type -2366 52 4 339 242 20 0 chr12 6702901 6703000 -137083455 - L2 LINE L2 -363 2950 2850 2058 148 7 0 chr12 6703001 6703305 -137083150 + AluJb SINE Alu 1 306 -6 207 0 0 0 chr12 6703306 6703329 -137083126 + (CA)n Simple_repeat Simple_repeat 2 24 0 327 238 0 0 chr12 6703334 6703397 -137083058 + L1MC4 LINE L1 6640 6702 -1340 1712 253 165 39 chr12 6703399 6703712 -137082743 - L2 LINE L2 -453 2861 2589 2506 54 3 3 chr12 6703712 6704009 -137082446 - AluY SINE Alu -14 297 1 1712 253 165 39 chr12 6704009 6704533 -137081922 - L2 LINE L2 -725 2589 1919 2379 95 0 0 chr12 6704534 6704829 -137081626 - AluSq SINE Alu -6 307 13 1270 84 0 0 chr12 6704842 6704996 -137081459 - AluSq SINE Alu -8 305 152 200 239 155 0 chr12 6706320 6706391 -137080064 + MIR SINE MIR 107 188 -74 1315 175 69 95 chr12 6706404 6706509 -137079946 + MLT2D LTR ERVL 3 109 -305 2241 97 26 26 chr12 6706509 6706820 -137079635 + AluSx SINE Alu 1 311 -1 1315 175 69 95 chr12 6706820 6707137 -137079318 + MLT2D LTR ERVL 109 414 0 195 344 33 0 chr12 6707525 6707615 -137078840 - MIR3 SINE MIR -29 179 87 184 388 30 8 chr12 6707654 6707788 -137078667 - MIR SINE MIR -55 153 17 240 233 0 0 chr12 6708137 6708180 -137078275 - L2 LINE L2 -259 3054 3012 338 213 33 57 chr12 6708245 6708367 -137078088 + MIR SINE MIR 25 143 -119 862 142 0 0 chr12 6708378 6708505 -137077950 + FLAM_C SINE Alu 15 141 -2 396 194 83 9 chr12 6708511 6708619 -137077836 + MIR SINE MIR 137 252 -10 2426 90 0 7 chr12 6708641 6708942 -137077513 + AluSg1 SINE Alu 1 299 -10 276 30 0 0 chr12 6708942 6708975 -137077480 + (TA)n Simple_repeat Simple_repeat 2 34 0 2156 141 3 0 chr12 6708981 6709279 -137077176 + AluSq SINE Alu 1 299 -14 1975 149 0 7 chr12 6709296 6709598 -137076857 + AluSx SINE Alu 1 300 -12 276 170 0 0 chr12 6710057 6710110 -137076345 + (CA)n Simple_repeat Simple_repeat 1 53 0 306 327 6 12 chr12 6710254 6710419 -137076036 + L1MC4a LINE L1 5872 6035 -1773 2307 111 0 7 chr12 6710789 6711095 -137075360 + AluSq SINE Alu 1 304 -9 823 164 57 0 chr12 6711102 6711242 -137075213 + FRAM SINE Alu 11 158 -18 54 29 0 0 chr12 6711283 6711351 -137075104 + AT_rich Low_complexity Low_complexity 1 68 0 216 0 0 0 chr12 6712131 6712155 -137074300 + (A)n Simple_repeat Simple_repeat 1 24 0 546 290 68 27 chr12 6712175 6712396 -137074059 + MIR SINE MIR 21 250 -12 2502 71 0 10 chr12 6712425 6712733 -137073722 - AluY SINE Alu -6 305 1 359 283 106 33 chr12 6712798 6712978 -137073477 - MLT1K LTR MaLR 0 588 396 204 186 0 0 chr12 6713017 6713076 -137073379 + T-rich Low_complexity Low_complexity 1 59 0 240 111 0 0 chr12 6713491 6713527 -137072928 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 304 39 0 0 chr12 6713528 6713579 -137072876 + AluSp/q SINE Alu 253 303 0 652 277 64 84 chr12 6713595 6713899 -137072556 - MLT1E LTR MaLR -149 444 135 2372 61 4 0 chr12 6713899 6714209 -137072246 - AluY SINE Alu 0 311 1 1818 175 3 3 chr12 6714211 6714496 -137071959 - AluJb SINE Alu -17 295 11 652 277 64 84 chr12 6714496 6714627 -137071828 - MLT1E LTR MaLR -459 134 14 803 219 112 85 chr12 6714627 6714717 -137071738 - L2 LINE L2 -520 2794 2708 2375 98 0 0 chr12 6714717 6715012 -137071443 - AluSc SINE Alu -14 295 1 803 219 112 85 chr12 6715012 6715038 -137071417 - L2 LINE L2 -606 2708 2684 2034 103 0 35 chr12 6715038 6715353 -137071102 + AluY SINE Alu 1 305 0 803 219 112 85 chr12 6715353 6715600 -137070855 - L2 LINE L2 -630 2684 2419 251 307 168 0 chr12 6715747 6715848 -137070607 - L2 LINE L2 -5 3267 3150 1354 154 82 82 chr12 6716115 6716290 -137070165 - AluJo SINE Alu -20 292 115 315 0 0 0 chr12 6716290 6716325 -137070130 + (TG)n Simple_repeat Simple_repeat 2 36 0 1354 154 82 82 chr12 6716325 6716441 -137070014 - AluJo SINE Alu -196 116 1 1054 237 101 29 chr12 6716468 6716953 -137069502 - LTR33 LTR ERVL -1 520 1 326 276 168 0 chr12 6718389 6718531 -137067924 - MIR SINE MIR -55 207 33 2017 112 0 58 chr12 6718592 6718905 -137067550 + AluSx SINE Alu 1 295 -17 419 261 62 15 chr12 6719459 6719589 -137066866 + MER5B DNA MER1_type 43 178 0 2328 95 0 3 chr12 6719743 6720039 -137066416 + AluSg SINE Alu 1 295 -15 696 267 23 28 chr12 6720321 6720538 -137065917 + MIR SINE MIR 22 237 -25 244 229 0 0 chr12 6720552 6720613 -137065842 + (TA)n Simple_repeat Simple_repeat 1 61 0 521 178 19 9 chr12 6720699 6720806 -137065649 - FLAM_A SINE Alu -15 127 20 1517 166 104 6 chr12 6720818 6721156 -137065299 - Tigger2a DNA MER2_type -63 371 1 284 246 0 0 chr12 6721169 6721226 -137065229 - MIR SINE MIR -9 253 197 22 35 0 0 chr12 6721800 6721829 -137064626 + GC_rich Low_complexity Low_complexity 1 29 0 1648 165 3 14 chr12 6722086 6722383 -137064072 - AluJb SINE Alu -15 297 4 223 323 152 0 chr12 6723108 6723207 -137063248 - MIR SINE MIR -69 193 80 259 205 128 0 chr12 6723414 6723492 -137062963 + L2 LINE L2 3225 3312 -1 185 176 0 0 chr12 6723665 6723699 -137062756 - L3b LINE CR1 -196 1387 1354 * 447 304 213 41 chr12 6723676 6724762 -137061693 + L2 LINE L2 397 1295 -2019 2131 125 13 0 chr12 6724762 6725065 -137061390 + AluSx SINE Alu 1 307 -5 447 304 213 41 chr12 6725065 6725621 -137060834 + L2 LINE L2 1295 2321 -993 22 56 0 0 chr12 6725794 6725830 -137060625 + AT_rich Low_complexity Low_complexity 1 36 0 2339 143 70 64 chr12 6725830 6725921 -137060534 + L1MB2 LINE L1 5652 5741 -430 1881 125 0 45 chr12 6725921 6726208 -137060247 + AluJo SINE Alu 5 278 -34 233 0 62 0 chr12 6726213 6726245 -137060210 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2339 143 70 64 chr12 6726245 6726613 -137059842 + L1MB2 LINE L1 5744 6123 -48 2395 90 10 0 chr12 6726613 6726914 -137059541 + AluSp SINE Alu 1 304 -9 2339 143 70 64 chr12 6726914 6726964 -137059491 + L1MB2 LINE L1 6123 6171 0 660 132 61 0 chr12 6727002 6727116 -137059339 - AluSx SINE Alu -11 299 179 843 85 9 0 chr12 6727116 6727222 -137059233 - AluSx SINE Alu -206 107 1 228 333 31 0 chr12 6727223 6727319 -137059136 + L2 LINE L2 2725 2823 -491 224 341 41 0 chr12 6727541 6727664 -137058791 + L2 LINE L2 3142 3269 -3 434 311 106 6 chr12 6727697 6727858 -137058597 + MIR SINE MIR 36 212 -50 2030 152 10 0 chr12 6728671 6728973 -137057482 - AluJo SINE Alu -7 305 1 2328 58 44 31 chr12 6729693 6729987 -137056468 - AluSg SINE Alu -11 299 2 2438 65 0 29 chr12 6730263 6730572 -137055883 + AluY SINE Alu 1 300 -11 1513 198 88 0 chr12 6730586 6730859 -137055596 + AluJb SINE Alu 1 297 -15 1302 166 60 19 chr12 6730859 6731124 -137055331 - L1MB7 LINE L1 -171 6013 5738 990 137 0 0 chr12 6731135 6731274 -137055181 - AluJb SINE Alu -15 297 159 2614 171 37 27 chr12 6731275 6731569 -137054886 - L1M4 LINE L1 -394 5784 5495 2206 79 0 41 chr12 6731569 6731886 -137054569 - AluY SINE Alu -4 307 4 2614 171 37 27 chr12 6731886 6732104 -137054351 - L1M4 LINE L1 -683 5495 5281 2272 95 24 0 chr12 6732104 6732226 -137054229 + AluSx SINE Alu 1 119 -193 192 77 0 0 chr12 6732226 6732252 -137054203 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2272 95 24 0 chr12 6732252 6732423 -137054032 + AluSx SINE Alu 119 301 -11 2614 171 37 27 chr12 6732423 6732645 -137053810 - L1M4 LINE L1 -897 5281 5050 1175 147 73 10 chr12 6732652 6732856 -137053599 - AluJb SINE Alu -9 303 87 1007 203 66 4 chr12 6732859 6733100 -137053355 - L1M4 LINE L1 -1092 5054 4799 2122 191 32 92 chr12 6734695 6735079 -137051376 - L1M4 LINE L1 -1332 4814 4486 2536 80 0 0 chr12 6735079 6735390 -137051065 + AluY SINE Alu 1 311 0 2122 191 32 92 chr12 6735390 6735681 -137050774 - L1M4 LINE L1 -1660 4486 4179 242 141 51 77 chr12 6735944 6736022 -137050433 + L1MB4 LINE L1 6105 6180 0 872 191 0 13 chr12 6736333 6736485 -137049970 - AluJb SINE Alu -22 290 141 2048 152 0 0 chr12 6736496 6736785 -137049670 - AluSx SINE Alu -14 298 10 2329 97 13 7 chr12 6736913 6737212 -137049243 + AluSx SINE Alu 1 301 -11 1000 151 25 0 chr12 6737063 6737222 -137049233 + AluSg/x SINE Alu 147 309 -1 705 106 0 0 chr12 6737233 6737337 -137049118 + (GGAA)n Simple_repeat Simple_repeat 4 107 0 215 122 0 24 chr12 6737380 6737421 -137049034 + (GAAA)n Simple_repeat Simple_repeat 3 42 0 797 148 7 22 chr12 6737431 6737566 -137048889 + FLAM_C SINE Alu 1 133 0 282 287 107 24 chr12 6737578 6737761 -137048694 + MIR SINE MIR 19 212 -50 244 314 48 37 chr12 6738585 6738773 -137047682 + L2 LINE L2 2864 3053 -219 230 287 149 17 chr12 6738776 6738805 -137047650 - MLT1J LTR MaLR -24 487 463 2070 108 0 0 chr12 6738805 6739082 -137047373 + AluSx SINE Alu 1 277 -35 230 287 149 17 chr12 6739082 6739226 -137047229 - MLT1J LTR MaLR -48 463 291 1014 209 49 85 chr12 6739380 6739622 -137046833 + MER97a DNA MER1_type? 12 261 -633 2235 95 0 0 chr12 6739622 6739929 -137046526 + AluSx SINE Alu 1 307 0 1014 209 49 85 chr12 6739929 6739983 -137046472 + MER97a DNA MER1_type? 261 315 -579 2501 46 13 0 chr12 6739983 6740289 -137046166 + AluY SINE Alu 1 310 -1 1014 209 49 85 chr12 6740289 6740378 -137046077 + MER97a DNA MER1_type? 315 385 -509 2503 180 8 95 chr12 6740414 6740485 -137045970 + MER41D LTR ERV1 1 77 -480 813 153 15 0 chr12 6740485 6740616 -137045839 - FLAM_C SINE Alu 0 133 1 2503 180 8 95 chr12 6740616 6741154 -137045301 + MER41D LTR ERV1 77 557 0 482 199 67 107 chr12 6741163 6741303 -137045152 + MER97c DNA MER1_type? 468 612 -441 1628 118 0 0 chr12 6741303 6741531 -137044924 + AluSx SINE Alu 1 228 -84 482 199 67 107 chr12 6741531 6741682 -137044773 + MER97c DNA MER1_type? 612 1024 -29 372 181 14 0 chr12 6741682 6741754 -137044701 + AluS SINE Alu 1 73 -230 2159 70 46 0 chr12 6741930 6742215 -137044240 + L1PB1 LINE L1 5851 6148 -3 425 267 222 22 chr12 6742233 6742593 -137043862 + Charlie2b DNA MER1_type 312 743 -2039 971 229 84 74 chr12 6742647 6742683 -137043772 + Charlie2b DNA MER1_type 833 867 -1915 2129 98 3 7 chr12 6742683 6742979 -137043476 + AluSg SINE Alu 1 295 -15 971 229 84 74 chr12 6742979 6743144 -137043311 + Charlie2b DNA MER1_type 867 1029 -1753 1906 122 17 7 chr12 6743144 6743440 -137043015 - AluJb SINE Alu -8 304 6 971 229 84 74 chr12 6743440 6743643 -137042812 + Charlie2b DNA MER1_type 1029 1242 -1540 687 241 89 21 chr12 6743732 6743923 -137042532 - MIR SINE MIR -25 237 34 1414 153 0 5 chr12 6744069 6744284 -137042171 + AluJb SINE Alu 85 298 -14 189 0 0 0 chr12 6744285 6744306 -137042149 + (TA)n Simple_repeat Simple_repeat 1 21 0 273 282 89 0 chr12 6744343 6744467 -137041988 + L1MC4 LINE L1 7908 8042 0 2033 117 3 3 chr12 6744633 6744923 -137041532 - AluSx SINE Alu -13 299 10 705 251 16 16 chr12 6745134 6745325 -137041130 - LTR16A LTR ERVL -174 276 86 300 161 0 161 chr12 6745340 6745382 -137041073 - MIR SINE MIR -115 147 126 2046 151 0 0 chr12 6745382 6745694 -137040761 + AluSx SINE Alu 1 312 0 300 161 0 161 chr12 6745694 6745744 -137040711 - MIR SINE MIR -136 126 70 858 261 129 21 chr12 6745769 6746156 -137040299 - MLT1H LTR MaLR -13 536 33 2231 102 0 13 chr12 6746668 6746983 -137039472 - AluY SINE Alu 0 311 1 705 287 61 4 chr12 6747594 6747824 -137038631 + MIR SINE MIR 5 247 -15 1713 156 7 7 chr12 6747833 6748121 -137038334 + AluJo SINE Alu 1 288 -24 198 0 0 0 chr12 6748121 6748143 -137038312 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2316 87 0 10 chr12 6748457 6748768 -137037687 + AluSc SINE Alu 1 308 -1 296 292 21 0 chr12 6748800 6748896 -137037559 + L2 LINE L2 2962 3059 -213 1011 157 0 0 chr12 6749015 6749174 -137037281 + AluJb SINE Alu 140 298 -14 320 267 103 0 chr12 6749415 6749531 -137036924 - MER117 DNA MER1_type -39 158 31 182 335 112 20 chr12 6749963 6750115 -137036340 - L2 LINE L2 -190 3082 2917 575 281 58 54 chr12 6750313 6750626 -137035829 + L2 LINE L2 2914 3227 -45 504 0 0 0 chr12 6751828 6751884 -137034571 + (CA)n Simple_repeat Simple_repeat 1 56 0 468 192 0 0 chr12 6752553 6752631 -137033824 + FLAM SINE Alu 41 118 -25 30 27 0 0 chr12 6752636 6752673 -137033782 + AT_rich Low_complexity Low_complexity 1 37 0 2347 93 0 0 chr12 6752731 6753041 -137033414 - AluSg SINE Alu 0 310 1 22 35 0 0 chr12 6753436 6753465 -137032990 + GC_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr12 6753918 6753954 -137032501 + GC_rich Low_complexity Low_complexity 1 36 0 463 264 55 60 chr12 6754557 6754758 -137031697 - MER58 DNA MER1_type -2186 234 35 2309 88 0 13 chr12 6757271 6757578 -137028877 + AluSq SINE Alu 1 303 -10 189 178 0 0 chr12 6757940 6757985 -137028470 + (CA)n Simple_repeat Simple_repeat 2 46 0 663 226 43 33 chr12 6758304 6758515 -137027940 + MIR SINE MIR 3 217 -45 2145 113 14 0 chr12 6762224 6762517 -137023938 + AluSx SINE Alu 9 305 -7 512 357 57 37 chr12 6762761 6763317 -137023138 - L2 LINE L2 -2 3270 2712 1319 218 40 58 chr12 6763367 6763813 -137022642 - MLT1C LTR MaLR -29 438 1 1860 168 0 7 chr12 6764069 6764366 -137022089 - AluJo SINE Alu -11 301 7 2350 34 41 3 chr12 6764607 6764898 -137021557 + AluY SINE Alu 1 302 -9 491 284 0 15 chr12 6764946 6765086 -137021369 + MIR SINE MIR 36 171 -67 1825 163 0 7 chr12 6765647 6765954 -137020501 + AluJo SINE Alu 1 305 -7 209 317 0 0 chr12 6767282 6767364 -137019091 + C-rich Low_complexity Low_complexity 1 82 0 213 39 0 0 chr12 6768217 6768243 -137018212 + (CCCCCT)n Simple_repeat Simple_repeat 3 28 0 491 247 29 12 chr12 6768310 6768496 -137017959 + MIR SINE MIR 30 216 -46 552 241 36 100 chr12 6768928 6769075 -137017380 + MIR SINE MIR 55 185 -77 2160 117 0 0 chr12 6769075 6769383 -137017072 + AluSg SINE Alu 1 308 -2 552 241 36 100 chr12 6769383 6769455 -137017000 + MIR SINE MIR 185 260 -2 218 404 94 9 chr12 6770045 6770258 -137016197 - L2 LINE L2 -7 3265 3035 1325 132 147 16 chr12 6771423 6771681 -137014774 + AluJo SINE Alu 1 292 -10 226 0 29 29 chr12 6771986 6772021 -137014434 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr12 6772377 6772406 -137014049 + GC_rich Low_complexity Low_complexity 1 29 0 254 333 0 10 chr12 6772993 6773089 -137013366 + (CTGGGG)n Simple_repeat Simple_repeat 1 95 0 182 114 0 29 chr12 6773813 6773848 -137012607 + (TGGA)n Simple_repeat Simple_repeat 2 35 0 317 287 118 47 chr12 6774181 6774373 -137012082 + MIR SINE MIR 11 216 -46 195 327 39 29 chr12 6774393 6774497 -137011958 - MIR SINE MIR -103 159 55 2294 92 16 0 chr12 6774776 6775080 -137011375 + AluSg SINE Alu 1 309 -1 421 282 72 67 chr12 6775101 6775209 -137011246 - MIR SINE MIR -32 230 119 1985 129 23 13 chr12 6775209 6775518 -137010937 + AluJo SINE Alu 1 312 0 421 282 72 67 chr12 6775518 6775618 -137010837 - MIR SINE MIR -143 119 21 481 299 85 6 chr12 6775691 6775855 -137010600 - MER104 DNA MER2_type 0 180 4 189 299 22 103 chr12 6777470 6777561 -137008894 + L2 LINE L2 3138 3208 -105 1644 167 25 7 chr12 6777561 6777837 -137008618 - AluJb SINE Alu -18 294 14 189 299 22 103 chr12 6777837 6777929 -137008526 + L2 LINE L2 3208 3306 -7 323 268 45 0 chr12 6777994 6778106 -137008349 + L1ME3A LINE L1 6049 6165 -5 214 333 103 0 chr12 6779021 6779108 -137007347 + L3b LINE CR1 1300 1395 -188 1685 116 0 144 chr12 6781630 6781976 -137004479 - AluJo SINE Alu -12 300 5 342 348 78 15 chr12 6782380 6782650 -137003805 - L2 LINE L2 -1 3271 2985 188 231 0 108 chr12 6782776 6782841 -137003614 + L2 LINE L2 3190 3247 -66 234 0 0 0 chr12 6782867 6782893 -137003562 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 315 0 0 0 chr12 6782892 6782927 -137003528 + (CA)n Simple_repeat Simple_repeat 1 35 0 361 230 130 20 chr12 6783201 6783301 -137003154 + L2 LINE L2 3143 3253 -19 492 328 18 23 chr12 6783305 6783476 -137002979 - MIR SINE MIR -49 213 44 329 306 65 102 chr12 6785350 6785595 -137000860 + MIR SINE MIR 10 245 -17 282 244 89 89 chr12 6785799 6785934 -137000521 + MIR SINE MIR 58 192 -70 1941 147 17 0 chr12 6786092 6786391 -137000064 - AluJb SINE Alu -4 308 5 256 246 179 45 chr12 6786393 6786527 -136999928 - MIR3 SINE MIR -55 153 2 384 326 59 0 chr12 6787092 6787227 -136999228 + MIR SINE MIR 118 260 -2 849 209 37 0 chr12 6787228 6787391 -136999064 - AluJo SINE Alu -20 292 124 2222 83 3 0 chr12 6787471 6787761 -136998694 + AluSg SINE Alu 1 291 -19 2146 100 10 0 chr12 6787778 6788069 -136998386 - AluSq SINE Alu -19 294 1 180 0 0 0 chr12 6788486 6788506 -136997949 + (CA)n Simple_repeat Simple_repeat 1 20 0 208 250 0 60 chr12 6788507 6788591 -136997864 + MIR3 SINE MIR 12 90 -118 487 316 26 94 chr12 6789892 6790275 -136996180 - L2 LINE L2 0 3272 2916 214 285 15 66 chr12 6790981 6791118 -136995337 + G-rich Low_complexity Low_complexity 4 133 0 713 184 0 63 chr12 6792640 6792786 -136993669 + FRAM SINE Alu 1 30 -146 2285 72 0 0 chr12 6792786 6793076 -136993379 - AluY SINE Alu -21 290 1 713 184 0 63 chr12 6793076 6793087 -136993368 + FRAM SINE Alu 30 40 0 3328 161 21 81 chr12 6793087 6793201 -136993254 + L1MB8 LINE L1 5288 5407 -771 2638 26 0 7 chr12 6793201 6793510 -136992945 + AluY SINE Alu 1 307 -4 3328 161 21 81 chr12 6793510 6793605 -136992850 + L1MB8 LINE L1 5407 5506 -672 2046 124 3 10 chr12 6793605 6793949 -136992506 + AluSx SINE Alu 1 312 0 3328 161 21 81 chr12 6793949 6794392 -136992063 + L1MB8 LINE L1 5506 5974 -204 2098 107 7 16 chr12 6794392 6794700 -136991755 + AluSx SINE Alu 1 305 -7 3328 161 21 81 chr12 6794700 6794809 -136991646 + L1MB8 LINE L1 5974 5980 -198 1782 158 31 0 chr12 6794809 6795101 -136991354 - AluJb SINE Alu -11 301 1 3328 161 21 81 chr12 6795101 6795289 -136991166 + L1MB8 LINE L1 5980 6178 0 363 342 33 0 chr12 6795658 6795778 -136990677 + MIR3 SINE MIR 82 205 -3 398 235 68 43 chr12 6796248 6796410 -136990045 - Charlie7 DNA MER1_type -7 2605 2440 2393 62 7 0 chr12 6796630 6796939 -136989516 - AluY SINE Alu 0 311 1 2020 82 0 4 chr12 6797039 6797308 -136989147 + AluY SINE Alu 41 308 -3 528 269 69 0 chr12 6799059 6799219 -136987236 - MIR SINE MIR -14 248 78 222 316 30 98 chr12 6799354 6799487 -136986968 + L2 LINE L2 3143 3266 -6 315 0 0 0 chr12 6799488 6799523 -136986932 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 192 245 53 10 chr12 6799949 6800052 -136986403 + MIR3 SINE MIR 78 164 -44 1832 114 70 0 chr12 6800346 6800617 -136985838 + AluSq SINE Alu 5 294 -19 781 203 89 72 chr12 6800734 6800766 -136985689 + MIR SINE MIR 2 32 -230 2144 107 3 3 chr12 6800766 6801066 -136985389 + AluSq SINE Alu 1 300 -13 781 203 89 72 chr12 6801066 6801269 -136985186 + MIR SINE MIR 32 241 -21 4039 149 25 26 chr12 6801297 6801627 -136984828 + L1MB7 LINE L1 5454 5783 -401 2039 129 0 3 chr12 6801627 6801930 -136984525 + AluJo SINE Alu 1 302 -10 4039 149 25 26 chr12 6801930 6802331 -136984124 + L1MB7 LINE L1 5783 6184 0 2243 135 95 32 chr12 6802452 6802811 -136983644 + MSTB LTR MaLR 2 390 -36 2304 104 0 0 chr12 6802811 6803119 -136983336 - AluSx SINE Alu -2 310 3 2243 135 95 32 chr12 6803119 6803159 -136983296 + MSTB LTR MaLR 390 426 0 388 286 21 36 chr12 6804108 6804248 -136982207 + L2 LINE L2 3176 3313 0 351 360 36 7 chr12 6804272 6804411 -136982044 - MIR3 SINE MIR -65 143 1 2134 91 10 19 chr12 6804508 6804817 -136981638 + AluSp SINE Alu 1 306 -7 219 225 338 0 chr12 6805582 6805662 -136980793 - MIR SINE MIR -59 149 43 1784 146 10 20 chr12 6805731 6806033 -136980422 - AluJb SINE Alu -13 299 1 213 39 0 0 chr12 6806186 6806212 -136980243 + (TAA)n Simple_repeat Simple_repeat 2 27 0 26 74 0 0 chr12 6806435 6806489 -136979966 + GC_rich Low_complexity Low_complexity 1 54 0 191 298 35 0 chr12 6807279 6807336 -136979119 - MER5B DNA MER1_type -68 110 52 1520 247 78 38 chr12 6807444 6807524 -136978931 + L1M4 LINE L1 4252 4327 -1819 2374 53 0 23 chr12 6807524 6807827 -136978628 + AluY SINE Alu 1 296 -15 1520 247 78 38 chr12 6807827 6808077 -136978378 + L1M4 LINE L1 4327 4566 -1580 1787 129 24 14 chr12 6808077 6808371 -136978084 - AluJb SINE Alu -15 297 1 1520 247 78 38 chr12 6808371 6808849 -136977606 + L1M4 LINE L1 4566 5093 -1053 2175 60 28 0 chr12 6808920 6809204 -136977251 - AluY SINE Alu -19 292 1 1146 162 56 49 chr12 6809223 6809489 -136976966 + L1M4 LINE L1 5514 5781 -403 347 244 0 26 chr12 6809532 6809569 -136976886 + L1ME3 LINE L1 5648 5684 -487 2329 82 3 0 chr12 6809569 6809873 -136976582 + AluSp SINE Alu 1 305 -8 347 244 0 26 chr12 6809873 6809949 -136976506 + L1ME3 LINE L1 5684 5758 -413 1910 158 3 0 chr12 6810008 6810305 -136976150 + AluJb SINE Alu 2 299 -13 269 170 0 0 chr12 6810309 6810356 -136976099 - MIR SINE MIR 0 262 216 546 141 10 10 chr12 6810381 6810480 -136975975 - MER57A LTR ERV1 0 403 305 736 210 204 41 chr12 6810482 6810796 -136975659 + L1ME3 LINE L1 5798 6162 0 380 264 36 9 chr12 6810796 6810906 -136975549 - MER5B DNA MER1_type -49 129 17 418 214 74 107 chr12 6811113 6811181 -136975274 - MIR SINE MIR -4 258 189 2215 181 2 19 chr12 6811181 6811591 -136974864 - MER57A LTR ERV1 0 403 1 418 214 74 107 chr12 6811591 6811737 -136974718 - MIR SINE MIR -73 189 51 484 240 23 57 chr12 6811829 6811996 -136974459 + MIR SINE MIR 33 199 -48 184 255 0 20 chr12 6812041 6812092 -136974363 - MIR SINE MIR -77 131 82 245 266 49 0 chr12 6812288 6812431 -136974024 + (CCTG)n Simple_repeat Simple_repeat 1 150 0 2382 66 0 7 chr12 6812601 6812906 -136973549 + AluY SINE Alu 1 303 -8 599 275 41 0 chr12 6813189 6813360 -136973095 - MIR SINE MIR -75 187 10 308 93 0 19 chr12 6814583 6814637 -136971818 + (TGGGGG)n Simple_repeat Simple_repeat 2 54 0 589 266 7 0 chr12 6814643 6814786 -136971669 + MIR SINE MIR 53 196 -66 1623 108 21 4 chr12 6814847 6815088 -136971367 - AluSx SINE Alu -7 305 61 413 107 0 0 chr12 6815137 6815193 -136971262 - AluSx SINE Alu -256 57 2 28 0 0 0 chr12 6815195 6815223 -136971232 + AT_rich Low_complexity Low_complexity 1 28 0 389 313 33 13 chr12 6815224 6815374 -136971081 + MIR SINE MIR 82 234 -28 451 216 120 0 chr12 6815956 6816081 -136970374 + MIR SINE MIR 56 195 -67 186 224 0 0 chr12 6817127 6817176 -136969279 + G-rich Low_complexity Low_complexity 5 53 0 279 295 16 23 chr12 6818244 6818373 -136968082 + CT-rich Low_complexity Low_complexity 4 131 0 271 310 110 14 chr12 6820064 6820209 -136966246 - L2 LINE L2 -173 3099 2941 258 359 35 14 chr12 6820351 6820493 -136965962 - MIR3 SINE MIR -62 146 2 870 225 0 11 chr12 6821326 6821517 -136964938 - AluJo SINE Alu -1 311 123 293 246 0 14 chr12 6821520 6821589 -136964866 + MIR SINE MIR 82 149 -59 421 261 37 22 chr12 6821648 6821782 -136964673 - MIR3 SINE MIR -54 154 19 22 0 0 0 chr12 6822139 6822161 -136964294 + AT_rich Low_complexity Low_complexity 1 22 0 257 0 0 0 chr12 6822197 6822227 -136964228 - MER11C LTR ERVK -1041 30 1 2265 86 0 13 chr12 6822698 6823013 -136963442 + AluY SINE Alu 1 311 0 977 176 32 68 chr12 6823055 6823276 -136963179 - MER20 DNA MER1_type 0 219 7 2015 128 0 28 chr12 6823448 6823769 -136962686 + AluSx SINE Alu 1 312 0 747 264 103 35 chr12 6824101 6824449 -136962006 - LTR33A LTR ERVL -12 511 140 367 282 10 87 chr12 6824663 6824742 -136961713 + L1ME3 LINE L1 5973 6057 -105 2123 126 3 0 chr12 6824742 6825051 -136961404 + AluSg SINE Alu 1 310 0 367 282 10 87 chr12 6825051 6825177 -136961278 + L1ME3 LINE L1 6057 6162 0 521 208 51 97 chr12 6825231 6825447 -136961008 + L1MC5 LINE L1 7697 7902 -59 188 302 94 10 chr12 6825937 6826033 -136960422 + MIR3 SINE MIR 2 105 -103 * 374 309 87 0 chr12 6826030 6826156 -136960299 - L2 LINE L2 0 3272 3136 193 338 39 0 chr12 6826414 6826491 -136959964 + MIR3 SINE MIR 108 187 -21 2568 30 3 0 chr12 6828674 6828972 -136957483 + AluY SINE Alu 1 299 -12 288 0 0 0 chr12 6829654 6829686 -136956769 + (CA)n Simple_repeat Simple_repeat 2 33 0 716 308 5 19 chr12 6829988 6830199 -136956256 - MIR SINE MIR -30 232 25 371 294 117 4 chr12 6830202 6830433 -136956022 - L1ME4a LINE L1 -21 6100 5844 410 240 199 0 chr12 6830465 6830611 -136955844 - MIR3 SINE MIR -14 194 20 1287 224 99 11 chr12 6831974 6832336 -136954119 - L2 LINE L2 0 3313 2920 279 194 0 60 chr12 6832410 6832477 -136953978 + AluJo SINE Alu 85 147 -155 2120 93 0 4 chr12 6832592 6832872 -136953583 + AluSx SINE Alu 24 302 -10 832 176 0 13 chr12 6832883 6833036 -136953419 + FRAM SINE Alu 26 176 0 295 181 28 0 chr12 6833036 6833108 -136953347 + GA-rich Low_complexity Low_complexity 1 74 0 844 212 88 14 chr12 6834746 6834963 -136951492 - MIR SINE MIR -2 260 28 1781 153 3 10 chr12 6835158 6835459 -136950996 - AluJo SINE Alu -13 299 1 1606 175 7 20 chr12 6836149 6836441 -136950014 - AluJo SINE Alu -22 290 3 2138 169 54 16 chr12 6836450 6836823 -136949632 - MLT1B LTR MaLR -3 387 1 786 310 40 23 chr12 6837208 6837605 -136948850 + L1M3b LINE L1 1 404 -5877 500 317 50 19 chr12 6837886 6838145 -136948310 + MLT1L LTR MaLR 322 588 -27 932 197 0 0 chr12 6838430 6838582 -136947873 + MER44D DNA MER2_type 13 164 -541 854 193 46 47 chr12 6838906 6839259 -136947196 + LTR35 LTR ERV1 191 618 0 1832 162 17 5 chr12 6839259 6839775 -136946680 + MER44D DNA MER2_type 160 605 0 1106 261 53 78 chr12 6839793 6840121 -136946334 - L1MC4a LINE L1 -1913 5895 5560 2391 58 0 3 chr12 6840121 6840416 -136946039 - AluY SINE Alu -17 294 1 1106 261 53 78 chr12 6840416 6840670 -136945785 - L1MC4a LINE L1 -2248 5560 5326 1814 135 37 7 chr12 6840670 6840966 -136945489 - AluJb SINE Alu -7 305 1 1106 261 53 78 chr12 6840966 6840987 -136945468 - L1MC4a LINE L1 -2482 5326 5306 261 294 105 46 chr12 6841083 6841367 -136945088 - L1MC4a LINE L1 -1307 4839 4516 2322 92 0 0 chr12 6841367 6841671 -136944784 - AluSx SINE Alu -8 304 1 261 294 105 46 chr12 6841671 6841842 -136944613 - L1MC4a LINE L1 -1630 4516 4357 2384 77 0 0 chr12 6841894 6842205 -136944250 - AluY SINE Alu 0 311 1 804 164 0 14 chr12 6842253 6842393 -136944062 - AluJo SINE Alu -174 138 1 834 150 0 14 chr12 6842441 6842581 -136943874 - AluJo SINE Alu -174 138 1 855 143 0 14 chr12 6842629 6842769 -136943686 - AluJo SINE Alu -174 138 1 320 272 98 0 chr12 6842803 6842895 -136943560 - L1MC4a LINE L1 -2012 4134 4034 213 270 14 27 chr12 6843017 6843091 -136943364 - L2 LINE L2 -742 2572 2500 324 368 95 35 chr12 6843163 6843617 -136942838 - L2 LINE L2 -7 3265 2736 233 193 0 18 chr12 6843635 6843692 -136942763 + L1MC4 LINE L1 6648 6703 -1339 347 247 71 0 chr12 6843697 6843782 -136942673 + L1MC4 LINE L1 6618 6708 -1334 1954 117 0 0 chr12 6843783 6844056 -136942399 - AluSx SINE Alu -39 273 1 467 256 47 0 chr12 6844067 6844196 -136942259 - L1ME3 LINE L1 -30 6132 5998 1938 137 13 0 chr12 6844295 6844595 -136941860 - AluSq SINE Alu -9 304 1 1753 129 47 35 chr12 6844608 6844926 -136941529 - L1MD3 LINE L1 0 7995 7674 1342 177 15 11 chr12 6844926 6845192 -136941263 + AluJb SINE Alu 46 312 0 712 129 39 25 chr12 6845195 6845327 -136941128 - L1ME3 LINE L1 -568 5594 5455 1926 79 0 0 chr12 6845505 6845757 -136940698 - AluY SINE Alu 0 311 60 2643 223 76 19 chr12 6845974 6846169 -136940286 - L1MC/D LINE L1 -743 6198 6016 2040 125 0 22 chr12 6846169 6846305 -136940150 + AluSx SINE Alu 1 138 -174 2259 86 3 10 chr12 6846305 6846619 -136939836 + AluSp SINE Alu 1 312 -1 2040 125 0 22 chr12 6846619 6846801 -136939654 + AluSx SINE Alu 138 312 0 2643 223 76 19 chr12 6846801 6847552 -136938903 - L1MC/D LINE L1 -925 6016 5291 1566 170 6 45 chr12 6847556 6847867 -136938588 - AluJo SINE Alu -13 299 1 317 269 80 70 chr12 6848020 6848421 -136938034 - L1MC5 LINE L1 -62 7899 7495 300 252 84 8 chr12 6848420 6848539 -136937916 - L1MC5 LINE L1 -1201 6760 6633 * 2283 80 0 0 chr12 6848556 6848857 -136937598 - AluSx SINE Alu -11 301 1 472 279 39 0 chr12 6849574 6849703 -136936752 - ERVL LTR ERVL -1271 4493 4360 735 301 57 52 chr12 6849731 6849844 -136936611 - ERVL LTR ERVL -1496 4268 4157 2241 92 0 0 chr12 6849844 6850138 -136936317 - AluSx SINE Alu -12 300 7 735 301 57 52 chr12 6850138 6850519 -136935936 - ERVL LTR ERVL -1607 4157 3772 300 280 0 0 chr12 6850589 6850664 -136935791 - MIR SINE MIR 0 262 188 2042 122 13 0 chr12 6850788 6851130 -136935325 - AluSx SINE Alu 0 312 1 419 219 29 0 chr12 6851138 6851243 -136935212 - L1MC/D LINE L1 -1662 5279 5172 955 182 79 105 chr12 6851263 6851295 -136935160 - L1MCc LINE L1 -4620 2502 2471 1969 105 40 7 chr12 6851295 6851591 -136934864 - AluSq SINE Alu -7 306 1 955 182 79 105 chr12 6851591 6851689 -136934766 - L1MCc LINE L1 -4651 2471 2372 830 161 0 0 chr12 6851689 6851819 -136934636 + FLAM_C SINE Alu 1 130 -3 955 182 79 105 chr12 6851819 6851843 -136934612 - L1MCc LINE L1 -4750 2372 2349 1952 107 71 0 chr12 6851843 6852123 -136934332 + AluSx SINE Alu 1 300 -12 955 182 79 105 chr12 6852123 6852433 -136934022 - L1MCc LINE L1 -4773 2349 2032 186 43 0 0 chr12 6852433 6852456 -136933999 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 955 182 79 105 chr12 6852456 6852596 -136933859 - L1MCc LINE L1 -5090 2032 1681 1176 213 107 80 chr12 6853088 6853360 -136933095 - L1MCc LINE L1 -4852 1570 1307 1879 133 13 32 chr12 6853360 6853676 -136932779 - AluSg SINE Alu 0 310 1 1176 213 107 80 chr12 6853676 6854166 -136932289 - L1MCc LINE L1 -5115 1307 814 1983 124 17 0 chr12 6854286 6854584 -136931871 - AluSx SINE Alu -9 303 1 231 317 33 28 chr12 6854704 6854884 -136931571 - L1MCc LINE L1 -5981 442 262 377 210 48 29 chr12 6854901 6855049 -136931406 - L1MCb LINE L1 -5890 532 52 1591 93 4 9 chr12 6855119 6855344 -136931111 - AluSg/x SINE Alu -16 296 73 1472 211 39 58 chr12 6855344 6855589 -136930866 - L1MCa LINE L1 -1453 4973 4738 2050 119 0 0 chr12 6855589 6855883 -136930572 - AluSx SINE Alu -14 298 5 1472 211 39 58 chr12 6855883 6856069 -136930386 - L1MCa LINE L1 -1688 4738 4550 1899 125 0 7 chr12 6856069 6856358 -136930097 + AluSx SINE Alu 1 287 -25 5471 192 52 39 chr12 6856366 6856711 -136929744 - L1MCa LINE L1 -2438 3988 3649 2092 110 3 3 chr12 6856711 6857012 -136929443 - AluSq SINE Alu -12 301 1 5471 192 52 39 chr12 6857012 6858062 -136928393 - L1MCa LINE L1 -2777 3649 2556 2215 110 0 3 chr12 6858062 6858372 -136928083 - AluSg SINE Alu -1 309 1 5471 192 52 39 chr12 6858372 6859000 -136927455 - L1MCa LINE L1 -3870 2556 1937 982 105 0 0 chr12 6859000 6859133 -136927322 + AluSq/x SINE Alu 1 133 -179 1916 157 0 3 chr12 6859145 6859458 -136926997 + AluSx SINE Alu 1 312 0 238 364 178 0 chr12 6859557 6859675 -136926780 - L2 LINE L2 0 3272 3134 407 341 116 26 chr12 6859767 6860269 -136926186 + L2 LINE L2 863 1409 -1905 425 167 3 0 chr12 6860283 6860367 -136926088 + L1ME2 LINE L1 5459 5543 -621 3090 146 62 22 chr12 6860371 6860905 -136925550 - MER21A LTR ERV1 0 931 377 1478 107 95 8 chr12 6860911 6861154 -136925301 - MER21A LTR ERV1 -667 264 1 1662 168 35 17 chr12 6861157 6861502 -136924953 + L1ME2 LINE L1 5546 5896 -268 1756 127 10 45 chr12 6861510 6861824 -136924631 + AluSq SINE Alu 1 303 -10 645 168 44 0 chr12 6861833 6861946 -136924509 - L1ME LINE L1 -421 5700 5583 211 333 55 36 chr12 6862047 6862212 -136924243 + L2 LINE L2 3105 3272 -41 297 218 0 0 chr12 6862464 6862519 -136923936 - MER91 DNA MER1_type -7 189 135 182 345 18 35 chr12 6862621 6862734 -136923721 + L2 LINE L2 2981 3091 -181 1761 141 17 7 chr12 6862790 6863087 -136923368 + AluJb SINE Alu 1 300 -12 2394 68 7 0 chr12 6863155 6863463 -136922992 - AluSg SINE Alu 0 310 1 217 250 39 0 chr12 6863483 6863535 -136922920 + L2 LINE L2 3258 3311 -2 241 326 45 11 chr12 6863539 6863628 -136922827 + MIR3 SINE MIR 102 193 -15 2088 104 0 3 chr12 6864307 6864626 -136921829 - AluSx SINE Alu 0 312 1 258 32 0 0 chr12 6864638 6864669 -136921786 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1269 121 0 0 chr12 6864669 6864851 -136921604 - AluSg/x SINE Alu -2 310 129 2294 82 26 0 chr12 6864851 6865155 -136921300 - AluSx SINE Alu 0 312 1 667 162 8 17 chr12 6865182 6865299 -136921156 + FLAM_C SINE Alu 3 118 -25 2028 100 3 14 chr12 6865305 6865621 -136920834 - AluSg SINE Alu 0 310 1 2315 93 0 3 chr12 6865674 6865984 -136920471 - AluSc SINE Alu 0 309 1 3157 117 7 7 chr12 6866215 6866678 -136919777 - L1PB4 LINE L1 0 6156 5694 25 0 0 0 chr12 6867447 6867472 -136918983 + AT_rich Low_complexity Low_complexity 1 25 0 386 274 46 39 chr12 6867735 6867888 -136918567 + MLT2E LTR ERVL 1 154 -474 637 273 47 13 chr12 6867907 6868302 -136918153 + MLT2F LTR ERVL 213 661 -2 25 0 0 0 chr12 6868450 6868475 -136917980 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr12 6868508 6868539 -136917916 + AT_rich Low_complexity Low_complexity 1 31 0 1893 148 0 3 chr12 6868539 6868844 -136917611 + AluJb SINE Alu 2 305 -7 1598 146 0 43 chr12 6869520 6869801 -136916654 + AluSx SINE Alu 1 269 -43 230 121 0 0 chr12 6869801 6869834 -136916621 + AluSx SINE Alu 249 281 -20 186 0 88 0 chr12 6869838 6869872 -136916583 + A-rich Low_complexity Low_complexity 2 38 0 1810 137 16 22 chr12 6870307 6870621 -136915834 + AluJb SINE Alu 1 312 0 2126 100 3 7 chr12 6870646 6870945 -136915510 + AluSq SINE Alu 1 298 -15 4329 177 27 44 chr12 6870945 6871010 -136915445 + L1MB7 LINE L1 4362 4427 -1753 2078 123 0 3 chr12 6871010 6871311 -136915144 + AluSx SINE Alu 1 300 -12 4329 177 27 44 chr12 6871311 6872033 -136914422 + L1MB7 LINE L1 4427 5159 -1021 2363 51 7 0 chr12 6872033 6872328 -136914127 - AluY SINE Alu -14 297 1 4329 177 27 44 chr12 6872328 6872401 -136914054 + L1MB7 LINE L1 5159 5232 -948 2188 63 0 48 chr12 6872401 6872716 -136913739 - AluY SINE Alu -11 300 1 4329 177 27 44 chr12 6872716 6873001 -136913454 + L1MB7 LINE L1 5232 5488 -692 304 193 91 0 chr12 6873008 6873096 -136913359 + L1MB7 LINE L1 6073 6168 -16 781 315 91 26 chr12 6873533 6874102 -136912353 + L1MC4a LINE L1 5347 5952 -1856 1617 189 10 0 chr12 6874219 6874520 -136911935 + AluJo SINE Alu 1 304 -8 22 0 0 0 chr12 6874935 6874957 -136911498 + AT_rich Low_complexity Low_complexity 1 22 0 2122 104 0 0 chr12 6874963 6875276 -136911179 + AluSc SINE Alu 1 313 0 2085 132 3 0 chr12 6875276 6875580 -136910875 + AluSq SINE Alu 1 305 -8 1837 136 34 0 chr12 6875610 6875905 -136910550 + AluSx SINE Alu 8 312 0 360 130 91 26 chr12 6876302 6876379 -136910076 - L1ME3A LINE L1 -208 5962 5881 480 101 56 11 chr12 6876427 6876516 -136909939 - L1MB4 LINE L1 -1 6179 6087 357 244 16 32 chr12 6876517 6876640 -136909815 - L1ME3A LINE L1 -296 5874 5754 638 174 39 0 chr12 6876643 6876798 -136909657 + CT-rich Low_complexity Low_complexity 3 163 0 1583 138 0 0 chr12 6876799 6877039 -136909416 - AluSx SINE Alu -64 248 9 180 0 0 0 chr12 6877043 6877063 -136909392 + (CTTG)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr12 6877214 6877243 -136909212 + AT_rich Low_complexity Low_complexity 1 29 0 371 155 184 19 chr12 6877440 6877543 -136908912 + MIR SINE MIR 31 150 -58 476 219 102 71 chr12 6877755 6877951 -136908504 + MER63A DNA MER1_type 2 203 -7 1857 118 0 70 chr12 6878197 6878336 -136908119 + AluJb SINE Alu 7 113 -199 2176 89 3 0 chr12 6878336 6878629 -136907826 + AluSp SINE Alu 2 295 -18 1857 118 0 70 chr12 6878629 6878804 -136907651 + AluJb SINE Alu 113 299 -13 2216 98 3 0 chr12 6878830 6879127 -136907328 + AluSx SINE Alu 5 302 -10 257 372 92 9 chr12 6879380 6879598 -136906857 - MIR SINE MIR -6 256 21 1444 114 72 50 chr12 6879938 6880224 -136906231 + AluJo SINE Alu 14 305 0 2374 71 0 3 chr12 6880226 6880536 -136905919 + AluY SINE Alu 1 309 -2 577 308 18 27 chr12 6880537 6880758 -136905697 + L1MEd LINE L1 473 691 -5428 691 126 10 0 chr12 6880826 6880929 -136905526 - FLAM_C SINE Alu -32 111 8 384 229 120 17 chr12 6880997 6881172 -136905283 + Charlie7 DNA MER1_type 2205 2397 -215 646 144 10 0 chr12 6881290 6881387 -136905068 - AluJ/FLAM SINE Alu -213 99 2 26 30 0 0 chr12 6881488 6881521 -136904934 + AT_rich Low_complexity Low_complexity 1 33 0 821 235 105 25 chr12 6882291 6882380 -136904075 + L1MEd LINE L1 2661 2742 -3387 1796 199 84 31 chr12 6882380 6882858 -136903597 - MLT1D LTR MaLR 0 505 3 821 235 105 25 chr12 6882858 6883160 -136903295 + L1MEd LINE L1 2742 3083 -3046 1957 122 7 0 chr12 6883161 6883447 -136903008 + AluSx SINE Alu 2 289 -23 21 0 0 0 chr12 6883538 6883559 -136902896 + AT_rich Low_complexity Low_complexity 1 21 0 1759 148 0 19 chr12 6883796 6884106 -136902349 - AluJo SINE Alu -8 304 1 389 316 19 52 chr12 6884127 6884282 -136902173 + L2 LINE L2 3121 3270 -2 2148 114 0 9 chr12 6885219 6885534 -136900921 + AluSx SINE Alu 1 312 0 985 132 0 0 chr12 6885751 6885887 -136900568 + AluSq/x SINE Alu 1 136 -177 1593 165 110 0 chr12 6885887 6886159 -136900296 + AluSg SINE Alu 1 302 -8 814 220 129 4 chr12 6887366 6887598 -136898857 + MER46C DNA MER2_type 78 338 0 872 204 0 0 chr12 6889349 6889501 -136896954 - FRAM SINE Alu -11 165 14 1284 156 66 80 chr12 6889542 6889825 -136896630 + AluJb SINE Alu 3 282 -26 216 0 0 0 chr12 6889825 6889849 -136896606 + (CA)n Simple_repeat Simple_repeat 1 24 0 1975 141 0 33 chr12 6889859 6890165 -136896290 + AluJb SINE Alu 9 304 -8 216 0 0 0 chr12 6890668 6890692 -136895763 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1886 39 0 0 chr12 6890695 6890925 -136895530 - L1PA5 LINE L1 -13 6141 5912 2186 94 7 3 chr12 6891547 6891834 -136894621 + AluSg SINE Alu 16 303 -7 561 163 71 21 chr12 6891876 6891990 -136894465 - L1MB7 LINE L1 -78 6106 5999 213 39 0 0 chr12 6891990 6892016 -136894439 + (CCCCAG)n Simple_repeat Simple_repeat 3 28 0 561 163 71 21 chr12 6892016 6892034 -136894421 - L1MB7 LINE L1 -185 5999 5983 2155 138 0 3 chr12 6892034 6892345 -136894110 - AluJb SINE Alu -2 310 1 1018 91 0 0 chr12 6892352 6892484 -136893971 - AluSg/x SINE Alu 0 309 178 335 239 60 0 chr12 6892488 6892605 -136893850 + L1ME3A LINE L1 6043 6166 -4 2322 113 0 3 chr12 6892617 6892926 -136893529 + AluSq SINE Alu 1 308 -5 2371 101 10 0 chr12 6896784 6897091 -136889364 + AluSq SINE Alu 1 310 -3 2212 122 3 0 chr12 6897235 6897539 -136888916 + AluSx SINE Alu 1 305 -7 504 214 24 71 chr12 6898112 6898280 -136888175 - L1MC4 LINE L1 -16 8026 7867 632 229 13 38 chr12 6898432 6898589 -136887866 + MER97b DNA MER1_type? 27 179 -874 653 119 9 37 chr12 6898701 6898810 -136887645 + FLAM_A SINE Alu 4 109 -33 2270 107 10 0 chr12 6898812 6899103 -136887352 - AluSx SINE Alu -18 294 1 650 242 96 42 chr12 6899142 6899402 -136887053 - L1MC4 LINE L1 -313 7729 7456 2099 88 4 0 chr12 6899412 6899673 -136886782 - AluSp SINE Alu -13 300 39 2474 89 6 10 chr12 6899686 6900000 -136886455 - AluSq SINE Alu 0 313 1 235 224 0 0 chr12 6900073 6900122 -136886333 - MIR SINE MIR -157 105 57 357 222 70 105 chr12 6901118 6901153 -136885302 - MER97b DNA MER1_type? -886 167 132 2276 87 35 0 chr12 6901153 6901439 -136885016 + AluSg SINE Alu 1 296 -14 357 222 70 105 chr12 6901439 6901574 -136884881 - MER97b DNA MER1_type? -921 132 3 222 264 85 28 chr12 6902209 6902315 -136884140 - L2 LINE L2 -39 3233 3122 339 298 193 6 chr12 6902506 6902687 -136883768 - MIR SINE MIR -13 249 35 351 0 0 0 chr12 6902772 6902811 -136883644 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2209 123 3 0 chr12 6902813 6903113 -136883342 - AluSx SINE Alu -11 301 1 2008 136 0 4 chr12 6903293 6903608 -136882847 - AluSx SINE Alu 0 316 3 180 0 0 0 chr12 6907854 6907874 -136878581 + (CAGG)n Simple_repeat Simple_repeat 1 20 0 366 107 0 0 chr12 6908402 6908458 -136877997 + (TA)n Simple_repeat Simple_repeat 1 56 0 303 28 0 0 chr12 6908458 6908494 -136877961 + (TG)n Simple_repeat Simple_repeat 2 37 0 893 128 0 0 chr12 6909399 6909532 -136876923 + FLAM_A SINE Alu 1 133 0 2628 65 8 0 chr12 6909826 6910178 -136876277 + THE1A LTR MaLR 1 355 0 2890 48 0 3 chr12 6910178 6910549 -136875906 + THE1A-int LTR MaLR 1 370 -1210 4842 114 3 1 chr12 6910560 6911244 -136875211 + THE1A-int LTR MaLR 482 1166 -414 240 287 201 12 chr12 6914269 6914433 -136872022 + L2 LINE L2 2335 2529 -785 1410 188 61 37 chr12 6914487 6914543 -136871912 - HsTC2 DNA Tc2 -22 1876 1823 2283 97 7 3 chr12 6914543 6914841 -136871614 + AluSx SINE Alu 1 299 -13 1410 188 61 37 chr12 6914841 6915194 -136871261 - HsTC2 DNA Tc2 -75 1823 1281 1008 169 5 31 chr12 6915565 6915745 -136870710 + AluJo SINE Alu 123 299 -13 2109 132 26 0 chr12 6915745 6916049 -136870406 + AluSx SINE Alu 1 312 0 1008 169 5 31 chr12 6916049 6916063 -136870392 + AluJo SINE Alu 299 312 0 1911 143 0 28 chr12 6916164 6916451 -136870004 + AluJb SINE Alu 11 289 -23 2646 45 0 13 chr12 6916470 6916778 -136869677 - AluY SINE Alu -7 304 1 2602 177 73 90 chr12 6916778 6917559 -136868896 - L1MD2 LINE L1 -10 6349 5582 571 146 0 0 chr12 6917564 6917646 -136868809 - FLAM_A SINE Alu -41 101 20 604 181 39 19 chr12 6917664 6917819 -136868636 - L1MD2 LINE L1 -879 5480 5323 7546 45 3 200 chr12 6917819 6919189 -136867266 - SVA Other Other -4 1382 283 1286 103 6 0 chr12 6919189 6919354 -136867101 - AluSq SINE Alu -134 179 14 325 296 35 52 chr12 6919392 6919507 -136866948 - HAL1 LINE L1 -1230 1277 1165 547 317 27 0 chr12 6919507 6919693 -136866762 - L1MEd LINE L1 -5368 751 561 615 177 54 20 chr12 6920164 6920311 -136866144 + L1M4 LINE L1 4695 4846 -1300 2464 77 0 3 chr12 6920320 6920619 -136865836 - AluSc SINE Alu -11 298 1 26 0 0 0 chr12 6923902 6923928 -136862527 + AT_rich Low_complexity Low_complexity 1 26 0 2298 73 45 7 chr12 6924087 6924376 -136862079 - AluSg SINE Alu -10 300 1 21 36 0 0 chr12 6924805 6924833 -136861622 + AT_rich Low_complexity Low_complexity 1 28 0 2310 92 3 3 chr12 6925217 6925510 -136860945 + AluSg SINE Alu 1 293 -17 1637 202 14 10 chr12 6925660 6925957 -136860498 + AluJo SINE Alu 1 298 -14 717 121 44 117 chr12 6925966 6926099 -136860356 + L1MB8 LINE L1 5823 5964 -220 2095 114 3 24 chr12 6926099 6926396 -136860059 + AluSx SINE Alu 18 308 -4 717 121 44 117 chr12 6926396 6926417 -136860038 + L1MB8 LINE L1 5964 5985 -199 1676 148 0 0 chr12 6926417 6926647 -136859808 + AluSx SINE Alu 1 230 -82 717 121 44 117 chr12 6926647 6926775 -136859680 + L1MB8 LINE L1 5985 6067 -117 2233 106 0 7 chr12 6926816 6927108 -136859347 + AluSc SINE Alu 1 290 -19 1361 136 37 0 chr12 6927108 6927381 -136859074 + L1MA8 LINE L1 6009 6291 0 512 193 18 0 chr12 6927390 6927504 -136858951 + L1MB7 LINE L1 6050 6165 -19 183 80 0 0 chr12 6927681 6927706 -136858749 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 648 170 36 0 chr12 6927706 6927818 -136858637 - AluJb SINE Alu -195 117 2 305 240 20 137 chr12 6927819 6927887 -136858568 - HAL1 LINE L1 -139 2368 2294 1896 139 3 58 chr12 6927887 6928027 -136858428 - AluJb SINE Alu 0 312 166 2492 81 0 7 chr12 6928027 6928334 -136858121 - AluSg SINE Alu -5 305 1 1896 139 3 58 chr12 6928334 6928523 -136857932 - AluJb SINE Alu -146 166 1 2138 130 0 3 chr12 6928533 6928858 -136857597 - AluSx SINE Alu 0 324 1 305 240 20 137 chr12 6928858 6928923 -136857532 - HAL1 LINE L1 -223 2284 2240 * 475 322 99 5 chr12 6928922 6929124 -136857331 + L1 LINE L1 3893 4113 -2033 1462 80 9 38 chr12 6929124 6929300 -136857155 - AluSg/x SINE Alu -1 309 138 2195 91 0 18 chr12 6929300 6929613 -136856842 - AluSq SINE Alu 0 313 9 1462 80 9 38 chr12 6929613 6929649 -136856806 - AluSg/x SINE Alu -172 138 103 1678 128 6 106 chr12 6929701 6930030 -136856425 - AluJo SINE Alu -10 302 7 2355 97 0 0 chr12 6930127 6930426 -136856029 + AluY SINE Alu 1 299 -12 1614 116 16 0 chr12 6930432 6930682 -136855773 - L1M4 LINE L1 -382 5802 5549 2506 65 0 0 chr12 6930693 6930985 -136855470 - AluY SINE Alu -19 292 1 225 254 162 81 chr12 6931102 6931275 -136855180 + L2 LINE L2 2897 3083 -189 1999 156 0 22 chr12 6931372 6931687 -136854768 - AluSx SINE Alu -4 308 1 186 43 0 0 chr12 6931748 6931771 -136854684 + (A)n Simple_repeat Simple_repeat 1 23 0 837 293 52 40 chr12 6931872 6932008 -136854447 + HERV16 LTR ERVL 2404 2537 -2459 1999 150 3 16 chr12 6932008 6932322 -136854133 - AluJb SINE Alu -1 311 2 2322 102 10 0 chr12 6932330 6932634 -136853821 - AluSp SINE Alu -6 307 1 837 293 52 40 chr12 6932634 6932812 -136853643 + HERV16 LTR ERVL 2543 2731 -2265 2253 97 3 13 chr12 6932835 6933135 -136853320 - AluSg SINE Alu -4 306 10 1042 143 104 137 chr12 6933654 6933961 -136852494 - AluJo SINE Alu -5 297 1 1396 160 15 108 chr12 6933972 6934173 -136852282 - AluJo SINE Alu 0 302 143 2100 100 16 48 chr12 6934173 6934483 -136851972 - AluY SINE Alu -11 300 1 1396 160 15 108 chr12 6934483 6934613 -136851842 - AluJo SINE Alu -159 143 2 21 0 0 0 chr12 6934621 6934642 -136851813 + AT_rich Low_complexity Low_complexity 1 21 0 347 250 24 12 chr12 6935591 6935675 -136850780 + MIR SINE MIR 1 85 -177 377 309 7 33 chr12 6936564 6936716 -136849739 - MIR SINE MIR -80 182 35 305 274 92 30 chr12 6937393 6937557 -136848898 + MIR SINE MIR 87 260 -2 587 164 141 16 chr12 6938817 6938945 -136847510 + MIR SINE MIR 9 152 -110 2326 114 0 7 chr12 6939061 6939368 -136847087 - AluSx SINE Alu -2 310 6 1794 164 0 23 chr12 6939419 6939718 -136846737 - AluJb SINE Alu 0 312 21 641 179 0 0 chr12 6939718 6939824 -136846631 - AluJb SINE Alu -59 253 148 241 179 0 0 chr12 6939824 6939863 -136846592 - AluJb SINE Alu -261 39 1 466 101 25 25 chr12 6939863 6939942 -136846513 - Tigger3(Golem) DNA MER2_type -674 2355 2277 * 518 219 29 0 chr12 6939933 6940038 -136846417 - Tigger3(Golem) DNA MER2_type -2921 108 1 1958 93 100 3 chr12 6940314 6940625 -136845830 - L1PA10 LINE L1 -10 6158 5818 2338 97 3 0 chr12 6940630 6940930 -136845525 - AluSg SINE Alu -9 301 1 1687 145 86 21 chr12 6940932 6941222 -136845233 - AluJb SINE Alu -3 309 1 466 250 103 51 chr12 6941313 6941469 -136844986 - L2 LINE L2 -1 3312 3149 2348 147 47 33 chr12 6941472 6941626 -136844829 - MER44D DNA MER2_type -1892 595 445 2233 89 10 3 chr12 6941626 6941917 -136844538 - AluSc SINE Alu -16 293 1 2348 147 47 33 chr12 6941917 6942212 -136844243 - MER44D DNA MER2_type -2042 445 85 1143 173 0 5 chr12 6942213 6942398 -136844057 - AluJb SINE Alu -1 311 128 2119 126 0 13 chr12 6942403 6942705 -136843750 - AluSx SINE Alu -14 298 1 516 194 0 10 chr12 6942705 6942803 -136843652 - MER44D DNA MER2_type -608 97 1 2509 233 190 113 chr12 6942825 6942852 -136843603 - L2 LINE L2 -139 3174 3151 2030 149 3 7 chr12 6942852 6943154 -136843301 + AluJb SINE Alu 1 301 -11 485 181 133 0 chr12 6943159 6943264 -136843191 + FLAM_A SINE Alu 2 120 -13 2509 233 190 113 chr12 6943264 6943546 -136842909 - L2 LINE L2 -165 3148 2889 464 216 116 88 chr12 6943546 6943727 -136842728 + MER5A DNA MER1_type 4 189 0 2509 233 190 113 chr12 6943727 6944070 -136842385 - L2 LINE L2 -424 2889 2574 1071 116 23 52 chr12 6944070 6944242 -136842213 - AluSg/x SINE Alu -13 299 133 1490 116 209 8 chr12 6944242 6944501 -136841954 - AluY SINE Alu 0 311 1 2509 233 190 113 chr12 6944501 6945595 -136840860 - L2 LINE L2 -738 2575 1095 1027 133 20 0 chr12 6945682 6945833 -136840622 + FRAM SINE Alu 1 154 -22 2047 95 24 44 chr12 6945846 6946168 -136840287 - AluSg SINE Alu 0 316 1 1158 258 52 27 chr12 6946288 6946503 -136839952 - MSTD LTR MaLR -15 381 173 2376 71 0 4 chr12 6946503 6946783 -136839672 + AluSg SINE Alu 1 279 -31 1158 258 52 27 chr12 6946783 6946804 -136839651 - MSTD LTR MaLR -223 173 154 1493 94 0 5 chr12 6946804 6946996 -136839459 + AluSg/x SINE Alu 94 284 -25 1158 258 52 27 chr12 6946996 6947127 -136839328 - MSTD LTR MaLR -242 154 4 570 41 0 0 chr12 6947184 6947257 -136839198 + (TA)n Simple_repeat Simple_repeat 2 74 0 1121 159 56 24 chr12 6947260 6947401 -136839054 - Tigger2 DNA MER2_type -3 2715 2580 195 42 0 0 chr12 6947401 6947425 -136839030 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2040 133 4 0 chr12 6947426 6947705 -136838750 - AluSx SINE Alu -32 280 1 1121 159 56 24 chr12 6947705 6947812 -136838643 - Tigger2 DNA MER2_type -137 2581 2457 3089 131 8 82 chr12 6947855 6948086 -136838369 - Tigger2 DNA MER2_type -1974 744 497 2160 102 7 7 chr12 6948086 6948379 -136838076 - AluSq SINE Alu -20 293 1 3089 131 8 82 chr12 6948379 6948570 -136837885 - Tigger2 DNA MER2_type -2221 497 293 1815 153 6 80 chr12 6948570 6948896 -136837559 + AluSx SINE Alu 1 302 -10 3089 131 8 82 chr12 6948896 6948973 -136837482 - Tigger2 DNA MER2_type -2425 293 212 1802 191 10 0 chr12 6948973 6949271 -136837184 - AluJb SINE Alu -11 301 1 3089 131 8 82 chr12 6949271 6949319 -136837136 - Tigger2 DNA MER2_type -2506 212 245 2458 57 0 10 chr12 6949319 6949618 -136836837 + AluY SINE Alu 1 296 -15 3089 131 8 82 chr12 6949618 6949700 -136836755 - Tigger2 DNA MER2_type -2472 246 159 1108 185 0 0 chr12 6949704 6949877 -136836578 + FRAM SINE Alu 1 165 -11 378 218 13 0 chr12 6949877 6949955 -136836500 - Tigger2 DNA MER2_type -2639 79 1 772 266 21 0 chr12 6949955 6950147 -136836308 + L1MC4 LINE L1 6689 6884 -1158 733 161 0 0 chr12 6950147 6950277 -136836178 - FLAM_C SINE Alu 0 143 14 266 178 0 0 chr12 6950324 6950369 -136836086 + FLAM_A SINE Alu 1 45 -88 2240 124 26 0 chr12 6950369 6950708 -136835747 - LTR10D LTR ERV1 0 513 166 1226 159 29 0 chr12 6950715 6950954 -136835501 - LTR10D LTR ERV1 -265 248 3 512 158 10 0 chr12 6950954 6951055 -136835400 + FLAM_A SINE Alu 39 140 -2 1814 132 33 50 chr12 6951062 6951365 -136835090 + AluJb SINE Alu 1 298 -14 3117 175 92 7 chr12 6951365 6952086 -136834369 + L1MC4a LINE L1 6838 7619 -189 2350 90 3 16 chr12 6952265 6952575 -136833880 - AluSq SINE Alu -7 306 1 236 51 0 51 chr12 6953180 6953219 -136833236 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2174 120 13 10 chr12 6954334 6954642 -136831813 - AluSq SINE Alu -4 309 1 2194 116 0 7 chr12 6954713 6955006 -136831449 + AluSq SINE Alu 1 291 -22 2431 48 41 10 chr12 6955013 6955307 -136831148 + AluY SINE Alu 1 303 -8 210 143 0 0 chr12 6955307 6955342 -136831113 + (CAGA)n Simple_repeat Simple_repeat 3 37 0 3510 241 69 19 chr12 6955342 6956274 -136830181 - L2 LINE L2 -248 3065 2069 1727 118 111 8 chr12 6956274 6956536 -136829919 + AluJb SINE Alu 2 290 -22 3510 241 69 19 chr12 6956536 6956723 -136829732 - L2 LINE L2 -1244 2069 1893 2339 105 0 3 chr12 6956723 6957028 -136829427 - AluSg SINE Alu -6 304 1 1855 157 42 0 chr12 6958208 6958494 -136827961 - AluJo SINE Alu -14 298 1 2313 121 0 13 chr12 6958923 6959229 -136827226 + AluSx SINE Alu 1 302 -10 2401 82 0 0 chr12 6959238 6959531 -136826924 + AluSg SINE Alu 4 296 -14 370 263 40 66 chr12 6961261 6961413 -136825042 + MIR3 SINE MIR 77 206 -2 2393 104 0 13 chr12 6961518 6961834 -136824621 - AluSx SINE Alu 0 312 1 2534 44 0 17 chr12 6961906 6962203 -136824252 - AluY SINE Alu -19 292 1 631 126 19 80 chr12 6962370 6962566 -136823889 - FRAM SINE Alu -18 158 1 319 248 67 29 chr12 6962605 6962710 -136823745 - L1MC4a LINE L1 -1839 5969 5861 1125 149 29 11 chr12 6962721 6962896 -136823559 + AluSg/x SINE Alu 118 295 -15 1892 176 0 23 chr12 6962905 6963206 -136823249 + AluSx SINE Alu 1 294 -18 231 125 0 0 chr12 6963206 6963246 -136823209 + (TA)n Simple_repeat Simple_repeat 1 40 0 879 187 0 32 chr12 6963262 6963417 -136823038 - AluJ SINE Alu -23 289 140 514 174 10 10 chr12 6963481 6963579 -136822876 - AluJ SINE Alu -149 163 66 1714 181 13 25 chr12 6964413 6964727 -136821728 + AluJb SINE Alu 1 310 -2 809 154 0 49 chr12 6965104 6965247 -136821208 - AluJ SINE Alu -176 136 1 1875 146 13 17 chr12 6965317 6965618 -136820837 + AluJo SINE Alu 1 300 -12 2307 114 0 3 chr12 6966403 6966709 -136819746 - AluSg SINE Alu -4 306 2 756 246 78 8 chr12 6966917 6967161 -136819294 - MIR SINE MIR 0 262 2 336 270 30 10 chr12 6967202 6967302 -136819153 - L2 LINE L2 -218 3054 2953 2305 93 3 29 chr12 6967372 6967685 -136818770 + AluSx SINE Alu 1 305 -7 503 282 109 15 chr12 6972090 6972292 -136814163 + MIR SINE MIR 23 243 -19 1158 141 39 0 chr12 6973202 6973408 -136813047 - L1MC1 LINE L1 -1 6332 6119 1160 153 124 0 chr12 6973413 6973654 -136812801 - L1MC1 LINE L1 -252 6081 5811 2275 95 7 0 chr12 6974537 6974833 -136811622 + AluSp SINE Alu 1 298 -15 1003 213 19 5 chr12 6975208 6975424 -136811031 + MER20 DNA MER1_type 1 219 0 303 296 80 45 chr12 6982076 6982197 -136804258 + MIR SINE MIR 47 179 -83 1978 124 3 7 chr12 6982197 6982479 -136803976 + AluSx SINE Alu 15 295 -17 303 296 80 45 chr12 6982479 6982556 -136803899 + MIR SINE MIR 179 252 -10 1538 115 74 0 chr12 6983822 6984039 -136802416 + AluSg SINE Alu 1 233 -77 271 253 36 12 chr12 6985262 6985345 -136801110 - HsTC2 DNA Tc2 -1813 85 1 3460 91 13 58 chr12 6986278 6986698 -136799757 + MER1A DNA MER1_type 1 392 -2308 2409 84 7 0 chr12 6986698 6986997 -136799458 + AluSp SINE Alu 1 301 -12 3460 91 13 58 chr12 6986997 6987128 -136799327 + MER1A DNA MER1_type 392 527 0 2202 113 3 10 chr12 6987179 6987480 -136798975 - AluSx SINE Alu -13 299 1 2507 48 0 3 chr12 6987944 6988266 -136798189 + AluY SINE Alu 1 311 0 4270 158 5 30 chr12 6988271 6988426 -136798029 + MER44D DNA MER2_type 7 164 -2323 2524 53 0 10 chr12 6988426 6988726 -136797729 + AluY SINE Alu 2 298 -13 4270 158 5 30 chr12 6988726 6989313 -136797142 + MER44D DNA MER2_type 164 603 -2 2544 48 0 19 chr12 6989491 6989800 -136796655 - AluY SINE Alu -8 303 1 431 227 21 50 chr12 6989998 6990139 -136796316 - MIR SINE MIR 0 262 126 1448 175 90 11 chr12 6990139 6990437 -136796018 + AluJo SINE Alu 1 312 0 1219 182 5 23 chr12 6990446 6990660 -136795795 + AluJo SINE Alu 1 210 -102 281 229 24 0 chr12 6990715 6990798 -136795657 + GA-rich Low_complexity Low_complexity 4 88 0 305 298 0 19 chr12 6990818 6990922 -136795533 - MIR SINE MIR -141 121 20 249 200 46 15 chr12 6992509 6992574 -136793881 + GA-rich Low_complexity Low_complexity 5 71 0 1130 148 79 30 chr12 6996582 6996785 -136789670 + AluJb SINE Alu 72 284 -28 23 68 0 0 chr12 6998525 6998569 -136787886 + GC_rich Low_complexity Low_complexity 1 44 0 28 0 0 0 chr12 6998859 6998887 -136787568 + GC_rich Low_complexity Low_complexity 1 28 0 2294 81 7 10 chr12 6999356 6999652 -136786803 - AluSx SINE Alu -17 295 1 2226 131 7 0 chr12 7000872 7001177 -136785278 + AluSx SINE Alu 1 307 -5 2230 103 27 0 chr12 7001284 7001576 -136784879 - AluSx SINE Alu -12 300 1 1068 119 0 7 chr12 7001612 7001763 -136784692 - AluJo SINE Alu -3 309 160 580 162 0 36 chr12 7001764 7001875 -136784580 - AluJo SINE Alu -204 108 2 1607 124 142 47 chr12 7001968 7002136 -136784319 - AluSx SINE Alu -10 302 97 2533 61 0 3 chr12 7002136 7002430 -136784025 - AluY SINE Alu -18 293 1 1607 124 142 47 chr12 7002430 7002535 -136783920 - AluSx SINE Alu -215 97 3 294 233 213 64 chr12 7004360 7004562 -136781893 - MIR SINE MIR -24 238 7 2292 93 3 10 chr12 7005000 7005300 -136781155 - AluSx SINE Alu -12 300 3 1236 99 0 6 chr12 7007143 7007305 -136779150 + AluSg/x SINE Alu 138 298 -12 2318 76 7 7 chr12 7007450 7007740 -136778715 - AluSx SINE Alu -22 290 1 1873 131 6 85 chr12 7008164 7008357 -136778098 - AluJo SINE Alu -9 303 145 2172 133 3 0 chr12 7008357 7008651 -136777804 - AluSx SINE Alu -17 295 1 1873 131 6 85 chr12 7008651 7008786 -136777669 - AluJo SINE Alu -167 145 1 1680 115 99 0 chr12 7009986 7010229 -136776226 - AluSq SINE Alu -14 299 33 187 367 10 0 chr12 7010233 7010331 -136776124 + MIR SINE MIR 150 248 -14 2290 76 41 0 chr12 7011663 7011954 -136774501 + AluSq SINE Alu 1 303 -10 2277 71 34 17 chr12 7011956 7012251 -136774204 + AluSc SINE Alu 1 300 -9 602 124 29 109 chr12 7012302 7012439 -136774016 - FLAM_C SINE Alu -7 126 1 276 241 241 9 chr12 7012780 7012896 -136773559 - MIR SINE MIR -57 205 63 2067 91 34 47 chr12 7014555 7014694 -136771761 + AluSp SINE Alu 1 140 -173 2375 84 3 3 chr12 7014694 7014991 -136771464 + AluSq SINE Alu 5 301 -12 2067 91 34 47 chr12 7014991 7015149 -136771306 + AluSp SINE Alu 140 294 -19 2234 118 10 0 chr12 7015158 7015455 -136771000 + AluSx SINE Alu 1 300 -12 669 159 0 110 chr12 7015461 7015576 -136770879 + FLAM_A SINE Alu 1 98 -204 2121 78 17 34 chr12 7015576 7015871 -136770584 - AluSg SINE Alu -20 290 1 669 159 0 110 chr12 7015871 7015900 -136770555 + FLAM_A SINE Alu 98 129 -173 2172 118 10 0 chr12 7016753 7017041 -136769414 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr12 7017054 7017082 -136769373 + AT_rich Low_complexity Low_complexity 1 28 0 296 388 55 0 chr12 7017239 7017494 -136768961 - L1ME3 LINE L1 -277 5885 5617 1361 222 54 13 chr12 7017860 7018175 -136768280 + MER58B DNA MER1_type 1 328 -13 2159 135 0 7 chr12 7018177 7018480 -136767975 + AluSx SINE Alu 1 301 -11 223 337 31 38 chr12 7018689 7018950 -136767505 + L2 LINE L2 2715 2973 -341 1032 154 178 65 chr12 7019061 7019092 -136767363 - AluJb SINE Alu -16 296 270 2281 99 0 0 chr12 7019092 7019386 -136767069 + AluSc SINE Alu 5 298 -11 1032 154 178 65 chr12 7019386 7019568 -136766887 - AluJb SINE Alu -42 270 59 817 83 9 0 chr12 7019617 7019726 -136766729 - AluSc SINE Alu -10 299 190 1091 151 0 0 chr12 7019953 7020112 -136766343 - AluSg/x SINE Alu -17 293 135 2044 141 13 10 chr12 7020148 7020454 -136766001 + AluSx SINE Alu 1 307 -5 1766 130 3 31 chr12 7022045 7022179 -136764276 + AluSx SINE Alu 2 138 -176 2141 83 66 21 chr12 7022179 7022314 -136764141 + AluSx SINE Alu 1 128 -184 2408 92 3 16 chr12 7022314 7022629 -136763826 + AluSx SINE Alu 1 311 -1 2141 83 66 21 chr12 7022629 7022782 -136763673 + AluSx SINE Alu 128 302 -10 2633 53 0 0 chr12 7022786 7023089 -136763366 + AluY SINE Alu 1 303 -8 1766 130 3 31 chr12 7023089 7023270 -136763185 + AluSx SINE Alu 141 314 0 2246 109 13 3 chr12 7023436 7023739 -136762716 + AluSp SINE Alu 1 306 -7 2064 139 7 0 chr12 7023739 7024040 -136762415 + AluSc SINE Alu 1 304 -5 1808 95 0 0 chr12 7024892 7025114 -136761341 - AluSq SINE Alu -91 222 1 238 210 0 0 chr12 7026982 7027044 -136759411 + L1ME LINE L1 5717 5778 -343 823 180 77 6 chr12 7027044 7027227 -136759228 - MER2 DNA MER2_type 0 345 150 217 254 51 0 chr12 7027242 7027301 -136759154 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 1638 169 59 0 chr12 7027422 7027695 -136758760 - AluJb SINE Alu -23 289 1 25 31 0 0 chr12 7027728 7027760 -136758695 + AT_rich Low_complexity Low_complexity 1 32 0 2301 74 7 0 chr12 7028309 7028593 -136757862 - AluY SINE Alu -25 286 1 1613 90 0 5 chr12 7028612 7028813 -136757642 + AluSg/x SINE Alu 94 293 -17 2168 122 0 7 chr12 7028827 7029121 -136757334 + AluSx SINE Alu 1 292 -20 2257 84 0 11 chr12 7029128 7029415 -136757040 + AluY SINE Alu 1 284 -27 198 91 0 0 chr12 7029415 7029448 -136757007 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1342 183 119 0 chr12 7029454 7029706 -136756749 + AluJo SINE Alu 1 282 -30 2150 136 3 0 chr12 7029706 7030007 -136756448 - AluSx SINE Alu -8 304 3 2267 114 0 7 chr12 7031507 7031806 -136754649 + AluSx SINE Alu 1 297 -15 1063 169 0 33 chr12 7031807 7031977 -136754478 + AluJo/FRAM SINE Alu 134 299 -13 1584 120 14 0 chr12 7031977 7032194 -136754261 + AluSq SINE Alu 1 220 -93 1063 169 0 33 chr12 7032194 7032207 -136754248 + AluJo/FRAM SINE Alu 299 311 -1 2398 216 59 32 chr12 7032211 7032498 -136753957 + L1MC4a LINE L1 7074 7352 -456 2389 94 0 0 chr12 7032498 7032796 -136753659 + AluSc SINE Alu 1 298 -11 2398 216 59 32 chr12 7032796 7032928 -136753527 + L1MC4a LINE L1 7352 7479 -329 2246 108 10 7 chr12 7032928 7033224 -136753231 + AluSx SINE Alu 1 297 -15 2398 216 59 32 chr12 7033224 7033519 -136752936 + L1MC4a LINE L1 7479 7808 0 1622 209 0 17 chr12 7033550 7033852 -136752603 + AluJo SINE Alu 3 299 -13 2590 71 0 3 chr12 7033854 7034163 -136752292 + AluSc SINE Alu 1 308 -1 184 250 0 0 chr12 7034187 7034227 -136752228 + MIR SINE MIR 63 102 -106 2295 79 3 0 chr12 7036855 7037146 -136749309 - AluSp SINE Alu -21 292 1 2234 82 0 50 chr12 7038501 7038820 -136747635 + AluSq SINE Alu 1 303 -10 1069 159 0 0 chr12 7038820 7038990 -136747465 + AluSc SINE Alu 132 301 -8 1797 109 7 63 chr12 7039379 7039529 -136746926 + AluSx SINE Alu 1 126 -185 2294 82 0 0 chr12 7039529 7039822 -136746633 + AluSx SINE Alu 1 293 -19 1797 109 7 63 chr12 7039822 7039999 -136746456 + AluSx SINE Alu 126 311 0 2050 103 22 22 chr12 7039999 7040310 -136746145 + AluY SINE Alu 1 311 0 750 260 0 0 chr12 7040331 7040485 -136745970 + FRAM SINE Alu 1 154 -12 2125 104 3 10 chr12 7040492 7040801 -136745654 + AluSx SINE Alu 1 307 -5 2203 91 0 3 chr12 7041540 7041837 -136744618 + AluSc SINE Alu 1 296 -13 403 134 30 0 chr12 7041886 7041953 -136744502 - MER46A DNA MER2_type 0 236 168 259 148 37 0 chr12 7041923 7041977 -136744478 + MER46A DNA MER2_type 99 154 -82 * 1403 194 0 48 chr12 7042166 7042480 -136743975 + AluJo SINE Alu 6 304 -8 198 0 0 0 chr12 7044990 7045012 -136741443 + (TCC)n Simple_repeat Simple_repeat 3 24 0 2109 105 14 0 chr12 7047010 7047305 -136739150 + AluSx SINE Alu 4 302 -10 241 268 32 16 chr12 7049676 7049799 -136736656 + (CGGGG)n Simple_repeat Simple_repeat 4 128 0 473 0 18 0 chr12 7050683 7050740 -136735715 + (CA)n Simple_repeat Simple_repeat 2 59 0 2165 112 3 0 chr12 7052747 7053050 -136733405 + AluSg SINE Alu 1 304 -6 1365 148 103 8 chr12 7053184 7053427 -136733028 - AluJb SINE Alu 0 312 47 2477 56 3 0 chr12 7053439 7053744 -136732711 - AluSp SINE Alu -7 306 1 208 153 0 34 chr12 7055956 7056015 -136730440 + C-rich Low_complexity Low_complexity 2 58 0 267 275 0 54 chr12 7057150 7057299 -136729156 + CT-rich Low_complexity Low_complexity 2 142 0 485 272 31 43 chr12 7057679 7057841 -136728614 - MIR SINE MIR -75 187 28 2147 118 0 0 chr12 7058131 7058436 -136728019 + AluSx SINE Alu 1 305 -7 464 82 0 0 chr12 7058441 7058502 -136727953 + Alu SINE Alu 2 62 -248 1225 186 8 35 chr12 7058624 7058882 -136727573 - AluSx SINE Alu -61 251 1 2070 123 16 0 chr12 7058895 7059203 -136727252 - AluSq SINE Alu 0 313 1 2193 116 0 3 chr12 7060411 7060722 -136725733 - AluSg SINE Alu 0 310 1 234 252 118 34 chr12 7060857 7060976 -136725479 - L3b LINE CR1 -146 1437 1309 2222 92 0 10 chr12 7061859 7062164 -136724291 - AluSq SINE Alu -11 302 1 1333 104 0 120 chr12 7062423 7062466 -136723989 + AluJo SINE Alu 85 132 -180 2145 98 0 0 chr12 7062466 7062752 -136723703 - AluSc SINE Alu -20 289 4 1333 104 0 120 chr12 7062752 7062783 -136723672 + AluJo SINE Alu 132 165 -147 1683 137 10 64 chr12 7062783 7063096 -136723359 + AluSx SINE Alu 1 296 -16 1333 104 0 120 chr12 7063096 7063257 -136723198 + AluJo SINE Alu 165 292 -20 2273 110 0 0 chr12 7063257 7063566 -136722889 + AluSg1 SINE Alu 1 309 0 1333 104 0 120 chr12 7063566 7063578 -136722877 + AluJo SINE Alu 292 304 -8 199 222 93 0 chr12 7063753 7063807 -136722648 - MIR3 SINE MIR -19 189 131 261 0 0 0 chr12 7064407 7064436 -136722019 + (GGCTG)n Simple_repeat Simple_repeat 5 33 0 283 227 147 0 chr12 7065105 7065180 -136721275 + MER103 DNA DNA 8 93 -73 259 195 85 24 chr12 7065188 7065270 -136721185 + L1MC5 LINE L1 7820 7906 -55 2077 99 0 11 chr12 7065395 7065701 -136720754 + AluSg SINE Alu 1 303 0 1744 159 0 3 chr12 7065800 7066090 -136720365 + AluJb SINE Alu 22 310 -2 254 327 73 42 chr12 7067005 7067170 -136719285 - MIR3 SINE MIR -21 187 18 315 253 0 13 chr12 7068218 7068297 -136718158 - MIR SINE MIR -101 107 30 546 301 52 16 chr12 7069117 7069366 -136717089 + L2 LINE L2 2127 2384 -930 665 299 33 29 chr12 7069366 7069607 -136716848 - MIR SINE MIR 0 262 21 754 146 31 23 chr12 7070218 7070348 -136716107 + FLAM_C SINE Alu 2 132 -11 311 313 27 33 chr12 7070358 7070508 -136715947 + L2 LINE L2 2915 3063 -209 471 77 0 44 chr12 7070729 7070820 -136715635 - L1M4 LINE L1 -1093 5053 4967 271 290 270 0 chr12 7070901 7071101 -136715354 - L1M4 LINE L1 -1160 4986 4733 1885 134 0 20 chr12 7071419 7071717 -136714738 + AluJo SINE Alu 1 292 -20 487 277 22 0 chr12 7072242 7072379 -136714076 - MIR3 SINE MIR -33 175 36 294 333 0 0 chr12 7072800 7072896 -136713559 + CT-rich Low_complexity Low_complexity 3 98 0 2516 59 0 0 chr12 7074103 7074409 -136712046 - AluY SINE Alu -5 306 1 2055 110 0 39 chr12 7074412 7074721 -136711734 - AluSx SINE Alu -15 297 1 2280 77 3 3 chr12 7076036 7076333 -136710122 - AluSc SINE Alu -12 297 1 1071 88 0 0 chr12 7076333 7076469 -136709986 - AluSq/x SINE Alu -176 136 1 422 285 83 7 chr12 7076470 7076614 -136709841 - MIR SINE MIR -48 214 60 1344 150 0 26 chr12 7076834 7077067 -136709388 + AluJb SINE Alu 85 311 -1 1757 133 7 18 chr12 7077082 7077402 -136709053 + AluJb SINE Alu 1 317 0 716 142 0 0 chr12 7077406 7077512 -136708943 + AluSq/x SINE Alu 3 108 -204 2246 99 3 0 chr12 7077514 7077818 -136708637 + AluY SINE Alu 1 305 -6 1363 139 102 16 chr12 7077952 7078196 -136708259 - AluJb SINE Alu -1 311 47 2434 56 7 0 chr12 7078208 7078512 -136707943 - AluSp SINE Alu -7 306 1 208 153 0 34 chr12 7080723 7080782 -136705673 + C-rich Low_complexity Low_complexity 2 58 0 267 275 0 54 chr12 7081917 7082066 -136704389 + CT-rich Low_complexity Low_complexity 2 142 0 485 272 31 43 chr12 7082446 7082608 -136703847 - MIR SINE MIR -75 187 28 2147 118 0 0 chr12 7082898 7083203 -136703252 + AluSx SINE Alu 1 305 -7 2128 106 0 7 chr12 7083207 7083510 -136702945 + AluSc SINE Alu 1 301 -8 222 314 161 17 chr12 7084045 7084250 -136702205 + MIR SINE MIR 20 248 -14 2321 85 3 0 chr12 7084260 7084565 -136701890 + AluSq SINE Alu 1 306 -7 204 280 51 108 chr12 7084827 7084984 -136701471 + L2 LINE L2 2568 2715 -599 749 167 19 119 chr12 7085133 7085343 -136701112 - L2 LINE L2 -1 3312 3124 281 158 12 0 chr12 7085773 7085855 -136700600 + (CA)n Simple_repeat Simple_repeat 2 84 0 2060 112 17 3 chr12 7086025 7086321 -136700134 + AluSx SINE Alu 1 300 -12 979 145 103 33 chr12 7086731 7086945 -136699510 + Charlie1 DNA MER1_type 5 233 -2528 512 136 104 0 chr12 7086935 7087060 -136699395 + Charlie1 DNA MER1_type 2620 2757 -4 * 358 57 80 11 chr12 7087102 7087190 -136699265 + GA-rich Low_complexity Low_complexity 1 94 0 251 266 18 83 chr12 7089379 7089488 -136696967 + MIR SINE MIR 1 102 -160 1514 168 6 78 chr12 7089493 7089624 -136696831 + AluJb SINE Alu 1 140 -172 2272 102 0 0 chr12 7089624 7089919 -136696536 + AluSq SINE Alu 1 295 -18 2339 85 0 13 chr12 7089920 7090236 -136696219 + AluSq SINE Alu 1 312 -1 2054 101 29 16 chr12 7090245 7090552 -136695903 + AluSx SINE Alu 1 311 -1 1514 168 6 78 chr12 7090552 7090729 -136695726 + AluJb SINE Alu 148 298 -14 2084 119 7 0 chr12 7090736 7091029 -136695426 + AluSx SINE Alu 1 295 -17 1893 182 0 0 chr12 7091036 7091338 -136695117 + AluSx SINE Alu 7 308 -4 302 277 139 7 chr12 7091407 7091544 -136694911 - L2 LINE L2 -1 3312 3158 842 133 7 0 chr12 7091627 7091762 -136694693 + AluSg/x SINE Alu 171 306 -6 292 164 0 33 chr12 7091872 7091933 -136694522 + MIR SINE MIR 119 177 -85 183 42 0 0 chr12 7092087 7092111 -136694344 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1755 154 54 42 chr12 7092119 7092384 -136694071 - L1MB4 LINE L1 -87 6093 5820 2354 76 3 10 chr12 7092384 7092698 -136693757 - AluSp SINE Alu -1 312 1 1755 154 54 42 chr12 7092698 7092841 -136693614 - L1MB4 LINE L1 -360 5820 5680 2354 64 14 0 chr12 7092922 7093217 -136693238 + AluY SINE Alu 1 299 -12 2184 88 10 7 chr12 7093218 7093515 -136692940 + AluY SINE Alu 1 298 -13 1591 186 9 40 chr12 7093567 7093764 -136692691 - AluJo SINE Alu 0 312 127 2155 103 0 17 chr12 7093764 7094065 -136692390 + AluSx SINE Alu 1 296 -16 1591 186 9 40 chr12 7094065 7094189 -136692266 - AluJo SINE Alu -185 127 1 482 325 55 65 chr12 7094376 7094761 -136691694 + L2 LINE L2 2837 3217 -55 656 170 0 0 chr12 7094978 7095084 -136691371 + AluSg/x SINE Alu 193 298 -14 2173 88 10 3 chr12 7095086 7095382 -136691073 + AluSq SINE Alu 1 298 -15 2389 81 0 0 chr12 7095786 7096096 -136690359 - AluY SINE Alu -1 310 1 1916 113 0 31 chr12 7096223 7096403 -136690052 - AluSx SINE Alu -3 309 140 2370 79 3 3 chr12 7096403 7096708 -136689747 - AluSp SINE Alu -8 305 1 1916 113 0 31 chr12 7096708 7096819 -136689636 - AluSx SINE Alu -172 140 27 244 54 27 0 chr12 7096939 7096976 -136689479 - AluSx SINE Alu -262 38 1 690 252 40 17 chr12 7096993 7097180 -136689275 + L1MEc LINE L1 2315 2470 -3745 1995 107 47 10 chr12 7097180 7097478 -136688977 + AluSx SINE Alu 1 309 -3 690 252 40 17 chr12 7097478 7097570 -136688885 + L1MEc LINE L1 2470 2558 -3657 1560 115 0 5 chr12 7097570 7097787 -136688668 + AluSx SINE Alu 1 216 -96 4536 61 3 12 chr12 7097787 7098429 -136688026 + LTR13 LTR ERVK 372 1007 0 1276 199 127 8 chr12 7098442 7098709 -136687746 - AluJo SINE Alu -2 300 2 227 248 120 86 chr12 7098779 7098896 -136687559 + MIR3 SINE MIR 47 167 -41 198 238 48 48 chr12 7098970 7099033 -136687422 + L3 LINE CR1 1502 1564 -13 2369 121 30 30 chr12 7099225 7099589 -136686866 + THE1B LTR MaLR 1 364 0 2253 73 0 30 chr12 7099634 7099934 -136686521 - AluY SINE Alu -17 294 4 2194 99 10 0 chr12 7100349 7100643 -136685812 + AluSx SINE Alu 1 297 -15 260 296 68 38 chr12 7101677 7101809 -136684646 - MIR3 SINE MIR -64 144 9 330 204 93 37 chr12 7102393 7102501 -136683954 - MIR3 SINE MIR -82 126 13 2090 108 30 0 chr12 7102591 7102886 -136683569 + AluSx SINE Alu 1 304 -8 2136 96 0 45 chr12 7105328 7105641 -136680814 + AluSg SINE Alu 1 299 -11 1523 105 113 4 chr12 7107113 7107352 -136679103 - AluSx SINE Alu -9 303 39 2157 118 7 0 chr12 7110670 7110976 -136675479 + AluSg SINE Alu 1 308 -2 1053 135 35 6 chr12 7110976 7111146 -136675309 + AluSg/x SINE Alu 132 306 -4 809 129 0 24 chr12 7111309 7111433 -136675022 - AluJb SINE Alu -191 121 1 2187 97 3 34 chr12 7111510 7111831 -136674624 + AluSx SINE Alu 1 311 -1 1717 145 99 0 chr12 7111836 7112118 -136674337 + AluJo SINE Alu 1 310 -2 209 200 11 53 chr12 7112270 7112365 -136674090 + CT-rich Low_complexity Low_complexity 1 91 0 2456 50 13 3 chr12 7112365 7112665 -136673790 - AluY SINE Alu -8 303 1 304 354 130 5 chr12 7112666 7112760 -136673695 - HAL1 LINE L1 -1218 1289 1208 2108 112 16 16 chr12 7112760 7113072 -136673383 - AluSp SINE Alu -1 312 1 304 354 130 5 chr12 7113072 7113169 -136673286 - HAL1 LINE L1 -1299 1208 1074 246 95 0 0 chr12 7113667 7113709 -136672746 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 461 227 63 66 chr12 7113711 7113963 -136672492 - L2 LINE L2 -14 3258 2938 1015 95 0 7 chr12 7113963 7114100 -136672355 + AluJb SINE Alu 1 136 -176 2244 81 3 32 chr12 7114100 7114410 -136672045 + AluY SINE Alu 1 301 -10 1312 217 195 49 chr12 7114414 7114866 -136671589 - L2 LINE L2 -366 2948 2431 1514 127 26 138 chr12 7115167 7115514 -136670941 + AluYb8 SINE Alu 1 308 0 219 284 45 11 chr12 7115533 7115621 -136670834 - L2 LINE L2 -454 2860 2770 185 324 14 14 chr12 7115665 7115736 -136670719 - L2 LINE L2 -1 3271 3201 197 338 44 66 chr12 7115937 7116165 -136670290 - L2 LINE L2 -940 2374 2152 1112 109 65 45 chr12 7116531 7116589 -136669866 - MER3 DNA MER1_type -4 205 150 2200 79 0 4 chr12 7116589 7116890 -136669565 + AluSc SINE Alu 1 300 0 1112 109 65 45 chr12 7116890 7116902 -136669553 - MER3 DNA MER1_type -59 150 140 2051 101 3 41 chr12 7116902 7117238 -136669217 + AluSx SINE Alu 1 312 0 1112 109 65 45 chr12 7117238 7117366 -136669089 - MER3 DNA MER1_type -69 140 1 2100 128 0 0 chr12 7117513 7117811 -136668644 + AluSg SINE Alu 1 298 -12 1585 155 61 4 chr12 7117880 7118157 -136668298 + AluJb SINE Alu 8 300 -12 2093 133 3 0 chr12 7118717 7119019 -136667436 + AluSx SINE Alu 1 303 -9 234 298 6 37 chr12 7120505 7120666 -136665789 + GA-rich Low_complexity Low_complexity 5 160 0 21 36 0 0 chr12 7120916 7120944 -136665511 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 64 chr12 7122105 7122183 -136664272 + C-rich Low_complexity Low_complexity 1 73 0 258 105 0 0 chr12 7122470 7122508 -136663947 + (CCG)n Simple_repeat Simple_repeat 3 40 0 26 64 0 0 chr12 7122557 7122604 -136663851 + GC_rich Low_complexity Low_complexity 1 47 0 30 97 0 0 chr12 7122655 7122748 -136663707 + GC_rich Low_complexity Low_complexity 1 93 0 23 0 0 0 chr12 7123497 7123520 -136662935 + GC_rich Low_complexity Low_complexity 1 23 0 213 324 0 0 chr12 7125512 7125580 -136660875 + GA-rich Low_complexity Low_complexity 1 68 0 335 287 10 0 chr12 7125823 7125924 -136660531 + GA-rich Low_complexity Low_complexity 3 104 0 386 224 197 14 chr12 7127740 7127887 -136658568 + MIR SINE MIR 86 259 -3 180 273 109 0 chr12 7132382 7132437 -136654018 - MIR SINE MIR -162 100 40 804 161 0 22 chr12 7132864 7133001 -136653454 + AluJb SINE Alu 1 134 -178 370 250 76 18 chr12 7133537 7133675 -136652780 + MIR SINE MIR 45 200 -8 237 313 0 0 chr12 7134075 7134142 -136652313 + CT-rich Low_complexity Low_complexity 2 68 0 201 132 0 0 chr12 7134519 7134557 -136651898 + (TC)n Simple_repeat Simple_repeat 1 38 0 381 131 0 0 chr12 7134785 7134846 -136651609 + (CA)n Simple_repeat Simple_repeat 1 61 0 397 213 159 8 chr12 7135334 7135474 -136650981 + MIR SINE MIR 34 191 -63 1980 169 0 7 chr12 7136209 7136511 -136649944 + AluJb SINE Alu 1 300 -12 242 169 0 68 chr12 7137159 7137218 -136649237 - MLT1F LTR MaLR -6 536 482 663 202 0 0 chr12 7137218 7137337 -136649118 + AluJo SINE Alu 1 119 -193 1413 96 0 0 chr12 7137337 7137514 -136648941 - AluSg/x SINE Alu -15 297 121 23 0 0 0 chr12 7137515 7137538 -136648917 + AT_rich Low_complexity Low_complexity 1 23 0 2247 82 0 14 chr12 7137538 7137831 -136648624 - AluY SINE Alu -22 289 1 918 235 0 0 chr12 7137852 7138039 -136648416 + AluJo SINE Alu 124 310 -2 1343 280 88 23 chr12 7138040 7138483 -136647972 - MLT1F LTR MaLR -68 474 3 212 261 120 43 chr12 7139501 7139593 -136646862 + MIR SINE MIR 118 216 -46 1970 161 0 27 chr12 7139737 7140066 -136646389 - 7SLRNA srpRNA srpRNA 0 320 1 1051 99 0 0 chr12 7140105 7140236 -136646219 - AluY SINE Alu -180 131 1 446 237 40 76 chr12 7140291 7140375 -136646080 + MIR SINE MIR 33 118 -144 1742 186 3 7 chr12 7140375 7140671 -136645784 + AluJo SINE Alu 1 295 -17 446 237 40 76 chr12 7140671 7140784 -136645671 + MIR SINE MIR 118 223 -39 2453 93 0 0 chr12 7141345 7141657 -136644798 + AluSx SINE Alu 1 312 0 780 174 82 51 chr12 7141672 7141820 -136644635 + L1MB3 LINE L1 5978 6135 -48 2443 96 0 0 chr12 7141820 7142121 -136644334 + AluSx SINE Alu 1 301 -11 780 174 82 51 chr12 7142121 7142167 -136644288 + L1MB3 LINE L1 6135 6178 -5 21 36 0 0 chr12 7142167 7142195 -136644260 + AT_rich Low_complexity Low_complexity 1 28 0 276 274 53 11 chr12 7142202 7142297 -136644158 - L2 LINE L2 -8 3264 3166 665 259 30 35 chr12 7142411 7142643 -136643812 + MLT1J LTR MaLR 279 509 -2 301 286 179 12 chr12 7142703 7142871 -136643584 + L2 LINE L2 3117 3312 -1 239 321 62 27 chr12 7142872 7142984 -136643471 - MER102b DNA MER1_type 0 341 226 * 800 281 58 8 chr12 7142957 7143199 -136643256 - MLT1J LTR MaLR -242 269 16 1402 154 27 64 chr12 7143243 7143541 -136642914 + Charlie1a DNA MER1_type 1 287 -1168 572 252 25 33 chr12 7143542 7143784 -136642671 + AluSq SINE Alu 2 241 -72 2341 93 16 19 chr12 7144692 7144866 -136641589 - AluSx SINE Alu 0 312 138 2233 124 0 3 chr12 7144866 7145173 -136641282 - AluSg SINE Alu -4 306 1 2341 93 16 19 chr12 7145173 7145311 -136641144 - AluSx SINE Alu -174 138 1 211 189 38 19 chr12 7145338 7145391 -136641064 - MIR3 SINE MIR -31 177 124 195 100 0 0 chr12 7146082 7146112 -136640343 + (A)n Simple_repeat Simple_repeat 1 30 0 195 69 0 0 chr12 7146254 7146283 -136640172 + (TA)n Simple_repeat Simple_repeat 2 30 0 393 22 0 0 chr12 7147346 7147392 -136639063 + (CTG)n Simple_repeat Simple_repeat 1 46 0 225 279 0 0 chr12 7147404 7147472 -136638983 + (CTGGGG)n Simple_repeat Simple_repeat 2 69 0 215 146 0 24 chr12 7147471 7147512 -136638943 + (CTG)n Simple_repeat Simple_repeat 1 40 0 * 2300 118 0 16 chr12 7147865 7148180 -136638275 + AluSx SINE Alu 1 310 -2 419 254 25 51 chr12 7148865 7148943 -136637512 + Charlie1b DNA MER1_type 1 77 -1378 2198 106 3 16 chr12 7148943 7149246 -136637209 - AluSx SINE Alu -13 299 1 419 254 25 51 chr12 7149246 7149285 -136637170 + Charlie1b DNA MER1_type 77 115 -1340 468 167 71 0 chr12 7149285 7149369 -136637086 + AluSg/x SINE Alu 193 282 -27 237 159 0 0 chr12 7149369 7149413 -136637042 + (CA)n Simple_repeat Simple_repeat 1 44 0 1162 171 115 67 chr12 7149494 7149591 -136636864 + Charlie1b DNA MER1_type 149 240 -2521 1740 178 7 3 chr12 7149591 7149883 -136636572 + AluJo SINE Alu 2 294 -18 1162 171 115 67 chr12 7149883 7150141 -136636314 + Charlie1b DNA MER1_type 240 521 -2 295 346 0 0 chr12 7153016 7153097 -136633358 + L2 LINE L2 3191 3271 -1 202 262 252 37 chr12 7154105 7154212 -136632243 + MIR SINE MIR 21 150 -58 23 0 0 0 chr12 7154530 7154553 -136631902 + AT_rich Low_complexity Low_complexity 1 23 0 360 300 132 11 chr12 7154674 7154864 -136631591 - MIR SINE MIR -1 261 49 249 254 36 0 chr12 7154867 7154922 -136631533 + L3 LINE CR1 1432 1488 -89 2307 81 7 10 chr12 7155463 7155758 -136630697 + AluSx SINE Alu 2 295 -17 564 238 37 6 chr12 7156493 7156657 -136629798 - MIR SINE MIR -45 217 49 420 235 35 35 chr12 7158173 7158288 -136628167 + L2 LINE L2 3193 3307 -6 1589 178 63 14 chr12 7159422 7159709 -136626746 - AluJb SINE Alu -11 301 1 2233 114 7 0 chr12 7159811 7160108 -136626347 + AluSq SINE Alu 1 299 -14 2279 88 27 7 chr12 7160379 7160674 -136625781 + AluSq SINE Alu 1 301 -12 1274 201 10 102 chr12 7161454 7161758 -136624697 + AluJo SINE Alu 1 276 -36 513 0 0 0 chr12 7161764 7161821 -136624634 + (CAAAA)n Simple_repeat Simple_repeat 1 57 0 1574 183 67 0 chr12 7161829 7162114 -136624341 + AluJb SINE Alu 9 312 0 2168 105 7 0 chr12 7162457 7162768 -136623687 + AluSx SINE Alu 5 317 0 1870 156 57 0 chr12 7162840 7163123 -136623332 + AluSx SINE Alu 1 299 -13 2181 127 0 0 chr12 7163174 7163465 -136622990 + AluSg SINE Alu 1 291 -19 633 203 198 6 chr12 7163489 7163671 -136622784 - MIR SINE MIR -1 261 45 236 121 0 0 chr12 7164262 7164295 -136622160 - MER91 DNA MER1_type -72 68 36 1889 146 0 0 chr12 7164515 7164795 -136621660 + AluJo SINE Alu 33 312 0 2202 108 6 19 chr12 7164942 7165256 -136621199 + AluSx SINE Alu 2 311 -1 2265 122 0 0 chr12 7165711 7166005 -136620450 - AluSx SINE Alu -18 294 1 341 267 219 0 chr12 7169538 7169725 -136616730 + L2 LINE L2 3085 3312 -1 2280 93 3 3 chr12 7170071 7170371 -136616084 - AluSq SINE Alu -12 301 2 200 228 43 57 chr12 7170375 7170485 -136615970 - MIR SINE MIR -63 145 65 1133 93 0 0 chr12 7170860 7171000 -136615455 + AluSp/q SINE Alu 164 303 -10 22 0 0 0 chr12 7171659 7171681 -136614774 + AT_rich Low_complexity Low_complexity 1 22 0 371 270 20 53 chr12 7173363 7173515 -136612940 + GA-rich Low_complexity Low_complexity 5 151 0 185 258 76 0 chr12 7176402 7176468 -136609987 + L2 LINE L2 2993 3063 -209 264 193 241 0 chr12 7176560 7176643 -136609812 + L2 LINE L2 3133 3235 -37 2347 109 0 0 chr12 7178417 7178719 -136607736 + AluSq SINE Alu 1 302 -11 257 312 5 58 chr12 7178989 7179178 -136607277 + GA-rich Low_complexity Low_complexity 2 180 0 265 229 0 43 chr12 7179305 7179375 -136607080 + GA-rich Low_complexity Low_complexity 4 70 0 227 206 8 71 chr12 7180108 7180234 -136606221 + (CGGGG)n Simple_repeat Simple_repeat 3 120 0 324 64 0 0 chr12 7180242 7180289 -136606166 + (CTCGG)n Simple_repeat Simple_repeat 5 51 0 852 125 0 29 chr12 7180563 7180699 -136605756 - FLAM_C SINE Alu -11 132 1 497 301 75 45 chr12 7180894 7181251 -136605204 + L2 LINE L2 2771 3134 -179 * 2054 251 113 22 chr12 7181235 7181955 -136604500 + L2 LINE L2 2005 2789 -525 938 137 0 0 chr12 7182061 7182192 -136604263 - AluSg/x SINE Alu -16 294 164 1116 113 0 7 chr12 7182251 7182402 -136604053 - AluSq/x SINE Alu -162 150 1 2358 108 0 0 chr12 7182548 7182855 -136603600 - AluSq SINE Alu -6 307 1 283 286 41 20 chr12 7182932 7183030 -136603425 + L2 LINE L2 3168 3267 -5 1240 119 8 128 chr12 7183623 7183866 -136602589 - AluJb SINE Alu -16 296 83 351 250 22 0 chr12 7183898 7183990 -136602465 - L2 LINE L2 -41 3231 3138 917 141 0 0 chr12 7184129 7184257 -136602198 - FLAM_C SINE Alu -13 130 3 767 237 212 49 chr12 7184279 7184521 -136601934 + L2 LINE L2 1329 1530 -1784 2672 24 7 0 chr12 7184521 7184817 -136601638 - AluY SINE Alu -13 298 1 767 237 212 49 chr12 7184817 7185022 -136601433 + L2 LINE L2 1530 1849 -1465 381 75 0 0 chr12 7185035 7185088 -136601367 - AluY SINE Alu -3 297 245 1526 66 0 6 chr12 7185088 7185270 -136601185 - AluY SINE Alu -130 181 1 1653 146 3 65 chr12 7185291 7185554 -136600901 - AluJo SINE Alu -11 301 60 2460 80 7 0 chr12 7185554 7185855 -136600600 - AluSc SINE Alu -6 303 1 1653 146 3 65 chr12 7185855 7185912 -136600543 - AluJo SINE Alu -252 60 1 2374 109 3 0 chr12 7185919 7186230 -136600225 - AluSx SINE Alu 0 312 1 2125 119 10 0 chr12 7186232 7186526 -136599929 - AluSq SINE Alu -16 297 1 2271 109 0 6 chr12 7186794 7187106 -136599349 + AluY SINE Alu 1 310 -1 383 140 0 0 chr12 7187115 7187172 -136599283 + AluS SINE Alu 1 57 -251 1303 88 26 5 chr12 7187192 7187385 -136599070 + LTR3b LTR ERVK 304 500 0 1473 178 0 20 chr12 7187386 7187639 -136598816 + AluJb SINE Alu 50 297 -15 643 153 0 0 chr12 7187689 7187800 -136598655 - AluSx SINE Alu -2 307 197 944 76 30 15 chr12 7187800 7187932 -136598523 - AluSx SINE Alu -175 138 5 2425 75 20 7 chr12 7187952 7188258 -136598197 - AluY SINE Alu -1 310 1 1140 106 0 19 chr12 7188258 7188410 -136598045 - AluSq SINE Alu -16 297 147 6830 154 196 20 chr12 7188410 7189851 -136596604 + pTR5 LTR ERV1 743 2437 -1 540 152 0 50 chr12 7189851 7189872 -136596583 - AluSg SINE Alu -158 152 131 2011 138 14 3 chr12 7189872 7190169 -136596286 - AluSq SINE Alu -13 300 1 540 152 0 50 chr12 7190169 7190246 -136596209 - AluSg SINE Alu -179 131 59 1040 128 27 0 chr12 7190258 7190406 -136596049 - AluSx SINE Alu -159 153 2 653 145 8 0 chr12 7190433 7190550 -136595905 - FLAM_A SINE Alu 0 142 25 405 297 14 0 chr12 7190551 7190696 -136595759 - L1M4 LINE L1 -2449 3697 3551 2073 119 24 0 chr12 7190742 7191035 -136595420 + AluSq SINE Alu 1 300 -13 2426 99 0 0 chr12 7191040 7191343 -136595112 + AluSx SINE Alu 1 303 -9 2337 93 0 7 chr12 7191348 7191650 -136594805 + AluY SINE Alu 1 300 -11 1217 119 11 0 chr12 7191651 7191828 -136594627 + AluSg/x SINE Alu 134 312 0 675 158 9 0 chr12 7191854 7191968 -136594487 - FLAM_C SINE Alu -15 118 4 1371 264 135 17 chr12 7191973 7192062 -136594393 + L2 LINE L2 2453 2530 -783 2142 133 3 0 chr12 7192062 7192356 -136594099 + AluSx SINE Alu 1 295 -17 222 37 0 0 chr12 7192357 7192384 -136594071 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1371 264 135 17 chr12 7192384 7192968 -136593487 + L2 LINE L2 2529 3227 -86 186 250 143 0 chr12 7193106 7193162 -136593293 + L2 LINE L2 3209 3272 0 343 275 22 33 chr12 7193237 7193419 -136593036 + CT-rich Low_complexity Low_complexity 1 180 0 301 363 112 6 chr12 7193420 7193599 -136592856 - MIR3 SINE MIR -5 203 6 2105 138 0 40 chr12 7193627 7193952 -136592503 - AluSx SINE Alu 0 312 1 2058 133 0 37 chr12 7193959 7194283 -136592172 - AluSx SINE Alu 0 312 1 338 333 82 7 chr12 7194307 7194454 -136592001 + MIR SINE MIR 34 191 -71 2241 109 7 0 chr12 7194468 7194770 -136591685 + AluSg SINE Alu 1 304 -6 619 111 0 0 chr12 7194779 7194878 -136591577 + AluJ/FRAM SINE Alu 214 312 0 2668 46 3 0 chr12 7194988 7195294 -136591161 + AluY SINE Alu 1 307 -4 213 257 40 14 chr12 7195396 7195470 -136590985 + CT-rich Low_complexity Low_complexity 3 78 0 250 224 188 0 chr12 7195609 7195694 -136590761 + MIR SINE MIR 96 196 -66 198 294 0 0 chr12 7195864 7195915 -136590540 + MIR SINE MIR 95 145 -63 218 197 158 0 chr12 7196039 7196115 -136590340 + MIR SINE MIR 175 262 0 202 261 82 91 chr12 7197593 7197713 -136588742 + MIR3 SINE MIR 14 143 -119 2485 79 0 3 chr12 7197713 7198018 -136588437 - AluY SINE Alu -7 304 1 202 261 82 91 chr12 7198018 7198106 -136588349 + MIR3 SINE MIR 143 230 -32 1069 183 134 15 chr12 7198470 7198594 -136587861 + AluSx SINE Alu 1 109 -193 2040 97 93 0 chr12 7198594 7198873 -136587582 + AluY SINE Alu 1 305 -6 2211 96 0 26 chr12 7198876 7199204 -136587251 + AluSg SINE Alu 1 310 0 1069 183 134 15 chr12 7199204 7199343 -136587112 + AluSx SINE Alu 110 300 -2 211 320 40 30 chr12 7199381 7199481 -136586974 - L2 LINE L2 -61 3252 3152 2469 93 0 0 chr12 7199619 7199921 -136586534 + AluSx SINE Alu 1 302 -10 1550 190 4 7 chr12 7202607 7202881 -136583574 - AluJo SINE Alu -39 273 1 222 37 0 0 chr12 7203525 7203552 -136582903 + (TC)n Simple_repeat Simple_repeat 2 28 0 1972 119 42 7 chr12 7204623 7204909 -136581546 + AluSx SINE Alu 1 296 -16 2390 75 3 3 chr12 7204909 7205202 -136581253 + AluY SINE Alu 1 293 -18 2378 95 0 0 chr12 7205662 7205958 -136580497 + AluSc SINE Alu 1 296 -13 2034 41 0 12 chr12 7206071 7206313 -136580142 + AluY SINE Alu 63 301 -10 3144 185 31 52 chr12 7206316 7207078 -136579377 + LTR5 LTR ERVK 224 969 0 896 126 81 17 chr12 7207296 7207470 -136578985 + MER5A DNA MER1_type 2 186 -3 538 186 10 0 chr12 7207623 7207725 -136578730 - FRAM SINE Alu -18 158 56 568 263 154 54 chr12 7208536 7208977 -136577478 + LTR33 LTR ERVL 22 506 -15 670 98 9 53 chr12 7209153 7209378 -136577077 + (TAGA)n Simple_repeat Simple_repeat 1 215 0 2178 113 7 10 chr12 7209395 7209705 -136576750 + AluSx SINE Alu 1 309 -3 232 125 10 77 chr12 7209714 7209809 -136576646 + (TAGA)n Simple_repeat Simple_repeat 2 91 -7 2459 88 0 0 chr12 7209809 7210103 -136576352 + AluSx SINE Alu 1 294 -18 232 125 10 77 chr12 7210103 7210111 -136576344 + (TAGA)n Simple_repeat Simple_repeat 91 98 0 2219 92 28 0 chr12 7210116 7210400 -136576055 + AluSx SINE Alu 3 294 -18 648 41 41 33 chr12 7210400 7210522 -136575933 + (TAGA)n Simple_repeat Simple_repeat 2 124 0 404 114 4 15 chr12 7210530 7210775 -136575680 + AluSq SINE Alu 2 293 -19 572 0 15 0 chr12 7210775 7210843 -136575612 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 231 88 0 0 chr12 7211490 7211524 -136574931 + (TC)n Simple_repeat Simple_repeat 1 34 0 1874 153 7 3 chr12 7212594 7212882 -136573573 - AluJb SINE Alu -23 289 1 239 163 0 0 chr12 7212894 7212937 -136573518 - L2 LINE L2 -5 3308 3266 2223 125 0 0 chr12 7212938 7213243 -136573212 + AluSx SINE Alu 1 305 -7 229 312 14 36 chr12 7214311 7214449 -136572006 + T-rich Low_complexity Low_complexity 4 138 0 244 277 59 30 chr12 7214568 7214669 -136571786 - L2 LINE L2 -26 3246 3143 670 300 22 48 chr12 7215456 7215869 -136570586 + L2 LINE L2 2246 2647 -667 1056 195 0 0 chr12 7215939 7216113 -136570342 + AluJb SINE Alu 137 310 -2 638 184 137 12 chr12 7216120 7216288 -136570167 - Charlie1 DNA MER1_type -995 1766 1578 2085 108 31 3 chr12 7216323 7216609 -136569846 - AluSp SINE Alu -19 294 1 1086 244 137 57 chr12 7217319 7217815 -136568640 - MLT1E LTR MaLR -6 587 1 306 310 0 50 chr12 7217822 7217922 -136568533 + MER5A DNA MER1_type 21 115 -74 283 317 0 39 chr12 7217836 7217940 -136568515 - MER5A DNA MER1_type -23 166 67 * 307 348 65 0 chr12 7218193 7218331 -136568124 - L2 LINE L2 -209 3063 2917 431 165 0 0 chr12 7218445 7218524 -136567931 - AluJ/FRAM SINE Alu -3 309 231 603 234 128 87 chr12 7218730 7219144 -136567311 + L1MDb LINE L1 889 1319 -5224 2291 120 0 10 chr12 7219154 7219463 -136566992 + AluSq SINE Alu 1 306 -7 256 214 114 0 chr12 7219464 7219534 -136566921 + L1MDb LINE L1 1590 1667 -4873 1161 127 6 6 chr12 7219544 7219709 -136566746 + AluSg/x SINE Alu 133 297 -13 1277 267 99 8 chr12 7219709 7220215 -136566240 + L1MDb LINE L1 1672 2223 -4317 2286 101 3 0 chr12 7220226 7220522 -136565933 + AluSq SINE Alu 1 297 -16 1916 164 0 13 chr12 7220533 7220831 -136565624 + AluJb SINE Alu 1 294 -18 228 250 96 0 chr12 7220946 7221050 -136565405 + L1MDb LINE L1 2235 2348 -4192 1002 231 9 14 chr12 7221051 7221267 -136565188 + MER58A DNA MER1_type 2 216 -8 1566 163 0 0 chr12 7221267 7221512 -136564943 + AluSg SINE Alu 1 245 -65 400 156 36 66 chr12 7221516 7221542 -136564913 + L1MDb LINE L1 2342 2367 -4173 2219 77 0 68 chr12 7221542 7221676 -136564779 + AluSc SINE Alu 1 143 -166 2566 28 0 56 chr12 7221676 7221997 -136564458 + AluY SINE Alu 1 303 -8 2219 77 0 68 chr12 7221997 7222185 -136564270 + AluSc SINE Alu 143 301 -8 2510 68 0 0 chr12 7222185 7222492 -136563963 + AluY SINE Alu 1 307 -4 400 156 36 66 chr12 7222492 7222631 -136563824 + L1MDb LINE L1 2365 2503 -4037 2355 86 26 3 chr12 7222644 7222947 -136563508 + AluY SINE Alu 2 311 0 227 152 0 0 chr12 7222997 7223043 -136563412 - Alu SINE Alu 0 303 258 23 33 0 0 chr12 7223189 7223219 -136563236 + AT_rich Low_complexity Low_complexity 1 30 0 2158 110 10 0 chr12 7223230 7223521 -136562934 + AluSc SINE Alu 5 298 -11 2268 129 0 0 chr12 7224792 7225095 -136561360 - AluSx SINE Alu -9 303 1 2229 113 0 26 chr12 7225102 7225413 -136561042 - AluSx SINE Alu -9 303 1 1547 149 108 11 chr12 7227122 7227390 -136559065 - AluJb SINE Alu -18 294 1 307 196 9 103 chr12 7227397 7227504 -136558951 - FLAM_A SINE Alu -8 125 29 1775 147 13 42 chr12 7227579 7227891 -136558564 - AluJb SINE Alu -9 303 1 2206 119 0 0 chr12 7227984 7228278 -136558177 - AluSx SINE Alu -18 294 1 2303 123 0 0 chr12 7228287 7228597 -136557858 - AluSx SINE Alu -2 310 1 214 211 0 0 chr12 7229210 7229248 -136557207 + T-rich Low_complexity Low_complexity 1 38 0 2134 121 16 22 chr12 7229410 7229724 -136556731 - AluSx SINE Alu 0 312 1 1996 149 3 3 chr12 7230125 7230420 -136556035 + AluSx SINE Alu 1 295 -17 2357 79 0 0 chr12 7230421 7230732 -136555723 + AluY SINE Alu 1 311 0 2362 102 3 0 chr12 7230904 7231199 -136555256 + AluSg SINE Alu 2 297 -13 446 109 0 0 chr12 7231345 7231409 -136555046 - AluS SINE Alu -237 75 12 442 259 70 96 chr12 7231453 7231564 -136554891 + L2 LINE L2 2599 2711 -561 2064 138 3 3 chr12 7231564 7231876 -136554579 + AluSx SINE Alu 1 312 0 442 259 70 96 chr12 7231876 7232211 -136554244 + L2 LINE L2 2711 3039 -233 1122 200 33 9 chr12 7232304 7232519 -136553936 + AluJo SINE Alu 1 220 -92 1093 122 0 0 chr12 7232541 7232688 -136553767 + AluSg/x SINE Alu 155 301 -9 2349 70 0 3 chr12 7232691 7232993 -136553462 + AluY SINE Alu 1 301 -10 538 221 15 29 chr12 7232998 7233134 -136553321 + FLAM_A SINE Alu 4 137 -5 300 304 0 11 chr12 7233179 7233271 -136553184 + L2 LINE L2 3182 3272 0 828 154 0 0 chr12 7233341 7233464 -136552991 + FLAM_C SINE Alu 2 124 -9 25 0 0 0 chr12 7233464 7233489 -136552966 + AT_rich Low_complexity Low_complexity 1 25 0 2086 124 3 0 chr12 7233489 7233787 -136552668 + AluSx SINE Alu 1 299 -13 200 59 29 0 chr12 7233792 7233826 -136552629 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 192 282 237 15 chr12 7233837 7233968 -136552487 + L2 LINE L2 1833 1992 -1322 1729 119 90 4 chr12 7233978 7234255 -136552200 - AluSq SINE Alu -12 301 1 2249 99 0 0 chr12 7234255 7234558 -136551897 - AluSg SINE Alu -7 303 1 1965 123 0 43 chr12 7234565 7234891 -136551564 - AluSx SINE Alu 0 312 1 744 282 68 82 chr12 7235290 7235645 -136550810 + L2 LINE L2 2921 3270 -2 2153 109 3 3 chr12 7237008 7237310 -136549145 - AluSp SINE Alu -11 302 1 267 156 234 0 chr12 7237985 7238062 -136548393 + MIR SINE MIR 99 193 -69 661 238 43 5 chr12 7238411 7238596 -136547859 - AluSq SINE Alu 0 313 122 1304 220 14 14 chr12 7238604 7238890 -136547565 - AluSg SINE Alu -14 286 1 1329 221 13 30 chr12 7238893 7239053 -136547402 - AluJo SINE Alu -8 294 140 1943 119 7 4 chr12 7239053 7239331 -136547124 - AluSq SINE Alu -34 279 1 1329 221 13 30 chr12 7239331 7239469 -136546986 - AluJo SINE Alu -162 140 1 2015 103 13 13 chr12 7239592 7239893 -136546562 + AluSg SINE Alu 1 301 -9 2065 87 11 0 chr12 7239911 7240186 -136546269 + AluY SINE Alu 1 278 -33 258 32 0 0 chr12 7240201 7240232 -136546223 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1949 120 9 22 chr12 7240251 7240567 -136545888 + AluSx SINE Alu 1 312 0 2677 164 64 35 chr12 7240609 7241201 -136545254 + pTR5 LTR ERV1 738 1346 -1092 3655 163 109 28 chr12 7241215 7241975 -136544480 + LTR12 LTR ERV1 5 826 0 395 147 73 0 chr12 7241975 7242043 -136544412 + U6 snRNA snRNA 34 106 -1 1202 215 30 44 chr12 7242064 7242201 -136544254 + AluJo SINE Alu 1 138 -174 1943 119 7 4 chr12 7242201 7242479 -136543976 + AluSq SINE Alu 1 279 -34 1202 215 30 44 chr12 7242479 7242639 -136543816 + AluJo SINE Alu 138 294 -18 2198 106 7 0 chr12 7242642 7242943 -136543512 + AluSg SINE Alu 1 303 -7 2089 101 0 0 chr12 7242966 7243275 -136543180 + AluSg SINE Alu 5 313 0 902 147 61 35 chr12 7243278 7243476 -136542979 + AluJo SINE Alu 87 289 -23 1470 177 13 23 chr12 7243481 7243780 -136542675 + AluJo SINE Alu 1 296 -16 1777 166 3 0 chr12 7243783 7244079 -136542376 + AluJb SINE Alu 1 297 -15 298 301 13 46 chr12 7244081 7244245 -136542210 - L1ME3A LINE L1 -257 5909 5760 1143 203 38 31 chr12 7244478 7244739 -136541716 - L2 LINE L2 -621 2693 2431 598 241 91 66 chr12 7244888 7244941 -136541514 - L1ME3A LINE L1 -562 5600 5550 2076 109 0 0 chr12 7244941 7245252 -136541203 - AluSx SINE Alu 0 311 1 598 241 91 66 chr12 7245252 7245500 -136540955 - L1ME3A LINE L1 -612 5550 5310 2292 93 3 0 chr12 7245500 7245811 -136540644 - AluSx SINE Alu 0 312 1 2021 117 3 13 chr12 7245820 7246118 -136540337 - AluSx SINE Alu -17 295 1 598 241 91 66 chr12 7246118 7246312 -136540143 - L1ME3A LINE L1 -859 5303 5101 28 0 0 0 chr12 7246316 7246344 -136540111 + AT_rich Low_complexity Low_complexity 1 28 0 2160 94 0 10 chr12 7246344 7246643 -136539812 - AluSx SINE Alu -16 296 1 1052 113 0 0 chr12 7246644 7246795 -136539660 - AluSq SINE Alu -16 297 147 393 261 0 0 chr12 7246795 7246887 -136539568 + pTR5 LTR ERV1 743 834 -1604 1105 126 12 0 chr12 7247304 7247471 -136538984 - AluJb SINE Alu -16 296 128 248 164 0 55 chr12 7247499 7247554 -136538901 - FLAM_A SINE Alu 0 133 82 368 250 22 0 chr12 7247586 7247678 -136538777 - L2 LINE L2 -41 3231 3138 814 139 0 8 chr12 7247817 7247946 -136538509 - AluJ SINE Alu -182 130 3 424 227 42 50 chr12 7247971 7248090 -136538365 + L2 LINE L2 1332 1449 -1865 275 200 0 38 chr12 7249972 7250052 -136536403 + CT-rich Low_complexity Low_complexity 4 80 0 193 283 166 35 chr12 7251907 7252052 -136534403 - MIR SINE MIR -78 184 21 215 179 0 0 chr12 7252117 7252156 -136534299 + A-rich Low_complexity Low_complexity 4 42 0 233 288 45 0 chr12 7252771 7252837 -136533618 + MIR SINE MIR 117 185 -77 22 0 0 0 chr12 7254304 7254326 -136532129 + GC_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 7254445 7254476 -136531979 + GC_rich Low_complexity Low_complexity 1 31 0 4334 229 16 17 chr12 7255832 7257043 -136529412 + L1M4 LINE L1 3479 4690 -2875 1697 202 61 3 chr12 7257226 7257617 -136528838 - L1 LINE L1 -885 6680 6267 3788 60 10 4 chr12 7257620 7258121 -136528334 - L1MA1 LINE L1 -191 6111 5608 1310 199 17 20 chr12 7258126 7258427 -136528028 - L1 LINE L1 -1302 6263 5964 1307 115 5 29 chr12 7258544 7258753 -136527702 - L1PA13 LINE L1 -72 6091 5888 2934 234 24 36 chr12 7258755 7260020 -136526435 - L1 LINE L1 -4177 3389 2097 227 287 149 0 chr12 7260558 7260652 -136525803 + MER5A DNA MER1_type 9 116 -73 898 204 9 42 chr12 7260652 7260868 -136525587 + AluJo SINE Alu 85 293 -19 387 200 0 0 chr12 7263467 7263547 -136522908 - L1MA8 LINE L1 -1 6290 6211 183 326 90 22 chr12 7265064 7265153 -136521302 - MIR SINE MIR -108 154 60 841 246 21 38 chr12 7266101 7266337 -136520118 + MIR SINE MIR 19 250 -12 509 333 65 13 chr12 7266585 7266816 -136519639 + MIR SINE MIR 19 261 -1 286 230 103 0 chr12 7267555 7267642 -136518813 - MER5A DNA MER1_type -85 104 9 2290 86 0 0 chr12 7268863 7269164 -136517291 - AluY SINE Alu -10 301 1 2578 225 87 42 chr12 7269164 7269994 -136516461 + L1M4 LINE L1 4902 5768 -1797 1090 143 74 18 chr12 7270488 7270705 -136515750 + L1MB8 LINE L1 5935 6163 -15 451 167 0 105 chr12 7270955 7271069 -136515386 - AluY SINE Alu -5 306 205 234 184 0 0 chr12 7271580 7271618 -136514837 - L1M3 LINE L1 -673 5661 5624 1501 164 70 64 chr12 7271950 7272390 -136514065 - L1MB4 LINE L1 -2 6178 5736 325 239 34 29 chr12 7272703 7272826 -136513629 + MLT1L LTR MaLR 160 284 -304 302 243 56 19 chr12 7273047 7273154 -136513301 - L1MC4 LINE L1 -16 8026 7916 560 169 16 24 chr12 7277028 7277152 -136509303 - MER5A DNA MER1_type -66 123 1 923 120 103 40 chr12 7278160 7278366 -136508089 - MSTA LTR MaLR 0 428 180 449 228 28 107 chr12 7279093 7279308 -136507147 - MLT1J LTR MaLR -202 309 112 266 303 129 34 chr12 7279623 7279980 -136506475 - L1ME LINE L1 -239 5882 5492 334 268 18 18 chr12 7281002 7281114 -136505341 - L1ME LINE L1 -2962 3184 3073 248 268 14 14 chr12 7281115 7281186 -136505269 + CT-rich Low_complexity Low_complexity 3 73 0 1164 74 0 0 chr12 7481332 7481480 -136304975 + AluSg/x SINE Alu 159 306 -6 589 194 149 11 chr12 7481489 7481664 -136304791 + Charlie1 DNA MER1_type 1578 1776 -985 1010 193 0 0 chr12 7481685 7481861 -136304594 - AluJb SINE Alu 0 312 137 716 300 22 48 chr12 7481931 7482344 -136304111 - L2 LINE L2 -667 2647 2246 256 277 59 30 chr12 7483131 7483232 -136303223 + L2 LINE L2 3143 3246 -26 230 348 14 22 chr12 7483351 7483489 -136302966 + A-rich Low_complexity Low_complexity 4 140 0 2078 128 0 0 chr12 7484557 7484862 -136301593 - AluSx SINE Alu -7 305 1 234 163 0 0 chr12 7484863 7484906 -136301549 + L2 LINE L2 3266 3308 -5 1758 153 7 3 chr12 7484918 7485206 -136301249 + AluJb SINE Alu 1 289 -23 231 88 0 0 chr12 7486276 7486310 -136300145 + (GA)n Simple_repeat Simple_repeat 1 34 0 536 0 16 0 chr12 7486957 7487021 -136299434 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 439 103 0 0 chr12 7487021 7487079 -136299376 - AluSq SINE Alu -17 294 237 1177 117 6 17 chr12 7487088 7487268 -136299187 - AluSq SINE Alu -134 179 2 756 37 37 30 chr12 7487275 7487409 -136299046 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 2088 92 28 0 chr12 7487409 7487693 -136298762 - AluSx SINE Alu -18 294 3 227 147 10 59 chr12 7487698 7487704 -136298751 + (TCTA)n Simple_repeat Simple_repeat 2 7 -91 2313 91 0 0 chr12 7487704 7488000 -136298455 - AluSx SINE Alu -16 296 1 227 147 10 59 chr12 7488000 7488095 -136298360 + (TCTA)n Simple_repeat Simple_repeat 7 98 0 2072 112 6 10 chr12 7488112 7488425 -136298030 - AluSx SINE Alu 0 312 1 312 304 93 31 chr12 7488430 7488624 -136297831 - L1MEd LINE L1 -4954 1165 960 300 111 0 0 chr12 7488626 7488671 -136297784 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 613 263 154 54 chr12 7488847 7489288 -136297167 - LTR33 LTR ERVL -15 506 22 581 186 10 0 chr12 7490099 7490201 -136296254 + FRAM SINE Alu 56 158 -18 976 126 81 17 chr12 7490354 7490528 -136295927 - MER5A DNA MER1_type -3 186 2 2976 182 31 52 chr12 7490746 7491508 -136294947 - LTR5 LTR ERVK 0 969 224 2298 51 0 10 chr12 7491511 7491803 -136294652 - AluY SINE Alu -10 301 13 1178 171 14 0 chr12 7491807 7492024 -136294431 - LTR5 LTR ERVK -749 220 1 2838 142 139 42 chr12 7492462 7492876 -136293579 - MER51D LTR ERV1 0 657 166 1834 109 0 0 chr12 7492876 7493124 -136293331 - AluSx SINE Alu -64 248 1 2838 142 139 42 chr12 7493124 7493308 -136293147 - MER51D LTR ERV1 -491 166 1 21 0 0 0 chr12 7494008 7494029 -136292426 + AT_rich Low_complexity Low_complexity 1 21 0 784 177 0 35 chr12 7494126 7494258 -136292197 + FLAM_C SINE Alu 7 135 -177 1865 158 0 0 chr12 7494258 7494549 -136291906 - AluJb SINE Alu -21 291 1 22 0 0 0 chr12 7494557 7494579 -136291876 + AT_rich Low_complexity Low_complexity 1 22 0 2041 128 3 0 chr12 7494579 7494875 -136291580 + AluSx SINE Alu 1 297 -15 2152 110 0 0 chr12 7494903 7495203 -136291252 - AluY SINE Alu -11 300 1 2083 131 0 3 chr12 7495211 7495517 -136290938 - AluSx SINE Alu -7 305 1 501 255 55 28 chr12 7495517 7495661 -136290794 - L1ME4a LINE L1 -1 6120 5965 1742 169 52 0 chr12 7495661 7495951 -136290504 - AluJb SINE Alu -7 305 1 501 255 55 28 chr12 7495951 7496061 -136290394 - L1ME4a LINE L1 -156 5965 5859 2003 105 14 10 chr12 7496082 7496376 -136290079 - AluSc SINE Alu -14 295 1 2034 137 7 0 chr12 7496492 7496792 -136289663 - AluSx SINE Alu -10 302 1 2140 91 0 3 chr12 7496846 7497173 -136289282 + AluY SINE Alu 1 326 0 2029 114 0 7 chr12 7497173 7497505 -136288950 + AluSc SINE Alu 1 309 0 270 0 0 0 chr12 7497506 7497536 -136288919 + (CA)n Simple_repeat Simple_repeat 1 30 0 2127 206 12 67 chr12 7497555 7497934 -136288521 + L1MD1 LINE L1 4019 4417 -1729 1883 145 3 43 chr12 7497934 7498078 -136288377 + AluJo SINE Alu 1 149 -163 2375 77 0 0 chr12 7498078 7498378 -136288077 + AluY SINE Alu 1 300 -11 1883 145 3 43 chr12 7498378 7498558 -136287897 + AluJo SINE Alu 149 312 0 2127 206 12 67 chr12 7498558 7498624 -136287831 + L1MD1 LINE L1 4417 4485 -1661 2114 127 7 0 chr12 7498624 7498931 -136287524 + AluSx SINE Alu 1 309 -3 2127 206 12 67 chr12 7498931 7499126 -136287329 + L1MD1 LINE L1 4485 4625 -1521 894 190 0 62 chr12 7499127 7499322 -136287133 + AluJo SINE Alu 125 307 -5 836 143 0 0 chr12 7499360 7499493 -136286962 + AluJb SINE Alu 1 133 -179 291 54 0 0 chr12 7499496 7499533 -136286922 + (CA)n Simple_repeat Simple_repeat 2 38 0 306 239 9 119 chr12 7499535 7499644 -136286811 - L1MC4 LINE L1 -1342 6700 6604 301 135 0 0 chr12 7499646 7499698 -136286757 - Alu SINE Alu 0 300 249 694 201 47 0 chr12 7499698 7499847 -136286608 + AluSg/x SINE Alu 152 307 -5 4927 152 67 8 chr12 7499853 7500229 -136286226 + L1MD1 LINE L1 5209 5561 -681 2571 42 0 0 chr12 7500229 7500538 -136285917 + AluY SINE Alu 1 309 -2 4927 152 67 8 chr12 7500538 7501142 -136285313 + L1MD1 LINE L1 5561 6239 -3 2180 112 3 0 chr12 7501143 7501447 -136285008 + AluSx SINE Alu 2 306 -6 2237 94 10 0 chr12 7501516 7501824 -136284631 + AluY SINE Alu 1 311 0 416 307 76 69 chr12 7501909 7502394 -136284061 - L1ME4a LINE L1 -230 5891 5310 1861 144 0 10 chr12 7502554 7502852 -136283603 + AluJb SINE Alu 1 295 -17 2281 87 0 0 chr12 7503232 7503530 -136282925 - AluSx SINE Alu -11 301 4 279 367 106 27 chr12 7503710 7503966 -136282489 - L2 LINE L2 -936 2378 2103 21 0 0 0 chr12 7504782 7504803 -136281652 + AT_rich Low_complexity Low_complexity 1 21 0 1322 156 0 59 chr12 7504805 7504824 -136281631 - AluJo SINE Alu 0 312 293 2241 76 3 58 chr12 7504824 7505154 -136281301 - AluSx SINE Alu 0 312 1 1322 156 0 59 chr12 7505154 7505390 -136281065 - AluJo SINE Alu -19 293 72 1548 159 8 0 chr12 7505461 7505712 -136280743 + AluSx SINE Alu 1 253 -59 2186 100 3 0 chr12 7505741 7506040 -136280415 + AluSp SINE Alu 1 300 -13 333 0 0 0 chr12 7506115 7506152 -136280303 + (TG)n Simple_repeat Simple_repeat 2 38 0 600 146 64 9 chr12 7506152 7506254 -136280201 - AluSg/x SINE Alu -25 284 174 990 166 6 0 chr12 7506256 7506413 -136280042 - FRAM SINE Alu -7 159 2 1296 207 79 18 chr12 7506417 7506697 -136279758 - AluJo SINE Alu -5 297 1 556 287 47 19 chr12 7506799 7507081 -136279374 - L1MC4a LINE L1 -277 5897 5521 430 285 15 44 chr12 7507104 7507241 -136279214 + MIR SINE MIR 82 214 -48 220 148 0 37 chr12 7507895 7507949 -136278506 + (GGAGA)n Simple_repeat Simple_repeat 1 52 0 733 230 83 44 chr12 7508862 7509066 -136277389 + MIR SINE MIR 51 262 0 224 297 117 0 chr12 7509955 7510066 -136276389 + MIR SINE MIR 23 146 -62 198 290 81 0 chr12 7510170 7510232 -136276223 - MIR SINE MIR 0 262 196 328 266 0 0 chr12 7510263 7510354 -136276101 - MIR SINE MIR -99 109 19 529 154 0 15 chr12 7510999 7511135 -136275320 + (CA)n Simple_repeat Simple_repeat 2 135 0 294 269 0 0 chr12 7511151 7511307 -136275148 + (CA)n Simple_repeat Simple_repeat 1 156 0 695 201 6 0 chr12 7511350 7511529 -136274926 + (CA)n Simple_repeat Simple_repeat 1 180 0 200 221 0 15 chr12 7512269 7512337 -136274118 + G-rich Low_complexity Low_complexity 2 68 0 284 296 11 39 chr12 7512339 7512518 -136273937 + GA-rich Low_complexity Low_complexity 3 176 0 213 318 37 9 chr12 7513044 7513151 -136273304 - MIR SINE MIR -67 141 32 278 250 122 73 chr12 7513287 7513468 -136272987 - MIR SINE MIR -22 186 19 369 0 0 0 chr12 7514159 7514200 -136272255 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr12 7514199 7514221 -136272234 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 261 167 0 0 chr12 7515094 7515148 -136271307 + GA-rich Low_complexity Low_complexity 1 54 0 300 282 0 29 chr12 7515452 7515555 -136270900 + CT-rich Low_complexity Low_complexity 3 102 0 203 103 26 0 chr12 7516056 7516095 -136270360 + CT-rich Low_complexity Low_complexity 2 41 0 219 324 124 14 chr12 7516581 7516726 -136269729 + L3b LINE CR1 1422 1582 -1 499 250 42 0 chr12 7521175 7521343 -136265112 + (TGGG)n Simple_repeat Simple_repeat 1 175 0 333 186 0 44 chr12 7521629 7521742 -136264713 + CT-rich Low_complexity Low_complexity 5 112 0 192 77 0 0 chr12 7521800 7521826 -136264629 + (CTG)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr12 7522181 7522203 -136264252 + GC_rich Low_complexity Low_complexity 1 22 0 211 200 0 0 chr12 7524938 7524983 -136261472 + (CA)n Simple_repeat Simple_repeat 1 45 0 277 255 115 11 chr12 7525393 7525546 -136260909 + MIR SINE MIR 3 177 -69 805 193 21 101 chr12 7525670 7525908 -136260547 - MER20 DNA MER1_type 0 219 1 2255 93 0 6 chr12 7525934 7526245 -136260210 - AluSx SINE Alu -3 309 1 2023 87 0 4 chr12 7526271 7526546 -136259909 + AluSg SINE Alu 37 310 0 587 281 15 39 chr12 7526553 7526756 -136259699 + MIR SINE MIR 61 258 -4 394 306 93 32 chr12 7527820 7527995 -136258460 - L2 LINE L2 -6 3266 3103 2264 86 0 7 chr12 7527995 7528297 -136258158 + AluSp SINE Alu 1 300 -13 394 306 93 32 chr12 7528297 7528432 -136258023 - L2 LINE L2 -169 3103 2937 757 177 13 13 chr12 7528471 7528629 -136257826 + MIR SINE MIR 61 218 -44 2060 109 3 7 chr12 7528642 7528936 -136257519 + AluSq SINE Alu 1 293 -20 255 31 0 0 chr12 7528941 7528973 -136257482 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 1871 130 23 10 chr12 7529290 7529591 -136256864 + AluJb SINE Alu 6 310 -2 402 283 62 14 chr12 7531745 7531890 -136254565 + MIR SINE MIR 103 254 -8 189 107 0 0 chr12 7532675 7532703 -136253752 + (GGA)n Simple_repeat Simple_repeat 3 30 0 189 0 0 0 chr12 7534235 7534256 -136252199 + (CAGGC)n Simple_repeat Simple_repeat 3 23 0 258 301 14 14 chr12 7535088 7535161 -136251294 - L2 LINE L2 0 3272 3200 570 181 16 16 chr12 7535290 7535417 -136251038 + MER104 DNA Tc2 1 127 -53 584 283 12 6 chr12 7535441 7535607 -136250848 - MIR SINE MIR -16 246 80 887 139 8 0 chr12 7535608 7535737 -136250718 + FLAM_C SINE Alu 1 130 -3 562 322 55 15 chr12 7535925 7536127 -136250328 - MER63A DNA MER1_type 0 210 1 2243 105 0 16 chr12 7537435 7537748 -136248707 - AluSx SINE Alu -4 308 1 1798 175 3 3 chr12 7537759 7538062 -136248393 - AluJo SINE Alu -9 303 1 1308 251 60 9 chr12 7538144 7538563 -136247892 - L1MC4 LINE L1 -131 7911 7472 372 287 81 22 chr12 7539619 7539755 -136246700 + MIR3 SINE MIR 39 182 -26 504 200 0 0 chr12 7539955 7540080 -136246375 + (CA)n Simple_repeat Simple_repeat 1 125 0 410 353 8 46 chr12 7540982 7541223 -136245232 - L2 LINE L2 -493 2821 2590 755 193 0 7 chr12 7541273 7541408 -136245047 + AluJo SINE Alu 10 143 -169 2030 146 0 10 chr12 7541409 7541718 -136244737 + AluJb SINE Alu 1 306 -6 433 283 256 33 chr12 7541719 7542118 -136244337 - L2 LINE L2 -789 2525 2038 1754 149 43 0 chr12 7543346 7543503 -136242952 - AluJb SINE Alu -16 296 120 209 33 33 0 chr12 7543503 7543533 -136242922 + (TG)n Simple_repeat Simple_repeat 2 32 0 1754 149 43 0 chr12 7543533 7543657 -136242798 - AluJb SINE Alu -192 120 3 1567 155 14 14 chr12 7547829 7548106 -136238349 + AluJo SINE Alu 16 292 -20 258 299 17 51 chr12 7548582 7548699 -136237756 - MIR SINE MIR -142 120 8 1848 133 13 33 chr12 7550345 7550645 -136235810 + AluJo SINE Alu 1 294 -18 399 318 165 34 chr12 7551211 7551532 -136234923 - L2 LINE L2 -2 3311 2949 187 325 114 44 chr12 7551544 7551658 -136234797 + L3 LINE CR1 1454 1575 -2 900 140 0 22 chr12 7552078 7552214 -136234241 + FLAM_C SINE Alu 1 133 0 2243 74 0 14 chr12 7552987 7553296 -136233159 - AluSc SINE Alu 0 305 1 748 138 0 9 chr12 7555476 7555585 -136230870 - FLAM_C SINE Alu -33 110 3 237 254 0 167 chr12 7556225 7556363 -136230092 - MIR SINE MIR -61 147 33 2391 55 0 0 chr12 7557749 7558040 -136228415 + AluY SINE Alu 1 291 -20 963 100 0 23 chr12 7558774 7558904 -136227551 - FLAM_C SINE Alu -6 127 1 706 226 45 23 chr12 7558906 7559083 -136227372 + MER58A DNA MER1_type 42 222 -2 220 215 0 75 chr12 7560731 7560824 -136225631 + G-rich Low_complexity Low_complexity 4 89 0 26 0 0 0 chr12 7561048 7561074 -136225381 + GC_rich Low_complexity Low_complexity 1 26 0 302 261 99 21 chr12 7563192 7563313 -136223142 - MIR SINE MIR -60 148 23 201 283 17 17 chr12 7567380 7567440 -136219015 + MIR SINE MIR 45 104 -104 1254 113 9 75 chr12 7567444 7567625 -136218830 - AluJo SINE Alu -10 302 135 2170 117 7 0 chr12 7567625 7567932 -136218523 - AluSq SINE Alu -4 309 1 1254 113 9 75 chr12 7567932 7567963 -136218492 - AluJo SINE Alu -177 135 104 277 129 0 17 chr12 7567963 7568023 -136218432 - Alu SINE Alu -260 42 1 445 257 46 0 chr12 7568029 7568138 -136218317 + MIR SINE MIR 134 247 -15 749 294 37 5 chr12 7568183 7568401 -136218054 + MIR SINE MIR 2 226 -36 2128 99 20 3 chr12 7568666 7568960 -136217495 - AluSg SINE Alu -11 299 1 458 328 93 68 chr12 7569049 7569301 -136217154 - L2 LINE L2 -341 2973 2729 1230 184 3 108 chr12 7569301 7569633 -136216822 - AluY SINE Alu -14 297 1 458 328 93 68 chr12 7569633 7569704 -136216751 - L2 LINE L2 -585 2729 2661 2388 80 3 0 chr12 7569704 7570004 -136216451 + AluSp SINE Alu 1 301 -12 458 328 93 68 chr12 7570004 7570149 -136216306 - L2 LINE L2 -653 2661 2521 2370 93 0 0 chr12 7570149 7570459 -136215996 + AluSx SINE Alu 1 310 -2 458 328 93 68 chr12 7570459 7570801 -136215654 - L2 LINE L2 -793 2521 2140 1263 122 102 86 chr12 7571029 7571162 -136215293 + AluSg1 SINE Alu 1 130 -179 1977 94 54 27 chr12 7571162 7571460 -136214995 + AluSx SINE Alu 1 306 -6 1594 81 0 0 chr12 7571462 7571660 -136214795 + AluSx SINE Alu 1 198 -114 1263 122 102 86 chr12 7571660 7571780 -136214675 + AluSg1 SINE Alu 130 265 -44 195 42 0 0 chr12 7571780 7571804 -136214651 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1263 122 102 86 chr12 7571804 7571850 -136214605 + AluSg1 SINE Alu 265 309 0 2112 82 0 0 chr12 7571853 7572121 -136214334 + AluSp SINE Alu 44 311 -2 504 0 0 0 chr12 7572186 7572242 -136214213 + (TA)n Simple_repeat Simple_repeat 1 56 0 1878 119 20 3 chr12 7572278 7572572 -136213883 + L1PB1 LINE L1 5853 6151 0 1782 147 14 7 chr12 7572688 7572981 -136213474 + AluSx SINE Alu 1 295 -17 234 62 0 0 chr12 7573113 7573145 -136213310 + (CTG)n Simple_repeat Simple_repeat 1 32 0 2193 96 0 10 chr12 7573166 7573467 -136212988 + AluSx SINE Alu 1 298 -14 36 23 0 0 chr12 7573561 7573604 -136212851 + AT_rich Low_complexity Low_complexity 1 43 0 2316 66 0 26 chr12 7573604 7573909 -136212546 + AluY SINE Alu 1 297 -14 706 183 0 9 chr12 7573909 7574024 -136212431 - FLAM_A SINE Alu -15 118 5 1515 154 108 7 chr12 7574024 7574303 -136212152 - AluJo SINE Alu -5 307 1 1686 166 3 22 chr12 7574304 7574617 -136211838 - AluJb SINE Alu -5 307 1 633 244 74 33 chr12 7574658 7574776 -136211679 - L1ME3 LINE L1 -1 6161 6049 1605 149 52 17 chr12 7574776 7575064 -136211391 + AluJo SINE Alu 1 298 -14 2520 21 0 0 chr12 7575064 7575387 -136211068 + AluY SINE Alu 1 323 0 633 244 74 33 chr12 7575387 7575508 -136210947 - L1ME3 LINE L1 -112 6050 5910 666 203 182 0 chr12 7575517 7575660 -136210795 + FRAM SINE Alu 1 40 0 497 234 110 48 chr12 7575664 7575808 -136210647 - L1ME3 LINE L1 -258 5912 5748 2010 134 7 0 chr12 7575808 7576098 -136210357 - AluSx SINE Alu -20 292 1 497 234 110 48 chr12 7576098 7576180 -136210275 - L1ME3 LINE L1 -422 5748 5672 356 127 0 0 chr12 7576263 7576318 -136210137 + MER101 LTR ERV1 403 457 -17 1131 194 23 81 chr12 7576318 7576432 -136210023 + AluJo SINE Alu 21 140 -172 2101 76 4 0 chr12 7576432 7576696 -136209759 - AluSp SINE Alu -48 265 1 1131 194 23 81 chr12 7576696 7576891 -136209564 + AluJo SINE Alu 140 312 0 287 223 12 56 chr12 7576908 7577015 -136209440 - L1ME3 LINE L1 -470 5700 5598 276 270 10 40 chr12 7578138 7578238 -136208217 - L2 LINE L2 -967 2347 2251 2169 92 7 0 chr12 7578696 7578989 -136207466 - AluSg SINE Alu -15 295 1 7902 58 7 0 chr12 7579201 7580163 -136206292 - LTR5 LTR ERVK 0 969 1 249 108 0 0 chr12 7580191 7580228 -136206227 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 1938 143 3 10 chr12 7580231 7580545 -136205910 + AluSx SINE Alu 1 312 0 657 240 40 23 chr12 7580741 7580916 -136205539 - FRAM SINE Alu 0 176 1 342 329 53 74 chr12 7580919 7581028 -136205427 - Tigger7 DNA MER2_type -808 1679 1569 1960 121 3 58 chr12 7581028 7581358 -136205097 + AluSx SINE Alu 1 312 0 342 329 53 74 chr12 7581358 7581426 -136205029 - Tigger7 DNA MER2_type -918 1569 1501 1559 160 56 4 chr12 7581426 7581730 -136204725 - AluJb SINE Alu 0 318 1 342 329 53 74 chr12 7581730 7582128 -136204327 - Tigger7 DNA MER2_type -986 1501 1113 1795 131 31 0 chr12 7582128 7582418 -136204037 - AluSx SINE Alu -8 304 6 342 329 53 74 chr12 7582418 7582447 -136204008 - Tigger7 DNA MER2_type -1374 1113 1085 2103 106 7 0 chr12 7582684 7582976 -136203479 - AluSg SINE Alu -16 294 1 789 196 0 72 chr12 7583227 7583436 -136203019 - AluJo SINE Alu -1 311 118 2318 93 0 0 chr12 7583458 7583768 -136202687 - AluSq SINE Alu -3 310 1 332 315 161 0 chr12 7584211 7584341 -136202114 - MIR SINE MIR -71 191 41 257 169 0 101 chr12 7584414 7584503 -136201952 + (CCCCG)n Simple_repeat Simple_repeat 3 82 0 866 173 18 30 chr12 7585149 7585317 -136201138 + FRAM SINE Alu 1 164 -12 2087 114 10 0 chr12 7585394 7585702 -136200753 - AluSx SINE Alu -1 311 1 956 176 0 0 chr12 7585901 7586060 -136200395 + AluJb SINE Alu 137 295 -17 280 233 33 0 chr12 7586061 7586121 -136200334 - L2 LINE L2 -18 3295 3234 1820 151 23 7 chr12 7586146 7586451 -136200004 + AluJo SINE Alu 1 310 -2 196 246 18 18 chr12 7586479 7586536 -136199919 - L2 LINE L2 -848 2466 2410 2060 113 7 0 chr12 7586545 7586837 -136199618 + AluSq SINE Alu 1 294 -19 203 152 0 0 chr12 7586856 7586889 -136199566 + (CA)n Simple_repeat Simple_repeat 2 34 0 2142 121 0 6 chr12 7586985 7587299 -136199156 + AluSx SINE Alu 1 312 0 1990 164 44 19 chr12 7587657 7588023 -136198432 + THE1C LTR MaLR 1 375 0 1679 178 28 0 chr12 7588324 7588446 -136198009 + AluJb SINE Alu 1 118 -194 192 40 0 0 chr12 7588446 7588471 -136197984 + (CA)n Simple_repeat Simple_repeat 2 26 0 1679 178 28 0 chr12 7588471 7588635 -136197820 + AluJb SINE Alu 118 295 -17 2357 74 3 16 chr12 7588641 7588953 -136197502 + AluSq SINE Alu 1 308 -5 1368 180 24 45 chr12 7588953 7589242 -136197213 + AluJo SINE Alu 1 283 -29 1596 143 66 30 chr12 7589242 7589357 -136197098 + AluSx SINE Alu 1 110 -202 432 0 0 0 chr12 7589357 7589405 -136197050 + (CTA)n Simple_repeat Simple_repeat 1 48 0 1596 143 66 30 chr12 7589405 7589590 -136196865 + AluSx SINE Alu 110 312 0 271 274 35 0 chr12 7589622 7589735 -136196720 + L1M4 LINE L1 4735 4851 -1295 451 312 138 18 chr12 7589745 7590078 -136196377 + L1M4 LINE L1 4877 5249 -897 2568 158 164 8 chr12 7590094 7590583 -136195872 + MLT1F1 LTR MaLR 1 565 -2 1332 146 23 151 chr12 7590596 7590946 -136195509 + AluYb8 SINE Alu 1 305 -3 2269 91 0 0 chr12 7591330 7591627 -136194828 + AluSc SINE Alu 1 297 -12 2289 100 0 0 chr12 7591631 7591932 -136194523 + AluSq SINE Alu 1 301 -12 1855 151 7 10 chr12 7591971 7592139 -136194316 - AluSx SINE Alu -9 303 136 260 0 0 54 chr12 7592139 7592176 -136194279 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1757 108 17 45 chr12 7592176 7592464 -136193991 - AluSg SINE Alu -30 280 1 1855 151 7 10 chr12 7592464 7592598 -136193857 - AluSx SINE Alu -174 138 1 1497 153 0 34 chr12 7592679 7592947 -136193508 + AluJo SINE Alu 2 260 -52 226 244 0 0 chr12 7592982 7593027 -136193428 + MER5A DNA MER1_type 9 53 -136 650 177 0 9 chr12 7593203 7593316 -136193139 + FRAM SINE Alu 1 104 -72 1831 210 78 12 chr12 7593320 7593744 -136192711 + MER66A LTR ERV1 27 478 0 1607 168 82 25 chr12 7593776 7593870 -136192585 - MER51A LTR ERV1 0 634 547 1521 86 70 45 chr12 7593870 7594114 -136192341 - AluSg SINE Alu -6 304 55 1607 168 82 25 chr12 7594114 7594425 -136192030 - MER51A LTR ERV1 -87 547 225 404 73 0 0 chr12 7594429 7594484 -136191971 - MER51A LTR ERV1 -578 56 2 262 208 0 0 chr12 7594485 7594533 -136191922 + FLAM_A SINE Alu 85 132 -1 2467 48 0 22 chr12 7594536 7594852 -136191603 + AluY SINE Alu 3 311 0 2130 113 0 0 chr12 7595018 7595319 -136191136 - AluSx SINE Alu -11 301 1 1156 118 0 0 chr12 7595319 7595480 -136190975 - AluSg/x SINE Alu -18 292 132 2173 78 20 3 chr12 7595480 7595774 -136190681 - AluSq SINE Alu -14 299 1 189 301 0 24 chr12 7596116 7596199 -136190256 + MIR SINE MIR 182 262 0 1993 144 0 6 chr12 7596342 7596655 -136189800 + AluJo SINE Alu 1 311 -1 570 332 18 9 chr12 7596930 7597147 -136189308 - MIR SINE MIR -21 241 23 314 231 128 13 chr12 7597403 7597538 -136188917 + MIR SINE MIR 100 256 -6 240 302 0 0 chr12 7599026 7599089 -136187366 + GA-rich Low_complexity Low_complexity 2 64 0 730 284 62 37 chr12 7600104 7600425 -136186030 - L2 LINE L2 0 3313 2985 213 260 27 14 chr12 7600804 7600877 -136185578 + MIR3 SINE MIR 6 79 -129 2490 176 97 36 chr12 7601062 7601586 -136184869 - MER21A LTR ERV1 0 931 376 973 149 63 115 chr12 7601592 7601656 -136184799 - MER21A LTR ERV1 -668 263 197 2306 92 0 0 chr12 7601656 7601962 -136184493 + AluSx SINE Alu 1 306 -6 1612 65 0 28 chr12 7601971 7602185 -136184270 + AluY SINE Alu 94 301 -10 973 149 63 115 chr12 7602185 7602379 -136184076 - MER21A LTR ERV1 -742 189 9 314 278 46 53 chr12 7602379 7602530 -136183925 + L1MCa LINE L1 1942 2091 -4335 * 389 292 61 37 chr12 7602395 7602913 -136183542 - L1MC5 LINE L1 -182 8059 1970 356 347 0 16 chr12 7603559 7603643 -136182812 - L2 LINE L2 -1 3271 3188 1547 146 38 89 chr12 7603643 7603768 -136182687 + AluJo SINE Alu 1 131 -181 1773 168 3 13 chr12 7603768 7604083 -136182372 + AluJb SINE Alu 1 312 0 1547 146 38 89 chr12 7604083 7604272 -136182183 + AluJo SINE Alu 131 299 -13 356 347 0 16 chr12 7604272 7604311 -136182144 - L2 LINE L2 -84 3188 3150 261 228 215 0 chr12 7604867 7604946 -136181509 + MER20B DNA MER1_type 68 163 -620 1726 159 20 7 chr12 7605069 7605364 -136181091 + AluJo SINE Alu 3 301 -11 948 136 28 40 chr12 7605533 7605709 -136180746 - AluJo SINE Alu -54 258 85 2250 101 0 0 chr12 7606897 7607204 -136179251 - AluSc SINE Alu -2 307 1 230 222 0 25 chr12 7607900 7607981 -136178474 + (CCG)n Simple_repeat Simple_repeat 1 79 0 222 333 11 11 chr12 7610564 7610651 -136175804 + L3b LINE CR1 1303 1389 -194 2269 42 42 3 chr12 7611695 7611980 -136174475 - AluY SINE Alu -15 296 1 2428 66 0 0 chr12 7612041 7612345 -136174110 + AluSx SINE Alu 1 304 -8 305 233 214 53 chr12 7612505 7612711 -136173744 + MIR SINE MIR 3 241 -21 534 306 31 0 chr12 7613462 7613684 -136172771 + L3b LINE CR1 1190 1418 -165 2290 93 3 3 chr12 7613728 7614040 -136172415 - AluSp SINE Alu -1 312 1 957 119 0 7 chr12 7614058 7614201 -136172254 - FLAM_C SINE Alu -1 142 1 1244 118 165 9 chr12 7614207 7614419 -136172036 - AluSx SINE Alu -67 245 1 1671 181 14 0 chr12 7614453 7614746 -136171709 + AluJb SINE Alu 1 297 -15 200 33 0 33 chr12 7616629 7616659 -136169796 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 336 48 0 0 chr12 7618441 7618483 -136167972 + (TG)n Simple_repeat Simple_repeat 1 42 0 2110 85 20 0 chr12 7619815 7620109 -136166346 - AluSx SINE Alu -12 300 1 248 214 10 61 chr12 7620920 7621071 -136165384 + CT-rich Low_complexity Low_complexity 1 143 0 196 98 24 24 chr12 7621078 7621119 -136165336 + (TCTCCC)n Simple_repeat Simple_repeat 1 41 0 310 201 12 67 chr12 7621280 7621498 -136164957 + (CGGGG)n Simple_repeat Simple_repeat 1 206 0 25 51 0 0 chr12 7621559 7621598 -136164857 + GC_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr12 7621734 7621763 -136164692 + GC_rich Low_complexity Low_complexity 1 29 0 499 232 120 14 chr12 7623391 7623533 -136162922 + MIR3 SINE MIR 20 176 -32 2235 45 0 21 chr12 7623854 7624141 -136162314 + AluY SINE Alu 1 281 -30 271 0 0 0 chr12 7624141 7624171 -136162284 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 198 0 0 0 chr12 7624750 7624772 -136161683 + (A)n Simple_repeat Simple_repeat 1 22 0 2341 99 0 3 chr12 7624772 7625086 -136161369 + AluSq SINE Alu 1 313 0 2399 80 3 3 chr12 7625092 7625404 -136161051 + AluSq SINE Alu 1 312 -1 698 266 76 25 chr12 7626298 7626535 -136159920 + MIR SINE MIR 1 249 -13 1901 118 90 0 chr12 7626551 7626830 -136159625 - AluSg SINE Alu -6 304 1 2085 124 16 0 chr12 7628221 7628528 -136157927 - AluSx SINE Alu 0 312 1 223 239 0 0 chr12 7629761 7629807 -136156648 + CT-rich Low_complexity Low_complexity 2 47 0 489 34 0 0 chr12 7630057 7630116 -136156339 + (CAG)n Simple_repeat Simple_repeat 1 59 0 228 67 0 0 chr12 7631463 7631493 -136154962 + (CGCTG)n Simple_repeat Simple_repeat 4 33 0 2034 129 0 7 chr12 7632841 7633144 -136153311 - AluJb SINE Alu -11 301 1 2151 86 0 33 chr12 7633328 7633630 -136152825 - AluSc SINE Alu -17 292 1 1905 112 0 7 chr12 7633639 7633908 -136152547 - AluSx SINE Alu -45 267 1 190 370 50 42 chr12 7634518 7634637 -136151818 + MIR SINE MIR 20 139 -123 23 0 0 0 chr12 7635566 7635589 -136150866 + AT_rich Low_complexity Low_complexity 1 23 0 1414 160 141 0 chr12 7635932 7636194 -136150261 + AluJo SINE Alu 3 301 -1 2026 108 7 7 chr12 7636364 7636660 -136149795 + AluSg SINE Alu 1 296 -14 536 32 0 0 chr12 7637157 7637219 -136149236 + U7 snRNA snRNA 2 63 0 1802 131 93 44 chr12 7638192 7638535 -136147920 - MER46B DNA MER2_type -1 235 1 1158 286 52 50 chr12 7640522 7640728 -136145727 - L2 LINE L2 -2 3311 3107 2010 138 7 3 chr12 7640728 7641033 -136145422 + AluJo SINE Alu 1 306 -6 1158 286 52 50 chr12 7641033 7641270 -136145185 - L2 LINE L2 -206 3107 2867 831 126 0 0 chr12 7641354 7641473 -136144982 + AluJo/FLAM SINE Alu 11 129 -183 1465 196 47 17 chr12 7641475 7641593 -136144862 + AluJb SINE Alu 3 116 -241 204 67 0 0 chr12 7641593 7641623 -136144832 + (CTA)n Simple_repeat Simple_repeat 1 30 0 1465 196 47 17 chr12 7641623 7641850 -136144605 + AluJb SINE Alu 116 357 0 310 293 43 17 chr12 7641851 7641967 -136144488 + L1M4 LINE L1 3073 3191 -2955 2131 102 0 22 chr12 7641999 7642313 -136144142 + AluSg SINE Alu 1 307 -3 571 236 82 32 chr12 7642769 7642989 -136143466 + MIR SINE MIR 2 232 -30 196 355 0 0 chr12 7643010 7643086 -136143369 - MIR SINE MIR -101 161 86 1925 86 119 0 chr12 7643152 7643420 -136143035 - AluSg SINE Alu 0 300 1 246 289 0 0 chr12 7643423 7643499 -136142956 - L1ME3 LINE L1 -68 6094 6019 311 310 113 7 chr12 7643522 7643664 -136142791 - HAL1 LINE L1 -1 2506 2350 896 277 28 16 chr12 7644096 7644345 -136142110 + MIR SINE MIR 9 260 -2 246 310 78 17 chr12 7645791 7645907 -136140548 - L3 LINE CR1 -125 1452 1330 215 365 151 0 chr12 7646363 7646522 -136139933 - L3 LINE CR1 -809 768 586 601 100 89 0 chr12 7647784 7647874 -136138581 + AluJb SINE Alu 172 269 -43 557 247 25 19 chr12 7647903 7648061 -136138394 + MIR SINE MIR 87 245 -17 223 336 103 54 chr12 7650427 7650778 -136135677 + L2 LINE L2 2899 3266 -6 308 244 26 0 chr12 7650792 7650870 -136135585 - MIR SINE MIR -98 110 31 537 186 150 0 chr12 7652126 7652239 -136134216 + MIR SINE MIR 63 192 -70 272 345 59 8 chr12 7653907 7654026 -136132429 - L2 LINE L2 -5 3267 3143 633 268 141 42 chr12 7654920 7655133 -136131322 - MIR SINE MIR -13 249 16 2133 102 3 13 chr12 7660083 7660388 -136126067 - AluSx SINE Alu -10 302 1 216 188 0 62 chr12 7661364 7661428 -136125027 + G-rich Low_complexity Low_complexity 4 63 0 200 259 69 0 chr12 7662692 7662750 -136123705 - MIR SINE MIR -90 172 111 2451 53 3 0 chr12 7662958 7663258 -136123197 + AluSx SINE Alu 1 301 -11 2285 87 0 6 chr12 7664604 7664915 -136121540 - AluSx SINE Alu -3 309 1 1105 86 7 0 chr12 7665406 7665558 -136120897 - AluSc SINE Alu -10 299 147 1695 173 13 16 chr12 7666173 7666479 -136119976 - AluJb SINE Alu -7 305 1 1828 159 48 0 chr12 7666518 7666807 -136119648 - AluSx SINE Alu -9 303 1 2208 61 46 0 chr12 7666901 7667181 -136119274 - AluY SINE Alu -18 293 1 706 166 70 0 chr12 7667475 7667623 -136118832 - MER5A DNA MER1_type -17 161 3 2140 100 7 0 chr12 7669782 7670071 -136116384 + AluSx SINE Alu 1 291 -21 195 299 154 0 chr12 7671310 7671427 -136115028 - L2 LINE L2 -43 3229 3095 1732 158 16 41 chr12 7673362 7673678 -136112777 - AluJo SINE Alu 0 312 5 1721 160 7 27 chr12 7673702 7673995 -136112460 - AluJo SINE Alu -25 287 1 255 103 0 0 chr12 7673996 7674035 -136112420 + (CCTA)n Simple_repeat Simple_repeat 1 39 0 461 105 132 0 chr12 7675458 7675534 -136110921 - AluJb SINE Alu -142 170 85 974 128 0 14 chr12 7675536 7675677 -136110778 - AluJb SINE Alu -173 139 1 192 357 43 0 chr12 7675866 7675936 -136110519 - MIR SINE MIR -102 106 34 24 32 0 0 chr12 7676266 7676297 -136110158 + AT_rich Low_complexity Low_complexity 1 31 0 563 168 19 0 chr12 7676310 7676417 -136110038 - FRAM SINE Alu -1 175 67 822 149 0 43 chr12 7677199 7677340 -136109115 + AluJo SINE Alu 1 135 -177 1992 134 7 7 chr12 7677922 7678220 -136108235 - AluJo SINE Alu -11 301 4 180 0 0 0 chr12 7678428 7678448 -136108007 + (A)n Simple_repeat Simple_repeat 1 20 0 2414 70 3 16 chr12 7678448 7678762 -136107693 + AluY SINE Alu 1 310 -1 2167 92 3 50 chr12 7678773 7679090 -136107365 + AluSx SINE Alu 6 307 -5 2160 117 13 0 chr12 7679102 7679400 -136107055 + AluSq SINE Alu 1 302 -11 314 243 0 0 chr12 7679400 7679470 -136106985 + Tigger2 DNA MER2_type 2649 2718 0 249 268 0 0 chr12 7679507 7679563 -136106892 - L2 LINE L2 0 3272 3217 21 0 0 0 chr12 7679871 7679892 -136106563 + AT_rich Low_complexity Low_complexity 1 21 0 2338 61 27 10 chr12 7681114 7681408 -136105047 + AluSp SINE Alu 1 299 -14 2415 32 56 3 chr12 7681583 7681867 -136104588 - AluY SINE Alu -12 299 1 1816 148 0 48 chr12 7682160 7682493 -136103962 + AluJo SINE Alu 1 312 0 2452 69 0 0 chr12 7682497 7682788 -136103667 + AluY SINE Alu 1 291 -20 360 0 0 0 chr12 7682796 7682836 -136103619 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4574 165 74 42 chr12 7682836 7682912 -136103543 - Charlie1a DNA MER1_type -1355 1406 1334 2137 128 20 0 chr12 7682912 7683216 -136103239 + AluSx SINE Alu 3 312 0 4574 165 74 42 chr12 7683216 7684185 -136102270 - Charlie1a DNA MER1_type -1427 1334 324 1059 133 33 0 chr12 7684187 7684337 -136102118 + AluSx SINE Alu 4 158 -154 1034 161 124 0 chr12 7684393 7684425 -136102030 + AluJb SINE Alu 87 114 -198 221 0 0 33 chr12 7684425 7684455 -136102000 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1034 161 124 0 chr12 7684455 7684615 -136101840 + AluJb SINE Alu 114 303 -9 1483 198 32 18 chr12 7684615 7684898 -136101557 - Charlie1a DNA MER1_type -1159 296 10 1172 167 39 10 chr12 7685040 7685244 -136101211 + MER2 DNA MER2_type 1 210 -135 27 29 0 0 chr12 7685244 7685278 -136101177 + AT_rich Low_complexity Low_complexity 1 34 0 288 171 0 0 chr12 7685283 7685324 -136101131 + MER2 DNA MER2_type 304 344 -1 2394 151 15 96 chr12 7685347 7685428 -136101027 - L1MB7 LINE L1 -16 6168 6082 2283 92 14 0 chr12 7685428 7685720 -136100735 + AluSc SINE Alu 2 297 -12 2394 151 15 96 chr12 7685720 7686058 -136100397 - L1MB7 LINE L1 -102 6082 5797 819 179 0 0 chr12 7686058 7686181 -136100274 - FLAM_C SINE Alu -10 123 1 2394 151 15 96 chr12 7686181 7686283 -136100172 - L1MB7 LINE L1 -387 5797 5688 768 146 0 0 chr12 7686283 7686393 -136100062 - FLAM_C SINE Alu -20 123 14 460 88 0 100 chr12 7686395 7686475 -136099980 - L1M4 LINE L1 -493 5691 5620 2205 118 0 0 chr12 7686475 7686771 -136099684 - AluSx SINE Alu -10 302 7 1575 161 47 0 chr12 7686771 7687024 -136099431 - AluJb SINE Alu -46 266 1 254 350 97 32 chr12 7687119 7687466 -136098989 + L2 LINE L2 2100 2423 -891 2377 82 0 3 chr12 7687466 7687758 -136098697 + AluSg SINE Alu 5 295 -15 254 350 97 32 chr12 7687758 7687832 -136098623 + L2 LINE L2 2423 2491 -823 195 100 0 0 chr12 7687832 7687862 -136098593 + (CACCAT)n Simple_repeat Simple_repeat 6 35 0 254 350 97 32 chr12 7687862 7687973 -136098482 + L2 LINE L2 2491 2668 -646 822 232 103 91 chr12 7688046 7688850 -136097605 + L2 LINE L2 2503 3306 -7 256 264 0 42 chr12 7688887 7688959 -136097496 - L2 LINE L2 -7 3306 3238 542 135 0 11 chr12 7689362 7689451 -136097004 - Charlie2 DNA MER1_type -4 2858 2771 1065 186 0 0 chr12 7689458 7689630 -136096825 - AluJb SINE Alu -1 311 140 441 0 0 0 chr12 7689649 7689698 -136096757 + (TG)n Simple_repeat Simple_repeat 2 50 0 1777 124 33 40 chr12 7689702 7689850 -136096605 - AluSx SINE Alu -31 281 134 2419 88 3 0 chr12 7689850 7690155 -136096300 - AluSp SINE Alu -7 306 1 1777 124 33 40 chr12 7690155 7690279 -136096176 - AluSx SINE Alu -178 134 11 1748 196 0 0 chr12 7690299 7690585 -136095870 - AluJo SINE Alu -26 286 1 271 161 306 0 chr12 7690629 7690691 -136095764 - Charlie2a DNA MER1_type -1258 1604 1524 391 306 90 0 chr12 7691103 7691247 -136095208 - MIR3 SINE MIR -35 173 17 2389 92 0 3 chr12 7692183 7692489 -136093966 - AluY SINE Alu -6 305 1 545 117 161 95 chr12 7692662 7692799 -136093656 + MER69 DNA AcHobo 2 147 -2379 395 183 0 0 chr12 7692793 7692864 -136093591 + MER69 DNA AcHobo 2447 2517 -9 * 2401 87 0 0 chr12 7694211 7694509 -136091946 + AluSg SINE Alu 1 298 -12 254 180 0 38 chr12 7694951 7695011 -136091444 - FLAM SINE Alu -9 124 76 2921 16 0 0 chr12 7695123 7695436 -136091019 + AluYb8 SINE Alu 1 313 -5 850 252 52 20 chr12 7695794 7696044 -136090411 - MIR SINE MIR -2 260 3 224 299 31 16 chr12 7696227 7696354 -136090101 + L2 LINE L2 2687 2815 -499 4782 137 46 28 chr12 7696431 7697417 -136089038 - L1MB7 LINE L1 -47 6137 5133 26 64 0 0 chr12 7697487 7697534 -136088921 + AT_rich Low_complexity Low_complexity 1 47 0 1909 133 0 0 chr12 7697738 7698001 -136088454 - AluSx SINE Alu -49 263 1 2317 73 3 26 chr12 7698530 7698833 -136087622 - AluSq SINE Alu -17 296 1 2520 80 0 0 chr12 7698976 7699277 -136087178 - AluSx SINE Alu -11 301 1 1193 123 0 0 chr12 7700089 7700251 -136086204 + AluSg/x SINE Alu 136 297 -13 207 250 19 0 chr12 7700433 7700485 -136085970 + MIR SINE MIR 84 136 -126 2032 109 4 0 chr12 7700577 7700843 -136085612 - AluSx SINE Alu -45 267 1 713 229 47 0 chr12 7700916 7701086 -136085369 - MER5A DNA MER1_type -1 188 11 232 231 46 0 chr12 7701157 7701222 -136085233 - MIR SINE MIR -32 230 163 196 293 10 61 chr12 7701781 7701880 -136084575 + L2 LINE L2 2950 3043 -229 183 80 0 0 chr12 7701893 7701918 -136084537 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 809 196 14 14 chr12 7701918 7702066 -136084389 - AluJb SINE Alu -32 280 133 967 211 0 0 chr12 7702328 7702489 -136083966 - FRAM SINE Alu -20 156 1 1614 173 3 63 chr12 7702499 7702817 -136083638 - AluJb SINE Alu -13 299 1 2003 157 3 10 chr12 7702845 7703158 -136083297 + AluJb SINE Alu 1 311 -1 222 280 0 0 chr12 7703252 7703302 -136083153 - L3 LINE CR1 -11 1566 1517 285 318 20 34 chr12 7703865 7704013 -136082442 + MIR SINE MIR 100 245 -17 367 231 13 0 chr12 7704013 7704091 -136082364 - MER5A DNA MER1_type -100 89 11 232 231 46 0 chr12 7704162 7704227 -136082228 - MIR SINE MIR -32 230 163 196 293 10 61 chr12 7704786 7704885 -136081570 + L2 LINE L2 2950 3043 -229 183 80 0 0 chr12 7704898 7704923 -136081532 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 809 196 14 14 chr12 7704923 7705071 -136081384 - AluJb SINE Alu -32 280 133 967 211 0 0 chr12 7705333 7705494 -136080961 - FRAM SINE Alu -20 156 1 1658 172 0 63 chr12 7705504 7705823 -136080632 - AluJb SINE Alu -13 299 1 1995 157 3 10 chr12 7705851 7706163 -136080292 + AluJb SINE Alu 1 310 -2 222 280 0 0 chr12 7706257 7706307 -136080148 - L3 LINE CR1 -11 1566 1517 358 315 18 30 chr12 7706870 7707035 -136079420 + MIR SINE MIR 100 262 0 578 298 207 15 chr12 7707417 7708114 -136078341 - L2 LINE L2 0 3272 2431 253 293 116 63 chr12 7708137 7708550 -136077905 + L2 LINE L2 2521 2955 -359 2188 86 6 48 chr12 7709087 7709401 -136077054 + AluSc SINE Alu 1 301 -8 600 178 30 54 chr12 7709410 7709610 -136076845 - MER112 DNA MER1_type 0 260 1 1375 169 92 18 chr12 7710586 7710752 -136075703 - AluJb SINE Alu -15 297 102 2218 125 0 6 chr12 7710752 7711063 -136075392 - AluSx SINE Alu -3 309 1 1375 169 92 18 chr12 7711063 7711169 -136075286 - AluJb SINE Alu -210 102 5 410 328 64 12 chr12 7711808 7711979 -136074476 - MIR SINE MIR -80 182 3 23 0 0 0 chr12 7713357 7713380 -136073075 + GC_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr12 7713672 7713704 -136072751 + AT_rich Low_complexity Low_complexity 1 32 0 248 246 18 0 chr12 7713840 7713897 -136072558 - L2 LINE L2 -12 3301 3244 224 321 120 11 chr12 7714113 7714297 -136072158 - MIR SINE MIR -40 222 19 1835 153 13 23 chr12 7714567 7714867 -136071588 + AluJb SINE Alu 1 297 -15 1556 85 0 10 chr12 7714879 7715079 -136071376 + AluSq SINE Alu 21 218 -95 1448 148 83 105 chr12 7715081 7715539 -136070916 - LTR7 LTR ERV1 -2 448 1 652 81 0 0 chr12 7715540 7715627 -136070828 + AluSq SINE Alu 215 301 -12 2319 113 0 0 chr12 7715627 7715927 -136070528 + AluSx SINE Alu 1 300 -12 247 163 61 0 chr12 7715937 7715986 -136070469 + Tigger3(Golem) DNA MER2_type 2568 2619 -410 3447 159 36 62 chr12 7716002 7716049 -136070406 + LTR8A LTR ERV1 34 81 -646 2028 129 14 3 chr12 7716049 7716335 -136070120 - AluSx SINE Alu -23 289 1 3447 159 36 62 chr12 7716335 7716999 -136069456 + LTR8A LTR ERV1 81 727 0 1559 115 3 92 chr12 7716999 7717144 -136069311 + Tigger3(Golem) DNA MER2_type 2618 2724 -305 2322 81 10 10 chr12 7717144 7717442 -136069013 - AluSp SINE Alu -15 298 1 1559 115 3 92 chr12 7717442 7717601 -136068854 + Tigger3(Golem) DNA MER2_type 2724 2895 -134 4132 142 63 8 chr12 7717607 7718274 -136068181 + MER72 LTR ERV1 5 708 -14 3751 168 31 0 chr12 7718274 7718970 -136067485 + ERVL-B1 LTR ERVL 627 1390 -4374 592 227 8 0 chr12 7718970 7719102 -136067353 + FLAM_C SINE Alu 1 133 -10 2102 98 9 60 chr12 7719110 7719427 -136067028 + AluSx SINE Alu 1 301 -11 1838 133 20 25 chr12 7719443 7719790 -136066665 - MER4A LTR ERV1 0 664 261 618 84 53 21 chr12 7719790 7719885 -136066570 - MER4A LTR ERV1 -566 98 1 2050 123 17 0 chr12 7719894 7720196 -136066259 - AluSx SINE Alu -5 307 1 2237 64 3 0 chr12 7720210 7720528 -136065927 - AluY SINE Alu 0 319 1 6840 93 64 14 chr12 7720528 7721622 -136064833 - MER4-int LTR ERV1 -1283 5315 4167 2161 104 7 0 chr12 7721637 7721934 -136064521 - AluSp SINE Alu -14 299 1 1332 144 0 111 chr12 7721938 7722051 -136064404 + ERVL-B1 LTR ERVL 2583 2650 -3114 1422 138 8 175 chr12 7722051 7722406 -136064049 - AluJb SINE Alu -16 296 1 1332 144 0 111 chr12 7722406 7722562 -136063893 + ERVL-B1 LTR ERVL 2650 2822 -2942 3352 151 14 35 chr12 7722607 7722634 -136063821 + ERVL-B1 LTR ERVL 2796 2822 -2942 2241 79 3 0 chr12 7722634 7722926 -136063529 - AluSg SINE Alu -17 293 1 3352 151 14 35 chr12 7722926 7723434 -136063021 + ERVL-B1 LTR ERVL 2822 3321 -2443 1741 148 0 59 chr12 7723434 7723758 -136062697 - AluJb SINE Alu -7 305 1 3352 151 14 35 chr12 7723758 7723784 -136062671 + ERVL-B1 LTR ERVL 3321 3346 -2418 2233 62 0 34 chr12 7723789 7724121 -136062334 - AluY SINE Alu 0 322 1 1667 143 0 26 chr12 7724160 7724393 -136062062 + ERVL-B1 LTR ERVL 3334 3561 -2203 2420 60 3 0 chr12 7724393 7724693 -136061762 + AluSp SINE Alu 1 301 -12 1667 143 0 26 chr12 7724693 7724724 -136061731 + ERVL-B1 LTR ERVL 3561 3591 -2173 8066 177 65 18 chr12 7724725 7726325 -136060130 - MER52A LTR ERV1 0 1755 1 1058 165 110 0 chr12 7726325 7726525 -136059930 + ERVL-B1 LTR ERVL 3589 3810 -1954 22 0 0 0 chr12 7726525 7726547 -136059908 + AT_rich Low_complexity Low_complexity 1 22 0 1925 164 6 3 chr12 7726991 7727303 -136059152 - LTR26 LTR ERV1 0 603 291 240 103 179 0 chr12 7727376 7727415 -136059040 - LTR26 LTR ERV1 -269 334 289 244 139 23 0 chr12 7727431 7727474 -136058981 - LTR26 LTR ERV1 -269 334 291 226 67 0 0 chr12 7727582 7727612 -136058843 - LTR26 LTR ERV1 -283 320 291 232 67 0 0 chr12 7727912 7727942 -136058513 - LTR26 LTR ERV1 -283 320 291 396 154 0 110 chr12 7728076 7728167 -136058288 - LTR26 LTR ERV1 -283 320 240 827 170 0 27 chr12 7728168 7728315 -136058140 - FLAM_C SINE Alu 0 143 1 1295 142 50 0 chr12 7728315 7728533 -136057922 - LTR26 LTR ERV1 -355 248 20 465 206 28 0 chr12 7728534 7728641 -136057814 - FLAM_A SINE Alu -21 121 12 11415 149 18 43 chr12 7728650 7730257 -136056198 + ERVL-B1 LTR ERVL 3794 5408 -356 263 152 0 106 chr12 7730257 7730323 -136056132 - AluJb SINE Alu -166 136 78 11415 149 18 43 chr12 7730323 7730665 -136055790 + ERVL-B1 LTR ERVL 5408 5757 -7 1423 242 85 0 chr12 7730665 7730995 -136055460 + MLT2B1 LTR ERVL 1 358 -162 1081 87 12 17 chr12 7731007 7731179 -136055276 + HSMAR2 DNA Mariner 1 171 -1131 3762 153 24 128 chr12 7731726 7733263 -136053192 + pTR5 LTR ERV1 743 2606 0 714 236 21 37 chr12 7734103 7734344 -136052111 - L1M4 LINE L1 -868 5278 5042 1525 158 12 67 chr12 7734357 7734528 -136051927 - AluSq SINE Alu -1 312 166 2093 50 0 8 chr12 7734528 7734790 -136051665 - AluY SINE Alu -51 260 1 1525 158 12 67 chr12 7734790 7734948 -136051507 - AluSq SINE Alu -147 166 1 415 289 73 113 chr12 7736291 7736427 -136050028 - HAL1b LINE L1 -993 355 215 198 91 0 0 chr12 7736427 7736460 -136049995 + (TA)n Simple_repeat Simple_repeat 2 34 0 2175 101 0 0 chr12 7736461 7736748 -136049707 - AluSx SINE Alu -21 291 5 415 289 73 113 chr12 7736748 7736979 -136049476 - HAL1b LINE L1 -1132 216 1 3747 175 20 1 chr12 7737162 7737647 -136048808 - L1MC3 LINE L1 0 7785 7282 2017 121 0 19 chr12 7737647 7737961 -136048494 - AluSg SINE Alu -2 308 1 3747 175 20 1 chr12 7737961 7738172 -136048283 - L1MC3 LINE L1 -503 7282 7076 233 200 0 0 chr12 7739221 7739261 -136047194 - Charlie8 DNA MER1_type -1020 1397 1358 272 200 31 0 chr12 7739338 7739403 -136047052 - Charlie8 DNA MER1_type -1922 495 429 2384 77 0 0 chr12 7739403 7739702 -136046753 - AluSx SINE Alu -13 299 1 2418 165 44 2 chr12 7739703 7740110 -136046345 - MSTB LTR MaLR -2 424 1 1114 103 33 27 chr12 7740110 7740294 -136046161 + L1PA16 LINE L1 5981 6165 -1 435 270 56 8 chr12 7740651 7740777 -136045678 + L2 LINE L2 3141 3272 0 718 228 220 20 chr12 7741249 7741499 -136044956 + MLT1J1 LTR MaLR 1 300 -146 706 177 0 15 chr12 7741570 7741700 -136044755 + FLAM_C SINE Alu 4 131 -2 608 245 211 56 chr12 7742112 7742435 -136044020 - MLT1G LTR MaLR -10 585 213 240 111 0 0 chr12 7742447 7742483 -136043972 + (TTCCC)n Simple_repeat Simple_repeat 2 37 0 2011 102 14 0 chr12 7742483 7742766 -136043689 - AluY SINE Alu -4 307 21 1078 104 7 7 chr12 7742767 7742921 -136043534 - AluSq SINE Alu -159 154 1 222 91 0 0 chr12 7742942 7742975 -136043480 + (TCTCC)n Simple_repeat Simple_repeat 5 37 0 659 201 32 39 chr12 7742996 7743150 -136043305 - MLT1G LTR MaLR -420 170 18 2352 58 0 16 chr12 7743150 7743460 -136042995 - AluY SINE Alu -6 305 1 19414 174 34 15 chr12 7743468 7743958 -136042497 - L1PA13 LINE L1 -1 6865 6386 1974 108 7 3 chr12 7743958 7744253 -136042202 - AluSq SINE Alu -17 296 1 19414 174 34 15 chr12 7744253 7744379 -136042076 - L1PA13 LINE L1 -480 6386 6264 1718 157 3 23 chr12 7744379 7744684 -136041771 - AluSx SINE Alu -13 299 1 19414 174 34 15 chr12 7744684 7748299 -136038156 - L1PA13 LINE L1 -602 6264 2720 2625 42 0 0 chr12 7748299 7748610 -136037845 + AluY SINE Alu 1 311 0 19414 174 34 15 chr12 7748610 7749111 -136037344 - L1PA13 LINE L1 -4146 2720 2230 1882 167 3 0 chr12 7749111 7749422 -136037033 - AluSx SINE Alu 0 312 1 19414 174 34 15 chr12 7749422 7749735 -136036720 - L1PA13 LINE L1 -4636 2230 1736 537 152 11 0 chr12 7749847 7749939 -136036516 + L1PA12 LINE L1 103 195 -7386 1767 163 10 0 chr12 7750344 7750633 -136035822 - AluJb SINE Alu -20 292 1 1795 159 0 23 chr12 7751327 7751635 -136034820 - AluJo SINE Alu -11 301 1 1463 137 60 12 chr12 7751661 7751910 -136034545 - AluJo SINE Alu -50 262 2 568 237 30 106 chr12 7752154 7752352 -136034103 - MIR SINE MIR -13 249 67 815 255 102 91 chr12 7752420 7752800 -136033655 - LTR67 LTR ERVL 0 557 168 2415 155 73 140 chr12 7752800 7753579 -136032876 + LTR8A LTR ERV1 1 727 0 815 255 102 91 chr12 7753579 7753727 -136032728 - LTR67 LTR ERVL -389 168 23 264 354 19 21 chr12 7753863 7754119 -136032336 - MIR SINE MIR -19 243 23 289 196 36 0 chr12 7754183 7754239 -136032216 + MER46C DNA MER2_type 6 63 -275 851 146 95 0 chr12 7754242 7754400 -136032055 - AluJb SINE Alu -22 290 118 764 222 73 69 chr12 7754402 7754677 -136031778 + MER46C DNA MER2_type 58 333 -5 1800 144 3 7 chr12 7756471 7756770 -136029685 + AluJo SINE Alu 1 298 -14 384 299 94 35 chr12 7757764 7757965 -136028490 - MIR SINE MIR -1 261 49 1639 152 0 31 chr12 7758226 7758515 -136027940 + AluSx SINE Alu 1 280 -32 21 36 0 0 chr12 7758993 7759021 -136027434 + AT_rich Low_complexity Low_complexity 1 28 0 999 159 75 31 chr12 7759027 7759254 -136027201 - L1PB2 LINE L1 0 6151 5915 1530 184 0 46 chr12 7759848 7760153 -136026302 - AluJo SINE Alu -21 291 1 604 183 7 58 chr12 7760532 7760669 -136025786 + FLAM_A SINE Alu 2 131 -2 236 333 35 0 chr12 7762446 7762533 -136023922 - L3 LINE CR1 -27 1550 1461 396 296 99 29 chr12 7763510 7763682 -136022773 - MIR SINE MIR -57 205 22 321 118 0 0 chr12 7765766 7765817 -136020638 + (A)n Simple_repeat Simple_repeat 1 51 0 1135 143 5 21 chr12 7765840 7766029 -136020426 + AluJo SINE Alu 12 197 -115 395 279 43 57 chr12 7966097 7966237 -135820218 + L2 LINE L2 3176 3313 0 465 224 52 9 chr12 7966603 7966719 -135819736 - MLT1I LTR MaLR 0 409 289 299 230 14 14 chr12 7966795 7966869 -135819586 - MLT1J2 LTR MaLR -277 173 100 2158 95 95 104 chr12 7966900 7967332 -135819123 + MSTA LTR MaLR 1 428 0 328 62 31 47 chr12 7967405 7967469 -135818986 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 780 255 0 0 chr12 7967488 7967645 -135818810 - AluJb SINE Alu -20 292 136 342 310 64 32 chr12 7967785 7967972 -135818483 + MIR SINE MIR 65 257 -5 2111 124 0 0 chr12 7968342 7968624 -135817831 - AluSx SINE Alu -2 310 29 814 212 18 12 chr12 7968637 7968807 -135817648 + MER5B DNA MER1_type 8 178 0 1160 284 167 7 chr12 7968809 7969245 -135817210 + L2 LINE L2 2804 3309 -4 449 263 127 0 chr12 7969612 7969730 -135816725 + MIR SINE MIR 28 160 -102 216 335 82 6 chr12 7969916 7970074 -135816381 + L2 LINE L2 1555 1724 -1590 1298 177 9 0 chr12 7970119 7970345 -135816110 - AluJo SINE Alu 0 312 85 776 348 71 40 chr12 7970351 7970932 -135815523 + L2 LINE L2 1774 2372 -942 431 295 8 8 chr12 7970937 7971059 -135815396 + L2 LINE L2 3191 3312 -1 364 273 84 35 chr12 7971253 7971396 -135815059 + MIR SINE MIR 105 254 -8 282 271 124 40 chr12 7971675 7971839 -135814616 - MIR SINE MIR -56 206 30 403 256 176 47 chr12 7972451 7972808 -135813647 - L1MC5 LINE L1 -144 7898 7522 266 256 49 0 chr12 7972856 7972938 -135813517 + L1ME LINE L1 5510 5595 -526 516 279 294 0 chr12 7972969 7973285 -135813170 - L1MC4 LINE L1 -548 7494 7086 42445 41 5 1 chr12 7973380 7979512 -135806943 - L1PA2 LINE L1 0 6155 4 1070 252 39 19 chr12 7979523 7979868 -135806587 - L1MC4 LINE L1 -884 6924 6565 36 0 0 0 chr12 7979868 7979904 -135806551 + AT_rich Low_complexity Low_complexity 1 36 0 432 249 73 4 chr12 7979904 7980075 -135806380 - L1MC4 LINE L1 -784 5362 5211 1211 232 61 7 chr12 7980256 7980566 -135805889 - MER46C DNA MER2_type -10 328 2 2474 100 0 0 chr12 7980611 7980920 -135805535 - AluY SINE Alu 0 311 3 3718 86 125 4 chr12 7981192 7981736 -135804719 - LTR66 LTR ERVL 0 610 1 1729 181 0 14 chr12 7981909 7982215 -135804240 - AluJb SINE Alu 0 312 12 2014 141 0 3 chr12 7982320 7982652 -135803803 - AluSx SINE Alu 0 331 1 2092 115 0 44 chr12 7983246 7983443 -135803012 - AluSx SINE Alu 0 321 141 2505 89 0 3 chr12 7983443 7983756 -135802699 - AluSp SINE Alu -1 312 1 2092 115 0 44 chr12 7983756 7983892 -135802563 - AluSx SINE Alu -180 141 1 621 88 0 0 chr12 7983892 7983983 -135802472 + MER2 DNA MER2_type 120 210 -135 21 0 0 0 chr12 7984006 7984027 -135802428 + AT_rich Low_complexity Low_complexity 1 21 0 452 321 82 25 chr12 7984104 7984422 -135802033 - L2 LINE L2 -1016 2298 1963 200 286 14 54 chr12 7987849 7987996 -135798459 + GA-rich Low_complexity Low_complexity 5 145 0 631 284 68 16 chr12 7990403 7990593 -135795862 + MIR SINE MIR 51 250 -12 297 225 28 0 chr12 7993575 7993646 -135792809 + MIR SINE MIR 43 115 -93 360 0 0 0 chr12 7994189 7994229 -135792226 + (TG)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chr12 7994228 7994255 -135792200 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 237 319 118 21 chr12 7994533 7994677 -135791778 + L2 LINE L2 2328 2485 -829 315 0 0 0 chr12 7994691 7994726 -135791729 + (CA)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr12 7994726 7994750 -135791705 + (CCA)n Simple_repeat Simple_repeat 3 26 0 801 240 112 0 chr12 7994782 7995024 -135791431 + MER33 DNA MER1_type 1 269 -55 294 314 95 45 chr12 7995036 7995158 -135791297 + L2 LINE L2 2511 2626 -688 859 143 8 15 chr12 7995158 7995291 -135791164 - FLAM_C SINE Alu 0 133 2 294 314 95 45 chr12 7995291 7995410 -135791045 + L2 LINE L2 2626 2764 -550 2041 152 0 0 chr12 7996036 7996338 -135790117 + AluSx SINE Alu 1 302 -10 273 98 0 0 chr12 7999124 7999165 -135787290 + (CA)n Simple_repeat Simple_repeat 1 41 0 2274 111 0 7 chr12 8000185 8000491 -135785964 - AluSx SINE Alu 0 312 9 261 139 0 0 chr12 8002304 8002347 -135784108 + (TTC)n Simple_repeat Simple_repeat 3 45 0 687 115 0 0 chr12 8002362 8002458 -135783997 - U6 snRNA snRNA -10 97 2 192 308 0 0 chr12 8002811 8002863 -135783592 + MIR SINE MIR 79 130 -132 2017 211 84 16 chr12 8003853 8004355 -135782100 + MLT1F LTR MaLR 1 536 -6 2239 127 102 13 chr12 8005166 8005559 -135780896 + MSTA LTR MaLR 1 428 0 314 360 131 0 chr12 8006049 8006224 -135780231 - L2 LINE L2 -50 3222 3025 541 226 0 9 chr12 8006313 8006428 -135780027 - MIR SINE MIR -110 152 39 775 216 119 10 chr12 8006449 8006643 -135779812 - MER20 DNA MER1_type -4 215 1 834 292 20 20 chr12 8006688 8006938 -135779517 - MIR SINE MIR -11 251 2 215 329 68 44 chr12 8006987 8007236 -135779219 - L2 LINE L2 -401 2913 2659 457 225 17 67 chr12 8008318 8008438 -135778017 - MER81 DNA DNA 0 114 1 553 178 0 9 chr12 8008552 8008659 -135777796 - Charlie1 DNA MER1_type -33 2728 2623 * 822 219 47 21 chr12 8008646 8008879 -135777576 - Charlie1 DNA MER1_type -2522 239 1 486 288 92 27 chr12 8008879 8008991 -135777464 - L1MEc LINE L1 -4332 2389 2286 2857 143 106 33 chr12 8008991 8009355 -135777100 - MER1A DNA MER1_type -2173 527 116 207 0 0 0 chr12 8009355 8009378 -135777077 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2857 143 106 33 chr12 8009378 8009504 -135776951 - MER1A DNA MER1_type -2584 116 1 486 288 92 27 chr12 8009504 8009686 -135776769 - L1MEc LINE L1 -4435 2286 2076 880 197 0 0 chr12 8009687 8009834 -135776621 - AluJb SINE Alu -27 285 139 719 230 104 49 chr12 8009837 8010166 -135776289 - L1MEc LINE L1 -4529 2011 1682 609 212 9 0 chr12 8010557 8010670 -135775785 - MER81 DNA DNA 0 114 1 24 0 0 0 chr12 8012242 8012266 -135774189 + GC_rich Low_complexity Low_complexity 1 24 0 247 314 88 25 chr12 8013377 8013536 -135772919 + MIR SINE MIR 30 198 -64 243 0 0 0 chr12 8013780 8013807 -135772648 + (A)n Simple_repeat Simple_repeat 1 27 0 1765 296 80 38 chr12 8013993 8014579 -135771876 - L2 LINE L2 -2 3311 2751 2324 84 11 0 chr12 8014579 8014894 -135771561 - AluSc SINE Alu 0 318 1 1765 296 80 38 chr12 8014894 8015476 -135770979 - L2 LINE L2 -562 2751 2091 1541 169 28 0 chr12 8015603 8015857 -135770598 + AluJo SINE Alu 22 282 -30 270 301 0 46 chr12 8017507 8017660 -135768795 + CT-rich Low_complexity Low_complexity 5 150 0 183 80 0 0 chr12 8017661 8017686 -135768769 + (T)n Simple_repeat Simple_repeat 1 25 0 275 319 11 0 chr12 8017697 8017791 -135768664 + CT-rich Low_complexity Low_complexity 1 95 0 401 285 40 75 chr12 8018298 8018498 -135767957 - MIR3 SINE MIR -7 201 9 193 312 21 54 chr12 8018540 8018633 -135767822 + MIR3 SINE MIR 12 101 -107 714 189 137 16 chr12 8018712 8018902 -135767553 + MER58A DNA MER1_type 3 215 -9 2417 72 16 20 chr12 8018903 8019207 -135767248 + AluSg SINE Alu 1 303 -7 309 314 110 8 chr12 8019388 8019506 -135766949 + MIR SINE MIR 133 262 0 255 152 0 0 chr12 8020298 8020344 -135766111 + (TG)n Simple_repeat Simple_repeat 2 47 0 543 381 77 21 chr12 8020504 8021111 -135765344 + L2 LINE L2 2140 2780 -534 722 113 0 0 chr12 8021114 8021211 -135765244 + AluJ/FLAM SINE Alu 2 98 -214 1151 137 0 0 chr12 8021219 8021380 -135765075 + FRAM SINE Alu 15 175 -1 683 258 85 29 chr12 8021983 8022313 -135764142 + L1ME LINE L1 5278 5629 -492 327 222 133 22 chr12 8022371 8022506 -135763949 - L1MC4 LINE L1 -1 8041 7892 4694 231 88 55 chr12 8022648 8024892 -135761563 - L1ME2 LINE L1 -10 6154 3806 2260 94 33 0 chr12 8024892 8025191 -135761264 - AluSc SINE Alu 0 309 1 4694 231 88 55 chr12 8025191 8025689 -135760766 - L1ME2 LINE L1 -2358 3806 3326 2056 112 4 4 chr12 8025694 8025962 -135760493 + AluSp SINE Alu 14 281 -32 531 0 0 0 chr12 8025964 8026023 -135760432 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 305 286 77 11 chr12 8029225 8029316 -135757139 - L2 LINE L2 -14 3258 3162 365 219 134 63 chr12 8029529 8029581 -135756874 - L1ME4a LINE L1 -33 6088 6041 2098 145 10 3 chr12 8029581 8029891 -135756564 + AluJb SINE Alu 1 312 0 365 219 134 63 chr12 8029891 8030076 -135756379 - L1ME4a LINE L1 -80 6041 5834 766 275 45 38 chr12 8030079 8030366 -135756089 + MARNA DNA Mariner 129 417 -169 955 240 33 8 chr12 8030459 8030701 -135755754 - MIR SINE MIR 0 262 15 198 0 0 0 chr12 8030895 8030917 -135755538 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1643 175 41 0 chr12 8030981 8031250 -135755205 - AluJo SINE Alu -30 282 3 416 246 173 11 chr12 8032403 8032538 -135753917 + MER5B DNA MER1_type 17 188 -1 192 40 0 0 chr12 8036229 8036254 -135750201 + (CTGGGG)n Simple_repeat Simple_repeat 2 26 0 249 33 0 0 chr12 8036623 8036653 -135749802 + (TG)n Simple_repeat Simple_repeat 1 30 0 354 336 153 23 chr12 8037604 8038042 -135748413 + L2 LINE L2 2181 2675 -639 342 260 55 0 chr12 8038045 8038180 -135748275 + (CCTG)n Simple_repeat Simple_repeat 1 142 0 444 274 246 28 chr12 8038370 8038728 -135747727 + L2 LINE L2 2827 3262 -10 247 235 204 15 chr12 8041511 8041643 -135744812 + MIR SINE MIR 18 174 -88 189 291 0 18 chr12 8041845 8041900 -135744555 + MIR SINE MIR 1 54 -208 1211 117 0 0 chr12 8042046 8042208 -135744247 - AluSp SINE Alu -18 295 134 2251 87 20 7 chr12 8042209 8042507 -135743948 - AluY SINE Alu -9 302 1 200 100 25 0 chr12 8043536 8043576 -135742879 + (CA)n Simple_repeat Simple_repeat 1 41 0 221 0 35 0 chr12 8043576 8043605 -135742850 + (CAG)n Simple_repeat Simple_repeat 1 30 0 607 173 7 65 chr12 8044766 8044905 -135741550 + FLAM_A SINE Alu 11 141 -1 41 66 0 0 chr12 8044928 8045004 -135741451 + AT_rich Low_complexity Low_complexity 1 76 0 2005 155 0 3 chr12 8045054 8045351 -135741104 + AluJo SINE Alu 1 296 -16 4462 256 102 52 chr12 8045361 8045769 -135740686 - HAL1 LINE L1 -56 2451 2065 216 0 0 0 chr12 8045769 8045793 -135740662 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4462 256 102 52 chr12 8045793 8046954 -135739501 - HAL1 LINE L1 -442 2065 963 2301 97 3 10 chr12 8046954 8047254 -135739201 + AluSx SINE Alu 1 298 -14 4462 256 102 52 chr12 8047254 8047555 -135738900 - HAL1 LINE L1 -1544 963 678 3342 171 36 3 chr12 8047555 8048141 -135738314 - MER6A DNA MER2_type 0 605 1 4462 256 102 52 chr12 8048141 8048598 -135737857 - HAL1 LINE L1 -1829 678 6 467 219 67 0 chr12 8048832 8048937 -135737518 + L2 LINE L2 3161 3272 0 320 287 74 25 chr12 8049089 8049211 -135737244 - MIR SINE MIR -65 143 16 205 228 53 18 chr12 8049649 8049706 -135736749 - L2 LINE L2 -536 2778 2720 350 342 0 27 chr12 8050017 8050128 -135736327 - L2 LINE L2 -17 3255 3148 481 269 45 0 chr12 8050770 8050926 -135735529 - Charlie8 DNA MER1_type -2159 258 96 1314 146 10 5 chr12 8050954 8051159 -135735296 + AluJo SINE Alu 1 206 -106 632 130 19 9 chr12 8051272 8051380 -135735075 - AluSq/x SINE Alu -203 110 2 757 310 98 9 chr12 8051383 8051731 -135734724 - L1MC/D LINE L1 -1984 5824 5446 263 280 67 0 chr12 8051763 8051838 -135734617 - Charlie8 DNA MER1_type -2331 86 7 2155 97 0 94 chr12 8052638 8052979 -135733476 - AluSq SINE Alu -4 309 1 2695 171 88 3 chr12 8052979 8053547 -135732908 - L1MB7 LINE L1 -47 6137 5522 2564 48 0 13 chr12 8053593 8053907 -135732548 - AluY SINE Alu -1 310 1 2119 90 13 13 chr12 8054311 8054610 -135731845 + AluSq SINE Alu 1 299 -14 495 267 47 20 chr12 8056031 8056181 -135730274 - MIR SINE MIR -44 218 65 2269 89 0 14 chr12 8056481 8056774 -135729681 + AluSc SINE Alu 1 289 -20 671 227 0 0 chr12 8057019 8057138 -135729317 + FLAM_A SINE Alu 3 121 -12 213 231 0 0 chr12 8057324 8057376 -135729079 + (TA)n Simple_repeat Simple_repeat 2 53 0 180 0 0 0 chr12 8057889 8057909 -135728546 + (CA)n Simple_repeat Simple_repeat 1 20 0 188 300 54 54 chr12 8058139 8058269 -135728186 + L2 LINE L2 3125 3254 -18 507 278 86 15 chr12 8058409 8058607 -135727848 - L1ME LINE L1 -492 5629 5418 221 138 0 0 chr12 8058653 8058682 -135727773 + (T)n Simple_repeat Simple_repeat 1 29 0 1200 180 38 70 chr12 8059735 8059790 -135726665 - MLT1A1 LTR MaLR 0 365 310 3645 146 4 2 chr12 8059790 8060316 -135726139 + MER1A DNA MER1_type 1 527 0 1200 180 38 70 chr12 8060316 8060576 -135725879 - MLT1A1 LTR MaLR -55 310 60 356 117 17 0 chr12 8060570 8060630 -135725825 + MADE1 DNA Mariner 20 80 0 * 460 110 0 85 chr12 8060630 8060707 -135725748 - MLT1A1 LTR MaLR -304 70 1 25 0 0 0 chr12 8061354 8061379 -135725076 + AT_rich Low_complexity Low_complexity 1 25 0 1395 151 41 50 chr12 8061549 8061692 -135724763 - MER66-int LTR ERV1 -2482 4194 4051 1882 116 0 28 chr12 8061692 8061977 -135724478 - AluSx SINE Alu 0 312 36 1395 151 41 50 chr12 8061977 8062151 -135724304 - MER66-int LTR ERV1 -2625 4051 3880 * 5329 165 29 11 chr12 8062134 8063595 -135722860 + MER66-int LTR ERV1 647 2169 -4507 2797 169 74 16 chr12 8063583 8064151 -135722304 + MER66-int LTR ERV1 2336 2936 -3740 * 5015 223 48 28 chr12 8064406 8065147 -135721308 + MER66-int LTR ERV1 2780 3561 -3115 3946 91 0 8 chr12 8065147 8065662 -135720793 - MER9 LTR ERVK 0 511 1 5015 223 48 28 chr12 8065662 8066259 -135720196 + MER66-int LTR ERV1 3561 4145 -2531 1050 168 19 0 chr12 8066293 8066454 -135720001 - FRAM SINE Alu -11 165 2 336 246 36 87 chr12 8066692 8066830 -135719625 + HAL1b LINE L1 652 782 -566 2938 139 60 24 chr12 8067123 8067657 -135718798 - L1MC/D LINE L1 -537 5807 5255 2282 146 0 36 chr12 8067662 8068074 -135718381 - L1MC2 LINE L1 -123 6221 5825 447 152 0 0 chr12 8068078 8068157 -135718298 + CT-rich Low_complexity Low_complexity 4 82 0 719 135 75 23 chr12 8068160 8068293 -135718162 + MER74A LTR ERVL 419 558 0 334 230 46 23 chr12 8068297 8068384 -135718071 - L2 LINE L2 -32 3281 3193 6043 137 54 7 chr12 8069337 8070441 -135716014 - L1MC1 LINE L1 0 6333 5181 181 245 82 51 chr12 8070783 8070881 -135715574 - MIR3 SINE MIR -9 199 99 1205 196 68 0 chr12 8070961 8071227 -135715228 - L1MDa LINE L1 -4368 2172 1889 381 220 11 11 chr12 8071230 8071321 -135715134 + MLT1D LTR MaLR 9 99 -406 544 197 0 8 chr12 8071331 8071453 -135715002 - L1M4 LINE L1 -825 5321 5201 255 170 0 0 chr12 8071453 8071500 -135714955 - MLT1D LTR MaLR -9 496 450 1101 213 32 29 chr12 8071578 8071855 -135714600 + MLT1D LTR MaLR 111 388 -117 2625 188 9 0 chr12 8071868 8072332 -135714123 - L1MDa LINE L1 -6052 488 21 477 0 0 0 chr12 8072343 8072396 -135714059 + (CA)n Simple_repeat Simple_repeat 2 54 0 1832 122 42 96 chr12 8072624 8072958 -135713497 + MLT1A1 LTR MaLR 1 313 -52 2263 108 10 0 chr12 8072958 8073263 -135713192 - AluSx SINE Alu 0 312 5 1832 122 42 96 chr12 8073263 8073314 -135713141 + MLT1A1 LTR MaLR 313 365 0 1057 153 99 132 chr12 8073767 8074118 -135712337 - MSTD LTR MaLR 0 396 1 2416 103 0 3 chr12 8074177 8074487 -135711968 + AluSp SINE Alu 1 309 -4 1941 136 7 33 chr12 8074566 8074867 -135711588 + AluSx SINE Alu 1 293 -19 3312 138 46 4 chr12 8075209 8075711 -135710744 + LTR17 LTR ERV1 256 778 -2 4995 94 9 29 chr12 8075713 8076414 -135710041 + HERV17 LTR ERV1 2 688 -7938 9578 61 4 5 chr12 8076871 8078035 -135708420 + HERV17 LTR ERV1 1535 2697 -5929 11747 63 11 22 chr12 8078171 8079671 -135706784 + HERV17 LTR ERV1 3096 4578 -4048 589 28 0 0 chr12 8079659 8079730 -135706725 + HERV17 LTR ERV1 7478 7548 -1078 * 2310 59 21 3 chr12 8079720 8080007 -135706448 + HERV17 LTR ERV1 8335 8626 0 2421 94 0 9 chr12 8080007 8080336 -135706119 + LTR17 LTR ERV1 1 326 -454 183 80 0 0 chr12 8080336 8080361 -135706094 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 274 196 0 0 chr12 8080560 8080611 -135705844 + MIR SINE MIR 3 53 -209 1394 175 36 62 chr12 8080629 8080684 -135705771 + MER58B DNA MER1_type 37 92 -2328 1911 144 18 0 chr12 8080684 8080969 -135705486 + AluSx SINE Alu 1 290 -22 1394 175 36 62 chr12 8080969 8081222 -135705233 + MER58B DNA MER1_type 92 337 -4 889 203 43 0 chr12 8081225 8081412 -135705043 + MIR SINE MIR 46 240 -22 29 0 0 0 chr12 8081466 8081495 -135704960 + AT_rich Low_complexity Low_complexity 1 29 0 266 314 116 0 chr12 8081787 8081908 -135704547 + MIR SINE MIR 128 262 0 214 220 51 0 chr12 8083090 8083149 -135703306 - MIR SINE MIR -62 146 85 204 274 12 24 chr12 8083627 8083711 -135702744 + G-rich Low_complexity Low_complexity 1 83 0 195 161 0 0 chr12 8084585 8084616 -135701839 - MIR SINE MIR -65 143 113 604 307 35 8 chr12 8085945 8086199 -135700256 - MIR SINE MIR -1 261 1 381 313 73 28 chr12 8086853 8087032 -135699423 - MIR SINE MIR -45 217 31 2068 128 20 0 chr12 8087033 8087331 -135699124 - AluSx SINE Alu -8 304 1 1204 220 32 16 chr12 8088067 8088376 -135698079 - L1MD2 LINE L1 -1 6358 6024 423 392 0 0 chr12 8088756 8088904 -135697551 - MIR SINE MIR -107 155 8 197 167 60 30 chr12 8089812 8089980 -135696475 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 344 162 45 45 chr12 8089995 8090231 -135696224 + (TA)n Simple_repeat Simple_repeat 1 236 0 300 149 21 129 chr12 8090236 8090430 -135696025 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 253 170 16 129 chr12 8090444 8090638 -135695817 + (TATAA)n Simple_repeat Simple_repeat 5 176 0 * 259 222 62 25 chr12 8090590 8090752 -135695703 + (CATATA)n Simple_repeat Simple_repeat 3 170 0 * 391 150 39 61 chr12 8090664 8090844 -135695611 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 232 184 67 21 chr12 8090861 8091151 -135695304 + (TATAA)n Simple_repeat Simple_repeat 1 303 0 6965 50 13 52 chr12 8092242 8093935 -135692520 - SVA Other Other -683 1384 34 252 0 0 0 chr12 8093939 8093967 -135692488 + (GGGAGA)n Simple_repeat Simple_repeat 6 33 0 524 224 86 9 chr12 8094036 8094152 -135692303 + FLAM_A SINE Alu 4 128 -14 492 242 22 11 chr12 8094191 8094369 -135692086 + (CATA)n Simple_repeat Simple_repeat 1 180 0 2098 122 3 7 chr12 8095910 8096204 -135690251 + AluSp SINE Alu 1 293 -20 378 61 0 0 chr12 8096217 8096266 -135690189 + (CACTG)n Simple_repeat Simple_repeat 4 52 0 388 293 26 17 chr12 8096266 8096382 -135690073 + MER5A DNA MER1_type 73 189 0 1186 214 69 33 chr12 8097869 8098172 -135688283 + L1 LINE L1 4788 5101 -1045 1604 164 96 3 chr12 8099195 8099507 -135686948 + MER58B DNA MER1_type 1 341 0 740 183 0 30 chr12 8102274 8102405 -135684050 + FLAM_A SINE Alu 1 127 -6 2332 107 3 0 chr12 8104991 8105300 -135681155 - AluSp SINE Alu -3 310 1 635 168 35 0 chr12 8105344 8105457 -135680998 - FLAM_C SINE Alu -25 118 2 224 24 0 95 chr12 8105500 8105542 -135680913 + (A)n Simple_repeat Simple_repeat 1 38 0 2334 82 74 10 chr12 8105839 8106242 -135680213 + L1PA3 LINE L1 5724 6152 -3 5165 133 37 2 chr12 8106600 8107419 -135679036 + L1PA16 LINE L1 5320 6166 0 37 39 0 0 chr12 8107440 8107491 -135678964 + AT_rich Low_complexity Low_complexity 1 51 0 2437 75 0 0 chr12 8107491 8107783 -135678672 - AluSq SINE Alu -21 292 1 551 240 141 32 chr12 8108782 8109124 -135677331 - MLT1F LTR MaLR 0 542 100 396 173 0 91 chr12 8109555 8109665 -135676790 - MLT1F LTR MaLR -409 140 41 3127 107 22 6 chr12 8110569 8111057 -135675398 - L1MA3 LINE L1 0 6305 5810 469 302 107 13 chr12 8111455 8111680 -135674775 + MIR SINE MIR 17 262 0 1706 289 59 12 chr12 8111718 8112281 -135674174 + ERVL LTR ERVL 3576 4164 -1600 * 2043 294 23 14 chr12 8112274 8112924 -135673531 + ERVL LTR ERVL 4338 4993 -771 2167 104 0 10 chr12 8113748 8114037 -135672418 - AluSq SINE Alu -27 286 1 1111 240 20 20 chr12 8114292 8114538 -135671917 + MER69 DNA AcHobo 1 246 -980 428 214 45 0 chr12 8114533 8114622 -135671833 + MER69 DNA AcHobo 2434 2526 0 * 1965 122 11 7 chr12 8114766 8115052 -135671403 - AluSx SINE Alu -25 287 1 726 267 35 70 chr12 8115577 8115892 -135670563 - MLT1I LTR MaLR 0 409 106 327 333 82 6 chr12 8116216 8116375 -135670080 - L2 LINE L2 0 3313 3143 201 278 66 93 chr12 8116556 8116707 -135669748 - MIR SINE MIR -114 148 2 241 26 53 0 chr12 8117078 8117116 -135669339 + (TTA)n Simple_repeat Simple_repeat 3 42 0 7762 32 8 2 chr12 8117116 8118839 -135667616 - L1PA5 LINE L1 -18 6136 4405 809 149 0 0 chr12 8119889 8120010 -135666445 + FLAM_C SINE Alu 1 121 -12 5976 66 1 0 chr12 8120944 8121760 -135664695 - L1P LINE L1 -881 5265 4449 727 376 112 24 chr12 8121764 8122212 -135664243 - L2 LINE L2 -1922 1392 985 1180 217 151 30 chr12 8122212 8122384 -135664071 - MLT1A2 LTR MaLR 0 374 224 1341 224 3 33 chr12 8122384 8122687 -135663768 - AluJo SINE Alu -17 295 2 1180 217 151 30 chr12 8122687 8122846 -135663609 - MLT1A2 LTR MaLR -150 224 3 727 376 112 24 chr12 8122846 8123462 -135662993 - L2 LINE L2 -2329 985 235 258 261 0 0 chr12 8124575 8124640 -135661815 - MLT1K LTR MaLR 0 588 524 773 162 8 0 chr12 8125279 8125396 -135661059 + FLAM_C SINE Alu 1 118 -15 21 0 0 0 chr12 8125401 8125422 -135661033 + AT_rich Low_complexity Low_complexity 1 21 0 323 329 138 0 chr12 8125476 8125643 -135660812 - L2 LINE L2 -151 3121 2932 325 265 0 29 chr12 8126247 8126349 -135660106 - L1MC5 LINE L1 -50 7911 7813 1119 216 72 61 chr12 8126381 8126937 -135659518 - L1MC5 LINE L1 -214 7747 7186 363 294 169 22 chr12 8127887 8128118 -135658337 - L1M4 LINE L1 -2196 3950 3686 963 169 71 83 chr12 8128219 8128488 -135657967 + L1 LINE L1 3221 3487 -2659 2183 110 7 13 chr12 8128488 8128798 -135657657 + AluSx SINE Alu 4 311 -1 963 169 71 83 chr12 8128798 8128866 -135657589 + L1 LINE L1 3487 3554 -2592 * 2385 156 13 61 chr12 8128860 8129400 -135657055 + L1 LINE L1 3866 4379 -1767 2008 134 10 0 chr12 8129403 8129695 -135656760 + AluSx SINE Alu 1 295 -17 956 188 33 62 chr12 8129699 8129971 -135656484 + L1MA9 LINE L1 5946 6209 -125 2492 233 34 39 chr12 8130055 8130956 -135655499 + L1M4 LINE L1 3502 4398 -1748 290 293 105 44 chr12 8130975 8131204 -135655251 + MARNA DNA Mariner 254 496 -90 511 280 97 24 chr12 8131529 8131736 -135654719 - MIR SINE MIR -27 235 14 539 262 92 44 chr12 8132148 8132235 -135654220 - L1MC4 LINE L1 -40 8002 7921 2336 100 0 0 chr12 8132235 8132535 -135653920 - AluSx SINE Alu -12 300 1 539 262 92 44 chr12 8132535 8132836 -135653619 - L1MC4 LINE L1 -121 7921 7595 1725 171 3 26 chr12 8133018 8133327 -135653128 + AluJb SINE Alu 1 302 -10 262 217 68 62 chr12 8133476 8133637 -135652818 - L1ME4a LINE L1 -4 6117 5956 2085 104 3 17 chr12 8133729 8134028 -135652427 - AluSg SINE Alu -15 295 1 239 327 36 12 chr12 8134036 8134204 -135652251 - L1ME4a LINE L1 -296 5825 5654 22 0 0 0 chr12 8134236 8134258 -135652197 + AT_rich Low_complexity Low_complexity 1 22 0 283 291 9 45 chr12 8134786 8134896 -135651559 - MIR SINE MIR -33 229 124 404 223 81 5 chr12 8135546 8135690 -135650765 - L1ME3 LINE L1 -1 6163 6009 1160 205 63 22 chr12 8136130 8136407 -135650048 - L1ME3 LINE L1 -167 5995 5702 1568 230 43 77 chr12 8136407 8137041 -135649414 + LTR9 LTR ERV1 1 612 0 1160 205 63 22 chr12 8137041 8137080 -135649375 - L1ME3 LINE L1 -460 5702 5666 992 128 0 0 chr12 8238850 8238991 -135547464 + AluSg/x SINE Alu 152 292 -18 2180 82 44 3 chr12 8238994 8239310 -135547145 - MER4E LTR ERV1 -316 450 122 1995 121 6 13 chr12 8239352 8239488 -135546967 + AluSq SINE Alu 1 136 -177 2145 112 0 0 chr12 8239488 8239791 -135546664 + AluSp SINE Alu 1 303 -10 1995 121 6 13 chr12 8239791 8239968 -135546487 + AluSq SINE Alu 136 312 -1 2024 148 0 0 chr12 8239977 8240287 -135546168 + AluSx SINE Alu 1 310 -2 1980 125 4 0 chr12 8240287 8240602 -135545853 + AluSx SINE Alu 3 318 0 411 265 34 17 chr12 8240602 8240719 -135545736 - L1M4 LINE L1 -1289 4857 4739 2339 68 0 0 chr12 8240719 8241026 -135545429 - AluY SINE Alu -4 307 1 2016 99 14 10 chr12 8241032 8241326 -135545129 - AluSq SINE Alu -18 295 1 1279 150 40 0 chr12 8241329 8241556 -135544899 - L1MB2 LINE L1 -286 5885 5650 1657 175 16 10 chr12 8241556 8241865 -135544590 - AluJo SINE Alu -1 311 1 606 213 25 8 chr12 8241873 8241995 -135544460 + FRAM SINE Alu 24 147 -29 183 129 0 0 chr12 8242177 8242208 -135544247 + (TG)n Simple_repeat Simple_repeat 2 32 0 268 144 0 24 chr12 8242319 8242369 -135544086 - Alu SINE Alu -261 39 1 2123 71 60 0 chr12 8242682 8242965 -135543490 + AluSx SINE Alu 1 300 -12 820 188 12 0 chr12 8242965 8243125 -135543330 + AluSg/x SINE Alu 134 295 -17 186 71 0 0 chr12 8243241 8243269 -135543186 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2492 44 0 0 chr12 8243314 8243612 -135542843 + AluY SINE Alu 1 298 -13 199 244 0 139 chr12 8243679 8243707 -135542748 - L2 LINE L2 -582 2732 2702 1304 178 36 39 chr12 8243707 8244016 -135542439 - AluJo SINE Alu -4 308 1 199 244 0 139 chr12 8244016 8244073 -135542382 - L2 LINE L2 -612 2702 2659 2047 124 7 0 chr12 8244599 8244905 -135541550 - AluSx SINE Alu 0 312 5 1991 108 7 0 chr12 8245163 8245451 -135541004 + AluSx SINE Alu 1 290 -22 255 173 0 0 chr12 8245665 8245717 -135540738 + (TATG)n Simple_repeat Simple_repeat 1 52 0 1515 150 14 38 chr12 8245723 8246010 -135540445 - AluJo SINE Alu -12 300 21 1046 106 0 0 chr12 8246030 8246172 -135540283 + AluSg/x SINE Alu 121 262 -50 1063 191 76 142 chr12 8246242 8246713 -135539742 - MER31B LTR ERV1 -20 446 7 1186 151 82 58 chr12 8247005 8247037 -135539418 - AluJb SINE Alu -1 311 281 477 0 0 0 chr12 8247037 8247090 -135539365 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1186 151 82 58 chr12 8247090 8247348 -135539107 - AluJb SINE Alu -31 281 14 508 173 71 39 chr12 8247383 8247510 -135538945 - FLAM_A SINE Alu -2 131 1 256 93 0 0 chr12 8247540 8247583 -135538872 - HY3 scRNA scRNA -2 99 57 2061 126 3 0 chr12 8247611 8247912 -135538543 + AluSg SINE Alu 2 303 -7 2100 101 0 20 chr12 8247914 8248244 -135538211 + AluSp SINE Alu 3 313 0 1118 206 79 115 chr12 8248337 8248602 -135537853 + MER39 LTR ERV1 1 274 -433 591 194 0 72 chr12 8248602 8248741 -135537714 - FLAM_A SINE Alu 0 133 5 1118 206 79 115 chr12 8248741 8248926 -135537529 + MER39 LTR ERV1 274 464 -243 2313 82 0 0 chr12 8248926 8249229 -135537226 - AluSc SINE Alu -2 307 5 1118 206 79 115 chr12 8249229 8249299 -135537156 + MER39 LTR ERV1 464 688 -19 762 68 0 0 chr12 8249726 8249829 -135536626 - AluSp/q SINE Alu -3 310 208 1288 141 0 134 chr12 8249830 8249932 -135536523 + AluJb SINE Alu 43 157 -155 207 0 0 0 chr12 8249932 8249955 -135536500 + (TA)n Simple_repeat Simple_repeat 2 24 0 1288 141 0 134 chr12 8249955 8250150 -135536305 + AluJb SINE Alu 157 300 -12 22 0 0 0 chr12 8250179 8250201 -135536254 + AT_rich Low_complexity Low_complexity 1 22 0 2119 128 0 0 chr12 8250309 8250607 -135535848 + AluSg SINE Alu 1 298 -12 279 311 113 0 chr12 8250610 8250716 -135535739 + L2 LINE L2 3191 3308 -5 360 160 0 55 chr12 8250843 8250921 -135535534 + AluS SINE Alu 1 57 -251 1605 159 45 3 chr12 8250949 8251238 -135535217 + AluJb SINE Alu 1 301 -11 2212 75 7 3 chr12 8251585 8251890 -135534565 + AluSg SINE Alu 1 306 -4 2369 49 0 33 chr12 8251989 8252294 -135534161 - AluY SINE Alu -14 297 3 1116 165 40 0 chr12 8252300 8252524 -135533931 - L1PA13 LINE L1 0 6163 5931 301 325 0 0 chr12 8252885 8252965 -135533490 + L1ME LINE L1 5740 5819 -302 1680 131 4 0 chr12 8252981 8253240 -135533215 + AluSx SINE Alu 1 260 -52 329 170 0 0 chr12 8253513 8253566 -135532889 + Alu SINE Alu 1 53 -249 2003 113 10 3 chr12 8253584 8253875 -135532580 - AluSc SINE Alu -16 293 1 412 261 153 25 chr12 8253934 8254091 -135532364 + MIR SINE MIR 79 255 -7 2514 37 3 0 chr12 8255333 8255630 -135530825 + AluY SINE Alu 3 300 -11 1028 181 43 0 chr12 8255674 8255884 -135530571 + Charlie4a DNA MER1_type 25 243 -265 822 163 0 0 chr12 8255888 8256029 -135530426 + FLAM_C SINE Alu 3 143 0 692 159 24 111 chr12 8256049 8256187 -135530268 + Charlie4a DNA MER1_type 228 336 -1625 2391 77 0 0 chr12 8256187 8256498 -135529957 + AluY SINE Alu 1 311 0 692 159 24 111 chr12 8256498 8256611 -135529844 + Charlie4a DNA MER1_type 336 457 -51 1972 100 20 20 chr12 8256612 8256912 -135529543 + AluSp SINE Alu 1 300 -13 572 204 14 78 chr12 8257144 8257286 -135529169 - FLAM_A SINE Alu -1 141 9 2032 100 7 3 chr12 8257528 8257819 -135528636 + AluSc SINE Alu 2 293 -16 329 170 0 0 chr12 8257837 8257890 -135528565 - Alu SINE Alu -249 53 1 2117 96 0 35 chr12 8257971 8258140 -135528315 - AluSx SINE Alu -10 302 147 2159 105 3 0 chr12 8258140 8258436 -135528019 - AluSp SINE Alu -15 298 2 2117 96 0 35 chr12 8258436 8258579 -135527876 - AluSx SINE Alu -165 147 1 275 313 62 20 chr12 8258591 8258786 -135527669 - L1ME LINE L1 -304 5817 5615 1570 181 0 0 chr12 8258891 8259157 -135527298 + AluJo SINE Alu 3 268 -44 25 65 0 0 chr12 8259176 8259222 -135527233 + AT_rich Low_complexity Low_complexity 1 46 0 21 71 0 0 chr12 8259308 8259350 -135527105 + AT_rich Low_complexity Low_complexity 1 42 0 1780 116 4 11 chr12 8259397 8259664 -135526791 - AluSp SINE Alu -48 265 1 389 223 0 0 chr12 8259751 8259829 -135526626 - AluJ/FRAM SINE Alu -15 287 216 192 97 0 0 chr12 8260036 8260067 -135526388 + (T)n Simple_repeat Simple_repeat 1 31 0 24 0 0 0 chr12 8260639 8260663 -135525792 + AT_rich Low_complexity Low_complexity 1 24 0 1342 211 16 20 chr12 8261036 8261340 -135525115 - AluSp SINE Alu 0 303 1 1829 150 3 0 chr12 8261356 8261643 -135524812 - AluSq SINE Alu -25 288 1 523 89 13 13 chr12 8262111 8262190 -135524265 + AluY SINE Alu 5 83 -228 1818 96 0 116 chr12 8262330 8262674 -135523781 + AluSx SINE Alu 1 304 -8 417 151 82 0 chr12 8262937 8263010 -135523445 + AluJ/FLAM SINE Alu 2 80 -232 704 154 46 23 chr12 8263172 8263302 -135523153 + AluJo/FLAM SINE Alu 1 133 -169 1687 100 25 0 chr12 8263305 8263546 -135522909 + AluSx SINE Alu 1 247 -65 1776 135 10 0 chr12 8263690 8263978 -135522477 + AluSx SINE Alu 15 305 -7 1198 279 71 16 chr12 8263979 8264449 -135522006 + MLT1D LTR MaLR 8 503 -2 1172 157 4 0 chr12 8264838 8265661 -135520794 - ALR/Alpha Satellite centromeric 0 826 1 1094 162 7 0 chr12 8265674 8266308 -135520147 - ALR/Alpha Satellite centromeric 0 638 1 2509 53 0 0 chr12 8266708 8267011 -135519444 - AluY SINE Alu -6 305 3 1001 130 0 0 chr12 8267333 8267471 -135518984 + AluSq/x SINE Alu 1 138 -175 1978 117 4 0 chr12 8267487 8267768 -135518687 + AluSx SINE Alu 21 302 -10 2037 110 0 17 chr12 8268175 8268310 -135518145 + AluSg SINE Alu 1 137 -173 1944 129 3 7 chr12 8268310 8268446 -135518009 + AluSg SINE Alu 1 135 -175 1316 170 19 99 chr12 8268446 8268769 -135517686 + AluJb SINE Alu 2 298 -4 2037 110 0 17 chr12 8268604 8268769 -135517686 + AluSg SINE Alu 137 296 -14 1619 104 7 100 chr12 8268770 8268915 -135517540 + AluSq SINE Alu 1 158 -155 2449 47 0 3 chr12 8268915 8269214 -135517241 + AluY SINE Alu 1 298 -13 1619 104 7 100 chr12 8269214 8269227 -135517228 + AluSq SINE Alu 158 171 -142 2173 99 0 10 chr12 8269227 8269539 -135516916 + AluY SINE Alu 3 311 0 1619 104 7 100 chr12 8269539 8269688 -135516767 + AluSq SINE Alu 171 280 -33 485 92 0 0 chr12 8269720 8269785 -135516670 - AluJ/FLAM SINE Alu -247 65 1 2344 86 0 0 chr12 8270044 8270345 -135516110 + AluY SINE Alu 1 301 -10 312 267 38 86 chr12 8270395 8270569 -135515886 - MIR SINE MIR -14 194 32 288 0 0 0 chr12 8270804 8270836 -135515619 + (TG)n Simple_repeat Simple_repeat 1 32 0 1914 128 3 22 chr12 8270898 8271211 -135515244 + AluSq SINE Alu 1 307 -6 277 290 0 0 chr12 8271216 8271285 -135515170 - MIR SINE MIR -74 188 120 362 25 0 0 chr12 8271286 8271326 -135515129 - tRNA-Thr-ACA tRNA tRNA -36 40 1 226 239 69 28 chr12 8271332 8271425 -135515030 - MIR SINE MIR -80 128 32 2160 84 7 23 chr12 8271631 8271940 -135514515 + AluSx SINE Alu 1 304 -8 623 228 16 0 chr12 8272252 8272379 -135514076 - MER5A DNA MER1_type 0 189 61 1718 143 3 14 chr12 8272380 8272667 -135513788 - MER39 LTR ERV1 0 707 424 2113 56 66 3 chr12 8272668 8272954 -135513501 - AluSg SINE Alu -6 304 1 252 0 0 0 chr12 8273067 8273095 -135513360 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2012 104 4 0 chr12 8273098 8273378 -135513077 - AluSq SINE Alu -32 281 1 225 0 0 0 chr12 8273472 8273497 -135512958 + (A)n Simple_repeat Simple_repeat 1 25 0 180 111 0 0 chr12 8273495 8273522 -135512933 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 * 351 291 57 23 chr12 8273763 8273938 -135512517 + L1ME4a LINE L1 5940 6120 -1 1410 155 3 97 chr12 8273948 8274112 -135512343 - AluJo SINE Alu -12 300 122 216 0 0 0 chr12 8274112 8274136 -135512319 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1708 130 0 11 chr12 8274136 8274397 -135512058 - AluSp SINE Alu -21 292 35 1410 155 3 97 chr12 8274397 8274560 -135511895 - AluJo SINE Alu -188 124 3 684 49 0 0 chr12 8274592 8274674 -135511781 - AluS SINE Alu -230 83 2 2023 123 7 3 chr12 8274705 8274998 -135511457 - AluSx SINE Alu -18 294 1 1457 148 15 77 chr12 8275112 8275254 -135511201 + AluSx SINE Alu 1 150 -162 2241 93 0 3 chr12 8275254 8275564 -135510891 + AluSg SINE Alu 1 309 -1 1457 148 15 77 chr12 8275564 8275745 -135510710 + AluSx SINE Alu 150 304 -8 1900 132 0 0 chr12 8275746 8276026 -135510429 + AluSx SINE Alu 1 280 -32 282 29 0 0 chr12 8276027 8276062 -135510393 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 1731 178 0 0 chr12 8276104 8276407 -135510048 + AluJb SINE Alu 1 303 -9 1650 53 31 13 chr12 8276905 8277131 -135509324 - AluY SINE Alu -81 230 1 2174 167 10 15 chr12 8277154 8277508 -135508947 + MLT1A1 LTR MaLR 1 431 -26 2048 109 0 3 chr12 8277508 8277801 -135508654 + AluSx SINE Alu 1 292 -20 2174 167 10 15 chr12 8277801 8277828 -135508627 + MLT1A1 LTR MaLR 431 457 0 23 0 0 0 chr12 8277911 8277934 -135508521 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr12 8277966 8277994 -135508461 + AT_rich Low_complexity Low_complexity 1 28 0 388 192 43 54 chr12 8278174 8278341 -135508114 - AluSx SINE Alu -4 298 235 4049 134 134 37 chr12 8278342 8279485 -135506970 + pTR5 LTR ERV1 290 2295 -143 1515 155 4 0 chr12 8279485 8279724 -135506731 - AluSx SINE Alu -72 240 1 1310 209 112 0 chr12 8279840 8280003 -135506452 - AluJo SINE Alu -4 298 155 213 65 0 0 chr12 8280003 8280034 -135506421 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1310 209 112 0 chr12 8280034 8280138 -135506317 - AluJo SINE Alu -147 155 1 233 233 56 78 chr12 8280261 8280351 -135506104 + MLT1H LTR MaLR 233 320 -229 397 269 92 15 chr12 8280400 8280530 -135505925 + MLT1H LTR MaLR 409 548 -1 1575 191 0 17 chr12 8280578 8280877 -135505578 + AluJo SINE Alu 1 294 -18 1977 121 3 13 chr12 8280878 8281176 -135505279 + AluSp SINE Alu 1 295 -18 1349 206 51 32 chr12 8281245 8281280 -135505175 + LTR53 LTR ERVL 189 222 -297 1870 172 0 3 chr12 8281280 8281588 -135504867 - AluSx SINE Alu -5 307 1 1349 206 51 32 chr12 8281588 8281863 -135504592 + LTR53 LTR ERVL 222 505 -14 2275 79 0 3 chr12 8282322 8282614 -135503841 - AluSc SINE Alu -18 291 1 264 137 0 39 chr12 8282800 8282849 -135503606 + Alu SINE Alu 1 47 -255 508 116 0 0 chr12 8282849 8282918 -135503537 - THE1C LTR MaLR 0 375 307 450 63 0 0 chr12 8282919 8282982 -135503473 - AluSp/q SINE Alu -11 302 240 1689 119 0 0 chr12 8282984 8283227 -135503228 + AluSg/x SINE Alu 67 309 -3 2354 72 7 0 chr12 8283737 8284043 -135502412 + AluSp SINE Alu 1 308 -5 429 233 12 0 chr12 8284076 8284162 -135502293 + FRAM/FAM SINE Alu 1 84 -92 2493 55 3 0 chr12 8284617 8284927 -135501528 - AluY SINE Alu 0 311 1 1419 225 32 42 chr12 8285084 8285128 -135501327 - MLT1A2 LTR MaLR 0 374 331 2302 101 0 0 chr12 8285128 8285436 -135501019 + AluSx SINE Alu 1 308 -4 1419 225 32 42 chr12 8285436 8285769 -135500686 - MLT1A2 LTR MaLR -43 331 1 1808 125 34 3 chr12 8285953 8286248 -135500207 + AluJo SINE Alu 1 304 -8 2082 150 52 86 chr12 8286625 8287066 -135499389 + MSTB LTR MaLR 1 426 0 1989 46 102 25 chr12 8287199 8287484 -135498971 + AluY SINE Alu 1 307 -4 371 201 84 123 chr12 8287715 8287894 -135498561 - L2 LINE L2 -10 3303 3132 2038 100 4 7 chr12 8288003 8288331 -135498124 - AluSg SINE Alu 0 329 3 2132 114 7 0 chr12 8288333 8288630 -135497825 - AluSx SINE Alu -13 299 1 1841 141 0 36 chr12 8288644 8288830 -135497625 - AluSq SINE Alu 0 313 148 1956 103 39 3 chr12 8288830 8289112 -135497343 - AluSx SINE Alu -20 292 1 1841 141 0 36 chr12 8289112 8289255 -135497200 - AluSq SINE Alu -165 148 1 210 247 65 32 chr12 8289502 8289595 -135496860 + L2 LINE L2 2239 2334 -980 673 174 0 43 chr12 8289595 8289733 -135496722 + AluJo/FLAM SINE Alu 1 132 -170 1238 62 74 0 chr12 8289735 8289911 -135496544 + AluSg SINE Alu 3 191 -119 2264 117 53 91 chr12 8290029 8290189 -135496266 - Tigger1 DNA MER2_type -1983 435 271 2281 87 0 6 chr12 8290189 8290500 -135495955 - AluSc SINE Alu 0 309 1 2264 117 53 91 chr12 8290500 8290791 -135495664 - Tigger1 DNA MER2_type -2147 271 1 537 252 38 0 chr12 8290791 8290922 -135495533 - L2 LINE L2 -251 3062 2927 469 224 116 48 chr12 8290950 8291097 -135495358 - MER58B DNA MER1_type -3 338 182 2082 85 4 0 chr12 8291118 8291422 -135495033 + AluY SINE Alu 1 305 0 785 222 26 5 chr12 8291424 8291618 -135494837 + L1M4 LINE L1 5100 5297 -849 2011 117 7 3 chr12 8291640 8291949 -135494506 + AluY SINE Alu 1 310 -1 243 283 116 7 chr12 8291978 8292116 -135494339 + Charlie2a DNA MER1_type 1482 1634 -1228 1249 135 34 10 chr12 8292116 8292323 -135494132 - AluSg/x SINE Alu -10 300 89 3730 169 72 51 chr12 8292323 8293128 -135493327 - LTR12 LTR ERV1 0 826 5 1230 167 27 12 chr12 8293143 8293401 -135493054 - pTR5 LTR ERV1 -1093 1345 1084 329 146 0 0 chr12 8293401 8293449 -135493006 - Alu SINE Alu -243 56 9 2139 106 0 3 chr12 8293464 8293766 -135492689 - AluSg SINE Alu -3 307 7 2043 118 3 0 chr12 8293771 8294075 -135492380 - AluSx SINE Alu -7 305 1 311 300 190 0 chr12 8294170 8294270 -135492185 + MER91A DNA MER1_type 58 176 -20 286 286 57 0 chr12 8294281 8294351 -135492104 + MER91A DNA MER1_type 123 196 0 427 174 43 35 chr12 8294378 8294493 -135491962 + Charlie2 DNA MER1_type 2726 2841 -21 2226 94 3 0 chr12 8294665 8294962 -135491493 + AluSp SINE Alu 2 299 -14 201 374 65 0 chr12 8295780 8295903 -135490552 + L2 LINE L2 2949 3079 -193 780 275 67 20 chr12 8296033 8296331 -135490124 + L2 LINE L2 575 886 -2428 2033 125 0 13 chr12 8296336 8296649 -135489806 - AluSx SINE Alu -3 309 1 1946 181 52 30 chr12 8296649 8296957 -135489498 + L1M4 LINE L1 4845 5168 -978 2224 102 3 0 chr12 8296957 8297260 -135489195 + AluSp SINE Alu 1 304 -9 1946 181 52 30 chr12 8297260 8297414 -135489041 + L1M4 LINE L1 5168 5317 -829 513 309 65 13 chr12 8297418 8297603 -135488852 - L2 LINE L2 -1317 1997 1796 1457 151 4 39 chr12 8297603 8297882 -135488573 - AluSx SINE Alu -11 301 33 513 309 65 13 chr12 8297882 8297926 -135488529 - L2 LINE L2 -1518 1796 1756 779 163 16 0 chr12 8297931 8298060 -135488395 + FLAM_A SINE Alu 1 131 -2 2017 133 3 0 chr12 8298149 8298449 -135488006 - AluSq SINE Alu -12 301 1 2192 85 0 3 chr12 8298471 8298786 -135487669 - AluSc SINE Alu 0 314 1 402 93 0 0 chr12 8298862 8298916 -135487539 + Alu SINE Alu 243 296 -4 580 284 18 30 chr12 8298916 8299085 -135487370 - MER5A DNA MER1_type -16 173 7 508 251 27 53 chr12 8299173 8299280 -135487175 - Charlie2 DNA MER1_type -2602 260 159 1531 184 23 26 chr12 8299280 8299585 -135486870 - 7SLRNA srpRNA srpRNA -15 305 2 508 251 27 53 chr12 8299585 8299664 -135486791 - Charlie2 DNA MER1_type -2703 159 79 26 45 0 45 chr12 8299708 8299774 -135486681 + AT_rich Low_complexity Low_complexity 1 63 0 2153 108 3 0 chr12 8299821 8300128 -135486327 + AluSg SINE Alu 1 308 -2 851 126 0 16 chr12 8300319 8300446 -135486009 + FLAM_C SINE Alu 5 129 -4 2169 102 3 0 chr12 8300648 8300952 -135485503 + AluSg SINE Alu 1 305 -5 1877 99 3 87 chr12 8300957 8301279 -135485176 + AluSp SINE Alu 19 313 0 915 324 35 19 chr12 8301282 8301656 -135484799 - L2 LINE L2 -660 2654 2275 251 121 0 0 chr12 8301657 8301690 -135484765 + U2 snRNA snRNA 1 33 -155 573 273 120 34 chr12 8301736 8302003 -135484452 - L3 LINE CR1 -145 1432 1143 1104 130 12 0 chr12 8302134 8302303 -135484152 - AluSg/x SINE Alu -8 302 132 2107 105 31 0 chr12 8302303 8302597 -135483858 - AluSg SINE Alu -7 303 1 323 241 38 0 chr12 8302927 8303006 -135483449 - L3 LINE CR1 -1081 496 415 982 228 25 0 chr12 8303006 8303203 -135483252 + MER20 DNA MER1_type 1 202 -17 671 121 0 0 chr12 8304938 8305037 -135481418 + HY3 scRNA scRNA 2 100 -1 25 0 0 0 chr12 8305037 8305062 -135481393 + AT_rich Low_complexity Low_complexity 1 25 0 2248 86 0 3 chr12 8305062 8305366 -135481089 + AluSc SINE Alu 1 303 -6 2068 100 0 19 chr12 8305828 8306137 -135480318 - AluSg SINE Alu -7 303 1 1707 162 0 4 chr12 8306260 8306531 -135479924 - AluJb SINE Alu -38 274 5 1879 116 10 3 chr12 8306604 8306898 -135479557 + AluSx SINE Alu 4 299 -13 2367 70 0 3 chr12 8306900 8307199 -135479256 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr12 8307360 8307382 -135479073 + AT_rich Low_complexity Low_complexity 1 22 0 502 151 75 0 chr12 8308375 8308468 -135477987 - HY3 scRNA scRNA -1 100 1 2112 106 3 0 chr12 8308477 8308785 -135477670 - AluSp SINE Alu 0 309 1 391 192 0 0 chr12 8308787 8308860 -135477595 - MER5A DNA MER1_type -115 74 2 304 113 113 19 chr12 8309071 8309124 -135477331 + MER81 DNA DNA 36 93 -21 503 108 0 0 chr12 8309422 8309487 -135476968 + pTR5 LTR ERV1 326 390 -2048 1515 155 4 0 chr12 8309487 8309726 -135476729 - AluSx SINE Alu -72 240 1 266 115 0 115 chr12 8309799 8309838 -135476617 - AluSp SINE Alu -131 172 139 2064 142 0 0 chr12 8309838 8310141 -135476314 - AluSx SINE Alu -9 303 1 266 115 0 115 chr12 8310141 8310153 -135476302 - AluSp SINE Alu -164 139 127 2068 116 0 0 chr12 8310177 8310469 -135475986 - AluSg SINE Alu -18 292 1 1636 190 45 25 chr12 8310480 8310833 -135475622 + MLT1B-int LTR MaLR 1371 1730 -5 2113 155 34 16 chr12 8310839 8311220 -135475235 + MLT1B LTR MaLR 1 388 -2 928 298 143 41 chr12 8311221 8311720 -135474735 - L2 LINE L2 -157 3156 2709 849 244 44 131 chr12 8311720 8311875 -135474580 + MSTD LTR MaLR 1 168 -228 1719 113 0 113 chr12 8311875 8312212 -135474243 + AluJo SINE Alu 1 299 -13 849 244 44 131 chr12 8312212 8312450 -135474005 + MSTD LTR MaLR 168 355 -41 2243 94 0 19 chr12 8312450 8312769 -135473686 - AluSq SINE Alu 0 313 1 849 244 44 131 chr12 8312769 8312808 -135473647 + MSTD LTR MaLR 355 396 0 928 298 143 41 chr12 8312808 8313048 -135473407 - L2 LINE L2 -604 2709 2328 3402 123 94 62 chr12 8313202 8313333 -135473122 - L1MC2 LINE L1 -9 6335 6210 197 62 0 31 chr12 8313333 8313365 -135473090 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1867 122 0 0 chr12 8313374 8313644 -135472811 - AluSx SINE Alu -42 270 1 3402 123 94 62 chr12 8313644 8313809 -135472646 - L1MC2 LINE L1 -141 6203 6045 2089 114 10 0 chr12 8313809 8314108 -135472347 + AluSq SINE Alu 1 302 -11 3402 123 94 62 chr12 8314108 8314494 -135471961 - L1MC2 LINE L1 -299 6045 5620 294 29 0 0 chr12 8314518 8314552 -135471903 - U2 snRNA snRNA -152 36 3 2360 80 3 0 chr12 8314799 8315111 -135471344 - AluSp SINE Alu 0 313 1 684 86 11 0 chr12 8315111 8315204 -135471251 - L1MA1 LINE L1 -45 6257 6164 1338 244 81 50 chr12 8316100 8316596 -135469859 - L1ME3 LINE L1 -31 6131 5621 2045 120 3 0 chr12 8316627 8316919 -135469536 - AluSx SINE Alu -19 293 1 264 338 47 37 chr12 8316964 8317196 -135469259 - MIR3 SINE MIR -25 237 6 325 157 100 14 chr12 8317225 8317295 -135469160 - MER81 DNA DNA -3 111 36 497 149 5 234 chr12 8317506 8317581 -135468874 + MER5A DNA MER1_type 2 92 -97 2426 66 0 0 chr12 8317581 8317882 -135468573 + AluY SINE Alu 1 301 -10 497 149 5 234 chr12 8317882 8317893 -135468562 + MER5A DNA MER1_type 92 104 -85 1586 164 4 4 chr12 8317893 8318174 -135468281 + AluJb SINE Alu 1 281 -31 186 43 0 0 chr12 8318179 8318202 -135468253 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 497 149 5 234 chr12 8318202 8318309 -135468146 + MER5A DNA MER1_type 108 156 -33 209 284 45 30 chr12 8318586 8318653 -135467802 - L3 LINE CR1 -431 1146 1079 2306 81 0 0 chr12 8318718 8319014 -135467441 - AluSx SINE Alu -16 296 1 1550 85 0 31 chr12 8319187 8319410 -135467045 + AluSg/x SINE Alu 95 310 0 456 123 37 12 chr12 8319422 8319503 -135466952 + AluSg/x SINE Alu 215 297 -12 22 0 0 0 chr12 8319591 8319613 -135466842 + AT_rich Low_complexity Low_complexity 1 22 0 1376 144 5 0 chr12 8319625 8319819 -135466636 - AluSx SINE Alu -117 195 1 2314 93 3 13 chr12 8320100 8320413 -135466042 - AluSx SINE Alu 0 312 3 3819 188 46 73 chr12 8320560 8321517 -135464938 - MER21A LTR ERV1 0 931 1 2249 96 4 0 chr12 8321979 8322284 -135464171 - AluSp SINE Alu 0 306 1 1678 165 0 86 chr12 8322398 8322531 -135463924 + AluJo SINE Alu 1 144 -168 2074 148 0 3 chr12 8322531 8322841 -135463614 - AluSx SINE Alu -3 309 1 1678 165 0 86 chr12 8322841 8323046 -135463409 + AluJo SINE Alu 144 310 -2 456 93 0 0 chr12 8323405 8323480 -135462975 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1736 99 119 0 chr12 8323480 8323733 -135462722 - AluSc SINE Alu -26 283 1 105 152 0 0 chr12 8323930 8324081 -135462374 + GC_rich Low_complexity Low_complexity 1 151 0 264 247 76 13 chr12 8324081 8324239 -135462216 + (CGCGG)n Simple_repeat Simple_repeat 3 170 0 230 371 38 0 chr12 8324214 8324319 -135462136 - SUBTEL_sa Satellite Satellite -43 131 23 * 213 124 0 0 chr12 8324319 8324602 -135461853 + GC_rich Low_complexity Low_complexity 1 283 0 200 286 18 18 chr12 8324621 8324733 -135461722 + (CCG)n Simple_repeat Simple_repeat 1 112 0 2041 97 14 4 chr12 8324887 8325188 -135461267 + AluSg SINE Alu 1 304 0 784 171 0 0 chr12 8325467 8325596 -135460859 + AluJo/FLAM SINE Alu 3 131 -171 274 161 18 0 chr12 8325598 8325654 -135460801 + Alu SINE Alu 245 301 -1 324 306 69 35 chr12 8325666 8325810 -135460645 - MIR SINE MIR -77 185 37 416 189 33 0 chr12 8326164 8326254 -135460201 + L1MC3 LINE L1 7476 7568 -217 2174 98 20 3 chr12 8326262 8326558 -135459897 + AluSx SINE Alu 1 301 -11 322 171 24 12 chr12 8326672 8326754 -135459701 + L1MC3 LINE L1 7608 7690 -95 2068 126 24 0 chr12 8326757 8327050 -135459405 + AluSc SINE Alu 1 300 -9 2219 114 0 7 chr12 8327061 8327358 -135459097 + AluSq SINE Alu 1 295 -18 350 134 31 26 chr12 8327365 8327588 -135458867 + AluJo SINE Alu 3 302 0 295 119 0 0 chr12 8327664 8327706 -135458749 + Alu SINE Alu 1 42 -257 894 184 0 0 chr12 8327757 8327904 -135458551 + FRAM SINE Alu 1 142 -34 1071 115 6 0 chr12 8327904 8328061 -135458394 - AluSg/x SINE Alu 0 312 155 322 171 24 12 chr12 8328272 8328354 -135458101 + L1MC3 LINE L1 7608 7690 -95 2188 116 10 0 chr12 8328357 8328651 -135457804 + AluSg SINE Alu 1 297 -13 2249 95 3 10 chr12 8328653 8328947 -135457508 + AluSg SINE Alu 3 294 -16 193 299 30 15 chr12 8329012 8329079 -135457376 + L3 LINE CR1 1079 1146 -431 25 0 0 0 chr12 8329248 8329273 -135457182 + AT_rich Low_complexity Low_complexity 1 25 0 943 108 0 15 chr12 8329940 8330070 -135456385 - AluSg/x SINE Alu -102 208 81 2470 73 0 7 chr12 8330070 8330371 -135456084 - AluY SINE Alu -12 299 1 23 0 0 0 chr12 8330656 8330679 -135455776 + AT_rich Low_complexity Low_complexity 1 23 0 2076 108 3 3 chr12 8330679 8330965 -135455490 - AluSx SINE Alu -24 288 3 1530 133 0 0 chr12 8331141 8331351 -135455104 - AluSx SINE Alu -102 210 1 1627 140 0 0 chr12 8331364 8331593 -135454862 - AluSg/x SINE Alu -2 310 82 927 295 10 10 chr12 8331593 8331891 -135454564 - AluYa5 SINE Alu -3 298 1 198 0 0 0 chr12 8332377 8332399 -135454056 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1708 164 4 7 chr12 8332401 8332682 -135453773 - AluSx SINE Alu -30 282 3 520 92 255 0 chr12 8332682 8332780 -135453675 - Tigger7 DNA MER2_type -610 123 1 2014 101 4 0 chr12 8332803 8333070 -135453385 - AluSp SINE Alu -24 289 22 2221 118 3 0 chr12 8333644 8333941 -135452514 + AluSx SINE Alu 1 298 -14 869 277 7 17 chr12 8333949 8334249 -135452206 + AluSg SINE Alu 3 299 -1 2362 112 0 0 chr12 8334826 8335129 -135451326 + AluSq SINE Alu 1 303 -10 23 0 0 0 chr12 8335390 8335413 -135451042 + GC_rich Low_complexity Low_complexity 1 23 0 1306 139 10 10 chr12 8336021 8336222 -135450233 - AluSx SINE Alu -111 201 1 311 298 78 35 chr12 8336222 8336363 -135450092 - HAL1 LINE L1 -173 2334 2188 195 139 0 0 chr12 8336367 8336403 -135450052 + (T)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr12 8336527 8336548 -135449907 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 8336684 8336705 -135449750 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 8336914 8336937 -135449518 + AT_rich Low_complexity Low_complexity 1 23 0 906 115 0 0 chr12 8337238 8337351 -135449104 - AluSq/x SINE Alu -200 113 1 585 151 0 0 chr12 8337351 8337437 -135449018 - AluS SINE Alu -225 87 2 440 214 74 16 chr12 8337439 8337654 -135448801 + LTR23 LTR ERV1 235 437 0 225 223 138 85 chr12 8337656 8337786 -135448669 - L2 LINE L2 -2 3311 3175 533 175 123 9 chr12 8337805 8337919 -135448536 + FLAM_A SINE Alu 12 138 -4 2180 106 33 7 chr12 8337931 8338234 -135448221 + AluSq SINE Alu 1 311 -2 2421 76 0 7 chr12 8338314 8338616 -135447839 + AluY SINE Alu 7 306 -5 2200 102 41 0 chr12 8338824 8339118 -135447337 + AluSx SINE Alu 1 306 -6 2253 45 0 34 chr12 8339221 8339557 -135446898 - AluY SINE Alu 0 328 3 669 146 38 38 chr12 8339758 8339885 -135446570 + Charlie5 DNA MER1_type 2401 2530 -55 1896 149 3 14 chr12 8339885 8340181 -135446274 - AluSx SINE Alu -17 295 3 669 146 38 38 chr12 8340181 8340238 -135446217 + Charlie5 DNA MER1_type 2529 2585 0 2548 77 0 3 chr12 8340668 8340980 -135445475 - AluY SINE Alu 0 311 1 2344 86 3 10 chr12 8340980 8341284 -135445171 - AluSq SINE Alu -11 302 1 1751 137 58 41 chr12 8341675 8341967 -135444488 - AluJo SINE Alu -13 299 3 483 91 0 152 chr12 8342039 8342075 -135444380 + AluSc SINE Alu 2 42 -267 2143 98 39 0 chr12 8342075 8342360 -135444095 - AluSq SINE Alu -17 296 1 483 91 0 152 chr12 8342360 8342412 -135444043 + AluSc SINE Alu 42 76 -233 2296 63 42 0 chr12 8342412 8342697 -135443758 + AluY SINE Alu 2 298 -13 352 182 0 0 chr12 8342791 8342857 -135443598 + Charlie5 DNA MER1_type 129 194 -2418 869 154 99 0 chr12 8342859 8343080 -135443375 + Charlie5 DNA MER1_type 2382 2624 0 2397 49 3 62 chr12 8343815 8344139 -135442316 - AluY SINE Alu -6 305 1 245 333 0 11 chr12 8344139 8344229 -135442226 + L2 LINE L2 3221 3309 -4 2596 62 0 0 chr12 8344329 8344634 -135441821 + AluSg SINE Alu 1 305 -5 189 0 0 0 chr12 8345127 8345148 -135441307 + (A)n Simple_repeat Simple_repeat 1 21 0 221 0 0 33 chr12 8345277 8345307 -135441148 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 2180 102 7 0 chr12 8346095 8346388 -135440067 - AluSp SINE Alu -17 296 2 747 197 7 7 chr12 8346433 8346570 -135439885 + FLAM_C SINE Alu 2 138 -5 558 228 0 32 chr12 8347833 8347956 -135438499 + FLAM_A SINE Alu 1 119 -14 2013 125 3 20 chr12 8349088 8349383 -135437072 + AluSq SINE Alu 6 295 -18 2247 95 3 0 chr12 8349386 8349680 -135436775 + AluY SINE Alu 6 300 -11 709 174 123 58 chr12 8349758 8349913 -135436542 - FRAM SINE Alu -12 164 1 203 213 43 0 chr12 8350362 8350409 -135436046 + MIR SINE MIR 183 231 -31 2444 82 0 0 chr12 8350465 8350768 -135435687 + AluY SINE Alu 1 303 -8 2113 107 21 3 chr12 8351280 8351571 -135434884 + AluSp SINE Alu 1 296 -17 1131 137 11 33 chr12 8351924 8352107 -135434348 + FRAM SINE Alu 1 172 -4 654 151 48 48 chr12 8352603 8352729 -135433726 + FLAM_A SINE Alu 1 126 -7 2365 88 0 3 chr12 8353149 8353443 -135433012 - AluSc SINE Alu -16 293 1 1710 130 0 86 chr12 8353448 8353763 -135432692 - AluSx SINE Alu -23 289 2 29 0 0 0 chr12 8354681 8354710 -135431745 + AT_rich Low_complexity Low_complexity 1 29 0 652 171 16 47 chr12 8354895 8355024 -135431431 + AluJb SINE Alu 1 125 -187 1944 128 4 0 chr12 8355170 8355444 -135431011 + AluSx SINE Alu 1 275 -37 3841 188 38 77 chr12 8355966 8356930 -135429525 - MER21A LTR ERV1 -4 927 1 2258 110 3 0 chr12 8357493 8357792 -135428663 + AluSp SINE Alu 1 300 -13 1064 206 9 138 chr12 8357801 8357937 -135428518 + AluSx SINE Alu 1 66 -246 1706 138 4 4 chr12 8357937 8358184 -135428271 - AluSx SINE Alu -20 292 46 1064 206 9 138 chr12 8358184 8358396 -135428059 + AluSx SINE Alu 66 304 -8 1857 139 64 4 chr12 8358817 8359098 -135427357 + AluSx SINE Alu 1 298 -14 368 148 123 0 chr12 8359115 8359196 -135427259 + Tigger7 DNA MER2_type 31 121 -584 1478 148 12 136 chr12 8359196 8359534 -135426921 + AluSq SINE Alu 1 296 -7 704 134 0 0 chr12 8359552 8359649 -135426806 - AluJ/FLAM SINE Alu -214 98 2 538 98 49 0 chr12 8360648 8360730 -135425725 - L1PA8 LINE L1 -1 6171 6086 2185 88 32 0 chr12 8361850 8362134 -135424321 + AluSg SINE Alu 1 293 -17 2386 78 0 3 chr12 8362527 8362820 -135423635 + AluSp SINE Alu 1 292 -21 2316 112 0 3 chr12 8362939 8363243 -135423212 - AluSq SINE Alu -10 303 1 348 236 122 24 chr12 8363243 8363366 -135423089 + L2 LINE L2 2687 2821 -493 1838 154 35 0 chr12 8363451 8363737 -135422718 - AluSq SINE Alu -17 296 1 2070 88 49 14 chr12 8363836 8364120 -135422335 + AluSq SINE Alu 1 294 -19 491 201 42 74 chr12 8364493 8364625 -135421830 - LTR41 LTR ERVL -590 183 57 2581 45 0 19 chr12 8364625 8364934 -135421521 + AluY SINE Alu 1 303 -8 491 201 42 74 chr12 8364934 8364990 -135421465 - LTR41 LTR ERVL -716 57 1 198 103 0 0 chr12 8365625 8365654 -135420801 + (AGGGGG)n Simple_repeat Simple_repeat 2 30 0 2360 64 0 42 chr12 8365963 8366276 -135420179 - AluSp SINE Alu -13 300 1 1192 142 6 0 chr12 8366291 8366474 -135419981 + AluSg/x SINE Alu 123 306 -6 503 197 30 23 chr12 8366474 8366606 -135419849 + L1MB8 LINE L1 5876 6008 -170 2031 131 7 3 chr12 8366619 8366910 -135419545 + AluJb SINE Alu 1 292 -20 2522 70 0 13 chr12 8366931 8367246 -135419209 + AluY SINE Alu 1 311 0 381 310 14 28 chr12 8367246 8367462 -135418993 + L1MC4a LINE L1 5736 5948 -1860 2261 86 7 0 chr12 8367623 8367913 -135418542 + AluSp SINE Alu 6 297 -16 2505 49 0 0 chr12 8368014 8368322 -135418133 + AluY SINE Alu 1 308 0 511 357 13 21 chr12 8368503 8368741 -135417714 + L1MEd LINE L1 674 909 -5463 1049 98 0 0 chr12 8368761 8368893 -135417562 + AluSq/x SINE Alu 1 132 -181 2177 113 3 0 chr12 8368893 8369201 -135417254 + AluSq SINE Alu 1 309 0 1538 122 0 0 chr12 8369216 8369421 -135417034 + AluSx SINE Alu 5 209 -103 810 177 0 0 chr12 8369516 8369640 -135416815 - FLAM_A SINE Alu -8 134 11 2455 74 0 3 chr12 8369654 8369950 -135416505 - AluSp SINE Alu -18 295 1 341 307 73 39 chr12 8369950 8370122 -135416333 + L1MEd LINE L1 2257 2437 -3947 31 0 0 0 chr12 8370120 8370151 -135416304 + AT_rich Low_complexity Low_complexity 1 31 0 * 2004 135 0 22 chr12 8370253 8370571 -135415884 + AluSx SINE Alu 1 311 -1 2348 204 8 22 chr12 8370574 8370840 -135415615 - L1MB7 LINE L1 -146 6038 5770 1932 145 3 0 chr12 8370840 8371136 -135415319 - AluSx SINE Alu -15 297 1 2348 204 8 22 chr12 8371136 8371242 -135415213 - L1MB7 LINE L1 -414 5770 5664 3541 70 7 11 chr12 8371242 8371697 -135414758 - MLT2A2 LTR ERVL 0 453 1 2348 204 8 22 chr12 8371697 8371814 -135414641 - L1MB7 LINE L1 -520 5664 5555 439 95 0 0 chr12 8371819 8371882 -135414573 + MER41A LTR ERV1 400 462 -92 1571 109 0 28 chr12 8371897 8372145 -135414310 - AluSp SINE Alu 0 313 73 1879 113 34 20 chr12 8372145 8372437 -135414018 - AluSx SINE Alu -15 297 2 21 0 0 0 chr12 8372437 8372458 -135413997 + AT_rich Low_complexity Low_complexity 1 21 0 1783 130 4 0 chr12 8372465 8372726 -135413729 - AluSx SINE Alu -50 262 1 1195 139 0 0 chr12 8372913 8373100 -135413355 - AluSq SINE Alu -4 309 123 1815 141 7 10 chr12 8373118 8373408 -135413047 - AluSx SINE Alu -23 289 1 2117 94 0 0 chr12 8373468 8373755 -135412700 + AluSx SINE Alu 11 297 -15 2030 125 0 3 chr12 8373892 8374197 -135412258 + AluSg SINE Alu 1 304 -6 1360 185 68 43 chr12 8374397 8374678 -135411777 + AluJb SINE Alu 4 291 -11 1950 122 10 10 chr12 8374738 8375033 -135411422 + AluSg SINE Alu 1 295 -15 2104 92 0 7 chr12 8376569 8376862 -135409593 + AluSg SINE Alu 1 291 -19 2105 112 3 0 chr12 8376868 8377164 -135409291 + AluSp SINE Alu 1 297 -16 2204 76 0 20 chr12 8377211 8377513 -135408942 + AluSx SINE Alu 1 296 -16 1943 101 73 0 chr12 8377670 8377958 -135408497 + AluSq SINE Alu 1 309 -4 824 204 0 0 chr12 8377965 8378107 -135408348 + AluJb SINE Alu 140 281 -31 632 109 11 0 chr12 8378101 8378193 -135408262 - AluSp/q SINE Alu -6 307 215 * 189 0 0 0 chr12 8378497 8378518 -135407937 + (A)n Simple_repeat Simple_repeat 1 21 0 1809 128 24 14 chr12 8378522 8378811 -135407644 + AluSx SINE Alu 5 296 -16 1838 114 32 4 chr12 8378813 8379094 -135407361 + AluSp SINE Alu 4 292 -21 2258 95 3 0 chr12 8379347 8379653 -135406802 + AluSc SINE Alu 1 307 -2 2145 123 0 0 chr12 8379656 8379966 -135406489 + AluSg SINE Alu 1 310 0 1825 161 7 3 chr12 8379968 8380273 -135406182 - AluSx SINE Alu -6 306 1 563 130 0 0 chr12 8381002 8381079 -135405376 + AluS SINE Alu 2 78 -234 480 113 0 0 chr12 8381074 8381136 -135405319 - AluSx SINE Alu -35 277 216 * 910 126 0 0 chr12 8381144 8381279 -135405176 - AluSx SINE Alu -177 135 1 589 165 25 25 chr12 8381298 8381419 -135405036 - FLAM_A SINE Alu -21 121 1 361 167 0 0 chr12 8381765 8381831 -135404624 - AluS SINE Alu -5 296 231 1329 108 5 0 chr12 8381833 8382018 -135404437 - AluSq SINE Alu -127 186 1 1850 78 114 14 chr12 8382108 8382389 -135404066 - AluSc SINE Alu 0 309 1 22 0 0 0 chr12 8383390 8383412 -135403043 + AT_rich Low_complexity Low_complexity 1 22 0 1287 186 25 68 chr12 8383455 8383600 -135402855 + AluJb SINE Alu 1 151 -161 2267 42 0 62 chr12 8383600 8383909 -135402546 + AluY SINE Alu 8 297 -14 1287 186 25 68 chr12 8383909 8384086 -135402369 + AluJb SINE Alu 151 309 -3 2339 87 0 0 chr12 8384242 8384552 -135401903 - AluSx SINE Alu -2 310 1 1677 116 135 4 chr12 8385448 8385715 -135400740 + AluSx SINE Alu 1 302 0 1701 152 0 35 chr12 8386287 8386403 -135400052 - AluSx SINE Alu -8 304 185 2269 84 3 0 chr12 8386403 8386700 -135399755 + AluSp SINE Alu 4 301 -12 1701 152 0 35 chr12 8386700 8386898 -135399557 - AluSx SINE Alu -127 185 1 2087 122 0 6 chr12 8386907 8387218 -135399237 - AluSx SINE Alu -3 309 1 2045 93 10 10 chr12 8387231 8387531 -135398924 - AluSx SINE Alu -12 300 1 2483 40 0 7 chr12 8388303 8388600 -135397855 - AluY SINE Alu -16 295 1 2213 97 0 0 chr12 8389668 8389968 -135396487 + AluY SINE Alu 1 300 -11 2090 96 6 19 chr12 8390022 8390336 -135396119 + AluSx SINE Alu 1 310 -2 198 257 146 21 chr12 8391080 8391224 -135395231 - L2 LINE L2 -108 3205 3044 3877 96 12 50 chr12 8391417 8391813 -135394642 + MER41A LTR ERV1 1 411 -143 2213 82 0 0 chr12 8391813 8392093 -135394362 + AluSq SINE Alu 14 293 -20 2101 97 10 7 chr12 8392103 8392402 -135394053 + AluSp SINE Alu 1 300 -13 3877 96 12 50 chr12 8392402 8392570 -135393885 + MER41A LTR ERV1 420 554 0 2366 82 0 3 chr12 8392813 8393118 -135393337 - AluSc SINE Alu -5 304 1 191 222 0 0 chr12 8393142 8393178 -135393277 + L2 LINE L2 2514 2549 -765 570 308 98 37 chr12 8393495 8393933 -135392522 - L2 LINE L2 -304 3009 2548 646 33 11 11 chr12 8394006 8394096 -135392359 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 251 253 12 96 chr12 8394096 8394179 -135392276 + L2 LINE L2 3190 3265 -48 503 250 91 0 chr12 8394184 8394316 -135392139 + MER5A DNA MER1_type 18 161 -28 2444 62 0 0 chr12 8394424 8394728 -135391727 + AluSx SINE Alu 1 304 -8 1476 167 21 11 chr12 8395156 8395246 -135391209 + AluJo SINE Alu 29 117 -195 432 0 0 0 chr12 8395246 8395294 -135391161 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1476 167 21 11 chr12 8395294 8395484 -135390971 + AluJo SINE Alu 117 312 0 1214 121 0 0 chr12 8395489 8395663 -135390792 + AluSg/x SINE Alu 136 309 0 291 211 28 0 chr12 8395865 8395936 -135390519 + MER5A DNA MER1_type 77 149 -40 186 43 0 0 chr12 8395940 8395963 -135390492 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1950 108 21 0 chr12 8396160 8396447 -135390008 - AluSq SINE Alu -20 293 1 626 143 0 0 chr12 8397126 8397224 -135389231 + HY1 scRNA scRNA 14 111 -1 24 32 0 0 chr12 8397237 8397268 -135389187 + AT_rich Low_complexity Low_complexity 1 31 0 2217 74 11 0 chr12 8397416 8397723 -135388732 + AluY SINE Alu 1 310 0 2008 104 40 0 chr12 8397753 8398050 -135388405 + AluY SINE Alu 1 309 -2 2281 93 3 0 chr12 8398070 8398380 -135388075 + AluY SINE Alu 1 311 0 1866 147 0 13 chr12 8398404 8398711 -135387744 - AluSg SINE Alu -7 303 1 1653 153 11 14 chr12 8398799 8399081 -135387374 - AluSx SINE Alu -23 289 9 320 161 0 16 chr12 8399103 8399165 -135387290 - AluSq SINE Alu -4 297 237 4689 141 31 33 chr12 8399168 8400542 -135385913 - pTR5 LTR ERV1 0 2438 743 1655 96 8 4 chr12 8400542 8400782 -135385673 - AluSq SINE Alu -72 241 1 1030 90 0 0 chr12 8400782 8400915 -135385540 - AluSg SINE Alu -177 133 1 225 94 0 0 chr12 8400917 8400949 -135385506 + (T)n Simple_repeat Simple_repeat 1 32 0 1026 114 0 0 chr12 8400953 8401093 -135385362 - AluSc SINE Alu -169 140 1 827 103 0 8 chr12 8401152 8401269 -135385186 - AluSg/x SINE Alu -18 294 179 210 154 0 0 chr12 8401273 8401312 -135385143 + T-rich Low_complexity Low_complexity 4 42 0 2151 91 10 0 chr12 8401322 8401619 -135384836 - AluSp SINE Alu -13 300 1 1701 155 17 3 chr12 8401621 8401917 -135384538 - AluSx SINE Alu -12 300 1 2030 125 0 7 chr12 8401936 8402240 -135384215 - AluSq SINE Alu -11 302 1 299 170 0 0 chr12 8402240 8402293 -135384162 - Alu SINE Alu -5 297 245 377 159 0 0 chr12 8402323 8402386 -135384069 - FLAM SINE Alu -8 125 63 1525 86 53 16 chr12 8402386 8402631 -135383824 + LTR61 LTR ERV1 1 254 -341 2091 114 0 0 chr12 8402635 8402943 -135383512 - AluSg SINE Alu -2 308 1 1422 138 0 0 chr12 8403081 8403291 -135383164 + AluSq SINE Alu 1 210 -103 1999 136 0 0 chr12 8403294 8403596 -135382859 + AluSq SINE Alu 6 307 -6 1785 141 47 10 chr12 8403599 8403898 -135382557 + AluSg SINE Alu 1 310 0 1789 161 3 0 chr12 8403916 8404214 -135382241 + AluSq SINE Alu 2 300 -13 544 213 0 0 chr12 8404226 8404320 -135382135 + AluJb SINE Alu 196 289 -23 2157 100 20 0 chr12 8404342 8404643 -135381812 + AluSx SINE Alu 1 307 -5 492 185 131 8 chr12 8404643 8404773 -135381682 + L1MA9 LINE L1 5802 5947 -365 408 176 15 0 chr12 8404781 8404849 -135381606 - AluJo SINE Alu -117 185 117 1686 133 19 4 chr12 8404923 8405193 -135381262 - L1M2 LINE L1 -546 5766 5493 1226 184 13 92 chr12 8405198 8405335 -135381120 - MLT1A1 LTR MaLR -84 281 135 2125 114 3 10 chr12 8405335 8405643 -135380812 - AluSx SINE Alu -6 306 1 2031 114 0 10 chr12 8405652 8405949 -135380506 - AluSx SINE Alu -18 294 1 1226 184 13 92 chr12 8405949 8406106 -135380349 - MLT1A1 LTR MaLR -238 127 1 1718 149 0 0 chr12 8406110 8406378 -135380077 - AluSx SINE Alu -8 304 37 347 245 40 44 chr12 8406382 8406529 -135379926 - L1MC4 LINE L1 -1346 6976 1941 311 227 39 86 chr12 8406506 8406634 -135379821 + L1MC4 LINE L1 1942 2063 -4363 * 345 292 50 40 chr12 8406560 8406876 -135379579 - L1MC4 LINE L1 -159 6703 5667 309 283 11 22 chr12 8406852 8406944 -135379511 + L1MC4 LINE L1 6615 6705 -1337 * 2167 94 0 0 chr12 8406961 8407248 -135379207 - AluSg SINE Alu -23 287 1 1875 172 0 0 chr12 8407416 8407719 -135378736 + AluJb SINE Alu 1 303 -9 2086 112 3 10 chr12 8407735 8408040 -135378415 - AluSc SINE Alu -5 304 2 1009 333 156 19 chr12 8408732 8408855 -135377600 + L2 LINE L2 1606 1711 -1603 2034 101 42 0 chr12 8408855 8409143 -135377312 + AluSg SINE Alu 1 300 -10 1009 333 156 19 chr12 8409143 8410024 -135376431 + L2 LINE L2 1711 2748 -566 1997 249 51 10 chr12 8410042 8410556 -135375899 + MLT1H LTR MaLR 13 547 -2 296 333 197 19 chr12 8410755 8410968 -135375487 + L2 LINE L2 3016 3266 -6 1480 174 0 52 chr12 8411032 8411319 -135375136 + AluSx SINE Alu 1 272 -40 418 245 92 31 chr12 8412143 8412437 -135374018 - L1ME4a LINE L1 -21 6100 5789 324 256 124 16 chr12 8412669 8412798 -135373657 + L1ME4a LINE L1 5975 6117 -4 885 224 56 0 chr12 8414699 8414931 -135371524 - L1MC4 LINE L1 -1338 6704 6460 335 256 11 131 chr12 8416371 8416547 -135369908 - MLT1I LTR MaLR -18 391 237 526 259 42 17 chr12 8416801 8417064 -135369391 + Charlie7 DNA MER1_type 1 318 -2294 1291 256 57 117 chr12 8417085 8417823 -135368632 + MER21B LTR ERV1 24 717 -146 1981 139 3 0 chr12 8418028 8418337 -135368118 + AluSq SINE Alu 1 310 -3 286 149 0 0 chr12 8418406 8418453 -135368002 - L1M4 LINE L1 -309 5875 5829 1213 219 78 62 chr12 8418454 8418784 -135367671 - MLT1A1 LTR MaLR -2 363 25 2366 118 90 18 chr12 8418784 8419183 -135367272 + MSTA LTR MaLR 1 428 0 1213 219 78 62 chr12 8419183 8419209 -135367246 - MLT1A1 LTR MaLR -340 25 1 265 95 0 0 chr12 8419209 8419251 -135367204 - L1M4 LINE L1 -350 5834 5793 1032 192 63 49 chr12 8419251 8419670 -135366785 + MER4C LTR ERV1 275 464 -1 244 167 183 17 chr12 8419681 8419741 -135366714 + LTR67 LTR ERVL 10 79 -478 2268 120 7 0 chr12 8420013 8420322 -135366133 + AluSx SINE Alu 1 311 -1 1189 278 83 83 chr12 8420736 8421150 -135365305 + ERVL LTR ERVL 2110 2526 -3238 1702 158 0 85 chr12 8421150 8421290 -135365165 + AluJb SINE Alu 1 101 -211 2094 125 7 3 chr12 8421290 8421577 -135364878 + AluSx SINE Alu 1 288 -24 1702 158 0 85 chr12 8421577 8421752 -135364703 + AluJb SINE Alu 101 289 -23 1189 278 83 83 chr12 8421752 8422061 -135364394 + ERVL LTR ERVL 2525 2833 -2931 866 187 58 0 chr12 8422092 8422247 -135364208 + MER5A DNA MER1_type 1 164 -25 633 296 103 38 chr12 8422303 8422729 -135363726 + ERVL LTR ERVL 2993 3446 -2318 261 330 168 11 chr12 8422762 8422947 -135363508 + L1MEd LINE L1 242 455 -5664 473 239 56 56 chr12 8422955 8423008 -135363447 + L1MC4 LINE L1 6857 6909 -1133 2635 40 0 0 chr12 8423008 8423309 -135363146 + AluY SINE Alu 1 301 -10 473 239 56 56 chr12 8423309 8423397 -135363058 + L1MC4 LINE L1 6908 6998 -1044 629 316 43 23 chr12 8423558 8423814 -135362641 + LTR16C LTR ERVL 137 397 -94 3643 27 2 0 chr12 8424179 8424585 -135361870 + L1PA4 LINE L1 5749 6155 0 481 342 22 13 chr12 8424727 8424958 -135361497 + L1MEd LINE L1 493 725 -5394 23 33 0 0 chr12 8425038 8425068 -135361387 + AT_rich Low_complexity Low_complexity 1 30 0 1112 98 24 37 chr12 8425170 8425284 -135361171 + L1PA16 LINE L1 5995 6109 -57 2243 109 3 0 chr12 8425284 8425586 -135360869 + AluSp SINE Alu 1 303 -10 420 55 0 0 chr12 8425587 8425642 -135360813 + (CA)n Simple_repeat Simple_repeat 2 56 0 1112 98 24 37 chr12 8425642 8425689 -135360766 + L1PA16 LINE L1 6108 6156 -10 305 253 105 19 chr12 8425714 8425876 -135360579 + L1ME LINE L1 5617 5792 -329 38 51 0 0 chr12 8425956 8426015 -135360440 + AT_rich Low_complexity Low_complexity 1 59 0 2282 106 3 0 chr12 8426072 8426373 -135360082 + AluSx SINE Alu 1 302 -10 2399 75 3 0 chr12 8426380 8426674 -135359781 + AluY SINE Alu 1 295 -16 314 223 80 78 chr12 8427206 8427424 -135359031 + MIR SINE MIR 76 249 -13 235 250 0 0 chr12 8427760 8427812 -135358643 - L2 LINE L2 -11 3302 3251 814 210 0 6 chr12 8427828 8427985 -135358470 - FRAM SINE Alu -23 153 1 621 241 71 18 chr12 8428014 8428184 -135358271 - MIR SINE MIR -82 180 2 13283 178 25 27 chr12 8429350 8431902 -135354553 + L1PA15 LINE L1 2834 5390 -775 2405 87 0 10 chr12 8431902 8432211 -135354244 + AluSg SINE Alu 1 306 -4 13283 178 25 27 chr12 8432211 8432984 -135353471 + L1PA15 LINE L1 5390 6163 -2 181 393 105 20 chr12 8433521 8433816 -135352639 - L2 LINE L2 -5 3267 2948 2302 94 7 0 chr12 8433868 8434175 -135352280 + AluY SINE Alu 1 309 -2 3685 142 29 29 chr12 8434704 8434729 -135351726 - L1 LINE L1 -1909 5656 5632 2447 144 71 2 chr12 8434729 8435153 -135351302 - L1MA9 LINE L1 0 6312 5860 3685 142 29 29 chr12 8435153 8435809 -135350646 - L1 LINE L1 -1932 5633 4975 2807 204 90 64 chr12 8435826 8435846 -135350609 - L1 LINE L1 -2987 4578 4560 2422 90 0 0 chr12 8435846 8436146 -135350309 - AluSg SINE Alu -10 300 1 2807 204 90 64 chr12 8436146 8436726 -135349729 - L1 LINE L1 -3005 4560 3996 351 21 0 0 chr12 8436726 8436773 -135349682 + MER41B LTR ERV1 502 548 -87 2807 204 90 64 chr12 8436773 8436841 -135349614 - L1 LINE L1 -3569 3996 3931 2152 121 14 0 chr12 8436841 8437138 -135349317 + AluSx SINE Alu 1 301 -11 2807 204 90 64 chr12 8437138 8437225 -135349230 - L1 LINE L1 -3634 3931 3848 3057 164 27 40 chr12 8437225 8437655 -135348800 - MER44D DNA MER2_type -1882 605 127 2556 37 10 3 chr12 8437655 8437954 -135348501 - AluY SINE Alu -10 301 1 3057 164 27 40 chr12 8437954 8438077 -135348378 - MER44D DNA MER2_type -2360 127 4 2807 204 90 64 chr12 8438077 8438559 -135347896 - L1 LINE L1 -3717 3848 3238 929 145 0 0 chr12 8438559 8438690 -135347765 - FLAM_C SINE Alu -2 131 1 2807 204 90 64 chr12 8438690 8438765 -135347690 - L1 LINE L1 -4327 3238 3166 2202 117 7 0 chr12 8438780 8439078 -135347377 - AluSx SINE Alu -12 300 1 1622 204 18 0 chr12 8439088 8439373 -135347082 - AluJo SINE Alu -12 300 11 2941 3 0 0 chr12 8442004 8442316 -135344139 + AluYb8 SINE Alu 1 312 -6 3689 166 22 42 chr12 8442321 8442786 -135343669 + L1MD2 LINE L1 5656 6104 -255 1900 172 3 0 chr12 8442786 8443083 -135343372 + AluJo SINE Alu 1 298 -14 3689 166 22 42 chr12 8443083 8443335 -135343120 + L1MD2 LINE L1 6104 6359 0 408 287 39 116 chr12 8443686 8443778 -135342677 - MIR SINE MIR -10 252 154 222 37 0 0 chr12 8443778 8443805 -135342650 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1865 150 21 7 chr12 8443808 8444095 -135342360 - AluJb SINE Alu -9 303 13 408 287 39 116 chr12 8444095 8444256 -135342199 - MIR SINE MIR -110 152 15 665 312 146 14 chr12 8444895 8445190 -135341265 - LTR16C LTR ERVL 0 491 158 3644 123 48 0 chr12 8445828 8446331 -135340124 + MER1A DNA MER1_type 1 527 0 834 259 75 19 chr12 8446414 8446626 -135339829 + MER58A DNA MER1_type 1 224 0 1901 108 31 0 chr12 8446733 8446992 -135339463 - AluSq SINE Alu -13 300 34 1958 124 38 0 chr12 8447891 8448182 -135338273 + AluSx SINE Alu 1 302 -10 2282 253 84 46 chr12 8448328 8449374 -135337081 - L2 LINE L2 -8 3305 2239 989 171 12 0 chr12 8449865 8450029 -135336426 + FRAM SINE Alu 1 165 -11 25 31 0 0 chr12 8450264 8450296 -135336159 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 8450526 8450556 -135335899 + AT_rich Low_complexity Low_complexity 1 30 0 297 0 0 0 chr12 8450590 8450623 -135335832 + (TG)n Simple_repeat Simple_repeat 2 34 0 1933 104 30 11 chr12 8450627 8450896 -135335559 - AluSx SINE Alu -36 276 3 2136 116 3 7 chr12 8450919 8451221 -135335234 - AluSx SINE Alu -11 301 1 370 273 71 60 chr12 8451478 8451547 -135334908 - MIR SINE MIR -6 256 189 2196 129 0 16 chr12 8451547 8451864 -135334591 + AluSx SINE Alu 1 312 0 370 273 71 60 chr12 8451864 8451977 -135334478 - MIR SINE MIR -73 189 72 2274 101 0 13 chr12 8452234 8452542 -135333913 + AluSg SINE Alu 1 304 -6 326 300 142 17 chr12 8452679 8452799 -135333656 - L2 LINE L2 0 3272 3138 1560 74 165 0 chr12 8452889 8453119 -135333336 + L1PA7 LINE L1 5887 6154 0 1776 170 0 16 chr12 8453510 8453822 -135332633 + AluJo SINE Alu 1 307 -5 2258 117 7 0 chr12 8453826 8454133 -135332322 + AluSg SINE Alu 1 309 -1 202 193 0 0 chr12 8454265 8454310 -135332145 - MIR SINE MIR -66 142 108 387 0 0 0 chr12 8454734 8454777 -135331678 + (TG)n Simple_repeat Simple_repeat 1 43 0 742 278 83 14 chr12 8456577 8456893 -135329562 + L1MC/D LINE L1 5468 5800 -362 210 344 83 42 chr12 8457175 8457463 -135328992 + L2 LINE L2 499 798 -2516 219 368 164 9 chr12 8457624 8458081 -135328374 + L2 LINE L2 1182 1709 -1605 262 343 160 73 chr12 8458182 8458564 -135327891 + L2 LINE L2 2856 3270 -2 2165 124 3 13 chr12 8458630 8458945 -135327510 + AluSx SINE Alu 1 312 0 533 172 0 0 chr12 8459782 8459869 -135326586 + L2 LINE L2 3225 3311 -2 404 263 113 31 chr12 8460425 8460827 -135325628 + L1ME3 LINE L1 5449 5951 -211 804 157 50 0 chr12 8460864 8460985 -135325470 + AluSp SINE Alu 123 249 -64 354 91 18 0 chr12 8461060 8461115 -135325340 + AluSp SINE Alu 242 297 -6 425 268 45 62 chr12 8461431 8461610 -135324845 - MIR SINE MIR -50 212 37 495 195 219 18 chr12 8461671 8461835 -135324620 - MIR SINE MIR 0 262 66 1828 154 18 89 chr12 8462024 8462340 -135324115 - MER82 DNA MER2_type -157 496 210 2146 79 36 0 chr12 8462340 8462618 -135323837 + AluSq SINE Alu 1 288 -25 1828 154 18 89 chr12 8462618 8462684 -135323771 - MER82 DNA MER2_type -443 210 141 1109 138 0 0 chr12 8462684 8462844 -135323611 + AluSg/x SINE Alu 135 294 -16 429 276 141 25 chr12 8462932 8463131 -135323324 + MIR SINE MIR 17 238 -24 2356 86 0 10 chr12 8463293 8463597 -135322858 + AluSc SINE Alu 2 302 -7 1304 119 5 0 chr12 8463772 8463957 -135322498 - AluSg/x SINE Alu -2 310 125 1976 168 89 51 chr12 8464090 8464561 -135321894 - LTR2B LTR ERV1 0 490 2 21 71 0 0 chr12 8464834 8464876 -135321579 + AT_rich Low_complexity Low_complexity 1 42 0 281 263 91 10 chr12 8465135 8465234 -135321221 - MIR SINE MIR 0 262 156 1862 130 68 10 chr12 8465323 8465616 -135320839 + AluJo SINE Alu 1 310 -2 203 0 0 36 chr12 8465832 8465860 -135320595 + (CTG)n Simple_repeat Simple_repeat 1 27 0 1804 160 17 3 chr12 8466019 8466319 -135320136 - AluJb SINE Alu 0 312 9 2421 60 3 22 chr12 8466329 8466644 -135319811 - AluY SINE Alu -2 309 1 383 253 48 84 chr12 8466858 8467024 -135319431 - MIR SINE MIR -40 168 9 425 302 44 28 chr12 8467131 8467313 -135319142 - MIR3 SINE MIR -1 207 23 1132 103 0 7 chr12 8467956 8468102 -135318353 - AluSq/x SINE Alu -168 145 1 237 252 156 45 chr12 8468601 8468809 -135317646 + L1ME4a LINE L1 5549 5781 -340 2307 99 0 3 chr12 8468833 8469136 -135317319 + AluSq SINE Alu 1 302 -11 28 48 0 0 chr12 8469324 8469366 -135317089 + AT_rich Low_complexity Low_complexity 1 42 0 361 278 17 80 chr12 8469470 8469591 -135316864 + L1ME4a LINE L1 5835 5962 -159 1918 145 0 7 chr12 8469591 8469887 -135316568 + AluSx SINE Alu 1 294 -18 361 278 17 80 chr12 8469887 8470064 -135316391 + L1ME4a LINE L1 5962 6114 -7 216 156 44 0 chr12 8470438 8470483 -135315972 + (CCTA)n Simple_repeat Simple_repeat 2 48 0 319 283 147 23 chr12 8471359 8471617 -135314838 - L1M4 LINE L1 -2961 3185 2896 2322 91 0 10 chr12 8471875 8472183 -135314272 - AluSx SINE Alu -7 305 1 757 179 0 22 chr12 8472539 8472655 -135313800 + FLAM_C SINE Alu 2 116 -196 216 0 0 0 chr12 8472655 8472679 -135313776 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 757 179 0 22 chr12 8472679 8472696 -135313759 + FLAM_C SINE Alu 116 132 -180 238 281 47 0 chr12 8472696 8472760 -135313695 + MIR3 SINE MIR 142 208 0 2129 113 13 0 chr12 8472839 8473141 -135313314 - AluSp SINE Alu -7 306 1 1984 144 7 0 chr12 8473457 8473762 -135312693 - AluSx SINE Alu -5 307 1 2269 92 0 0 chr12 8474296 8474602 -135311853 + AluSg SINE Alu 1 306 -4 2237 71 3 16 chr12 8474603 8474913 -135311542 + AluSp SINE Alu 1 306 -7 749 167 24 0 chr12 8475091 8475217 -135311238 + FLAM_C SINE Alu 5 133 0 2601 158 30 2 chr12 8475305 8475779 -135310676 + L1MB2 LINE L1 5682 6168 -3 1611 163 11 3 chr12 8475791 8476097 -135310358 + AluSx SINE Alu 1 308 0 320 255 112 0 chr12 8476177 8476338 -135310117 + L1ME4a LINE L1 5938 6116 -5 2101 99 0 0 chr12 8476861 8477144 -135309311 + AluSx SINE Alu 5 287 -25 30 0 0 0 chr12 8477144 8477174 -135309281 + AT_rich Low_complexity Low_complexity 1 30 0 820 190 67 11 chr12 8478929 8479108 -135307347 + MER5A DNA MER1_type 1 189 0 515 262 81 57 chr12 8479908 8480156 -135306299 - HAL1 LINE L1 -2 2505 2252 2139 98 0 30 chr12 8481116 8481421 -135305034 - AluSg SINE Alu -14 296 1 2020 127 3 0 chr12 8481427 8481719 -135304736 - AluSq SINE Alu -20 293 1 199 258 57 105 chr12 8482389 8482513 -135303942 - MIR SINE MIR -60 148 31 233 29 29 0 chr12 8484448 8484482 -135301973 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2011 117 14 0 chr12 8485035 8485326 -135301129 + AluY SINE Alu 2 296 -15 1921 120 3 23 chr12 8485384 8485683 -135300772 + AluSx SINE Alu 1 293 -19 1926 136 3 0 chr12 8486122 8486417 -135300038 + AluSx SINE Alu 1 296 -16 1028 41 0 63 chr12 8486418 8486733 -135299722 + (GGGAA)n Simple_repeat Simple_repeat 1 295 0 1724 169 0 23 chr12 8487276 8487584 -135298871 + AluJb SINE Alu 1 301 -11 255 331 11 19 chr12 8488376 8488507 -135297948 - MIR SINE MIR -65 143 27 213 163 0 0 chr12 8489568 8489617 -135296838 + (CTG)n Simple_repeat Simple_repeat 1 49 0 2236 79 14 0 chr12 8490089 8490381 -135296074 - AluSp SINE Alu -17 296 1 445 274 65 50 chr12 8490960 8491281 -135295174 + L1MC5 LINE L1 7603 7928 -33 2143 105 0 7 chr12 8491593 8491897 -135294558 + AluSq SINE Alu 1 302 -11 1990 134 0 13 chr12 8491900 8492036 -135294419 + AluSx SINE Alu 1 137 -175 2259 85 10 3 chr12 8492036 8492341 -135294114 + AluSx SINE Alu 1 307 -5 1990 134 0 13 chr12 8492341 8492511 -135293944 + AluSx SINE Alu 137 303 -9 1411 160 144 0 chr12 8492995 8493258 -135293197 - AluSx SINE Alu 0 302 2 210 302 0 0 chr12 8493294 8493347 -135293108 + CT-rich Low_complexity Low_complexity 1 53 0 214 279 115 0 chr12 8494073 8494134 -135292321 + MIR SINE MIR 86 153 -109 2274 98 0 3 chr12 8494313 8494618 -135291837 - AluSq SINE Alu -9 304 1 2179 107 0 0 chr12 8495374 8495672 -135290783 + AluSq SINE Alu 1 298 -15 1656 188 13 0 chr12 8495742 8496040 -135290415 + AluJo SINE Alu 1 302 -10 1771 127 11 21 chr12 8496044 8496327 -135290128 + AluSx SINE Alu 1 280 -32 186 43 0 0 chr12 8496341 8496364 -135290091 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 268 233 0 0 chr12 8496736 8496796 -135289659 + L2 LINE L2 3254 3313 0 2062 122 0 3 chr12 8496831 8497127 -135289328 + AluSg SINE Alu 1 295 -15 2030 122 0 0 chr12 8500429 8500745 -135285710 - AluSx SINE Alu 0 316 1 238 197 175 43 chr12 8501346 8501484 -135284971 + MIR SINE MIR 13 262 0 198 103 0 0 chr12 8503900 8503929 -135282526 + (GGA)n Simple_repeat Simple_repeat 1 29 0 257 232 20 20 chr12 8504822 8504921 -135281534 + C-rich Low_complexity Low_complexity 2 100 0 2168 66 3 78 chr12 8505587 8505919 -135280536 - AluSg SINE Alu -3 307 1 593 188 23 30 chr12 8505981 8506114 -135280341 - FLAM_C SINE Alu -1 132 1 1943 99 41 3 chr12 8506148 8506442 -135280013 + AluSx SINE Alu 1 305 -7 1165 102 12 0 chr12 8506442 8506608 -135279847 + AluSg/x SINE Alu 132 299 -11 619 315 94 9 chr12 8506707 8506920 -135279535 - MIR SINE MIR -26 236 6 416 223 39 23 chr12 8507268 8507398 -135279057 + L1ME LINE L1 5692 5823 -298 679 241 18 12 chr12 8508059 8508225 -135278230 + MIR SINE MIR 59 225 -37 538 183 183 49 chr12 8508283 8508546 -135277909 + L1MC5 LINE L1 7518 7815 -146 2123 103 10 0 chr12 8508598 8508890 -135277565 + AluSx SINE Alu 1 295 -17 1967 113 7 7 chr12 8508960 8509252 -135277203 + AluSg SINE Alu 1 292 -18 278 265 112 0 chr12 8509366 8509464 -135276991 - MIR SINE MIR -41 221 113 2516 39 0 7 chr12 8509847 8510157 -135276298 - AluY SINE Alu -3 308 1 1903 104 47 17 chr12 8511506 8511804 -135274651 - AluSx SINE Alu 0 312 6 183 296 45 0 chr12 8511822 8511866 -135274589 + L2 LINE L2 3244 3289 -24 669 91 4 6 chr12 8511915 8512158 -135274297 + AluSx SINE Alu 2 293 -17 1959 109 31 7 chr12 8512539 8512832 -135273623 - AluSc SINE Alu -9 300 1 2328 77 0 22 chr12 8514144 8514457 -135271998 + AluSx SINE Alu 2 307 -5 863 180 6 6 chr12 8514777 8514933 -135271522 + AluJb SINE Alu 140 298 -14 461 203 106 32 chr12 8514933 8515056 -135271399 + FLAM_A SINE Alu 1 132 -1 1249 163 108 59 chr12 8515340 8515628 -135270827 + AluJo SINE Alu 1 302 0 247 281 45 34 chr12 8515767 8515856 -135270599 + MIR SINE MIR 38 127 -81 2028 104 4 0 chr12 8515909 8516188 -135270267 + AluSx SINE Alu 1 280 -32 219 36 0 0 chr12 8516189 8516217 -135270238 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2297 92 0 3 chr12 8516222 8516528 -135269927 + AluSg SINE Alu 1 305 -5 811 227 152 12 chr12 8516798 8517054 -135269401 - L1ME3A LINE L1 -53 6117 5826 1885 148 3 0 chr12 8517072 8517376 -135269079 - AluSg SINE Alu -5 305 1 791 185 7 0 chr12 8517378 8517513 -135268942 - FRAM SINE Alu -18 158 23 1622 199 55 81 chr12 8517521 8518014 -135268441 - L1ME3A LINE L1 -348 5822 5343 22 0 0 0 chr12 8518819 8518841 -135267614 + GC_rich Low_complexity Low_complexity 1 22 0 1948 97 0 17 chr12 8519036 8519354 -135267101 - AluSg1 SINE Alu 0 313 1 2112 58 14 7 chr12 8519386 8519662 -135266793 + AluSp SINE Alu 1 278 -35 22 35 0 0 chr12 8520560 8520589 -135265866 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr12 8520801 8520841 -135265614 + AT_rich Low_complexity Low_complexity 1 40 0 2254 79 3 10 chr12 8520841 8521145 -135265310 + AluSp SINE Alu 1 302 -11 2203 93 7 0 chr12 8521583 8521884 -135264571 - AluSq SINE Alu -10 303 1 246 216 149 27 chr12 8522623 8522697 -135263758 - MIR3 SINE MIR -4 204 122 2128 93 10 7 chr12 8523478 8523654 -135262801 - AluSc SINE Alu -7 302 123 189 0 0 0 chr12 8523654 8523675 -135262780 + (TG)n Simple_repeat Simple_repeat 2 22 0 2128 93 10 7 chr12 8523675 8523799 -135262656 - AluSc SINE Alu -186 123 1 1036 82 0 0 chr12 8523799 8523934 -135262521 - AluSq/x SINE Alu -177 135 1 1850 128 14 14 chr12 8523994 8524342 -135262113 - AluSq SINE Alu 0 313 1 993 89 13 19 chr12 8524734 8524892 -135261563 + BC200 scRNA scRNA 6 162 -38 1194 124 0 0 chr12 8525086 8525263 -135261192 - AluSg/x SINE Alu -1 311 135 267 31 0 0 chr12 8525263 8525295 -135261160 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1773 142 3 3 chr12 8525295 8525577 -135260878 - AluSp SINE Alu -27 286 5 2419 77 0 0 chr12 8525609 8525920 -135260535 - AluSx SINE Alu -1 311 1 232 258 97 0 chr12 8525993 8526055 -135260400 - L2 LINE L2 0 3313 3246 5510 110 8 41 chr12 8526166 8526367 -135260088 - Tigger1 DNA MER2_type 0 2418 2212 1927 126 0 17 chr12 8526367 8526669 -135259786 + AluSx SINE Alu 1 297 -15 2161 88 3 3 chr12 8526672 8526969 -135259486 + AluSx SINE Alu 1 297 -15 2220 74 0 0 chr12 8526971 8527297 -135259158 + AluY SINE Alu 1 326 0 5510 110 8 41 chr12 8527297 8527475 -135258980 - Tigger1 DNA MER2_type -209 2209 2027 2137 97 0 31 chr12 8527475 8527794 -135258661 + AluY SINE Alu 1 309 -2 5510 110 8 41 chr12 8527794 8528276 -135258179 - Tigger1 DNA MER2_type -391 2027 1577 372 194 0 14 chr12 8528305 8528377 -135258078 - AluJb SINE Alu 0 302 232 969 155 0 133 chr12 8528431 8528695 -135257760 - AluJb SINE Alu -83 229 1 2070 147 43 3 chr12 8528695 8529021 -135257434 - Tigger1 DNA MER2_type -830 1588 1250 335 85 34 0 chr12 8529022 8529081 -135257374 + L1MA3 LINE L1 5310 5370 -935 * 2419 109 3 22 chr12 8529078 8529167 -135257288 + L1MA3 LINE L1 5695 5784 -521 396 59 0 0 chr12 8529167 8529218 -135257237 + (TG)n Simple_repeat Simple_repeat 2 52 0 2419 109 3 22 chr12 8529218 8529495 -135256960 + L1MA3 LINE L1 5784 6054 -251 1340 135 0 5 chr12 8529495 8529695 -135256760 + AluSg/x SINE Alu 85 283 -27 1587 117 32 0 chr12 8529704 8529953 -135256502 + L1MA3 LINE L1 6046 6302 -3 812 152 0 0 chr12 8529953 8530078 -135256377 - FLAM_C SINE Alu -18 125 1 25 0 0 0 chr12 8530084 8530109 -135256346 + AT_rich Low_complexity Low_complexity 1 25 0 6991 128 66 32 chr12 8530111 8530549 -135255906 - Tigger1 DNA MER2_type -1159 1259 837 2201 93 10 3 chr12 8530549 8530849 -135255606 + AluSx SINE Alu 1 302 -10 6991 128 66 32 chr12 8530849 8530915 -135255540 - Tigger1 DNA MER2_type -1581 837 775 2234 96 3 0 chr12 8530915 8531217 -135255238 - AluSp SINE Alu -10 303 1 2120 119 0 10 chr12 8531217 8531528 -135254927 - AluSq SINE Alu -4 309 1 6991 128 66 32 chr12 8531528 8532239 -135254216 - Tigger1 DNA MER2_type -1642 776 1 462 263 42 0 chr12 8532239 8532357 -135254098 - L2 LINE L2 -251 3062 2940 2805 91 77 12 chr12 8532357 8532397 -135254058 - MLT2A1 LTR ERVL 0 444 408 674 34 11 0 chr12 8532397 8532486 -135253969 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 2805 91 77 12 chr12 8532486 8532862 -135253593 - MLT2A1 LTR ERVL -36 408 1 16867 120 36 81 chr12 8532862 8532937 -135253518 - ERVL-A1 LTR ERVL -7 5757 5680 2284 65 14 0 chr12 8532937 8533228 -135253227 + AluY SINE Alu 1 295 -16 16867 120 36 81 chr12 8533228 8533405 -135253050 - ERVL-A1 LTR ERVL -84 5680 5497 2244 83 10 0 chr12 8533405 8533706 -135252749 - AluSp SINE Alu -9 304 1 16867 120 36 81 chr12 8533706 8533844 -135252611 - ERVL-A1 LTR ERVL -267 5497 5354 2173 82 3 30 chr12 8533844 8534147 -135252308 - AluSg SINE Alu -15 295 1 16867 120 36 81 chr12 8534147 8534932 -135251523 - ERVL-A1 LTR ERVL -410 5354 4536 1259 101 0 0 chr12 8534932 8535110 -135251345 - AluSg/x SINE Alu 0 312 135 2163 81 0 3 chr12 8535110 8535394 -135251061 - AluSx SINE Alu -10 302 20 16867 120 36 81 chr12 8535394 8536994 -135249461 - ERVL-A1 LTR ERVL -1226 4538 2932 1001 89 7 0 chr12 8536994 8537129 -135249326 + AluSq/x SINE Alu 1 136 -177 1905 83 0 74 chr12 8537129 8537278 -135249177 + AluSg SINE Alu 1 117 -193 2070 122 3 3 chr12 8537278 8537582 -135248873 + AluSp SINE Alu 1 304 -9 1905 83 0 74 chr12 8537582 8537744 -135248711 + AluSg SINE Alu 117 289 -21 15723 69 3 24 chr12 8537744 8537979 -135248476 - ERVL-A1 LTR ERVL -2752 2902 2664 2596 39 0 0 chr12 8537979 8538290 -135248165 + AluY SINE Alu 1 311 0 15723 69 3 24 chr12 8538290 8539100 -135247355 - ERVL-A1 LTR ERVL -2990 2664 1839 2369 86 0 0 chr12 8539100 8539402 -135247053 + AluSg SINE Alu 1 302 -8 15723 69 3 24 chr12 8539402 8539889 -135246566 - ERVL-A1 LTR ERVL -3815 1839 1419 2028 91 6 70 chr12 8539889 8540220 -135246235 + AluSg SINE Alu 1 310 0 15723 69 3 24 chr12 8540220 8540704 -135245751 - ERVL-A1 LTR ERVL -4235 1419 926 718 111 0 0 chr12 8540704 8540803 -135245652 - AluSx SINE Alu -28 282 184 799 174 0 0 chr12 8540809 8540941 -135245514 - AluSx SINE Alu -179 133 2 1169 309 83 23 chr12 8540943 8541198 -135245257 - L2 LINE L2 -2192 1122 884 2271 93 0 0 chr12 8541198 8541498 -135244957 - AluSg1 SINE Alu -9 300 1 1169 309 83 23 chr12 8541498 8541759 -135244696 - L2 LINE L2 -2430 884 575 23 0 0 0 chr12 8542980 8543003 -135243452 + AT_rich Low_complexity Low_complexity 1 23 0 695 100 0 64 chr12 8543024 8543134 -135243321 - AluSg/x SINE Alu -17 295 193 317 257 57 0 chr12 8543234 8543304 -135243151 - MER91A DNA MER1_type 0 196 123 272 313 202 0 chr12 8543315 8543414 -135243041 - MER91A DNA MER1_type -20 176 58 380 257 135 0 chr12 8543515 8543663 -135242792 - Charlie2a DNA MER1_type -1224 1638 1471 1944 91 58 0 chr12 8543690 8543964 -135242491 - AluSq SINE Alu -18 295 6 581 293 16 42 chr12 8543983 8544174 -135242281 + MER5A DNA MER1_type 1 186 -3 2172 73 17 7 chr12 8544334 8544635 -135241820 - AluY SINE Alu -7 304 1 619 163 0 23 chr12 8544736 8544865 -135241590 - MER53 DNA DNA -63 126 1 2190 99 0 16 chr12 8545028 8545342 -135241113 - AluSc SINE Alu 0 309 1 196 304 54 0 chr12 8546284 8546340 -135240115 + L2 LINE L2 3209 3267 -5 196 328 150 52 chr12 8546610 8546723 -135239732 + L2 LINE L2 2655 2756 -558 2159 83 31 0 chr12 8546723 8547012 -135239443 + AluSx SINE Alu 1 298 -14 196 328 150 52 chr12 8547012 8547185 -135239270 + L2 LINE L2 2756 2969 -345 233 337 14 100 chr12 8547507 8547786 -135238669 - L2 LINE L2 -360 2954 2700 23 0 0 0 chr12 8547832 8547855 -135238600 + AT_rich Low_complexity Low_complexity 1 23 0 279 252 32 41 chr12 8547855 8547978 -135238477 - L1ME4a LINE L1 -64 6057 5936 1964 116 20 3 chr12 8547987 8548288 -135238167 - AluSp SINE Alu -5 308 3 1804 161 3 0 chr12 8548336 8548628 -135237827 + AluSx SINE Alu 6 298 -14 1617 185 7 7 chr12 8548632 8548929 -135237526 + AluJb SINE Alu 1 297 -15 2246 62 24 0 chr12 8548931 8549220 -135237235 + AluY SINE Alu 1 296 -15 255 246 120 113 chr12 8549362 8549611 -135236844 + L1MC4a LINE L1 5428 5492 -680 1605 192 4 0 chr12 8549611 8549892 -135236563 + AluSx SINE Alu 1 282 -30 255 246 120 113 chr12 8549892 8550148 -135236307 + L1MC4a LINE L1 5492 5745 -427 2391 72 0 0 chr12 8550246 8550553 -135235902 - AluY SINE Alu -4 307 1 1095 203 147 15 chr12 8550553 8550819 -135235636 - AluSx SINE Alu -1 301 1 2183 104 3 0 chr12 8550851 8551158 -135235297 - AluSq SINE Alu -5 308 1 317 241 23 35 chr12 8551165 8551252 -135235203 - L1MC4a LINE L1 -1959 5849 5764 2012 110 0 36 chr12 8551256 8551565 -135234890 - AluSx SINE Alu -14 298 1 605 314 41 29 chr12 8551566 8551811 -135234644 - L2 LINE L2 -793 2521 2274 265 91 0 0 chr12 8551811 8551844 -135234611 + U2 snRNA snRNA 1 33 -155 525 263 109 76 chr12 8551868 8552081 -135234374 - L3 LINE CR1 -120 1457 1230 2161 108 7 0 chr12 8552081 8552386 -135234069 - AluSp SINE Alu -4 309 3 525 263 109 76 chr12 8552386 8552476 -135233979 - L3 LINE CR1 -347 1230 1144 21 0 0 0 chr12 8552608 8552629 -135233826 + AT_rich Low_complexity Low_complexity 1 21 0 1016 137 0 0 chr12 8552634 8552787 -135233668 - AluSx SINE Alu -158 154 2 2095 117 7 0 chr12 8552849 8553149 -135233306 - AluSq SINE Alu -6 307 6 1874 130 0 38 chr12 8553286 8553602 -135232853 + AluSq SINE Alu 1 304 -9 290 260 39 0 chr12 8553744 8553821 -135232634 - L3 LINE CR1 -1081 496 417 986 228 25 0 chr12 8553827 8554024 -135232431 + MER20 DNA MER1_type 1 202 -17 217 281 120 60 chr12 8554035 8554138 -135232317 - L3 LINE CR1 -1157 420 302 2033 94 49 0 chr12 8554138 8554426 -135232029 - AluSp SINE Alu -11 302 1 217 281 120 60 chr12 8554426 8554489 -135231966 - L3 LINE CR1 -1275 302 244 2103 117 0 3 chr12 8555526 8555825 -135230630 + AluSq SINE Alu 1 298 -15 876 102 23 0 chr12 8556262 8556390 -135230065 + AluSq/x SINE Alu 6 136 -176 2168 99 0 3 chr12 8556391 8556693 -135229762 + AluSg SINE Alu 1 301 -9 24 32 0 0 chr12 8556693 8556724 -135229731 + AT_rich Low_complexity Low_complexity 1 31 0 2079 100 3 3 chr12 8556944 8557245 -135229210 - AluSq SINE Alu -8 305 5 1195 89 0 0 chr12 8557266 8557434 -135229021 - AluY SINE Alu -10 301 134 2071 100 3 3 chr12 8557463 8557763 -135228692 - AluSq SINE Alu -9 304 5 2227 82 0 7 chr12 8557784 8558087 -135228368 - AluY SINE Alu -10 301 1 189 0 0 0 chr12 8558204 8558225 -135228230 + (T)n Simple_repeat Simple_repeat 1 21 0 2035 117 3 7 chr12 8558425 8558734 -135227721 + AluY SINE Alu 1 308 -3 1386 174 79 4 chr12 8558774 8559027 -135227428 - AluJb SINE Alu -38 274 3 2226 92 0 0 chr12 8559320 8559615 -135226840 + AluY SINE Alu 1 295 -16 2232 67 0 42 chr12 8560076 8560389 -135226066 - AluY SINE Alu -11 300 1 2350 81 3 0 chr12 8560841 8561149 -135225306 - AluSp SINE Alu -4 309 1 670 150 0 0 chr12 8561193 8561293 -135225162 - HY3 scRNA scRNA -1 100 1 222 118 0 0 chr12 8561526 8561560 -135224895 + (T)n Simple_repeat Simple_repeat 1 34 0 1849 131 7 7 chr12 8561626 8561917 -135224538 - AluSx SINE Alu -21 291 1 2239 98 0 0 chr12 8561947 8562242 -135224213 - AluSg SINE Alu -13 297 3 433 164 0 0 chr12 8562243 8562316 -135224139 - MER5A DNA MER1_type -115 74 2 2076 104 0 7 chr12 8562412 8562709 -135223746 + AluSg SINE Alu 2 296 -14 310 209 291 0 chr12 8562815 8562901 -135223554 + MER81 DNA DNA 1 111 -3 2345 71 0 0 chr12 8563017 8563311 -135223144 + AluY SINE Alu 1 294 -17 298 333 52 46 chr12 8563319 8563472 -135222983 + MIR SINE MIR 84 237 -25 2061 110 0 10 chr12 8563537 8563837 -135222618 + AluSx SINE Alu 1 297 -15 1108 216 113 12 chr12 8563840 8564168 -135222287 + L1ME3 LINE L1 5621 5981 -181 1108 119 0 6 chr12 8564170 8564338 -135222117 + AluSg/x SINE Alu 135 301 -11 1780 104 16 49 chr12 8564429 8564737 -135221718 + AluSx SINE Alu 2 299 -13 305 279 0 0 chr12 8564767 8564853 -135221602 + L1ME3 LINE L1 6046 6131 -31 935 92 15 0 chr12 8565746 8565877 -135220578 + L1MA1 LINE L1 6164 6296 -6 303 282 20 54 chr12 8566151 8566223 -135220232 + L1ME2 LINE L1 6021 6087 -77 180 0 0 0 chr12 8566223 8566243 -135220212 + (GA)n Simple_repeat Simple_repeat 1 20 0 303 282 20 54 chr12 8566243 8566319 -135220136 + L1ME2 LINE L1 6087 6164 0 2210 91 0 7 chr12 8567003 8567312 -135219143 + AluSx SINE Alu 1 307 -5 1987 103 23 26 chr12 8567456 8567766 -135218689 + AluSx SINE Alu 4 312 0 2168 115 0 3 chr12 8567967 8568279 -135218176 + AluSx SINE Alu 1 311 -1 845 201 6 136 chr12 8568321 8568520 -135217935 - AluJo SINE Alu -17 295 72 194 0 0 37 chr12 8568520 8568547 -135217908 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1877 111 0 21 chr12 8568550 8568700 -135217755 - AluSp SINE Alu -30 283 140 2272 84 0 13 chr12 8568700 8569009 -135217446 - AluSg SINE Alu -4 306 2 1877 111 0 21 chr12 8569009 8569147 -135217308 - AluSp SINE Alu -173 140 1 845 201 6 136 chr12 8569147 8569282 -135217173 - AluJo SINE Alu -242 70 1 553 180 0 0 chr12 8569308 8569397 -135217058 - AluJ/FLAM SINE Alu -222 90 2 519 179 98 49 chr12 8569458 8569581 -135216874 + FLAM_C SINE Alu 2 130 -3 2146 93 3 7 chr12 8569588 8569879 -135216576 + AluSx SINE Alu 3 292 -20 718 205 0 0 chr12 8569920 8570042 -135216413 + FLAM_C SINE Alu 1 122 -11 257 197 0 49 chr12 8570049 8570107 -135216348 + AluYa5 SINE Alu 127 181 -120 1478 149 45 80 chr12 8570107 8570267 -135216188 + THE1C LTR MaLR 1 165 -263 2583 42 0 0 chr12 8570267 8570576 -135215879 + AluY SINE Alu 1 309 -2 1478 149 45 80 chr12 8570576 8570728 -135215727 + THE1C LTR MaLR 165 354 -74 1981 101 17 0 chr12 8570728 8571015 -135215440 - AluSg SINE Alu -14 296 5 1478 149 45 80 chr12 8571015 8571061 -135215394 + THE1C LTR MaLR 354 400 -28 1885 136 14 14 chr12 8571062 8571357 -135215098 - AluSx SINE Alu -17 295 1 219 32 32 0 chr12 8571369 8571400 -135215055 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2279 62 0 3 chr12 8571400 8571688 -135214767 - AluSq SINE Alu -1 317 1 258 167 0 0 chr12 8571689 8571731 -135214724 + THE1C LTR MaLR 385 426 -2 770 126 17 0 chr12 8571735 8571854 -135214601 + AluJb SINE Alu 181 301 -11 28 0 0 0 chr12 8571855 8571883 -135214572 + AT_rich Low_complexity Low_complexity 1 28 0 1166 80 0 0 chr12 8572208 8572389 -135214066 - AluSg/x SINE Alu 0 314 134 1988 113 10 10 chr12 8572514 8572823 -135213632 - AluSq SINE Alu -4 309 1 2078 112 3 3 chr12 8573218 8573521 -135212934 - AluSx SINE Alu -9 303 1 1451 199 33 33 chr12 8573760 8574096 -135212359 - MER58B DNA MER1_type -5 336 1 2244 82 0 10 chr12 8574495 8574801 -135211654 - AluSg SINE Alu -7 303 1 219 287 200 0 chr12 8574884 8574999 -135211456 + MIR SINE MIR 61 198 -64 2157 109 3 0 chr12 8575158 8575461 -135210994 + AluSx SINE Alu 6 309 -3 202 361 17 25 chr12 8575476 8575595 -135210860 + L2 LINE L2 3178 3295 -18 1680 143 13 27 chr12 8575903 8576203 -135210252 + AluJb SINE Alu 15 310 -2 2504 49 0 3 chr12 8576846 8577152 -135209303 - AluY SINE Alu -6 305 1 1221 185 49 15 chr12 8577934 8578199 -135208256 - AluJo SINE Alu -33 279 6 1606 119 105 35 chr12 8578396 8578681 -135207774 + AluSx SINE Alu 1 305 -7 294 29 0 0 chr12 8578959 8578993 -135207462 + U2 snRNA snRNA 3 36 -152 3501 134 103 35 chr12 8579012 8579557 -135206898 + L1MC2 LINE L1 5609 6116 -228 1943 111 0 0 chr12 8579557 8579827 -135206628 + AluSx SINE Alu 1 270 -42 342 0 0 0 chr12 8579832 8579870 -135206585 + (TC)n Simple_repeat Simple_repeat 2 39 0 * 1098 96 0 0 chr12 8579869 8580026 -135206429 + (TA)n Simple_repeat Simple_repeat 2 158 0 3501 134 103 35 chr12 8579870 8580155 -135206300 + L1MC2 LINE L1 6119 6335 -9 1809 139 3 10 chr12 8580234 8580529 -135205926 - AluSq SINE Alu -20 293 1 865 266 176 3 chr12 8580604 8580893 -135205562 + L2 LINE L2 2320 2658 -656 1995 88 34 20 chr12 8580934 8581060 -135205395 + AluSq SINE Alu 1 124 -189 2409 64 0 10 chr12 8581060 8581374 -135205081 + AluY SINE Alu 1 311 0 1995 88 34 20 chr12 8581374 8581542 -135204913 + AluSq SINE Alu 124 299 -14 1493 171 0 56 chr12 8581560 8581881 -135204574 - AluJo SINE Alu -9 303 1 630 179 4 94 chr12 8581881 8581963 -135204492 - MSTC LTR MaLR -207 158 70 2646 29 0 0 chr12 8581963 8582271 -135204184 - AluY SINE Alu -3 308 1 2307 64 7 0 chr12 8582271 8582568 -135203887 - AluSp SINE Alu -13 300 1 630 179 4 94 chr12 8582568 8582651 -135203804 - MSTC LTR MaLR -293 72 1 583 304 80 51 chr12 8582651 8583150 -135203305 + L2 LINE L2 2656 3156 -157 2058 160 34 16 chr12 8583151 8583532 -135202923 - MLT1B LTR MaLR -2 388 1 1654 169 34 62 chr12 8583538 8583610 -135202845 - MLT1B-int LTR MaLR -5 1730 1657 2467 36 0 19 chr12 8583610 8583919 -135202536 - AluY SINE Alu -7 304 2 1654 169 34 62 chr12 8583919 8584200 -135202255 - MLT1B-int LTR MaLR -78 1657 1387 2109 123 0 0 chr12 8584205 8584507 -135201948 - AluSx SINE Alu -10 302 1 2438 53 7 0 chr12 8584528 8584831 -135201624 - AluY SINE Alu -6 305 1 2187 188 137 19 chr12 8584834 8585203 -135201252 - MLT1B-int LTR MaLR -711 660 336 185 62 0 31 chr12 8585203 8585235 -135201220 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2187 188 137 19 chr12 8585235 8585309 -135201146 - MLT1B-int LTR MaLR -1035 336 272 2059 106 3 0 chr12 8585309 8585613 -135200842 - AluSp SINE Alu 0 305 1 2187 188 137 19 chr12 8585613 8585757 -135200698 - MLT1B-int LTR MaLR -1099 272 1 360 0 0 0 chr12 8585839 8585879 -135200576 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2080 96 3 7 chr12 8585881 8586174 -135200281 - AluSx SINE Alu -20 292 1 1695 193 14 43 chr12 8586174 8586452 -135200003 - MLT2D LTR ERVL -72 342 75 2247 58 14 10 chr12 8586452 8586777 -135199678 - AluSp SINE Alu 0 313 2 1695 193 14 43 chr12 8586777 8586850 -135199605 - MLT2D LTR ERVL -339 75 1 1213 161 13 113 chr12 8586879 8587190 -135199265 + AluJo SINE Alu 5 284 -28 2205 111 0 0 chr12 8587190 8587488 -135198967 - AluSx SINE Alu -14 298 1 229 368 47 0 chr12 8587493 8587599 -135198856 + MIR SINE MIR 96 206 -56 740 154 0 0 chr12 8587667 8587777 -135198678 - AluJo SINE Alu -176 136 27 497 91 15 0 chr12 8587802 8587889 -135198566 - AluY SINE Alu 0 304 217 225 313 0 0 chr12 8587889 8587953 -135198502 + L2 LINE L2 3241 3304 -9 1629 127 8 0 chr12 8587957 8588201 -135198254 + AluSg SINE Alu 60 305 -5 2294 76 0 13 chr12 8588971 8589272 -135197183 + AluY SINE Alu 1 297 -14 1807 96 69 0 chr12 8589289 8589550 -135196905 + AluSc SINE Alu 11 289 -20 1684 148 44 0 chr12 8589599 8589897 -135196558 + AluSx SINE Alu 1 311 -1 1669 168 27 0 chr12 8589925 8590223 -135196232 + AluJb SINE Alu 1 306 -6 396 141 43 11 chr12 8590223 8590315 -135196140 + GA-rich Low_complexity Low_complexity 2 96 0 220 372 100 46 chr12 8590541 8590802 -135195653 - L2 LINE L2 -52 3220 2946 2095 115 3 13 chr12 8590996 8591309 -135195146 - AluSq SINE Alu -3 310 1 1627 155 7 4 chr12 8591375 8591646 -135194809 - AluJb SINE Alu -4 308 37 683 200 7 22 chr12 8592095 8592230 -135194225 + AluJo SINE Alu 2 134 -178 1924 96 4 0 chr12 8592385 8592655 -135193800 - AluSx SINE Alu -8 304 34 707 180 32 132 chr12 8592685 8592851 -135193604 + LTR56 LTR ERV1 20 154 -291 510 178 168 0 chr12 8592851 8592958 -135193497 + FLAM_A SINE Alu 4 128 -5 707 180 32 132 chr12 8592958 8593041 -135193414 + LTR56 LTR ERV1 154 244 -201 2190 99 3 0 chr12 8593041 8593334 -135193121 - AluSx SINE Alu -18 294 1 570 151 0 0 chr12 8593334 8593420 -135193035 - AluS SINE Alu -226 87 2 844 206 0 76 chr12 8593576 8593638 -135192817 + AluJb SINE Alu 89 154 -158 2014 96 39 0 chr12 8593638 8593919 -135192536 + AluSp SINE Alu 7 298 -15 844 206 0 76 chr12 8593919 8594094 -135192361 + AluJb SINE Alu 154 308 -4 2290 65 0 3 chr12 8594355 8594647 -135191808 + AluSc SINE Alu 1 291 -18 1734 50 27 0 chr12 8594726 8594947 -135191508 + L1PA5 LINE L1 5926 6152 -2 1638 168 10 14 chr12 8594963 8595254 -135191201 + AluJo SINE Alu 1 290 -22 367 281 114 52 chr12 8595418 8595628 -135190827 - MIR SINE MIR -37 225 3 888 241 26 44 chr12 8595787 8596015 -135190440 + MER58A DNA MER1_type 1 224 0 1865 152 3 7 chr12 8596515 8596817 -135189638 - AluSx SINE Alu -11 301 1 2140 69 22 4 chr12 8596826 8597139 -135189316 - AluY SINE Alu 0 318 1 26 30 0 0 chr12 8597212 8597245 -135189210 + AT_rich Low_complexity Low_complexity 1 33 0 229 275 38 23 chr12 8597315 8597446 -135189009 - L1MDa LINE L1 -4989 1541 1409 2105 76 0 73 chr12 8597447 8597764 -135188691 - AluSg SINE Alu -16 294 1 325 272 44 20 chr12 8597771 8597890 -135188565 - L1MDa LINE L1 -5135 1408 1285 2241 83 10 0 chr12 8597939 8598241 -135188214 - AluSg SINE Alu -5 305 1 2177 116 0 0 chr12 8598242 8598543 -135187912 - AluSx SINE Alu -9 303 3 1948 136 0 3 chr12 8598546 8598847 -135187608 - AluSx SINE Alu -12 300 1 23 0 0 0 chr12 8598892 8598915 -135187540 + AT_rich Low_complexity Low_complexity 1 23 0 2057 119 10 0 chr12 8598918 8599213 -135187242 + AluSx SINE Alu 1 298 -14 236 273 91 23 chr12 8599236 8599324 -135187131 - L1MDa LINE L1 -5490 1040 947 261 233 105 23 chr12 8599488 8599574 -135186881 + L2 LINE L2 3221 3313 0 952 155 0 0 chr12 8599728 8599883 -135186572 + AluSg/x SINE Alu 154 308 -2 1861 145 0 42 chr12 8599891 8599985 -135186470 + AluSx SINE Alu 1 97 -215 2396 67 0 0 chr12 8599985 8600284 -135186171 + AluY SINE Alu 1 299 -12 1861 145 0 42 chr12 8600284 8600500 -135185955 + AluSx SINE Alu 97 298 -14 522 317 123 18 chr12 8600556 8600783 -135185672 + MIR SINE MIR 12 262 0 21 0 0 0 chr12 8601136 8601157 -135185298 + AT_rich Low_complexity Low_complexity 1 21 0 772 281 7 10 chr12 8601159 8601461 -135184994 + AluY SINE Alu 1 301 0 1085 201 0 0 chr12 8601461 8601675 -135184780 + AluSg/x SINE Alu 83 296 -14 522 317 123 18 chr12 8601731 8601958 -135184497 + MIR SINE MIR 12 262 0 1821 97 48 28 chr12 8601970 8602260 -135184195 - AluY SINE Alu -15 296 1 2217 94 0 7 chr12 8602289 8602598 -135183857 + AluSc SINE Alu 1 307 -2 2061 130 0 0 chr12 8602611 8602912 -135183543 + AluSx SINE Alu 1 301 -11 820 194 0 0 chr12 8602980 8603114 -135183341 - AluSg/x SINE Alu -23 287 154 4228 90 26 5 chr12 8603431 8603999 -135182456 - LTR19B LTR ERV1 0 580 1 2122 114 3 3 chr12 8604283 8604582 -135181873 - AluSx SINE Alu -13 299 1 358 332 20 50 chr12 8604604 8604803 -135181652 - MIR SINE MIR -46 216 24 198 143 0 0 chr12 8605491 8605526 -135180929 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 200 264 0 19 chr12 8605527 8605580 -135180875 - L2 LINE L2 0 3313 3262 2355 58 0 19 chr12 8605628 8605938 -135180517 - AluY SINE Alu -7 304 1 1969 151 12 82 chr12 8605979 8606158 -135180297 + MLT1B LTR MaLR 1 191 -199 1587 160 26 49 chr12 8606158 8606295 -135180160 + AluJo SINE Alu 12 151 -161 2298 80 7 3 chr12 8606295 8606597 -135179858 + AluSq SINE Alu 1 303 -10 1587 160 26 49 chr12 8606597 8606765 -135179690 + AluJo SINE Alu 151 310 -2 1969 151 12 82 chr12 8606765 8607001 -135179454 + MLT1B LTR MaLR 191 387 -3 2099 85 0 50 chr12 8607304 8607621 -135178834 - AluSg1 SINE Alu -8 301 1 2098 113 3 7 chr12 8607969 8608271 -135178184 + AluSq SINE Alu 1 301 -12 301 224 112 65 chr12 8608373 8608480 -135177975 + MER5B DNA MER1_type 2 113 -65 2271 198 40 28 chr12 8608583 8608644 -135177811 - MLT1D LTR MaLR -3 502 443 1222 169 177 0 chr12 8608644 8608893 -135177562 - AluSx SINE Alu -9 293 1 2271 198 40 28 chr12 8608893 8609327 -135177128 - MLT1D LTR MaLR -62 443 1 1858 150 0 0 chr12 8609332 8609618 -135176837 - AluSx SINE Alu -13 299 14 1646 178 0 7 chr12 8609954 8610252 -135176203 + AluJo SINE Alu 1 296 -16 2164 93 3 16 chr12 8611293 8611603 -135174852 - AluSq SINE Alu -7 306 1 2289 94 0 0 chr12 8611663 8611961 -135174494 - AluSx SINE Alu -14 298 1 292 165 0 0 chr12 8612079 8612130 -135174325 - AluJo SINE Alu -7 295 251 1098 171 0 5 chr12 8612132 8612319 -135174136 - AluJo SINE Alu -126 186 1 942 163 12 12 chr12 8612321 8612493 -135173962 - FAM SINE Alu -3 172 1 23 0 0 0 chr12 8612494 8612517 -135173938 + AT_rich Low_complexity Low_complexity 1 23 0 1085 180 48 89 chr12 8612522 8612641 -135173814 + L1M4 LINE L1 4683 4805 -1341 2045 119 3 0 chr12 8612641 8612944 -135173511 + AluSx SINE Alu 1 304 -8 1085 180 48 89 chr12 8612944 8613045 -135173410 + L1M4 LINE L1 4805 4889 -1257 206 32 32 0 chr12 8613045 8613076 -135173379 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1085 180 48 89 chr12 8613076 8613170 -135173285 + L1M4 LINE L1 4889 4985 -1161 1993 99 0 34 chr12 8613397 8613717 -135172738 + AluSq SINE Alu 1 310 0 209 236 36 0 chr12 8613747 8613802 -135172653 + CT-rich Low_complexity Low_complexity 2 58 0 772 209 7 7 chr12 8613824 8613972 -135172483 - AluJo SINE Alu -163 149 2 525 253 104 12 chr12 8613976 8614225 -135172230 + L1MC4 LINE L1 7768 8039 -3 1104 172 18 9 chr12 8614282 8614503 -135171952 + AluJb SINE Alu 87 309 -3 947 146 0 62 chr12 8614602 8614780 -135171675 + AluSp SINE Alu 137 303 -10 573 221 159 12 chr12 8614797 8614975 -135171480 + MIR SINE MIR 49 251 -11 2090 111 0 0 chr12 8615082 8615371 -135171084 + AluSx SINE Alu 1 289 -23 2023 121 23 3 chr12 8615548 8615854 -135170601 + AluSq SINE Alu 2 313 0 365 118 0 2 chr12 8615951 8616017 -135170438 + Alu SINE Alu 244 299 -3 3656 182 92 26 chr12 8616089 8616797 -135169658 + MER21B LTR ERV1 1 762 -101 2102 121 7 0 chr12 8616797 8617103 -135169352 + AluSq SINE Alu 1 308 -5 3656 182 92 26 chr12 8617103 8617136 -135169319 + MER21B LTR ERV1 762 791 -72 651 192 233 0 chr12 8618346 8618518 -135167937 + L1MC1 LINE L1 6110 6321 -12 192 125 0 0 chr12 8618659 8618691 -135167764 + (A)n Simple_repeat Simple_repeat 1 32 0 1426 136 14 85 chr12 8618832 8619127 -135167328 - AluJb SINE Alu -24 288 15 1954 113 0 7 chr12 8619135 8619427 -135167028 - AluSq SINE Alu -23 290 1 2375 68 0 3 chr12 8619928 8620237 -135166218 + AluY SINE Alu 1 308 -3 1221 77 6 22 chr12 8620243 8620424 -135166031 + AluSq SINE Alu 120 297 -16 648 239 176 10 chr12 8620468 8620673 -135165782 - MER8 DNA MER2_type 0 239 1 1594 44 0 10 chr12 8620710 8620914 -135165541 - AluY SINE Alu -28 283 82 924 130 7 0 chr12 8620923 8621069 -135165386 - AluJb SINE Alu -24 288 142 539 178 110 0 chr12 8622070 8622188 -135164267 + FLAM_A SINE Alu 2 132 -1 2094 84 17 3 chr12 8622196 8622493 -135163962 + AluSg SINE Alu 1 301 -9 2394 64 0 0 chr12 8622727 8623038 -135163417 + AluY SINE Alu 1 311 0 261 0 0 0 chr12 8623192 8623221 -135163234 + (A)n Simple_repeat Simple_repeat 1 29 0 234 62 0 0 chr12 8623765 8623797 -135162658 + (T)n Simple_repeat Simple_repeat 1 32 0 609 118 0 64 chr12 8624459 8624569 -135161886 + FRAM SINE Alu 56 158 -18 392 217 123 9 chr12 8624586 8624692 -135161763 + MER5A DNA MER1_type 45 162 -27 188 167 0 0 chr12 8624719 8624749 -135161706 + MER5A DNA MER1_type 148 177 -12 1968 136 0 37 chr12 8624959 8625095 -135161360 + AluSx SINE Alu 1 141 -171 2111 109 0 0 chr12 8625095 8625389 -135161066 + AluY SINE Alu 1 294 -17 1968 136 0 37 chr12 8625389 8625575 -135160880 + AluSx SINE Alu 141 311 -1 337 296 58 108 chr12 8625587 8625728 -135160727 + HAL1 LINE L1 2188 2335 -172 2078 132 0 3 chr12 8625728 8626038 -135160417 + AluSq SINE Alu 1 309 -4 337 296 58 108 chr12 8626038 8626061 -135160394 + HAL1 LINE L1 2335 2358 -149 1884 133 36 7 chr12 8626061 8626363 -135160092 + AluSx SINE Alu 1 311 -1 337 296 58 108 chr12 8626363 8626437 -135160018 + HAL1 LINE L1 2358 2415 -92 1811 137 37 0 chr12 8626561 8626860 -135159595 + AluSg SINE Alu 1 310 0 1192 149 0 5 chr12 8627111 8627305 -135159150 + AluJo SINE Alu 1 193 -119 1567 90 24 0 chr12 8627312 8627524 -135158931 - AluSx SINE Alu -95 217 1 417 165 13 0 chr12 8627524 8627603 -135158852 - MER39 LTR ERV1 -45 662 583 1410 159 14 41 chr12 8627603 8627898 -135158557 + AluJo SINE Alu 1 287 -25 219 139 0 0 chr12 8627956 8627992 -135158463 + (TG)n Simple_repeat Simple_repeat 1 36 0 2446 62 3 0 chr12 8628068 8628375 -135158080 - AluSp SINE Alu -5 308 1 2306 73 3 3 chr12 8628396 8628709 -135157746 - AluSp SINE Alu 0 313 1 2174 94 3 0 chr12 8629468 8629767 -135156688 - AluSx SINE Alu -11 301 2 632 134 10 0 chr12 8629768 8629865 -135156590 + L1MC3 LINE L1 6718 6815 -970 464 125 0 0 chr12 8629877 8629941 -135156514 + AluJ/FLAM SINE Alu 3 66 -246 323 224 30 0 chr12 8629941 8630008 -135156447 - LTR9B LTR ERV1 0 644 576 1752 169 7 0 chr12 8630009 8630311 -135156144 + AluSg SINE Alu 1 304 -6 834 152 103 0 chr12 8630324 8630489 -135155966 + L1MC3 LINE L1 6887 7068 -717 885 198 0 0 chr12 8630498 8630680 -135155775 - AluJo SINE Alu -12 300 119 372 153 133 102 chr12 8630707 8630805 -135155650 + L1MC3 LINE L1 7070 7170 -615 1754 216 39 44 chr12 8630894 8631305 -135155150 + LTR2 LTR ERV1 41 449 0 2188 114 7 0 chr12 8631324 8631632 -135154823 + AluSg SINE Alu 1 310 0 1781 123 88 0 chr12 8631664 8631949 -135154506 + AluSx SINE Alu 1 310 -2 244 150 0 25 chr12 8631968 8632008 -135154447 - Alu SINE Alu -263 39 1 1849 111 13 30 chr12 8632060 8632358 -135154097 + AluSg SINE Alu 1 293 -17 37 52 0 0 chr12 8632358 8632416 -135154039 + AT_rich Low_complexity Low_complexity 1 58 0 1303 193 20 20 chr12 8632489 8632789 -135153666 + AluSp SINE Alu 1 300 -13 2137 95 20 0 chr12 8632848 8633142 -135153313 - AluSx SINE Alu -12 300 1 704 154 46 23 chr12 8633145 8633275 -135153180 - AluJo/FLAM SINE Alu -169 133 1 1881 91 0 114 chr12 8633537 8633878 -135152577 - AluSg SINE Alu -8 302 1 1565 155 25 41 chr12 8634003 8634320 -135152135 + AluJb SINE Alu 1 312 0 285 299 180 50 chr12 8634340 8634619 -135151836 - L2 LINE L2 -311 3002 2687 2025 90 16 39 chr12 8634619 8634930 -135151525 + AluSx SINE Alu 1 304 -8 258 347 0 0 chr12 8634944 8635016 -135151439 + L2 LINE L2 3242 3313 0 303 210 86 12 chr12 8635067 8635148 -135151307 + MER5A DNA MER1_type 35 121 -68 454 258 39 79 chr12 8635533 8635711 -135150744 + MIR SINE MIR 53 223 -39 420 253 0 0 chr12 8636345 8636428 -135150027 - L2 LINE L2 0 3272 3190 1588 113 36 0 chr12 8636461 8636683 -135149772 - MER30 DNA MER1_type 0 230 1 1770 165 0 13 chr12 8636725 8637041 -135149414 - AluJo SINE Alu 0 312 1 2305 88 3 0 chr12 8637247 8637553 -135148902 - AluSp SINE Alu -6 307 1 277 356 0 0 chr12 8637659 8637749 -135148706 + L2 LINE L2 3183 3272 0 675 154 14 77 chr12 8637812 8637955 -135148500 - FLAM_A SINE Alu -1 141 8 435 313 126 47 chr12 8638091 8638196 -135148259 + MIR SINE MIR 32 127 -135 2312 39 7 4 chr12 8638196 8638499 -135147956 + AluY SINE Alu 2 305 0 435 313 126 47 chr12 8638499 8638606 -135147849 + MIR SINE MIR 127 262 0 673 233 0 0 chr12 8638643 8638772 -135147683 + FLAM_A SINE Alu 3 131 -2 270 81 0 0 chr12 8638792 8638829 -135147626 + (A)n Simple_repeat Simple_repeat 1 37 0 203 294 39 78 chr12 8638885 8638964 -135147491 + MIR3 SINE MIR 8 85 -123 2142 88 3 0 chr12 8638964 8639278 -135147177 + AluSq SINE Alu 1 315 0 203 294 39 78 chr12 8639278 8639299 -135147156 + MIR3 SINE MIR 85 105 -103 2119 110 0 25 chr12 8639456 8639773 -135146682 + AluSx SINE Alu 1 309 -3 1837 116 4 0 chr12 8639850 8640108 -135146347 + AluSx SINE Alu 53 311 -1 345 307 80 22 chr12 8640119 8640256 -135146199 + MIR SINE MIR 2 146 -116 1175 108 18 0 chr12 8640257 8640423 -135146032 + L1PA12 LINE L1 5993 6161 -7 2436 44 0 16 chr12 8640423 8640738 -135145717 + AluY SINE Alu 1 310 -1 1924 136 0 13 chr12 8640749 8641057 -135145398 + AluSx SINE Alu 1 304 -8 555 273 73 14 chr12 8641121 8641341 -135145114 + L1ME LINE L1 5378 5610 -511 842 171 8 139 chr12 8641344 8641589 -135144866 + AluJo SINE Alu 2 214 -98 831 120 0 8 chr12 8641637 8641770 -135144685 + FLAM_C SINE Alu 2 133 0 2127 116 0 0 chr12 8642065 8642366 -135144089 + AluSx SINE Alu 1 301 -11 1831 120 39 3 chr12 8642584 8642701 -135143754 + AluSc SINE Alu 3 114 -195 272 27 27 0 chr12 8642701 8642738 -135143717 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1831 120 39 3 chr12 8642738 8642903 -135143552 + AluSc SINE Alu 114 295 -14 2074 107 0 0 chr12 8643433 8643737 -135142718 + AluSg SINE Alu 1 304 0 21 36 0 0 chr12 8644703 8644731 -135141724 + AT_rich Low_complexity Low_complexity 1 28 0 187 318 83 30 chr12 8646073 8646171 -135140284 + MIR SINE MIR 53 161 -101 2130 107 3 0 chr12 8646171 8646469 -135139986 + AluSq SINE Alu 1 299 -14 187 318 83 30 chr12 8646469 8646502 -135139953 + MIR SINE MIR 161 191 -71 858 140 48 131 chr12 8646678 8646777 -135139678 + MER2 DNA MER2_type 1 72 -273 2110 108 0 0 chr12 8646777 8647063 -135139392 + AluSc SINE Alu 3 288 -21 858 140 48 131 chr12 8647063 8647192 -135139263 + MER2 DNA MER2_type 72 210 -135 2274 59 3 13 chr12 8647298 8647601 -135138854 + AluY SINE Alu 1 300 -11 939 167 26 0 chr12 8647601 8647757 -135138698 + AluJb SINE Alu 137 296 -16 417 255 59 0 chr12 8647818 8647920 -135138535 - FLAM_A SINE Alu -21 112 5 1858 131 7 0 chr12 8647956 8648247 -135138208 - AluSx SINE Alu -19 293 1 1899 146 0 0 chr12 8648370 8648664 -135137791 + AluSp SINE Alu 1 294 -19 858 146 0 0 chr12 8648664 8648794 -135137661 + AluJo/FRAM SINE Alu 134 263 -49 1507 156 0 77 chr12 8648832 8649158 -135137297 + AluJo SINE Alu 12 312 0 22 70 0 0 chr12 8649183 8649226 -135137229 + AT_rich Low_complexity Low_complexity 1 43 0 2340 73 0 13 chr12 8649230 8649545 -135136910 + AluY SINE Alu 1 311 0 225 0 0 0 chr12 8649597 8649622 -135136833 + (T)n Simple_repeat Simple_repeat 1 25 0 2276 76 0 13 chr12 8649727 8650031 -135136424 + AluY SINE Alu 1 300 -11 307 300 131 38 chr12 8650055 8650345 -135136110 + L1ME LINE L1 319 635 -5435 2092 67 3 63 chr12 8650716 8651031 -135135424 + AluSc SINE Alu 1 296 -13 206 323 73 10 chr12 8651465 8651561 -135134894 - L2 LINE L2 -516 2798 2697 1798 140 4 4 chr12 8651937 8652242 -135134213 - AluSg SINE Alu 0 305 1 228 247 53 113 chr12 8652243 8652342 -135134113 - L1MC/D LINE L1 -1982 5826 5737 2113 112 10 0 chr12 8652342 8652646 -135133809 + AluSc SINE Alu 1 307 -2 228 247 53 113 chr12 8652646 8652696 -135133759 - L1MC/D LINE L1 -2071 5737 5686 193 244 186 35 chr12 8652846 8652932 -135133523 - MIR SINE MIR -111 151 53 1736 163 0 19 chr12 8652940 8653253 -135133202 - AluSx SINE Alu -5 307 1 1664 180 3 3 chr12 8653255 8653561 -135132894 - AluJb SINE Alu -6 306 1 2074 118 0 16 chr12 8653770 8654085 -135132370 - AluSg SINE Alu 0 310 1 1623 186 3 6 chr12 8654318 8654630 -135131825 - AluJo SINE Alu 0 312 2 372 220 96 0 chr12 8654803 8654909 -135131546 + L1MC4 LINE L1 6699 6795 -1166 1129 127 0 0 chr12 8654943 8655109 -135131346 + AluSq SINE Alu 130 295 -18 2106 82 4 4 chr12 8655109 8655423 -135131032 + AluSg SINE Alu 1 314 0 422 211 0 0 chr12 8655500 8655571 -135130884 + AluJ/FLAM SINE Alu 2 72 -230 1107 132 0 17 chr12 8655571 8655745 -135130710 - AluSq SINE Alu -142 171 1 1194 109 77 0 chr12 8656030 8656213 -135130242 + AluSg/x SINE Alu 103 299 -13 1997 111 11 0 chr12 8656213 8656520 -135129935 + AluSg SINE Alu 1 310 0 1256 171 0 38 chr12 8656686 8656925 -135129530 - AluJo SINE Alu -82 230 1 289 304 51 65 chr12 8657228 8657366 -135129089 + MIR SINE MIR 5 140 -122 1574 174 0 15 chr12 8657377 8657647 -135128808 + AluJo SINE Alu 1 266 -46 220 84 189 32 chr12 8657651 8657746 -135128709 + (TTTAA)n Simple_repeat Simple_repeat 1 110 0 1849 140 0 10 chr12 8657757 8658057 -135128398 + AluSq SINE Alu 1 297 -16 700 88 10 0 chr12 8658065 8658167 -135128288 + HY1 scRNA scRNA 3 105 -7 2037 117 10 0 chr12 8658291 8658581 -135127874 - AluSg SINE Alu -17 293 1 1870 133 30 0 chr12 8658649 8658951 -135127504 - AluSx SINE Alu -1 311 1 1683 152 28 0 chr12 8660147 8660436 -135126019 - AluSx SINE Alu -15 297 1 1418 217 14 0 chr12 8660579 8660874 -135125581 + AluJb SINE Alu 1 299 -13 1909 151 7 3 chr12 8660874 8661173 -135125282 + AluSq SINE Alu 1 300 -13 2000 111 7 3 chr12 8661177 8661466 -135124989 + AluSx SINE Alu 3 292 -20 2230 94 10 3 chr12 8661471 8661779 -135124676 + AluSg SINE Alu 1 310 0 1011 149 0 12 chr12 8662198 8662410 -135124045 - AluSq SINE Alu 0 329 120 2384 50 0 3 chr12 8662909 8663210 -135123245 + AluY SINE Alu 1 300 -11 1440 181 17 13 chr12 8664158 8664456 -135121999 + AluJb SINE Alu 1 299 -13 1560 110 0 13 chr12 8664486 8664713 -135121742 + AluSq SINE Alu 1 224 -89 445 114 0 0 chr12 8664768 8664838 -135121617 + Alu SINE Alu 239 308 -3 1989 109 10 14 chr12 8665852 8666146 -135120309 - AluSp SINE Alu -20 293 1 1976 111 17 3 chr12 8666336 8666633 -135119822 + AluSx SINE Alu 1 301 -11 27 0 0 0 chr12 8666742 8666769 -135119686 + AT_rich Low_complexity Low_complexity 1 27 0 1612 153 0 8 chr12 8667165 8667433 -135119022 + AluSx SINE Alu 46 311 -1 1428 216 10 10 chr12 8667486 8667782 -135118673 + AluJb SINE Alu 2 297 -5 21 0 0 0 chr12 8669396 8669417 -135117038 + AT_rich Low_complexity Low_complexity 1 21 0 2036 113 0 0 chr12 8669423 8669715 -135116740 + AluSx SINE Alu 1 292 -20 2036 115 0 16 chr12 8670989 8671293 -135115162 + AluSx SINE Alu 1 299 -13 1622 90 0 0 chr12 8671640 8671852 -135114603 + MER41A LTR ERV1 1 212 -342 257 138 0 17 chr12 8671997 8672055 -135114400 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 244 241 12 72 chr12 8672064 8672093 -135114362 + L2 LINE L2 3188 3217 -96 2222 84 3 7 chr12 8672093 8672391 -135114064 - AluSq SINE Alu -11 302 6 244 241 12 72 chr12 8672391 8672444 -135114011 + L2 LINE L2 3217 3265 -48 553 218 81 0 chr12 8672459 8672583 -135113872 + MER5A DNA MER1_type 28 161 -28 2196 95 7 10 chr12 8673053 8673359 -135113096 + AluSp SINE Alu 1 305 -8 593 152 10 0 chr12 8674027 8674126 -135112329 + HY1 scRNA scRNA 12 111 -1 1652 93 0 40 chr12 8674274 8674521 -135111934 + AluSg SINE Alu 1 237 -73 1830 117 18 0 chr12 8674554 8674827 -135111628 + AluSg SINE Alu 1 278 -32 868 100 6 25 chr12 8674827 8674987 -135111468 + (GAAA)n Simple_repeat Simple_repeat 1 157 0 440 225 50 100 chr12 8674991 8675052 -135111403 + MER58 DNA MER1_type 19 82 -2338 2341 75 7 0 chr12 8675052 8675359 -135111096 - AluSx SINE Alu -3 309 1 440 225 50 100 chr12 8675359 8675457 -135110998 + MER58 DNA MER1_type 81 170 -2250 2045 123 3 0 chr12 8675505 8675814 -135110641 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr12 8675934 8675956 -135110499 + GC_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr12 8676407 8676442 -135110013 + AT_rich Low_complexity Low_complexity 1 35 0 487 165 0 44 chr12 8676831 8676922 -135109533 - AluS SINE Alu -225 88 2 2149 101 0 3 chr12 8676951 8677247 -135109208 + AluSg SINE Alu 1 295 -15 271 143 0 0 chr12 8677248 8677290 -135109165 + Charlie5 DNA MER1_type 2544 2585 -27 180 0 0 0 chr12 8678069 8678089 -135108366 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1318 112 11 0 chr12 8678093 8678281 -135108174 - AluSg/x SINE Alu -37 273 84 1337 127 53 133 chr12 8678740 8679062 -135107393 - AluJo SINE Alu -14 298 3 604 179 17 8 chr12 8679121 8679238 -135107217 + FLAM_C SINE Alu 26 143 0 2122 77 0 48 chr12 8679674 8679986 -135106469 - AluSx SINE Alu -15 297 1 574 188 0 0 chr12 8680831 8680932 -135105523 + FLAM_A SINE Alu 1 101 -41 2168 102 3 0 chr12 8681338 8681643 -135104812 - AluSx SINE Alu -5 307 2 2194 111 0 0 chr12 8682331 8682629 -135103826 - AluSq SINE Alu -15 298 1 861 184 0 0 chr12 8682835 8682982 -135103473 - AluJb SINE Alu -30 282 136 2167 107 0 3 chr12 8683020 8683330 -135103125 + AluSg1 SINE Alu 1 309 0 208 213 43 0 chr12 8683751 8683798 -135102657 + MIR SINE MIR 183 231 -31 2109 106 20 0 chr12 8683890 8684191 -135102264 - AluSx SINE Alu -4 308 2 2067 100 28 0 chr12 8684239 8684530 -135101925 - AluSg1 SINE Alu -10 299 1 1044 120 0 6 chr12 8684904 8685062 -135101393 - AluSx SINE Alu -12 300 144 2147 91 3 13 chr12 8685091 8685389 -135101066 - AluSg SINE Alu -15 295 1 496 31 0 0 chr12 8685412 8685477 -135100978 - MER41B LTR ERV1 -88 547 483 872 111 37 0 chr12 8685477 8685612 -135100843 - AluSx SINE Alu -173 140 1 1197 97 11 27 chr12 8686023 8686208 -135100247 + AluSg/x SINE Alu 128 309 -1 523 263 99 7 chr12 8686211 8686363 -135100092 + AluJo/FRAM SINE Alu 137 302 0 957 102 0 38 chr12 8686364 8686467 -135099988 + (GAAA)n Simple_repeat Simple_repeat 1 278 0 957 102 0 38 chr12 8686467 8686653 -135099802 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 623 133 62 47 chr12 8687117 8687245 -135099210 + FLAM_A SINE Alu 1 130 -3 2082 118 3 10 chr12 8687676 8687989 -135098466 - AluY SINE Alu 0 311 1 2061 121 3 0 chr12 8687994 8688292 -135098163 - AluSx SINE Alu -13 299 1 1082 107 0 0 chr12 8688476 8688626 -135097829 + AluSq/x SINE Alu 1 150 -162 195 42 0 0 chr12 8688640 8688664 -135097791 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 2039 114 17 0 chr12 8688721 8689019 -135097436 - AluSx SINE Alu -9 303 1 1974 121 0 0 chr12 8689195 8689497 -135096958 - AluSx SINE Alu 0 302 1 2126 91 10 0 chr12 8689732 8690030 -135096425 - AluSp SINE Alu -12 301 1 2083 128 0 0 chr12 8690066 8690370 -135096085 - AluSx SINE Alu -8 304 1 25 0 0 0 chr12 8690416 8690441 -135096014 + AT_rich Low_complexity Low_complexity 1 25 0 650 185 0 52 chr12 8690627 8690762 -135095693 + FLAM_A SINE Alu 1 128 -5 2306 60 7 13 chr12 8690782 8691083 -135095372 - AluY SINE Alu -10 301 3 776 180 60 80 chr12 8691229 8691429 -135095026 - MER21A LTR ERV1 0 931 736 1172 142 31 62 chr12 8691592 8691754 -135094701 + Tigger5 DNA MER2_type 2072 2225 -98 2327 86 3 0 chr12 8691754 8692057 -135094398 - AluSp SINE Alu -9 304 1 1172 142 31 62 chr12 8692057 8692154 -135094301 + Tigger5 DNA MER2_type 2225 2323 0 970 183 83 121 chr12 8692154 8692245 -135094210 + L1ME2 LINE L1 5236 5329 -833 1959 127 0 3 chr12 8692245 8692529 -135093926 + AluSq SINE Alu 1 283 -30 970 183 83 121 chr12 8692529 8692820 -135093635 + L1ME2 LINE L1 5329 5603 -559 831 168 0 8 chr12 8692823 8692954 -135093501 + FLAM_C SINE Alu 1 130 -13 1112 211 21 28 chr12 8692955 8693238 -135093217 + L1ME2 LINE L1 5581 5864 -298 431 19 0 0 chr12 8693246 8693298 -135093157 + AluSq/x SINE Alu 82 133 -179 753 198 46 72 chr12 8693340 8693498 -135092957 + L1ME2 LINE L1 5871 6023 -141 1997 139 0 10 chr12 8693498 8693808 -135092647 + AluSx SINE Alu 1 307 -5 753 198 46 72 chr12 8693808 8693886 -135092569 + L1ME2 LINE L1 6023 6101 -63 2201 196 70 15 chr12 8694124 8694594 -135091861 - MLT1D LTR MaLR -2 503 8 1880 135 10 0 chr12 8694594 8694897 -135091558 - AluSx SINE Alu -6 306 1 2304 87 0 0 chr12 8695318 8695616 -135090839 + AluSq SINE Alu 1 298 -15 2330 80 0 3 chr12 8695935 8696237 -135090218 + AluSq SINE Alu 1 301 -12 186 43 0 0 chr12 8696280 8696303 -135090152 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 486 0 0 0 chr12 8696723 8696777 -135089678 + (TG)n Simple_repeat Simple_repeat 2 55 0 2134 110 0 0 chr12 8696932 8697231 -135089224 + AluSx SINE Alu 1 299 -13 687 188 0 43 chr12 8697469 8697607 -135088848 - FLAM_C SINE Alu -1 132 1 1697 143 49 0 chr12 8697610 8697897 -135088558 - AluJo SINE Alu -11 301 1 273 325 121 24 chr12 8698080 8698286 -135088169 - L2 LINE L2 -496 2818 2593 2110 108 7 0 chr12 8698375 8698672 -135087783 + AluSp SINE Alu 1 299 -14 780 273 47 17 chr12 8699571 8699879 -135086576 + L2 LINE L2 2739 3070 -243 2161 107 0 16 chr12 8699922 8700230 -135086225 - AluSx SINE Alu -9 303 1 1589 168 23 23 chr12 8700233 8700424 -135086031 - AluJo SINE Alu -2 310 117 192 40 0 0 chr12 8700424 8700449 -135086006 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1589 168 23 23 chr12 8700449 8700567 -135085888 - AluJo SINE Alu -194 118 1 362 21 21 0 chr12 8701002 8701049 -135085406 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 2108 125 8 64 chr12 8701097 8701304 -135085151 - L1PA16 LINE L1 -3 6163 5987 2215 80 0 41 chr12 8701304 8701618 -135084837 - AluY SINE Alu -10 301 1 2108 125 8 64 chr12 8701618 8701802 -135084653 - L1PA16 LINE L1 -179 5987 5794 1932 109 20 7 chr12 8701811 8702105 -135084350 - AluSx SINE Alu -14 298 1 662 90 0 10 chr12 8702116 8702216 -135084239 + (TTCC)n Simple_repeat Simple_repeat 1 99 0 2087 107 3 0 chr12 8702216 8702506 -135083949 - AluSg SINE Alu -19 291 1 2347 77 0 0 chr12 8702532 8702842 -135083613 - AluY SINE Alu -1 310 1 996 113 0 134 chr12 8702843 8703081 -135083374 - L1MC/D LINE L1 -628 5614 5409 198 0 0 0 chr12 8703134 8703156 -135083299 + (TG)n Simple_repeat Simple_repeat 1 22 0 270 56 0 0 chr12 8703171 8703207 -135083248 + (TA)n Simple_repeat Simple_repeat 2 37 0 2502 65 3 0 chr12 8703207 8703517 -135082938 - AluSp SINE Alu -2 311 1 23 33 0 0 chr12 8703517 8703547 -135082908 + AT_rich Low_complexity Low_complexity 1 30 0 1937 109 60 0 chr12 8703558 8703842 -135082613 - AluSp SINE Alu -12 301 1 1900 135 0 0 chr12 8704166 8704495 -135081960 + AluSx SINE Alu 1 329 0 32 43 0 0 chr12 8704600 8704646 -135081809 + AT_rich Low_complexity Low_complexity 1 46 0 1522 180 0 11 chr12 8704647 8704931 -135081524 - AluJb SINE Alu -23 289 9 353 75 19 0 chr12 8705448 8705501 -135080954 + (CA)n Simple_repeat Simple_repeat 2 55 0 710 335 11 27 chr12 8705714 8705977 -135080478 - MIR SINE MIR -2 260 2 788 164 0 8 chr12 8706392 8706526 -135079929 + FLAM_C SINE Alu 1 133 0 1306 214 36 0 chr12 8706543 8706819 -135079636 - AluJo SINE Alu -22 290 5 2180 97 10 13 chr12 8706993 8707301 -135079154 - AluSx SINE Alu -5 307 1 2201 100 3 0 chr12 8707303 8707603 -135078852 - AluSq SINE Alu -12 301 1 1084 99 0 47 chr12 8707985 8708157 -135078298 + FRAM SINE Alu 1 163 -13 203 306 0 0 chr12 8708173 8708235 -135078220 + CT-rich Low_complexity Low_complexity 4 65 0 663 204 8 0 chr12 8708904 8709036 -135077419 + FLAM_A SINE Alu 1 133 0 2093 110 0 7 chr12 8709300 8709620 -135076835 + AluSg SINE Alu 1 310 0 21 0 0 0 chr12 8709840 8709861 -135076594 + AT_rich Low_complexity Low_complexity 1 21 0 1478 172 50 27 chr12 8710278 8710408 -135076047 + AluJo SINE Alu 7 132 -180 2374 25 0 7 chr12 8710408 8710732 -135075723 + AluY SINE Alu 1 322 0 1478 172 50 27 chr12 8710732 8710897 -135075558 + AluJo SINE Alu 132 310 -2 2363 51 10 0 chr12 8710900 8711196 -135075259 - AluY SINE Alu -12 299 1 645 215 126 0 chr12 8711658 8711793 -135074662 + FRAM SINE Alu 1 151 -25 822 154 0 0 chr12 8711796 8711926 -135074529 + FLAM_C SINE Alu 1 130 -13 197 62 0 31 chr12 8711934 8711966 -135074489 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 211 148 16 33 chr12 8712069 8712101 -135074354 + (TTA)n Simple_repeat Simple_repeat 1 33 -27 843 215 0 41 chr12 8712101 8712273 -135074182 - FAM SINE Alu -10 165 1 211 148 16 33 chr12 8712273 8712301 -135074154 + (TTA)n Simple_repeat Simple_repeat 33 60 0 1796 142 0 41 chr12 8712413 8712729 -135073726 + AluJb SINE Alu 1 303 -9 23 0 0 0 chr12 8712773 8712796 -135073659 + AT_rich Low_complexity Low_complexity 1 23 0 1767 198 3 15 chr12 8713071 8713395 -135073060 - MLT1F LTR MaLR -25 517 198 822 160 0 0 chr12 8713414 8713539 -135072916 - FLAM_C SINE Alu -17 126 2 734 266 5 26 chr12 8713539 8713731 -135072724 - MLT1F LTR MaLR -340 202 15 475 74 12 86 chr12 8713893 8713974 -135072481 + MER52C LTR ERV1 952 1026 -252 * 808 155 115 104 chr12 8713973 8714165 -135072290 - LTR56 LTR ERV1 -164 281 84 2431 58 0 3 chr12 8714165 8714474 -135071981 - AluY SINE Alu -3 308 1 808 155 115 104 chr12 8714474 8714559 -135071896 - LTR56 LTR ERV1 -361 84 1 2218 89 0 0 chr12 8714735 8715026 -135071429 + AluSq SINE Alu 1 291 -22 185 0 40 0 chr12 8715030 8715055 -135071400 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 346 214 0 125 chr12 8715063 8715175 -135071280 + MER61E LTR ERV1 4 101 -468 535 141 0 0 chr12 8715888 8715966 -135070489 + MSTB LTR MaLR 1 78 -348 3020 179 60 24 chr12 8715967 8716582 -135069873 - LTR9B LTR ERV1 -1 643 7 1292 213 2 11 chr12 8716582 8716855 -135069600 - HUERS-P3 LTR ERV1 0 8919 7158 772 178 26 36 chr12 8717159 8717368 -135069087 - HUERS-P3b LTR ERV1 -551 4329 1860 280 170 7 185 chr12 8717340 8717424 -135069031 - HUERS-P3b LTR ERV1 -462 6956 6903 * 2271 81 3 3 chr12 8717424 8717722 -135068733 - AluSp SINE Alu -15 298 1 280 170 7 185 chr12 8717722 8717772 -135068683 - HUERS-P3b LTR ERV1 -515 6903 6846 * 4171 190 37 5 chr12 8717762 8718510 -135067945 - HUERS-P3b LTR ERV1 -1986 6933 6162 * 4485 108 39 20 chr12 8718495 8718948 -135067507 - HUERS-P3b LTR ERV1 -3342 5577 5105 2238 77 10 0 chr12 8718948 8719248 -135067207 - AluY SINE Alu -8 303 1 4485 108 39 20 chr12 8719248 8719458 -135066997 - HUERS-P3b LTR ERV1 -3814 5105 4901 828 217 7 0 chr12 8719459 8719602 -135066853 - HUERS-P3b LTR ERV1 -4237 4682 4539 7695 150 33 14 chr12 8719605 8720675 -135065780 - HUERS-P3b LTR ERV1 -5314 2104 1834 2197 97 0 0 chr12 8720675 8720963 -135065492 - AluSc SINE Alu -21 288 1 7695 150 33 14 chr12 8720963 8721506 -135064949 - HUERS-P3b LTR ERV1 -5584 1834 1303 4490 146 155 27 chr12 8721514 8722874 -135063581 - pTR5 LTR ERV1 0 2438 741 2729 158 87 31 chr12 8722873 8723240 -135063215 - HUERS-P3b LTR ERV1 -7597 1322 912 * 2058 129 7 0 chr12 8723240 8723526 -135062929 - AluSg SINE Alu -22 288 1 2729 158 87 31 chr12 8723526 8723707 -135062748 - HUERS-P3b LTR ERV1 -8007 912 743 677 168 85 16 chr12 8723730 8723887 -135062568 - HUERS-P3b LTR ERV1 -6859 559 412 285 157 14 86 chr12 8723871 8723941 -135062514 - HUERS-P3b LTR ERV1 -8821 98 34 * 3010 168 76 25 chr12 8723965 8724572 -135061883 - LTR9B LTR ERV1 0 644 7 1570 159 159 3 chr12 8724581 8724883 -135061572 + MSTB LTR MaLR 78 426 0 271 62 0 42 chr12 8725140 8725188 -135061267 + (TAAAG)n Simple_repeat Simple_repeat 2 47 0 2121 130 0 0 chr12 8725251 8725544 -135060911 - AluSg SINE Alu -15 295 3 1751 327 74 26 chr12 8725544 8725939 -135060516 - L2 LINE L2 -293 3020 2645 6008 63 20 14 chr12 8725939 8726381 -135060074 + MER4E LTR ERV1 1 450 -316 2306 105 0 0 chr12 8726381 8726675 -135059780 - AluSx SINE Alu -18 294 1 6008 63 20 14 chr12 8726675 8726990 -135059465 + MER4E LTR ERV1 450 762 -4 1751 327 74 26 chr12 8726990 8727583 -135058872 - L2 LINE L2 -668 2645 1988 2373 76 0 28 chr12 8727877 8728194 -135058261 - AluY SINE Alu -2 309 2 2555 77 21 0 chr12 8728197 8728523 -135057932 - L1PA13 LINE L1 -4 6159 5827 631 211 0 8 chr12 8728523 8728644 -135057811 + L1MA4 LINE L1 6169 6300 0 265 359 98 38 chr12 8728898 8729185 -135057270 - L2 LINE L2 -4 3268 2965 7805 171 37 9 chr12 8729187 8731251 -135055204 + L1PB4 LINE L1 3710 5842 -314 2405 88 16 0 chr12 8731251 8731556 -135054899 + AluSx SINE Alu 1 310 -2 7805 171 37 9 chr12 8731556 8731772 -135054683 + L1PB4 LINE L1 5842 6051 -105 271 125 21 0 chr12 8731788 8731836 -135054619 + L1PA16 LINE L1 6101 6149 -17 250 352 117 20 chr12 8731836 8732032 -135054423 - L2 LINE L2 -186 3086 2872 1204 251 78 6 chr12 8732135 8732494 -135053961 + L1MC4a LINE L1 5538 5922 -1886 2456 81 3 0 chr12 8732991 8733298 -135053157 - AluSc SINE Alu -1 308 1 632 153 178 31 chr12 8733471 8733634 -135052821 + MER53 DNA DNA 1 187 -2 618 95 0 0 chr12 8733740 8733835 -135052620 + (CGG)n Simple_repeat Simple_repeat 3 97 0 391 289 0 0 chr12 8734128 8734218 -135052237 - MIR SINE MIR -126 136 47 1155 108 0 0 chr12 8734219 8734385 -135052070 + AluSg/x SINE Alu 137 302 -10 294 120 100 0 chr12 8734385 8734435 -135052020 + Alu SINE Alu 236 290 -12 321 304 104 52 chr12 8735062 8735312 -135051143 + L1MEd LINE L1 961 1223 -4896 1155 218 97 7 chr12 8735397 8735877 -135050578 + L1ME LINE L1 5040 5557 -609 2168 97 3 17 chr12 8736689 8736987 -135049468 + AluSx SINE Alu 13 306 -6 3107 90 42 2 chr12 8737041 8737589 -135048866 + PABL_A LTR ERV1 1 655 -5 1144 283 70 15 chr12 8738161 8738631 -135047824 - L1ME3A LINE L1 -1 6169 5674 700 140 0 0 chr12 8738634 8738734 -135047721 - LTR12 LTR ERV1 0 714 615 312 253 10 10 chr12 8738737 8738836 -135047619 - LTR30 LTR ERV1 -80 642 544 1238 109 153 52 chr12 8738841 8739089 -135047366 - LTR12 LTR ERV1 -441 273 1 933 239 60 28 chr12 8739096 8739475 -135046980 - L1ME3A LINE L1 -612 5552 5156 2026 126 49 0 chr12 8739475 8739760 -135046695 + AluSq SINE Alu 1 299 -14 933 239 60 28 chr12 8739760 8739906 -135046549 - L1ME3A LINE L1 -1008 5156 5016 3423 208 80 6 chr12 8739913 8740819 -135045636 - L1ME1 LINE L1 -3 6163 5195 249 159 0 0 chr12 8741803 8741847 -135044608 + L1PA10 LINE L1 6121 6164 -4 39 22 0 0 chr12 8742226 8742272 -135044183 + AT_rich Low_complexity Low_complexity 1 46 0 2363 95 0 3 chr12 8743680 8743985 -135042470 - AluSg SINE Alu -6 304 1 270 295 91 39 chr12 8744071 8744299 -135042156 - L1ME LINE L1 -403 5759 5519 324 228 38 156 chr12 8744512 8744801 -135041654 + MER112 DNA MER1_type 1 255 -5 38 61 0 0 chr12 8744822 8744888 -135041567 + AT_rich Low_complexity Low_complexity 1 66 0 1535 128 173 0 chr12 8745843 8746092 -135040363 + AluSg SINE Alu 3 294 -16 802 256 106 8 chr12 8746148 8746393 -135040062 - MER82 DNA MER2_type 0 653 385 453 58 4 29 chr12 8746393 8746476 -135039979 - MLT2A1 LTR ERVL 0 453 368 1271 92 52 0 chr12 8746592 8746766 -135039689 - MLT2A1 LTR ERVL -40 404 222 1130 201 14 5 chr12 8746767 8746976 -135039479 - MER82 DNA MER2_type -264 389 179 1658 185 71 3 chr12 8746996 8747348 -135039107 - L1MA9 LINE L1 -1 6311 5936 893 110 43 0 chr12 8747352 8747516 -135038939 + CT-rich Low_complexity Low_complexity 1 171 0 746 134 8 0 chr12 8747516 8747643 -135038812 + (TCCC)n Simple_repeat Simple_repeat 4 131 0 1394 109 0 5 chr12 8747645 8747837 -135038618 - AluSg/x SINE Alu -40 272 82 17628 214 26 17 chr12 8747905 8748893 -135037562 - L1P4 LINE L1 -466 6350 5373 186 71 0 0 chr12 8748893 8748921 -135037534 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 17628 214 26 17 chr12 8748921 8749884 -135036571 - L1P4 LINE L1 -1443 5373 4420 546 70 0 93 chr12 8749884 8749917 -135036538 + MADE1 DNA Mariner 1 35 -45 1954 149 14 0 chr12 8749917 8749930 -135036525 - AluSx SINE Alu -13 299 288 708 64 0 0 chr12 8749930 8750024 -135036431 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 1954 149 14 0 chr12 8750024 8750305 -135036150 - AluSx SINE Alu -24 288 1 546 70 0 93 chr12 8750305 8750357 -135036098 + MADE1 DNA Mariner 35 78 -2 17628 214 26 17 chr12 8750357 8751136 -135035319 - L1P4 LINE L1 -2396 4420 3650 2378 93 0 10 chr12 8751136 8751437 -135035018 - AluSc SINE Alu -11 298 1 17628 214 26 17 chr12 8751437 8754224 -135032231 - L1P4 LINE L1 -3166 3650 775 2384 158 80 22 chr12 8754220 8754358 -135032097 - L1P4 LINE L1 -380 5786 5658 * 1762 85 0 5 chr12 8754358 8754582 -135031873 - AluY SINE Alu -9 302 80 2384 158 80 22 chr12 8754582 8754905 -135031550 - L1P4 LINE L1 -508 5658 5298 835 138 0 0 chr12 8755691 8755814 -135030641 - AluSp/q SINE Alu -12 301 179 1530 132 0 9 chr12 8755814 8756033 -135030422 - AluSx SINE Alu -93 219 3 398 130 0 26 chr12 8756438 8756515 -135029940 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1377 331 8 15 chr12 8756657 8757249 -135029206 - MER21A-int LTR ERV1 -128 6521 5934 711 291 49 61 chr12 8758257 8758877 -135027578 - MER21A-int LTR ERV1 -729 7056 3365 349 314 8 8 chr12 8759280 8759404 -135027051 - MER21A-int LTR ERV1 -3744 3152 3029 2086 153 0 0 chr12 8759583 8759884 -135026571 - AluSx SINE Alu -11 301 1 206 265 0 0 chr12 8759888 8759937 -135026518 + T-rich Low_complexity Low_complexity 1 49 0 2396 342 29 31 chr12 8759946 8762014 -135024441 - MER21A-int LTR ERV1 -2029 5756 2864 362 341 0 0 chr12 8762027 8762162 -135024293 - MER21A-int LTR ERV1 -4160 3625 3491 32178 113 12 53 chr12 8762186 8768596 -135017859 - L1PA7 LINE L1 0 6154 12 1715 323 41 36 chr12 8768917 8770922 -135015533 - MER21A-int LTR ERV1 -4395 3390 954 207 0 0 0 chr12 8771292 8771315 -135015140 + (TCTCCC)n Simple_repeat Simple_repeat 1 23 0 8285 20 1 320 chr12 8771320 8773351 -135013104 + SVA Other Other 2 1383 -3 280 310 82 6 chr12 8773648 8773819 -135012636 - MER21A-int LTR ERV1 -6279 370 187 12026 247 21 21 chr12 8774435 8777944 -135008511 - L1P LINE L1 -950 5196 1686 2224 122 10 124 chr12 8777957 8778464 -135007991 - LTR10A LTR ERV1 -160 449 1 359 299 0 0 chr12 8778646 8778743 -135007712 - L1PA12 LINE L1 -5399 1446 1350 550 354 23 34 chr12 8778991 8779476 -135006979 - L1M2 LINE L1 -6317 521 3 2798 199 41 26 chr12 8779478 8780551 -135005904 - MER21A-int LTR ERV1 -2565 4193 163 280 167 42 0 chr12 8780571 8780619 -135005836 - MER21A-int LTR ERV1 -4141 50 1 2225 198 22 86 chr12 8780653 8781534 -135004921 - MER21A LTR ERV1 -17 914 1 349 323 19 19 chr12 8781538 8781720 -135004735 - L1M3de LINE L1 -5038 1615 1434 2452 78 0 0 chr12 8781871 8782167 -135004288 - AluY SINE Alu -14 297 2 3543 84 63 6 chr12 8782196 8782686 -135003769 - MER11A LTR ERVK -748 518 1 2105 215 0 35 chr12 8782687 8783176 -135003279 + L1 LINE L1 2398 2869 -3277 2335 114 47 33 chr12 8783199 8783558 -135002897 + THE1B LTR MaLR 1 364 0 2286 152 3 8 chr12 8783558 8783921 -135002534 + L1PB3 LINE L1 5794 6154 0 418 276 10 0 chr12 8783971 8784069 -135002386 + ERVL LTR ERVL 2186 2284 -3480 298 161 0 0 chr12 8784216 8784272 -135002183 - L1MB8 LINE L1 0 6178 6123 * 850 177 25 0 chr12 8784271 8784429 -135002026 + L1 LINE L1 3652 3813 -2333 720 215 71 11 chr12 8784763 8785139 -135001316 - L1MB8 LINE L1 -42 6136 5677 * 1320 291 63 30 chr12 8785138 8786009 -135000446 - L1M4c LINE L1 -3451 2931 2021 880 224 14 14 chr12 8786022 8786236 -135000219 - L1MB8 LINE L1 -1366 4780 4567 * 2236 203 35 18 chr12 8786234 8786960 -134999495 - L1MCb LINE L1 -4851 1194 600 1416 239 82 72 chr12 8786947 8787541 -134998914 - L1MCb LINE L1 -5821 743 144 * 2146 113 0 26 chr12 8787766 8788077 -134998378 - AluSc SINE Alu -6 303 1 561 272 75 8 chr12 8788306 8788545 -134997910 - Tigger8 DNA MER2_type -200 466 212 369 0 0 0 chr12 8789763 8789804 -134996651 + (CA)n Simple_repeat Simple_repeat 2 42 0 3611 113 19 2 chr12 8789989 8790510 -134995945 - L1MA1 LINE L1 0 6302 5773 408 293 108 81 chr12 8791096 8791847 -134994608 - HAL1 LINE L1 -681 1826 1056 4754 196 33 37 chr12 8792955 8794442 -134992013 - L1MA9 LINE L1 -36 6276 4793 2293 98 3 13 chr12 8794442 8794757 -134991698 - AluSx SINE Alu 0 312 1 4754 196 33 37 chr12 8794757 8794952 -134991503 - L1MA9 LINE L1 -1519 4793 4599 2767 114 5 18 chr12 8796637 8797030 -134989425 - L1PA8A LINE L1 -13 6118 5731 11471 41 6 0 chr12 8797117 8799202 -134987253 - L1PA5 LINE L1 0 6154 4064 434 167 0 0 chr12 8799321 8799393 -134987062 + Alu SINE Alu 239 310 -2 23 54 0 0 chr12 8799436 8799473 -134986982 + AT_rich Low_complexity Low_complexity 1 37 0 2060 120 13 25 chr12 8799489 8799805 -134986650 - AluSp SINE Alu -1 312 1 1680 117 0 21 chr12 8799842 8799981 -134986474 - AluSq SINE Alu -41 272 139 2145 128 0 3 chr12 8799981 8800287 -134986168 - AluSx SINE Alu -7 305 1 1680 117 0 21 chr12 8800287 8800386 -134986069 - AluSq SINE Alu -174 139 39 1157 162 16 0 chr12 8800401 8800592 -134985863 - L1M2 LINE L1 -623 5689 5496 956 210 122 5 chr12 8800594 8800808 -134985647 - MLT1A1 LTR MaLR -79 286 48 1992 115 7 0 chr12 8800811 8801099 -134985356 - AluSx SINE Alu -22 290 1 620 129 95 17 chr12 8801101 8801217 -134985238 + L1MC2 LINE L1 5703 5827 -517 2253 104 0 0 chr12 8801218 8801516 -134984939 + AluSp SINE Alu 1 298 -15 1055 92 0 0 chr12 8802093 8802223 -134984232 + AluSq/x SINE Alu 1 130 -183 1739 124 4 4 chr12 8802230 8802480 -134983975 + AluSp SINE Alu 49 298 -15 21 0 0 0 chr12 8802529 8802550 -134983905 + AT_rich Low_complexity Low_complexity 1 21 0 2130 125 0 7 chr12 8802552 8802856 -134983599 - AluSx SINE Alu -10 302 1 1101 333 42 15 chr12 8802874 8803432 -134983023 - L2 LINE L2 -4 3309 2739 1040 168 11 173 chr12 8803499 8803637 -134982818 + AluSc SINE Alu 1 47 -262 2410 75 3 0 chr12 8803637 8803931 -134982524 + AluSp SINE Alu 3 297 -16 1040 168 11 173 chr12 8803931 8804150 -134982305 + AluSc SINE Alu 47 300 -9 2229 131 0 0 chr12 8804319 8804632 -134981823 - AluSq SINE Alu 0 313 1 757 167 15 23 chr12 8804846 8804978 -134981477 + FLAM_C SINE Alu 7 137 -6 2035 100 6 85 chr12 8805002 8805332 -134981123 - AluSq SINE Alu -9 304 1 829 187 0 8 chr12 8805496 8805630 -134980825 + FLAM_A SINE Alu 1 133 0 2005 138 20 7 chr12 8805878 8806175 -134980280 + AluSx SINE Alu 5 305 -7 2258 80 10 3 chr12 8806175 8806464 -134979991 + AluY SINE Alu 1 291 -20 447 252 9 9 chr12 8806655 8806766 -134979689 + MER70B LTR ERVL 457 567 -11 2248 111 0 0 chr12 8806833 8807130 -134979325 + AluSx SINE Alu 3 299 -13 23 78 0 0 chr12 8807145 8807196 -134979259 + AT_rich Low_complexity Low_complexity 1 51 0 2426 43 3 0 chr12 8807233 8807538 -134978917 + AluY SINE Alu 1 306 0 2408 68 3 0 chr12 8807842 8808134 -134978321 + AluSp SINE Alu 3 295 -18 328 294 14 28 chr12 8808569 8808712 -134977743 + CT-rich Low_complexity Low_complexity 4 144 0 1552 98 0 5 chr12 8808926 8809130 -134977325 + AluSc SINE Alu 1 203 -106 2241 102 3 3 chr12 8809130 8809425 -134977030 + AluSx SINE Alu 3 297 -15 1163 148 0 0 chr12 8809428 8809604 -134976851 + AluSg/x SINE Alu 135 310 0 388 211 138 0 chr12 8809710 8809819 -134976636 - MLT2C1 LTR ERVL -200 197 74 * 448 106 18 41 chr12 8809801 8809914 -134976541 + AluSp SINE Alu 119 293 -17 2267 80 0 46 chr12 8809920 8810245 -134976210 + AluY SINE Alu 1 310 -1 391 125 31 0 chr12 8810260 8810324 -134976131 - MLT2C1 LTR ERVL -331 66 1 1013 222 36 14 chr12 8810325 8810600 -134975855 + L1M4 LINE L1 3656 3936 -2210 245 114 136 0 chr12 8810579 8810623 -134975832 + L1MB7 LINE L1 5582 5631 -553 * 556 159 37 0 chr12 8810630 8810737 -134975718 + L1MB7 LINE L1 5768 5878 -306 737 146 0 17 chr12 8810739 8811003 -134975452 + AluJ SINE Alu 1 309 -3 815 212 18 0 chr12 8811012 8811177 -134975278 + L1MB7 LINE L1 5871 6038 -146 556 159 11 11 chr12 8811246 8811334 -134975121 - AluS SINE Alu -224 89 2 383 254 42 117 chr12 8811358 8811598 -134974857 + L2 LINE L2 1698 1919 -1395 2222 127 0 0 chr12 8811612 8811920 -134974535 + AluSx SINE Alu 2 309 -3 542 147 20 10 chr12 8811924 8812180 -134974275 + AluSx SINE Alu 1 305 -4 1734 158 0 7 chr12 8812242 8812563 -134973892 - AluSx SINE Alu 0 319 1 986 262 99 66 chr12 8812564 8813159 -134973296 + L2 LINE L2 1938 2555 -759 2592 62 0 0 chr12 8813159 8813463 -134972992 - AluY SINE Alu -7 304 1 986 262 99 66 chr12 8813463 8813485 -134972970 + L2 LINE L2 2555 2575 -739 511 124 0 56 chr12 8813661 8813750 -134972705 - AluS SINE Alu -4 305 222 491 185 25 25 chr12 8914318 8914437 -134872018 + FLAM_C SINE Alu 1 119 -14 576 284 147 10 chr12 8915421 8915618 -134870837 + MIR SINE MIR 34 257 -5 315 318 126 33 chr12 8915676 8915832 -134870623 - MIR3 SINE MIR -11 197 25 2438 70 6 21 chr12 8916394 8916722 -134869733 + L1PA7 LINE L1 5831 6153 -1 33 0 0 0 chr12 8916725 8916758 -134869697 + AT_rich Low_complexity Low_complexity 1 33 0 819 268 105 60 chr12 8916769 8917217 -134869238 - L1M4 LINE L1 -1911 4235 3768 258 32 0 0 chr12 8917237 8917268 -134869187 + (CA)n Simple_repeat Simple_repeat 2 32 0 1141 192 31 28 chr12 8917287 8917542 -134868913 - AluJb SINE Alu 0 312 57 834 99 14 57 chr12 8917802 8917943 -134868512 - Tigger5 DNA MER2_type -104 2219 2085 * 1171 224 9 22 chr12 8917939 8918171 -134868284 - Tigger5 DNA MER2_type -2091 232 4 297 276 69 14 chr12 8918173 8918318 -134868137 + L1M4 LINE L1 4485 4637 -1509 512 264 64 18 chr12 8918326 8918703 -134867752 + MLT1C LTR MaLR 6 461 -6 395 360 132 19 chr12 8918723 8919101 -134867354 + L1M4 LINE L1 4707 5127 -1019 1845 151 0 3 chr12 8919242 8919534 -134866921 - AluSx SINE Alu -21 291 1 822 189 0 78 chr12 8919669 8919697 -134866758 - AluJo SINE Alu -22 290 261 2604 131 43 11 chr12 8919697 8920141 -134866314 + LTR22A LTR ERVK 1 458 0 822 189 0 78 chr12 8920141 8920303 -134866152 - AluJo SINE Alu -51 261 115 1848 130 0 3 chr12 8920303 8920613 -134865842 + AluJb SINE Alu 1 309 0 846 141 7 0 chr12 8920622 8920757 -134865698 + AluJb SINE Alu 1 136 -176 30 0 0 0 chr12 8920757 8920787 -134865668 + AT_rich Low_complexity Low_complexity 1 30 0 686 221 0 0 chr12 8920787 8920914 -134865541 - AluJo SINE Alu -185 127 1 360 0 0 0 chr12 8920947 8920987 -134865468 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 746 170 7 0 chr12 8920989 8921136 -134865319 + C-rich Low_complexity Low_complexity 5 152 0 39 22 0 0 chr12 8921718 8921764 -134864691 + AT_rich Low_complexity Low_complexity 1 46 0 1883 157 0 0 chr12 8922173 8922472 -134863983 - AluSx SINE Alu -13 299 1 728 139 0 0 chr12 8922660 8922775 -134863680 - AluSp/q SINE Alu 0 313 199 1676 168 10 7 chr12 8922952 8923243 -134863212 + AluJb SINE Alu 1 292 -20 822 252 82 50 chr12 8924007 8924348 -134862107 + MLT2C1 LTR ERVL 44 395 -2 225 263 50 25 chr12 8924762 8924842 -134861613 - L1ME4a LINE L1 -104 6017 5936 216 0 0 0 chr12 8924883 8924907 -134861548 + (CA)n Simple_repeat Simple_repeat 2 25 0 962 175 24 0 chr12 8924951 8925117 -134861338 - AluJb SINE Alu -7 305 136 2095 144 0 0 chr12 8925119 8925425 -134861030 - AluSx SINE Alu -6 306 1 251 241 0 17 chr12 8925590 8925648 -134860807 + MER74B LTR ERVL 292 348 -274 693 281 61 40 chr12 8925663 8925876 -134860579 - MER74A LTR ERVL -306 252 32 2235 104 7 0 chr12 8925876 8926173 -134860282 - AluSq SINE Alu -14 299 1 693 281 61 40 chr12 8926173 8926187 -134860268 - MER74A LTR ERVL -526 32 20 1980 147 10 0 chr12 8926266 8926565 -134859890 - AluSx SINE Alu -10 302 1 858 165 0 0 chr12 8926587 8926720 -134859735 + AluJo SINE Alu 1 133 -169 938 141 60 0 chr12 8928213 8928362 -134858093 - FAM SINE Alu -18 167 10 349 82 279 0 chr12 8928379 8928440 -134858015 - MADE1 DNA Mariner 0 80 3 596 200 0 0 chr12 8928468 8928573 -134857882 + AluJo SINE Alu 131 235 -77 819 251 45 10 chr12 8928985 8929184 -134857271 - L1MCa LINE L1 -5684 742 537 801 153 62 157 chr12 8929231 8929505 -134856950 - AluJb SINE Alu -16 296 49 1713 205 113 98 chr12 8929564 8930328 -134856127 - LTR1B LTR ERV1 -39 981 3 348 194 119 0 chr12 8930328 8930382 -134856073 - AluS SINE Alu -246 62 1 1168 103 132 10 chr12 8930420 8930624 -134855831 - L1M3 LINE L1 -626 5557 5329 1596 167 14 22 chr12 8930729 8931004 -134855451 - AluJo SINE Alu -39 273 1 2169 125 0 13 chr12 8931351 8931656 -134854799 - AluSx SINE Alu -11 301 1 2338 98 0 3 chr12 8931709 8932014 -134854441 - AluSq SINE Alu -9 304 1 285 258 50 31 chr12 8932142 8932301 -134854154 - L1MEc LINE L1 -4674 1722 1561 349 205 26 0 chr12 8933130 8933208 -134853247 + MIR SINE MIR 183 262 0 663 263 34 0 chr12 8933428 8933603 -134852852 - MIR SINE MIR -10 252 72 2555 61 0 6 chr12 8934457 8934768 -134851687 + AluY SINE Alu 1 309 -2 572 290 80 9 chr12 8935386 8935610 -134850845 + LTR33 LTR ERVL 273 512 -9 2504 91 0 0 chr12 8936062 8936369 -134850086 + AluSx SINE Alu 1 307 -5 22 35 0 0 chr12 8936444 8936473 -134849982 + AT_rich Low_complexity Low_complexity 1 29 0 210 191 0 0 chr12 8936601 8936643 -134849812 + A-rich Low_complexity Low_complexity 5 46 0 3078 147 19 33 chr12 8936820 8937359 -134849096 - LTR26B LTR ERV1 0 531 1 2196 119 0 0 chr12 8937402 8937696 -134848759 + AluSx SINE Alu 1 294 -18 2553 66 0 0 chr12 8937803 8938105 -134848350 + AluSq SINE Alu 1 302 -11 872 137 0 0 chr12 8938370 8938494 -134847961 + FLAM_C SINE Alu 3 126 -7 2157 117 0 0 chr12 8938513 8938815 -134847640 + AluSx SINE Alu 2 303 0 2471 132 28 8 chr12 8938844 8939237 -134847218 + MSTA LTR MaLR 1 401 -27 1942 160 0 25 chr12 8939247 8939565 -134846890 - AluJo SINE Alu -1 311 2 1696 188 0 25 chr12 8940019 8940088 -134846367 + AluJo SINE Alu 1 70 -242 7780 68 13 11 chr12 8940088 8941093 -134845362 + LTR13 LTR ERVK 1 1007 0 1696 188 0 25 chr12 8941093 8941337 -134845118 + AluJo SINE Alu 70 306 -6 1650 186 6 19 chr12 8941386 8941698 -134844757 + AluJo SINE Alu 5 312 0 303 128 141 26 chr12 8941991 8942069 -134844386 + MER88 LTR ERVL 79 165 -299 * 700 233 92 33 chr12 8941999 8942239 -134844216 - MER74B LTR ERVL -72 550 297 21 0 0 0 chr12 8942392 8942413 -134844042 + AT_rich Low_complexity Low_complexity 1 21 0 220 347 11 23 chr12 8942433 8942609 -134843846 + GA-rich Low_complexity Low_complexity 2 175 0 1969 152 0 3 chr12 8942868 8943157 -134843298 + AluSx SINE Alu 1 288 -24 194 333 0 0 chr12 8943232 8943283 -134843172 - L2 LINE L2 -688 2626 2576 1494 213 3 45 chr12 8943283 8943457 -134842998 - MER90 LTR ERV1 0 614 461 2853 209 24 59 chr12 8943457 8943487 -134842968 + LTR62 LTR ERVK 2 32 -687 1906 128 42 3 chr12 8943487 8943776 -134842679 + AluSx SINE Alu 1 300 -12 2853 209 24 59 chr12 8943776 8944487 -134841968 + LTR62 LTR ERVK 32 717 -2 1494 213 3 45 chr12 8944487 8944665 -134841790 - MER90 LTR ERV1 -153 461 277 658 227 39 99 chr12 8944804 8945086 -134841369 - MER90 LTR ERV1 -310 265 1 193 329 14 0 chr12 8945172 8945242 -134841213 - L2 LINE L2 -843 2471 2401 31 0 0 0 chr12 8945279 8945310 -134841145 + AT_rich Low_complexity Low_complexity 1 31 0 1825 142 4 4 chr12 8945310 8945584 -134840871 - AluJo SINE Alu -26 286 13 188 198 37 86 chr12 8945600 8945681 -134840774 - MIR SINE MIR -105 157 81 2053 152 3 0 chr12 8945729 8946026 -134840429 + AluSx SINE Alu 1 298 -14 4220 159 28 23 chr12 8946056 8946854 -134839601 - L1MB7 LINE L1 -111 6073 5272 1741 181 3 7 chr12 8946868 8947177 -134839278 - AluJb SINE Alu -4 308 1 228 135 0 0 chr12 8947177 8947214 -134839241 - L1MB7 LINE L1 -863 5283 5247 2082 183 56 49 chr12 8947229 8947677 -134838778 - MER21A LTR ERV1 -19 912 462 1255 167 27 69 chr12 8947766 8947898 -134838557 - MER21A LTR ERV1 -185 468 332 2268 113 0 0 chr12 8947898 8948199 -134838256 + AluSx SINE Alu 1 301 -11 1255 167 27 69 chr12 8948199 8948387 -134838068 - MER21A LTR ERV1 -321 332 187 327 196 0 0 chr12 8948384 8948435 -134838020 - AluSc SINE Alu -117 182 132 * 609 200 17 8 chr12 8948436 8948556 -134837899 - FLAM_A SINE Alu -11 122 2 1191 150 39 6 chr12 8948556 8948874 -134837581 - MER39B LTR ERV1 -384 269 1 1910 229 9 9 chr12 8948875 8949325 -134837130 - L1MB7 LINE L1 -894 5252 4803 21 0 0 0 chr12 8949633 8949654 -134836801 + AT_rich Low_complexity Low_complexity 1 21 0 192 71 0 0 chr12 8949955 8949975 -134836480 + (TC)n Simple_repeat Simple_repeat 1 23 -5 2430 86 0 0 chr12 8949975 8950276 -134836179 - AluSq SINE Alu -12 301 1 192 71 0 0 chr12 8950276 8950283 -134836172 + (TC)n Simple_repeat Simple_repeat 22 28 0 803 176 0 0 chr12 8950283 8950414 -134836041 - FLAM_A SINE Alu -1 141 11 258 105 0 0 chr12 8951642 8951680 -134834775 + (A)n Simple_repeat Simple_repeat 1 38 0 185 188 138 50 chr12 8952749 8952829 -134833626 - MIR SINE MIR -146 116 30 601 338 84 20 chr12 8954512 8955009 -134831446 + L2 LINE L2 2265 2793 -521 1268 128 8 91 chr12 8955047 8955289 -134831166 - AluSg/x SINE Alu -6 304 83 1422 54 0 0 chr12 8955411 8955579 -134830876 + SVA Other Other 1219 1386 0 198 91 0 0 chr12 8955624 8955657 -134830798 + (A)n Simple_repeat Simple_repeat 1 33 0 1801 168 31 0 chr12 8955717 8956008 -134830447 - AluJb SINE Alu -12 300 1 2102 139 0 25 chr12 8956353 8956669 -134829786 - AluJb SINE Alu -4 308 1 1351 149 0 19 chr12 8956787 8957001 -134829454 - MER2 DNA MER2_type -135 210 1 1961 150 17 3 chr12 8957315 8957609 -134828846 - AluJo SINE Alu -13 299 2 410 267 87 7 chr12 8959054 8959204 -134827251 - MIR SINE MIR -1 261 100 788 161 0 0 chr12 8959234 8959358 -134827097 + FLAM_C SINE Alu 1 124 -9 7476 42 11 1 chr12 8959493 8960826 -134825629 + L1PA8 LINE L1 4830 6172 0 202 184 0 0 chr12 8961136 8961174 -134825281 + MIR3 SINE MIR 150 187 -21 2511 50 0 3 chr12 8961705 8962008 -134824447 - AluY SINE Alu -9 302 1 1136 184 23 97 chr12 8962436 8962650 -134823805 + L1MB5 LINE L1 5882 6050 -124 2547 48 0 13 chr12 8962650 8962965 -134823490 + AluY SINE Alu 1 311 0 1136 184 23 97 chr12 8962965 8963082 -134823373 + L1MB5 LINE L1 6050 6174 0 6378 115 33 12 chr12 8964454 8965403 -134821052 + LTR5 LTR ERVK 1 969 0 2255 84 28 0 chr12 8967528 8967815 -134818640 + AluSg SINE Alu 1 295 -15 342 258 136 0 chr12 8967931 8968063 -134818392 - MIR SINE MIR -7 255 106 1499 145 48 54 chr12 8968080 8968580 -134817875 + LTR47A LTR ERVL 2 450 -2 280 221 29 15 chr12 8968582 8968650 -134817805 - MIR SINE MIR -191 71 3 540 229 0 36 chr12 8968887 8969027 -134817428 - FLAM_A SINE Alu -2 140 6 1905 139 34 10 chr12 8969302 8969597 -134816858 + AluSx SINE Alu 9 310 -2 188 224 140 84 chr12 8969812 8969919 -134816536 + MIR SINE MIR 53 165 -97 189 0 0 0 chr12 8969979 8970000 -134816455 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1200 192 73 73 chr12 8970132 8970429 -134816026 - MSTD LTR MaLR 0 396 100 2211 126 0 16 chr12 8970429 8970746 -134815709 - AluSx SINE Alu 0 312 1 2030 118 4 4 chr12 8970753 8971032 -134815423 - AluSq SINE Alu -12 301 23 1200 192 73 73 chr12 8971032 8971122 -134815333 - MSTD LTR MaLR -301 95 1 24 60 0 30 chr12 8971166 8971202 -134815253 + AT_rich Low_complexity Low_complexity 1 36 -29 1426 178 85 0 chr12 8971202 8971461 -134814994 - AluJo SINE Alu -31 281 1 24 60 0 30 chr12 8971461 8971491 -134814964 + AT_rich Low_complexity Low_complexity 36 65 0 717 209 0 8 chr12 8971492 8971626 -134814829 + FLAM_C SINE Alu 1 133 0 2388 27 44 14 chr12 8972111 8972408 -134814047 - AluY SINE Alu -5 306 1 1147 124 0 0 chr12 8972518 8972671 -134813784 - AluSq SINE Alu -160 153 1 276 30 0 0 chr12 8973439 8973472 -134812983 + (GAAA)n Simple_repeat Simple_repeat 4 36 0 2319 94 0 7 chr12 8974503 8974802 -134811653 - AluSq SINE Alu -16 297 1 23 0 0 0 chr12 8975554 8975577 -134810878 + AT_rich Low_complexity Low_complexity 1 23 0 2223 111 0 0 chr12 8975577 8975865 -134810590 - AluSq SINE Alu -24 289 2 330 322 34 42 chr12 8975877 8975995 -134810460 - MIR3 SINE MIR -52 156 40 409 247 35 46 chr12 8977253 8977427 -134809028 + MIR SINE MIR 48 219 -43 2415 96 6 0 chr12 8978720 8979053 -134807402 - L1PB2 LINE L1 -3 6148 5814 2203 102 0 0 chr12 8979816 8980143 -134806312 + AluSx SINE Alu 1 327 0 187 270 0 0 chr12 8980204 8980241 -134806214 + MER5B DNA MER1_type 1 37 -141 2166 127 0 0 chr12 8981094 8981412 -134805043 + AluSx SINE Alu 1 318 0 450 294 83 34 chr12 8981574 8981839 -134804616 + L2 LINE L2 2184 2461 -853 2419 96 0 6 chr12 8981839 8982152 -134804303 + AluSq SINE Alu 1 311 -2 180 341 49 0 chr12 8982206 8982288 -134804167 + L2 LINE L2 2564 2649 -665 282 338 19 57 chr12 8982452 8982609 -134803846 + L2 LINE L2 2942 3092 -180 2067 116 0 3 chr12 8982793 8983078 -134803377 + AluSq SINE Alu 20 303 -10 32 26 0 0 chr12 8983550 8983589 -134802866 + AT_rich Low_complexity Low_complexity 1 39 0 2083 127 17 0 chr12 8983599 8983890 -134802565 + AluSx SINE Alu 5 300 -12 1815 146 53 26 chr12 8983945 8984247 -134802208 + AluSg SINE Alu 1 310 0 180 0 0 0 chr12 8984685 8984705 -134801750 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2484 34 41 0 chr12 8984988 8985279 -134801176 - AluY SINE Alu -8 303 1 1126 113 38 0 chr12 8985348 8985507 -134800948 - AluSg/x SINE Alu -15 295 131 426 85 0 0 chr12 8985507 8985523 -134800932 + (CA)n Simple_repeat Simple_repeat 1 75 0 426 85 0 0 chr12 8985523 8985582 -134800873 + (CA)n Simple_repeat Simple_repeat 2 60 0 2277 84 3 17 chr12 8985600 8985899 -134800556 - AluSq SINE Alu -18 295 1 679 209 11 37 chr12 8985909 8986096 -134800359 + L1MA9 LINE L1 6109 6290 -22 1154 82 7 0 chr12 8986191 8986337 -134800118 + AluSp SINE Alu 123 269 -44 1994 135 14 3 chr12 8986517 8986806 -134799649 + AluSx SINE Alu 1 292 -20 1604 170 13 35 chr12 8987277 8987477 -134798978 - AluJo SINE Alu -7 305 113 2087 133 7 3 chr12 8987477 8987779 -134798676 + AluSq SINE Alu 1 303 -10 1604 170 13 35 chr12 8987779 8987889 -134798566 - AluJo SINE Alu -199 113 2 578 258 28 65 chr12 8988153 8988370 -134798085 + MER112 DNA MER1_type 23 231 -29 1804 153 14 7 chr12 8988628 8988922 -134797533 - AluJo SINE Alu -1 311 16 541 146 115 92 chr12 8989996 8990126 -134796329 - FLAM_C SINE Alu 0 133 1 920 140 0 0 chr12 8991618 8991754 -134794701 - AluSp/q SINE Alu -1 312 177 1342 142 14 14 chr12 8992265 8992476 -134793979 - AluJo SINE Alu -15 297 87 273 57 0 0 chr12 8992775 8992810 -134793645 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 2098 129 30 0 chr12 8993517 8993819 -134792636 - AluSx SINE Alu -1 311 1 215 343 0 0 chr12 8994627 8994694 -134791761 + L2 LINE L2 2992 3058 -214 930 144 0 0 chr12 8994826 8994958 -134791497 - FLAM_C SINE Alu -11 132 1 339 102 0 0 chr12 8995042 8995112 -134791343 + FLAM_A SINE Alu 85 154 0 2297 97 3 0 chr12 8995115 8995405 -134791050 - AluY SINE Alu -20 291 1 2310 115 0 3 chr12 8995405 8995709 -134790746 - AluSx SINE Alu -9 303 1 1054 157 0 0 chr12 8995728 8995881 -134790574 + FRAM SINE Alu 5 157 -19 22 56 0 0 chr12 8996575 8996611 -134789844 + AT_rich Low_complexity Low_complexity 1 36 0 1499 239 78 80 chr12 8996612 8996651 -134789804 + MLT1F1 LTR MaLR 6 44 -523 2004 127 0 3 chr12 8996651 8996956 -134789499 - AluSx SINE Alu 0 304 1 1499 239 78 80 chr12 8996956 8997451 -134789004 + MLT1F1 LTR MaLR 44 565 -2 202 157 48 36 chr12 8997475 8997534 -134788921 + (TA)n Simple_repeat Simple_repeat 1 63 -21 2503 134 53 7 chr12 8997534 8997945 -134788510 - MSTB1 LTR MaLR -2 430 1 202 157 48 36 chr12 8997945 8997968 -134788487 + (TA)n Simple_repeat Simple_repeat 63 84 0 258 317 10 10 chr12 8998158 8998259 -134788196 + GA-rich Low_complexity Low_complexity 3 103 0 2766 42 0 0 chr12 8998261 8998570 -134787885 + AluY SINE Alu 1 309 -2 638 92 122 0 chr12 8998578 8998676 -134787779 - THE1A LTR MaLR -245 110 1 7990 111 6 3 chr12 8998676 8999754 -134786701 - THE1A-int LTR MaLR 0 1580 496 2125 129 6 3 chr12 8999754 9000065 -134786390 - AluSp SINE Alu -1 312 1 7990 111 6 3 chr12 9000065 9000077 -134786378 - THE1A-int LTR MaLR -1084 496 486 677 279 48 14 chr12 9000300 9000590 -134785865 + AluJb SINE Alu 1 300 -2 222 62 0 0 chr12 9000651 9000683 -134785772 + (T)n Simple_repeat Simple_repeat 1 32 0 6528 70 20 37 chr12 9000728 9001699 -134784756 - SVA Other Other 0 1386 433 1240 106 43 67 chr12 9001763 9002208 -134784247 - SVA Other Other -520 866 433 5667 83 11 48 chr12 9002266 9003167 -134783288 - SVA Other Other -518 868 1 21 0 0 0 chr12 9003167 9003188 -134783267 + AT_rich Low_complexity Low_complexity 1 21 0 186 234 43 0 chr12 9003334 9003381 -134783074 + L3 LINE CR1 1525 1573 -4 2127 126 7 0 chr12 9003448 9003741 -134782714 - AluSx SINE Alu -14 298 4 1022 97 0 8 chr12 9004753 9004887 -134781568 + AluSq/x SINE Alu 1 133 -180 2309 119 3 0 chr12 9004891 9005202 -134781253 + AluSx SINE Alu 1 312 0 6839 174 40 48 chr12 9005223 9006040 -134780415 + L1 LINE L1 3721 4543 -1603 1849 157 35 0 chr12 9006040 9006326 -134780129 + AluJb SINE Alu 1 296 -16 6839 174 40 48 chr12 9006326 9006614 -134779841 + L1 LINE L1 4543 4832 -1314 204 40 0 0 chr12 9006621 9006646 -134779809 + (TG)n Simple_repeat Simple_repeat 2 26 0 2102 113 18 0 chr12 9006646 9006921 -134779534 - AluSx SINE Alu -25 287 5 6839 174 40 48 chr12 9006921 9007346 -134779109 + L1 LINE L1 4832 5241 -905 1947 150 0 13 chr12 9007346 9007646 -134778809 + AluJb SINE Alu 1 296 -16 6839 174 40 48 chr12 9007646 9007708 -134778747 + L1 LINE L1 5241 5302 -844 1697 243 48 42 chr12 9007710 9008267 -134778188 - LTR24B LTR ERV1 -7 569 33 2199 115 11 0 chr12 9008267 9008554 -134777901 - AluSq SINE Alu -23 290 1 1697 243 48 42 chr12 9008554 9008588 -134777867 - LTR24B LTR ERV1 -543 33 1 930 116 14 0 chr12 9008589 9008735 -134777720 + L1MA9 LINE L1 5304 5451 -861 3078 196 57 76 chr12 9008752 9009216 -134777239 + MER21B LTR ERV1 14 456 -407 1990 145 3 10 chr12 9009216 9009513 -134776942 - AluSx SINE Alu -17 295 1 3078 196 57 76 chr12 9009513 9009895 -134776560 + MER21B LTR ERV1 456 844 -19 2416 83 0 22 chr12 9009917 9010231 -134776224 - AluSx SINE Alu -5 307 1 4460 130 19 87 chr12 9010279 9010844 -134775611 + L1MA9 LINE L1 5447 6049 -263 2413 97 0 3 chr12 9010844 9011155 -134775300 + AluSx SINE Alu 1 310 -2 4460 130 19 87 chr12 9011155 9011307 -134775148 + L1MA9 LINE L1 6049 6093 -219 1748 167 13 20 chr12 9011307 9011606 -134774849 + AluJb SINE Alu 1 297 -15 4460 130 19 87 chr12 9011606 9011784 -134774671 + L1MA9 LINE L1 6093 6282 -30 1789 153 3 7 chr12 9012060 9012347 -134774108 + AluJb SINE Alu 1 286 -26 38 39 0 0 chr12 9012347 9012399 -134774056 + AT_rich Low_complexity Low_complexity 1 52 0 1832 243 84 16 chr12 9012705 9013269 -134773186 - L2 LINE L2 -446 2868 2253 2565 96 34 6 chr12 9013269 9013623 -134772832 + THE1B LTR MaLR 1 364 0 1832 243 84 16 chr12 9013623 9013700 -134772755 - L2 LINE L2 -1061 2253 2183 278 352 9 9 chr12 9013693 9013798 -134772657 + L2 LINE L2 3168 3272 0 * 653 161 42 17 chr12 9015606 9015724 -134770731 - FLAM_C SINE Alu -18 125 5 462 18 0 0 chr12 9016448 9016503 -134769952 + (CA)n Simple_repeat Simple_repeat 1 55 0 828 230 6 0 chr12 9016821 9016995 -134769460 - FRAM SINE Alu -1 175 1 22 0 0 0 chr12 9017022 9017044 -134769411 + AT_rich Low_complexity Low_complexity 1 22 0 1962 138 23 7 chr12 9017165 9017470 -134768985 + AluJb SINE Alu 1 310 -2 1120 194 95 11 chr12 9017591 9017875 -134768580 + L1ME1 LINE L1 5661 5968 -198 705 199 7 7 chr12 9017877 9018013 -134768442 + FLAM_C SINE Alu 4 139 -4 585 224 80 50 chr12 9018013 9018214 -134768241 + L1ME1 LINE L1 5960 6166 0 24 32 0 0 chr12 9018785 9018816 -134767639 + AT_rich Low_complexity Low_complexity 1 31 0 2276 125 0 0 chr12 9018870 9019182 -134767273 - AluSq SINE Alu -1 312 1 482 135 21 21 chr12 9019262 9019358 -134767097 + AluSg1 SINE Alu 2 97 -212 3320 86 2 29 chr12 9019501 9019529 -134766926 - THE1A-int LTR MaLR -1136 444 417 2254 86 0 7 chr12 9019529 9019838 -134766617 + AluSg1 SINE Alu 1 307 0 3320 86 2 29 chr12 9019838 9020264 -134766191 - THE1A-int LTR MaLR -1163 417 1 2588 83 23 9 chr12 9020264 9020614 -134765841 - THE1A LTR MaLR 0 355 1 1207 197 68 4 chr12 9020614 9020816 -134765639 + MSTB LTR MaLR 162 384 -42 1977 117 0 4 chr12 9020816 9021080 -134765375 - AluSq SINE Alu -50 263 1 1207 197 68 4 chr12 9021080 9021126 -134765329 + MSTB LTR MaLR 384 426 0 515 272 142 54 chr12 9021260 9021496 -134764959 - MLT1H1 LTR MaLR -16 533 319 2301 107 0 3 chr12 9021496 9021795 -134764660 - AluSx SINE Alu -14 298 1 515 272 142 54 chr12 9021795 9022009 -134764446 - MLT1H1 LTR MaLR -230 319 1 2557 64 0 3 chr12 9022125 9022437 -134764018 - AluY SINE Alu 0 311 1 1999 145 0 29 chr12 9022438 9022748 -134763707 - AluSx SINE Alu -11 301 1 2319 100 10 0 chr12 9022759 9023059 -134763396 - AluSx SINE Alu -9 303 1 254 315 87 17 chr12 9023085 9023431 -134763024 + L2 LINE L2 1893 2262 -1052 1244 207 104 85 chr12 9023433 9023979 -134762476 - LTR24B LTR ERV1 -5 630 28 1533 200 3 14 chr12 9023979 9024274 -134762181 - AluJb SINE Alu -20 292 1 2369 115 0 0 chr12 9024288 9024600 -134761855 - AluSx SINE Alu 0 312 1 22 0 0 0 chr12 9024607 9024629 -134761826 + AT_rich Low_complexity Low_complexity 1 22 0 334 323 98 19 chr12 9025280 9025596 -134760859 + L2 LINE L2 2473 2813 -501 1731 174 45 0 chr12 9025650 9025820 -134760635 - AluJb SINE Alu -8 304 114 283 0 47 23 chr12 9025820 9025863 -134760592 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1731 174 45 0 chr12 9025863 9025979 -134760476 - AluJb SINE Alu -198 114 5 839 131 0 51 chr12 9026080 9026217 -134760238 - FLAM_C SINE Alu -3 130 1 2415 82 10 0 chr12 9026221 9026527 -134759928 - AluSp SINE Alu -2 311 3 2156 107 3 35 chr12 9027073 9027392 -134759063 - AluSx SINE Alu -3 309 1 4072 97 2 23 chr12 9027721 9028066 -134758389 + MER41A LTR ERV1 1 331 -223 2393 48 7 14 chr12 9028066 9028360 -134758095 - AluY SINE Alu -19 292 1 4072 97 2 23 chr12 9028360 9028580 -134757875 + MER41A LTR ERV1 331 554 0 1480 146 124 51 chr12 9028890 9029165 -134757290 - AluJb SINE Alu -16 296 2 1707 249 116 57 chr12 9029250 9030017 -134756438 + MER21B LTR ERV1 1 812 -51 2249 86 0 10 chr12 9030392 9030705 -134755750 + AluY SINE Alu 1 310 -1 838 87 17 0 chr12 9030723 9030838 -134755617 - AluSp SINE Alu -196 117 1 3116 114 7 4 chr12 9030839 9031302 -134755153 - L1MC1 LINE L1 -355 5978 5515 227 250 16 0 chr12 9031302 9031366 -134755089 + MLT1J2 LTR MaLR 73 137 -313 1125 188 59 86 chr12 9031366 9031649 -134754806 - L1MC/D LINE L1 -743 5403 5114 2181 121 0 0 chr12 9031649 9031946 -134754509 - AluSq SINE Alu -12 301 5 1125 188 59 86 chr12 9031946 9032076 -134754379 - L1MC/D LINE L1 -1032 5114 5078 2103 124 3 0 chr12 9032076 9032375 -134754080 - AluSx SINE Alu -12 300 1 1125 188 59 86 chr12 9032375 9032536 -134753919 - L1MC/D LINE L1 -1068 5078 4914 1850 152 21 7 chr12 9032536 9032825 -134753630 - AluSx SINE Alu -19 293 1 2026 202 70 98 chr12 9032846 9033513 -134752942 - L1MC/D LINE L1 -1793 4353 3705 229 175 0 0 chr12 9033512 9033552 -134752903 - L1MC/D LINE L1 -2813 3333 3294 * 1854 110 23 58 chr12 9033552 9033712 -134752743 - AluSx SINE Alu -11 301 156 2322 78 0 3 chr12 9033712 9034006 -134752449 - AluSc SINE Alu -14 295 3 1854 110 23 58 chr12 9034006 9034153 -134752302 - AluSx SINE Alu -156 156 5 240 111 0 0 chr12 9034157 9034193 -134752262 + (TCCCC)n Simple_repeat Simple_repeat 4 39 0 709 190 123 0 chr12 9034194 9034357 -134752098 - AluSg/x SINE Alu -9 303 121 2486 53 0 31 chr12 9034363 9034684 -134751771 - AluY SINE Alu 0 311 1 232 355 65 13 chr12 9034795 9034950 -134751505 - MER5A DNA MER1_type 0 189 27 188 250 23 0 chr12 9034980 9035024 -134751431 - MER5A DNA MER1_type 0 189 145 362 121 95 78 chr12 9035026 9035142 -134751313 - MER53 DNA DNA -1 188 71 200 368 0 0 chr12 9035388 9035475 -134750980 + T-rich Low_complexity Low_complexity 3 89 0 272 237 17 0 chr12 9035520 9035579 -134750876 + CT-rich Low_complexity Low_complexity 2 61 0 195 42 0 0 chr12 9035720 9035744 -134750711 + (A)n Simple_repeat Simple_repeat 1 24 0 2307 107 0 3 chr12 9036729 9037038 -134749417 - AluSx SINE Alu -4 308 1 21 71 0 0 chr12 9037353 9037395 -134749060 + AT_rich Low_complexity Low_complexity 1 42 0 640 227 47 41 chr12 9038397 9038545 -134747910 + MIR SINE MIR 1 152 -110 2260 121 0 0 chr12 9038545 9038851 -134747604 + AluSc SINE Alu 1 306 -3 640 227 47 41 chr12 9038851 9038874 -134747581 + MIR SINE MIR 152 173 -89 868 170 22 0 chr12 9039077 9039212 -134747243 - AluJo SINE Alu -61 251 114 1976 137 19 3 chr12 9039229 9039536 -134746919 + AluSx SINE Alu 1 312 0 205 296 35 17 chr12 9040082 9040197 -134746258 + MIR SINE MIR 102 218 -44 199 241 0 37 chr12 9040354 9040408 -134746047 - MER5A DNA MER1_type -95 94 43 197 245 0 20 chr12 9040366 9040415 -134746040 + MER5A DNA MER1_type 118 165 -24 * 2213 131 0 3 chr12 9041287 9041600 -134744855 - AluSx SINE Alu 0 312 1 336 244 100 11 chr12 9041796 9041886 -134744569 - MER5B DNA MER1_type -3 175 78 2190 94 40 7 chr12 9041935 9042234 -134744221 + AluSx SINE Alu 1 309 -3 683 184 0 0 chr12 9042234 9042348 -134744107 - AluJo/FLAM SINE Alu -184 118 5 2165 114 10 0 chr12 9042362 9042668 -134743787 - AluSq SINE Alu -4 309 1 480 239 168 19 chr12 9042906 9043115 -134743340 - MIR SINE MIR 0 262 23 248 49 49 0 chr12 9043153 9043194 -134743261 + (CCCCG)n Simple_repeat Simple_repeat 3 45 0 2389 81 13 0 chr12 9043669 9043967 -134742488 - AluSp SINE Alu -11 302 1 678 236 65 10 chr12 9044459 9044658 -134741797 - MIR SINE MIR -21 241 32 215 216 136 56 chr12 9045057 9045182 -134741273 - MIR SINE MIR -67 195 61 42 48 0 0 chr12 9045805 9045868 -134740587 + GC_rich Low_complexity Low_complexity 1 63 0 2095 140 7 0 chr12 9048754 9049054 -134737401 + AluSx SINE Alu 1 302 -10 2187 123 0 3 chr12 9049693 9049993 -134736462 + AluSx SINE Alu 1 299 -13 2240 126 7 0 chr12 9050975 9051285 -134735170 + AluSx SINE Alu 1 312 0 1349 184 43 35 chr12 9051309 9051564 -134734891 - AluJo SINE Alu -24 288 32 828 184 0 0 chr12 9051566 9051691 -134734764 - AluJo/FLAM SINE Alu -187 125 1 358 279 103 12 chr12 9051692 9051857 -134734598 + MIR SINE MIR 67 246 -16 2122 132 7 3 chr12 9052073 9052368 -134734087 + AluSx SINE Alu 1 296 -16 1235 189 70 12 chr12 9052683 9052942 -134733513 + AluJo SINE Alu 13 286 -26 261 0 0 0 chr12 9052942 9052971 -134733484 + (CA)n Simple_repeat Simple_repeat 2 30 0 2438 101 0 0 chr12 9053165 9053471 -134732984 + AluSx SINE Alu 1 306 -6 1854 186 51 70 chr12 9053586 9054059 -134732396 - MLT2C2 LTR ERVL 0 464 1 2244 113 0 16 chr12 9054103 9054413 -134732042 - AluSq SINE Alu -6 307 3 2121 133 0 10 chr12 9054415 9054724 -134731731 - AluSq SINE Alu -7 306 1 3556 199 127 13 chr12 9055018 9055793 -134730662 - MER21B LTR ERV1 0 863 1 1464 107 207 15 chr12 9057648 9057919 -134728536 + MER44D DNA MER2_type 17 609 0 1424 171 8 28 chr12 9057957 9058229 -134728226 - AluSx SINE Alu 0 301 35 2180 128 13 0 chr12 9058249 9058575 -134727880 - AluSx SINE Alu 0 330 1 860 160 0 14 chr12 9058815 9058959 -134727496 + FLAM_C SINE Alu 1 142 -1 1438 125 0 37 chr12 9059003 9059219 -134727236 + AluSg/x SINE Alu 91 298 -14 807 167 28 21 chr12 9059236 9059380 -134727075 + FRAM SINE Alu 18 162 -14 1284 20 33 0 chr12 9059493 9059645 -134726810 - L1PA3 LINE L1 0 6155 5999 572 101 0 71 chr12 9060140 9060239 -134726216 - AluSp/q SINE Alu -16 297 206 940 161 77 0 chr12 9060242 9060410 -134726045 + AluSp SINE Alu 131 311 -2 555 204 80 0 chr12 9062253 9062366 -134724089 + FLAM_A SINE Alu 13 134 -8 2044 116 24 3 chr12 9063195 9063489 -134722966 - AluSx SINE Alu -8 304 5 207 0 0 0 chr12 9064401 9064424 -134722031 + (T)n Simple_repeat Simple_repeat 1 23 0 917 115 0 0 chr12 9064695 9064825 -134721630 - FRAM SINE Alu -1 175 46 228 67 0 0 chr12 9065021 9065051 -134721404 + (T)n Simple_repeat Simple_repeat 1 30 0 217 208 208 0 chr12 9065052 9065124 -134721331 - MIR SINE MIR -53 209 123 539 174 114 0 chr12 9065163 9065295 -134721160 + L1MB7 LINE L1 6038 6184 0 2116 108 4 0 chr12 9066333 9066611 -134719844 + AluSc SINE Alu 1 279 -30 369 0 0 0 chr12 9066639 9066680 -134719775 + (TG)n Simple_repeat Simple_repeat 2 42 0 2690 188 19 61 chr12 9066687 9067325 -134719130 - L1MC1 LINE L1 -18 6315 5705 2287 92 0 0 chr12 9067330 9067638 -134718817 - AluSq SINE Alu 0 308 1 237 244 165 35 chr12 9068339 9068454 -134718001 - L2 LINE L2 -10 3303 3174 2161 86 11 0 chr12 9068529 9068809 -134717646 - AluSq SINE Alu -30 283 1 569 167 11 0 chr12 9069089 9069179 -134717276 - Tigger1 DNA MER2_type -1 2417 2327 * 12167 130 51 33 chr12 9069176 9069708 -134716747 - Tigger1 DNA MER2_type -276 2142 1621 2403 98 0 0 chr12 9069708 9070013 -134716442 - AluSx SINE Alu -7 305 1 12167 130 51 33 chr12 9070013 9071584 -134714871 - Tigger1 DNA MER2_type -797 1621 1 884 244 166 57 chr12 9071609 9071774 -134714681 - L1M3d LINE L1 -4516 2511 2365 1414 175 94 21 chr12 9071774 9071952 -134714503 - AluJb SINE Alu -5 307 99 270 0 0 0 chr12 9071952 9071982 -134714473 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1414 175 94 21 chr12 9071982 9072089 -134714366 - AluJb SINE Alu -213 99 1 884 244 166 57 chr12 9072089 9072537 -134713918 - L1M3d LINE L1 -4662 2365 1831 1503 254 141 21 chr12 9072575 9073086 -134713369 - L1M3d LINE L1 -6458 572 1 1600 133 17 0 chr12 9073240 9073480 -134712975 - AluSx SINE Alu -5 307 64 2130 166 39 52 chr12 9073655 9073825 -134712630 - L1MC1 LINE L1 -620 5713 5542 2150 134 0 0 chr12 9073825 9074117 -134712338 - AluSx SINE Alu -20 292 1 2130 166 39 52 chr12 9074117 9074468 -134711987 - L1MC1 LINE L1 -791 5542 5200 30 45 0 0 chr12 9074556 9074600 -134711855 + AT_rich Low_complexity Low_complexity 1 44 0 1719 167 128 8 chr12 9074633 9075090 -134711365 - L1MCa LINE L1 -3952 2474 2063 222 91 0 0 chr12 9075190 9075223 -134711232 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1935 129 21 14 chr12 9075226 9075506 -134710949 - AluSx SINE Alu -30 282 1 233 200 0 173 chr12 9075508 9075583 -134710872 - MER2 DNA MER2_type -1 344 283 1947 131 31 10 chr12 9075594 9075885 -134710570 + AluSx SINE Alu 1 297 -15 442 205 63 71 chr12 9075939 9076066 -134710389 - MER8 DNA MER2_type -89 150 25 1472 95 11 0 chr12 9126096 9126286 -134660169 - AluSp SINE Alu -121 192 1 2168 225 176 21 chr12 9126568 9126775 -134659680 - L1MD2 LINE L1 0 8042 7868 1469 157 142 19 chr12 9126775 9127043 -134659412 - AluJb SINE Alu -1 301 1 2168 225 176 21 chr12 9127043 9127076 -134659379 - L1MD2 LINE L1 -174 7868 7841 2242 99 0 3 chr12 9127076 9127370 -134659085 - AluSq SINE Alu -20 293 1 2168 225 176 21 chr12 9127370 9127963 -134658492 - L1MD2 LINE L1 -201 7841 7341 2223 114 7 0 chr12 9127963 9128271 -134658184 - AluSp SINE Alu -3 310 1 2168 225 176 21 chr12 9128271 9128379 -134658076 - L1MD2 LINE L1 -701 7341 6241 972 221 9 14 chr12 9128379 9128596 -134657859 - AluJo SINE Alu -91 221 6 1107 186 66 121 chr12 9129352 9129613 -134656842 - MLT1A2 LTR MaLR -2 372 98 851 165 0 0 chr12 9129613 9129740 -134656715 - FLAM_C SINE Alu -6 127 1 1412 196 46 14 chr12 9129745 9130030 -134656425 - AluJb SINE Alu -18 294 1 1107 186 66 121 chr12 9130030 9130143 -134656312 - MLT1A2 LTR MaLR -280 94 13 1855 166 10 3 chr12 9130167 9130463 -134655992 - AluSx SINE Alu -14 298 1 2255 92 14 0 chr12 9130607 9130902 -134655553 - L1PB2 LINE L1 -1 6150 5852 1963 152 0 14 chr12 9131048 9131184 -134655271 + AluSx SINE Alu 1 137 -175 2110 106 10 20 chr12 9131184 9131486 -134654969 + AluSg SINE Alu 1 299 -11 1963 152 0 14 chr12 9131486 9131646 -134654809 + AluSx SINE Alu 137 293 -19 955 104 6 104 chr12 9131718 9131756 -134654699 + L1PA16 LINE L1 6002 6042 -124 2143 73 4 4 chr12 9131756 9132029 -134654426 + AluY SINE Alu 1 273 -38 955 104 6 104 chr12 9132029 9132163 -134654292 + L1PA16 LINE L1 6042 6157 -9 1906 98 91 0 chr12 9132181 9132455 -134654000 - AluSg SINE Alu -11 299 1 2291 105 0 3 chr12 9133331 9133635 -134652820 + AluSx SINE Alu 3 305 -7 24 32 0 0 chr12 9134868 9134899 -134651556 + AT_rich Low_complexity Low_complexity 1 31 0 1727 137 19 72 chr12 9134910 9135103 -134651352 - AluSx SINE Alu -8 304 133 2182 80 4 0 chr12 9135103 9135379 -134651076 - L1PA6 LINE L1 0 6154 5878 1727 137 19 72 chr12 9135379 9135506 -134650949 - AluSx SINE Alu -179 133 1 2176 116 3 0 chr12 9135659 9135951 -134650504 - AluSp SINE Alu -20 293 1 2096 136 0 0 chr12 9135951 9136252 -134650203 - AluSx SINE Alu -11 301 1 2240 90 10 7 chr12 9136579 9136880 -134649575 + AluSx SINE Alu 5 306 -6 1377 179 86 14 chr12 9137018 9137297 -134649158 - AluJo SINE Alu -13 299 1 293 264 147 56 chr12 9137698 9137895 -134648560 + L2 LINE L2 3095 3309 -4 2312 102 7 0 chr12 9138017 9138311 -134648144 - AluSx SINE Alu -16 296 1 1403 178 102 29 chr12 9138462 9138776 -134647679 + MER44D DNA MER2_type 2 608 -1 351 0 0 0 chr12 9138777 9138816 -134647639 + (TG)n Simple_repeat Simple_repeat 1 39 0 241 172 47 0 chr12 9138817 9138881 -134647574 + (TA)n Simple_repeat Simple_repeat 1 67 0 1900 133 25 7 chr12 9138921 9139206 -134647249 + AluSg SINE Alu 1 290 -20 22 0 0 0 chr12 9139286 9139308 -134647147 + AT_rich Low_complexity Low_complexity 1 22 0 2032 111 24 0 chr12 9139479 9139767 -134646688 - AluSc SINE Alu -14 295 1 273 248 17 43 chr12 9139834 9139951 -134646504 - L1ME LINE L1 -244 6271 6158 1060 224 23 14 chr12 9140525 9140744 -134645711 - MER58A DNA MER1_type -3 221 1 258 195 115 0 chr12 9140857 9140944 -134645511 - MER5C DNA MER1_type 0 324 228 370 286 50 8 chr12 9140956 9141075 -134645380 - MER5C DNA MER1_type -200 124 1 1983 112 4 0 chr12 9142549 9142816 -134643639 + AluSx SINE Alu 20 287 -25 276 260 13 0 chr12 9142884 9142961 -134643494 + L1M4 LINE L1 5004 5081 -1065 195 42 0 0 chr12 9142974 9142998 -134643457 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2311 92 0 16 chr12 9143000 9143305 -134643150 - AluSq SINE Alu -13 300 1 664 324 121 4 chr12 9143354 9143610 -134642845 - MLT1H1 LTR MaLR -214 341 56 300 175 0 0 chr12 9143680 9143737 -134642718 + L1 LINE L1 4777 4833 -1313 1521 274 96 54 chr12 9144756 9145031 -134641424 + L2 LINE L2 2100 2362 -952 201 74 0 0 chr12 9145031 9145058 -134641397 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1521 274 96 54 chr12 9145058 9145070 -134641385 + L2 LINE L2 2362 2372 -942 1598 149 7 76 chr12 9145070 9145219 -134641236 - AluJb SINE Alu -32 280 161 2063 134 7 0 chr12 9145219 9145509 -134640946 - AluSx SINE Alu -19 293 2 1598 149 7 76 chr12 9145509 9145660 -134640795 - AluJb SINE Alu -151 161 1 1521 274 96 54 chr12 9145660 9145986 -134640469 + L2 LINE L2 2372 2750 -564 1464 157 71 48 chr12 9145986 9146131 -134640324 + AluJb SINE Alu 1 141 -171 1889 160 7 7 chr12 9146131 9146431 -134640024 + AluSx SINE Alu 1 300 -12 1464 157 71 48 chr12 9146431 9146579 -134639876 + AluJb SINE Alu 141 301 -11 1521 274 96 54 chr12 9146579 9146670 -134639785 + L2 LINE L2 2750 2836 -478 420 227 31 16 chr12 9146675 9146803 -134639652 + L1ME3A LINE L1 5839 5968 -202 1968 131 34 7 chr12 9146944 9147241 -134639214 - AluSx SINE Alu -7 305 1 1084 172 252 48 chr12 9147497 9147747 -134638708 + AluJo SINE Alu 1 301 -1 286 263 70 72 chr12 9148017 9148219 -134638236 - L1ME LINE L1 -527 6037 5835 896 111 0 15 chr12 9148219 9148354 -134638101 - FLAM_C SINE Alu 0 133 1 286 263 70 72 chr12 9148354 9148524 -134637931 - L1ME LINE L1 -729 5835 5666 769 214 0 0 chr12 9148551 9148677 -134637778 - FLAM_C SINE Alu -16 127 2 387 299 101 37 chr12 9148681 9149136 -134637319 - L1ME LINE L1 -872 5668 5185 2054 120 11 0 chr12 9149373 9149656 -134636799 + AluSx SINE Alu 1 286 -26 282 258 26 17 chr12 9149714 9149890 -134636565 - L1ME LINE L1 -689 5473 5297 265 220 202 18 chr12 9149893 9150002 -134636453 - MER20B DNA MER1_type -654 129 1 7806 40 17 0 chr12 9150203 9151185 -134635270 - L1PA5 LINE L1 0 6154 5168 1057 185 32 5 chr12 9151325 9151514 -134634941 + AluJb SINE Alu 1 194 -118 2238 103 0 15 chr12 9151671 9152000 -134634455 - LTR17 LTR ERV1 -456 324 1 2502 49 0 6 chr12 9152000 9152307 -134634148 - HERV17 LTR ERV1 0 8626 6834 302 77 0 0 chr12 9152283 9152322 -134634133 - HERV17 LTR ERV1 -1078 7548 7510 * 1158 82 32 0 chr12 9152318 9152476 -134633979 - HERV17 LTR ERV1 -1479 7147 6985 * 41666 53 15 3 chr12 9152467 9158220 -134628235 - HERV17 LTR ERV1 -2724 5902 1 3684 89 42 4 chr12 9158220 9158726 -134627729 - LTR17 LTR ERV1 0 780 256 351 323 94 45 chr12 9158728 9159417 -134627038 - L1ME LINE L1 -2409 4131 3280 22 35 0 0 chr12 9159530 9159559 -134626896 + AT_rich Low_complexity Low_complexity 1 29 0 322 237 75 16 chr12 9159657 9159845 -134626610 - L1MDa LINE L1 -3890 2650 2453 324 255 7 128 chr12 9160165 9160228 -134626227 - L2 LINE L2 0 3313 3275 2059 120 34 0 chr12 9160228 9160519 -134625936 - AluSq SINE Alu -12 301 1 324 255 7 128 chr12 9160519 9160596 -134625859 - L2 LINE L2 -38 3275 3190 3786 157 55 70 chr12 9160896 9161764 -134624691 - MER21A LTR ERV1 -3 860 1 2191 125 13 0 chr12 9162136 9162441 -134624014 - AluSx SINE Alu -3 309 1 21 0 0 0 chr12 9163231 9163252 -134623203 + AT_rich Low_complexity Low_complexity 1 21 0 261 83 0 0 chr12 9167468 9167504 -134618951 + (T)n Simple_repeat Simple_repeat 1 36 0 2123 121 0 3 chr12 9171316 9171613 -134614842 + AluSq SINE Alu 1 296 -17 853 158 107 23 chr12 9173617 9173794 -134612661 - Tigger3(Golem) DNA MER2_type -23 3006 2815 2054 109 31 3 chr12 9173808 9174102 -134612353 + AluSx SINE Alu 1 302 -10 1267 111 34 58 chr12 9174109 9174317 -134612138 + AluSx SINE Alu 2 204 -108 1742 147 43 0 chr12 9174324 9174603 -134611852 + AluJb SINE Alu 1 291 -21 363 283 123 37 chr12 9174653 9175051 -134611404 - LTR16B LTR ERVL -1 463 12 531 338 37 37 chr12 9175139 9175467 -134610988 - HERVL LTR ERVL -2464 3190 2863 2346 68 0 4 chr12 9175532 9175813 -134610642 + AluSg SINE Alu 21 300 -10 363 315 168 0 chr12 9175819 9175962 -134610493 - HERVL LTR ERVL -2146 2850 2684 1743 167 161 13 chr12 9175963 9176335 -134610120 - MSTA LTR MaLR -1 427 1 5459 184 45 9 chr12 9176335 9177332 -134609123 - MSTA-int LTR MaLR 0 1651 619 38093 92 36 21 chr12 9177332 9183894 -134602561 + HERV9 LTR ERV1 17 4944 0 559 175 73 32 chr12 9183894 9184098 -134602357 + HERV9 LTR ERV1 728 1138 -5758 330 180 0 0 chr12 9184100 9184161 -134602294 + HERV9 LTR ERV1 7504 7564 -835 * 7736 100 69 87 chr12 9184157 9186347 -134600108 + pTR5 LTR ERV1 504 2438 0 2232 76 0 0 chr12 9186364 9186654 -134599801 - AluY SINE Alu -21 290 1 789 206 6 6 chr12 9186657 9186817 -134599638 - MSTA-int LTR MaLR -1040 611 452 * 1513 135 37 0 chr12 9186806 9187051 -134599404 - MSTA-int LTR MaLR -1397 254 1 2200 132 116 0 chr12 9187051 9187423 -134599032 - MSTA LTR MaLR -13 415 1 1715 130 0 88 chr12 9187684 9187830 -134598625 + AluSx SINE Alu 1 108 -204 2175 122 0 0 chr12 9187830 9188142 -134598313 + AluSx SINE Alu 1 312 0 1715 130 0 88 chr12 9188142 9188302 -134598153 + AluSx SINE Alu 108 280 -32 252 111 0 0 chr12 9188366 9188411 -134598044 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 3179 135 86 2 chr12 9188469 9188941 -134597514 - L1MB1 LINE L1 -1 6167 5637 228 86 0 0 chr12 9188941 9188976 -134597479 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3179 135 86 2 chr12 9188976 9189075 -134597380 - L1MB1 LINE L1 -531 5637 5548 321 333 82 6 chr12 9189257 9189428 -134597027 - L1ME4a LINE L1 -169 5952 5769 1783 152 3 21 chr12 9189499 9189789 -134596666 - AluJo SINE Alu -24 288 4 540 245 0 0 chr12 9189863 9189961 -134596494 + FLAM_A SINE Alu 3 100 -42 7462 46 3 0 chr12 9189961 9191573 -134594882 + L1PA5 LINE L1 4555 6154 0 3058 55 0 0 chr12 9191573 9191975 -134594480 + L1PA6 LINE L1 5770 6176 0 21 36 0 0 chr12 9192387 9192415 -134594040 + AT_rich Low_complexity Low_complexity 1 28 0 2200 84 14 3 chr12 9192426 9192722 -134593733 + AluSq SINE Alu 1 299 -14 3022 143 51 8 chr12 9193197 9193687 -134592768 - MER9 LTR ERVK 0 511 1 2194 70 0 20 chr12 9194056 9194358 -134592097 + AluY SINE Alu 1 296 -15 333 102 45 23 chr12 9194980 9195068 -134591387 + (TA)n Simple_repeat Simple_repeat 1 90 0 2823 74 112 0 chr12 9195073 9195476 -134590979 + LTR7 LTR ERV1 1 448 -2 19743 103 16 33 chr12 9195478 9198519 -134587936 + HERVH LTR ERV1 1 2987 -4726 917 135 20 0 chr12 9198513 9198661 -134587794 + HERVH LTR ERV1 3140 3290 -4423 * 3617 89 4 6 chr12 9198651 9199154 -134587301 + HERVH LTR ERV1 3492 3993 -3720 2955 151 0 2 chr12 9199156 9199774 -134586681 + HERVH LTR ERV1 4488 5149 -2564 1414 130 19 0 chr12 9199775 9199991 -134586464 + HERVH LTR ERV1 5600 5819 -1894 2299 99 59 13 chr12 9199991 9200364 -134586091 + HERVH LTR ERV1 7324 7713 0 2897 71 101 0 chr12 9200364 9200771 -134585684 + LTR7 LTR ERV1 1 448 -2 1710 93 4 4 chr12 9200920 9201157 -134585298 - AluSg SINE Alu -15 295 59 1722 115 4 4 chr12 9201157 9201399 -134585056 + AluSp SINE Alu 10 252 -61 1009 112 0 0 chr12 9201399 9201542 -134584913 + AluSg/x SINE Alu 165 307 -3 262 200 0 0 chr12 9201673 9201718 -134584737 - L2 LINE L2 -7 3306 3262 2101 62 31 14 chr12 9201781 9202070 -134584385 + AluY SINE Alu 1 294 -17 350 103 103 12 chr12 9202710 9202875 -134583580 + (TA)n Simple_repeat Simple_repeat 1 180 0 206 138 17 69 chr12 9202883 9202941 -134583514 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 310 159 91 57 chr12 9202947 9203035 -134583420 - L1MC4 LINE L1 -1340 6702 6612 327 112 96 0 chr12 9203038 9203163 -134583292 + (TA)n Simple_repeat Simple_repeat 1 137 0 2283 77 8 2 chr12 9203168 9203525 -134582930 + LTR7 LTR ERV1 1 448 -2 213 132 0 26 chr12 9203532 9203570 -134582885 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 2211 80 7 7 chr12 9203577 9203876 -134582579 - AluSp SINE Alu -14 299 1 23 0 0 0 chr12 9203878 9203901 -134582554 + AT_rich Low_complexity Low_complexity 1 23 0 461 90 104 0 chr12 9203937 9204004 -134582451 - MLT2D LTR ERVL -51 363 290 * 585 151 0 11 chr12 9204003 9204096 -134582359 - MLT1C LTR MaLR -375 92 1 26 0 0 0 chr12 9204952 9204978 -134581477 + AT_rich Low_complexity Low_complexity 1 26 0 2134 95 3 13 chr12 9204978 9205284 -134581171 + AluSq SINE Alu 1 303 -10 279 0 0 0 chr12 9205285 9205316 -134581139 + (TA)n Simple_repeat Simple_repeat 2 32 0 278 125 0 0 chr12 9205852 9205892 -134580563 + Alu SINE Alu 8 47 -254 1437 106 0 0 chr12 9205892 9206090 -134580365 + AluSg/x SINE Alu 98 295 -17 431 249 11 126 chr12 9206282 9206632 -134579823 - L1MCa LINE L1 -5057 1884 1575 1590 200 0 16 chr12 9206634 9206949 -134579506 - AluJb SINE Alu -2 310 1 2137 251 54 62 chr12 9207020 9207865 -134578590 - L1MCa LINE L1 -4892 1531 693 1178 273 65 58 chr12 9207908 9208356 -134578099 - L1MCa LINE L1 -5824 599 156 219 36 0 0 chr12 9208356 9208384 -134578071 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 2117 93 0 7 chr12 9208384 9208664 -134577791 - AluSg SINE Alu -32 278 1 1178 273 65 58 chr12 9208664 9208752 -134577703 - L1MCa LINE L1 -6266 157 58 1612 160 31 20 chr12 9208767 9209060 -134577395 - AluJo SINE Alu -11 301 6 1917 118 59 0 chr12 9209138 9209426 -134577029 - AluSq SINE Alu -3 310 6 264 268 49 0 chr12 9209473 9209555 -134576900 - L1ME LINE L1 -292 5829 5744 361 266 104 86 chr12 9209633 9209960 -134576495 + MLT1K LTR MaLR 84 416 -172 1646 146 10 30 chr12 9210151 9210343 -134576112 - AluJo SINE Alu -11 301 116 3267 149 29 91 chr12 9210343 9210614 -134575841 + LTR8 LTR ERV1 1 287 -404 2533 40 0 0 chr12 9210614 9210914 -134575541 + AluY SINE Alu 1 300 -11 3267 149 29 91 chr12 9210914 9211379 -134575076 + LTR8 LTR ERV1 287 691 0 1646 146 10 30 chr12 9211379 9211487 -134574968 - AluJo SINE Alu -196 116 7 1898 149 16 7 chr12 9211545 9211854 -134574601 + AluJb SINE Alu 1 312 0 348 312 37 17 chr12 9211888 9212093 -134574362 - L1ME LINE L1 -459 5662 5480 2080 106 0 26 chr12 9212093 9212395 -134574060 - AluSg SINE Alu -16 294 1 278 253 0 38 chr12 9213229 9213308 -134573147 + L2 LINE L2 3192 3267 -46 243 0 0 0 chr12 9214407 9214434 -134572021 + (T)n Simple_repeat Simple_repeat 1 27 0 29 0 0 0 chr12 9214515 9214544 -134571911 + AT_rich Low_complexity Low_complexity 1 29 0 5608 131 9 37 chr12 9214562 9216633 -134569822 - L1MA3 LINE L1 -27 7692 5740 1078 131 0 27 chr12 9216634 9216799 -134569656 - AluSg/x SINE Alu -16 294 133 1848 143 13 0 chr12 9216799 9217100 -134569355 - AluSx SINE Alu -4 308 4 1078 131 0 27 chr12 9217100 9217117 -134569338 - AluSg/x SINE Alu -177 133 117 1059 115 12 107 chr12 9217129 9217243 -134569212 - L1MA3 LINE L1 -4845 2720 2640 1845 125 14 0 chr12 9217243 9217524 -134568931 + AluSx SINE Alu 1 285 -27 1059 115 12 107 chr12 9217524 9217653 -134568802 - L1MA3 LINE L1 -4925 2640 2500 * 9415 146 52 3 chr12 9217636 9219429 -134567026 - L1MA3 LINE L1 -5270 2295 16 1900 128 30 3 chr12 9219565 9219861 -134566594 + AluJb SINE Alu 1 304 -8 2073 140 0 0 chr12 9220228 9220536 -134565919 - AluSx SINE Alu -4 308 1 1479 152 35 58 chr12 9221126 9221436 -134565019 - AluJb SINE Alu -9 303 1 3298 159 19 90 chr12 9221755 9221921 -134564534 - LTR8 LTR ERV1 0 691 515 2495 64 0 0 chr12 9221921 9222234 -134564221 - AluSp SINE Alu 0 313 1 3298 159 19 90 chr12 9222234 9222811 -134563644 - LTR8 LTR ERV1 -176 515 1 947 109 65 0 chr12 9222812 9222950 -134563505 - HUERS-P1 LTR ERV1 -1 6262 6116 417 145 48 0 chr12 9222950 9223033 -134563422 - LTR8A LTR ERV1 -640 87 1 1985 138 3 0 chr12 9223159 9223457 -134562998 - AluSx SINE Alu -13 299 1 1921 118 33 10 chr12 9223575 9223880 -134562575 - AluSx SINE Alu 0 312 1 2420 66 0 0 chr12 9225916 9226219 -134560236 + AluY SINE Alu 15 303 -8 2319 96 3 0 chr12 9226666 9226967 -134559488 - AluSq SINE Alu -11 302 1 1926 137 17 3 chr12 9227210 9227503 -134558952 - AluSx SINE Alu -15 297 1 2111 99 3 42 chr12 9227784 9228097 -134558358 + AluSg SINE Alu 1 301 -9 2608 51 0 10 chr12 9228815 9229128 -134557327 + AluY SINE Alu 1 310 -1 624 291 62 9 chr12 9229497 9229707 -134556748 - MIR SINE MIR -40 222 2 2175 101 10 7 chr12 9229909 9230231 -134556224 - AluSp SINE Alu 0 313 1 460 139 0 14 chr12 9230263 9230335 -134556120 + AluS SINE Alu 2 72 -237 25 0 0 0 chr12 9230568 9230593 -134555862 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr12 9230653 9230681 -134555774 + AT_rich Low_complexity Low_complexity 1 28 0 785 266 14 56 chr12 9230692 9230978 -134555477 + AluSp SINE Alu 24 297 -16 1096 162 21 87 chr12 9230994 9231087 -134555368 - AluJo SINE Alu -87 225 127 1831 124 35 0 chr12 9231087 9231346 -134555109 - AluSx SINE Alu -13 299 32 1096 162 21 87 chr12 9231346 9231493 -134554962 - AluJo SINE Alu -185 127 1 2353 49 0 11 chr12 9232021 9232349 -134554106 - AluY SINE Alu 0 325 1 899 95 0 0 chr12 9233513 9233629 -134552826 + AluSq/x SINE Alu 1 116 -197 24 0 0 0 chr12 9233629 9233653 -134552802 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr12 9233703 9233725 -134552730 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2485 75 0 7 chr12 9233895 9234203 -134552252 + AluY SINE Alu 1 306 -5 1079 163 27 0 chr12 9234207 9234428 -134552027 + MER33 DNA MER1_type 40 266 -58 2642 33 0 7 chr12 9235396 9235701 -134550754 + AluY SINE Alu 1 303 -8 301 293 138 27 chr12 9235717 9235905 -134550550 + MLT1H LTR MaLR 195 403 -146 307 135 19 0 chr12 9236617 9236669 -134549786 - MADE1 DNA Mariner 0 80 28 542 216 85 80 chr12 9236779 9236864 -134549591 + MER69A DNA AcHobo 1 84 -2442 972 82 0 0 chr12 9236864 9236999 -134549456 + (TTCC)n Simple_repeat Simple_repeat 3 137 0 2188 108 3 0 chr12 9236999 9237287 -134549168 - AluSg SINE Alu -21 289 1 542 216 85 80 chr12 9237287 9237376 -134549079 + MER69A DNA AcHobo 83 177 0 1186 141 22 5 chr12 9237762 9237946 -134548509 + AluSg/x SINE Alu 106 292 -20 22 0 0 0 chr12 9238026 9238048 -134548407 + AT_rich Low_complexity Low_complexity 1 22 0 1157 243 21 0 chr12 9238219 9238507 -134547948 - AluSc SINE Alu -5 294 1 207 100 0 0 chr12 9239399 9239429 -134547026 + (T)n Simple_repeat Simple_repeat 1 30 0 328 269 34 5 chr12 9239715 9239923 -134546532 + Charlie1 DNA MER1_type 2537 2750 -11 336 341 5 29 chr12 9240016 9240221 -134546234 - AluY SINE Alu 0 301 102 787 248 11 56 chr12 9240389 9240507 -134545948 + L1ME1 LINE L1 4878 5000 -1146 1576 216 7 0 chr12 9240507 9240808 -134545647 + AluJo SINE Alu 1 303 -9 787 248 11 56 chr12 9240808 9240959 -134545496 + L1ME1 LINE L1 5000 5135 -1011 3242 176 46 37 chr12 9240967 9241619 -134544836 - MER21B LTR ERV1 -3 860 203 1601 138 44 40 chr12 9241634 9241909 -134544546 - MER21B LTR ERV1 -572 291 16 1427 156 48 30 chr12 9241941 9242211 -134544244 + Tigger3b DNA MER2_type 13 287 -944 915 191 0 24 chr12 9242216 9242384 -134544071 - FAM SINE Alu -21 164 1 2489 98 36 10 chr12 9242391 9242778 -134543677 + Tigger3b DNA MER2_type 287 683 -548 1244 139 5 0 chr12 9242782 9242969 -134543486 + AluSg/x SINE Alu 118 305 -5 2656 130 57 116 chr12 9242983 9243546 -134542909 + Tigger3b DNA MER2_type 701 1230 -1 2192 211 20 62 chr12 9243546 9244130 -134542325 + L1ME1 LINE L1 5602 6161 -5 712 181 35 0 chr12 9244152 9244268 -134542187 + FLAM_A SINE Alu 1 120 -13 276 149 0 0 chr12 9244271 9244318 -134542137 + (TATG)n Simple_repeat Simple_repeat 2 48 0 284 390 15 0 chr12 9244322 9244458 -134541997 - L2 LINE L2 -676 2638 2501 735 176 0 8 chr12 9244477 9244596 -134541859 + FLAM_C SINE Alu 1 118 -25 213 330 57 0 chr12 9244612 9244700 -134541755 - L2 LINE L2 -836 2478 2386 20786 158 55 30 chr12 9244754 9245658 -134540797 - L1MA3 LINE L1 -473 7251 6372 711 119 9 28 chr12 9245658 9245767 -134540688 - FLAM_C SINE Alu 0 143 37 20786 158 55 30 chr12 9245767 9247068 -134539387 - L1MA3 LINE L1 -1352 6372 5106 2093 96 7 0 chr12 9247068 9247339 -134539116 - AluSq SINE Alu 0 313 41 20786 158 55 30 chr12 9247339 9247449 -134539006 - L1MA3 LINE L1 -2618 5106 5000 2017 145 0 3 chr12 9247449 9247746 -134538709 + AluSx SINE Alu 1 296 -16 20786 158 55 30 chr12 9247746 9250512 -134535943 - L1MA3 LINE L1 -2724 5000 1882 2422 120 29 56 chr12 9250512 9250886 -134535569 + THE1B LTR MaLR 1 364 0 20786 158 55 30 chr12 9250886 9252807 -134533648 - L1MA3 LINE L1 -5842 1882 12 239 318 182 0 chr12 9253625 9253713 -134532742 - L2 LINE L2 0 3272 3169 1177 146 0 0 chr12 9254161 9254319 -134532136 - FRAM SINE Alu -4 162 5 251 267 9 48 chr12 9255102 9255210 -134531245 + CT-rich Low_complexity Low_complexity 1 103 0 1491 209 83 23 chr12 9255533 9255883 -134530572 + MLT1A2 LTR MaLR 4 374 0 183 188 0 0 chr12 9256403 9256451 -134530004 + A-rich Low_complexity Low_complexity 3 50 0 1894 131 13 45 chr12 9256792 9257105 -134529350 + AluSx SINE Alu 1 303 -9 264 330 144 0 chr12 9257452 9257617 -134528838 + MIR3 SINE MIR 1 193 -15 264 279 23 23 chr12 9257619 9257705 -134528750 - MIR SINE MIR -87 175 90 884 277 127 4 chr12 9257767 9258180 -134528275 + L2 LINE L2 2727 3203 -110 3249 138 37 42 chr12 9258187 9258349 -134528106 - L1MA5 LINE L1 -63 6237 6076 2209 138 3 37 chr12 9258349 9258698 -134527757 + MER1B DNA MER1_type 1 337 0 3249 138 37 42 chr12 9258698 9259001 -134527454 - L1MA5 LINE L1 -224 6076 5773 2297 55 4 0 chr12 9259001 9259273 -134527182 - L1PA7 LINE L1 -4 6150 5878 3249 138 37 42 chr12 9259273 9259407 -134527048 - L1MA5 LINE L1 -527 5773 5640 28 95 0 0 chr12 9259430 9259514 -134526941 + AT_rich Low_complexity Low_complexity 1 84 0 1502 180 3 44 chr12 9259582 9259876 -134526579 + AluJo SINE Alu 1 282 -30 6370 25 0 0 chr12 9259968 9260659 -134525796 + L1PA3 LINE L1 5464 6154 -1 362 141 12 24 chr12 9260922 9261007 -134525448 - Zaphod DNA AcHobo -3041 990 907 315 0 0 0 chr12 9261417 9261452 -134525003 + (TG)n Simple_repeat Simple_repeat 2 36 0 1731 173 0 0 chr12 9261496 9261762 -134524693 + AluJb SINE Alu 1 266 -46 234 0 0 0 chr12 9261767 9261793 -134524662 + (CAA)n Simple_repeat Simple_repeat 2 27 0 36 23 0 0 chr12 9262343 9262386 -134524069 + AT_rich Low_complexity Low_complexity 1 43 0 3045 167 21 2 chr12 9262536 9263022 -134523433 - LTR42 LTR ERVL 0 495 1 1460 193 86 12 chr12 9263507 9263964 -134522491 + L1MB3 LINE L1 5660 6176 -7 2102 117 13 10 chr12 9264305 9264604 -134521851 - AluSx SINE Alu -10 302 3 355 247 0 0 chr12 9264619 9264696 -134521759 - MIR SINE MIR -113 149 73 812 96 29 0 chr12 9265362 9265466 -134520989 + FLAM_C SINE Alu 21 127 -16 2023 136 3 3 chr12 9265657 9265952 -134520503 - AluJb SINE Alu -13 299 5 199 241 106 128 chr12 9265961 9266023 -134520432 + MIR SINE MIR 50 112 -150 1983 153 0 3 chr12 9266023 9266317 -134520138 - AluSx SINE Alu -19 293 1 199 241 106 128 chr12 9266317 9266395 -134520060 + MIR SINE MIR 112 187 -75 1256 113 11 0 chr12 9266402 9266579 -134519876 + AluSq SINE Alu 125 303 -10 2192 96 7 7 chr12 9268386 9268679 -134517776 + AluSc SINE Alu 6 298 -11 259 197 40 26 chr12 9268866 9268942 -134517513 + GA-rich Low_complexity Low_complexity 5 81 0 221 0 35 0 chr12 9269017 9269046 -134517409 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2060 123 3 7 chr12 9269997 9270289 -134516166 + AluSx SINE Alu 1 291 -21 2180 97 0 29 chr12 9270775 9271084 -134515371 + AluSg SINE Alu 1 300 -10 180 0 0 0 chr12 9271261 9271281 -134515174 + (A)n Simple_repeat Simple_repeat 1 20 0 1559 120 20 162 chr12 9271525 9271876 -134514579 + AluJb SINE Alu 1 301 -1 1108 277 69 6 chr12 9272413 9272774 -134513681 + L1MC4a LINE L1 5523 5906 -1902 22 0 0 0 chr12 9272940 9272962 -134513493 + AT_rich Low_complexity Low_complexity 1 22 0 2196 90 3 20 chr12 9275481 9275781 -134510674 + AluSq SINE Alu 1 295 -18 586 317 113 6 chr12 9275907 9276226 -134510229 + L1MEc LINE L1 22 374 -6022 1805 170 36 22 chr12 9276476 9276790 -134509665 + L1MB2 LINE L1 5767 6088 -83 1540 218 48 61 chr12 9276790 9277185 -134509270 - MLT1B LTR MaLR 0 390 1 1805 170 36 22 chr12 9277185 9277228 -134509227 + L1MB2 LINE L1 6088 6129 -42 2730 111 67 7 chr12 9277249 9277653 -134508802 - MSTA LTR MaLR 0 428 1 1298 163 125 29 chr12 9277664 9277977 -134508478 + L1MD3 LINE L1 6774 7116 -879 345 267 11 0 chr12 9277977 9278067 -134508388 + MLT1F1 LTR MaLR 35 125 -442 821 183 17 39 chr12 9278069 9278249 -134508206 + L1MD3 LINE L1 7404 7579 -416 1289 147 69 17 chr12 9278250 9278482 -134507973 + MER21A LTR ERV1 2 245 -686 3056 181 29 26 chr12 9278527 9279074 -134507381 + MER21A LTR ERV1 377 925 -6 1759 199 68 10 chr12 9279082 9279479 -134506976 + L1MD3 LINE L1 7576 7995 0 434 277 40 40 chr12 9279469 9279797 -134506658 + L1MEc LINE L1 696 1023 -5182 * 939 122 8 0 chr12 9279810 9279941 -134506514 + AluSq/x SINE Alu 1 132 -181 1458 121 0 5 chr12 9279945 9280144 -134506311 + AluSg/x SINE Alu 85 282 -28 1312 296 36 34 chr12 9280162 9280662 -134505793 + L1MEc LINE L1 1071 1574 -4822 2330 105 0 0 chr12 9280662 9280967 -134505488 + AluSq SINE Alu 1 305 -8 1312 296 36 34 chr12 9280967 9281250 -134505205 + L1MEc LINE L1 1574 1855 -4541 * 1789 234 80 81 chr12 9281244 9281417 -134505038 + L1MEc LINE L1 2168 2340 -3875 2316 113 0 0 chr12 9281417 9281718 -134504737 + AluSq SINE Alu 1 301 -12 1789 234 80 81 chr12 9281718 9281839 -134504616 + L1MEc LINE L1 2340 2460 -3755 1787 215 83 59 chr12 9281839 9282332 -134504123 - MLT1D LTR MaLR 0 505 1 1789 234 80 81 chr12 9282332 9283200 -134503255 + L1MEc LINE L1 2460 3328 -2887 658 310 43 47 chr12 9283206 9283662 -134502793 + L1M2a LINE L1 12 1246 -5852 2567 201 42 29 chr12 9283844 9284144 -134502311 + L1M2a LINE L1 1939 2234 -4934 2117 108 3 56 chr12 9284144 9284468 -134501987 + AluSq SINE Alu 1 307 -6 2567 201 42 29 chr12 9284468 9285043 -134501412 + L1M2a LINE L1 2234 2841 -4327 2058 137 3 10 chr12 9285045 9285344 -134501111 + AluSx SINE Alu 1 297 -15 1848 163 0 0 chr12 9285348 9285625 -134500830 + AluSx SINE Alu 1 277 -35 734 51 17 25 chr12 9285627 9285745 -134500710 + (GAAA)n Simple_repeat Simple_repeat 2 118 0 594 180 78 0 chr12 9285757 9285885 -134500570 + L1M2a LINE L1 2704 2841 -4327 602 219 106 8 chr12 9285888 9286011 -134500444 + AluJo SINE Alu 2 136 -176 638 231 57 45 chr12 9286032 9286279 -134500176 + L1M4c LINE L1 2905 3154 -4411 1204 127 0 0 chr12 9286327 9286493 -134499962 + AluSg/x SINE Alu 124 289 -23 12530 203 31 36 chr12 9286640 9286849 -134499606 + L1M4c LINE L1 3415 3624 -3941 2255 82 0 36 chr12 9286849 9287155 -134499300 + AluY SINE Alu 1 295 -16 12530 203 31 36 chr12 9287155 9287316 -134499139 + L1M4c LINE L1 3624 3784 -3781 2040 126 0 17 chr12 9287316 9287610 -134498845 + AluSq SINE Alu 5 293 -20 12530 203 31 36 chr12 9287610 9288501 -134497954 + L1M4c LINE L1 3784 4678 -2887 1832 168 13 7 chr12 9288501 9288811 -134497644 + AluJb SINE Alu 1 312 0 12530 203 31 36 chr12 9288811 9289163 -134497292 + L1M4c LINE L1 4678 5030 -2535 2126 115 0 14 chr12 9289163 9289476 -134496979 + AluSx SINE Alu 1 309 0 12530 203 31 36 chr12 9289476 9289896 -134496559 + L1M4c LINE L1 5030 5451 -2114 2477 46 0 0 chr12 9289896 9290217 -134496238 + AluY SINE Alu 1 321 0 12530 203 31 36 chr12 9290217 9290723 -134495732 + L1M4c LINE L1 5451 5958 -1607 1227 135 89 163 chr12 9290723 9291116 -134495339 - MLT1A1 LTR MaLR 0 365 2 12530 203 31 36 chr12 9291116 9291174 -134495281 + L1M4c LINE L1 5958 6015 -1550 2301 94 0 55 chr12 9291174 9291504 -134494951 - AluSx SINE Alu 0 312 1 12530 203 31 36 chr12 9291504 9291904 -134494551 + L1M4c LINE L1 6015 6415 -1150 2470 57 0 7 chr12 9291904 9292200 -134494255 + AluY SINE Alu 1 294 -17 12530 203 31 36 chr12 9292200 9292483 -134493972 + L1M4c LINE L1 6415 6698 -867 554 159 11 0 chr12 9292493 9292581 -134493874 - FLAM_A SINE Alu -14 128 40 2074 77 37 53 chr12 9292582 9292881 -134493574 + AluSx SINE Alu 11 304 -8 2043 247 87 27 chr12 9292891 9293778 -134492677 + L1M4 LINE L1 3260 4199 -1947 1163 251 125 25 chr12 9293825 9293991 -134492464 - L1MEc LINE L1 -2594 3621 3473 1033 241 32 0 chr12 9293991 9294207 -134492248 - MER58A DNA MER1_type 0 224 2 1163 251 125 25 chr12 9294207 9294218 -134492237 - L1MEc LINE L1 -2742 3473 3465 1865 157 0 7 chr12 9294218 9294531 -134491924 - AluJb SINE Alu 0 311 1 1163 251 125 25 chr12 9294531 9294830 -134491625 - L1MEc LINE L1 -2750 3465 3095 2418 218 104 57 chr12 9295387 9296623 -134489832 - L1MEc LINE L1 -3129 3086 1861 1608 153 20 43 chr12 9296623 9296923 -134489532 - AluJo SINE Alu -19 293 1 2418 218 104 57 chr12 9296923 9296996 -134489459 - L1MEc LINE L1 -4354 1861 1793 189 0 0 0 chr12 9296996 9297017 -134489438 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 13759 26 5 0 chr12 9297037 9299379 -134487076 - L1PA4 LINE L1 -23 6132 3782 * 13940 32 0 1 chr12 9299355 9301013 -134485442 + L1P LINE L1 2180 3836 -2310 1854 260 72 63 chr12 9301010 9301615 -134484840 - L1MEc LINE L1 -4602 1794 1196 * 2099 136 0 13 chr12 9301615 9301931 -134484524 - AluJb SINE Alu 0 312 1 1854 260 72 63 chr12 9301931 9302277 -134484178 - L1MEc LINE L1 -5200 1196 855 1663 195 0 0 chr12 9302277 9302559 -134483896 - AluJo SINE Alu -30 282 1 1854 260 72 63 chr12 9302559 9302646 -134483809 - L1MEc LINE L1 -5541 855 770 2023 115 11 28 chr12 9302646 9302933 -134483522 + AluSq SINE Alu 2 283 -30 207 0 0 0 chr12 9302936 9302959 -134483496 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1854 260 72 63 chr12 9302959 9303026 -134483429 - L1MEc LINE L1 -5627 769 673 1131 282 4 0 chr12 9303026 9303274 -134483181 - LTR40a LTR ERVL 0 519 271 365 247 62 0 chr12 9303274 9303371 -134483084 + MIR SINE MIR 90 192 -70 1166 244 8 18 chr12 9303482 9303763 -134482692 - LTR40a LTR ERVL -232 262 17 568 274 24 12 chr12 9303807 9303971 -134482484 - L1MEc LINE L1 -5756 640 475 1331 279 10 25 chr12 9303974 9304379 -134482076 - L1MEc LINE L1 -5963 433 35 779 259 68 3 chr12 9304398 9304692 -134481763 + L1ME2 LINE L1 4210 4522 -1624 1141 239 139 109 chr12 9304692 9305398 -134481057 - LTR8A LTR ERV1 0 727 1 1519 216 65 34 chr12 9305398 9305491 -134480964 + L1ME2 LINE L1 4519 4608 -1538 1940 148 7 7 chr12 9305491 9305788 -134480667 - AluJb SINE Alu -15 297 1 1519 216 65 34 chr12 9305788 9306167 -134480288 + L1ME2 LINE L1 4608 5006 -1140 813 183 8 0 chr12 9306167 9306298 -134480157 + AluJo SINE Alu 3 134 -178 246 224 109 61 chr12 9306353 9306399 -134480056 + L1ME2 LINE L1 5738 5780 -382 3905 165 43 63 chr12 9306399 9307144 -134479311 + MER44D DNA MER2_type 4 605 0 246 224 109 61 chr12 9307144 9307262 -134479193 + L1ME2 LINE L1 5780 5910 -252 1324 231 169 105 chr12 9307262 9307616 -134478839 - MER52A LTR ERV1 0 1755 1425 2055 138 0 7 chr12 9307616 9307920 -134478535 + AluSx SINE Alu 1 302 -10 1324 231 169 105 chr12 9307920 9308586 -134477869 - MER52A LTR ERV1 -330 1425 669 710 198 29 122 chr12 9308604 9308671 -134477784 + L1ME2 LINE L1 5916 5988 -176 1712 191 16 7 chr12 9308671 9308980 -134477475 + AluJb SINE Alu 1 312 0 710 198 29 122 chr12 9308980 9309150 -134477305 + L1ME2 LINE L1 5988 6131 -33 2304 94 7 0 chr12 9309150 9309447 -134477008 + AluSg SINE Alu 1 299 -11 803 251 54 4 chr12 9309496 9309815 -134476640 + L1MC4a LINE L1 6358 6784 -1024 1878 183 81 15 chr12 9309820 9310230 -134476225 - L1MA9 LINE L1 -33 6279 5843 529 216 9 0 chr12 9310235 9310346 -134476109 + L1MC4 LINE L1 6863 6974 -1068 376 280 60 24 chr12 9310510 9310678 -134475777 + LTR41 LTR ERVL 599 772 -1 493 178 14 82 chr12 9310685 9310745 -134475710 + L1MC4 LINE L1 7447 7510 -532 2742 185 58 45 chr12 9310745 9311371 -134475084 + LTR27 LTR ERV1 3 636 0 493 178 14 82 chr12 9311371 9311456 -134474999 + L1MC4 LINE L1 7510 7582 -460 597 237 139 40 chr12 9311459 9311808 -134474647 + L1MC4 LINE L1 7631 8042 0 1277 150 0 0 chr12 9311871 9312058 -134474397 + AluJb SINE Alu 1 187 -125 268 200 30 110 chr12 9312638 9312738 -134473717 + L2 LINE L2 3214 3305 -8 1743 154 15 0 chr12 9312889 9313161 -134473294 - AluJo SINE Alu -25 287 12 26 0 0 0 chr12 9313305 9313331 -134473124 + AT_rich Low_complexity Low_complexity 1 26 0 787 226 85 9 chr12 9313419 9313631 -134472824 + MIR SINE MIR 2 229 -33 325 260 52 58 chr12 9315933 9316087 -134470368 + MIR SINE MIR 71 223 -39 518 205 34 26 chr12 9316650 9316767 -134469688 + MIR SINE MIR 113 230 -32 2185 102 3 3 chr12 9319191 9319484 -134466971 - AluSc SINE Alu -16 293 1 241 291 155 0 chr12 9319836 9319939 -134466516 + MIR SINE MIR 30 148 -60 2177 104 7 0 chr12 9321124 9321411 -134465044 + AluSq SINE Alu 14 302 -11 483 192 77 0 chr12 9321994 9322098 -134464357 + MER81 DNA DNA 3 114 0 23 33 0 0 chr12 9324085 9324115 -134462340 + AT_rich Low_complexity Low_complexity 1 30 0 1820 178 0 3 chr12 9325237 9325541 -134460914 + AluJb SINE Alu 1 303 -9 916 132 0 29 chr12 9325781 9325917 -134460538 + FLAM_C SINE Alu 1 132 -1 1838 167 7 3 chr12 9327976 9328264 -134458191 - AluJb SINE Alu -23 289 1 2432 61 0 10 chr12 9328299 9328594 -134457861 + AluSp SINE Alu 1 292 -21 2183 113 0 3 chr12 9328728 9329019 -134457436 - AluSx SINE Alu -22 290 1 243 229 0 0 chr12 9329531 9329579 -134456876 + MIR SINE MIR 24 71 -137 342 98 0 0 chr12 9331583 9331634 -134454821 + (CTG)n Simple_repeat Simple_repeat 3 53 0 223 364 68 0 chr12 9332138 9332256 -134454199 + L2 LINE L2 3142 3267 -5 2008 123 4 0 chr12 9332667 9332944 -134453511 - AluSx SINE Alu -34 278 1 199 248 158 20 chr12 9333047 9333148 -134453307 + L2 LINE L2 3195 3309 -4 183 220 0 0 chr12 9333337 9333387 -134453068 + A-rich Low_complexity Low_complexity 1 50 0 308 306 159 70 chr12 9334204 9334531 -134451924 - L2 LINE L2 0 3272 2917 1772 156 38 7 chr12 9334543 9334831 -134451624 + AluJb SINE Alu 1 297 -15 31 82 0 0 chr12 9334834 9334907 -134451548 + AT_rich Low_complexity Low_complexity 1 73 0 309 282 29 29 chr12 9335022 9335125 -134451330 + L2 LINE L2 3194 3296 -17 892 290 74 14 chr12 9335211 9335576 -134450879 + L1ME3A LINE L1 5528 5914 -256 472 210 132 30 chr12 9335600 9335767 -134450688 + L1MC5 LINE L1 7742 7925 -36 1787 133 22 7 chr12 9336156 9336509 -134449946 + AluSx SINE Alu 1 357 0 446 291 149 73 chr12 9336617 9337436 -134449019 + L2 LINE L2 1243 1998 -1274 2263 87 3 17 chr12 9337436 9337734 -134448721 - AluSq SINE Alu -19 294 1 2081 119 3 14 chr12 9337734 9338028 -134448427 - AluSx SINE Alu -21 291 1 446 291 149 73 chr12 9338028 9339015 -134447440 + L2 LINE L2 1997 3192 -80 619 244 115 10 chr12 9339065 9339274 -134447181 - MIR SINE MIR -19 243 13 2231 118 3 0 chr12 9339872 9340168 -134446287 - AluSx SINE Alu -15 297 1 1010 237 76 58 chr12 9340246 9340511 -134445944 + MER2 DNA MER2_type 1 275 -70 2542 62 0 7 chr12 9340511 9340816 -134445639 - AluY SINE Alu -8 303 1 1010 237 76 58 chr12 9340816 9340879 -134445576 + MER2 DNA MER2_type 275 335 -10 236 280 21 11 chr12 9341735 9341828 -134444627 + GA-rich Low_complexity Low_complexity 2 95 0 2359 90 0 0 chr12 9342249 9342539 -134443916 + AluSx SINE Alu 1 290 -22 2241 107 0 0 chr12 9343647 9343937 -134442518 - AluSx SINE Alu -22 290 1 1005 181 101 8 chr12 9343988 9344286 -134442169 - MER33 DNA MER1_type 0 324 1 1338 166 21 33 chr12 9344761 9345002 -134441453 - AluJo SINE Alu -22 290 53 2294 89 0 3 chr12 9345002 9345293 -134441162 + AluSq SINE Alu 1 290 -23 260 283 0 0 chr12 9345355 9345415 -134441040 + Tigger3(Golem) DNA MER2_type 1 60 -2969 783 252 0 0 chr12 9345416 9345567 -134440888 + Tigger3(Golem) DNA MER2_type 2879 3029 0 896 178 59 0 chr12 9345716 9345885 -134440570 + AluJo SINE Alu 122 300 -12 249 243 14 14 chr12 9346421 9346495 -134439960 - MIR3 SINE MIR -15 193 120 248 324 49 10 chr12 9347364 9347466 -134438989 - MIR SINE MIR -93 169 64 180 259 136 12 chr12 9347498 9347579 -134438876 + MIR SINE MIR 56 146 -62 37 86 0 0 chr12 9349670 9349763 -134436692 + GC_rich Low_complexity Low_complexity 1 93 0 222 254 0 0 chr12 9349895 9349950 -134436505 + C-rich Low_complexity Low_complexity 1 55 0 200 308 0 0 chr12 9350027 9350079 -134436376 + CT-rich Low_complexity Low_complexity 1 52 0 229 240 13 53 chr12 9350317 9350392 -134436063 + GA-rich Low_complexity Low_complexity 1 72 0 329 224 47 47 chr12 9350725 9350832 -134435623 - L2 LINE L2 -7 3306 3200 202 306 153 8 chr12 9353212 9353336 -134433119 + MIR SINE MIR 94 235 -27 466 297 70 16 chr12 9353724 9353909 -134432546 - MIR SINE MIR -54 208 14 1504 193 57 71 chr12 9354171 9354591 -134431864 + MLT1D LTR MaLR 1 414 -91 1241 128 0 60 chr12 9354618 9354836 -134431619 - AluSg/x SINE Alu -3 307 103 1121 66 0 0 chr12 9354839 9354976 -134431479 - AluSg/x SINE Alu -3 307 171 401 176 0 0 chr12 9354976 9355044 -134431411 - AluS SINE Alu -243 69 2 2360 82 3 7 chr12 9355059 9355365 -134431090 - AluSp SINE Alu 0 313 9 530 129 0 138 chr12 9355372 9355488 -134430967 + MLT1D LTR MaLR 527 626 0 300 182 61 0 chr12 9355496 9355562 -134430893 - MER34 LTR ERV1 0 542 473 284 152 242 30 chr12 9355569 9355635 -134430820 + AluSg/x SINE Alu 159 238 -62 2155 111 17 0 chr12 9355649 9355946 -134430509 + AluSx SINE Alu 1 302 -10 2177 99 3 0 chr12 9355948 9356231 -134430224 + AluSg SINE Alu 1 284 -26 338 169 34 34 chr12 9356254 9356343 -134430112 - MER34 LTR ERV1 -74 468 380 1721 131 17 0 chr12 9356343 9356580 -134429875 + AluSx SINE Alu 1 241 -71 2024 114 135 3 chr12 9356580 9356913 -134429542 + MER51B LTR ERV1 1 377 0 4226 145 34 24 chr12 9356913 9357699 -134428756 + MER51B-int LTR ERV1 1 891 -6925 2101 136 0 7 chr12 9357699 9358000 -134428455 + AluSx SINE Alu 1 299 -13 4226 145 34 24 chr12 9358000 9358575 -134427880 + MER51B-int LTR ERV1 891 1459 -6357 365 133 33 0 chr12 9358587 9358647 -134427808 + AluSx SINE Alu 238 299 -3 754 81 0 118 chr12 9358658 9358794 -134427661 + AluSp/q SINE Alu 194 313 0 988 152 46 78 chr12 9358817 9358903 -134427552 - MER2 DNA MER2_type -135 210 123 1829 162 27 0 chr12 9358903 9359200 -134427255 + AluSx SINE Alu 1 305 -7 988 152 46 78 chr12 9359200 9359330 -134427125 - MER2 DNA MER2_type -222 123 1 1187 216 36 73 chr12 9359343 9359700 -134426755 - MER34 LTR ERV1 -198 344 1 1102 195 35 23 chr12 9359880 9360137 -134426318 - LTR37B LTR ERV1 0 468 209 461 246 66 0 chr12 9360428 9360550 -134425905 + L2 LINE L2 2375 2504 -810 762 300 119 50 chr12 9360551 9360962 -134425493 - L2 LINE L2 0 3313 2932 2584 81 5 48 chr12 9360962 9361031 -134425424 + THE1A LTR MaLR 1 71 -284 2009 98 33 65 chr12 9361031 9361337 -134425118 + AluSq SINE Alu 1 296 -17 2584 81 5 48 chr12 9361337 9361638 -134424817 + THE1A LTR MaLR 71 355 0 11685 84 16 24 chr12 9361638 9361848 -134424607 + THE1A-int LTR MaLR 1 211 -1369 2446 82 7 0 chr12 9361848 9362153 -134424302 + AluSp SINE Alu 1 307 -6 11685 84 16 24 chr12 9362153 9362794 -134423661 + THE1A-int LTR MaLR 211 856 -724 2401 94 0 0 chr12 9362794 9363093 -134423362 + AluSg SINE Alu 1 299 -11 11685 84 16 24 chr12 9363093 9363738 -134422717 + THE1A-int LTR MaLR 856 1487 -93 2499 64 3 0 chr12 9363738 9364035 -134422420 + AluSp SINE Alu 1 298 -15 11685 84 16 24 chr12 9364035 9364129 -134422326 + THE1A-int LTR MaLR 1487 1580 0 2609 92 3 8 chr12 9364129 9364486 -134421969 + THE1A LTR MaLR 1 355 0 762 300 119 50 chr12 9364486 9364535 -134421920 - L2 LINE L2 -380 2933 2819 2609 160 88 25 chr12 9364608 9365224 -134421231 + MER39 LTR ERV1 1 707 0 1092 227 133 0 chr12 9365224 9365524 -134420931 - L2 LINE L2 -538 2776 2437 2204 105 3 7 chr12 9365570 9365865 -134420590 - AluSc SINE Alu -14 295 2 1865 125 3 28 chr12 9365865 9366154 -134420301 - AluSx SINE Alu -30 282 1 1804 119 54 11 chr12 9366241 9366518 -134419937 - AluJb SINE Alu -15 297 9 621 124 0 0 chr12 9366523 9366612 -134419843 + LTR8 LTR ERV1 58 146 -545 805 196 89 124 chr12 9366719 9367178 -134419277 + MER34B LTR ERV1 12 440 -102 615 122 112 0 chr12 9367185 9367283 -134419172 + AluSq/x SINE Alu 2 110 -203 271 323 92 5 chr12 9367794 9367807 -134418648 + L1ME3A LINE L1 5002 5012 -1134 1969 137 0 14 chr12 9367807 9368092 -134418363 + AluSx SINE Alu 1 281 -31 271 323 92 5 chr12 9368092 9368273 -134418182 + L1ME3A LINE L1 5012 5213 -933 * 842 205 0 0 chr12 9368270 9368436 -134418019 + L1M3 LINE L1 5417 5582 -598 769 239 226 56 chr12 9368449 9368534 -134417921 + L1ME3A LINE L1 5201 5270 -900 2246 117 16 0 chr12 9368534 9368841 -134417614 + AluSx SINE Alu 1 312 0 769 239 226 56 chr12 9368841 9369410 -134417045 + L1ME3A LINE L1 5270 5962 -208 23 0 0 0 chr12 9369935 9369958 -134416497 + AT_rich Low_complexity Low_complexity 1 23 0 268 136 0 0 chr12 9369989 9370033 -134416422 - Charlie2 DNA MER1_type -61 2801 2758 2137 82 7 34 chr12 9370033 9370346 -134416109 + AluSq SINE Alu 1 305 0 32 0 0 0 chr12 9370347 9370379 -134416076 + AT_rich Low_complexity Low_complexity 1 32 0 260 283 22 22 chr12 9370394 9370486 -134415969 + MIR3 SINE MIR 112 203 -5 2404 55 41 0 chr12 9370718 9371010 -134415445 + AluY SINE Alu 1 304 -7 202 346 81 58 chr12 9371099 9371359 -134415096 + L2 LINE L2 2938 3203 -69 2282 108 0 7 chr12 9371775 9372082 -134414373 + AluSx SINE Alu 1 305 -7 863 194 123 144 chr12 9372154 9372281 -134414174 + MER110A LTR ERV1 1 129 -360 1501 100 63 48 chr12 9372281 9372411 -134414044 + L1MA2 LINE L1 6025 6152 -152 2125 120 0 3 chr12 9372411 9372703 -134413752 - AluSx SINE Alu -21 291 1 1501 100 63 48 chr12 9372703 9372841 -134413614 + L1MA2 LINE L1 6152 6297 -7 863 194 123 144 chr12 9372841 9372857 -134413598 + MER110A LTR ERV1 129 144 -345 1438 85 0 5 chr12 9372857 9373057 -134413398 - L1PB1 LINE L1 -2 6149 5951 863 194 123 144 chr12 9373057 9373432 -134413023 + MER110A LTR ERV1 144 484 -5 602 206 7 29 chr12 9373814 9373950 -134412505 + AluJb SINE Alu 2 134 -178 2235 112 20 3 chr12 9373975 9374279 -134412176 - AluSx SINE Alu -1 311 3 599 174 60 7 chr12 9374280 9374429 -134412026 - L1MA10 LINE L1 -4 6330 6174 632 253 69 0 chr12 9374459 9374633 -134411822 - MIR SINE MIR -45 217 32 333 246 254 31 chr12 9374645 9374869 -134411586 + Charlie2 DNA MER1_type 1 292 -2490 219 69 0 0 chr12 9374869 9374898 -134411557 + (CA)n Simple_repeat Simple_repeat 1 29 0 333 246 254 31 chr12 9374898 9374933 -134411522 + Charlie2 DNA MER1_type 292 318 -2464 1505 199 87 84 chr12 9374964 9375244 -134411211 + Charlie2 DNA MER1_type 1890 2168 -694 2179 103 34 0 chr12 9375244 9375535 -134410920 + AluSx SINE Alu 1 301 -11 1505 199 87 84 chr12 9375535 9375663 -134410792 + Charlie2 DNA MER1_type 2168 2294 -568 2190 119 3 0 chr12 9375663 9375956 -134410499 + AluSx SINE Alu 1 294 -18 1505 199 87 84 chr12 9375956 9376190 -134410265 + Charlie2 DNA MER1_type 2294 2535 -327 1971 148 14 0 chr12 9376194 9376485 -134409970 + AluJb SINE Alu 1 295 -17 31 0 0 0 chr12 9376522 9376553 -134409902 + AT_rich Low_complexity Low_complexity 1 31 0 650 227 90 64 chr12 9376667 9377074 -134409381 - LTR30 LTR ERV1 0 595 127 744 134 97 143 chr12 9377139 9377181 -134409274 + MLT1B LTR MaLR 1 43 -347 228 31 31 0 chr12 9377181 9377213 -134409242 + (TTTTG)n Simple_repeat Simple_repeat 3 70 0 1517 132 45 66 chr12 9377213 9377501 -134408954 - AluJo SINE Alu -30 282 1 744 134 97 143 chr12 9377501 9377674 -134408781 + MLT1B LTR MaLR 41 207 -183 1525 271 117 22 chr12 9377804 9378317 -134408138 + L1M4 LINE L1 4198 4661 -1485 315 0 0 0 chr12 9378317 9378352 -134408103 + (TG)n Simple_repeat Simple_repeat 1 35 0 1525 271 117 22 chr12 9378352 9378599 -134407856 + L1M4 LINE L1 4661 5044 -1102 1807 146 0 47 chr12 9378599 9378921 -134407534 + AluJb SINE Alu 1 307 -5 1525 271 117 22 chr12 9378921 9378977 -134407478 + L1M4 LINE L1 5044 5093 -1053 510 184 0 0 chr12 9379010 9379097 -134407358 - AluJ/FLAM SINE Alu -223 89 3 424 252 10 0 chr12 9379120 9379223 -134407232 + L1M4 LINE L1 5128 5231 -915 378 194 121 39 chr12 9379280 9379307 -134407148 + L1M4 LINE L1 5259 5282 -889 3991 84 0 18 chr12 9379307 9379593 -134406862 + L1PA14 LINE L1 5623 5896 -265 1539 112 0 66 chr12 9379593 9379835 -134406620 + AluSg/x SINE Alu 82 307 -3 3991 84 0 18 chr12 9379835 9380096 -134406359 + L1PA14 LINE L1 5896 6160 -1 378 194 121 39 chr12 9380096 9380277 -134406178 + L1M4 LINE L1 5282 5485 -686 2251 114 0 7 chr12 9380277 9380584 -134405871 + AluSx SINE Alu 1 305 -7 2388 103 3 0 chr12 9380586 9380896 -134405559 + AluSq SINE Alu 1 311 -2 355 259 39 18 chr12 9380916 9381067 -134405388 - MLT1J1 LTR MaLR -305 141 24 181 324 84 67 chr12 9381096 9381334 -134405121 - L2 LINE L2 -89 3183 2942 207 233 0 0 chr12 9381500 9381543 -134404912 - L2 LINE L2 -562 2752 2710 793 140 0 59 chr12 9381547 9381683 -134404772 - FLAM_C SINE Alu -5 128 1 2627 53 0 0 chr12 9382333 9382633 -134403822 - AluY SINE Alu -11 300 1 571 261 134 90 chr12 9382717 9383230 -134403225 + MER34 LTR ERV1 1 536 -6 455 201 29 148 chr12 9383311 9383520 -134402935 + MER92C LTR ERV1 1 184 -370 307 258 0 0 chr12 9383586 9383652 -134402803 + MER92C LTR ERV1 487 552 -2 336 364 0 0 chr12 9383733 9383854 -134402601 + L2 LINE L2 2594 2714 -600 1984 123 7 17 chr12 9383989 9384281 -134402174 - AluSx SINE Alu -23 289 1 344 323 32 26 chr12 9384321 9384476 -134401979 + L2 LINE L2 3147 3302 -11 2093 129 3 0 chr12 9384857 9385152 -134401303 - AluSx SINE Alu -15 297 2 1883 158 3 0 chr12 9385369 9385681 -134400774 - AluSx SINE Alu 0 313 1 5927 118 11 14 chr12 9385716 9386037 -134400418 - L1PA16 LINE L1 -22 6144 5824 198 0 0 0 chr12 9386037 9386059 -134400396 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2068 117 3 3 chr12 9386059 9386342 -134400113 - AluSq SINE Alu -30 283 1 5927 118 11 14 chr12 9386342 9387047 -134399408 - L1PA16 LINE L1 -340 5826 5119 2013 136 3 0 chr12 9387677 9387971 -134398484 - AluSx SINE Alu -17 295 1 2180 125 0 22 chr12 9388624 9388943 -134397512 + AluSx SINE Alu 1 312 0 1893 118 46 14 chr12 9388985 9389265 -134397190 + AluSx SINE Alu 1 289 -23 2363 78 0 7 chr12 9390048 9390343 -134396112 + AluSx SINE Alu 2 294 -18 21 0 0 0 chr12 9390343 9390364 -134396091 + AT_rich Low_complexity Low_complexity 1 21 0 701 232 39 89 chr12 9390594 9390930 -134395525 + L2 LINE L2 2991 3309 -4 901 162 0 0 chr12 9390984 9391120 -134395335 + AluSg/x SINE Alu 162 297 -15 596 213 32 58 chr12 9391190 9391345 -134395110 + Charlie1b DNA MER1_type 2 152 -371 1678 177 46 33 chr12 9391381 9391549 -134394906 + Charlie1b DNA MER1_type 130 294 -2467 2292 118 0 13 chr12 9391549 9391863 -134394592 - AluSg SINE Alu 0 310 1 1678 177 46 33 chr12 9391863 9392083 -134394372 + Charlie1b DNA MER1_type 294 523 0 2395 95 0 0 chr12 9392160 9392465 -134393990 - AluY SINE Alu -6 305 1 953 120 0 0 chr12 9392750 9392875 -134393580 + AluSq/x SINE Alu 1 125 -187 447 312 158 11 chr12 9392885 9393347 -134393108 + L1M4 LINE L1 2513 3042 -3104 210 339 43 9 chr12 9393553 9393668 -134392787 + MIR SINE MIR 34 152 -56 2523 73 0 0 chr12 9393796 9394098 -134392357 + AluY SINE Alu 1 302 -9 517 248 135 50 chr12 9394442 9394664 -134391791 - MIR SINE MIR -19 243 3 1280 205 13 20 chr12 9394677 9394975 -134391480 + MER33 DNA MER1_type 28 323 -1 348 236 0 0 chr12 9395435 9395524 -134390931 + (TA)n Simple_repeat Simple_repeat 1 89 0 204 179 0 0 chr12 9395584 9395623 -134390832 + (TA)n Simple_repeat Simple_repeat 2 40 0 381 75 0 0 chr12 9395887 9395940 -134390515 + (CA)n Simple_repeat Simple_repeat 2 54 0 2252 112 3 0 chr12 9396702 9396997 -134389458 - AluSp SINE Alu -17 296 1 28 0 0 0 chr12 9397879 9397907 -134388548 + AT_rich Low_complexity Low_complexity 1 28 0 2476 54 40 0 chr12 9398031 9398327 -134388128 - AluY SINE Alu -3 308 1 2300 71 3 3 chr12 9398791 9399105 -134387350 - AluSp SINE Alu 0 314 1 1805 127 0 115 chr12 9399139 9399479 -134386976 - AluSx SINE Alu 0 302 2 2434 102 0 0 chr12 9399827 9400132 -134386323 - AluSq SINE Alu -8 305 1 2351 70 7 17 chr12 9400958 9401258 -134385197 + AluSp SINE Alu 1 297 -16 2230 114 7 0 chr12 9401862 9402168 -134384287 + AluSx SINE Alu 1 308 -4 2089 116 0 0 chr12 9402303 9402580 -134383875 + AluSq SINE Alu 1 277 -36 2575 59 0 0 chr12 9402580 9402885 -134383570 + AluY SINE Alu 4 309 -2 373 293 6 110 chr12 9403927 9404020 -134382435 - MIR SINE MIR -23 185 119 1751 169 16 22 chr12 9404020 9404333 -134382122 + AluJb SINE Alu 1 311 -1 373 293 6 110 chr12 9404333 9404431 -134382024 - MIR SINE MIR -89 119 12 2005 133 27 10 chr12 9404496 9404797 -134381658 + AluSx SINE Alu 1 306 -6 702 138 110 0 chr12 9404847 9404956 -134381499 - AluSg1 SINE Alu -187 122 2 736 204 50 64 chr12 9405222 9405480 -134380975 + MIR SINE MIR 3 254 -8 1034 163 22 11 chr12 9405563 9405747 -134380708 - MER5A DNA MER1_type 0 189 4 2013 144 0 10 chr12 9405761 9406060 -134380395 - AluJb SINE Alu -14 298 3 288 231 138 23 chr12 9406074 9406204 -134380251 - MIR3 SINE MIR -63 145 1 1102 68 0 0 chr12 9407317 9407450 -134379005 + AluSp SINE Alu 1 133 -180 265 336 107 0 chr12 9407915 9408037 -134378418 - L2 LINE L2 -4 3268 3134 594 259 81 0 chr12 9408158 9408332 -134378123 - MIR SINE MIR -8 254 67 2401 101 0 0 chr12 9409171 9409477 -134376978 + AluSg SINE Alu 2 307 -3 184 229 104 0 chr12 9409895 9409943 -134376512 - MIR SINE MIR -6 256 204 360 210 12 0 chr12 9410351 9410432 -134376023 - MER5A DNA MER1_type -84 105 24 1580 249 46 60 chr12 9410487 9410988 -134375467 + MLT1F1 LTR MaLR 74 567 0 1614 168 28 28 chr12 9411076 9411367 -134375088 + AluJo SINE Alu 6 296 -16 2196 118 3 0 chr12 9411367 9411672 -134374783 + AluSx SINE Alu 1 306 -6 292 125 0 0 chr12 9411687 9411735 -134374720 + MIR SINE MIR 183 230 -32 320 208 39 0 chr12 9411782 9411859 -134374596 - MER94 DNA DNA -51 83 4 2027 142 3 0 chr12 9412661 9412949 -134373506 + AluJo SINE Alu 5 293 -19 693 197 0 0 chr12 9413077 9413199 -134373256 - AluJb SINE Alu -189 123 2 901 235 57 63 chr12 9413210 9413363 -134373092 - L1M4 LINE L1 -1159 4987 4835 2296 110 7 0 chr12 9413363 9413671 -134372784 - AluSx SINE Alu -2 310 1 901 235 57 63 chr12 9413671 9413866 -134372589 - L1M4 LINE L1 -1311 4835 4641 312 358 92 34 chr12 9414248 9414699 -134371756 - L2 LINE L2 -1211 2103 1680 2163 130 0 10 chr12 9414699 9414998 -134371457 + AluSx SINE Alu 1 296 -16 312 358 92 34 chr12 9414998 9415422 -134371033 - L2 LINE L2 -1634 1680 1177 408 325 35 66 chr12 9415716 9416033 -134370422 - L1MC/D LINE L1 -2211 5597 5291 879 204 0 0 chr12 9416213 9416365 -134370090 - AluJb SINE Alu -25 287 136 926 104 30 12 chr12 9416365 9416529 -134369926 - L1MA8 LINE L1 0 6291 6125 298 359 0 12 chr12 9417062 9417229 -134369226 + (CCA)n Simple_repeat Simple_repeat 1 165 0 2295 105 7 3 chr12 9417488 9417794 -134368661 - AluSx SINE Alu -5 307 1 2336 79 0 3 chr12 9417794 9418086 -134368369 - AluSc SINE Alu -18 291 1 727 98 11 179 chr12 9418496 9418544 -134367911 - L1MA8 LINE L1 -152 6139 6085 2055 118 0 14 chr12 9418544 9418833 -134367622 - AluSq SINE Alu -1 312 28 727 98 11 179 chr12 9418833 9418968 -134367487 - L1MA8 LINE L1 -206 6085 5987 2132 111 17 0 chr12 9419110 9419398 -134367057 - AluSx SINE Alu -19 293 1 738 144 0 0 chr12 9419625 9419743 -134366712 - L1MB4 LINE L1 -1 6179 6062 2162 121 0 3 chr12 9419753 9420050 -134366405 - AluSg SINE Alu -14 296 1 3374 117 58 4 chr12 9420405 9420902 -134365553 - MER4E-int LTR ERV1 -6234 524 1 2217 93 7 0 chr12 9420902 9421192 -134365263 - MER4E LTR ERV1 0 766 475 716 164 114 7 chr12 9421195 9421335 -134365120 - MLT1C LTR MaLR -1 466 312 * 721 208 35 0 chr12 9421318 9421462 -134364993 - MLT2B2 LTR ERVL -366 149 1 2869 187 36 76 chr12 9421724 9422446 -134364009 + LTR8A LTR ERV1 35 727 0 1444 212 10 27 chr12 9422501 9422798 -134363657 + AluJo SINE Alu 3 294 -18 324 135 0 0 chr12 9423430 9423482 -134362973 - MLT2F LTR ERVL 0 663 612 3962 145 16 86 chr12 9423482 9423791 -134362664 + Tigger3b DNA MER2_type 1 330 -2698 2279 87 3 7 chr12 9423791 9424091 -134362364 - AluSq SINE Alu -14 299 1 3962 145 16 86 chr12 9424091 9424540 -134361915 + Tigger3b DNA MER2_type 330 809 -2219 3400 58 0 2 chr12 9424540 9424955 -134361500 + L1PA7 LINE L1 5729 6154 0 3682 121 14 2 chr12 9424955 9425505 -134360950 + L1PA15 LINE L1 5602 6162 -3 3962 145 16 86 chr12 9425505 9425570 -134360885 + Tigger3b DNA MER2_type 700 768 -463 2719 151 36 2 chr12 9426864 9427313 -134359142 + Tigger3b DNA MER2_type 765 1228 -4 1146 216 39 67 chr12 9427317 9427329 -134359126 - MLT2C1 LTR ERVL -51 346 335 1658 173 4 11 chr12 9427329 9427601 -134358854 + AluJo SINE Alu 9 278 -34 1146 216 39 67 chr12 9427601 9427944 -134358511 - MLT2C1 LTR ERVL -62 335 1 1214 84 11 47 chr12 9428087 9428277 -134358178 + AluSq SINE Alu 127 309 -4 236 211 123 13 chr12 9428591 9428708 -134357747 + L3b LINE CR1 1292 1470 -113 881 291 79 35 chr12 9429919 9430324 -134356131 - HsTC2a DNA Tc2 -242 502 80 2138 126 7 0 chr12 9430399 9430708 -134355747 + AluSx SINE Alu 2 312 0 520 260 120 73 chr12 9430785 9431253 -134355202 + MLT1H1 LTR MaLR 31 555 0 2243 106 3 10 chr12 9432421 9432722 -134353733 - AluSx SINE Alu -13 299 1 794 238 110 98 chr12 9432954 9433487 -134352968 + MLT1H1 LTR MaLR 11 555 0 336 171 14 0 chr12 9433498 9433568 -134352887 - HsTC2a DNA Tc2 -670 74 4 638 353 77 45 chr12 9433585 9433727 -134352728 + L1ME3A LINE L1 5326 5462 -708 2199 123 0 7 chr12 9433727 9434028 -134352427 + AluSx SINE Alu 1 299 -13 638 353 77 45 chr12 9434028 9434395 -134352060 + L1ME3A LINE L1 5462 5851 -319 717 170 23 23 chr12 9434414 9434600 -134351855 + L1MCa LINE L1 1 157 -5888 1586 189 102 5 chr12 9434619 9435052 -134351403 + L1MCa LINE L1 719 1193 -4852 * 3165 58 40 9 chr12 9435042 9435489 -134350966 + L1PA10 LINE L1 5654 6114 -54 3705 204 141 16 chr12 9435493 9436202 -134350253 + L1MCa LINE L1 1242 1861 -4703 1655 223 3 0 chr12 9436202 9436498 -134349957 - AluJo SINE Alu -15 297 1 3705 204 141 16 chr12 9436498 9437677 -134348778 + L1MCa LINE L1 1861 3369 -3195 2265 225 55 2 chr12 9437686 9438287 -134348168 + L1MCa LINE L1 4032 4664 -1900 189 0 0 0 chr12 9438995 9439016 -134347439 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 4609 124 42 129 chr12 9439756 9440985 -134345470 + MER52C LTR ERV1 59 1180 -98 873 275 42 4 chr12 9441994 9442236 -134344219 + MIR SINE MIR 4 246 -16 3124 148 66 70 chr12 9442316 9442911 -134343544 + MER6 DNA MER2_type 1 594 -271 3976 121 24 0 chr12 9442911 9443499 -134342956 + LTR26 LTR ERV1 2 603 0 3124 148 66 70 chr12 9443499 9443657 -134342798 + MER6 DNA MER2_type 594 751 -114 35 0 0 0 chr12 9443662 9443697 -134342758 + AT_rich Low_complexity Low_complexity 1 35 0 968 172 29 25 chr12 9443785 9444023 -134342432 - L1MA4 LINE L1 -6 6294 6056 561 186 0 0 chr12 9444025 9444127 -134342328 + MER6 DNA MER2_type 763 864 -1 1343 188 8 0 chr12 9444130 9444364 -134342091 + MER46A DNA MER2_type 1 236 0 245 323 0 16 chr12 9444436 9444498 -134341957 - MIR SINE MIR -112 96 36 216 0 0 0 chr12 9445909 9445933 -134340522 + (TG)n Simple_repeat Simple_repeat 2 25 0 1280 169 4 34 chr12 9445961 9446197 -134340258 - AluJo SINE Alu -83 229 1 1845 140 3 3 chr12 9446574 9446867 -134339588 + L1PB4 LINE L1 5863 6155 -1 191 102 34 34 chr12 9447555 9447614 -134338841 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 257 270 29 29 chr12 9447766 9447903 -134338552 + (CATATA)n Simple_repeat Simple_repeat 3 139 0 23 54 0 0 chr12 9448996 9449033 -134337422 + AT_rich Low_complexity Low_complexity 1 37 0 1666 170 21 18 chr12 9449046 9449329 -134337126 - AluJb SINE Alu -28 284 1 2443 66 20 0 chr12 9449341 9449526 -134336929 - AluY SINE Alu -4 307 112 225 0 0 0 chr12 9449526 9449551 -134336904 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2443 66 20 0 chr12 9449551 9449666 -134336789 - AluY SINE Alu -199 112 1 211 242 30 45 chr12 9449761 9449827 -134336628 - MER5B DNA MER1_type -1 177 113 1186 128 6 11 chr12 9449827 9450007 -134336448 + AluSg/x SINE Alu 132 310 0 206 317 40 50 chr12 9450007 9450108 -134336347 - MER5A DNA MER1_type -52 137 38 772 189 109 144 chr12 9450456 9450769 -134335686 - AluJo SINE Alu 0 302 1 920 157 0 0 chr12 9450876 9451010 -134335445 + AluJo SINE Alu 1 134 -178 288 200 0 0 chr12 9451239 9451294 -134335161 + LTR29 LTR ERV1 1 55 -567 379 147 52 7 chr12 9451892 9452028 -134334427 + (TA)n Simple_repeat Simple_repeat 2 143 0 223 101 63 25 chr12 9452044 9452123 -134334332 + (TTATA)n Simple_repeat Simple_repeat 4 85 0 640 165 0 0 chr12 9452417 9452514 -134333941 - AluJ/FLAM SINE Alu -215 97 1 243 429 34 0 chr12 9453071 9453218 -134333237 + L2 LINE L2 3116 3267 -5 447 235 220 0 chr12 9453499 9453631 -134332824 + MIR SINE MIR 17 177 -85 214 147 0 0 chr12 9454488 9454522 -134331933 + (C)n Simple_repeat Simple_repeat 1 34 0 4362 180 140 145 chr12 9454549 9456014 -134330441 + MER52A LTR ERV1 324 1753 -2 22 0 0 0 chr12 9456336 9456358 -134330097 + AT_rich Low_complexity Low_complexity 1 22 0 204 312 52 26 chr12 9459601 9459678 -134326777 + L2 LINE L2 3169 3247 -25 302 266 29 92 chr12 9460048 9460170 -134326285 - MER5A DNA MER1_type 0 189 80 2330 71 10 7 chr12 9460170 9460464 -134325991 - AluSp SINE Alu -18 295 1 302 266 29 92 chr12 9460464 9460514 -134325941 - MER5A DNA MER1_type -109 80 28 24 32 0 0 chr12 9460760 9460791 -134325664 + AT_rich Low_complexity Low_complexity 1 31 0 2020 155 0 3 chr12 9460797 9461132 -134325323 - L1PA13 LINE L1 -19 6144 5811 186 347 0 14 chr12 9461376 9461448 -134325007 + L3b LINE CR1 1296 1366 -217 2171 142 0 0 chr12 9463150 9463452 -134323003 + AluSx SINE Alu 1 302 -10 273 264 75 27 chr12 9464727 9464962 -134321493 + L1MC/D LINE L1 5665 5902 -268 868 231 36 10 chr12 9465575 9465770 -134320685 - MIR SINE MIR -2 260 61 307 148 0 19 chr12 9465806 9465860 -134320595 + Tigger5 DNA MER2_type 2 54 -2269 * 338 174 14 14 chr12 9465833 9465902 -134320553 + Tigger5 DNA MER2_type 2255 2323 0 4437 75 2 0 chr12 9467418 9467995 -134318460 - L1PA8A LINE L1 -9 6122 5545 264 193 148 11 chr12 9468486 9468574 -134317881 + MIR SINE MIR 150 249 -13 21 57 0 0 chr12 9469339 9469374 -134317081 + AT_rich Low_complexity Low_complexity 1 35 0 341 313 90 43 chr12 9470471 9470727 -134315728 + L1ME2 LINE L1 5286 5553 -2489 4703 262 32 37 chr12 9470787 9472201 -134314254 + L1M3b LINE L1 11 1418 -4863 1983 21 4 0 chr12 9472198 9472435 -134314020 - L1P2 LINE L1 -435 5720 5483 * 2599 35 0 0 chr12 9472435 9472745 -134313710 + L1PA5 LINE L1 5842 6152 -2 9997 215 50 32 chr12 9472783 9475605 -134310850 + L1MA7 LINE L1 2267 5172 -2393 474 239 128 0 chr12 9475605 9475714 -134310741 + FLAM_A SINE Alu 1 123 -10 9997 215 50 32 chr12 9475714 9476589 -134309866 + L1MA7 LINE L1 5172 6030 -1535 2156 184 70 15 chr12 9476592 9477119 -134309336 + L1MA7 LINE L1 7145 7700 -10 356 306 96 33 chr12 9477175 9477446 -134309009 + L1ME2 LINE L1 5605 5892 -272 444 297 22 6 chr12 9477682 9477864 -134308591 + HAL1b LINE L1 606 790 -558 2273 114 0 0 chr12 9478803 9479102 -134307353 + AluSx SINE Alu 1 299 -13 22 56 0 0 chr12 9479158 9479194 -134307261 + AT_rich Low_complexity Low_complexity 1 36 0 1378 234 48 47 chr12 9481368 9481995 -134304460 + L1M3de LINE L1 587 1184 -5469 3494 162 36 18 chr12 9482001 9482724 -134303731 + L1MA9 LINE L1 5538 6273 -39 180 306 0 0 chr12 9483057 9483106 -134303349 - L2 LINE L2 -209 3063 3015 427 150 88 71 chr12 9483123 9483276 -134303179 + FLAM_C SINE Alu 1 155 0 672 173 35 126 chr12 9483634 9483889 -134302566 + MER63 DNA MER1_type 5 236 -825 309 219 0 0 chr12 9483933 9483997 -134302458 - MER63 DNA MER1_type -534 526 463 250 174 0 0 chr12 9483969 9484015 -134302440 + MER63 DNA MER1_type 244 289 -772 * 22 0 0 0 chr12 9484289 9484311 -134302144 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 9484456 9484478 -134301977 + AT_rich Low_complexity Low_complexity 1 22 0 2916 6 0 0 chr12 9485087 9485403 -134301052 - AluYb8 SINE Alu -2 316 1 403 240 25 58 chr12 9486167 9486288 -134300167 + L2 LINE L2 3195 3311 -2 25 65 0 0 chr12 9486468 9486514 -134299941 + AT_rich Low_complexity Low_complexity 1 46 0 2220 110 10 0 chr12 9486974 9487275 -134299180 - AluSx SINE Alu -8 304 1 180 0 0 0 chr12 9487775 9487795 -134298660 + (TA)n Simple_repeat Simple_repeat 1 20 0 349 291 49 21 chr12 9488556 9488720 -134297735 + MIR SINE MIR 36 206 -2 249 33 0 0 chr12 9489772 9489802 -134296653 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 769 169 0 0 chr12 9489805 9489923 -134296532 - FLAM_C SINE Alu -15 118 1 1609 64 3 158 chr12 9490094 9490405 -134296050 + L1PB1 LINE L1 5885 6147 -4 1789 156 3 3 chr12 9491571 9491860 -134294595 - AluJb SINE Alu -23 289 1 200 236 55 18 chr12 9492126 9492181 -134294274 + L2 LINE L2 3215 3271 -1 471 254 16 8 chr12 9492559 9492685 -134293770 - MIR SINE MIR -48 214 88 3412 154 16 2 chr12 9492772 9493382 -134293073 - L1MB2 LINE L1 -21 6150 5532 655 281 45 23 chr12 9493803 9494024 -134292431 - L2 LINE L2 -4 3309 3084 1058 157 0 5 chr12 9496225 9496416 -134290039 - L1MA4A LINE L1 -14 6289 6100 208 77 51 0 chr12 9497297 9497336 -134289119 + A-rich Low_complexity Low_complexity 1 41 0 2310 71 0 3 chr12 9497444 9497770 -134288685 - AluY SINE Alu 0 325 1 826 83 15 8 chr12 9499752 9499885 -134286570 + L1MA2 LINE L1 6075 6208 -96 559 105 0 0 chr12 9499973 9500059 -134286396 + L1MA3 LINE L1 6220 6305 0 25 51 0 0 chr12 9500431 9500470 -134285985 + AT_rich Low_complexity Low_complexity 1 39 0 467 306 81 47 chr12 9500502 9500760 -134285695 - L2 LINE L2 -1 3312 3046 * 755 312 80 13 chr12 9500739 9501040 -134285415 - L2 LINE L2 -644 2670 2350 207 100 0 0 chr12 9503302 9503332 -134283123 + (CATA)n Simple_repeat Simple_repeat 2 31 0 1368 226 73 90 chr12 9503632 9504658 -134281797 - Charlie2 DNA MER1_type -2 2860 1852 573 277 142 12 chr12 9504657 9504910 -134281545 - Charlie2 DNA MER1_type -2458 324 39 * 219 167 0 0 chr12 9506004 9506046 -134280409 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 261 374 41 0 chr12 9506052 9506199 -134280256 - L2 LINE L2 0 3313 3161 372 389 0 19 chr12 9506314 9506476 -134279979 - L2 LINE L2 -181 3091 2933 274 338 76 59 chr12 9506587 9507045 -134279410 - L2 LINE L2 -582 2732 2267 1056 173 54 29 chr12 9507048 9507326 -134279129 - MER33 DNA MER1_type 0 324 40 332 277 72 12 chr12 9507343 9507507 -134278948 - MER112 DNA MER1_type -7 253 80 944 303 76 17 chr12 9507507 9507983 -134278472 + MLT1J LTR MaLR 1 504 -7 289 340 88 26 chr12 9508160 9508466 -134277989 - L2 LINE L2 -1053 2261 1937 191 327 119 50 chr12 9508720 9509182 -134277273 - L2 LINE L2 -1337 1977 1484 287 248 32 61 chr12 9509273 9509404 -134277051 + MIR SINE MIR 39 176 -79 288 0 0 0 chr12 9510197 9510229 -134276226 + (TG)n Simple_repeat Simple_repeat 2 33 0 1718 188 0 17 chr12 9510230 9510528 -134275927 - AluJo SINE Alu -17 295 3 2072 101 0 0 chr12 9510637 9510914 -134275541 + AluSc SINE Alu 33 309 0 592 212 117 9 chr12 9512018 9512249 -134274206 - Charlie2a DNA MER1_type -1393 1469 1214 24 91 0 0 chr12 9512369 9512435 -134274020 + AT_rich Low_complexity Low_complexity 1 66 0 2800 155 60 6 chr12 9512510 9513026 -134273429 - MER44D DNA MER2_type -1 604 6 442 203 14 34 chr12 9513201 9513306 -134273149 + L1MC5 LINE L1 6774 6880 -1162 1766 71 8 0 chr12 9513306 9513544 -134272911 - MER75B DNA T2_type 0 243 4 442 203 14 34 chr12 9513544 9513579 -134272876 + L1MC5 LINE L1 6880 6987 -1055 4858 131 125 62 chr12 9513583 9514775 -134271680 + MER52C LTR ERV1 1 1267 -11 271 197 79 0 chr12 9514889 9514965 -134271490 - L1MA8 LINE L1 -5 6286 6205 2224 102 0 0 chr12 9515071 9515377 -134271078 - AluSg SINE Alu 0 306 1 188 88 59 0 chr12 9518390 9518424 -134268031 + CT-rich Low_complexity Low_complexity 3 38 0 22 0 0 0 chr12 9518564 9518586 -134267869 + AT_rich Low_complexity Low_complexity 1 22 0 1957 64 98 4 chr12 9518924 9519190 -134267265 - AluY SINE Alu -18 293 3 4134 193 37 15 chr12 9519192 9520633 -134265822 - L1MB2 LINE L1 -47 6124 4645 21 0 0 0 chr12 9520686 9520707 -134265748 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 9520756 9520792 -134265663 + AT_rich Low_complexity Low_complexity 1 36 0 460 217 83 50 chr12 9520919 9521039 -134265416 + L2 LINE L2 3189 3312 -1 207 208 21 10 chr12 9521050 9521146 -134265309 + (TA)n Simple_repeat Simple_repeat 2 98 0 343 305 86 94 chr12 9521299 9521660 -134264795 + MLT1L LTR MaLR 154 521 0 323 348 136 24 chr12 9521760 9522047 -134264408 - L2 LINE L2 -462 2852 2534 279 253 101 0 chr12 9522214 9522293 -134264162 - MER104 DNA Tc2 -88 92 6 293 311 90 0 chr12 9522306 9522428 -134264027 - MIR SINE MIR -6 256 124 268 290 21 21 chr12 9522492 9522585 -134263870 - L2 LINE L2 -965 2349 2257 555 335 133 31 chr12 9522693 9523144 -134263311 - L2 LINE L2 0 3313 2817 321 379 109 11 chr12 9523123 9523408 -134263047 - L2 LINE L2 -1047 2267 1955 * 1858 158 32 6 chr12 9523753 9524101 -134262354 - L1MB1 LINE L1 -1 6403 6047 275 203 14 0 chr12 9525873 9525947 -134260508 + (TA)n Simple_repeat Simple_repeat 2 76 0 10901 208 41 9 chr12 9525954 9529094 -134257361 - L1MB1 LINE L1 -594 5810 2561 3071 65 29 2 chr12 9529096 9529511 -134256944 - LTR19A LTR ERV1 0 486 61 2489 88 0 0 chr12 9529511 9529840 -134256615 - LTR19A-int LTR ERV1 -132 5454 5126 * 3877 80 4 0 chr12 9529835 9530349 -134256106 - LTR19A-int LTR ERV1 -1205 4381 3866 23462 75 40 38 chr12 9530377 9533862 -134252593 - LTR19A-int LTR ERV1 -2091 3495 1 3605 63 25 0 chr12 9533862 9534336 -134252119 - LTR19A LTR ERV1 0 486 1 2895 255 90 9 chr12 9534336 9536047 -134250408 - L1MB1 LINE L1 -3819 2563 794 461 287 60 27 chr12 9536039 9536189 -134250266 - L1MB1 LINE L1 -5380 923 769 * 600 268 38 6 chr12 9537274 9537431 -134249024 - MIR SINE MIR -48 214 53 1473 321 43 22 chr12 9537809 9538301 -134248154 - MLT2E LTR ERVL -28 600 99 239 349 12 0 chr12 9538803 9538889 -134247566 - MIR SINE MIR -12 250 164 482 296 16 53 chr12 9538948 9539137 -134247318 - MER5A DNA MER1_type 0 189 8 363 348 75 40 chr12 9539896 9540425 -134246030 - L2 LINE L2 -1980 1334 776 2749 165 12 12 chr12 9540425 9540911 -134245544 - MER66B LTR ERV1 0 486 1 363 348 75 40 chr12 9540911 9541030 -134245425 - L2 LINE L2 -2538 776 663 35 71 0 0 chr12 9541105 9541175 -134245280 + AT_rich Low_complexity Low_complexity 1 70 0 2027 145 3 7 chr12 9541319 9541629 -134244826 + AluJo SINE Alu 1 309 -3 222 330 97 0 chr12 9542205 9542308 -134244147 - L2 LINE L2 0 3313 3201 191 363 66 0 chr12 9542746 9542837 -134243618 - L2 LINE L2 -820 2494 2398 2330 79 10 0 chr12 9542880 9543172 -134243283 - AluSp SINE Alu -18 295 1 2631 20 0 7 chr12 9543322 9543626 -134242829 + AluY SINE Alu 1 302 -9 199 284 181 39 chr12 9543678 9543910 -134242545 - L2 LINE L2 -1149 2165 1901 1044 219 134 42 chr12 9544571 9545161 -134241294 - MER69 DNA AcHobo -38 2488 1845 526 327 112 49 chr12 9545388 9545881 -134240574 - L2 LINE L2 -484 2830 2307 881 175 92 0 chr12 9545888 9546105 -134240350 + L1MA7 LINE L1 6053 6289 -2 210 204 91 0 chr12 9546212 9546256 -134240199 - L2 LINE L2 -2683 631 584 2273 64 3 3 chr12 9546604 9546911 -134239544 + AluY SINE Alu 1 307 0 187 203 27 0 chr12 9547327 9547401 -134239054 + (TA)n Simple_repeat Simple_repeat 1 76 0 472 273 77 67 chr12 9548294 9548503 -134237952 + MIR SINE MIR 49 259 -3 34 55 0 0 chr12 9548651 9548706 -134237749 + AT_rich Low_complexity Low_complexity 1 55 0 1927 167 117 65 chr12 9549264 9549744 -134236711 - MLT1D LTR MaLR 0 505 1 381 240 57 91 chr12 9549757 9549932 -134236523 - MLT1D-int LTR MaLR -15 1356 1188 354 310 26 9 chr12 9549923 9550036 -134236419 - MLT1D-int LTR MaLR -296 1075 961 * 775 313 13 5 chr12 9550143 9550367 -134236088 - MLT1D-int LTR MaLR -485 886 661 744 230 7 109 chr12 9550427 9550701 -134235754 - MLT1D-int LTR MaLR -707 664 419 * 2018 259 99 8 chr12 9550691 9551587 -134234868 - L1M4 LINE L1 -2552 3594 2617 2277 60 0 0 chr12 9551639 9551968 -134234487 - AluY SINE Alu 0 329 1 12243 150 8 3 chr12 9556829 9560650 -134225805 - L1PA11 LINE L1 0 6174 2205 190 367 0 0 chr12 9560659 9560719 -134225736 + L2 LINE L2 3254 3313 0 473 334 113 38 chr12 9561176 9561840 -134224615 - L2 LINE L2 0 3313 2589 217 397 66 0 chr12 9562193 9562329 -134224126 + MIR3 SINE MIR 34 178 -30 2453 58 0 16 chr12 9563060 9563391 -134223064 + AluY SINE Alu 1 311 0 300 262 54 102 chr12 9564943 9565164 -134221291 - MLT1J2 LTR MaLR 0 450 237 265 167 361 0 chr12 9565190 9565262 -134221193 - MLT1J2 LTR MaLR -283 167 70 282 259 38 84 chr12 9565736 9565867 -134220588 + MIR SINE MIR 67 191 -71 26 98 0 0 chr12 9566437 9566519 -134219936 + AT_rich Low_complexity Low_complexity 1 82 0 318 35 0 86 chr12 9567136 9567194 -134219261 - L1PA16 LINE L1 -2 6164 6112 234 256 0 0 chr12 9567836 9567914 -134218541 + GA-rich Low_complexity Low_complexity 3 80 0 278 308 0 0 chr12 9569973 9570082 -134216373 + GA-rich Low_complexity Low_complexity 1 109 0 210 71 0 0 chr12 9570861 9570889 -134215566 + (A)n Simple_repeat Simple_repeat 1 28 0 300 266 75 12 chr12 9571095 9571268 -134215187 + MER113 DNA MER1_type? 3 186 -335 2116 285 81 19 chr12 9571402 9572510 -134213945 + L2 LINE L2 2134 3310 -3 1732 170 52 0 chr12 9572711 9572999 -134213456 + AluSx SINE Alu 1 303 -9 202 275 0 29 chr12 9578862 9578931 -134207524 + (TA)n Simple_repeat Simple_repeat 2 68 0 2299 99 0 13 chr12 9579243 9579557 -134206898 + AluSg SINE Alu 1 310 0 189 0 0 0 chr12 9579963 9579984 -134206471 + (A)n Simple_repeat Simple_repeat 1 21 0 467 131 75 0 chr12 9581732 9581839 -134204616 + L1MDa LINE L1 2350 2464 -4076 1141 256 68 9 chr12 9581844 9582168 -134204287 + L1MD2 LINE L1 5723 6065 -294 287 304 44 59 chr12 9582217 9582490 -134203965 - L1M4 LINE L1 -1147 4999 4731 2493 141 35 2 chr12 9582546 9582949 -134203506 + MSTA LTR MaLR 13 428 0 11574 127 22 22 chr12 9583400 9585277 -134201178 + L1P LINE L1 65 1941 -4205 5596 49 11 7 chr12 9585314 9586026 -134200429 + L1PA6 LINE L1 5440 6154 0 1659 194 67 58 chr12 9586521 9586984 -134199471 + MLT1C LTR MaLR 1 467 0 2274 128 0 0 chr12 9587136 9587442 -134199013 + AluSc SINE Alu 1 306 -3 644 203 0 38 chr12 9587485 9587618 -134198837 + FLAM_A SINE Alu 1 128 -5 2431 57 0 10 chr12 9587809 9588109 -134198346 + AluY SINE Alu 1 297 -14 1803 119 60 0 chr12 9588765 9589073 -134197382 - AluSq SINE Alu 0 324 1 668 229 127 82 chr12 9589107 9589548 -134196907 - LTR37B LTR ERV1 -1 467 7 5735 120 8 4 chr12 9589573 9591025 -134195430 - L1PA15 LINE L1 -4 6161 4679 2546 189 28 6 chr12 9591030 9591527 -134194928 - L1PA15 LINE L1 -1864 4282 3775 3011 107 7 13 chr12 9591550 9591649 -134194806 - L1PB1 LINE L1 -2 6149 6051 2266 102 102 3 chr12 9591649 9591992 -134194463 - MER51B LTR ERV1 0 377 1 3011 107 7 13 chr12 9591992 9592350 -134194105 - L1PB1 LINE L1 -100 6051 5695 2611 231 25 6 chr12 9592358 9592436 -134194019 + L1 LINE L1 4613 4688 -1458 260 49 49 0 chr12 9592436 9592477 -134193978 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2611 231 25 6 chr12 9592477 9593030 -134193425 + L1 LINE L1 4688 5256 -890 * 5594 228 18 1 chr12 9593023 9593628 -134192827 - L1PA15 LINE L1 -2358 3788 3195 189 0 0 0 chr12 9593628 9593649 -134192806 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 5594 228 18 1 chr12 9593649 9594384 -134192071 - L1PA15 LINE L1 -2951 3195 2425 385 226 46 109 chr12 9594457 9594925 -134191530 - MER31-int LTR ERV1 -1172 5059 3637 377 196 20 85 chr12 9595118 9595277 -134191178 + L1 LINE L1 5188 5336 -810 4217 202 11 29 chr12 9595712 9597383 -134189072 + L1MB7 LINE L1 4516 6155 -29 2797 256 60 21 chr12 9597752 9599013 -134187442 + L1M3a LINE L1 305 1390 -4575 401 324 60 29 chr12 9599020 9599301 -134187154 + L1ME LINE L1 5477 5766 -355 513 315 75 29 chr12 9599854 9600288 -134186167 + L1ME LINE L1 5365 5823 -298 228 182 23 0 chr12 9600568 9600612 -134185843 - U7 snRNA snRNA -8 55 11 21 71 0 0 chr12 9600741 9600783 -134185672 + AT_rich Low_complexity Low_complexity 1 42 0 349 336 17 8 chr12 9601007 9601126 -134185329 + L2 LINE L2 3174 3293 -20 36 40 0 0 chr12 9603888 9603938 -134182517 + AT_rich Low_complexity Low_complexity 1 50 0 299 307 87 0 chr12 9604679 9604806 -134181649 + MIR SINE MIR 110 247 -15 1418 172 40 30 chr12 9605074 9605371 -134181084 - AluJo SINE Alu -12 300 1 2560 53 0 0 chr12 9606544 9606847 -134179608 + AluY SINE Alu 1 303 -8 23 0 0 0 chr12 9608239 9608262 -134178193 + AT_rich Low_complexity Low_complexity 1 23 0 1398 183 49 28 chr12 9611830 9612114 -134174341 - AluJo SINE Alu -22 290 1 391 105 89 0 chr12 9612191 9612455 -134174000 + (TA)n Simple_repeat Simple_repeat 1 287 0 388 92 46 58 chr12 9612455 9612629 -134173826 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 228 109 31 16 chr12 9612670 9612734 -134173721 + (TTATA)n Simple_repeat Simple_repeat 2 66 0 26 0 0 0 chr12 9612747 9612773 -134173682 + AT_rich Low_complexity Low_complexity 1 26 0 225 117 67 0 chr12 9612780 9612840 -134173615 + (TA)n Simple_repeat Simple_repeat 2 65 0 42 52 0 31 chr12 9614304 9614400 -134172055 + AT_rich Low_complexity Low_complexity 1 93 0 1504 169 4 40 chr12 9614431 9614709 -134171746 + AluJo SINE Alu 1 268 -44 289 122 0 92 chr12 9614722 9614820 -134171635 + (GGGAA)n Simple_repeat Simple_repeat 3 91 0 28 0 0 0 chr12 9614928 9614956 -134171499 + AT_rich Low_complexity Low_complexity 1 28 0 699 191 40 10 chr12 9614956 9615155 -134171300 - L1MA4 LINE L1 -11 6289 6085 367 207 200 41 chr12 9615177 9615322 -134171133 - MIR SINE MIR -71 191 24 2619 36 0 0 chr12 9615421 9615722 -134170733 + AluY SINE Alu 1 301 -10 34 0 0 0 chr12 9618667 9618701 -134167754 + AT_rich Low_complexity Low_complexity 1 34 0 29 28 0 0 chr12 9618763 9618799 -134167656 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr12 9619453 9619475 -134166980 + AT_rich Low_complexity Low_complexity 1 22 0 5376 108 15 4 chr12 9619481 9621234 -134165221 - L1PA12 LINE L1 -7 6161 4441 10696 203 74 22 chr12 9621234 9623174 -134163281 - L1PA13 LINE L1 -1580 5217 3378 3343 41 5 0 chr12 9623174 9623585 -134162870 - L1PA7 LINE L1 -1 6153 5741 10696 203 74 22 chr12 9623585 9624079 -134162376 - L1PA13 LINE L1 -3419 3378 2911 2288 114 7 0 chr12 9624079 9624385 -134162070 + AluSc SINE Alu 1 308 -1 10696 203 74 22 chr12 9624385 9626058 -134160397 - L1PA13 LINE L1 -3886 2911 828 1774 146 46 7 chr12 9626496 9626776 -134159679 + AluJo SINE Alu 1 291 -21 757 272 16 4 chr12 9626776 9627022 -134159433 - L1MA9 LINE L1 -39 6273 6025 263 263 44 13 chr12 9628256 9628354 -134158101 - MIR SINE MIR -66 142 56 5773 35 0 4 chr12 9629266 9629974 -134156481 - L1P LINE L1 -887 5259 4555 718 0 0 0 chr12 9629974 9630039 -134156416 + L1PA2 LINE L1 6064 6165 0 199 0 0 0 chr12 9630039 9630061 -134156394 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 243 277 151 54 chr12 9630098 9630264 -134156191 - MIR SINE MIR -27 235 54 249 324 67 9 chr12 9630763 9630868 -134155587 - L2 LINE L2 0 3313 3203 4148 168 19 1 chr12 9631351 9632070 -134154385 - MER44D DNA MER2_type 0 605 2 2078 211 65 36 chr12 9632611 9633138 -134153317 - MLT1F LTR MaLR 0 542 1 279 244 103 114 chr12 9633143 9633487 -134152968 - MLT1F-int LTR MaLR -4 1731 1023 22563 178 20 12 chr12 9633709 9640176 -134146279 - L1PA11 LINE L1 -2 7610 12 260 358 8 25 chr12 9640830 9640950 -134145505 - MIR3 SINE MIR -36 172 55 280 326 23 0 chr12 9641949 9642035 -134144420 + MIR3 SINE MIR 93 180 -28 721 195 58 49 chr12 9642602 9642807 -134143648 + L1PA12 LINE L1 142 348 -7233 22 0 0 0 chr12 9645403 9645425 -134141030 + AT_rich Low_complexity Low_complexity 1 22 0 1978 65 43 47 chr12 9646715 9646991 -134139464 - AluY SINE Alu -13 298 24 1892 89 8 0 chr12 9647160 9647419 -134139036 + L1PA11 LINE L1 5911 6171 -3 228 258 191 11 chr12 9647732 9647821 -134138634 - MIR SINE MIR -67 141 37 1917 132 14 0 chr12 9647923 9648212 -134138243 + AluSx SINE Alu 1 293 -19 252 269 70 58 chr12 9648840 9649024 -134137431 - MIR SINE MIR 0 262 1 2402 39 0 4 chr12 9649253 9649533 -134136922 - AluY SINE Alu -13 298 20 2182 112 43 125 chr12 9650308 9650771 -134135684 - MSTC LTR MaLR 0 428 4 389 296 44 7 chr12 9650772 9650907 -134135548 - MIR SINE MIR -64 198 59 276 100 0 0 chr12 9651410 9651450 -134135005 + (A)n Simple_repeat Simple_repeat 1 40 0 1605 174 14 18 chr12 9651930 9652211 -134134244 + AluJo SINE Alu 1 280 -32 1578 87 48 0 chr12 9653017 9653246 -134133209 + L1PA10 LINE L1 5918 6157 -11 213 39 0 0 chr12 9653257 9653283 -134133172 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 239 139 0 0 chr12 9654145 9654181 -134132274 - U2 snRNA snRNA -152 36 1 279 54 0 0 chr12 9654667 9654704 -134131751 + (CAA)n Simple_repeat Simple_repeat 3 39 0 585 245 37 18 chr12 9655844 9656007 -134130448 - MER20 DNA MER1_type 0 219 54 320 242 61 0 chr12 9657432 9657531 -134128924 - L1M4 LINE L1 -3667 2479 2375 278 317 58 19 chr12 9657599 9657703 -134128752 - MER5A DNA MER1_type -46 143 36 1420 131 0 5 chr12 9659686 9659919 -134126536 + AluSg/x SINE Alu 86 317 0 565 240 129 0 chr12 9660933 9661104 -134125351 + MER58A DNA MER1_type 29 221 -3 385 308 208 23 chr12 9661461 9661893 -134124562 - L2 LINE L2 -2235 1079 568 736 142 154 0 chr12 9661893 9662062 -134124393 + L1MA8 LINE L1 6076 6270 -21 550 330 99 36 chr12 9662111 9662444 -134124011 - L2 LINE L2 -2736 578 225 1430 273 31 69 chr12 9662507 9663187 -134123268 + L1M3d LINE L1 2 512 -5379 30 0 0 0 chr12 9664203 9664233 -134122222 + AT_rich Low_complexity Low_complexity 1 30 0 1870 158 0 3 chr12 9664261 9664552 -134121903 + AluJb SINE Alu 1 290 -22 221 323 62 0 chr12 9664632 9664749 -134121706 + MIR SINE MIR 67 189 -69 368 54 0 36 chr12 9665650 9665706 -134120749 + (TTTTC)n Simple_repeat Simple_repeat 3 56 0 29 28 0 0 chr12 9668220 9668256 -134118199 + AT_rich Low_complexity Low_complexity 1 36 0 2353 249 104 40 chr12 9668339 9669648 -134116807 - Charlie2a DNA MER1_type -4 2858 1466 873 269 51 31 chr12 9669668 9670058 -134116397 - Charlie2b DNA MER1_type -2090 692 295 1046 275 101 9 chr12 9671223 9671874 -134114581 + L1ME3A LINE L1 5149 5894 -276 766 316 80 55 chr12 9672051 9672538 -134113917 + L2 LINE L2 2815 3313 0 297 0 0 0 chr12 9672800 9672833 -134113622 + (CA)n Simple_repeat Simple_repeat 2 34 0 514 171 9 18 chr12 9673984 9674095 -134112360 - MLT1A2 LTR MaLR 0 374 265 494 234 61 11 chr12 9674567 9674714 -134111741 + MIR SINE MIR 30 182 -63 462 236 174 108 chr12 9674844 9675205 -134111250 - L2 LINE L2 -2 3311 2927 466 236 202 35 chr12 9675659 9675862 -134110593 + MIR SINE MIR 21 257 -5 2449 48 3 22 chr12 9676712 9677023 -134109432 + AluY SINE Alu 1 305 -6 2457 73 0 0 chr12 9677854 9678156 -134108299 - AluY SINE Alu -4 307 6 305 202 109 126 chr12 9678289 9678472 -134107983 - HAL1 LINE L1 -379 2128 1949 815 214 74 68 chr12 9678493 9678830 -134107625 - MLT1A2 LTR MaLR 0 374 36 474 111 100 22 chr12 9678830 9678920 -134107535 - FLAM_A SINE Alu -16 126 30 231 320 0 0 chr12 9679202 9679277 -134107178 - HAL1 LINE L1 -1631 876 802 780 296 206 37 chr12 9679307 9679932 -134106523 - HAL1 LINE L1 -1767 740 10 1629 188 11 11 chr12 9679932 9680219 -134106236 - AluJo SINE Alu -25 287 1 23 0 0 0 chr12 9681382 9681405 -134105050 + AT_rich Low_complexity Low_complexity 1 23 0 287 322 81 72 chr12 9681442 9681678 -134104777 - MIR SINE MIR -23 239 2 1461 219 22 70 chr12 9681879 9682281 -134104174 - MLT1B LTR MaLR 0 390 8 694 180 0 23 chr12 9682335 9682463 -134103992 + FLAM_A SINE Alu 8 132 -10 267 54 0 0 chr12 9682492 9682529 -134103926 + (A)n Simple_repeat Simple_repeat 1 37 0 283 379 19 6 chr12 9684526 9684687 -134101768 - MIR SINE MIR -79 183 21 207 290 16 0 chr12 9684919 9684981 -134101474 - L2 LINE L2 -24 3248 3186 314 314 167 40 chr12 9685251 9685604 -134100851 + L2 LINE L2 2873 3270 -2 520 367 86 3 chr12 9686456 9686783 -134099672 - L2 LINE L2 -5 3267 2914 185 200 0 0 chr12 9689776 9689811 -134096644 - MIR SINE MIR -75 133 99 456 254 92 8 chr12 9689964 9690094 -134096361 - MIR SINE MIR -75 187 47 195 292 56 34 chr12 9691058 9691147 -134095308 - MIR SINE MIR -114 148 58 2007 107 6 28 chr12 9692156 9692474 -134093981 + AluSx SINE Alu 1 311 -1 281 256 47 110 chr12 9695961 9696059 -134090396 + MIR SINE MIR 46 128 -134 2259 76 3 3 chr12 9696059 9696362 -134090093 + AluY SINE Alu 1 303 -8 281 256 47 110 chr12 9696362 9696454 -134090001 + MIR SINE MIR 128 224 -38 685 267 174 20 chr12 9697368 9697734 -134088721 - L1MC4 LINE L1 -807 7001 6534 2019 116 30 0 chr12 9697734 9698036 -134088419 - AluSx SINE Alu -1 311 1 685 267 174 20 chr12 9698036 9698179 -134088276 - L1MC4 LINE L1 -1274 6534 6414 460 282 33 14 chr12 9698299 9698512 -134087943 - L1MC4a LINE L1 -1538 6270 6054 556 288 161 8 chr12 9698747 9698985 -134087470 - L1MC4a LINE L1 -473 5648 5419 231 312 0 13 chr12 9698985 9699062 -134087393 - MER5B DNA MER1_type -102 76 1 226 214 0 0 chr12 9704945 9705001 -134081454 + C-rich Low_complexity Low_complexity 5 60 0 2325 77 0 3 chr12 9705707 9706006 -134080449 + AluY SINE Alu 1 298 -13 208 280 0 0 chr12 9706081 9706131 -134080324 + GA-rich Low_complexity Low_complexity 1 50 0 312 303 200 5 chr12 9706823 9707008 -134079447 + L2 LINE L2 2870 3090 -182 517 228 181 0 chr12 9707047 9707196 -134079259 + MIR SINE MIR 25 200 -62 369 360 41 0 chr12 9707297 9707444 -134079011 + L2 LINE L2 3119 3271 -1 200 278 0 37 chr12 9709133 9709187 -134077268 + MIR SINE MIR 103 154 -108 1260 171 72 48 chr12 9709605 9709898 -134076557 + AluJb SINE Alu 5 304 -8 1145 171 116 3 chr12 9710082 9710309 -134076146 + MER33 DNA MER1_type 1 305 -2319 2143 109 7 0 chr12 9710309 9710612 -134075843 - AluSx SINE Alu -7 305 1 1145 171 116 3 chr12 9710612 9710668 -134075787 + MER33 DNA MER1_type 305 353 -10 291 389 72 23 chr12 9710924 9711145 -134075310 - MIR SINE MIR -30 232 1 306 0 0 0 chr12 9711257 9711291 -134075164 + (TA)n Simple_repeat Simple_repeat 1 34 0 208 265 82 20 chr12 9711353 9711451 -134075004 - MIR SINE MIR -55 207 104 4093 91 33 6 chr12 9712333 9712882 -134073573 - LTR6A LTR ERV1 0 564 1 1044 212 24 9 chr12 9712882 9713094 -134073361 - HERVS71 LTR ERV1 -105 8873 8659 * 12706 154 8 10 chr12 9713085 9715068 -134071387 - HERVS71 LTR ERV1 -2023 6955 4977 12468 179 21 10 chr12 9715061 9717196 -134069259 - HERVS71 LTR ERV1 -5477 3501 1344 * 805 174 5 97 chr12 9717209 9717416 -134069039 - MER53 DNA DNA 0 189 2 635 466 0 6 chr12 9717522 9717700 -134068755 + polypyrimidine Low_complexity Low_complexity 2 178 0 692 260 103 55 chr12 9717724 9718299 -134068156 - L2 LINE L2 -38 3275 2676 220 298 96 10 chr12 9718302 9718406 -134068049 + L2 LINE L2 3186 3298 -15 224 77 26 0 chr12 9718409 9718448 -134068007 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 266 305 232 0 chr12 9718617 9718781 -134067674 + L3 LINE CR1 560 761 -816 449 297 40 6 chr12 9718957 9719132 -134067323 - MIR SINE MIR -73 189 9 2881 117 9 14 chr12 9719186 9719629 -134066826 - L1PA13 LINE L1 0 6163 5723 180 0 0 0 chr12 9719637 9719657 -134066798 + (CATAG)n Simple_repeat Simple_repeat 4 23 0 357 332 64 52 chr12 9719668 9720011 -134066444 - L1ME3A LINE L1 -36 6134 5788 990 286 82 23 chr12 9720217 9720749 -134065706 - L1ME3A LINE L1 -465 5705 5140 831 238 152 36 chr12 9721469 9721771 -134064684 - MLT1E LTR MaLR -36 557 221 309 26 0 0 chr12 9721794 9721832 -134064623 + (GA)n Simple_repeat Simple_repeat 1 38 0 718 196 65 7 chr12 9721922 9722075 -134064380 + MLT1A1 LTR MaLR 1 162 -203 1446 219 37 13 chr12 9722845 9723220 -134063235 - MLT1B LTR MaLR -6 384 1 301 339 74 48 chr12 9723238 9723468 -134062987 - L1ME LINE L1 -469 5652 5417 257 333 47 16 chr12 9724012 9724141 -134062314 - L2 LINE L2 -1 3312 3180 4321 62 23 9 chr12 9725809 9726835 -134059620 - MER11A LTR ERVK 0 1266 1 3919 232 57 60 chr12 9727071 9727367 -134059088 - MER89-int LTR ERV1 -5142 1659 1364 2072 206 0 8 chr12 9727367 9727735 -134058720 - MLT1A1 LTR MaLR 0 365 1 3919 232 57 60 chr12 9727735 9728176 -134058279 - MER89-int LTR ERV1 -5437 1364 924 1234 219 13 43 chr12 9728176 9728343 -134058112 - AluJo SINE Alu -17 295 139 405 0 0 0 chr12 9728343 9728388 -134058067 + (TA)n Simple_repeat Simple_repeat 2 46 0 1234 219 13 43 chr12 9728388 9728522 -134057933 - AluJo SINE Alu -173 139 3 3919 232 57 60 chr12 9728522 9729145 -134057310 - MER89-int LTR ERV1 -5877 924 301 253 306 74 25 chr12 9730362 9730483 -134055972 + L2 LINE L2 3138 3264 -8 323 316 140 12 chr12 9730656 9730827 -134055628 + MIR SINE MIR 46 238 -24 348 24 0 0 chr12 9731064 9731105 -134055350 + (TG)n Simple_repeat Simple_repeat 2 42 0 1998 136 0 0 chr12 9731129 9731424 -134055031 - AluSx SINE Alu -17 295 1 203 390 39 0 chr12 9732346 9732423 -134054032 - L2 LINE L2 -36 3277 3198 214 345 109 8 chr12 9732792 9732911 -134053544 + L2 LINE L2 3169 3299 -14 426 283 14 57 chr12 9733496 9733708 -134052747 - L1PBb LINE L1 -5234 970 768 415 181 14 0 chr12 9733818 9733890 -134052565 + MER21B LTR ERV1 1 73 -790 234 0 0 0 chr12 9734626 9734652 -134051803 + (A)n Simple_repeat Simple_repeat 1 26 0 803 161 0 8 chr12 9735132 9735256 -134051199 - FLAM_C SINE Alu -19 124 2 1750 188 35 60 chr12 9735805 9736272 -134050183 + LTR56 LTR ERV1 9 437 0 212 225 0 0 chr12 9736863 9736903 -134049552 + L2 LINE L2 3273 3312 -1 552 294 22 13 chr12 9737181 9737388 -134049067 + MIR SINE MIR 8 262 0 312 312 54 11 chr12 9737773 9737866 -134048589 + MIR3 SINE MIR 85 181 -27 22 56 0 0 chr12 9738372 9738408 -134048047 + AT_rich Low_complexity Low_complexity 1 36 0 1453 186 41 29 chr12 9738479 9738893 -134047562 - SVA Other Other -536 850 432 241 280 51 34 chr12 9740344 9740462 -134045993 + L1ME4a LINE L1 5964 6083 -38 1635 163 3 20 chr12 9740588 9740882 -134045573 + AluJo SINE Alu 4 292 -20 590 214 149 7 chr12 9741769 9741923 -134044532 + MLT1C LTR MaLR 292 467 0 220 365 47 16 chr12 9742892 9743084 -134043371 + MIR3 SINE MIR 4 201 -7 2980 137 41 30 chr12 9743709 9744248 -134042207 - LTR10A LTR ERV1 -64 545 1 14322 75 14 4 chr12 9744294 9744943 -134041512 - L1PA6 LINE L1 0 6154 5513 2346 70 0 3 chr12 9744943 9745244 -134041211 - AluY SINE Alu -11 300 1 14322 75 14 4 chr12 9745244 9749187 -134037268 - L1PA6 LINE L1 -641 5513 1442 1155 164 108 15 chr12 9750462 9750731 -134035724 - L1MB7 LINE L1 0 6184 5891 445 241 141 29 chr12 9750761 9750931 -134035524 + MER90 LTR ERV1 426 614 0 1395 203 10 17 chr12 9752112 9752443 -134034012 - AluJb SINE Alu 0 312 1 474 243 10 0 chr12 9752495 9752598 -134033857 - MIR SINE MIR -116 146 43 499 242 31 40 chr12 9752737 9752896 -134033559 - MIR3 SINE MIR -12 196 39 258 320 29 10 chr12 9753354 9753457 -134032998 + L2 LINE L2 2715 2819 -495 2306 179 94 28 chr12 9753568 9753633 -134032822 - MER101B LTR ERV1 -2 568 509 3233 92 38 5 chr12 9753633 9754078 -134032377 - LTR46 LTR ERV1 0 460 1 2306 179 94 28 chr12 9754078 9754543 -134031912 - MER101B LTR ERV1 -61 509 3 259 298 43 11 chr12 9754625 9754719 -134031736 + L2 LINE L2 3215 3311 -2 1766 182 43 52 chr12 9756238 9756697 -134029758 + LTR56 LTR ERV1 13 437 0 402 298 53 23 chr12 9757650 9757781 -134028674 + MIR SINE MIR 8 142 -120 225 349 70 12 chr12 9757785 9757871 -134028584 - MIR SINE MIR -152 110 20 426 336 118 22 chr12 9759175 9759404 -134027051 + MIR SINE MIR 12 262 0 505 294 36 50 chr12 9759596 9759933 -134026522 + L1ME4a LINE L1 5479 5810 -311 2869 171 0 6 chr12 9760428 9760931 -134025524 - L1PA13 LINE L1 0 6163 5664 304 235 128 39 chr12 9760936 9761038 -134025417 + L1ME4a LINE L1 6000 6110 -11 1113 280 73 22 chr12 9761841 9762295 -134024160 - L1ME3 LINE L1 -244 5918 5442 883 211 16 5 chr12 9762327 9762517 -134023938 - AluJo SINE Alu -1 311 120 346 262 26 84 chr12 9762517 9762642 -134023813 - L1ME3 LINE L1 -743 5403 5272 2299 61 7 0 chr12 9762642 9762936 -134023519 - AluY SINE Alu -1 310 15 346 262 26 84 chr12 9762936 9763118 -134023337 - L1ME3 LINE L1 -874 5272 5124 28 48 0 0 chr12 9763143 9763185 -134023270 + AT_rich Low_complexity Low_complexity 1 42 0 1616 264 55 28 chr12 9763320 9764010 -134022445 - L1ME3 LINE L1 -1120 5026 4318 575 139 0 0 chr12 9764024 9764125 -134022330 - L1MB3 LINE L1 -3 6180 6080 2691 258 53 32 chr12 9764150 9765014 -134021441 - L1ME1 LINE L1 -5 6161 5280 599 275 0 0 chr12 9765020 9765151 -134021304 + FLAM_A SINE Alu 1 131 -2 1944 222 68 0 chr12 9765174 9765598 -134020857 + MLT1D LTR MaLR 1 453 -52 208 203 85 17 chr12 9766521 9766580 -134019875 + L2 LINE L2 2991 3053 -219 207 263 138 25 chr12 9767028 9767108 -134019347 - L2 LINE L2 0 3272 3184 1340 216 88 10 chr12 9767414 9767720 -134018735 - MER2 DNA MER2_type -13 332 3 262 318 37 19 chr12 9768330 9768437 -134018018 - L2 LINE L2 -41 3231 3123 647 229 78 26 chr12 9769967 9770120 -134016335 + MER58B DNA MER1_type 181 341 0 2272 101 0 0 chr12 9771635 9771941 -134014514 + AluSg SINE Alu 2 307 -3 206 229 104 0 chr12 9772359 9772407 -134014048 - MIR SINE MIR -6 256 204 255 231 148 19 chr12 9772769 9772877 -134013578 + MER5A DNA MER1_type 37 158 -31 * 396 210 12 0 chr12 9772815 9772896 -134013559 - MER5A DNA MER1_type -84 105 24 1589 249 46 60 chr12 9772951 9773452 -134013003 + MLT1F1 LTR MaLR 74 567 0 187 162 0 27 chr12 9773502 9773539 -134012916 + MIR SINE MIR 161 196 -66 1503 168 28 28 chr12 9773540 9773831 -134012624 + AluJo SINE Alu 6 296 -16 2072 118 3 0 chr12 9773831 9774136 -134012319 + AluSx SINE Alu 1 306 -6 316 125 0 0 chr12 9774151 9774199 -134012256 + MIR SINE MIR 183 230 -32 315 208 39 0 chr12 9774246 9774323 -134012132 - MER94 DNA DNA -51 83 4 1907 142 3 0 chr12 9775125 9775413 -134011042 + AluJo SINE Alu 5 293 -19 2042 141 0 3 chr12 9775788 9776093 -134010362 + AluSx SINE Alu 1 304 -8 1331 173 59 7 chr12 9776251 9776523 -134009932 - AluJb SINE Alu -26 286 1 254 286 143 0 chr12 9777472 9777570 -134008885 - L2 LINE L2 -8 3264 3153 2080 106 0 0 chr12 9778324 9778608 -134007847 - AluSx SINE Alu -8 304 21 1810 86 83 43 chr12 9778668 9778969 -134007486 - AluSp SINE Alu 0 313 1 23 0 0 0 chr12 9779562 9779585 -134006870 + AT_rich Low_complexity Low_complexity 1 23 0 1031 91 0 85 chr12 9779591 9779767 -134006688 + AluSx SINE Alu 14 174 -138 1092 245 48 75 chr12 9779767 9780183 -134006272 + MLT1F1 LTR MaLR 163 567 0 1543 127 0 4 chr12 9980278 9980514 -133805941 - L1P LINE L1 -2524 3622 3388 8060 101 10 15 chr12 9980515 9981675 -133804780 - L1P3 LINE L1 -5299 1162 8 3433 145 0 11 chr12 9982368 9982900 -133803555 - MER1A DNA MER1_type 0 527 2 249 257 143 38 chr12 9983069 9983174 -133803281 + MIR SINE MIR 46 161 -101 195 69 0 0 chr12 9983239 9983268 -133803187 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 216 0 0 0 chr12 9983560 9983584 -133802871 + (T)n Simple_repeat Simple_repeat 1 24 0 1993 139 13 7 chr12 9983805 9984106 -133802349 + AluSx SINE Alu 1 303 -9 3534 249 38 41 chr12 9984134 9987231 -133799224 + L1M4c LINE L1 31 3333 -3049 21 71 0 0 chr12 9987285 9987327 -133799128 + AT_rich Low_complexity Low_complexity 1 42 0 1963 130 0 14 chr12 9987457 9987790 -133798665 - AluSx SINE Alu 0 348 20 233 259 104 7 chr12 9987860 9987995 -133798460 + L1ME LINE L1 5682 5829 -333 193 316 168 0 chr12 9989012 9989107 -133797348 + L2 LINE L2 3198 3308 -5 1730 178 0 25 chr12 9989169 9989483 -133796972 - AluJb SINE Alu -6 306 1 437 200 200 0 chr12 9990286 9990411 -133796044 + L1MA9 LINE L1 5301 5450 -862 1327 164 19 0 chr12 9990427 9990640 -133795815 - THE1B LTR MaLR -2 362 146 324 48 0 0 chr12 9991225 9991267 -133795188 + (ATG)n Simple_repeat Simple_repeat 3 44 0 22 35 0 0 chr12 9991904 9991933 -133794522 + AT_rich Low_complexity Low_complexity 1 29 0 596 198 60 0 chr12 9991934 9992050 -133794405 - THE1B LTR MaLR -252 123 1 3204 184 62 49 chr12 9992051 9992391 -133794064 + L1MA9 LINE L1 5464 5798 -514 225 94 0 0 chr12 9992391 9992423 -133794032 + (TA)n Simple_repeat Simple_repeat 1 32 0 3204 184 62 49 chr12 9992423 9992466 -133793989 + L1MA9 LINE L1 5798 5839 -473 3739 101 0 4 chr12 9992466 9992979 -133793476 + MER9 LTR ERVK 1 511 0 3204 184 62 49 chr12 9992979 9993394 -133793061 + L1MA9 LINE L1 5839 6274 -38 1488 138 49 30 chr12 9993463 9993768 -133792687 - L1MA7 LINE L1 0 6291 5981 1766 175 49 3 chr12 9993775 9994123 -133792332 + L1 LINE L1 4875 5238 -908 1560 226 107 15 chr12 9994123 9994663 -133791792 + LTR48B LTR ERV1 1 590 -54 1438 246 68 64 chr12 9995037 9995477 -133790978 + MLT2B3 LTR ERVL 1 442 -112 485 163 47 0 chr12 9995762 9995848 -133790607 - MLT2B2 LTR ERVL -425 90 1 2248 203 82 59 chr12 9997179 9997987 -133788468 - LTR1B LTR ERV1 0 826 1 1636 216 0 0 chr12 9998745 9999064 -133787391 - AluJb SINE Alu 0 319 1 10446 166 33 4 chr12 9999777 10002522 -133783933 - L1PA12 LINE L1 0 6168 3355 314 164 15 15 chr12 10002848 10002915 -133783540 + LTR1 LTR ERV1 12 78 -707 * 976 101 7 14 chr12 10002909 10003047 -133783408 + LTR1 LTR ERV1 649 785 0 12158 161 30 12 chr12 10003139 10005157 -133781298 + HUERS-P2 LTR ERV1 207 2260 -828 3859 163 26 8 chr12 10005157 10005814 -133780641 + HUERS-P2 LTR ERV1 2420 3088 0 3824 119 52 103 chr12 10005820 10006629 -133779826 + LTR1 LTR ERV1 18 785 0 22 0 0 0 chr12 10006876 10006898 -133779557 + AT_rich Low_complexity Low_complexity 1 22 0 1085 299 113 80 chr12 10006901 10007432 -133779023 + L2 LINE L2 1932 2547 -767 278 116 70 0 chr12 10007432 10007475 -133778980 + FLAM_A SINE Alu 64 109 -24 1085 299 113 80 chr12 10007475 10007791 -133778664 + L2 LINE L2 2547 2851 -463 1149 257 12 6 chr12 10007850 10008181 -133778274 - L1MCc LINE L1 -1926 5015 4683 2847 42 0 0 chr12 10008300 10008632 -133777823 - LTR2B LTR ERV1 0 490 159 230 333 30 10 chr12 10008640 10008739 -133777716 + L2 LINE L2 2751 2851 -463 1249 20 47 0 chr12 10008820 10008968 -133777487 - LTR2B LTR ERV1 -335 155 1 11714 172 12 6 chr12 10008968 10011006 -133775449 - Harlequin LTR ERV1 0 6896 4846 1151 124 0 0 chr12 10012500 10012661 -133773794 + AluY SINE Alu 3 163 -148 375 250 86 26 chr12 10012735 10012887 -133773568 + MER104 DNA Tc2 15 175 -5 240 217 100 0 chr12 10012884 10012944 -133773511 + MLT1J LTR MaLR 427 492 -19 * 538 264 17 17 chr12 10013025 10013199 -133773256 - L1M4 LINE L1 -1263 4883 4710 1795 237 56 52 chr12 10013199 10013896 -133772559 - L1MCc LINE L1 -3028 3913 3211 1892 175 18 45 chr12 10013896 10014297 -133772158 + MLT1B LTR MaLR 1 390 0 1795 237 56 52 chr12 10014297 10014337 -133772118 - L1MCc LINE L1 -3730 3211 3173 497 263 74 91 chr12 10014344 10014523 -133771932 - L1MCc LINE L1 -5060 1363 1191 929 174 105 65 chr12 10014523 10014614 -133771841 + AluJo SINE Alu 2 88 -214 2462 78 0 0 chr12 10014614 10014921 -133771534 + AluY SINE Alu 1 307 -4 929 174 105 65 chr12 10014921 10015105 -133771350 + AluJo SINE Alu 88 288 -14 497 263 74 91 chr12 10015105 10015264 -133771191 - L1MCc LINE L1 -5232 1191 1031 2251 74 10 7 chr12 10015711 10016010 -133770445 - AluSp SINE Alu -13 300 1 339 374 26 63 chr12 10016024 10016374 -133770081 - L1MCc LINE L1 -5630 792 456 189 276 92 13 chr12 10018400 10018476 -133767979 - L2 LINE L2 0 3313 3232 267 122 0 0 chr12 10018793 10018842 -133767613 + (CA)n Simple_repeat Simple_repeat 2 50 0 1577 275 89 50 chr12 10018844 10019275 -133767180 + L1ME LINE L1 99 512 -5568 1682 186 16 13 chr12 10019275 10019586 -133766869 + AluSx SINE Alu 1 312 0 1577 275 89 50 chr12 10019586 10020637 -133765818 + L1ME LINE L1 512 1643 -4437 532 260 93 51 chr12 10021481 10021912 -133764543 + L1MEd LINE L1 700 1148 -4971 32 67 0 0 chr12 10022393 10022453 -133764002 + AT_rich Low_complexity Low_complexity 1 60 0 196 190 52 35 chr12 10022751 10022809 -133763646 + L3 LINE CR1 623 681 -896 23 54 0 0 chr12 10023717 10023754 -133762701 + AT_rich Low_complexity Low_complexity 1 37 0 357 329 88 7 chr12 10024099 10024236 -133762219 + MIR3 SINE MIR 54 201 -7 325 331 149 11 chr12 10025451 10025626 -133760829 - MIR3 SINE MIR -4 204 6 1675 182 19 3 chr12 10026048 10026355 -133760100 - AluJb SINE Alu 0 312 1 207 416 0 0 chr12 10026663 10026740 -133759715 - L2 LINE L2 -5 3267 3191 311 337 28 72 chr12 10029165 10029414 -133757041 + HAL1 LINE L1 48 285 -2222 2043 37 53 0 chr12 10029826 10030071 -133756384 - AluY SINE Alu -17 294 37 224 283 33 0 chr12 10030175 10030235 -133756220 + L2 LINE L2 3203 3264 -8 2096 119 0 3 chr12 10030354 10030647 -133755808 + AluSg SINE Alu 1 292 -18 1495 233 68 11 chr12 10030771 10031230 -133755225 - L1M4 LINE L1 -1570 4576 4092 234 0 0 0 chr12 10031389 10031415 -133755040 + (TA)n Simple_repeat Simple_repeat 2 27 0 2279 64 0 4 chr12 10031426 10031707 -133754748 - AluY SINE Alu -31 280 1 273 330 16 62 chr12 10032035 10032405 -133754050 - L1MEc LINE L1 -5451 1374 1022 1470 320 70 23 chr12 10032803 10033530 -133752925 - HAL1 LINE L1 -861 1646 856 2163 98 3 23 chr12 10033530 10033835 -133752620 - AluSx SINE Alu -13 299 1 1470 320 70 23 chr12 10033835 10034115 -133752340 - HAL1 LINE L1 -1651 856 591 3980 142 33 40 chr12 10034126 10035513 -133750942 - pTR5 LTR ERV1 0 2438 742 2291 228 66 27 chr12 10035750 10036312 -133750143 - MLT1E LTR MaLR -1 592 9 27 49 0 0 chr12 10036421 10036462 -133749993 + AT_rich Low_complexity Low_complexity 1 41 0 393 278 101 53 chr12 10036922 10037091 -133749364 - MIR SINE MIR -60 202 26 1161 243 116 47 chr12 10037462 10038059 -133748396 - L1ME3 LINE L1 -230 5932 5295 554 279 32 0 chr12 10038088 10038246 -133748209 - L1MEc LINE L1 -5727 815 653 866 217 73 80 chr12 10038248 10038562 -133747893 - L1MEc LINE L1 -5793 749 438 2115 114 0 0 chr12 10038731 10039012 -133747443 - AluSx SINE Alu -27 285 5 416 305 142 0 chr12 10039064 10039261 -133747194 + MIR SINE MIR 38 262 0 198 0 0 0 chr12 10039679 10039701 -133746754 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 865 189 0 0 chr12 10039701 10039849 -133746606 - FRAM SINE Alu -18 148 1 525 278 10 26 chr12 10040097 10040352 -133746103 - MER20 DNA MER1_type 0 219 1 1502 228 129 42 chr12 10040518 10040991 -133745464 - MER67D LTR ERV1 0 514 1 2072 137 0 0 chr12 10041031 10041330 -133745125 - AluSx SINE Alu -13 299 1 32 98 0 0 chr12 10041560 10041662 -133744793 + AT_rich Low_complexity Low_complexity 1 102 0 606 304 78 18 chr12 10041854 10042189 -133744266 + L1M4 LINE L1 4012 4366 -1780 896 185 98 5 chr12 10042208 10042392 -133744063 - MLT1E2 LTR MaLR -8 618 418 1793 156 131 0 chr12 10042392 10042744 -133743711 + MSTB LTR MaLR 1 398 -28 599 111 0 10 chr12 10042749 10042848 -133743607 + (TTCC)n Simple_repeat Simple_repeat 1 98 0 1641 182 17 3 chr12 10042848 10043150 -133743305 - AluJb SINE Alu -4 308 3 341 286 31 0 chr12 10043191 10043289 -133743166 - MLT1E2 LTR MaLR -204 422 322 580 13 26 0 chr12 10043334 10043411 -133743044 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 286 265 61 0 chr12 10043434 10043532 -133742923 - L1ME3 LINE L1 -893 5253 5150 975 164 29 5 chr12 10043944 10044151 -133742304 - L1MA7 LINE L1 -1 6290 6079 2226 94 13 0 chr12 10044436 10044791 -133741664 + AluSx SINE Alu 1 359 0 473 303 81 30 chr12 10044797 10045193 -133741262 - L1ME4a LINE L1 -58 6063 5648 188 178 22 44 chr12 10046062 10046107 -133740348 - MIR SINE MIR -35 227 184 182 225 70 28 chr12 10046668 10046739 -133739716 - MER5C DNA MER1_type -177 147 74 2193 163 21 39 chr12 10047056 10047492 -133738963 - MSTA LTR MaLR 0 428 1 189 0 0 0 chr12 10050329 10050350 -133736105 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1718 164 0 18 chr12 10052166 10052447 -133734008 + AluJb SINE Alu 5 280 -32 219 36 0 0 chr12 10052447 10052475 -133733980 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2437 222 50 25 chr12 10052594 10053290 -133733165 + L1ME2 LINE L1 5458 6161 -3 2318 50 0 0 chr12 10054298 10054575 -133731880 - AluY SINE Alu -11 300 24 234 0 0 0 chr12 10054854 10054880 -133731575 + (TTA)n Simple_repeat Simple_repeat 2 27 0 299 342 25 0 chr12 10056656 10056776 -133729679 - L2 LINE L2 0 3272 3150 551 329 137 44 chr12 10057382 10058008 -133728447 + L2 LINE L2 2627 3313 0 190 398 82 25 chr12 10058138 10058334 -133728121 - L2 LINE L2 -229 3084 2878 2323 88 0 38 chr12 10058939 10059258 -133727197 - AluSq SINE Alu -6 307 1 391 266 43 125 chr12 10061242 10061546 -133724909 + L1M4 LINE L1 3333 3611 -2535 390 306 90 55 chr12 10061631 10062053 -133724402 + L1M4 LINE L1 3753 4189 -1957 256 235 25 6 chr12 10062084 10062137 -133724318 - L1MD3 LINE L1 -18 7977 7927 2167 122 3 0 chr12 10062137 10062448 -133724007 - AluSx SINE Alu 0 312 1 256 235 25 6 chr12 10062448 10062617 -133723838 - L1MD3 LINE L1 -68 7927 5997 1618 149 29 16 chr12 10062626 10062941 -133723514 - L1MD3 LINE L1 -762 5597 5279 273 272 88 72 chr12 10064586 10065199 -133721256 - L1ME LINE L1 -2499 3581 2959 895 269 5 0 chr12 10065214 10065415 -133721040 + MER58A DNA MER1_type 1 202 -22 358 250 70 6 chr12 10065446 10065602 -133720853 - L1ME LINE L1 -3128 2952 2787 1004 248 113 14 chr12 10065610 10065973 -133720482 - L1ME LINE L1 -3340 2740 2342 1319 227 35 38 chr12 10066086 10066425 -133720030 + MLT2B1 LTR ERVL 1 338 -182 188 35 35 0 chr12 10066574 10066603 -133719852 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 244 224 0 0 chr12 10066661 10066710 -133719745 - MER58A DNA MER1_type -37 70 22 287 85 21 0 chr12 10066741 10066788 -133719667 + (TA)n Simple_repeat Simple_repeat 1 48 0 334 230 125 46 chr12 10066816 10066968 -133719487 - L1ME LINE L1 -5590 480 317 332 83 0 0 chr12 10066975 10067014 -133719441 - MLT2B1 LTR ERVL 0 520 479 414 0 0 0 chr12 10067014 10067060 -133719395 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 910 324 68 13 chr12 10067162 10067542 -133718913 + LTR16B LTR ERVL 64 464 0 236 320 117 0 chr12 10068212 10068315 -133718140 - MLT1L LTR MaLR -171 444 330 263 397 13 13 chr12 10068513 10068669 -133717786 + MIR SINE MIR 102 257 -5 198 0 0 0 chr12 10069043 10069065 -133717390 + (A)n Simple_repeat Simple_repeat 1 22 0 353 314 7 50 chr12 10069336 10069476 -133716979 - L2 LINE L2 0 3313 3180 594 238 18 9 chr12 10069493 10069716 -133716739 - L1M4 LINE L1 -2875 3271 3047 3881 153 35 43 chr12 10069717 10070434 -133716021 - MER50 LTR ERV1 -23 711 1 1469 226 56 16 chr12 10070434 10070877 -133715578 - L1M4 LINE L1 -3096 3050 2590 721 212 191 11 chr12 10070879 10071150 -133715305 + MER4C LTR ERV1 1 419 -178 2498 57 3 0 chr12 10071172 10071471 -133714984 - AluY SINE Alu -11 300 1 859 179 17 6 chr12 10071489 10071662 -133714793 + MER4C LTR ERV1 274 448 -17 372 204 11 21 chr12 10071696 10071789 -133714666 + MER4C-int LTR ERV1 4 95 -6503 310 256 0 12 chr12 10071902 10071988 -133714467 + MER4C-int LTR ERV1 352 436 -6162 891 227 124 23 chr12 10072257 10072556 -133713899 + LTR49 LTR ERV1 263 591 -4 1156 195 58 11 chr12 10072561 10072824 -133713631 + LTR49-int LTR ERV1 3 626 -4591 308 191 63 0 chr12 10072831 10072894 -133713561 + LTR49-int LTR ERV1 1556 1622 -3258 * 977 244 42 23 chr12 10072886 10073179 -133713276 + MER4C-int LTR ERV1 986 1866 -3014 3485 109 6 17 chr12 10073182 10073713 -133712742 - L1PA15 LINE L1 -2 6163 5639 2123 137 20 19 chr12 10073714 10074112 -133712343 + MLT2A2 LTR ERVL 1 309 -144 396 167 0 0 chr12 10074111 10074171 -133712284 - AluS SINE Alu -248 60 1 * 8297 235 22 28 chr12 10074184 10077465 -133708990 - L1PA13 LINE L1 -2438 4359 1094 314 226 29 49 chr12 10077467 10077569 -133708886 - L1MC4 LINE L1 -1339 6703 6604 2383 75 3 31 chr12 10077606 10077926 -133708529 - AluY SINE Alu 0 311 1 830 242 16 5 chr12 10077984 10078170 -133708285 + MER4C-int LTR ERV1 1844 2031 -4300 3991 125 35 8 chr12 10078173 10078795 -133707660 - LTR9B LTR ERV1 0 644 6 978 222 89 89 chr12 10078800 10079145 -133707310 + MER4C-int LTR ERV1 769 1112 -5522 2294 84 3 7 chr12 10079145 10079455 -133707000 - AluSc SINE Alu 0 309 1 978 222 89 89 chr12 10079455 10079601 -133706854 + MER4C-int LTR ERV1 1112 3414 -3220 241 226 65 0 chr12 10079605 10079667 -133706788 + MER34C LTR ERV1 165 230 -355 1523 182 94 100 chr12 10079689 10080652 -133705803 + HUERS-P1 LTR ERV1 1100 3569 -2694 * 4367 152 39 50 chr12 10080649 10082003 -133704452 + HUERS-P1 LTR ERV1 4234 5560 -771 261 184 237 13 chr12 10082003 10082079 -133704376 + LTR37A LTR ERV1 4 96 -330 794 135 43 49 chr12 10082079 10082242 -133704213 + HUERS-P1 LTR ERV1 5638 5799 -532 300 27 0 0 chr12 10082259 10082296 -133704159 + (CA)n Simple_repeat Simple_repeat 1 37 0 814 249 10 10 chr12 10082457 10082654 -133703801 + HUERS-P1 LTR ERV1 6401 6597 -1 619 255 159 8 chr12 10082656 10082929 -133703526 + MER4C LTR ERV1 1 499 -186 501 232 15 71 chr12 10083018 10083216 -133703239 + MER4C LTR ERV1 276 462 -3 1041 250 114 38 chr12 10083226 10083606 -133702849 - L1M4 LINE L1 -3548 3096 2746 1292 184 90 18 chr12 10083606 10083883 -133702572 - AluJo SINE Alu -15 297 1 1041 250 114 38 chr12 10083883 10084567 -133701888 - L1M4 LINE L1 -3898 2746 1919 3861 181 25 5 chr12 10084570 10085654 -133700801 - L1P5 LINE L1 -516 5638 4537 3464 142 54 27 chr12 10085662 10086289 -133700166 + LTR9B LTR ERV1 1 644 0 1752 290 21 38 chr12 10086289 10086896 -133699559 - L1M4 LINE L1 -5936 606 10 194 312 112 69 chr12 10087353 10087696 -133698759 - L2 LINE L2 -710 2604 2242 570 29 0 0 chr12 10087696 10087764 -133698691 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 194 312 112 69 chr12 10087764 10087795 -133698660 - L2 LINE L2 -1072 2242 2214 918 286 135 11 chr12 10087894 10088258 -133698197 + LTR16A LTR ERVL 42 450 0 285 340 21 0 chr12 10089835 10089929 -133696526 + L2 LINE L2 1125 1220 -2094 850 316 217 9 chr12 10089934 10090611 -133695844 + L2 LINE L2 1836 2653 -661 558 242 61 30 chr12 10090656 10090854 -133695601 + L2 LINE L2 3106 3309 -4 391 318 7 20 chr12 10091704 10091852 -133694603 + L2 LINE L2 1879 2024 -1290 323 115 19 0 chr12 10092398 10092450 -133694005 - MADE1 DNA Mariner -27 53 1 26 0 0 0 chr12 10093324 10093350 -133693105 + AT_rich Low_complexity Low_complexity 1 26 0 203 184 0 0 chr12 10093981 10094019 -133692436 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 34 55 0 0 chr12 10095193 10095248 -133691207 + AT_rich Low_complexity Low_complexity 1 55 0 3252 162 11 30 chr12 10095249 10095687 -133690768 - L1MC1 LINE L1 -465 5868 5423 1452 152 8 19 chr12 10095687 10095944 -133690511 - L1PB3 LINE L1 -7 6147 5894 3252 162 11 30 chr12 10095944 10096205 -133690250 - L1MC1 LINE L1 -910 5423 5182 6731 78 3 3 chr12 10096205 10097348 -133689107 - L1PA8 LINE L1 -5 6167 5024 3252 162 11 30 chr12 10097348 10097367 -133689088 - L1MC1 LINE L1 -1151 5182 5164 * 9375 111 20 0 chr12 10097351 10098741 -133687714 + L1P LINE L1 3634 5051 -1095 1486 257 21 50 chr12 10098739 10099358 -133687097 - L1MC1 LINE L1 -945 5201 4601 * 1564 204 19 11 chr12 10099355 10100049 -133686406 - L1M4 LINE L1 -581 5672 4971 1285 265 63 11 chr12 10100057 10100514 -133685941 - L1M4 LINE L1 -2045 4170 3690 1100 216 48 128 chr12 10100522 10100920 -133685535 - MLT1A2 LTR MaLR -8 366 1 1889 244 33 36 chr12 10100921 10101802 -133684653 - L1M4 LINE L1 -2523 3692 2815 486 292 71 28 chr12 10101836 10102041 -133684414 - L1M4 LINE L1 -3856 2359 2164 1615 194 16 16 chr12 10102041 10102351 -133684104 - AluJb SINE Alu -2 310 1 486 292 71 28 chr12 10102351 10102753 -133683702 - L1M4 LINE L1 -4051 2164 1771 481 306 44 55 chr12 10102805 10103219 -133683236 - L1M4c LINE L1 -4416 2147 1596 489 307 5 48 chr12 10103478 10103667 -133682788 - L1ME3 LINE L1 0 6162 5982 374 277 215 30 chr12 10104302 10104674 -133681781 + L3 LINE CR1 586 1026 -551 258 375 42 7 chr12 10104865 10105009 -133681446 + L3 LINE CR1 1192 1340 -237 1184 263 44 54 chr12 10107081 10107453 -133679002 - LTR51 LTR ERV1 -47 624 255 2509 62 0 0 chr12 10107453 10107760 -133678695 + AluY SINE Alu 1 307 -4 1184 263 44 54 chr12 10107760 10107794 -133678661 - LTR51 LTR ERV1 -416 255 222 432 225 22 124 chr12 10108309 10108487 -133677968 + LTR49-int LTR ERV1 2278 2437 -3894 31 0 0 0 chr12 10108493 10108524 -133677931 + AT_rich Low_complexity Low_complexity 1 31 0 731 0 0 0 chr12 10108524 10108608 -133677847 - L1PA3 LINE L1 -4 6151 6068 776 178 19 13 chr12 10108690 10108847 -133677608 - FRAM SINE Alu -25 151 1 2178 242 87 73 chr12 10108936 10110156 -133676299 + L1M2 LINE L1 3 1239 -5610 1698 138 68 31 chr12 10110159 10110513 -133675942 + L1MA4A LINE L1 5937 6303 0 695 359 41 38 chr12 10111021 10111186 -133675269 - ERVL LTR ERVL -570 5194 5031 2217 110 7 0 chr12 10111186 10111486 -133674969 - AluSp SINE Alu -11 302 1 695 359 41 38 chr12 10111486 10111905 -133674550 - ERVL LTR ERVL -733 5031 4608 1875 71 37 37 chr12 10112095 10112363 -133674092 - AluY SINE Alu -4 307 40 200 206 0 0 chr12 10113368 10113402 -133673053 + (CAT)n Simple_repeat Simple_repeat 2 35 0 700 328 54 8 chr12 10113770 10114029 -133672426 - ERVL LTR ERVL -1176 4588 4318 8381 244 32 25 chr12 10114190 10117929 -133668526 + L1PA13 LINE L1 12 2971 -4610 14267 195 18 32 chr12 10117938 10121249 -133665206 + L1PA13 LINE L1 3524 6789 -795 1240 116 0 0 chr12 10121486 10121667 -133664788 - L1PA13 LINE L1 -5 6158 5978 4837 111 23 3 chr12 10121667 10122404 -133664051 + L1PA13 LINE L1 6847 7598 -3 2315 98 0 3 chr12 10123454 10123750 -133662705 - AluSq SINE Alu -18 295 1 253 304 9 9 chr12 10124460 10124572 -133661883 - L1MC4a LINE L1 -1288 6520 6409 1645 174 3 23 chr12 10124840 10125145 -133661310 + AluJo SINE Alu 1 299 -13 225 198 11 55 chr12 10125455 10125546 -133660909 + T-rich Low_complexity Low_complexity 4 90 0 380 257 148 27 chr12 10125673 10126203 -133660252 - L1M4 LINE L1 -1882 4264 3661 675 84 0 0 chr12 10126329 10126424 -133660031 - AluSg/x SINE Alu -1 311 217 26 30 0 0 chr12 10126501 10126534 -133659921 + AT_rich Low_complexity Low_complexity 1 33 0 413 65 0 16 chr12 10128013 10128075 -133658380 + (TG)n Simple_repeat Simple_repeat 1 61 0 359 276 61 0 chr12 10128398 10128496 -133657959 + L2 LINE L2 3210 3313 0 204 258 0 32 chr12 10128987 10129049 -133657406 - L2 LINE L2 -64 3208 3149 22 56 0 0 chr12 10129253 10129289 -133657166 + AT_rich Low_complexity Low_complexity 1 36 0 2945 76 2 19 chr12 10129289 10129708 -133656747 - LTR7 LTR ERV1 -38 412 1 13097 84 5 11 chr12 10129709 10131552 -133654903 - HERVH LTR ERV1 -1 7712 5881 2555 71 3 0 chr12 10131551 10131890 -133654565 + HERVH LTR ERV1 5526 5865 -1848 * 1384 157 137 26 chr12 10132339 10132683 -133653772 - L1MB5 LINE L1 -10 6164 5783 340 274 0 21 chr12 10132694 10132789 -133653666 - L1MC4 LINE L1 -1336 6706 6614 1153 189 0 27 chr12 10132819 10133041 -133653414 - L1M4 LINE L1 -5827 715 500 261 262 48 24 chr12 10134199 10134283 -133652172 + HERVL74 LTR ERVL 1821 1906 -3779 595 210 24 16 chr12 10134297 10134421 -133652034 + MLT1A2 LTR MaLR 1 125 -249 1116 225 92 23 chr12 10134421 10134767 -133651688 - MLT1A2 LTR MaLR -1 373 4 228 234 0 0 chr12 10134770 10134817 -133651638 - MLT1A2-int LTR MaLR 0 1735 1689 3833 184 64 21 chr12 10134845 10135723 -133650732 + L1MB7 LINE L1 5239 6153 -31 228 73 0 24 chr12 10136067 10136108 -133650347 - L1PA13 LINE L1 -725 5436 5397 5065 89 14 18 chr12 10136108 10136842 -133649613 + L1PA13 LINE L1 5430 6160 -3 484 210 30 0 chr12 10137396 10137496 -133648959 - MER96B DNA MER1_type? -312 105 3 37 0 0 0 chr12 10138259 10138296 -133648159 + AT_rich Low_complexity Low_complexity 1 37 0 1738 241 115 2 chr12 10138333 10138785 -133647670 + MLT1D LTR MaLR 3 505 0 23 54 0 0 chr12 10139261 10139298 -133647157 + AT_rich Low_complexity Low_complexity 1 37 0 191 339 74 25 chr12 10139366 10139487 -133646968 - MIR SINE MIR -44 218 92 25315 112 14 90 chr12 10140548 10142705 -133643750 - L1P LINE L1 -1660 4486 2898 198 0 0 0 chr12 10142705 10142727 -133643728 + (TTTTA)n Simple_repeat Simple_repeat 3 24 0 25315 112 14 90 chr12 10142727 10145411 -133641044 - L1P LINE L1 -3248 2898 12 1759 170 50 0 chr12 10145423 10145706 -133640749 - AluJb SINE Alu -15 297 1 1292 148 24 77 chr12 10145716 10146011 -133640444 + MER67C LTR ERV1 40 343 -246 2050 28 0 8 chr12 10146022 10146272 -133640183 - L1PA2 LINE L1 0 6155 5908 710 263 34 14 chr12 10146290 10146499 -133639956 - MER34 LTR ERV1 -294 248 36 1482 44 59 39 chr12 10146746 10146949 -133639506 - AluY SINE Alu -104 207 1 2631 153 9 19 chr12 10147571 10148036 -133638419 - MER65C LTR ERV1 -1 460 1 275 152 0 0 chr12 10148045 10148091 -133638364 + MER67C LTR ERV1 356 401 -309 325 309 86 0 chr12 10148105 10148244 -133638211 + MER67D LTR ERV1 356 506 -8 286 257 157 14 chr12 10148272 10148412 -133638043 - L1MC4 LINE L1 -969 7073 6914 410 66 33 0 chr12 10148426 10148487 -133637968 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 540 252 50 64 chr12 10149025 10149243 -133637212 + MER20 DNA MER1_type 1 215 -4 193 377 44 26 chr12 10149958 10150072 -133636383 + MIR3 SINE MIR 53 168 -40 230 365 40 24 chr12 10152265 10152391 -133634064 - L2 LINE L2 -4 3268 3141 221 317 35 56 chr12 10152598 10152740 -133633715 - L3 LINE CR1 -294 1283 1145 340 257 69 20 chr12 10153461 10153562 -133632893 + MLT2E LTR ERVL 54 159 -469 281 239 0 11 chr12 10154042 10154134 -133632321 + (TA)n Simple_repeat Simple_repeat 2 92 0 413 264 74 63 chr12 10154485 10154769 -133631686 + L1ME3A LINE L1 2964 3250 -2896 1566 295 108 39 chr12 10154821 10157035 -133629420 + L1ME3A LINE L1 3389 5759 -411 999 211 84 39 chr12 10157075 10157383 -133629072 + MER58B DNA MER1_type 16 337 -4 288 270 18 36 chr12 10157398 10157509 -133628946 + L1ME3A LINE L1 5816 5924 -246 328 274 0 9 chr12 10157552 10157665 -133628790 + L1ME3A LINE L1 5912 6023 -147 3868 196 70 21 chr12 10157973 10158776 -133627679 + L1M3f LINE L1 1 842 -4486 12154 108 29 2 chr12 10158777 10159412 -133627043 + L1PA7 LINE L1 3515 4132 -2022 180 0 0 0 chr12 10159412 10159432 -133627023 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 12154 108 29 2 chr12 10159432 10161423 -133625032 + L1PA7 LINE L1 4132 6153 -1 362 216 43 74 chr12 10163106 10163268 -133623187 + L1MC5 LINE L1 7370 7526 -435 2479 134 8 0 chr12 10163426 10163798 -133622657 - THE1C LTR MaLR 0 375 1 309 224 59 0 chr12 10164087 10164172 -133622283 - L1MC2 LINE L1 -9 6335 6246 838 223 67 42 chr12 10164176 10164953 -133621502 + L1MC1 LINE L1 1455 2211 -4413 1406 236 7 10 chr12 10164953 10165263 -133621192 + AluJo SINE Alu 1 309 -3 838 223 67 42 chr12 10165263 10165771 -133620684 + L1MC1 LINE L1 2211 2705 -3919 1634 210 7 0 chr12 10165771 10166081 -133620374 + AluSx SINE Alu 1 312 0 838 223 67 42 chr12 10166081 10168300 -133618155 + L1MC1 LINE L1 2705 5272 -1352 2400 63 3 13 chr12 10168300 10168602 -133617853 + AluY SINE Alu 1 299 -12 838 223 67 42 chr12 10168602 10169236 -133617219 + L1MC1 LINE L1 5272 5889 -735 7892 186 38 52 chr12 10169249 10171348 -133615107 + L1P3 LINE L1 10 2091 -4370 624 255 36 16 chr12 10171344 10171432 -133615023 + L1MC1 LINE L1 6416 6501 -112 * 1756 153 131 28 chr12 10171432 10171791 -133614664 + MSTD LTR MaLR 1 396 0 624 255 36 16 chr12 10171791 10171894 -133614561 + L1MC1 LINE L1 6501 6611 -2 2443 44 10 0 chr12 10172274 10172568 -133613887 + AluY SINE Alu 1 297 -14 663 230 79 62 chr12 10172980 10173284 -133613171 + L1MDb LINE L1 783 1091 -5318 311 236 112 77 chr12 10174749 10174982 -133611473 - L1ME3A LINE L1 -6 6164 5924 300 303 133 12 chr12 10175894 10176059 -133610396 - MIR SINE MIR -15 247 63 1986 134 39 0 chr12 10176508 10176791 -133609664 + AluSx SINE Alu 1 294 -18 1663 95 0 0 chr12 10176797 10177018 -133609437 + AluY SINE Alu 84 304 -7 22 0 0 0 chr12 10177018 10177040 -133609415 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr12 10177405 10177456 -133608999 + AT_rich Low_complexity Low_complexity 1 51 0 2276 107 7 0 chr12 10177794 10178103 -133608352 + AluSx SINE Alu 1 311 -1 2032 200 86 28 chr12 10178177 10178607 -133607848 + MLT1D LTR MaLR 1 461 -44 1976 181 14 14 chr12 10178607 10178972 -133607483 - MLT1A1 LTR MaLR 0 365 1 2032 200 86 28 chr12 10178972 10179006 -133607449 + MLT1D LTR MaLR 461 492 -13 192 279 27 72 chr12 10179012 10179123 -133607332 + MIR SINE MIR 95 200 -62 615 305 15 0 chr12 10179544 10179718 -133606737 + MER45A DNA AcHobo 1 178 0 2368 242 54 6 chr12 10179774 10180407 -133606048 - L1MD1 LINE L1 -1 6241 5579 1604 306 30 64 chr12 10180412 10181267 -133605188 + L1M3d LINE L1 15 840 -5051 2028 166 11 16 chr12 10181365 10181732 -133604723 - LTR45B LTR ERV1 -101 388 24 2658 156 11 13 chr12 10181733 10182207 -133604248 + L1PA16 LINE L1 5693 6165 -1 3037 180 14 2 chr12 10182422 10182972 -133603483 + MER41D LTR ERV1 1 557 0 263 232 22 0 chr12 10182997 10183078 -133603377 - LTR45B-int LTR ERV1 -2 8118 7007 1654 204 68 0 chr12 10183214 10183537 -133602918 - MER101 LTR ERV1 -106 368 24 2009 141 0 26 chr12 10184089 10184393 -133602062 + AluSx SINE Alu 1 296 -16 479 286 0 14 chr12 10184573 10184720 -133601735 - MER31-int LTR ERV1 -532 4404 4260 267 239 60 0 chr12 10184741 10184808 -133601647 - MER31-int LTR ERV1 -951 5380 5310 * 319 176 14 54 chr12 10184806 10184880 -133601575 - MER31-int LTR ERV1 -980 3956 3886 1977 149 3 0 chr12 10184892 10185188 -133601267 - AluSx SINE Alu -15 297 1 965 204 184 20 chr12 10185188 10185541 -133600914 - MER31-int LTR ERV1 -1126 3810 3400 * 1136 190 82 116 chr12 10185536 10186172 -133600283 - MER31-int LTR ERV1 -1765 4566 3953 388 125 16 0 chr12 10186151 10186215 -133600240 - MER31-int LTR ERV1 -2366 2570 2506 * 350 109 0 0 chr12 10186581 10186636 -133599819 - L1PA16 LINE L1 -5 6161 6107 655 165 0 0 chr12 10186636 10186745 -133599710 - THE1-int LTR MaLR -469 1111 1003 210 370 110 7 chr12 10188216 10188362 -133598093 + MIR SINE MIR 94 254 -8 275 232 12 37 chr12 10188866 10188948 -133597507 + Charlie2 DNA MER1_type 47 126 -2736 713 278 155 23 chr12 10189239 10189934 -133596521 + L2 LINE L2 2388 3303 -10 3848 253 45 17 chr12 10190419 10192042 -133594413 + L1ME1 LINE L1 3840 5508 -751 2312 120 62 10 chr12 10192049 10192449 -133594006 + MSTA LTR MaLR 1 421 -7 950 261 16 4 chr12 10192454 10192711 -133593744 + L1ME1 LINE L1 5512 5771 -395 267 290 47 0 chr12 10192743 10192850 -133593605 + MER92A LTR ERV1 2 113 -299 2176 95 14 14 chr12 10192971 10193267 -133593188 - AluY SINE Alu -15 296 1 415 157 72 0 chr12 10193274 10193357 -133593098 + MER92A LTR ERV1 324 412 0 1055 228 48 10 chr12 10193359 10193671 -133592784 + L1ME1 LINE L1 5828 6151 -15 1661 169 50 33 chr12 10194044 10194381 -133592074 + MER61A LTR ERV1 1 343 0 859 147 42 0 chr12 10194820 10194963 -133591492 + LTR8 LTR ERV1 543 691 0 1095 167 98 20 chr12 10196057 10196111 -133590344 + L1MC2 LINE L1 6015 6063 -281 4550 99 67 40 chr12 10196111 10196869 -133589586 + LTR19C LTR ERV1 1 779 0 1095 167 98 20 chr12 10196869 10197120 -133589335 + L1MC2 LINE L1 6063 6344 0 307 138 15 15 chr12 10197206 10197271 -133589184 + (TA)n Simple_repeat Simple_repeat 1 65 0 601 200 0 62 chr12 10198236 10198319 -133588136 + MER5C DNA MER1_type 3 77 -247 2157 114 54 20 chr12 10198319 10198669 -133587786 - THE1B LTR MaLR -2 362 1 601 200 0 62 chr12 10198669 10198715 -133587740 + MER5C DNA MER1_type 77 124 -200 24 0 0 0 chr12 10199225 10199249 -133587206 + AT_rich Low_complexity Low_complexity 1 24 0 1308 167 8 0 chr12 10199336 10199581 -133586874 - L1MA5A LINE L1 0 6297 6051 1172 125 21 0 chr12 10199598 10199790 -133586665 - THE1-int LTR MaLR -1075 505 310 1690 131 49 16 chr12 10202124 10202430 -133584025 + MER61A-int LTR ERV1 525 840 -4377 24643 98 26 19 chr12 10202430 10204634 -133581821 + MER61A-int LTR ERV1 958 3300 -1917 2346 100 10 0 chr12 10204634 10204944 -133581511 + AluSp SINE Alu 1 313 0 24643 98 26 19 chr12 10204944 10206875 -133579580 + MER61A-int LTR ERV1 3300 5217 0 1230 221 40 13 chr12 10206875 10207174 -133579281 + MER61A LTR ERV1 1 307 -36 1819 189 13 2 chr12 10207191 10207588 -133578867 - L1 LINE L1 -1695 4451 4051 566 277 36 108 chr12 10207610 10207971 -133578484 - L2 LINE L2 -337 2977 2643 212 331 140 15 chr12 10208006 10208142 -133578313 - L2 LINE L2 -1144 2170 2018 2078 207 8 47 chr12 10208339 10208870 -133577585 - MER67D LTR ERV1 -4 510 1 275 216 248 52 chr12 10209685 10209838 -133576617 - MER5A DNA MER1_type 0 189 7 1268 137 9 5 chr12 10209854 10210055 -133576400 - LTR8 LTR ERV1 0 691 490 1275 178 6 86 chr12 10210055 10210393 -133576062 + LTR9 LTR ERV1 1 311 -301 37724 73 11 3 chr12 10210404 10216495 -133569960 + L1PA5 LINE L1 5 6143 -11 22 0 0 0 chr12 10216500 10216522 -133569933 + AT_rich Low_complexity Low_complexity 1 22 0 236 238 206 75 chr12 10217043 10217203 -133569252 - MER5A DNA MER1_type -7 182 2 267 211 58 10 chr12 10217602 10217706 -133568749 + (TA)n Simple_repeat Simple_repeat 1 109 0 658 230 51 51 chr12 10218711 10219173 -133567282 + L1MB2 LINE L1 810 1547 -4766 792 260 42 16 chr12 10219250 10219558 -133566897 + L1MB2 LINE L1 2019 2334 -4050 564 198 0 0 chr12 10219565 10219666 -133566789 + U6 snRNA snRNA 1 101 -6 10333 220 44 24 chr12 10219709 10221203 -133565252 + L1MB2 LINE L1 2486 3948 -2456 1865 168 0 25 chr12 10221203 10221519 -133564936 + AluJo SINE Alu 5 312 0 10333 220 44 24 chr12 10221519 10222858 -133563597 + L1MB2 LINE L1 3948 5414 -990 2167 107 3 3 chr12 10222858 10223147 -133563308 + AluSx SINE Alu 1 289 -23 10333 220 44 24 chr12 10223147 10223418 -133563037 + L1MB2 LINE L1 5414 5678 -726 2739 173 85 113 chr12 10223418 10224333 -133562122 + L1MCa LINE L1 17 906 -5520 3466 163 15 70 chr12 10224333 10224567 -133561888 + L1MB2 LINE L1 5660 5905 -502 186 43 0 0 chr12 10224567 10224590 -133561865 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1025 145 6 0 chr12 10224599 10224778 -133561677 + GA-rich Low_complexity Low_complexity 1 180 0 3466 163 15 70 chr12 10224778 10224803 -133561652 + L1MB2 LINE L1 5913 5938 -469 985 173 64 134 chr12 10224803 10225191 -133561264 + MLT1A1 LTR MaLR 1 361 -4 3466 163 15 70 chr12 10225191 10225432 -133561023 + L1MB2 LINE L1 5938 6115 -292 2409 81 3 0 chr12 10225432 10225727 -133560728 + AluSx SINE Alu 1 296 -16 3466 163 15 70 chr12 10225727 10226004 -133560451 + L1MB2 LINE L1 6115 6406 -1 1540 152 105 84 chr12 10226778 10226914 -133559541 - MLT1B LTR MaLR 0 390 258 2146 102 17 7 chr12 10226914 10227209 -133559246 - AluSg SINE Alu 0 310 13 1540 152 105 84 chr12 10227209 10227454 -133559001 - MLT1B LTR MaLR -132 258 1 247 119 0 0 chr12 10228645 10228687 -133557768 - L1P LINE L1 -1435 4711 4670 33142 76 10 3 chr12 10228687 10233365 -133553090 - L1P LINE L1 -1354 4792 83 437 261 92 8 chr12 10234479 10234609 -133551846 + MIR SINE MIR 47 187 -75 515 330 107 25 chr12 10237877 10238204 -133548251 + L2 LINE L2 2914 3267 -5 262 303 173 45 chr12 10239056 10239409 -133547046 - L2 LINE L2 -2 3270 2873 230 274 16 0 chr12 10239679 10239741 -133546714 + L2 LINE L2 3186 3248 -24 282 317 50 37 chr12 10239973 10240134 -133546321 + MIR SINE MIR 21 183 -79 249 57 0 0 chr12 10242131 10242166 -133544289 + (T)n Simple_repeat Simple_repeat 1 35 0 668 180 0 23 chr12 10242195 10242323 -133544132 - FLAM_A SINE Alu -10 132 8 1457 219 22 70 chr12 10242377 10242779 -133543676 + MLT1B LTR MaLR 8 390 0 298 284 87 83 chr12 10242998 10243216 -133543239 + MIR SINE MIR 21 239 -23 23 0 0 0 chr12 10243253 10243276 -133543179 + AT_rich Low_complexity Low_complexity 1 23 0 1509 188 11 11 chr12 10244439 10244726 -133541729 + AluJo SINE Alu 1 287 -25 324 286 208 38 chr12 10244726 10245351 -133541104 + HAL1 LINE L1 10 740 -1767 278 320 0 0 chr12 10245381 10245456 -133540999 + HAL1 LINE L1 802 876 -1631 469 122 100 22 chr12 10245738 10245828 -133540627 + FLAM_A SINE Alu 30 126 -16 935 220 74 68 chr12 10245828 10246165 -133540290 + MLT1A2 LTR MaLR 36 374 0 340 208 109 126 chr12 10246186 10246369 -133540086 + HAL1 LINE L1 1949 2128 -379 1987 81 4 0 chr12 10246502 10246763 -133539692 + AluY SINE Alu 1 262 -49 2385 52 3 10 chr12 10247600 10247907 -133538548 - AluY SINE Alu -6 305 1 482 231 202 35 chr12 10248755 10248958 -133537497 - MIR SINE MIR -5 257 21 507 237 173 109 chr12 10249415 10249773 -133536682 + L2 LINE L2 2931 3311 -2 497 235 61 10 chr12 10249903 10250050 -133536405 - MIR SINE MIR -66 142 30 566 180 9 18 chr12 10250522 10250633 -133535822 + MLT1A2 LTR MaLR 265 374 0 291 260 57 73 chr12 10252083 10252206 -133534249 + MIR3 SINE MIR 58 178 -30 366 158 13 26 chr12 10252530 10252606 -133533849 + L1M LINE L1 5315 5389 -785 7749 131 143 40 chr12 10252806 10254345 -133532110 - pTR5 LTR ERV1 0 2438 742 260 351 94 25 chr12 10254345 10254621 -133531834 - L2 LINE L2 -466 2848 2554 2053 42 0 27 chr12 10255094 10255354 -133531101 + AluY SINE Alu 51 303 -8 641 291 22 43 chr12 10255354 10255584 -133530871 + MIR SINE MIR 38 262 0 833 250 27 27 chr12 10255650 10255870 -133530585 - MSTB1 LTR MaLR -212 220 1 4469 168 44 58 chr12 10256306 10256908 -133529547 + L1MB2 LINE L1 4929 5538 -633 324 0 0 0 chr12 10256908 10256944 -133529511 + (CA)n Simple_repeat Simple_repeat 1 36 0 1703 179 0 13 chr12 10256944 10257252 -133529203 + AluJo SINE Alu 2 305 -7 4469 168 44 58 chr12 10257252 10257630 -133528825 + L1MB2 LINE L1 5537 5872 -299 1905 172 52 22 chr12 10257630 10257664 -133528791 - MLT2D LTR ERVL 0 414 382 291 28 0 0 chr12 10257664 10257700 -133528755 + (TG)n Simple_repeat Simple_repeat 2 37 0 1905 172 52 22 chr12 10257700 10258067 -133528388 - MLT2D LTR ERVL -32 382 1 4469 168 44 58 chr12 10258067 10258363 -133528092 + L1MB2 LINE L1 5872 6171 0 4903 145 72 8 chr12 10259033 10259345 -133527110 + Tigger3b DNA MER2_type 1 292 -2736 1386 210 13 23 chr12 10259345 10259645 -133526810 - AluJo SINE Alu -15 297 1 4903 145 72 8 chr12 10259645 10260203 -133526252 + Tigger3b DNA MER2_type 292 927 -304 3860 170 73 82 chr12 10260210 10261144 -133525311 - MER21A LTR ERV1 -6 925 1 789 180 43 6 chr12 10261144 10261297 -133525158 + Tigger3b DNA MER2_type 925 1083 -149 1376 160 30 122 chr12 10261299 10261797 -133524658 - MER4A LTR ERV1 0 465 157 1641 328 54 34 chr12 10261815 10262126 -133524329 - MER87-int LTR ERV1 -3756 3366 3063 1568 197 0 16 chr12 10262126 10262431 -133524024 + AluJo SINE Alu 1 300 -12 1641 328 54 34 chr12 10262431 10263283 -133523172 - MER87-int LTR ERV1 -4059 3063 2208 1504 302 73 65 chr12 10263359 10264474 -133521981 - MER87-int LTR ERV1 -5061 2061 937 338 293 108 24 chr12 10264759 10264971 -133521484 - MER87-int LTR ERV1 -6355 767 538 2115 60 4 7 chr12 10265272 10265553 -133520902 + AluY SINE Alu 29 308 -3 390 258 62 94 chr12 10265558 10265802 -133520653 - MER87-int LTR ERV1 -1497 289 54 279 305 43 28 chr12 10265929 10266070 -133520385 - MER87 LTR ERV1 0 541 399 1278 226 56 10 chr12 10266182 10266338 -133520117 - AluJo SINE Alu 0 302 155 225 0 0 0 chr12 10266338 10266363 -133520092 + (TTA)n Simple_repeat Simple_repeat 2 26 0 2476 38 0 0 chr12 10266363 10266652 -133519803 - AluY SINE Alu -22 289 1 185 0 0 39 chr12 10266654 10266680 -133519775 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1278 226 56 10 chr12 10266680 10266807 -133519648 - AluJo SINE Alu -147 155 2 2370 63 0 10 chr12 10267093 10267395 -133519060 - AluY SINE Alu -12 299 1 190 206 95 32 chr12 10267607 10267670 -133518785 - MIR SINE MIR -25 237 171 962 305 32 17 chr12 10267732 10268080 -133518375 - MLT1J LTR MaLR -78 433 81 2098 199 38 52 chr12 10268223 10268725 -133517730 - LTR42 LTR ERVL 0 495 1 382 187 13 0 chr12 10269390 10269465 -133516990 - MER4C LTR ERV1 0 465 390 229 264 0 0 chr12 10269721 10269774 -133516681 + MIR SINE MIR 204 256 -6 337 313 55 43 chr12 10270669 10270832 -133515623 - MIR SINE MIR -47 215 51 309 330 0 0 chr12 10270943 10271031 -133515424 + (TG)n Simple_repeat Simple_repeat 1 88 0 270 0 0 0 chr12 10271413 10271443 -133515012 + (CA)n Simple_repeat Simple_repeat 1 30 0 315 0 0 0 chr12 10271499 10271534 -133514921 + (CA)n Simple_repeat Simple_repeat 1 35 0 382 247 45 28 chr12 10272026 10272169 -133514286 + MLT1C LTR MaLR 28 180 -287 281 100 20 0 chr12 10272169 10272219 -133514236 + (CA)n Simple_repeat Simple_repeat 2 52 0 385 153 153 46 chr12 10273151 10273282 -133513173 - L1ME4a LINE L1 -11 6110 5966 210 37 0 0 chr12 10273290 10273317 -133513138 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 820 213 0 0 chr12 10273449 10273599 -133512856 - FRAM SINE Alu -31 145 1 575 335 111 12 chr12 10273683 10274344 -133512111 - L2 LINE L2 -4 3309 2557 359 355 89 0 chr12 10274977 10275180 -133511275 - MIR SINE MIR -29 233 13 511 284 58 36 chr12 10275714 10275939 -133510516 + L2 LINE L2 2732 2961 -353 2561 209 25 9 chr12 10275945 10276505 -133509950 + LTR24B LTR ERV1 1 569 -7 609 284 78 19 chr12 10276507 10276775 -133509680 + L2 LINE L2 3012 3295 -18 265 340 21 32 chr12 10277003 10277097 -133509358 + MIR SINE MIR 21 113 -95 577 225 60 28 chr12 10277299 10277481 -133508974 + L1MC5 LINE L1 7711 7898 -63 2344 124 0 3 chr12 10277506 10277868 -133508587 + L1PA13 LINE L1 5802 6162 -1 432 275 62 27 chr12 10277871 10278204 -133508251 + L1MEc LINE L1 345 1716 -770 1981 118 61 28 chr12 10278251 10278614 -133507841 + THE1C LTR MaLR 1 375 0 298 294 23 40 chr12 10278767 10278836 -133507619 + L1MC/D LINE L1 5629 5698 -2110 1218 111 0 0 chr12 10278836 10279007 -133507448 + L1PA10 LINE L1 5997 6167 -1 298 294 23 40 chr12 10279007 10279114 -133507341 + L1MC/D LINE L1 5698 5802 -2006 7387 161 22 27 chr12 10279197 10279339 -133507116 + L1PB1 LINE L1 3705 3846 -2305 1633 167 3 11 chr12 10279339 10279621 -133506834 + AluSx SINE Alu 1 280 -32 7387 161 22 27 chr12 10279621 10281941 -133504514 + L1PB1 LINE L1 3846 6145 -6 22 0 0 0 chr12 10281942 10281964 -133504491 + AT_rich Low_complexity Low_complexity 1 22 0 249 271 14 29 chr12 10282186 10282256 -133504199 + L2 LINE L2 3154 3222 -50 1569 158 30 3 chr12 10282731 10283028 -133503427 + AluJb SINE Alu 1 305 -7 321 211 89 106 chr12 10283217 10283454 -133503001 + L1MEd LINE L1 869 1101 -5018 212 349 0 24 chr12 10284240 10284323 -133502132 - MER5A DNA MER1_type -50 139 59 3153 77 2 0 chr12 10284778 10285194 -133501261 + L1PA5 LINE L1 5738 6154 0 180 111 0 0 chr12 10285211 10285238 -133501217 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 277 368 108 40 chr12 10286499 10286819 -133499636 - L2 LINE L2 -424 2890 2540 2335 83 0 13 chr12 10286819 10287119 -133499336 - AluSg SINE Alu -14 296 1 277 368 108 40 chr12 10287119 10287170 -133499285 - L2 LINE L2 -774 2540 2494 260 340 93 0 chr12 10287192 10287289 -133499166 - L2 LINE L2 -284 3029 2924 * 688 274 66 68 chr12 10287260 10287554 -133498901 - L2 LINE L2 -756 2558 2264 1881 161 13 10 chr12 10287554 10287865 -133498590 + AluJb SINE Alu 1 312 0 688 274 66 68 chr12 10287865 10287950 -133498505 - L2 LINE L2 -1050 2264 2180 233 213 21 0 chr12 10289442 10289489 -133496966 + CT-rich Low_complexity Low_complexity 2 49 0 1619 184 14 0 chr12 10289809 10290092 -133496363 - AluJo SINE Alu -25 287 1 793 298 48 42 chr12 10290188 10290621 -133495834 - LTR16A1 LTR ERVL 0 457 22 2346 76 0 13 chr12 10290842 10291143 -133495312 + AluY SINE Alu 1 297 -14 184 326 174 22 chr12 10293795 10293979 -133492476 - L2 LINE L2 -1244 2070 1859 22 35 0 0 chr12 10294215 10294244 -133492211 + AT_rich Low_complexity Low_complexity 1 29 0 251 308 154 45 chr12 10295364 10295520 -133490935 - MIR SINE MIR -77 185 13 36 70 0 0 chr12 10295608 10295679 -133490776 + AT_rich Low_complexity Low_complexity 1 71 0 755 153 175 34 chr12 10296025 10296202 -133490253 - MER3 DNA MER1_type -1 208 7 23 0 0 0 chr12 10297228 10297251 -133489204 + AT_rich Low_complexity Low_complexity 1 23 0 7463 59 1 3 chr12 10297415 10299124 -133487331 - L1PA5 LINE L1 -13 6141 4418 6982 60 2 0 chr12 10299125 10300549 -133485906 + L1PA7 LINE L1 4728 6153 -1 36 23 0 0 chr12 10300622 10300665 -133485790 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr12 10300885 10300907 -133485548 + AT_rich Low_complexity Low_complexity 1 22 0 669 222 70 35 chr12 10302062 10302233 -133484222 - MIR SINE MIR 0 262 86 2006 111 11 0 chr12 10302279 10302558 -133483897 - AluSx SINE Alu -26 286 5 222 339 57 8 chr12 10302639 10302763 -133483692 - L2 LINE L2 -4 3309 3180 1171 81 6 6 chr12 10302914 10303074 -133483381 + L1PA15 LINE L1 5997 6156 -9 287 333 14 0 chr12 10303606 10303675 -133482780 - MIR SINE MIR -183 79 10 24 0 0 0 chr12 10303880 10303904 -133482551 + AT_rich Low_complexity Low_complexity 1 24 0 2092 95 14 10 chr12 10304691 10304987 -133481468 - AluSq SINE Alu -16 297 1 1927 155 3 10 chr12 10305315 10305618 -133480837 + AluJo SINE Alu 1 301 -11 448 155 0 21 chr12 10305635 10305732 -133480723 + GA-rich Low_complexity Low_complexity 4 98 0 201 297 0 40 chr12 10305840 10305941 -133480514 + (CATATA)n Simple_repeat Simple_repeat 6 102 0 206 225 0 0 chr12 10306564 10306604 -133479851 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 420 225 23 31 chr12 10306661 10306790 -133479665 - MER94 DNA DNA 0 134 7 233 191 96 85 chr12 10306836 10306930 -133479525 - L2 LINE L2 -94 3219 3125 445 252 26 0 chr12 10306964 10307079 -133479376 + MER58 DNA MER1_type 1 118 -97 213 311 0 0 chr12 10307137 10307182 -133479273 - L2 LINE L2 -256 3057 3013 263 140 120 0 chr12 10307237 10307287 -133479168 - MER5A DNA MER1_type 0 189 134 22 56 0 0 chr12 10307500 10307536 -133478919 + AT_rich Low_complexity Low_complexity 1 36 0 306 275 48 24 chr12 10308083 10308250 -133478205 - L1M4 LINE L1 -2947 3199 3029 253 138 52 0 chr12 10308298 10308356 -133478099 - L1MB2 LINE L1 0 6171 6111 189 0 0 0 chr12 10308384 10308405 -133478050 + (TTTTTA)n Simple_repeat Simple_repeat 1 21 0 190 314 186 0 chr12 10308494 10308580 -133477875 - MIR SINE MIR 0 262 161 232 209 30 45 chr12 10308612 10308679 -133477776 + MER92C LTR ERV1 280 345 -209 483 272 16 52 chr12 10312142 10312333 -133474122 - L1MC5 LINE L1 -589 7372 7189 809 192 48 6 chr12 10312345 10312512 -133473943 - MER20 DNA MER1_type -5 214 41 546 57 0 0 chr12 10312745 10312815 -133473640 + (TG)n Simple_repeat Simple_repeat 2 71 0 249 283 183 22 chr12 10316626 10316806 -133469649 + MIR SINE MIR 48 256 -6 222 328 0 0 chr12 10316909 10316967 -133469488 - L2 LINE L2 0 3272 3215 337 242 0 0 chr12 10317110 10317176 -133469279 + MER5A DNA MER1_type 1 66 -123 2316 86 0 10 chr12 10317189 10317492 -133468963 + AluY SINE Alu 1 300 -11 214 200 0 0 chr12 10317564 10317604 -133468851 + (TA)n Simple_repeat Simple_repeat 2 41 0 2193 60 0 11 chr12 10318260 10318542 -133467913 - AluY SINE Alu -11 300 22 362 294 32 81 chr12 10318542 10318790 -133467665 - HAL1 LINE L1 -2121 386 151 391 356 22 46 chr12 10318795 10319163 -133467292 + L2 LINE L2 2615 2973 -341 206 219 31 47 chr12 10319452 10319516 -133466939 + MIR SINE MIR 74 136 -126 258 318 34 45 chr12 10321916 10322095 -133464360 - MIR SINE MIR 0 262 86 263 135 16 95 chr12 10322774 10322900 -133463555 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 36 40 0 0 chr12 10322979 10323029 -133463426 + AT_rich Low_complexity Low_complexity 1 50 0 272 289 48 29 chr12 10323746 10323850 -133462605 - L2 LINE L2 -37 3276 3171 2152 165 71 13 chr12 10323875 10323931 -133462524 - MSTA LTR MaLR -12 416 365 2217 125 0 3 chr12 10323931 10324242 -133462213 + AluSq SINE Alu 1 310 -3 2152 165 71 13 chr12 10324242 10324578 -133461877 - MSTA LTR MaLR -63 365 1 748 319 39 0 chr12 10324609 10324838 -133461617 - MIR SINE MIR -2 260 23 184 0 97 0 chr12 10324926 10324957 -133461498 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 42748 32 23 1 chr12 10324957 10330969 -133455486 - L1PA3 LINE L1 -10 6145 2 317 185 7 206 chr12 10331216 10331362 -133455093 - MER105 DNA DNA -86 118 2 448 302 37 26 chr12 10332031 10332220 -133454235 - LTR67 LTR ERVL -338 219 29 21 0 0 0 chr12 10334124 10334145 -133452310 + AT_rich Low_complexity Low_complexity 1 21 0 863 199 30 102 chr12 10334156 10334341 -133452114 + L1MA6 LINE L1 6053 6250 -50 225 0 0 0 chr12 10334341 10334366 -133452089 + (TG)n Simple_repeat Simple_repeat 2 26 0 863 199 30 102 chr12 10334366 10334394 -133452061 + L1MA6 LINE L1 6250 6248 -52 2074 140 0 7 chr12 10334394 10334694 -133451761 - AluSx SINE Alu -14 298 1 863 199 30 102 chr12 10334694 10334745 -133451710 + L1MA6 LINE L1 6247 6300 0 2273 108 0 0 chr12 10335449 10335755 -133450700 + AluSg SINE Alu 1 306 -4 262 278 78 53 chr12 10336399 10336427 -133450028 - L1ME LINE L1 -311 5810 5784 27 0 0 0 chr12 10336427 10336454 -133450001 + AT_rich Low_complexity Low_complexity 1 27 0 262 278 78 53 chr12 10336454 10336680 -133449775 - L1ME LINE L1 -337 5784 5523 24 32 0 0 chr12 10336847 10336878 -133449577 + AT_rich Low_complexity Low_complexity 1 31 0 2140 124 0 6 chr12 10336919 10337233 -133449222 + AluSx SINE Alu 1 312 0 558 348 6 11 chr12 10337277 10337458 -133448997 - MIR SINE MIR -78 184 5 21 0 0 0 chr12 10338563 10338584 -133447871 + AT_rich Low_complexity Low_complexity 1 21 0 254 279 123 13 chr12 10338745 10338840 -133447615 + MIR SINE MIR 7 112 -96 21 0 0 0 chr12 10339282 10339303 -133447152 + AT_rich Low_complexity Low_complexity 1 21 0 1692 168 41 0 chr12 10340537 10340829 -133445626 + AluJb SINE Alu 1 304 -8 469 313 54 75 chr12 10340879 10341211 -133445244 - L1MC/D LINE L1 -2163 5645 5321 534 303 69 6 chr12 10342006 10342181 -133444274 + MIR SINE MIR 16 201 -61 3742 106 9 110 chr12 10342416 10342700 -133443755 - MER4A LTR ERV1 0 664 353 2184 127 0 0 chr12 10342700 10343000 -133443455 + AluSx SINE Alu 1 300 -12 3742 106 9 110 chr12 10343000 10343453 -133443002 - MER4A LTR ERV1 -311 353 1 216 191 0 0 chr12 10344029 10344071 -133442384 + L2 LINE L2 3271 3312 -1 2345 80 3 26 chr12 10344077 10344389 -133442066 + AluSx SINE Alu 1 305 -7 25 65 0 0 chr12 10345344 10345390 -133441065 + AT_rich Low_complexity Low_complexity 1 46 0 2442 128 163 22 chr12 10346547 10347006 -133439449 - MER1A DNA MER1_type -5 524 1 259 249 54 108 chr12 10347016 10347201 -133439254 + MIR SINE MIR 5 179 -83 * 503 272 133 22 chr12 10347199 10347379 -133439076 - MIR SINE MIR -32 230 31 21 36 0 0 chr12 10347771 10347799 -133438656 + AT_rich Low_complexity Low_complexity 1 28 0 285 182 0 0 chr12 10347806 10347861 -133438594 + (TA)n Simple_repeat Simple_repeat 2 56 0 2031 44 0 0 chr12 10348016 10348265 -133438190 + L1PA3 LINE L1 5906 6154 -1 399 259 188 18 chr12 10349631 10349855 -133436600 - L1ME4a LINE L1 -2 6119 5858 1599 192 3 14 chr12 10350061 10350358 -133436097 + AluSx SINE Alu 1 294 -18 213 196 0 0 chr12 10350361 10350407 -133436048 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 231 36 0 0 chr12 10350409 10350437 -133436018 + (CA)n Simple_repeat Simple_repeat 2 29 0 355 172 62 130 chr12 10350744 10350873 -133435582 - L1MC4 LINE L1 0 8042 7929 381 43 0 0 chr12 10350873 10350920 -133435535 + (CA)n Simple_repeat Simple_repeat 2 48 0 355 172 62 130 chr12 10350920 10350982 -133435473 - L1MC4 LINE L1 -113 7929 7864 654 115 8 41 chr12 10350990 10351112 -133435343 + MER4C LTR ERV1 1 118 -347 657 308 62 47 chr12 10351113 10351577 -133434878 - L1M4 LINE L1 -2884 3262 2792 23 33 0 0 chr12 10352267 10352297 -133434158 + AT_rich Low_complexity Low_complexity 1 30 0 2472 60 0 3 chr12 10352351 10352649 -133433806 + AluY SINE Alu 1 297 -14 676 213 0 0 chr12 10352866 10352993 -133433462 + AluJb SINE Alu 175 301 -11 561 337 89 47 chr12 10353035 10353584 -133432871 - HAL1b LINE L1 -756 592 21 306 0 0 0 chr12 10355477 10355511 -133430944 + (TG)n Simple_repeat Simple_repeat 2 35 0 325 244 32 32 chr12 10355519 10355642 -133430813 + MIR SINE MIR 139 261 -1 2015 154 11 8 chr12 10356229 10356586 -133429869 - Tigger3b DNA MER2_type 0 1231 874 3716 134 34 0 chr12 10356587 10357204 -133429251 - Tigger3b DNA MER2_type -593 638 1 213 65 0 0 chr12 10359471 10359502 -133426953 + (CAA)n Simple_repeat Simple_repeat 3 33 0 208 146 0 24 chr12 10363002 10363043 -133423412 + (TTG)n Simple_repeat Simple_repeat 3 42 0 26 0 0 0 chr12 10363594 10363620 -133422835 + AT_rich Low_complexity Low_complexity 1 26 0 254 309 115 14 chr12 10365730 10365869 -133420586 + MER5A DNA MER1_type 35 187 -2 2177 134 0 0 chr12 10367048 10367339 -133419116 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr12 10367364 10367392 -133419063 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 10367450 10367471 -133418984 + AT_rich Low_complexity Low_complexity 1 21 0 1547 159 90 56 chr12 10368024 10368401 -133418054 - MLT1B LTR MaLR 0 390 1 254 284 92 46 chr12 10368855 10368964 -133417491 - L2 LINE L2 -1 3312 3199 32 75 0 0 chr12 10369459 10369526 -133416929 + AT_rich Low_complexity Low_complexity 1 67 0 1339 209 118 41 chr12 10369781 10370420 -133416035 + SATR1 Satellite Satellite 1 688 -131 3885 99 3 8 chr12 10370431 10371028 -133415427 - HERVE LTR ERV1 -3967 3846 3253 1324 209 100 74 chr12 10371123 10371988 -133414467 + SATR1 Satellite Satellite 1 888 -131 3911 103 2 8 chr12 10371999 10372601 -133413854 - HERVE LTR ERV1 -3967 3846 3249 327 267 140 100 chr12 10373668 10374086 -133412369 + L1MDa LINE L1 527 962 -5578 1088 135 60 0 chr12 10374606 10374806 -133411649 - L1MA2 LINE L1 0 6304 6093 1985 146 3 29 chr12 10375590 10375906 -133410549 - AluSx SINE Alu 0 312 5 2640 192 41 10 chr12 10377348 10377957 -133408498 - L1MA9 LINE L1 -110 6202 5575 184 358 36 29 chr12 10378845 10378982 -133407473 + MIR SINE MIR 52 189 -73 324 286 0 19 chr12 10379378 10379483 -133406972 + (TATATG)n Simple_repeat Simple_repeat 4 106 0 220 277 0 0 chr12 10379835 10379882 -133406573 + polypurine Low_complexity Low_complexity 2 48 0 1061 233 111 13 chr12 10380479 10380597 -133405858 + MLT1C LTR MaLR 53 158 -309 306 87 0 0 chr12 10380597 10380643 -133405812 + (CA)n Simple_repeat Simple_repeat 2 47 0 1061 233 111 13 chr12 10380643 10380902 -133405553 + MLT1C LTR MaLR 158 467 0 978 168 38 43 chr12 10381735 10381944 -133404511 + AluJo SINE Alu 104 311 -1 1465 238 28 16 chr12 10381945 10382382 -133404073 - L1M4 LINE L1 -1921 4225 3784 234 0 0 0 chr12 10382405 10382431 -133404024 + (CA)n Simple_repeat Simple_repeat 1 26 0 582 237 102 14 chr12 10382444 10382727 -133403728 + L1M4 LINE L1 4301 4608 -1538 18661 27 5 0 chr12 10382836 10385846 -133400609 + L1PA2 LINE L1 3131 6152 -3 955 217 45 25 chr12 10385910 10386154 -133400301 - MIR SINE MIR -2 260 12 4517 113 19 9 chr12 10386369 10387056 -133399399 + L1PA14 LINE L1 5468 6161 0 331 204 68 0 chr12 10387959 10388047 -133398408 - LTR50 LTR ERVL -1 794 701 2270 83 6 55 chr12 10389031 10389357 -133397098 - AluSq SINE Alu -1 312 3 689 284 114 8 chr12 10389831 10390067 -133396388 + MER110-int LTR ERV1 2298 2558 -2089 465 228 91 59 chr12 10390106 10390325 -133396130 + MER110-int LTR ERV1 2639 2864 -1783 612 266 72 14 chr12 10390757 10390979 -133395476 + MER106A DNA MER1_type 1 235 -1 234 372 0 12 chr12 10391906 10391992 -133394463 - L3 LINE CR1 -1 1576 1492 1372 218 119 73 chr12 10392074 10392569 -133393886 + MLT1H LTR MaLR 32 549 0 2167 97 10 7 chr12 10392943 10393242 -133393213 + AluSx SINE Alu 1 300 -12 392 301 16 8 chr12 10393528 10393651 -133392804 - L2 LINE L2 -6 3307 3184 319 236 154 32 chr12 10394260 10394383 -133392072 - L2 LINE L2 0 3313 3176 21 0 0 0 chr12 10394945 10394966 -133391489 + AT_rich Low_complexity Low_complexity 1 21 0 3730 170 54 49 chr12 10395572 10395701 -133390754 - L1MA9 LINE L1 -2 6310 6183 180 77 0 0 chr12 10395701 10395727 -133390728 + (TG)n Simple_repeat Simple_repeat 1 26 0 3730 170 54 49 chr12 10395727 10396436 -133390019 - L1MA9 LINE L1 -129 6183 5468 449 316 48 84 chr12 10397902 10398428 -133388027 - MER34 LTR ERV1 -35 507 1 192 227 0 23 chr12 10398468 10398512 -133387943 + MIR SINE MIR 110 152 -110 260 333 94 36 chr12 10399637 10399829 -133386626 + L2 LINE L2 2555 2757 -557 336 219 114 0 chr12 10401015 10401120 -133385335 + MER112 DNA MER1_type 136 252 -8 209 285 128 45 chr12 10402267 10402446 -133384009 - MIR3 SINE MIR -5 203 10 494 387 5 5 chr12 10402908 10403112 -133383343 + MIR SINE MIR 2 205 -57 8127 54 2 1 chr12 10403860 10404825 -133381630 + LTR5 LTR ERVK 1 966 -3 202 139 0 23 chr12 10405005 10405048 -133381407 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 251 200 25 75 chr12 10405379 10405459 -133380996 - L2 LINE L2 -1 3312 3237 28 71 0 0 chr12 10405994 10406050 -133380405 + AT_rich Low_complexity Low_complexity 1 56 0 2084 66 31 45 chr12 10406821 10407131 -133379324 - AluSp SINE Alu 0 306 1 484 282 46 17 chr12 10407228 10407402 -133379053 + MIR SINE MIR 84 262 0 341 335 84 17 chr12 10407654 10407833 -133378622 + L2 LINE L2 2699 2889 -425 800 268 84 86 chr12 10407887 10408235 -133378220 + L2 LINE L2 2849 3197 -116 4637 61 2 0 chr12 10408235 10408822 -133377633 - L1PA6 LINE L1 -1 6153 5566 800 268 84 86 chr12 10408822 10408939 -133377516 + L2 LINE L2 3197 3313 0 444 89 36 18 chr12 10410044 10410156 -133376299 + (TA)n Simple_repeat Simple_repeat 1 114 0 1780 168 24 3 chr12 10410156 10410448 -133376007 - AluJo SINE Alu -14 298 1 264 30 0 0 chr12 10410608 10410641 -133375814 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 1093 67 11 28 chr12 10410643 10410823 -133375632 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 266 174 0 0 chr12 10410834 10410880 -133375575 - MER66B LTR ERV1 -146 340 295 625 182 28 7 chr12 10411539 10411682 -133374773 - MER96B DNA MER1_type? 0 417 272 7215 66 2 0 chr12 10411998 10413697 -133372758 - L1PA5 LINE L1 0 6154 4435 1103 113 141 0 chr12 10413752 10413937 -133372518 + L1P LINE L1 11 221 -5925 1316 171 228 28 chr12 10464004 10464472 -133321983 - MER4E LTR ERV1 -15 764 1 298 239 60 0 chr12 10464488 10464555 -133321900 + LOR1a LTR ERV1 282 352 -145 439 313 78 0 chr12 10465118 10465335 -133321120 + LTR33 LTR ERVL 264 497 -24 2181 114 107 17 chr12 10465521 10465932 -133320523 - LTR7 LTR ERV1 -2 448 1 632 178 22 60 chr12 10465933 10466118 -133320337 - HERVH LTR ERV1 -1 7712 7535 252 157 39 0 chr12 10466120 10466171 -133320284 - L1M1 LINE L1 -582 5721 5669 1113 219 43 24 chr12 10466229 10466569 -133319886 + L1MA4 LINE L1 5847 6198 -106 2389 182 12 10 chr12 10466569 10467063 -133319392 - HERVH LTR ERV1 -652 7061 6567 462 256 69 44 chr12 10467119 10467279 -133319176 + MIR SINE MIR 53 216 -46 1874 124 65 22 chr12 10467305 10467675 -133318780 - HERVH LTR ERV1 -1559 6154 5769 1100 140 38 0 chr12 10467661 10467847 -133318608 - HERVH LTR ERV1 -3033 4680 4488 * 3037 145 0 10 chr12 10467836 10468346 -133318109 - HERVH LTR ERV1 -3708 4005 3501 335 302 147 70 chr12 10470128 10470424 -133316031 + L2 LINE L2 793 1125 -2189 1247 207 50 47 chr12 10470424 10470751 -133315704 + AluJo SINE Alu 1 312 0 335 302 147 70 chr12 10470751 10470828 -133315627 + L2 LINE L2 1125 1195 -2119 1232 312 70 36 chr12 10470922 10471830 -133314625 + L2 LINE L2 1475 2413 -901 455 259 53 103 chr12 10471856 10472066 -133314389 - MIR SINE MIR -11 251 32 2372 132 28 8 chr12 10472066 10472423 -133314032 + THE1B LTR MaLR 1 364 0 10890 104 27 1 chr12 10472423 10473964 -133312491 + THE1B-int LTR MaLR 1 1580 0 2335 116 30 25 chr12 10473964 10474326 -133312129 + THE1B LTR MaLR 1 364 0 455 259 53 103 chr12 10474326 10474376 -133312079 - MIR SINE MIR -227 35 2 418 335 19 12 chr12 10474955 10475116 -133311339 + L2 LINE L2 3151 3312 -1 234 191 0 44 chr12 10475122 10475190 -133311265 + (TAAA)n Simple_repeat Simple_repeat 3 67 0 201 74 0 0 chr12 10476123 10476150 -133310305 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 948 138 12 31 chr12 10477552 10477712 -133308743 + AluSg/x SINE Alu 154 310 0 3147 163 25 33 chr12 10479891 10480498 -133305957 - L1PB4 LINE L1 -10 6146 5545 194 150 25 0 chr12 10481332 10481372 -133305083 + (TATG)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr12 10481555 10481578 -133304877 + AT_rich Low_complexity Low_complexity 1 23 0 929 148 448 20 chr12 10482205 10482562 -133303893 - MER4B LTR ERV1 -99 511 2 8776 135 50 24 chr12 10482563 10483767 -133302688 - MER4B-int LTR ERV1 0 6758 5440 2095 134 0 0 chr12 10483767 10484058 -133302397 + AluSx SINE Alu 1 291 -21 8776 135 50 24 chr12 10484058 10484975 -133301480 - MER4B-int LTR ERV1 -1318 5440 4549 185 59 59 0 chr12 10484975 10485009 -133301446 + T-rich Low_complexity Low_complexity 2 37 0 1360 119 0 0 chr12 10485034 10485227 -133301228 - AluSq SINE Alu 0 313 121 803 78 9 0 chr12 10485227 10485343 -133301112 + THE1C-int LTR MaLR 1463 1579 -1 839 132 16 8 chr12 10485344 10485473 -133300982 + THE1C LTR MaLR 1 130 -245 7593 27 2 0 chr12 10485473 10486615 -133299840 + L1PA4 LINE L1 5012 6155 0 10747 146 25 3 chr12 10486615 10488394 -133298061 + Tigger1 DNA MER2_type 602 2418 0 213 374 87 0 chr12 10488406 10488521 -133297934 - MIR SINE MIR -136 126 2 298 297 159 33 chr12 10488941 10489123 -133297332 - MIR SINE MIR 0 262 58 226 291 23 12 chr12 10489843 10489929 -133296526 - MIR SINE MIR -108 154 68 623 341 57 43 chr12 10491124 10491561 -133294894 - L2 LINE L2 -34 3279 2837 23 54 0 0 chr12 10491634 10491671 -133294784 + AT_rich Low_complexity Low_complexity 1 37 0 306 206 0 0 chr12 10492043 10492116 -133294339 + (CA)n Simple_repeat Simple_repeat 2 74 0 404 314 40 40 chr12 10492997 10493223 -133293232 + L2 LINE L2 3088 3313 0 351 0 0 0 chr12 10495885 10495924 -133290531 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2408 60 0 7 chr12 10499127 10499426 -133287029 - AluY SINE Alu -14 297 1 2639 33 0 0 chr12 10499686 10499986 -133286469 - AluY SINE Alu -10 301 2 1839 168 7 7 chr12 10500878 10501182 -133285273 + AluJb SINE Alu 2 305 -7 4229 166 41 43 chr12 10501247 10502023 -133284432 - LTR1B LTR ERV1 0 826 51 1353 65 0 0 chr12 10502023 10502193 -133284262 - L1PA5 LINE L1 -12 6142 5973 4229 166 41 43 chr12 10502193 10502244 -133284211 - LTR1B LTR ERV1 -775 51 1 253 292 72 77 chr12 10502365 10502574 -133283881 - L2 LINE L2 -2 3311 3104 373 297 34 0 chr12 10502796 10502914 -133283541 - MIR SINE MIR -123 139 18 2139 310 83 66 chr12 10503326 10504019 -133282436 - L2 LINE L2 -778 2536 1857 2525 68 0 0 chr12 10504019 10504330 -133282125 + AluY SINE Alu 1 311 0 2139 310 83 66 chr12 10504330 10505337 -133281118 - L2 LINE L2 -1457 1857 806 567 212 23 15 chr12 10505348 10505480 -133280975 + MER3 DNA MER1_type 1 133 -76 182 61 0 30 chr12 10505481 10505514 -133280941 + (TTTAA)n Simple_repeat Simple_repeat 1 32 0 491 313 81 26 chr12 10505593 10505865 -133280590 - L2 LINE L2 -2521 793 507 803 149 242 173 chr12 10506140 10506590 -133279865 + LTR12 LTR ERV1 1 481 -233 273 192 0 0 chr12 10507165 10507217 -133279238 - MLT1D LTR MaLR 0 505 454 324 64 0 0 chr12 10507400 10507447 -133279008 + (TC)n Simple_repeat Simple_repeat 2 48 0 297 0 0 0 chr12 10507447 10507480 -133278975 + (CA)n Simple_repeat Simple_repeat 1 33 0 367 299 28 9 chr12 10508705 10508832 -133277623 - MIR SINE MIR -62 146 23 1273 51 0 0 chr12 10509646 10509803 -133276652 - L1PA3 LINE L1 -3 6152 5996 183 236 42 56 chr12 10511223 10511295 -133275160 - MER5A DNA MER1_type 0 189 119 27 96 0 0 chr12 10511524 10511607 -133274848 + AT_rich Low_complexity Low_complexity 1 83 0 237 278 14 14 chr12 10513085 10513157 -133273298 + Charlie2b DNA MER1_type 599 670 -2112 419 277 43 18 chr12 10513242 10513388 -133273067 - MIR SINE MIR -63 145 33 594 230 48 62 chr12 10513423 10513632 -133272823 + Charlie2a DNA MER1_type 1466 1671 -1191 380 219 73 0 chr12 10513645 10513768 -133272687 + Charlie2a DNA MER1_type 2729 2860 -2 27 62 0 0 chr12 10513802 10513850 -133272605 + AT_rich Low_complexity Low_complexity 1 48 0 1179 214 20 3 chr12 10513880 10514175 -133272280 - L1MA4 LINE L1 -6 6294 5995 776 247 13 34 chr12 10515390 10515625 -133270830 - MLT2D LTR ERVL -184 230 1 219 237 0 17 chr12 10516649 10516708 -133269747 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 * 224 174 22 0 chr12 10516666 10516712 -133269743 + (TA)n Simple_repeat Simple_repeat 1 47 0 2266 95 0 10 chr12 10517165 10517461 -133268994 + AluSx SINE Alu 3 295 -17 200 261 0 0 chr12 10519078 10519124 -133267331 + L2 LINE L2 3256 3301 -12 363 167 83 6 chr12 10519184 10519340 -133267115 + (TA)n Simple_repeat Simple_repeat 2 169 0 36 0 0 0 chr12 10519811 10519847 -133266608 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr12 10519990 10520018 -133266437 + AT_rich Low_complexity Low_complexity 1 28 0 186 133 0 0 chr12 10521428 10521458 -133264997 + (A)n Simple_repeat Simple_repeat 1 30 0 609 275 46 118 chr12 10521640 10522142 -133264313 + HAL1 LINE L1 1123 1588 -919 1861 144 3 13 chr12 10522440 10522739 -133263716 + AluJb SINE Alu 6 301 -11 2332 98 0 0 chr12 10522873 10523179 -133263276 + AluY SINE Alu 1 306 -5 1817 211 28 6 chr12 10523938 10524299 -133262156 + MLT2D LTR ERVL 1 369 -45 240 133 0 0 chr12 10524320 10524365 -133262090 + LTR66 LTR ERVL 394 438 -172 613 333 6 0 chr12 10524429 10524600 -133261855 + MIR SINE MIR 2 173 -89 25 31 0 0 chr12 10524600 10524632 -133261823 + AT_rich Low_complexity Low_complexity 1 32 0 816 261 62 54 chr12 10524635 10524881 -133261574 - L1MC5 LINE L1 -58 7903 7660 1583 233 57 70 chr12 10524881 10525543 -133260912 - MLT1E1 LTR MaLR 0 654 1 816 261 62 54 chr12 10525543 10525816 -133260639 - L1MC5 LINE L1 -301 7660 7380 22 56 0 0 chr12 10526504 10526540 -133259915 + AT_rich Low_complexity Low_complexity 1 36 0 2544 60 3 0 chr12 10527244 10527545 -133258910 - AluSp SINE Alu -9 304 3 24 32 0 0 chr12 10527979 10528010 -133258445 + AT_rich Low_complexity Low_complexity 1 31 0 366 287 15 15 chr12 10528265 10528401 -133258054 + T-rich Low_complexity Low_complexity 3 138 0 541 199 15 0 chr12 10528692 10528823 -133257632 + CT-rich Low_complexity Low_complexity 2 134 0 1741 174 10 7 chr12 10528833 10529143 -133257312 - AluJb SINE Alu -1 311 1 33 25 0 0 chr12 10529494 10529534 -133256921 + AT_rich Low_complexity Low_complexity 1 40 0 383 347 101 10 chr12 10529906 10530203 -133256252 - L2 LINE L2 -614 2700 2377 26 50 0 0 chr12 10530723 10530763 -133255692 + AT_rich Low_complexity Low_complexity 1 40 0 826 182 0 0 chr12 10530937 10531085 -133255370 + L1PB4 LINE L1 6006 6153 -3 1473 200 40 45 chr12 10531311 10531520 -133254935 - L1MA10 LINE L1 -1 6333 6125 2440 93 0 0 chr12 10531520 10531821 -133254634 - AluSx SINE Alu -11 301 1 1473 200 40 45 chr12 10531821 10532011 -133254444 - L1MA10 LINE L1 -209 6125 5936 2488 132 37 30 chr12 10532092 10532523 -133253932 - MER61C LTR ERV1 0 434 1 1901 170 121 7 chr12 10532850 10533262 -133253193 + LOR1b LTR ERV1 1 459 -2 2438 114 13 10 chr12 10533437 10533959 -133252496 - MER61C-int LTR ERV1 0 5217 4657 357 118 0 0 chr12 10533949 10534000 -133252455 - MER61C-int LTR ERV1 -510 4707 4657 * 20237 96 11 10 chr12 10533990 10536892 -133249563 - MER61C-int LTR ERV1 -510 4707 1803 2124 135 3 0 chr12 10536895 10537192 -133249263 - AluSx SINE Alu -14 298 1 373 164 0 0 chr12 10537232 10537299 -133249156 + LTR30 LTR ERV1 552 618 -104 1260 209 44 39 chr12 10537321 10537825 -133248630 - LTR10B LTR ERV1 -5 542 1 22850 218 14 23 chr12 10537861 10545254 -133241201 - HERVI LTR ERV1 -31 7754 454 1002 212 89 27 chr12 10545277 10545570 -133240885 - HERVI LTR ERV1 -6331 318 8 1250 173 171 72 chr12 10545574 10546072 -133240383 - LTR10B LTR ERV1 0 547 1 2313 90 41 6 chr12 10546074 10546439 -133240016 - MER61A-int LTR ERV1 -3429 1788 1411 2759 199 52 13 chr12 10546523 10547203 -133239252 - MER61A-int LTR ERV1 -4510 707 2 1281 192 93 31 chr12 10547204 10547527 -133238928 - MER61A LTR ERV1 0 343 1 1142 193 13 17 chr12 10547887 10548126 -133238329 + MLT1A1 LTR MaLR 1 238 -127 357 149 0 0 chr12 10548616 10548683 -133237772 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 6123 104 12 3 chr12 10548895 10550536 -133235919 + L1PA8 LINE L1 4511 6164 -8 198 141 31 16 chr12 10550696 10550760 -133235695 + (TAAA)n Simple_repeat Simple_repeat 2 66 0 21 0 0 0 chr12 10550873 10550894 -133235561 + AT_rich Low_complexity Low_complexity 1 21 0 187 30 30 30 chr12 10551109 10551142 -133235313 + (TAAAAA)n Simple_repeat Simple_repeat 5 37 0 793 134 0 0 chr12 10551874 10552008 -133234447 - L1PA13 LINE L1 0 7601 7468 3851 151 19 7 chr12 10552307 10553340 -133233115 - L1PA13 LINE L1 -544 7055 6017 8735 156 15 2 chr12 10553352 10555374 -133231081 - L1PA13 LINE L1 -4998 2583 1 764 256 31 9 chr12 10555642 10555869 -133230586 + MIR SINE MIR 1 232 -30 2420 133 13 65 chr12 10555879 10555982 -133230473 - Tigger2a DNA MER2_type -2274 434 327 1744 165 21 4 chr12 10555982 10556290 -133230165 + AluJo SINE Alu 11 312 0 2420 133 13 65 chr12 10556290 10556644 -133229811 - Tigger2a DNA MER2_type -2381 327 1 180 0 0 0 chr12 10557583 10557603 -133228852 + (TTA)n Simple_repeat Simple_repeat 2 21 0 936 106 0 0 chr12 10557691 10557832 -133228623 - L1PA8 LINE L1 -4 6168 6028 * 7057 42 5 42 chr12 10557829 10558790 -133227665 + L1PA5 LINE L1 5226 6152 -2 860 97 14 0 chr12 10558805 10558945 -133227510 - L1P3 LINE L1 -678 5476 5328 297 51 0 0 chr12 10559101 10559140 -133227315 + (CAACC)n Simple_repeat Simple_repeat 2 40 0 2742 186 13 2 chr12 10559412 10559943 -133226512 + MER34 LTR ERV1 1 537 -5 211 319 113 7 chr12 10560075 10560216 -133226239 + MIR SINE MIR 34 189 -73 1286 166 42 12 chr12 10560294 10560553 -133225902 + LOR1a LTR ERV1 19 285 -212 496 146 0 0 chr12 10560553 10560635 -133225820 + LOR1b LTR ERV1 380 461 0 240 86 0 0 chr12 10561681 10561716 -133224739 + (TG)n Simple_repeat Simple_repeat 2 36 0 1609 153 38 107 chr12 10561717 10562090 -133224365 - Tigger3(Golem) DNA MER2_type 0 3029 2 296 216 0 11 chr12 10562127 10562215 -133224240 + (TA)n Simple_repeat Simple_repeat 1 87 0 914 264 32 42 chr12 10562669 10562845 -133223610 + L1ME LINE L1 4981 5157 -1007 2163 125 6 3 chr12 10562845 10563156 -133223299 + AluSx SINE Alu 1 312 0 914 264 32 42 chr12 10563156 10563602 -133222853 + L1ME LINE L1 5157 5591 -573 245 306 68 48 chr12 10563734 10564398 -133222057 - L1M4 LINE L1 -1803 4343 3667 26 50 0 0 chr12 10564528 10564568 -133221887 + AT_rich Low_complexity Low_complexity 1 40 0 1282 195 91 75 chr12 10564642 10565026 -133221429 - MLT1B LTR MaLR 0 390 1 21 0 0 0 chr12 10565049 10565070 -133221385 + AT_rich Low_complexity Low_complexity 1 21 0 464 301 119 60 chr12 10565141 10565684 -133220771 - L1M4c LINE L1 -4713 1713 1026 409 369 79 0 chr12 10565984 10566225 -133220230 + L3 LINE CR1 1303 1562 -15 1370 219 89 37 chr12 10567212 10567358 -133219097 - L1ME1 LINE L1 -83 6083 5946 1854 168 10 0 chr12 10567358 10567650 -133218805 - AluJb SINE Alu -17 295 1 1370 219 89 37 chr12 10567650 10567988 -133218467 - L1ME1 LINE L1 -220 5946 5574 2490 67 0 0 chr12 10567988 10568287 -133218168 + AluY SINE Alu 1 299 -12 279 0 0 0 chr12 10568887 10568918 -133217537 + (TG)n Simple_repeat Simple_repeat 1 31 0 2240 104 7 0 chr12 10569020 10569318 -133217137 - AluSp SINE Alu -13 300 1 947 270 90 48 chr12 10569517 10570147 -133216308 - L2 LINE L2 -6 3307 2653 2336 62 0 13 chr12 10570663 10570970 -133215485 - AluY SINE Alu -8 303 1 1580 170 70 55 chr12 10572350 10572733 -133213722 + MLT1B LTR MaLR 2 390 0 749 317 132 29 chr12 10573886 10574549 -133211906 + L2 LINE L2 2554 3292 -21 284 318 55 9 chr12 10575670 10575780 -133210675 - L2 LINE L2 0 3313 3199 1526 290 104 37 chr12 10575855 10576607 -133209848 - L2 LINE L2 -1254 2060 1259 193 384 78 68 chr12 10576687 10576968 -133209487 + L2 LINE L2 2987 3270 -2 26 50 0 0 chr12 10577098 10577138 -133209317 + AT_rich Low_complexity Low_complexity 1 40 0 2810 231 59 55 chr12 10578590 10579661 -133206794 - Tigger6a DNA MER2_type 0 1083 9 319 237 8 8 chr12 10579702 10579714 -133206741 + (TA)n Simple_repeat Simple_repeat 2 13 -119 1980 96 0 4 chr12 10579714 10579974 -133206481 + AluSq SINE Alu 1 259 -54 319 237 8 8 chr12 10579974 10580092 -133206363 + (TA)n Simple_repeat Simple_repeat 12 132 0 635 267 131 5 chr12 10580147 10580353 -133206102 - MLT1C LTR MaLR -16 451 220 228 321 57 21 chr12 10580350 10580490 -133205965 - MLT1L LTR MaLR -326 289 145 * 302 158 0 0 chr12 10580655 10580712 -133205743 + MER1A DNA MER1_type 1 57 -470 * 3277 120 2 25 chr12 10580711 10581235 -133205220 + MER1A DNA MER1_type 18 529 0 2218 236 89 23 chr12 10581235 10581896 -133204559 - MER21B LTR ERV1 -116 747 43 342 257 0 0 chr12 10581899 10581969 -133204486 - MER21B LTR ERV1 -774 89 20 2103 115 0 3 chr12 10582191 10582478 -133203977 - AluSg SINE Alu -24 286 1 336 24 0 0 chr12 10582500 10582541 -133203914 + (TG)n Simple_repeat Simple_repeat 1 41 0 3912 198 21 19 chr12 10582598 10583634 -133202821 + L1MB2 LINE L1 5131 6164 -7 721 160 28 0 chr12 10584924 10585068 -133201387 + L1MB3 LINE L1 5724 5871 -312 327 210 70 14 chr12 10585446 10585589 -133200866 + MER53 DNA DNA 6 156 -33 1077 189 15 5 chr12 10585615 10585821 -133200634 + LOR1b LTR ERV1 254 461 0 1954 193 42 2 chr12 10585821 10586226 -133200229 + LOR1b-int LTR ERV1 1 421 -7699 1353 152 46 0 chr12 10586193 10586430 -133200025 + LOR1b-int LTR ERV1 203 450 -7670 * 240 174 43 0 chr12 10586507 10586553 -133199902 + 5S rRNA rRNA 2 49 -72 872 158 79 0 chr12 10586585 10586749 -133199706 + LOR1b-int LTR ERV1 524 700 -7420 5220 73 33 62 chr12 10586779 10586790 -133199665 + SVA Other Other 57 67 -1393 774 31 0 0 chr12 10586790 10586887 -133199568 + (TCTCCC)n Simple_repeat Simple_repeat 1 97 0 5220 72 36 59 chr12 10586887 10587718 -133198737 + SVA Other Other 57 868 -518 6426 68 15 47 chr12 10587872 10588857 -133197598 + SVA Other Other 433 1386 0 1756 122 20 4 chr12 10588887 10589134 -133197321 + AluJb SINE Alu 43 293 -19 4363 122 58 6 chr12 10589135 10589711 -133196744 + LOR1b-int LTR ERV1 688 1320 -6800 2315 91 0 10 chr12 10589711 10590018 -133196437 - AluY SINE Alu -7 304 1 4363 122 58 6 chr12 10590018 10590259 -133196196 + LOR1b-int LTR ERV1 1320 1547 -6573 1020 181 59 42 chr12 10590260 10590813 -133195642 - MER4-int LTR ERV1 -2591 4007 2348 1799 108 22 4 chr12 10590824 10591093 -133195362 - MER4-int LTR ERV1 -6261 1859 1586 7893 165 20 30 chr12 10591102 10591660 -133194795 + LOR1b-int LTR ERV1 5672 6234 -1886 1621 153 169 110 chr12 10591660 10591845 -133194610 - MER4A LTR ERV1 -4 596 423 2361 105 0 0 chr12 10591845 10592149 -133194306 + AluSx SINE Alu 9 312 0 1621 153 169 110 chr12 10592149 10592526 -133193929 - MER4A LTR ERV1 -177 423 1 7893 165 20 30 chr12 10592526 10593124 -133193331 + LOR1b-int LTR ERV1 6234 6836 -1284 5010 95 12 1 chr12 10593124 10593777 -133192678 + PABL_A LTR ERV1 1 660 0 7893 165 20 30 chr12 10593777 10593796 -133192659 + LOR1b-int LTR ERV1 6836 6854 -1266 2316 97 0 3 chr12 10593796 10594106 -133192349 + AluSq SINE Alu 1 309 -4 7893 165 20 30 chr12 10594106 10594351 -133192104 + LOR1b-int LTR ERV1 6854 7080 -1040 5792 149 52 7 chr12 10594354 10595280 -133191175 + LOR1b-int LTR ERV1 7153 8120 0 1017 194 79 52 chr12 10595280 10595532 -133190923 + LOR1b LTR ERV1 1 259 -202 1689 139 233 14 chr12 10595547 10596014 -133190441 - MER4E LTR ERV1 -15 764 1 304 239 60 0 chr12 10596030 10596097 -133190358 + LOR1a LTR ERV1 282 352 -145 419 313 81 0 chr12 10596669 10596880 -133189575 + LTR33 LTR ERVL 273 500 -21 2740 98 106 5 chr12 10597063 10597470 -133188985 - LTR7 LTR ERV1 -2 448 1 8220 100 21 4 chr12 10597470 10598636 -133187819 - HERVH LTR ERV1 0 7713 6529 2798 88 15 0 chr12 10598609 10599017 -133187438 - HERVH LTR ERV1 -1333 6380 5967 * 229 349 41 41 chr12 10599287 10599456 -133186999 + MIR3 SINE MIR 19 187 -21 2797 16 0 0 chr12 10599729 10600034 -133186421 - AluYb8 SINE Alu -13 305 1 186 43 0 0 chr12 10600096 10600119 -133186336 + (TC)n Simple_repeat Simple_repeat 2 24 0 212 277 11 43 chr12 10600377 10600471 -133185984 + GA-rich Low_complexity Low_complexity 1 91 0 489 270 78 65 chr12 10600570 10600723 -133185732 + MIR SINE MIR 2 160 -102 2149 102 25 35 chr12 10600723 10601037 -133185418 + AluSx SINE Alu 1 311 -1 489 270 78 65 chr12 10601037 10601113 -133185342 + MIR SINE MIR 160 234 -28 28 0 0 0 chr12 10601375 10601403 -133185052 + AT_rich Low_complexity Low_complexity 1 28 0 360 268 65 69 chr12 10601404 10601666 -133184789 + L1MDa LINE L1 2209 2494 -4116 225 291 23 12 chr12 10601671 10601757 -133184698 + L1MDa LINE L1 2822 2908 -3632 707 234 18 0 chr12 10601840 10602011 -133184444 + L1MDa LINE L1 3176 3349 -3191 1707 77 9 5 chr12 10602126 10602348 -133184107 + AluY SINE Alu 66 288 -23 367 194 0 0 chr12 10602494 10602561 -133183894 + MIR SINE MIR 173 239 -23 21 0 0 0 chr12 10602574 10602595 -133183860 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 10602668 10602689 -133183766 + (CA)n Simple_repeat Simple_repeat 2 22 0 1880 160 3 0 chr12 10602810 10603097 -133183358 - AluJo SINE Alu -24 288 1 1435 66 0 0 chr12 10603780 10603963 -133182492 + LTR14B LTR ERVK 426 608 0 1211 146 0 0 chr12 10603963 10604141 -133182314 + AluJb SINE Alu 129 306 -6 207 461 0 0 chr12 10604208 10604260 -133182195 + T-rich Low_complexity Low_complexity 1 52 0 314 248 0 0 chr12 10604281 10604382 -133182073 + G-rich Low_complexity Low_complexity 1 101 0 21 0 0 0 chr12 10604936 10604957 -133181498 + GC_rich Low_complexity Low_complexity 1 21 0 238 171 105 53 chr12 10605104 10605180 -133181275 - L1PBa LINE L1 -4487 2376 2297 27 0 0 0 chr12 10605975 10606002 -133180453 + GC_rich Low_complexity Low_complexity 1 27 0 229 349 41 41 chr12 10606325 10606494 -133179961 - MIR3 SINE MIR -21 187 19 1545 177 78 14 chr12 10607184 10607467 -133178988 + AluJb SINE Alu 1 301 -11 189 107 0 0 chr12 10609182 10609210 -133177245 + (A)n Simple_repeat Simple_repeat 1 28 0 186 250 0 0 chr12 10609351 10609403 -133177052 + L2 LINE L2 3262 3313 0 638 301 15 50 chr12 10609730 10609992 -133176463 + MIR SINE MIR 8 260 -2 1106 137 17 112 chr12 10610200 10610441 -133176014 + AluJo SINE Alu 1 218 -94 360 0 0 0 chr12 10610475 10610515 -133175940 + (CA)n Simple_repeat Simple_repeat 2 41 0 478 235 92 46 chr12 10610825 10610978 -133175477 + MIR SINE MIR 80 239 -23 2283 118 0 6 chr12 10611871 10612185 -133174270 - AluSx SINE Alu 0 312 1 472 298 68 40 chr12 10612995 10613243 -133173212 - MIR SINE MIR -6 256 2 568 222 89 33 chr12 10613471 10613694 -133172761 - MER67A LTR ERV1 0 543 273 * 1332 221 66 75 chr12 10613668 10613922 -133172533 - MER67B LTR ERV1 -282 379 124 2383 80 3 6 chr12 10613922 10614233 -133172222 - AluSp SINE Alu -3 310 1 1332 221 66 75 chr12 10614233 10614295 -133172160 - MER67B LTR ERV1 -537 124 196 2445 79 0 0 chr12 10614295 10614599 -133171856 - AluY SINE Alu -7 304 1 1332 221 66 75 chr12 10614599 10614793 -133171662 - MER67B LTR ERV1 -464 197 3 604 223 106 64 chr12 10614986 10615244 -133171211 + MER39 LTR ERV1 8 484 -223 923 183 195 24 chr12 10615245 10615496 -133170959 - MER39 LTR ERV1 -1 706 413 384 206 112 9 chr12 10615496 10615603 -133170852 + MER39 LTR ERV1 590 707 0 2147 144 0 3 chr12 10616062 10616375 -133170080 + AluSq SINE Alu 1 312 -1 2156 100 9 38 chr12 10616509 10616829 -133169626 + AluSp SINE Alu 1 311 -2 2010 98 4 4 chr12 10616979 10617245 -133169210 + L1PB1 LINE L1 5885 6150 -1 206 233 55 14 chr12 10617394 10617467 -133168988 + (TAAA)n Simple_repeat Simple_repeat 4 79 0 1717 174 3 22 chr12 10617473 10617789 -133168666 + AluJb SINE Alu 1 310 -2 2355 103 0 3 chr12 10618502 10618814 -133167641 - AluSp SINE Alu -2 311 1 761 200 8 0 chr12 10618857 10618987 -133167468 + AluJ SINE Alu 3 133 -169 4016 82 95 12 chr12 10618992 10619551 -133166904 + LTR14B LTR ERVK 4 608 0 1091 135 49 0 chr12 10619551 10619714 -133166741 + AluJ SINE Alu 129 299 -13 1318 102 0 0 chr12 10620089 10620256 -133166199 + AluSq SINE Alu 1 167 -146 453 217 54 0 chr12 10620870 10620962 -133165493 + AluY SINE Alu 199 295 -16 2134 109 0 3 chr12 10621193 10621476 -133164979 + AluSq SINE Alu 1 282 -31 207 0 0 0 chr12 10621479 10621502 -133164953 + (CAA)n Simple_repeat Simple_repeat 2 24 0 261 241 0 38 chr12 10621893 10621972 -133164483 + A-rich Low_complexity Low_complexity 2 77 0 268 206 0 15 chr12 10623591 10623659 -133162796 + CT-rich Low_complexity Low_complexity 2 68 0 2455 53 0 13 chr12 10623759 10624062 -133162393 - AluY SINE Alu -12 299 1 401 343 25 10 chr12 10624063 10624264 -133162191 + L2 LINE L2 2962 3165 -148 516 11 46 172 chr12 10624265 10624352 -133162103 - MADE1 DNA Mariner 0 80 5 310 267 68 48 chr12 10624393 10624539 -133161916 + L2 LINE L2 3156 3304 -9 5508 142 38 13 chr12 10624903 10626199 -133160256 - L1PB3 LINE L1 -1 6869 5540 2103 142 0 0 chr12 10627771 10628080 -133158375 - AluSx SINE Alu -1 311 3 7201 192 13 25 chr12 10628086 10629144 -133157311 - L1PB3 LINE L1 -1311 5551 4518 2150 147 0 0 chr12 10629144 10629444 -133157011 - AluSx SINE Alu -11 301 2 7201 192 13 25 chr12 10629444 10629952 -133156503 - L1PB3 LINE L1 -2344 4518 4005 242 259 12 25 chr12 10630056 10630137 -133156318 - MARNA DNA Mariner -58 528 449 25460 55 7 3 chr12 10630199 10634073 -133152382 - L1PA6 LINE L1 0 6154 2268 6110 199 68 24 chr12 10634073 10634431 -133152024 - L1PB3 LINE L1 -3815 3047 2706 2208 118 0 10 chr12 10634431 10634602 -133151853 - AluSg SINE Alu -8 302 134 2139 132 3 3 chr12 10634602 10634912 -133151543 - AluSq SINE Alu -3 310 1 2208 118 0 10 chr12 10634912 10635045 -133151410 - AluSg SINE Alu -176 134 1 6110 199 68 24 chr12 10635045 10638427 -133148028 - L1PB3 LINE L1 -4156 2706 78 2354 95 3 0 chr12 10638427 10638731 -133147724 - AluSx SINE Alu -7 305 1 6110 199 68 24 chr12 10638731 10638810 -133147645 - L1PB3 LINE L1 -6784 78 4 22 70 0 0 chr12 10638810 10638853 -133147602 + AT_rich Low_complexity Low_complexity 1 43 0 193 370 28 0 chr12 10639047 10639155 -133147300 - MIR3 SINE MIR -29 179 69 1067 224 76 59 chr12 10639162 10639519 -133146936 + MLT1A1 LTR MaLR 1 363 -2 245 271 28 75 chr12 10640676 10640783 -133145672 + MIR SINE MIR 41 142 -66 269 236 14 14 chr12 10640793 10640865 -133145590 - MIR SINE MIR -7 255 184 23 33 0 0 chr12 10641936 10641966 -133144489 + AT_rich Low_complexity Low_complexity 1 30 0 1361 167 0 9 chr12 10645297 10645513 -133140942 - AluSx SINE Alu -98 214 1 1898 133 17 17 chr12 10645745 10646038 -133140417 - AluSx SINE Alu -19 293 1 2389 101 0 0 chr12 10646342 10646650 -133139805 - AluSg SINE Alu 0 310 3 2346 96 0 0 chr12 10646730 10647059 -133139396 - AluSq SINE Alu 0 329 1 215 213 93 13 chr12 10648078 10648153 -133138302 - MIR SINE MIR -59 203 123 2116 128 0 0 chr12 10648169 10648466 -133137989 + AluSq SINE Alu 1 297 -16 2569 69 3 0 chr12 10650043 10650347 -133136108 - AluSq SINE Alu -8 305 1 640 223 8 0 chr12 10650889 10651010 -133135445 + FLAM_A SINE Alu 2 123 -19 2121 120 7 3 chr12 10651277 10651576 -133134879 + AluSp SINE Alu 1 300 -13 2192 113 10 0 chr12 10651751 10652044 -133134411 - AluSx SINE Alu -14 298 3 1590 221 95 42 chr12 10652095 10652141 -133134314 - MLT2B1 LTR ERVL 0 520 478 1884 189 9 3 chr12 10652141 10652485 -133133970 - MER7A DNA MER2_type -1 345 2 1590 221 95 42 chr12 10652485 10652932 -133133523 - MLT2B1 LTR ERVL -42 478 1 196 258 65 32 chr12 10652997 10653059 -133133396 - MER5B DNA MER1_type -10 168 105 210 299 13 13 chr12 10653184 10653261 -133133194 - MER5B DNA MER1_type -101 77 1 2264 123 0 0 chr12 10653441 10653749 -133132706 + AluSg SINE Alu 1 308 -2 1328 147 10 10 chr12 10653749 10653953 -133132502 + AluSg/x SINE Alu 83 286 -24 427 256 34 45 chr12 10654386 10654562 -133131893 - MER5B DNA MER1_type -3 175 2 1252 128 0 6 chr12 10654746 10654918 -133131537 + AluSx SINE Alu 1 171 -141 853 148 15 0 chr12 10655005 10655140 -133131315 + AluSx SINE Alu 173 309 -3 1549 187 35 48 chr12 10655240 10655550 -133130905 + AluJo SINE Alu 1 306 -6 238 211 72 29 chr12 10655550 10655745 -133130710 - L1MC4 LINE L1 -17 6149 5943 1308 185 0 102 chr12 10655776 10656090 -133130365 - AluJo SINE Alu -30 282 1 594 227 53 115 chr12 10656094 10656416 -133130039 - MLT1H LTR MaLR -140 409 108 180 224 0 41 chr12 10656491 10656540 -133129915 - L2 LINE L2 -37 3235 3189 2054 113 3 0 chr12 10656660 10656981 -133129474 + AluSx SINE Alu 1 322 0 1557 199 69 27 chr12 10656981 10657357 -133129098 - MSTA LTR MaLR -36 392 1 1997 111 4 0 chr12 10657745 10658042 -133128413 + AluSx SINE Alu 14 311 0 2028 115 3 16 chr12 10658172 10658484 -133127971 + AluSq SINE Alu 1 308 -5 530 97 0 0 chr12 10658575 10658647 -133127808 - AluY SINE Alu -14 295 224 1274 68 6 6 chr12 10658647 10658810 -133127645 - AluY SINE Alu -148 163 1 1596 72 0 45 chr12 10658856 10659077 -133127378 - AluSc SINE Alu -98 211 1 2153 122 3 0 chr12 10659079 10659382 -133127073 - AluSx SINE Alu -8 304 1 2557 62 0 0 chr12 10660244 10660548 -133125907 - AluYb8 SINE Alu -14 304 1 186 43 0 0 chr12 10660610 10660633 -133125822 + (TC)n Simple_repeat Simple_repeat 2 24 0 212 277 11 43 chr12 10660891 10660985 -133125470 + GA-rich Low_complexity Low_complexity 1 91 0 419 255 83 69 chr12 10661098 10661237 -133125218 + MIR SINE MIR 16 161 -101 2170 102 25 35 chr12 10661237 10661551 -133124904 + AluSx SINE Alu 1 311 -1 419 255 83 69 chr12 10661551 10661627 -133124828 + MIR SINE MIR 161 234 -28 238 228 116 30 chr12 10661778 10661996 -133124459 - L1MEd LINE L1 -2812 3317 3088 22 0 0 0 chr12 10662282 10662304 -133124151 + GC_rich Low_complexity Low_complexity 1 22 0 645 170 0 85 chr12 10662484 10662707 -133123748 - AluSg1 SINE Alu -104 205 2 232 234 88 66 chr12 10662730 10662822 -133123633 - MIR SINE MIR -72 190 93 2228 92 14 7 chr12 10662822 10663114 -133123341 + AluSg SINE Alu 1 294 -16 232 234 88 66 chr12 10663114 10663158 -133123297 - MIR SINE MIR -169 93 51 2129 121 26 3 chr12 10663344 10663649 -133122806 + AluSx SINE Alu 1 312 0 1012 115 0 61 chr12 10663663 10663828 -133122627 + AluJb SINE Alu 1 155 -157 229 277 40 76 chr12 10664093 10664515 -133121940 - L1MEd LINE L1 -4920 1199 793 1827 138 76 3 chr12 10666182 10666471 -133119984 - AluJb SINE Alu -2 310 1 2363 89 3 3 chr12 10666839 10667143 -133119312 - AluSp SINE Alu -9 304 1 302 189 40 0 chr12 10667523 10667597 -133118858 + L1MB5 LINE L1 6098 6174 0 523 170 0 19 chr12 10667859 10667965 -133118490 + L1PA3 LINE L1 6046 6149 -6 857 315 31 45 chr12 10668560 10668941 -133117514 + L2 LINE L2 2589 2964 -350 1117 72 7 7 chr12 10668947 10669099 -133117356 - AluY SINE Alu -18 293 142 276 30 0 0 chr12 10669417 10669450 -133117005 + (CA)n Simple_repeat Simple_repeat 2 34 0 2100 63 22 41 chr12 10669510 10669827 -133116628 - AluY SINE Alu 0 311 1 325 213 67 0 chr12 10669839 10669914 -133116541 + MER46C DNA MER2_type 258 337 -1 297 230 14 0 chr12 10669916 10669990 -133116465 + MIR SINE MIR 154 228 -34 29 47 0 0 chr12 10670515 10670558 -133115897 + GC_rich Low_complexity Low_complexity 1 43 0 413 211 13 0 chr12 10671636 10671712 -133114743 + MER31B LTR ERV1 1 77 -389 868 201 5 48 chr12 10671726 10671915 -133114540 - AluJo SINE Alu -87 225 45 360 230 40 0 chr12 10671924 10671998 -133114457 + MER31B LTR ERV1 88 164 -302 1077 151 0 6 chr12 10672007 10672166 -133114289 - FRAM SINE Alu -25 151 1 1697 191 0 3 chr12 10672178 10672466 -133113989 - AluJb SINE Alu -25 287 1 702 147 0 0 chr12 10672523 10672632 -133113823 - FLAM_C SINE Alu -33 110 2 1174 119 0 6 chr12 10672723 10672891 -133113564 - AluSg/x SINE Alu -11 299 133 748 216 67 14 chr12 10672893 10673101 -133113354 - L1ME3 LINE L1 -181 5981 5763 216 396 19 34 chr12 10674345 10674610 -133111845 - MIR SINE MIR 0 262 2 750 188 0 0 chr12 10674837 10674954 -133111501 + FLAM_C SINE Alu 2 118 -25 2296 102 13 3 chr12 10675106 10675411 -133111044 + AluSx SINE Alu 1 308 -4 410 341 57 19 chr12 10675893 10676157 -133110298 + L1MC4a LINE L1 5594 5867 -1941 372 160 150 20 chr12 10676211 10676311 -133110144 + FRAM SINE Alu 22 134 -32 205 264 52 65 chr12 10676444 10676599 -133109856 - MIR3 SINE MIR -4 204 52 349 173 30 1 chr12 10676723 10676793 -133109662 - FLAM_A SINE Alu -15 118 53 1170 159 13 31 chr12 10677379 10677605 -133108850 - Tigger5 DNA MER2_type -62 2261 2040 232 214 0 0 chr12 10677590 10677632 -133108823 - Tigger5 DNA MER2_type -2265 58 17 * 1969 55 31 12 chr12 10679356 10679611 -133106844 - MLT2A1 LTR ERVL -184 260 1 1588 181 4 4 chr12 10679623 10679893 -133106562 - AluJo SINE Alu -20 292 23 3702 144 39 8 chr12 10679903 10680542 -133105913 - Tigger1 DNA MER2_type -812 1606 948 722 123 44 0 chr12 10680696 10680810 -133105645 + AluSp/q SINE Alu 194 312 -1 1900 109 9 97 chr12 10681006 10681346 -133105109 - AluSq SINE Alu -3 310 1 499 186 118 0 chr12 10681459 10681561 -133104894 - MER21B LTR ERV1 -423 440 327 3978 136 34 11 chr12 10682006 10682660 -133103795 + Tigger1 DNA MER2_type 1749 2417 -1 706 173 11 108 chr12 10682660 10682845 -133103610 - L1MD2 LINE L1 -110 6249 6083 2252 208 2 0 chr12 10683271 10683708 -133102747 - L1 LINE L1 -1935 4211 3774 1829 166 7 7 chr12 10683712 10684013 -133102442 - AluSx SINE Alu -11 301 1 198 0 0 0 chr12 10684016 10684038 -133102417 + (T)n Simple_repeat Simple_repeat 1 22 0 434 157 83 0 chr12 10684285 10684406 -133102049 - AluSg/x SINE Alu -2 310 180 952 100 14 14 chr12 10684616 10684756 -133101699 + AluSg/x SINE Alu 169 308 -4 2307 105 20 0 chr12 10684899 10685204 -133101251 + AluSx SINE Alu 2 312 0 2243 93 13 0 chr12 10685729 10686031 -133100424 + LTR8A LTR ERV1 38 343 -384 315 64 21 0 chr12 10686026 10686073 -133100382 + MADE1 DNA Mariner 33 80 0 * 2160 110 7 0 chr12 10686108 10686399 -133100056 - AluSp SINE Alu -20 293 1 672 173 0 0 chr12 10686590 10686700 -133099755 - FLAM_C SINE Alu -32 111 2 225 108 0 27 chr12 10687254 10687291 -133099164 - MADE1 DNA Mariner 0 80 45 291 260 48 10 chr12 10688125 10688229 -133098226 - MER110A LTR ERV1 -360 108 1 1266 154 5 19 chr12 10688358 10688566 -133097889 + AluSx SINE Alu 1 205 -107 1451 184 11 55 chr12 10688661 10689006 -133097449 - MER31A LTR ERV1 0 485 156 451 222 69 11 chr12 10689006 10689194 -133097261 - LTR23 LTR ERV1 0 445 271 1775 155 0 50 chr12 10689889 10690211 -133096244 - AluJo SINE Alu -6 306 1 851 188 44 0 chr12 10690213 10690373 -133096082 - AluSg/x SINE Alu -24 286 120 692 146 0 0 chr12 10690504 10690607 -133095848 + AluSp/q SINE Alu 185 287 -26 284 167 197 0 chr12 10690936 10691002 -133095453 + L2 LINE L2 3232 3310 -3 38 0 0 0 chr12 10691175 10691213 -133095242 + AT_rich Low_complexity Low_complexity 1 38 0 772 169 0 0 chr12 10691218 10691336 -133095119 - FLAM_C SINE Alu -15 118 1 552 111 0 25 chr12 10691345 10691426 -133095029 - AluSg/x SINE Alu -15 295 217 246 178 0 79 chr12 10691909 10692010 -133094445 + AluY SINE Alu 1 93 -215 1903 174 96 64 chr12 10693722 10693998 -133092457 - LTR65 LTR ERV1 -154 515 214 1570 168 10 56 chr12 10693998 10694302 -133092153 + AluJb SINE Alu 1 290 -22 1903 174 96 64 chr12 10694302 10694524 -133091931 - LTR65 LTR ERV1 -455 214 1 406 207 0 0 chr12 10695069 10695156 -133091299 + Charlie5 DNA MER1_type 2499 2585 -27 374 203 38 13 chr12 10695348 10695427 -133091028 + MIR SINE MIR 30 110 -98 336 174 148 0 chr12 10695539 10695654 -133090801 - AluSg/x SINE Alu -6 296 165 667 165 43 0 chr12 10695767 10695882 -133090573 + MER41A LTR ERV1 435 554 0 353 115 16 16 chr12 10695887 10695948 -133090507 + AluJ/FRAM SINE Alu 232 292 -10 338 164 0 16 chr12 10695951 10696012 -133090443 + L1M LINE L1 5330 5389 -777 1967 144 3 7 chr12 10696013 10696311 -133090144 - AluJb SINE Alu -15 297 1 1765 138 39 3 chr12 10696378 10696683 -133089772 - L1PA8 LINE L1 -4 6168 5853 180 219 0 0 chr12 10696818 10696859 -133089596 + (TA)n Simple_repeat Simple_repeat 2 42 0 3520 95 8 4 chr12 10697081 10697554 -133088901 - L1PA10 LINE L1 0 6168 5694 346 266 47 23 chr12 10697566 10697694 -133088761 - LTR49 LTR ERV1 -362 233 103 1625 135 119 31 chr12 10697850 10698169 -133088286 - THE1C LTR MaLR -28 347 1 2459 126 49 20 chr12 10698248 10698653 -133087802 - L1PB3 LINE L1 -1 6153 5737 273 29 0 0 chr12 10698916 10698950 -133087505 + (TG)n Simple_repeat Simple_repeat 1 34 0 960 131 25 12 chr12 10699441 10699601 -133086854 - AluSg/x SINE Alu -1 309 148 315 274 75 48 chr12 10700213 10700400 -133086055 + MER5B DNA MER1_type 2 188 -1 233 209 163 35 chr12 10700707 10700793 -133085662 + MER46C DNA MER2_type 135 231 -107 494 149 230 0 chr12 10700856 10700943 -133085512 + U6 snRNA snRNA 1 107 0 1973 52 0 0 chr12 10700969 10701201 -133085254 - AluY SINE Alu -14 297 66 552 187 0 0 chr12 10701316 10701423 -133085032 - L1M4 LINE L1 -3191 2955 2849 3172 140 0 0 chr12 10701590 10702069 -133084386 + MST-int LTR MaLR 5 483 -1168 854 197 11 33 chr12 10702072 10702255 -133084200 + AluJ SINE Alu 5 183 -129 1189 214 0 18 chr12 10702704 10702989 -133083466 - AluSx SINE Alu -15 297 18 749 176 17 0 chr12 10703314 10703433 -133083022 + AluJ SINE Alu 176 296 -16 241 236 0 67 chr12 10703438 10703527 -133082928 - MER34B LTR ERV1 -448 117 35 356 299 103 20 chr12 10703646 10703850 -133082605 - MIR SINE MIR -11 251 31 592 107 0 0 chr12 10704103 10704178 -133082277 - AluS SINE Alu -237 76 2 1210 172 0 100 chr12 10704262 10704552 -133081903 + AluJo SINE Alu 39 299 -13 668 203 0 77 chr12 10704567 10704710 -133081745 + FLAM_C SINE Alu 5 136 -7 1410 177 55 19 chr12 10704978 10705249 -133081206 + AluJb SINE Alu 1 281 -31 1015 177 101 0 chr12 10705686 10705895 -133080560 - MER33 DNA MER1_type -93 231 2 1198 134 112 71 chr12 10705899 10706167 -133080288 - MER34C LTR ERV1 -8 577 299 1197 141 25 10 chr12 10706168 10706367 -133080088 - AluSq SINE Alu -19 294 93 276 248 80 58 chr12 10706528 10706620 -133079835 - MIR SINE MIR -72 190 93 2276 93 14 0 chr12 10706620 10706910 -133079545 + AluSg SINE Alu 1 294 -16 276 248 80 58 chr12 10706910 10706954 -133079501 - MIR SINE MIR -169 93 51 375 87 98 65 chr12 10710120 10710212 -133076243 - L1MA8 LINE L1 -3 6288 6194 2096 162 33 13 chr12 10710222 10710616 -133075839 - L1 LINE L1 -1961 4185 3784 1988 118 7 7 chr12 10710623 10710912 -133075543 - AluY SINE Alu -22 289 1 617 270 143 9 chr12 10712945 10713175 -133073280 + MIR SINE MIR 2 262 0 291 104 0 0 chr12 10713504 10713552 -133072903 + (CA)n Simple_repeat Simple_repeat 1 48 0 242 284 61 47 chr12 10713607 10713755 -133072700 + L2 LINE L2 3160 3309 -4 906 254 131 33 chr12 10713901 10714291 -133072164 - MLT2F LTR ERVL -179 484 57 559 319 68 20 chr12 10714781 10715029 -133071426 - MIR SINE MIR 0 262 3 9309 50 2 4 chr12 10715229 10716398 -133070057 - L1P LINE L1 -3678 2468 1303 1490 115 40 12 chr12 10717718 10717971 -133068484 - Tigger1 DNA MER2_type -702 1716 1457 1164 140 5 45 chr12 10718238 10718460 -133067995 - AluSg/x SINE Alu -25 287 75 744 293 86 19 chr12 10719061 10719710 -133066745 + L1ME3 LINE L1 5152 5856 -306 256 190 17 0 chr12 10720608 10720666 -133065789 + L2 LINE L2 1613 1671 -1643 261 154 0 90 chr12 10720681 10720759 -133065696 - LTR67 LTR ERVL -14 543 473 322 286 0 0 chr12 10720908 10720985 -133065470 - LTR67 LTR ERVL -380 177 101 609 218 0 0 chr12 10721158 10721268 -133065187 + FLAM_C SINE Alu 18 127 -16 211 250 0 0 chr12 10722159 10722203 -133064252 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 225 320 6 45 chr12 10723107 10723285 -133063170 + G-rich Low_complexity Low_complexity 2 172 0 201 276 17 17 chr12 10723481 10723539 -133062916 + G-rich Low_complexity Low_complexity 2 59 0 383 304 0 0 chr12 10723587 10723735 -133062720 + G-rich Low_complexity Low_complexity 1 148 0 22 0 0 0 chr12 10724635 10724657 -133061798 + GC_rich Low_complexity Low_complexity 1 22 0 5911 72 4 11 chr12 10724885 10725734 -133060721 + L1P3 LINE L1 1 947 -5199 22 0 0 0 chr12 10726370 10726392 -133060063 + AT_rich Low_complexity Low_complexity 1 22 0 402 314 85 52 chr12 10729782 10730419 -133056036 + L1M4 LINE L1 2266 2923 -3223 598 326 13 13 chr12 10733009 10733319 -133053136 - AluY SINE Alu 0 311 2 289 346 0 19 chr12 10733483 10733590 -133052865 + CT-rich Low_complexity Low_complexity 2 106 0 926 238 21 21 chr12 10736119 10736359 -133050096 - MIR SINE MIR -21 241 2 779 64 9 45 chr12 10737004 10737114 -133049341 - L1PA8 LINE L1 -2 6170 6065 27 73 0 0 chr12 10737608 10737663 -133048792 + AT_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr12 10738315 10738337 -133048118 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr12 10738548 10738575 -133047880 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 10738819 10738841 -133047614 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr12 10739425 10739447 -133047008 + (T)n Simple_repeat Simple_repeat 1 22 0 27 0 0 0 chr12 10739462 10739489 -133046966 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 10739567 10739589 -133046866 + GC_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr12 10739701 10739725 -133046730 + GC_rich Low_complexity Low_complexity 1 24 0 2146 122 0 0 chr12 10740241 10740527 -133045928 - AluSx SINE Alu -26 286 1 320 276 11 39 chr12 10740574 10740755 -133045700 - MLT1C LTR MaLR -5 462 287 180 115 0 0 chr12 10741004 10741030 -133045425 - L2 LINE L2 -97 3216 3191 464 253 145 32 chr12 10741090 10741311 -133045144 - HAL1 LINE L1 -550 1957 1712 433 280 0 0 chr12 10741348 10741448 -133045007 + 7SLRNA srpRNA srpRNA 211 310 -10 1791 181 3 19 chr12 10742093 10742402 -133044053 - AluJo SINE Alu -8 304 1 1465 153 28 0 chr12 10744023 10744272 -133042183 + L1MC1 LINE L1 6076 6331 -2 1065 111 0 0 chr12 10745439 10745583 -133040872 - AluSg/x SINE Alu -15 295 152 285 0 0 0 chr12 10745585 10745618 -133040837 - THE1B LTR MaLR -331 33 1 995 274 29 13 chr12 10745632 10746015 -133040440 - L1 LINE L1 -3094 3052 2664 686 157 14 51 chr12 10746725 10746942 -133039513 + LTR7 LTR ERV1 1 209 -241 226 298 175 9 chr12 10747963 10748077 -133038378 + L2 LINE L2 3139 3271 -1 608 215 65 15 chr12 10748446 10748646 -133037809 + AluSq SINE Alu 1 210 -103 1372 160 160 30 chr12 10748762 10749094 -133037361 - LTR28 LTR ERV1 -259 761 387 347 96 0 0 chr12 10749219 10749271 -133037184 + HERVH LTR ERV1 3942 3993 -3720 1476 109 0 5 chr12 10749273 10749494 -133036961 + HERVH LTR ERV1 4488 4707 -3006 218 203 136 0 chr12 10749513 10749572 -133036883 + MIR SINE MIR 186 252 -10 243 253 111 0 chr12 10749584 10749683 -133036772 + L1MC5 LINE L1 6993 7102 -859 185 302 0 38 chr12 10750190 10750243 -133036212 + L2 LINE L2 3244 3294 -19 205 267 199 30 chr12 10750303 10750434 -133036021 - MIR SINE MIR -64 198 46 230 305 17 0 chr12 10752278 10752337 -133034118 - L2 LINE L2 -16 3297 3238 180 0 0 0 chr12 10752566 10752586 -133033869 + (A)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr12 10752709 10752734 -133033721 + AT_rich Low_complexity Low_complexity 1 25 0 1312 71 10 10 chr12 10753312 10753510 -133032945 - LTR7 LTR ERV1 -2 448 251 198 0 0 0 chr12 10753552 10753574 -133032881 + (TTCC)n Simple_repeat Simple_repeat 3 24 0 2094 94 4 0 chr12 10753640 10753917 -133032538 - AluSx SINE Alu -34 278 1 225 0 0 0 chr12 10754302 10754327 -133032128 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 283 264 14 27 chr12 10755398 10755546 -133030909 - L1MB3 LINE L1 -2 6181 6036 1176 284 53 2 chr12 10755709 10756296 -133030159 + ERVL LTR ERVL 3872 4564 -963 23 0 0 0 chr12 10756586 10756609 -133029846 + AT_rich Low_complexity Low_complexity 1 23 0 1786 151 0 14 chr12 10756611 10756889 -133029566 - AluJo SINE Alu -25 287 14 2027 90 54 4 chr12 10758484 10758820 -133027635 - THE1B-int LTR MaLR -1098 482 97 965 126 18 6 chr12 10758807 10758974 -133027481 - THE1B-int LTR MaLR -1411 169 1 * 587 175 15 22 chr12 10758978 10759115 -133027340 - THE1B LTR MaLR -4 360 225 409 289 92 65 chr12 10759996 10760256 -133026199 + HAL1 LINE L1 2241 2507 0 315 332 126 10 chr12 10760352 10760551 -133025904 + L2 LINE L2 2458 2679 -635 222 118 0 0 chr12 10760738 10760772 -133025683 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1436 159 4 4 chr12 10760985 10761236 -133025219 - L1PA16 LINE L1 -2 6164 5914 1922 100 0 0 chr12 10761394 10761643 -133024812 + AluSx SINE Alu 64 312 0 180 0 0 0 chr12 10762539 10762559 -133023896 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 846 224 12 6 chr12 10762575 10762745 -133023710 + FRAM SINE Alu 1 165 -11 2194 123 0 0 chr12 10763194 10763487 -133022968 - AluSx SINE Alu -18 294 2 406 333 14 0 chr12 10763513 10763654 -133022801 + MIR SINE MIR 118 260 -2 223 24 24 49 chr12 10763732 10763773 -133022682 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2237 88 0 3 chr12 10763775 10764059 -133022396 - AluSq SINE Alu -25 288 6 27 29 0 0 chr12 10764654 10764688 -133021767 + AT_rich Low_complexity Low_complexity 1 34 0 2147 142 0 0 chr12 10764930 10765233 -133021222 - AluSx SINE Alu -9 303 1 2146 115 52 25 chr12 10765244 10765609 -133020846 - THE1C LTR MaLR 0 375 1 10241 115 37 10 chr12 10765609 10767148 -133019307 - THE1C-int LTR MaLR 0 1580 1 1741 147 107 26 chr12 10767148 10767495 -133018960 - THE1C LTR MaLR 0 375 1 1752 180 3 0 chr12 10768035 10768324 -133018131 + AluSx SINE Alu 1 290 -22 266 356 18 61 chr12 10768556 10768796 -133017659 + L2 LINE L2 2795 3028 -285 537 212 209 7 chr12 10768796 10768956 -133017499 + LTR28 LTR ERV1 1 139 -286 273 188 16 0 chr12 10768969 10769033 -133017422 + LTR1 LTR ERV1 121 185 -600 * 2822 184 132 16 chr12 10769007 10769644 -133016811 + LTR28 LTR ERV1 308 1018 -2 272 319 33 91 chr12 10769655 10769842 -133016613 + L2 LINE L2 3048 3215 -98 2314 119 3 3 chr12 10769842 10770154 -133016301 - AluSp SINE Alu -1 312 1 272 319 33 91 chr12 10770154 10770242 -133016213 + L2 LINE L2 3215 3307 -6 888 127 23 12 chr12 10771220 10771393 -133015062 + CT-rich Low_complexity Low_complexity 4 178 0 2193 116 0 0 chr12 10771406 10771699 -133014756 - AluSx SINE Alu -8 304 12 2000 149 3 0 chr12 10771827 10772128 -133014327 - AluJb SINE Alu -10 302 1 242 180 0 0 chr12 10772327 10772377 -133014078 - L1MC5 LINE L1 -71 7890 7841 1117 219 35 60 chr12 10772655 10773108 -133013347 - L1MC5 LINE L1 -516 7445 7004 371 196 28 47 chr12 10773148 10773255 -133013200 - L1MC4 LINE L1 -11 8031 7927 1068 143 0 87 chr12 10773261 10773492 -133012963 - MER67D LTR ERV1 -294 220 10 245 182 0 30 chr12 10773503 10773569 -133012886 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 1812 154 8 17 chr12 10774264 10774615 -133011840 - L1MA7 LINE L1 -593 5698 5351 * 1888 149 53 3 chr12 10774612 10774968 -133011487 + L1MA7 LINE L1 5702 6075 -216 620 136 16 8 chr12 10774970 10775095 -133011360 + L1MA7 LINE L1 6166 6291 0 2351 89 20 0 chr12 10775100 10775402 -133011053 + AluSx SINE Alu 1 308 -4 27 29 0 0 chr12 10775644 10775678 -133010777 + AT_rich Low_complexity Low_complexity 1 34 0 2342 94 0 3 chr12 10776273 10776581 -133009874 + AluSq SINE Alu 6 312 -1 406 333 14 0 chr12 10776678 10776819 -133009636 - MIR SINE MIR -2 260 118 2189 123 0 0 chr12 10776845 10777138 -133009317 + AluSx SINE Alu 2 294 -18 846 224 12 6 chr12 10777587 10777757 -133008698 - FRAM SINE Alu -11 165 1 180 0 0 0 chr12 10777773 10777793 -133008662 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1922 100 0 0 chr12 10778689 10778938 -133007517 - AluSx SINE Alu 0 312 64 577 248 42 126 chr12 10779351 10779374 -133007081 + HsTC2 DNA Tc2 7 30 -1868 2335 129 33 6 chr12 10779374 10779739 -133006716 + THE1C LTR MaLR 1 375 0 577 248 42 126 chr12 10779739 10780180 -133006275 + HsTC2 DNA Tc2 30 1583 -315 23 33 0 0 chr12 10780235 10780265 -133006190 + AT_rich Low_complexity Low_complexity 1 30 0 504 0 0 0 chr12 10780299 10780355 -133006100 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2362 88 13 0 chr12 10780359 10780666 -133005789 - AluSx SINE Alu -1 311 1 369 335 32 2 chr12 10781161 10781329 -133005126 - MIR SINE MIR -59 149 23 234 0 0 0 chr12 10781970 10781996 -133004459 + (T)n Simple_repeat Simple_repeat 1 26 0 1106 118 0 6 chr12 10782215 10782404 -133004051 - AluSg/x SINE Alu 0 310 123 2142 127 0 0 chr12 10782901 10783193 -133003262 - AluSx SINE Alu -20 292 1 3581 122 13 6 chr12 10783239 10783762 -133002693 - MER1A DNA MER1_type 0 527 1 694 244 0 55 chr12 10783923 10784087 -133002368 + AluJo SINE Alu 1 155 -157 1091 201 0 0 chr12 10784102 10784296 -133002159 + AluJb SINE Alu 113 306 0 23 68 0 0 chr12 10784722 10784766 -133001689 + AT_rich Low_complexity Low_complexity 1 44 0 266 284 57 96 chr12 10784807 10785089 -133001366 - L1M4c LINE L1 -4907 1477 1207 3638 123 4 2 chr12 10785181 10785736 -133000719 - L1PA14 LINE L1 0 6161 5606 2296 105 3 51 chr12 10785737 10785915 -133000540 + L1P4 LINE L1 5021 5206 -955 2375 62 0 13 chr12 10785915 10786222 -133000233 + AluY SINE Alu 1 303 -8 2296 105 3 51 chr12 10786222 10786376 -133000079 + L1P4 LINE L1 5206 5366 -795 2261 101 3 19 chr12 10786376 10786693 -132999762 + AluSx SINE Alu 1 312 0 2296 105 3 51 chr12 10786693 10786974 -132999481 + L1P4 LINE L1 5366 5603 -558 3124 250 56 33 chr12 10787030 10789806 -132996649 - L1M4 LINE L1 -2904 3478 542 2155 137 7 0 chr12 10791465 10791772 -132994683 + AluSx SINE Alu 1 309 -3 274 286 86 9 chr12 10792051 10792261 -132994194 - L1MEc LINE L1 -4878 1518 1293 1089 84 0 0 chr12 10792304 10792435 -132994020 + AluSg SINE Alu 1 131 -179 2353 75 0 25 chr12 10792441 10792760 -132993695 + AluY SINE Alu 1 311 0 272 320 34 7 chr12 10792916 10793063 -132993392 + MER117 DNA MER1_type 43 193 -4 353 400 15 30 chr12 10793435 10793700 -132992755 + MIR SINE MIR 2 262 0 2362 161 67 18 chr12 10796326 10796465 -132989990 - L1MA9 LINE L1 -1 6311 6180 207 0 0 0 chr12 10796465 10796488 -132989967 + (TG)n Simple_repeat Simple_repeat 2 24 0 2362 161 67 18 chr12 10796488 10796859 -132989596 - L1MA9 LINE L1 -132 6180 5776 24 32 0 0 chr12 10796930 10796961 -132989494 + AT_rich Low_complexity Low_complexity 1 31 0 2245 106 0 0 chr12 10797263 10797555 -132988900 + AluSx SINE Alu 5 296 -16 29 47 0 0 chr12 10798365 10798408 -132988047 + AT_rich Low_complexity Low_complexity 1 43 0 180 219 0 0 chr12 10798460 10798501 -132987954 + (TA)n Simple_repeat Simple_repeat 2 42 0 1336 7 0 0 chr12 10798720 10798873 -132987582 - L1PA4 LINE L1 -2 6153 6001 269 347 42 26 chr12 10799194 10799384 -132987071 - L2 LINE L2 -1 3312 3120 368 279 18 0 chr12 10799538 10799649 -132986806 - MER94 DNA DNA -21 113 1 293 387 85 15 chr12 10799660 10799991 -132986464 - L2 LINE L2 -407 2907 2554 279 293 96 63 chr12 10800265 10800630 -132985825 - L1M4 LINE L1 -1800 4346 3970 2285 117 0 0 chr12 10800927 10801236 -132985219 - AluSx SINE Alu -3 309 1 22 70 0 0 chr12 10801608 10801651 -132984804 + AT_rich Low_complexity Low_complexity 1 43 0 29 28 0 0 chr12 10802085 10802121 -132984334 + AT_rich Low_complexity Low_complexity 1 36 0 2382 88 0 0 chr12 10802571 10802865 -132983590 - AluSx SINE Alu -15 297 4 302 310 54 16 chr12 10803655 10803784 -132982671 + MIR SINE MIR 119 252 -10 21 57 0 0 chr12 10804602 10804637 -132981818 + AT_rich Low_complexity Low_complexity 1 35 0 2155 115 10 0 chr12 10805782 10806070 -132980385 + AluSx SINE Alu 1 291 -21 230 268 83 12 chr12 10806132 10806300 -132980155 + L1M4 LINE L1 2267 2446 -3700 352 257 44 9 chr12 10806359 10806472 -132979983 - L1MEd LINE L1 -5026 1093 977 2247 105 3 0 chr12 10806677 10806971 -132979484 - AluSx SINE Alu -17 295 1 420 275 135 62 chr12 10807582 10808018 -132978437 - L1ME3A LINE L1 -15 6155 5688 1240 92 0 0 chr12 10808303 10808466 -132977989 - AluSp SINE Alu -6 307 145 21 0 0 0 chr12 10808623 10808644 -132977811 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr12 10808895 10808919 -132977536 + (T)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chr12 10809494 10809519 -132976936 + AT_rich Low_complexity Low_complexity 1 25 0 305 137 14 14 chr12 10809545 10809618 -132976837 - L1MC2 LINE L1 -1 6343 6271 276 151 226 0 chr12 10809620 10809673 -132976782 - HERVL68 LTR ERVL -1466 1571 1507 2523 218 32 7 chr12 10809741 10810310 -132976145 + HERVL40 LTR ERVL 3438 4020 -1510 216 0 0 0 chr12 10810568 10810592 -132975863 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2365 128 19 3 chr12 10810770 10811138 -132975317 - L1PA15 LINE L1 0 6165 5792 26 0 0 0 chr12 10812129 10812155 -132974300 + AT_rich Low_complexity Low_complexity 1 26 0 479 345 40 6 chr12 10812386 10812560 -132973895 - LTR33 LTR ERVL -309 212 33 1171 229 147 37 chr12 10812744 10813199 -132973256 + MLT1D LTR MaLR 1 505 0 27 0 0 0 chr12 10813900 10813927 -132972528 + AT_rich Low_complexity Low_complexity 1 27 0 2301 98 3 3 chr12 10814039 10814336 -132972119 - AluSp SINE Alu -15 298 2 273 340 86 41 chr12 10814456 10814747 -132971708 - L2 LINE L2 -206 3107 2804 410 296 123 21 chr12 10814771 10815014 -132971441 - LTR33A LTR ERVL 0 523 256 1381 144 92 0 chr12 10815066 10815316 -132971139 + L1MB1 LINE L1 5895 6167 -1 22 0 0 0 chr12 10815316 10815338 -132971117 + AT_rich Low_complexity Low_complexity 1 22 0 329 259 41 81 chr12 10815379 10815576 -132970879 - LTR33A LTR ERVL -328 195 7 2133 98 3 34 chr12 10815674 10815996 -132970459 + AluSq SINE Alu 1 313 0 362 305 60 12 chr12 10816303 10816470 -132969985 + MER46C DNA MER2_type 159 333 -5 2358 75 14 0 chr12 10816476 10816769 -132969686 + AluSp SINE Alu 1 297 -16 252 351 81 22 chr12 10818121 10818306 -132968149 - MIR SINE MIR -18 244 49 874 158 0 0 chr12 10818455 10818588 -132967867 - FLAM_C SINE Alu 0 133 1 2165 103 10 0 chr12 10818638 10818930 -132967525 + AluSx SINE Alu 3 297 -15 2588 47 3 0 chr12 10819567 10819865 -132966590 + AluY SINE Alu 1 299 -12 1350 102 0 0 chr12 10819866 10820042 -132966413 + AluSg/x SINE Alu 126 301 -11 216 226 38 0 chr12 10820063 10820116 -132966339 + (TATG)n Simple_repeat Simple_repeat 3 57 0 360 289 100 28 chr12 10820298 10820478 -132965977 + MIR SINE MIR 60 252 -10 2190 102 7 0 chr12 10821562 10821857 -132964598 - AluSp SINE Alu -16 297 1 219 203 136 0 chr12 10822357 10822416 -132964039 + MIR SINE MIR 186 252 -10 270 253 111 0 chr12 10822428 10822527 -132963928 + L1MC5 LINE L1 6993 7102 -859 741 162 11 108 chr12 10822561 10822746 -132963709 + L1MD2 LINE L1 6083 6249 -110 13869 141 30 15 chr12 10822746 10823400 -132963055 - Tigger1 DNA MER2_type -1 2417 1774 3423 83 0 11 chr12 10823400 10823870 -132962585 - L1PA8 LINE L1 0 6172 5708 13869 141 30 15 chr12 10823870 10825596 -132960859 - Tigger1 DNA MER2_type -644 1774 1 2116 117 10 7 chr12 10826176 10826476 -132959979 - AluSx SINE Alu -11 301 1 482 257 9 92 chr12 10826620 10826838 -132959617 + L1ME3A LINE L1 5882 6081 -89 22 80 0 0 chr12 10827289 10827339 -132959116 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr12 10827778 10827799 -132958656 + AT_rich Low_complexity Low_complexity 1 21 0 2444 70 0 0 chr12 10828011 10828312 -132958143 + AluY SINE Alu 1 301 -10 228 200 0 0 chr12 10828524 10828569 -132957886 + MER39B LTR ERV1 609 653 0 37 23 0 0 chr12 10829182 10829226 -132957229 + AT_rich Low_complexity Low_complexity 1 44 0 25 65 0 0 chr12 10829281 10829327 -132957128 + AT_rich Low_complexity Low_complexity 1 46 0 3496 110 8 4 chr12 10830255 10830764 -132955691 + MER9 LTR ERVK 1 511 0 236 91 23 0 chr12 10830958 10831002 -132955453 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 9954 142 49 8 chr12 10831160 10832852 -132953603 - Tigger1 DNA MER2_type -1 2417 657 1915 253 67 16 chr12 10832863 10833432 -132953023 + LTR26 LTR ERV1 6 603 0 * 3255 178 45 14 chr12 10833432 10834072 -132952383 - Tigger1 DNA MER2_type -1758 660 1 2263 205 62 87 chr12 10834203 10834915 -132951540 - LTR8A LTR ERV1 0 727 34 260 217 36 72 chr12 10835075 10835158 -132951297 - LTR48 LTR ERV1 -128 659 580 912 186 116 28 chr12 10835287 10835502 -132950953 - MER34C LTR ERV1 -351 234 1 1710 136 66 0 chr12 10836222 10836480 -132949975 - AluSp SINE Alu -38 275 1 493 349 64 22 chr12 10837120 10837481 -132948974 - LTR16C LTR ERVL -4 487 112 2304 54 19 26 chr12 10837657 10837970 -132948485 + AluY SINE Alu 1 311 0 276 30 0 0 chr12 10838030 10838063 -132948392 + (TG)n Simple_repeat Simple_repeat 2 34 0 521 312 35 0 chr12 10839210 10839383 -132947072 + MIR SINE MIR 82 260 -2 324 338 38 19 chr12 10840652 10840809 -132945646 + MIR SINE MIR 29 188 -74 1930 100 7 52 chr12 10841894 10842203 -132944252 - AluSq SINE Alu -18 295 1 1784 143 55 0 chr12 10842295 10842567 -132943888 + AluSx SINE Alu 1 287 -25 218 376 101 7 chr12 10842776 10842925 -132943530 + L2 LINE L2 2897 3059 -213 21 36 0 0 chr12 10843002 10843030 -132943425 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr12 10843718 10843755 -132942700 + AT_rich Low_complexity Low_complexity 1 37 0 2172 123 7 0 chr12 10843820 10844130 -132942325 - AluSq SINE Alu -1 312 1 2357 57 0 0 chr12 10844148 10844456 -132941999 - AluY SINE Alu 0 308 1 2396 68 7 0 chr12 10844486 10844794 -132941661 + AluY SINE Alu 1 310 -1 38 0 0 0 chr12 10845575 10845613 -132940842 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr12 10845952 10845984 -132940471 + AT_rich Low_complexity Low_complexity 1 32 0 21 95 0 0 chr12 10846765 10846828 -132939627 + AT_rich Low_complexity Low_complexity 1 63 0 1484 158 55 28 chr12 10846950 10847204 -132939251 - AluJo SINE Alu -51 261 1 39 0 0 0 chr12 10847377 10847416 -132939039 + AT_rich Low_complexity Low_complexity 1 39 0 2361 111 3 0 chr12 10847614 10847921 -132938534 + AluSx SINE Alu 1 308 -4 626 238 33 33 chr12 10847929 10848110 -132938345 - MLT1E1 LTR MaLR -469 185 5 1746 183 6 10 chr12 10848174 10848485 -132937970 - AluJb SINE Alu -2 310 1 186 43 0 0 chr12 10848549 10848572 -132937883 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 3652 43 2 0 chr12 10848572 10849038 -132937417 - L1PA8 LINE L1 -24 6148 5682 2397 126 114 7 chr12 10849097 10849502 -132936953 + MER83 LTR ERV1 1 448 0 2447 141 0 3 chr12 10849506 10849882 -132936573 - THE1C LTR MaLR 0 375 1 2414 66 3 3 chr12 10850346 10850650 -132935805 + AluY SINE Alu 1 304 -7 799 251 38 0 chr12 10850764 10850975 -132935480 - MER58A DNA MER1_type 0 224 6 1712 246 36 49 chr12 10851154 10851642 -132934813 + MLT1F LTR MaLR 1 483 -59 2268 104 7 7 chr12 10851642 10851951 -132934504 - AluSx SINE Alu -3 309 1 1712 246 36 49 chr12 10851951 10852011 -132934444 + MLT1F LTR MaLR 483 542 0 447 316 27 20 chr12 10852126 10852420 -132934035 + MLT1F-int LTR MaLR 286 581 -790 335 288 92 70 chr12 10852919 10853246 -132933209 + MLT1F-int LTR MaLR 1023 1356 -15 1574 249 47 38 chr12 10853263 10853796 -132932659 + MLT1F LTR MaLR 5 542 0 2102 132 0 0 chr12 10853833 10854129 -132932326 - AluSx SINE Alu -16 296 1 252 327 9 18 chr12 10854299 10854412 -132932043 - HAL1 LINE L1 -586 1921 1810 1367 284 69 33 chr12 10854465 10855281 -132931174 - L1ME3 LINE L1 -2 6160 5316 649 250 65 26 chr12 10855296 10855636 -132930819 - L1ME1 LINE L1 -9 6157 5805 2150 143 0 0 chr12 10855638 10855946 -132930509 - AluSx SINE Alu -4 308 1 2252 162 10 2 chr12 10856017 10856424 -132930031 - L1PA15 LINE L1 -1 6164 5755 824 243 45 94 chr12 10856445 10857071 -132929384 - L1ME1 LINE L1 -1669 4477 3883 6551 245 91 12 chr12 10857154 10858081 -132928374 - L1MB1 LINE L1 -1 5991 5139 1841 150 123 114 chr12 10858081 10858676 -132927779 - MER4A LTR ERV1 0 600 1 6551 245 91 12 chr12 10858676 10860520 -132925935 - L1MB1 LINE L1 -853 5139 2820 2152 132 30 33 chr12 10860520 10860885 -132925570 - THE1B LTR MaLR 0 364 1 6551 245 91 12 chr12 10860885 10861639 -132924816 - L1MB1 LINE L1 -3172 2820 2127 1458 302 72 25 chr12 10861648 10862314 -132924141 - L1MB1 LINE L1 -5194 697 1 244 188 59 0 chr12 10862326 10862411 -132924044 + (TA)n Simple_repeat Simple_repeat 1 90 0 543 358 45 11 chr12 10863937 10864378 -132922077 + L1M4 LINE L1 2274 2729 -3417 567 212 9 0 chr12 10864449 10864562 -132921893 - Tigger2 DNA MER2_type -10 2708 2595 3504 51 0 11 chr12 10864767 10865220 -132921235 - LTR7 LTR ERV1 -2 448 1 2385 72 48 13 chr12 10865220 10865597 -132920858 - HERVH LTR ERV1 0 7713 7324 1349 120 19 0 chr12 10865597 10865813 -132920642 - HERVH LTR ERV1 -1894 5819 5600 2982 144 0 3 chr12 10865814 10866410 -132920045 - HERVH LTR ERV1 -2564 5149 4488 3213 109 0 4 chr12 10866412 10866908 -132919547 - HERVH LTR ERV1 -3720 3993 3500 728 152 41 0 chr12 10866907 10867052 -132919403 - HERVH LTR ERV1 -4423 3290 3140 * 18905 93 29 11 chr12 10867046 10869980 -132916475 - HERVH LTR ERV1 -4726 2987 1 3413 53 4 11 chr12 10869982 10870433 -132916022 - LTR7 LTR ERV1 -2 448 1 1861 131 39 36 chr12 10871132 10871437 -132915018 - AluSx SINE Alu -6 306 1 1241 268 70 41 chr12 10871937 10872244 -132914211 - L1ME3 LINE L1 0 6162 5865 6455 91 12 24 chr12 10872244 10873342 -132913113 - L1PA11 LINE L1 -7 6167 5069 1241 268 70 41 chr12 10873342 10873616 -132912839 - L1ME3 LINE L1 -297 5865 5564 2820 128 9 9 chr12 10873667 10874126 -132912329 + LOR1a LTR ERV1 2 460 -37 257 231 104 22 chr12 10874224 10874358 -132912097 - L1M2 LINE L1 -853 5447 5303 359 268 3 86 chr12 10874438 10874575 -132911880 - L1ME3 LINE L1 -1540 4606 4506 2496 59 0 7 chr12 10874575 10874879 -132911576 - AluY SINE Alu -9 302 1 359 268 3 86 chr12 10874879 10875043 -132911412 - L1ME3 LINE L1 -1640 4506 4330 369 199 119 26 chr12 10875058 10875209 -132911246 - L1MA10 LINE L1 0 6334 6170 347 404 63 9 chr12 10875311 10875564 -132910891 - L1ME LINE L1 -5573 497 230 25 31 0 0 chr12 10875640 10875672 -132910783 + AT_rich Low_complexity Low_complexity 1 32 0 780 168 46 5 chr12 10875673 10875869 -132910586 - L1MA7 LINE L1 -7 6284 6081 1870 106 12 97 chr12 10876093 10876432 -132910023 - AluSq SINE Alu -3 310 1 1877 136 73 0 chr12 10876569 10876842 -132909613 - AluSx SINE Alu -19 293 1 448 274 137 49 chr12 10877060 10877345 -132909110 - L2 LINE L2 -16 3297 2988 283 298 0 11 chr12 10878897 10878991 -132907464 + MER94 DNA DNA 42 134 0 5872 120 136 123 chr12 10879347 10881022 -132905433 + pTR5 LTR ERV1 743 2438 0 373 302 79 8 chr12 10881931 10882057 -132904398 - MER5A DNA MER1_type 0 189 55 261 0 0 0 chr12 10882170 10882199 -132904256 + (CA)n Simple_repeat Simple_repeat 1 29 0 214 215 51 89 chr12 10883818 10883897 -132902558 - MIR SINE MIR -80 182 107 198 345 81 11 chr12 10883963 10884050 -132902405 - L2 LINE L2 -55 3217 3125 2234 99 0 7 chr12 10885725 10886017 -132900438 - AluSg SINE Alu -16 294 5 1552 138 0 0 chr12 10886195 10886420 -132900035 - AluSg/x SINE Alu -3 307 83 25 0 0 0 chr12 10886726 10886751 -132899704 + AT_rich Low_complexity Low_complexity 1 25 0 702 250 26 26 chr12 10887095 10887287 -132899168 + MIR SINE MIR 37 228 -34 885 216 37 49 chr12 10888440 10888685 -132897770 - MLT1E LTR MaLR -16 577 336 524 162 153 28 chr12 10888775 10888921 -132897534 - MLT1E LTR MaLR -419 174 11 1119 219 22 4 chr12 10888991 10889260 -132897195 + L1MB3 LINE L1 5738 6011 -172 888 199 51 74 chr12 10889274 10889585 -132896870 - MLT2D LTR ERVL -19 395 92 2140 91 3 7 chr12 10889630 10889947 -132896508 + AluSq SINE Alu 1 316 0 1021 93 6 19 chr12 10889969 10890131 -132896324 + L1MB3 LINE L1 6006 6165 -18 1654 147 61 14 chr12 10890203 10890496 -132895959 - AluSx SINE Alu -5 307 1 318 193 0 48 chr12 10890687 10890770 -132895685 - L1MC5 LINE L1 -176 7785 7707 240 321 158 6 chr12 10891149 10891314 -132895141 - MIR SINE MIR -71 191 2 521 320 20 10 chr12 10892171 10892371 -132894084 - MIR SINE MIR -4 258 57 2020 100 38 0 chr12 10893213 10893502 -132892953 + AluSg SINE Alu 1 300 -10 312 247 106 0 chr12 10893897 10893982 -132892473 + MIR SINE MIR 74 167 -95 379 299 68 14 chr12 10894529 10894676 -132891779 + MIR SINE MIR 32 186 -76 228 24 73 0 chr12 10895143 10895184 -132891271 + T-rich Low_complexity Low_complexity 2 45 0 2319 108 0 0 chr12 10895200 10895505 -132890950 + AluSx SINE Alu 1 305 -7 27 29 0 0 chr12 10895684 10895718 -132890737 + AT_rich Low_complexity Low_complexity 1 34 0 385 97 28 56 chr12 10896537 10896598 -132889857 - AluSc SINE Alu -2 297 237 1520 85 0 15 chr12 10896598 10896798 -132889657 - AluSc SINE Alu -112 197 1 2257 113 3 0 chr12 10897436 10897746 -132888709 - AluSq SINE Alu 0 313 3 1906 163 3 10 chr12 10897751 10898064 -132888391 - AluSx SINE Alu 0 312 2 939 100 14 14 chr12 10898207 10898347 -132888108 - AluSg/x SINE Alu -4 308 169 1144 103 0 0 chr12 10898558 10898713 -132887742 - AluSg/x SINE Alu -24 288 134 2289 90 0 0 chr12 10898713 10899013 -132887442 - AluSx SINE Alu -12 300 1 2224 101 0 10 chr12 10900050 10900348 -132886107 - AluSx SINE Alu -17 295 1 2511 54 0 0 chr12 10900559 10900856 -132885599 + AluY SINE Alu 1 297 -14 24 0 0 0 chr12 10901480 10901504 -132884951 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr12 10901602 10901638 -132884817 + AT_rich Low_complexity Low_complexity 1 36 0 1240 219 35 60 chr12 10902172 10902625 -132883830 - L1MC5 LINE L1 -516 7445 7004 400 196 28 47 chr12 10902665 10902772 -132883683 - L1MC4 LINE L1 -11 8031 7927 1170 134 0 88 chr12 10902778 10903016 -132883439 - MER67D LTR ERV1 -294 220 4 245 182 0 30 chr12 10903020 10903086 -132883369 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 216 0 0 0 chr12 10903357 10903381 -132883074 + (T)n Simple_repeat Simple_repeat 1 24 0 1926 150 8 25 chr12 10903778 10904137 -132882318 - L1MA7 LINE L1 -588 5703 5351 * 2004 149 53 3 chr12 10904134 10904490 -132881965 + L1MA7 LINE L1 5702 6075 -216 636 136 16 8 chr12 10904492 10904617 -132881838 + L1MA7 LINE L1 6166 6291 0 2167 89 0 7 chr12 10904627 10904935 -132881520 + AluSq SINE Alu 7 312 0 1048 86 6 19 chr12 10904957 10905119 -132881336 + L1MB3 LINE L1 6006 6165 -18 1615 146 61 17 chr12 10905191 10905486 -132880969 - AluSx SINE Alu -4 308 1 337 193 0 48 chr12 10905677 10905760 -132880695 - L1MC5 LINE L1 -176 7785 7707 182 200 109 18 chr12 10906080 10906135 -132880320 - MIR SINE MIR -71 191 132 244 321 158 6 chr12 10906139 10906304 -132880151 - MIR SINE MIR -71 191 2 194 316 20 41 chr12 10907711 10907809 -132878646 - L2 LINE L2 -1343 1971 1876 32 0 0 0 chr12 10908116 10908148 -132878307 + AT_rich Low_complexity Low_complexity 1 32 0 469 265 43 16 chr12 10909044 10909188 -132877267 + MIR SINE MIR 68 212 -50 201 214 143 0 chr12 10909732 10909788 -132876667 + MIR SINE MIR 57 120 -142 201 211 0 0 chr12 10910483 10910535 -132875920 + GA-rich Low_complexity Low_complexity 1 52 0 285 98 0 0 chr12 10910828 10910869 -132875586 + (TTTTA)n Simple_repeat Simple_repeat 4 44 0 1497 149 0 131 chr12 10910874 10911202 -132875253 - AluJb SINE Alu -16 286 2 293 295 78 36 chr12 10911414 10911607 -132874848 - L2 LINE L2 0 3313 3113 24 53 0 0 chr12 10912094 10912132 -132874323 + AT_rich Low_complexity Low_complexity 1 38 0 300 314 81 8 chr12 10912137 10912261 -132874194 - L2 LINE L2 -14 3299 3167 189 337 145 40 chr12 10912370 10912619 -132873836 - L2 LINE L2 -353 2961 2687 1589 122 7 52 chr12 10912861 10913132 -132873323 + AluJb SINE Alu 1 259 -53 23 33 0 0 chr12 10914554 10914584 -132871871 + AT_rich Low_complexity Low_complexity 1 30 0 36 53 0 0 chr12 10915545 10915602 -132870853 + AT_rich Low_complexity Low_complexity 1 57 0 2109 117 7 0 chr12 10915602 10915902 -132870553 + AluSx SINE Alu 1 302 -10 313 247 106 0 chr12 10916297 10916382 -132870073 + MIR SINE MIR 74 167 -95 381 299 68 14 chr12 10916929 10917076 -132869379 + MIR SINE MIR 32 186 -76 228 24 73 0 chr12 10917543 10917584 -132868871 + T-rich Low_complexity Low_complexity 2 45 0 2297 108 0 0 chr12 10917600 10917905 -132868550 + AluSx SINE Alu 1 305 -7 27 29 0 0 chr12 10918084 10918118 -132868337 + AT_rich Low_complexity Low_complexity 1 34 0 385 97 28 56 chr12 10918937 10918998 -132867457 - AluSc SINE Alu -2 297 237 1476 85 5 15 chr12 10918998 10919197 -132867258 - AluSc SINE Alu -112 197 1 2257 113 3 0 chr12 10919835 10920145 -132866310 - AluSq SINE Alu 0 313 3 767 202 17 17 chr12 10920150 10920323 -132866132 - AluSg/x SINE Alu 0 312 140 3522 113 54 13 chr12 10920432 10921091 -132865364 - HERVH LTR ERV1 -7093 620 1 2548 95 71 9 chr12 10921093 10921513 -132864942 - LTR7 LTR ERV1 -2 448 3 486 108 0 36 chr12 10921642 10921708 -132864747 - L1M1 LINE L1 -557 5743 5679 3055 147 16 0 chr12 10921708 10922219 -132864236 + L1MA4 LINE L1 5777 6296 -4 486 108 0 36 chr12 10922219 10922235 -132864220 - L1M1 LINE L1 -621 5679 5664 515 238 79 58 chr12 10922644 10922833 -132863622 + MIR SINE MIR 24 216 -46 329 265 106 45 chr12 10922913 10923177 -132863278 - L1 LINE L1 -1506 4640 4361 21 36 0 0 chr12 10923205 10923233 -132863222 + AT_rich Low_complexity Low_complexity 1 28 0 344 83 150 0 chr12 10923658 10923718 -132862737 + MADE1 DNA Mariner 2 70 -10 278 75 0 0 chr12 10923718 10923758 -132862697 + MADE1 DNA Mariner 40 79 -1 335 302 147 70 chr12 10925702 10925998 -132860457 + L2 LINE L2 793 1125 -2189 1247 207 50 47 chr12 10925998 10926325 -132860130 + AluJo SINE Alu 1 312 0 335 302 147 70 chr12 10926325 10926402 -132860053 + L2 LINE L2 1125 1195 -2119 1232 312 70 36 chr12 10926496 10927404 -132859051 + L2 LINE L2 1475 2413 -901 455 259 53 103 chr12 10927430 10927640 -132858815 - MIR SINE MIR -11 251 32 2372 132 28 8 chr12 10927640 10927997 -132858458 + THE1B LTR MaLR 1 364 0 10890 104 27 1 chr12 10927997 10929538 -132856917 + THE1B-int LTR MaLR 1 1580 0 2335 116 30 25 chr12 10929538 10929900 -132856555 + THE1B LTR MaLR 1 364 0 455 259 53 103 chr12 10929900 10929950 -132856505 - MIR SINE MIR -227 35 2 418 335 19 12 chr12 10930529 10930690 -132855765 + L2 LINE L2 3151 3312 -1 234 191 0 44 chr12 10930696 10930764 -132855691 + (TAAA)n Simple_repeat Simple_repeat 3 67 0 201 74 0 0 chr12 10931697 10931724 -132854731 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 948 138 12 31 chr12 10933126 10933286 -132853169 + AluSg/x SINE Alu 156 312 0 3147 163 25 33 chr12 10935465 10936072 -132850383 - L1PB4 LINE L1 -10 6146 5545 194 150 25 0 chr12 10936906 10936946 -132849509 + (TATG)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr12 10937129 10937152 -132849303 + AT_rich Low_complexity Low_complexity 1 23 0 929 148 448 20 chr12 10937779 10938136 -132848319 - MER4B LTR ERV1 -99 511 2 8776 135 50 24 chr12 10938137 10939341 -132847114 - MER4B-int LTR ERV1 0 6758 5440 2095 134 0 0 chr12 10939341 10939632 -132846823 + AluSx SINE Alu 1 291 -21 8776 135 50 24 chr12 10939632 10940549 -132845906 - MER4B-int LTR ERV1 -1318 5440 4549 185 59 59 0 chr12 10940549 10940583 -132845872 + T-rich Low_complexity Low_complexity 2 37 0 1360 119 0 0 chr12 10940608 10940801 -132845654 - AluSq SINE Alu 0 313 121 803 78 9 0 chr12 10940801 10940917 -132845538 + THE1C-int LTR MaLR 1463 1579 -1 839 132 16 8 chr12 10940918 10941047 -132845408 + THE1C LTR MaLR 1 130 -245 7593 27 2 0 chr12 10941047 10942189 -132844266 + L1PA4 LINE L1 5012 6155 0 10747 146 25 3 chr12 10942189 10943968 -132842487 + Tigger1 DNA MER2_type 602 2418 0 213 374 87 0 chr12 10943980 10944095 -132842360 - MIR SINE MIR -136 126 2 298 297 159 33 chr12 10944515 10944697 -132841758 - MIR SINE MIR 0 262 58 226 291 23 12 chr12 10945417 10945503 -132840952 - MIR SINE MIR -108 154 68 626 341 57 43 chr12 10946698 10947135 -132839320 - L2 LINE L2 -34 3279 2837 23 54 0 0 chr12 10947208 10947245 -132839210 + AT_rich Low_complexity Low_complexity 1 37 0 306 206 0 0 chr12 10947617 10947690 -132838765 + (CA)n Simple_repeat Simple_repeat 2 74 0 395 314 40 40 chr12 10948571 10948797 -132837658 + L2 LINE L2 3088 3313 0 351 0 0 0 chr12 10951459 10951498 -132834957 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2408 60 0 7 chr12 10954701 10955000 -132831455 - AluY SINE Alu -14 297 1 2624 33 0 0 chr12 10955260 10955560 -132830895 - AluY SINE Alu -10 301 2 1860 168 7 7 chr12 10956452 10956756 -132829699 + AluJb SINE Alu 2 305 -7 3958 176 45 1 chr12 10956821 10957582 -132828873 - LTR1B LTR ERV1 0 826 33 1357 65 0 0 chr12 10957597 10957767 -132828688 - L1PA5 LINE L1 -12 6142 5973 313 104 0 0 chr12 10957770 10957818 -132828637 - LTR1B LTR ERV1 -778 48 1 242 292 72 77 chr12 10957939 10958148 -132828307 - L2 LINE L2 -2 3311 3104 370 297 34 0 chr12 10958370 10958488 -132827967 - MIR SINE MIR -123 139 18 2100 310 83 66 chr12 10958900 10959593 -132826862 - L2 LINE L2 -778 2536 1857 2532 68 0 0 chr12 10959593 10959904 -132826551 + AluY SINE Alu 1 311 0 2100 310 83 66 chr12 10959904 10960911 -132825544 - L2 LINE L2 -1457 1857 806 524 212 23 15 chr12 10960922 10961054 -132825401 + MER3 DNA MER1_type 1 133 -76 182 61 0 30 chr12 10961055 10961088 -132825367 + (TTTAA)n Simple_repeat Simple_repeat 1 32 0 484 313 81 26 chr12 10961167 10961439 -132825016 - L2 LINE L2 -2521 793 507 754 191 148 39 chr12 10961714 10961971 -132824484 + LTR12 LTR ERV1 1 285 -429 292 221 0 0 chr12 10961972 10962040 -132824415 + LTR30 LTR ERV1 553 620 -102 705 153 24 0 chr12 10962040 10962164 -132824291 + LTR12 LTR ERV1 355 481 -233 257 192 0 0 chr12 10962739 10962791 -132823664 - MLT1D LTR MaLR 0 505 454 324 64 0 0 chr12 10962974 10963021 -132823434 + (TC)n Simple_repeat Simple_repeat 2 48 0 297 0 0 0 chr12 10963021 10963054 -132823401 + (CA)n Simple_repeat Simple_repeat 1 33 0 366 299 28 9 chr12 10964279 10964406 -132822049 - MIR SINE MIR -62 146 23 1274 51 0 0 chr12 10965220 10965377 -132821078 - L1PA3 LINE L1 -3 6152 5996 183 236 42 56 chr12 10966797 10966869 -132819586 - MER5A DNA MER1_type 0 189 119 27 96 0 0 chr12 10967098 10967181 -132819274 + AT_rich Low_complexity Low_complexity 1 83 0 418 277 43 18 chr12 10968816 10968962 -132817493 - MIR SINE MIR -63 145 33 539 230 48 62 chr12 10968997 10969206 -132817249 + Charlie2a DNA MER1_type 1466 1671 -1191 348 219 73 0 chr12 10969219 10969342 -132817113 + Charlie2a DNA MER1_type 2729 2860 -2 27 62 0 0 chr12 10969376 10969424 -132817031 + AT_rich Low_complexity Low_complexity 1 48 0 1146 214 20 3 chr12 10969454 10969749 -132816706 - L1MA4 LINE L1 -6 6294 5995 28 0 0 0 chr12 10971116 10971144 -132815311 + AT_rich Low_complexity Low_complexity 1 28 0 1817 155 7 7 chr12 10971984 10972274 -132814181 - AluJb SINE Alu -22 290 1 2429 137 14 28 chr12 10973657 10974079 -132812376 + MSTA LTR MaLR 1 416 -12 354 342 6 31 chr12 10974088 10974249 -132812206 + MER5B DNA MER1_type 5 161 -17 572 232 34 57 chr12 10974546 10974723 -132811732 - MER5B DNA MER1_type -1 177 5 511 140 9 19 chr12 10975202 10975309 -132811146 + CT-rich Low_complexity Low_complexity 4 109 0 26 0 0 0 chr12 10975332 10975358 -132811097 + AT_rich Low_complexity Low_complexity 1 26 0 861 201 67 128 chr12 10975531 10975823 -132810632 - MLT1A1 LTR MaLR 0 365 101 1730 183 0 32 chr12 10975823 10976135 -132810320 - AluJo SINE Alu -10 302 1 861 201 67 128 chr12 10976135 10976231 -132810224 - MLT1A1 LTR MaLR -264 101 1 182 333 62 31 chr12 10977472 10977568 -132808887 - MIR SINE MIR -64 144 46 24 0 0 0 chr12 10977641 10977665 -132808790 + AT_rich Low_complexity Low_complexity 1 24 0 2414 182 26 28 chr12 10977926 10978469 -132807986 - L1MA10 LINE L1 -7 6327 5786 835 188 0 17 chr12 10978469 10978645 -132807810 + L1MA10 LINE L1 5614 5786 -514 3796 47 2 2 chr12 10979054 10979521 -132806934 + L1PA8 LINE L1 5699 6165 -7 2603 87 52 0 chr12 10979553 10979899 -132806556 + THE1B LTR MaLR 1 364 0 207 0 0 0 chr12 10980338 10980361 -132806094 + (CCTG)n Simple_repeat Simple_repeat 1 23 0 667 167 10 0 chr12 10980361 10980562 -132805893 + CT-rich Low_complexity Low_complexity 1 203 0 282 266 53 0 chr12 10981469 10981563 -132804892 + MIR SINE MIR 80 178 -84 298 159 0 72 chr12 10981986 10982055 -132804400 + L1M3 LINE L1 5713 5776 -392 180 0 0 0 chr12 10982059 10982079 -132804376 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 306 0 0 0 chr12 10982078 10982112 -132804343 + (TA)n Simple_repeat Simple_repeat 1 34 0 1535 197 69 54 chr12 10982411 10982779 -132803676 - L1MC2 LINE L1 -311 6033 5655 3533 113 4 4 chr12 10982779 10983290 -132803165 + MER9 LTR ERVK 1 511 0 1535 197 69 54 chr12 10983290 10983368 -132803087 - L1MC2 LINE L1 -689 5655 5580 331 208 42 25 chr12 10983378 10983498 -132802957 - MER52C LTR ERV1 -803 475 354 478 207 0 0 chr12 10984449 10984531 -132801924 + AluJ/FLAM SINE Alu 3 84 -228 1319 170 8 0 chr12 10984806 10985047 -132801408 + L1MC/D LINE L1 5389 5631 -713 500 128 12 0 chr12 10985048 10985134 -132801321 + MER52C LTR ERV1 1192 1278 0 1115 280 82 102 chr12 10985136 10985192 -132801263 + L2 LINE L2 1532 1588 -1726 2469 65 0 3 chr12 10985192 10985499 -132800956 - AluY SINE Alu -5 306 1 1115 280 82 102 chr12 10985499 10986468 -132799987 + L2 LINE L2 1588 2536 -778 454 291 33 4 chr12 10986875 10987036 -132799419 + MIR SINE MIR 2 166 -68 4112 148 57 22 chr12 10987456 10988215 -132798240 - LTR1 LTR ERV1 0 785 1 1552 181 36 23 chr12 10988407 10988711 -132797744 - AluJb SINE Alu -2 310 3 192 103 0 0 chr12 10989704 10989733 -132796722 - L2 LINE L2 0 3313 3285 3802 160 79 31 chr12 10989738 10990563 -132795892 - MER6 DNA MER2_type 0 865 2 1764 176 0 0 chr12 10992621 10992926 -132793529 - AluSx SINE Alu 0 309 5 2462 64 0 0 chr12 10993260 10993557 -132792898 - AluY SINE Alu -14 297 1 2062 112 6 16 chr12 10993768 10994080 -132792375 + AluSx SINE Alu 1 309 -3 455 263 102 44 chr12 10995308 10995513 -132790942 - L2 LINE L2 -1 3312 3096 252 0 0 0 chr12 10996419 10996447 -132790008 + (TG)n Simple_repeat Simple_repeat 2 29 0 204 40 0 0 chr12 10996471 10996496 -132789959 + (TA)n Simple_repeat Simple_repeat 2 26 0 2026 115 4 0 chr12 10996506 10996784 -132789671 - AluSc SINE Alu -30 279 1 23 0 0 0 chr12 10997153 10997176 -132789279 + AT_rich Low_complexity Low_complexity 1 23 0 815 345 29 31 chr12 10997237 10997684 -132788771 + L2 LINE L2 2834 3279 -34 183 354 63 0 chr12 10998887 10998966 -132787489 + MIR SINE MIR 68 151 -111 245 374 0 0 chr12 10999033 10999116 -132787339 + L2 LINE L2 3160 3242 -30 456 323 40 20 chr12 10999628 10999829 -132786626 + MIR SINE MIR 58 262 0 1975 157 16 30 chr12 11000393 11000756 -132785699 - Tigger1 DNA MER2_type 0 2418 2061 2789 7 0 3 chr12 11000756 11001061 -132785394 + AluYb8 SINE Alu 1 304 -14 270 105 0 0 chr12 11001061 11001099 -132785356 + AluJ/F(R)AM SINE Alu 134 171 -131 617 89 44 0 chr12 11001099 11001189 -132785266 + AluSc SINE Alu 202 295 -14 12610 141 17 13 chr12 11001189 11003251 -132783204 - Tigger1 DNA MER2_type -348 2070 1 251 279 39 29 chr12 11003261 11003365 -132783090 + MIR SINE MIR 147 251 -11 2352 88 0 0 chr12 11003728 11004025 -132782430 + AluSq SINE Alu 1 297 -16 26 0 0 0 chr12 11004027 11004053 -132782402 + AT_rich Low_complexity Low_complexity 1 26 0 323 243 97 56 chr12 11004053 11004197 -132782258 + LTR33 LTR ERVL 3 152 -369 468 231 26 0 chr12 11004292 11004409 -132782046 + LTR33 LTR ERVL 400 519 -2 404 285 108 19 chr12 11004826 11004984 -132781471 + MLT1J2 LTR MaLR 279 450 0 1470 214 120 37 chr12 11006025 11006483 -132779972 - MLT1D LTR MaLR -9 496 1 25 0 0 0 chr12 11007648 11007673 -132778782 + AT_rich Low_complexity Low_complexity 1 25 0 2380 93 0 6 chr12 11008580 11008891 -132777564 + AluSx SINE Alu 1 309 -3 227 208 19 19 chr12 11009033 11009086 -132777369 + L1ME4a LINE L1 5613 5665 -2143 606 102 61 0 chr12 11009247 11009345 -132777110 + L1PA16 LINE L1 6054 6157 -9 28 29 0 0 chr12 11010131 11010166 -132776289 + AT_rich Low_complexity Low_complexity 1 35 0 487 325 35 43 chr12 11010285 11010630 -132775825 + L1ME4a LINE L1 5744 6085 -36 1735 130 30 47 chr12 11011350 11011651 -132774804 - AluSx SINE Alu -16 296 1 1042 261 54 39 chr12 11011957 11012439 -132774016 + L1MD1 LINE L1 4715 5203 -943 639 130 148 0 chr12 11012447 11012555 -132773900 + AluJb SINE Alu 1 124 -188 4309 189 22 3 chr12 11012560 11013484 -132772971 + L1MD1 LINE L1 5188 6128 -114 264 208 31 31 chr12 11013483 11013579 -132772876 + L1MC4a LINE L1 5829 5924 -1884 * 2009 129 26 3 chr12 11016540 11016842 -132769613 + AluSq SINE Alu 1 309 -4 29 0 0 0 chr12 11018796 11018825 -132767630 + AT_rich Low_complexity Low_complexity 1 29 0 379 246 87 14 chr12 11019180 11019318 -132767137 + MIR SINE MIR 109 256 -6 219 231 0 19 chr12 11019654 11019706 -132766749 + L2 LINE L2 3255 3305 -8 2202 162 10 12 chr12 11021848 11022249 -132764206 + MER57A LTR ERV1 4 403 0 192 280 103 19 chr12 11022366 11022473 -132763982 - MIR SINE MIR -56 206 91 229 347 66 0 chr12 11024594 11024715 -132761740 + MIR SINE MIR 97 225 -37 2335 166 39 12 chr12 11024782 11025197 -132761258 + MSTB LTR MaLR 1 426 0 234 267 0 89 chr12 11025330 11025431 -132761024 + MIR SINE MIR 41 132 -76 293 47 23 0 chr12 11025443 11025486 -132760969 + (TC)n Simple_repeat Simple_repeat 1 44 0 191 296 0 0 chr12 11025561 11025605 -132760850 + L2 LINE L2 3137 3180 -92 1612 201 0 3 chr12 11025605 11025894 -132760561 + AluJb SINE Alu 1 288 -24 580 110 0 22 chr12 11026883 11026974 -132759481 - AluJb SINE Alu -32 280 192 22 70 0 0 chr12 11026974 11027017 -132759438 + AT_rich Low_complexity Low_complexity 1 43 0 213 395 0 0 chr12 11028605 11028681 -132757774 - L2 LINE L2 -16 3256 3181 180 0 0 0 chr12 11029286 11029306 -132757149 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 195 378 25 17 chr12 11029471 11029590 -132756865 + MIR SINE MIR 137 256 -6 287 238 0 0 chr12 11029622 11029685 -132756770 + MER117 DNA MER1_type 44 106 -91 194 155 35 0 chr12 11030123 11030181 -132756274 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 248 184 0 0 chr12 11030182 11030220 -132756235 + Alu SINE Alu 244 281 -21 859 330 145 22 chr12 11030691 11031414 -132755041 + L2 LINE L2 2347 3156 -157 375 302 9 0 chr12 11031415 11031521 -132754934 + MER81 DNA DNA 1 107 -7 2085 153 113 8 chr12 11031521 11031912 -132754543 + MSTB1 LTR MaLR 1 432 0 211 211 39 39 chr12 11031948 11032000 -132754455 + L2 LINE L2 3183 3234 -79 847 129 0 0 chr12 11032352 11032468 -132753987 + FLAM_C SINE Alu 1 116 -27 283 234 109 0 chr12 11032491 11032555 -132753900 - MER33 DNA MER1_type -252 72 2 385 132 440 0 chr12 11032920 11033011 -132753444 + AluYb8 SINE Alu 1 131 -177 237 98 0 0 chr12 11034731 11034772 -132751683 + (CA)n Simple_repeat Simple_repeat 2 42 0 3948 240 85 43 chr12 11035315 11036043 -132750412 - L1ME1 LINE L1 -5 6161 5464 2241 100 0 0 chr12 11036043 11036334 -132750121 - AluSq SINE Alu -21 292 2 3948 240 85 43 chr12 11036334 11036512 -132749943 - L1ME1 LINE L1 -702 5464 5295 2170 102 24 3 chr12 11036512 11036805 -132749650 - AluSx SINE Alu -13 299 1 3948 240 85 43 chr12 11036805 11038266 -132748189 - L1ME1 LINE L1 -871 5295 3896 1539 186 0 40 chr12 11038266 11038567 -132747888 - AluJb SINE Alu -23 289 1 2263 98 3 0 chr12 11038572 11038869 -132747586 - AluSx SINE Alu -14 298 1 3948 240 85 43 chr12 11038869 11039078 -132747377 - L1ME1 LINE L1 -2273 3893 3694 2309 74 7 0 chr12 11039078 11039377 -132747078 - AluSg SINE Alu -9 301 1 3948 240 85 43 chr12 11039377 11039643 -132746812 - L1ME1 LINE L1 -2472 3694 3193 403 305 91 85 chr12 11039692 11040210 -132746245 + L1PA13 LINE L1 924 1444 -6130 4261 227 45 24 chr12 11040634 11041063 -132745392 + L1PA13 LINE L1 2244 2663 -4921 2030 126 0 7 chr12 11041063 11041376 -132745079 - AluSx SINE Alu 0 311 1 4261 227 45 24 chr12 11041376 11041736 -132744719 + L1PA13 LINE L1 2663 3014 -4570 2175 107 13 0 chr12 11041736 11042034 -132744421 + AluSq SINE Alu 1 302 -11 4261 227 45 24 chr12 11042034 11042548 -132743907 + L1PA13 LINE L1 3014 3582 -4002 2178 121 0 3 chr12 11042552 11042849 -132743606 + AluSx SINE Alu 1 296 -16 1210 128 0 0 chr12 11042856 11043028 -132743427 + AluSg/x SINE Alu 141 312 0 5192 216 32 99 chr12 11043028 11043651 -132742804 + L1P LINE L1 4570 5233 -2351 838 161 8 0 chr12 11043651 11043781 -132742674 + FLAM_C SINE Alu 1 131 -12 5192 216 32 99 chr12 11043781 11044859 -132741596 + L1P LINE L1 5233 6277 -1307 2167 122 0 0 chr12 11044861 11045156 -132741299 + AluSx SINE Alu 3 297 -15 375 302 9 0 chr12 11045600 11045706 -132740749 + MER81 DNA DNA 1 107 -7 2085 153 113 8 chr12 11045706 11046097 -132740358 + MSTB1 LTR MaLR 1 432 0 211 211 39 39 chr12 11046133 11046185 -132740270 + L2 LINE L2 3183 3234 -79 24 0 0 29 chr12 11046518 11046537 -132739918 + AT_rich Low_complexity Low_complexity 1 20 -14 1878 146 16 13 chr12 11046537 11046846 -132739609 + AluSx SINE Alu 1 310 -2 24 0 0 29 chr12 11046846 11046861 -132739594 + AT_rich Low_complexity Low_complexity 20 34 0 388 244 67 0 chr12 11046861 11046951 -132739504 - FLAM_A SINE Alu -13 120 25 1879 152 0 48 chr12 11047025 11047341 -132739114 + AluSx SINE Alu 2 302 -10 253 330 78 39 chr12 11047703 11047882 -132738573 + MER5A DNA MER1_type 1 186 -3 221 313 9 71 chr12 11048484 11048596 -132737859 + MIR SINE MIR 1 105 -157 16331 164 43 29 chr12 11048632 11050466 -132735989 + L1PBa LINE L1 2 1807 -5055 2078 138 0 13 chr12 11050466 11050770 -132735685 - AluSx SINE Alu -12 300 1 16331 164 43 29 chr12 11050770 11051184 -132735271 + L1PBa LINE L1 1807 2213 -4649 982 115 8 184 chr12 11051184 11051418 -132735037 + 7SK RNA RNA 1 193 0 16331 164 43 29 chr12 11051418 11051538 -132734917 + L1PBa LINE L1 2213 2330 -4532 2434 93 0 0 chr12 11051538 11051849 -132734606 + AluY SINE Alu 1 311 0 16331 164 43 29 chr12 11051849 11052194 -132734261 + L1PBa LINE L1 2330 2668 -4194 423 0 0 0 chr12 11052194 11052241 -132734214 + (CA)n Simple_repeat Simple_repeat 2 48 0 16331 164 43 29 chr12 11052241 11053921 -132732534 + L1PBa LINE L1 2668 4466 -2396 2177 114 3 0 chr12 11053921 11054220 -132732235 + AluSx SINE Alu 1 300 -12 16331 164 43 29 chr12 11054220 11054467 -132731988 + L1PBa LINE L1 4466 4708 -2154 291 71 0 0 chr12 11054469 11054511 -132731944 + (TA)n Simple_repeat Simple_repeat 2 43 0 263 204 0 0 chr12 11054644 11054693 -132731762 + MIR SINE MIR 191 239 -23 21 0 0 0 chr12 11054706 11054727 -132731728 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 11054800 11054821 -132731634 + (CA)n Simple_repeat Simple_repeat 2 22 0 1890 163 0 0 chr12 11054943 11055231 -132731224 - AluJb SINE Alu -24 288 1 234 91 0 0 chr12 11055582 11055615 -132730840 + (ATG)n Simple_repeat Simple_repeat 2 34 0 991 174 63 28 chr12 11055796 11055831 -132730624 - MER33 DNA MER1_type -2261 324 292 189 0 0 0 chr12 11055831 11055852 -132730603 + (TA)n Simple_repeat Simple_repeat 2 22 0 991 174 63 28 chr12 11055852 11056069 -132730386 - MER33 DNA MER1_type -2293 292 63 856 121 0 0 chr12 11056069 11056185 -132730270 + FLAM_C SINE Alu 1 116 -27 288 234 109 0 chr12 11056208 11056272 -132730183 - MER33 DNA MER1_type -252 72 2 351 133 456 0 chr12 11056638 11056728 -132729727 + AluYb8 SINE Alu 1 131 -177 237 98 0 0 chr12 11058449 11058490 -132727965 + (CA)n Simple_repeat Simple_repeat 2 42 0 4293 241 92 38 chr12 11059033 11059761 -132726694 - L1ME1 LINE L1 -5 6230 5543 2248 100 0 0 chr12 11059761 11060052 -132726403 - AluSq SINE Alu -21 292 2 4293 241 92 38 chr12 11060052 11060217 -132726238 - L1ME1 LINE L1 -692 5543 5388 2183 108 23 3 chr12 11060217 11060523 -132725932 - AluSx SINE Alu 0 312 1 4293 241 92 38 chr12 11060523 11061958 -132724497 - L1ME1 LINE L1 -847 5388 4033 1542 186 0 49 chr12 11061958 11062286 -132724169 - AluJb SINE Alu 0 312 1 2280 98 3 0 chr12 11062291 11062588 -132723867 - AluSx SINE Alu -14 298 1 4293 241 92 38 chr12 11062588 11062797 -132723658 - L1ME1 LINE L1 -2205 4030 3834 2328 74 7 0 chr12 11062797 11063096 -132723359 - AluSg SINE Alu -9 301 1 4293 241 92 38 chr12 11063096 11063362 -132723093 - L1ME1 LINE L1 -2401 3834 3262 395 301 93 87 chr12 11063411 11063929 -132722526 + L1PA16 LINE L1 924 1444 -6130 983 272 86 22 chr12 11064353 11064724 -132721731 + L1PA16 LINE L1 2244 2638 -4943 812 173 127 0 chr12 11064845 11065018 -132721437 + L1 LINE L1 3603 3797 -2349 835 151 8 0 chr12 11065021 11065147 -132721308 + FLAM_C SINE Alu 5 131 -12 6557 181 12 23 chr12 11065160 11066662 -132719793 + L1PA16 LINE L1 5213 6695 -909 2382 110 0 0 chr12 11066662 11066971 -132719484 + AluSq SINE Alu 1 309 -4 6557 181 12 23 chr12 11066971 11067862 -132718593 + L1PA16 LINE L1 6695 7595 -9 1671 242 51 127 chr12 11067876 11068441 -132718014 - L1ME1 LINE L1 -2944 3271 2665 934 112 62 12 chr12 11068441 11068602 -132717853 - AluSg/x SINE Alu -9 303 135 1671 242 51 127 chr12 11068602 11068615 -132717840 - L1ME1 LINE L1 -3550 2665 2653 1923 116 43 0 chr12 11068615 11068892 -132717563 - AluSq SINE Alu -24 289 1 1671 242 51 127 chr12 11068892 11069424 -132717031 - L1ME1 LINE L1 -3562 2653 2082 2446 77 3 3 chr12 11069424 11069735 -132716720 - AluY SINE Alu 0 311 1 1671 242 51 127 chr12 11069735 11070257 -132716198 - L1ME1 LINE L1 -4133 2082 1196 249 204 0 19 chr12 11070258 11070312 -132716143 + CT-rich Low_complexity Low_complexity 1 53 0 2382 69 23 3 chr12 11070318 11070655 -132715800 - AluY SINE Alu 0 343 1 2811 278 65 19 chr12 11070741 11071825 -132714630 - L1ME1 LINE L1 -5227 1169 37 517 244 160 6 chr12 11072232 11072388 -132714067 + MER58C DNA MER1_type 36 215 0 604 339 45 4 chr12 11072435 11072677 -132713778 + MIR SINE MIR 8 259 -3 2182 128 3 0 chr12 11073162 11073466 -132712989 - AluSx SINE Alu -7 305 1 22 94 0 0 chr12 11073695 11073759 -132712696 + AT_rich Low_complexity Low_complexity 1 64 0 2000 149 3 0 chr12 11074261 11074556 -132711899 - AluSx SINE Alu -16 296 1 227 286 114 21 chr12 11074710 11074850 -132711605 - L2 LINE L2 0 3313 3161 22 0 0 0 chr12 11074964 11074986 -132711469 + AT_rich Low_complexity Low_complexity 1 22 0 298 323 71 32 chr12 11075307 11075462 -132710993 - MIR SINE MIR -43 219 59 207 0 0 0 chr12 11075585 11075608 -132710847 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1796 135 60 0 chr12 11075610 11075876 -132710579 - AluSx SINE Alu -26 286 5 2016 134 7 10 chr12 11075879 11076186 -132710269 - AluSx SINE Alu -6 306 1 869 132 0 0 chr12 11076823 11076952 -132709503 + AluSg/x SINE Alu 164 292 -20 190 289 144 29 chr12 11077998 11078102 -132708353 + MER5A DNA MER1_type 72 187 -2 2435 75 0 0 chr12 11078350 11078643 -132707812 + AluSg SINE Alu 1 293 -17 881 390 13 84 chr12 11079680 11079988 -132706467 + AluSq SINE Alu 1 286 -17 225 0 0 0 chr12 11079995 11080020 -132706435 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 2264 79 10 10 chr12 11080127 11080419 -132706036 - AluY SINE Alu -19 292 1 2018 144 7 3 chr12 11080956 11081261 -132705194 - AluSx SINE Alu -6 306 1 21 36 0 0 chr12 11081594 11081622 -132704833 + AT_rich Low_complexity Low_complexity 1 28 0 2423 87 3 3 chr12 11081700 11082011 -132704444 + AluSp SINE Alu 2 312 -1 223 193 0 53 chr12 11082094 11082151 -132704304 + MIR SINE MIR 75 128 -134 2013 109 3 7 chr12 11082157 11082450 -132704005 - AluSx SINE Alu -20 292 1 205 51 51 0 chr12 11082632 11082671 -132703784 + A-rich Low_complexity Low_complexity 2 42 0 22 0 0 0 chr12 11082731 11082753 -132703702 + AT_rich Low_complexity Low_complexity 1 22 0 385 243 10 19 chr12 11082993 11083096 -132703359 + MIR SINE MIR 56 157 -105 274 336 76 0 chr12 11083309 11083440 -132703015 - MIR3 SINE MIR -20 188 48 413 302 0 34 chr12 11083733 11083882 -132702573 + MIR SINE MIR 1 144 -118 23 0 0 0 chr12 11085261 11085284 -132701171 + GC_rich Low_complexity Low_complexity 1 23 0 2152 73 31 0 chr12 11086295 11086582 -132699873 + AluSp SINE Alu 1 296 -17 1928 142 7 0 chr12 11087025 11087327 -132699128 + AluJb SINE Alu 1 304 -8 1579 72 0 45 chr12 11087329 11087550 -132698905 + AluSc SINE Alu 1 211 -98 561 77 4 7 chr12 11087596 11087831 -132698624 + AluY SINE Alu 1 295 -14 1991 119 3 16 chr12 11087922 11088234 -132698221 - AluSq SINE Alu -5 308 1 1975 111 4 0 chr12 11088364 11088661 -132697794 - AluSx SINE Alu 0 311 14 2000 149 3 0 chr12 11089217 11089518 -132696937 + AluJb SINE Alu 1 302 -10 285 104 60 15 chr12 11089632 11089646 -132696809 + GA-rich Low_complexity Low_complexity 3 15 -57 2191 116 0 0 chr12 11089646 11089939 -132696516 + AluSx SINE Alu 12 304 -8 285 104 60 15 chr12 11089939 11089991 -132696464 + GA-rich Low_complexity Low_complexity 15 72 0 955 105 11 28 chr12 11089991 11090172 -132696283 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 2308 115 3 3 chr12 11091188 11091500 -132694955 + AluSp SINE Alu 1 312 -1 223 193 0 53 chr12 11091583 11091640 -132694815 + MIR SINE MIR 75 128 -134 2013 109 3 7 chr12 11091646 11091939 -132694516 - AluSx SINE Alu -20 292 1 205 51 51 0 chr12 11092121 11092160 -132694295 + A-rich Low_complexity Low_complexity 2 42 0 22 0 0 0 chr12 11092220 11092242 -132694213 + AT_rich Low_complexity Low_complexity 1 22 0 385 243 10 19 chr12 11092482 11092585 -132693870 + MIR SINE MIR 56 157 -105 274 336 76 0 chr12 11092798 11092929 -132693526 - MIR3 SINE MIR -20 188 48 413 302 0 34 chr12 11093222 11093371 -132693084 + MIR SINE MIR 1 144 -118 23 0 0 0 chr12 11094750 11094773 -132691682 + GC_rich Low_complexity Low_complexity 1 23 0 2152 73 31 0 chr12 11095786 11096073 -132690382 + AluSp SINE Alu 1 296 -17 2304 106 3 0 chr12 11096928 11097231 -132689224 - AluSx SINE Alu -8 304 1 2405 79 13 0 chr12 11097258 11097563 -132688892 - AluSq SINE Alu -2 311 3 1606 221 95 42 chr12 11097614 11097660 -132688795 - MLT2B1 LTR ERVL 0 520 478 2188 171 6 0 chr12 11097660 11098004 -132688451 - MER7A DNA MER2_type -1 345 2 1606 221 95 42 chr12 11098004 11098451 -132688004 - MLT2B1 LTR ERVL -42 478 1 216 258 65 32 chr12 11098516 11098578 -132687877 - MER5B DNA MER1_type -10 168 105 229 299 13 13 chr12 11098703 11098780 -132687675 - MER5B DNA MER1_type -101 77 1 2256 123 0 0 chr12 11098960 11099269 -132687186 + AluSg SINE Alu 1 309 -1 1322 147 10 10 chr12 11099269 11099473 -132686982 + AluSg/x SINE Alu 83 286 -24 872 167 20 7 chr12 11099738 11099888 -132686567 - MER6 DNA MER2_type 0 865 714 2325 109 3 0 chr12 11099892 11100203 -132686252 - AluSx SINE Alu 0 312 1 282 242 62 81 chr12 11100203 11100317 -132686138 + MIR SINE MIR 92 204 -58 2412 74 19 10 chr12 11100317 11100626 -132685829 + AluSx SINE Alu 1 312 0 282 242 62 81 chr12 11100626 11100672 -132685783 + MIR SINE MIR 204 249 -13 3665 204 67 16 chr12 11102415 11103178 -132683277 + MER21B LTR ERV1 1 802 -61 1214 86 0 0 chr12 11103436 11103587 -132682868 - AluSg SINE Alu -159 151 1 1456 139 186 31 chr12 11104200 11104340 -132682115 + AluSx SINE Alu 1 118 -184 2217 104 7 0 chr12 11104340 11104629 -132681826 + AluSp SINE Alu 5 295 -18 1456 139 186 31 chr12 11104629 11104746 -132681709 + AluSx SINE Alu 118 298 -4 38 22 0 0 chr12 11104848 11104893 -132681562 + AT_rich Low_complexity Low_complexity 1 45 0 2187 110 3 3 chr12 11105675 11105975 -132680480 - AluSg1 SINE Alu -9 300 1 1817 135 10 34 chr12 11105986 11106160 -132680295 - AluSg SINE Alu -19 291 125 186 43 0 0 chr12 11106160 11106183 -132680272 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1817 135 10 34 chr12 11106183 11106304 -132680151 - AluSg SINE Alu -185 125 3 2048 134 0 13 chr12 11106392 11106699 -132679756 + AluSx SINE Alu 1 303 -9 1652 136 100 0 chr12 11106778 11107058 -132679397 + AluSx SINE Alu 1 308 -4 438 20 0 0 chr12 11107064 11107115 -132679340 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 264 167 0 0 chr12 11107108 11107156 -132679299 + GA-rich Low_complexity Low_complexity 1 48 0 * 1945 113 0 82 chr12 11107162 11107312 -132679143 + AluSx SINE Alu 3 113 -199 2649 45 3 0 chr12 11107312 11107622 -132678833 + AluY SINE Alu 1 311 0 1945 113 0 82 chr12 11107622 11107799 -132678656 + AluSx SINE Alu 113 303 -9 2517 73 3 0 chr12 11107917 11108218 -132678237 + AluSq SINE Alu 1 302 -11 260 257 69 69 chr12 11109775 11109799 -132676656 + MIR SINE MIR 88 111 -151 2098 128 0 0 chr12 11109799 11110096 -132676359 - AluSq SINE Alu -16 297 1 260 257 69 69 chr12 11110096 11110215 -132676240 + MIR SINE MIR 110 231 -31 2372 86 0 0 chr12 11111206 11111535 -132674920 + AluSq SINE Alu 1 329 0 2368 97 0 0 chr12 11111615 11111923 -132674532 + AluSg SINE Alu 3 310 0 2160 122 7 0 chr12 11112226 11112522 -132673933 + AluSx SINE Alu 1 298 -14 472 310 50 76 chr12 11112530 11112661 -132673794 - L2 LINE L2 -423 2891 2758 1748 164 10 7 chr12 11112661 11112965 -132673490 - AluSq SINE Alu -8 305 1 472 310 50 76 chr12 11112965 11113375 -132673080 - L2 LINE L2 -556 2758 2364 256 360 53 16 chr12 11113543 11113732 -132672723 - L2 LINE L2 -938 2376 2181 2613 53 0 0 chr12 11114063 11114364 -132672091 + L1PA4 LINE L1 5852 6152 -3 21 0 0 0 chr12 11114364 11114385 -132672070 + AT_rich Low_complexity Low_complexity 1 21 0 2265 108 0 0 chr12 11114407 11114704 -132671751 + AluSx SINE Alu 2 298 -14 1940 123 28 0 chr12 11115022 11115183 -132671272 - AluSx SINE Alu -19 293 119 240 35 0 0 chr12 11115183 11115212 -132671243 + (TG)n Simple_repeat Simple_repeat 2 30 0 1940 123 28 0 chr12 11115212 11115335 -132671120 - AluSx SINE Alu -193 119 1 774 80 0 0 chr12 11115355 11115455 -132671000 + MER4E LTR ERV1 1 100 -666 423 0 0 0 chr12 11115799 11115846 -132670609 + (TG)n Simple_repeat Simple_repeat 2 48 0 1704 108 9 0 chr12 11115872 11116103 -132670352 - AluSx SINE Alu -79 233 1 738 304 55 22 chr12 11116472 11116978 -132669477 - MLT1G LTR MaLR -1 594 2 2297 80 3 0 chr12 11116983 11117292 -132669163 + AluSp SINE Alu 1 310 0 299 372 22 15 chr12 11117625 11117762 -132668693 + L2 LINE L2 2950 3087 -185 2017 131 3 3 chr12 11117837 11118148 -132668307 + AluSq SINE Alu 1 311 0 2185 162 14 16 chr12 11118384 11118748 -132667707 - MLT1A1 LTR MaLR 0 365 3 1255 240 79 43 chr12 11118949 11119394 -132667061 + MER74B LTR ERVL 69 529 -93 1657 210 91 23 chr12 11119683 11120112 -132666343 + MLT1C LTR MaLR 2 459 -8 2222 117 0 0 chr12 11120159 11120449 -132666006 + AluSx SINE Alu 1 290 -22 471 325 62 29 chr12 11120622 11120896 -132665559 + HAL1 LINE L1 365 647 -1860 2364 93 0 10 chr12 11120964 11121277 -132665178 - AluSx SINE Alu -2 310 1 863 247 129 38 chr12 11121279 11121753 -132664702 + HAL1 LINE L1 785 1301 -1206 540 201 74 113 chr12 11121826 11121865 -132664590 + HAL1 LINE L1 1546 1585 -922 2529 64 0 0 chr12 11121865 11122163 -132664292 - AluY SINE Alu -13 298 1 540 201 74 113 chr12 11122163 11122257 -132664198 + HAL1 LINE L1 1585 1669 -838 2295 104 0 7 chr12 11122257 11122556 -132663899 - AluSx SINE Alu -15 297 1 540 201 74 113 chr12 11122556 11122650 -132663805 + HAL1 LINE L1 1669 1765 -742 514 280 71 16 chr12 11122770 11122952 -132663503 - MIR SINE MIR -59 203 12 719 218 93 96 chr12 11122976 11123330 -132663125 + HAL1 LINE L1 2155 2507 0 2230 92 10 0 chr12 11123348 11123643 -132662812 + AluSp SINE Alu 3 300 -13 2209 118 7 0 chr12 11123818 11124114 -132662341 - AluSx SINE Alu -14 298 1 1441 157 34 4 chr12 11124141 11124403 -132662052 - AluSq SINE Alu -2 311 42 4400 122 42 34 chr12 11124534 11124767 -132661688 + MER4E LTR ERV1 35 265 -514 1963 108 7 24 chr12 11124767 11125079 -132661376 + AluSq SINE Alu 1 307 0 4400 122 42 34 chr12 11125079 11125582 -132660873 + MER4E LTR ERV1 265 778 -1 2336 77 3 0 chr12 11125941 11126274 -132660181 - AluSp SINE Alu 0 334 1 25802 44 40 3 chr12 11126805 11130051 -132656404 - L1P LINE L1 -2162 3984 617 796 42 0 0 chr12 11130045 11130140 -132656315 - L1P LINE L1 -6048 98 4 * 4640 191 13 26 chr12 11130141 11131554 -132654901 - L1M2 LINE L1 -481 5810 4398 9735 97 9 3 chr12 11131554 11133721 -132652734 - L1PA8A LINE L1 0 6131 3951 533 283 6 0 chr12 11133973 11134150 -132652305 - L1P3 LINE L1 -5058 2526 2349 1636 33 0 0 chr12 11134151 11134334 -132652121 - L1PA5 LINE L1 0 6154 5972 427 0 0 0 chr12 11134334 11134380 -132652075 + L1PA5 LINE L1 5898 5943 -211 * 3730 157 10 11 chr12 11134378 11135024 -132651431 - L1MDb LINE L1 -4735 2263 990 314 174 151 0 chr12 11135033 11135119 -132651336 + L1MDb LINE L1 2259 2357 -5230 207 0 0 0 chr12 11135194 11135217 -132651238 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 656 116 0 0 chr12 11135226 11135312 -132651143 - AluSg/x SINE Alu -23 289 204 1804 116 0 8 chr12 11135312 11135562 -132650893 - AluSx SINE Alu -64 248 1 346 229 34 16 chr12 11135923 11136043 -132650412 + L1MDb LINE L1 2342 2465 -5109 3426 206 82 9 chr12 11136045 11136815 -132649640 + L1MD1 LINE L1 5417 6242 0 447 332 21 0 chr12 11136807 11136997 -132649458 + L1MDb LINE L1 2992 3185 -4580 * 24 41 0 20 chr12 11137130 11137150 -132649305 + AT_rich Low_complexity Low_complexity 1 20 -28 3324 115 4 10 chr12 11137150 11137630 -132648825 - L1PB1 LINE L1 0 6151 5675 24 41 0 20 chr12 11137630 11137658 -132648797 + AT_rich Low_complexity Low_complexity 20 48 0 899 47 0 9 chr12 11137658 11137765 -132648690 - L1PA8 LINE L1 -14 6158 6053 8998 134 30 5 chr12 11137765 11138767 -132647688 - L1P3 LINE L1 -5031 1430 383 255 31 0 0 chr12 11138767 11138799 -132647656 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 8998 134 30 5 chr12 11138799 11139187 -132647268 - L1P3 LINE L1 -6078 383 6 707 227 86 20 chr12 11139421 11139738 -132646717 + MSTD LTR MaLR 3 389 -7 3545 129 34 49 chr12 11140015 11140629 -132645826 - MER4E LTR ERV1 -174 605 1 4310 138 24 5 chr12 11141126 11141758 -132644697 - LTR9B LTR ERV1 0 644 1 2112 150 92 28 chr12 11141761 11142194 -132644261 - MER65C LTR ERV1 0 461 1 527 170 30 10 chr12 11142194 11142294 -132644161 - MLT1A2 LTR MaLR -272 102 1 3264 60 21 11 chr12 11142339 11142858 -132643597 + LTR10C LTR ERV1 1 591 0 682 209 111 81 chr12 11142858 11143140 -132643315 + HERVI LTR ERV1 2 289 -6360 189 0 0 0 chr12 11143143 11143164 -132643291 + (A)n Simple_repeat Simple_repeat 1 21 0 303 229 48 29 chr12 11143307 11143412 -132643043 + HERVI LTR ERV1 504 610 -6039 282 152 22 0 chr12 11143404 11143450 -132643005 + HERVI LTR ERV1 975 1021 -5628 * 3458 107 31 2 chr12 11143531 11144010 -132642445 + LTR15 LTR ERV1 1 493 0 6890 152 77 43 chr12 11144010 11145619 -132640836 + HERV15 LTR ERV1 1 1387 -7039 2985 254 30 12 chr12 11145609 11146266 -132640189 + HERV15 LTR ERV1 1704 2372 -6054 * 3060 202 28 14 chr12 11146239 11146819 -132639636 + HERV15 LTR ERV1 3495 4082 -4344 * 4202 222 4 22 chr12 11146810 11147644 -132638811 + HERV15 LTR ERV1 4208 5026 -3400 3540 121 2 2 chr12 11147626 11148130 -132638325 + HERV15 LTR ERV1 8231 8734 -1 * 3444 98 21 0 chr12 11148130 11148597 -132637858 + LTR15 LTR ERV1 1 477 -16 223 258 0 15 chr12 11148620 11148686 -132637769 + GA-rich Low_complexity Low_complexity 3 67 0 303 202 0 0 chr12 11149063 11149147 -132637308 + GA-rich Low_complexity Low_complexity 1 84 0 1121 131 104 0 chr12 11149211 11149432 -132637023 + HERVI LTR ERV1 1919 2162 -4734 316 214 0 0 chr12 11149981 11150065 -132636390 + GA-rich Low_complexity Low_complexity 1 84 0 3527 111 46 5 chr12 11150129 11150732 -132635723 + HERVI LTR ERV1 1919 2546 -4350 4224 294 42 38 chr12 11150908 11152603 -132633852 + HERVI LTR ERV1 4363 6064 -585 293 363 47 13 chr12 11152620 11152854 -132633601 + HERVI LTR ERV1 7543 7784 -1 3419 47 13 1 chr12 11152858 11153376 -132633079 + LTR10C LTR ERV1 1 591 0 1624 247 33 58 chr12 11153376 11153898 -132632557 - MLT1-int LTR MaLR -53 1682 1174 496 252 0 0 chr12 11153944 11154055 -132632400 - MLT1-int LTR MaLR -944 791 681 234 170 0 21 chr12 11154179 11154226 -132632229 - MLT1-int LTR MaLR -635 736 691 27 0 0 0 chr12 11154511 11154538 -132631917 + AT_rich Low_complexity Low_complexity 1 27 0 204 97 0 0 chr12 11154803 11154834 -132631621 + (TG)n Simple_repeat Simple_repeat 1 31 0 1854 173 3 0 chr12 11155123 11155430 -132631025 - AluSx SINE Alu -4 308 1 1877 125 61 7 chr12 11155498 11155795 -132630660 - AluSq SINE Alu 0 313 1 383 362 26 18 chr12 11156404 11156633 -132629822 + MIR SINE MIR 18 248 -14 741 323 21 10 chr12 11157055 11157343 -132629112 + L1ME1 LINE L1 310 600 -5796 947 259 83 4 chr12 11157343 11157802 -132628653 + L1ME1 LINE L1 2739 3233 -2982 1528 255 77 85 chr12 11157813 11157921 -132628534 + L1ME1 LINE L1 5434 5541 -694 2053 124 0 0 chr12 11157921 11158233 -132628222 - AluSx SINE Alu 0 312 1 1528 255 77 85 chr12 11158233 11158924 -132627531 + L1ME1 LINE L1 5541 6228 -7 218 224 103 0 chr12 11158959 11159017 -132627438 + MIR SINE MIR 101 164 -98 1591 133 4 0 chr12 11159987 11160212 -132626243 + AluSx SINE Alu 1 226 -86 982 116 0 0 chr12 11160212 11160350 -132626105 + AluSg/x SINE Alu 163 300 -10 2548 40 3 0 chr12 11161176 11161479 -132624976 - AluY SINE Alu -7 304 1 2153 246 64 76 chr12 11161550 11162336 -132624119 + L1M2b LINE L1 1 776 -6433 2104 161 28 28 chr12 11162320 11162742 -132623713 + L1M2b LINE L1 2759 3180 -4029 * 1210 311 38 46 chr12 11162742 11163302 -132623153 + L1MA5 LINE L1 23 577 -6988 4005 211 29 24 chr12 11163303 11165009 -132621446 + L1MA5 LINE L1 2582 4304 -3261 * 5635 155 39 13 chr12 11165003 11166475 -132619980 + L1MA5 LINE L1 5686 7221 -498 309 26 0 0 chr12 11166475 11166513 -132619942 + (CA)n Simple_repeat Simple_repeat 1 38 0 5635 155 39 13 chr12 11166513 11167025 -132619430 + L1MA5 LINE L1 7221 7718 -1 335 274 82 77 chr12 11167111 11167451 -132619004 - L1MC4a LINE L1 -1926 5882 5541 30 0 0 0 chr12 11167856 11167886 -132618569 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr12 11168587 11168615 -132617840 + AT_rich Low_complexity Low_complexity 1 28 0 1923 113 88 0 chr12 11168676 11168959 -132617496 - AluSx SINE Alu -4 308 1 528 118 0 0 chr12 11169124 11169209 -132617246 - L1PA14 LINE L1 -2 6159 6075 24 53 0 0 chr12 11169215 11169253 -132617202 + AT_rich Low_complexity Low_complexity 1 38 0 192 311 72 78 chr12 11169442 11169622 -132616833 - MIR SINE MIR -50 212 34 265 88 0 0 chr12 11170309 11170343 -132616112 + U2 snRNA snRNA 1 34 -154 185 81 0 54 chr12 11170464 11170501 -132615954 + (CAT)n Simple_repeat Simple_repeat 2 36 0 210 71 0 0 chr12 11171028 11171056 -132615399 + (CA)n Simple_repeat Simple_repeat 2 29 0 302 122 20 0 chr12 11171314 11171363 -132615092 + MADE1 DNA Mariner 1 50 -30 299 299 41 18 chr12 11171415 11171636 -132614819 + L1M4 LINE L1 4574 4799 -1347 25 0 0 0 chr12 11171789 11171814 -132614641 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr12 11171930 11171964 -132614491 + AT_rich Low_complexity Low_complexity 1 34 0 314 319 0 18 chr12 11172107 11172220 -132614235 - L2 LINE L2 -4 3309 3199 2263 105 0 7 chr12 11172225 11172529 -132613926 - AluSq SINE Alu -11 302 1 190 357 0 71 chr12 11175225 11175365 -132611090 - L2 LINE L2 -6 3266 3137 316 120 0 0 chr12 11175738 11175788 -132610667 + LTR5 LTR ERVK 1 50 -919 935 224 53 94 chr12 11175789 11176297 -132610158 + LTR5 LTR ERVK 483 969 0 552 250 52 23 chr12 11176722 11176894 -132609561 + LTR41 LTR ERVL 1 177 -596 1434 165 69 0 chr12 11177361 11177621 -132608834 + AluSx SINE Alu 16 293 -19 241 264 7 88 chr12 11178403 11178551 -132607904 + L1M4 LINE L1 105 240 -6302 2380 148 14 50 chr12 11178856 11179357 -132607098 - L1MA6 LINE L1 0 6300 5818 279 0 0 0 chr12 11179470 11179501 -132606954 + (CA)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr12 11179619 11179642 -132606813 + AT_rich Low_complexity Low_complexity 1 23 0 644 288 51 20 chr12 11179757 11180197 -132606258 + L1M4 LINE L1 1026 1475 -5067 1773 156 9 32 chr12 11180368 11180714 -132605741 - L1MA7 LINE L1 -158 6133 5796 22 0 0 0 chr12 11180726 11180748 -132605707 + AT_rich Low_complexity Low_complexity 1 22 0 11941 25 3 0 chr12 11180748 11182961 -132603494 - L1PA3 LINE L1 0 6155 3978 546 293 67 0 chr12 11183120 11183284 -132603171 - MIR SINE MIR -48 214 40 2095 95 0 30 chr12 11183290 11183595 -132602860 + AluSx SINE Alu 5 300 -12 794 213 6 29 chr12 11183679 11183853 -132602602 - AluJo/FRAM SINE Alu -11 301 132 1509 201 4 0 chr12 11183854 11184128 -132602327 - AluJo SINE Alu -7 305 31 1470 168 0 15 chr12 11184364 11184626 -132601829 - AluJo SINE Alu -54 258 1 2510 148 66 48 chr12 11184715 11185305 -132601150 - L1MB8 LINE L1 -5 6173 5573 334 291 96 49 chr12 11185627 11186119 -132600336 + L1M4 LINE L1 4106 4620 -1526 1012 266 11 7 chr12 11186128 11186406 -132600049 - L1MB7 LINE L1 -11 6173 5895 1518 169 24 56 chr12 11186902 11187194 -132599261 - MER44D DNA MER2_type -1883 604 268 1444 84 75 0 chr12 11187194 11187408 -132599047 - MER30 DNA MER1_type 0 230 1 1518 169 24 56 chr12 11187408 11187452 -132599003 - MER44D DNA MER2_type -2219 268 224 21 0 0 0 chr12 11187579 11187600 -132598855 + AT_rich Low_complexity Low_complexity 1 21 0 230 238 0 16 chr12 11188568 11188631 -132597824 + L1MA10 LINE L1 2 63 -6967 4381 210 59 7 chr12 11188637 11190020 -132596435 + L1MA10 LINE L1 5783 7290 -4 1600 157 68 0 chr12 11190051 11190344 -132596111 + L1MB2 LINE L1 5817 6129 -42 1753 185 71 19 chr12 11190379 11190747 -132595708 + L1MC1 LINE L1 5902 6288 -45 592 251 50 32 chr12 11190749 11190968 -132595487 + L1M4 LINE L1 4761 4983 -1163 4340 161 56 5 chr12 11190975 11191931 -132594524 + L1PA15 LINE L1 5161 6160 -5 29 0 0 0 chr12 11192026 11192055 -132594400 + AT_rich Low_complexity Low_complexity 1 29 0 430 291 157 22 chr12 11192131 11192495 -132593960 + L1 LINE L1 2227 2639 -3507 232 179 45 0 chr12 11192665 11192732 -132593723 - Charlie5 DNA MER1_type -2490 122 53 322 312 65 0 chr12 11192761 11192931 -132593524 + L1 LINE L1 2778 2958 -3188 306 289 78 58 chr12 11193007 11193546 -132592909 + L1 LINE L1 3080 3629 -2517 388 329 101 39 chr12 11193613 11193969 -132592486 + L1 LINE L1 3763 4140 -2006 1807 145 65 6 chr12 11193970 11194307 -132592148 + L1 LINE L1 4578 4934 -1212 2659 202 13 13 chr12 11194327 11194861 -132591594 - MER44D DNA MER2_type -1 604 16 27 73 0 0 chr12 11195112 11195167 -132591288 + AT_rich Low_complexity Low_complexity 1 55 0 1531 292 72 8 chr12 11195696 11196206 -132590249 + L1MDb LINE L1 14 556 -5853 555 280 111 30 chr12 11196238 11196570 -132589885 + L1ME3A LINE L1 5804 6162 -8 310 285 62 36 chr12 11196563 11196756 -132589699 + L1ME3A LINE L1 5689 5886 -284 * 22 0 0 0 chr12 11197058 11197080 -132589375 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 11197614 11197637 -132588818 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 11199026 11199054 -132587401 + AT_rich Low_complexity Low_complexity 1 28 0 311 321 176 14 chr12 11199600 11199821 -132586634 + MIR SINE MIR 3 259 -3 1454 64 35 10 chr12 11200558 11200760 -132585695 + AluY SINE Alu 98 304 -7 21 0 0 0 chr12 11201183 11201204 -132585251 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 11201398 11201419 -132585036 + AT_rich Low_complexity Low_complexity 1 21 0 1276 161 13 25 chr12 11201658 11201894 -132584561 + AluJb SINE Alu 4 236 -76 280 138 25 50 chr12 11202220 11202300 -132584155 - MER3 DNA MER1_type -79 130 100 391 294 90 54 chr12 11202601 11202783 -132583672 + L1M4 LINE L1 3389 3563 -2583 2838 43 0 0 chr12 11202783 11203129 -132583326 - L1PA6 LINE L1 -1 6153 5808 391 294 90 54 chr12 11203129 11203389 -132583066 + L1M4 LINE L1 3563 3847 -2299 495 245 143 98 chr12 11203622 11203724 -132582731 + L1M4 LINE L1 4106 4202 -1944 1685 30 0 0 chr12 11203724 11203927 -132582528 + L1PA4 LINE L1 5953 6155 0 495 245 143 98 chr12 11203927 11204305 -132582150 + L1M4 LINE L1 4202 4608 -1538 958 266 14 11 chr12 11204329 11204607 -132581848 - L1MB7 LINE L1 -11 6173 5895 1470 158 46 52 chr12 11205106 11205390 -132581065 - MER44D DNA MER2_type -1882 605 267 1488 96 45 0 chr12 11205390 11205610 -132580845 - MER30 DNA MER1_type 0 230 1 1470 158 46 52 chr12 11205610 11205654 -132580801 - MER44D DNA MER2_type -2220 267 224 1431 257 110 14 chr12 11206395 11206886 -132579569 + L1MDb LINE L1 15 552 -5857 1393 85 66 0 chr12 11207112 11207324 -132579131 - MER30 DNA MER1_type 0 230 5 1725 258 57 28 chr12 11208103 11208631 -132577824 + L1MDb LINE L1 14 556 -5853 607 253 69 42 chr12 11208660 11208949 -132577506 + L1ME3A LINE L1 5799 6095 -75 354 301 41 41 chr12 11209015 11209211 -132577244 + L1ME3A LINE L1 5691 5886 -284 23 54 0 0 chr12 11210096 11210133 -132576322 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr12 11210602 11210639 -132575816 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr12 11211009 11211045 -132575410 + AT_rich Low_complexity Low_complexity 1 36 0 256 234 0 0 chr12 11211102 11211166 -132575289 + G-rich Low_complexity Low_complexity 1 64 0 7734 23 0 0 chr12 11211266 11213158 -132573297 + L1PA3 LINE L1 4260 6152 -3 324 106 0 0 chr12 11214205 11214252 -132572203 + Alu SINE Alu 1 47 -255 478 290 135 27 chr12 11214340 11214747 -132571708 - L1M4 LINE L1 -2911 4673 4223 242 145 26 66 chr12 11214789 11214865 -132571590 + MER3 DNA MER1_type 102 127 -82 4260 117 7 22 chr12 11215377 11216093 -132570362 - L1MA2 LINE L1 0 6304 5600 24 77 0 0 chr12 11216200 11216252 -132570203 + AT_rich Low_complexity Low_complexity 1 52 0 522 269 0 0 chr12 11216417 11216536 -132569919 + MLT1A1 LTR MaLR 245 363 -2 2108 194 39 73 chr12 11216933 11217496 -132568959 - MLT2B3 LTR ERVL -7 547 4 9038 140 18 23 chr12 11217651 11219112 -132567343 - L1P3 LINE L1 -4979 1482 29 913 213 25 24 chr12 11219134 11219492 -132566963 - L1PA12 LINE L1 -3756 3828 3472 1223 94 0 7 chr12 11219592 11220017 -132566438 + (G)n Simple_repeat Simple_repeat 1 422 0 225 207 0 52 chr12 11220019 11220077 -132566378 + G-rich Low_complexity Low_complexity 5 59 0 1232 209 10 70 chr12 11220084 11220467 -132565988 + L1P3 LINE L1 1087 1446 -5015 5829 226 31 11 chr12 11220471 11221670 -132564785 + L1P3 LINE L1 2783 4019 -2442 1996 110 43 3 chr12 11221670 11221952 -132564503 + AluSc SINE Alu 1 293 -16 5829 226 31 11 chr12 11221952 11222229 -132564226 + L1P3 LINE L1 4019 4289 -2172 743 265 67 36 chr12 11223921 11224144 -132562311 + MIR SINE MIR 18 247 -15 24 32 0 0 chr12 11224424 11224455 -132562000 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr12 11224800 11224828 -132561627 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 11226614 11226635 -132559820 + AT_rich Low_complexity Low_complexity 1 21 0 245 289 213 25 chr12 11226906 11227103 -132559352 + MIR SINE MIR 26 259 -3 22 0 0 0 chr12 11227382 11227404 -132559051 + AT_rich Low_complexity Low_complexity 1 22 0 5453 124 10 16 chr12 11228692 11229787 -132556668 + L1PA14 LINE L1 5072 6160 -1 1944 243 2 11 chr12 11229792 11230326 -132556129 + L1 LINE L1 4253 4781 -1365 278 353 0 0 chr12 11230499 11230649 -132555806 + C-rich Low_complexity Low_complexity 1 150 0 11057 117 12 13 chr12 11230993 11233541 -132552914 - L1PA7 LINE L1 -3 6151 3614 494 267 46 62 chr12 11233541 11233848 -132552607 + THE1B LTR MaLR 1 302 -62 2488 260 22 18 chr12 11233962 11234816 -132551639 - L1PA12 LINE L1 -4331 3253 2381 655 323 46 87 chr12 11234812 11236023 -132550432 - L1PA12 LINE L1 -5502 2079 182 * 296 257 38 9 chr12 11236030 11236135 -132550320 + L1M4c LINE L1 1459 1566 -4818 2033 117 3 7 chr12 11236549 11236832 -132549623 - AluSg SINE Alu -18 292 11 26 0 0 0 chr12 11237775 11237801 -132548654 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr12 11238731 11238757 -132547698 + AT_rich Low_complexity Low_complexity 1 26 0 3071 245 79 29 chr12 11240543 11240954 -132545501 - L1M4 LINE L1 -1268 4878 4489 2055 126 0 20 chr12 11240954 11241256 -132545199 - AluSx SINE Alu -16 296 1 3071 245 79 29 chr12 11241256 11241965 -132544490 - L1M4 LINE L1 -1657 4489 3701 2428 67 3 7 chr12 11241967 11242267 -132544188 - AluSp SINE Alu -14 299 1 11829 77 5 1 chr12 11242917 11244547 -132541908 - L1P LINE L1 -1691 4455 2819 1085 198 8 60 chr12 11244684 11244936 -132541519 + AluJb SINE Alu 62 300 -12 1998 97 0 11 chr12 11245060 11245328 -132541127 - AluSg SINE Alu -45 265 1 21 71 0 0 chr12 11245445 11245487 -132540968 + AT_rich Low_complexity Low_complexity 1 42 0 2171 189 30 6 chr12 11245748 11246219 -132540236 - Tigger3(Golem) DNA MER2_type -10 3019 2538 192 200 0 0 chr12 11246413 11246458 -132539997 + (TA)n Simple_repeat Simple_repeat 1 45 0 336 324 86 5 chr12 11246593 11246803 -132539652 - MLT1L LTR MaLR -222 393 167 23 0 0 0 chr12 11247045 11247068 -132539387 + AT_rich Low_complexity Low_complexity 1 23 0 844 213 0 0 chr12 11247068 11247223 -132539232 - FRAM SINE Alu -23 153 1 316 340 111 19 chr12 11247378 11247540 -132538915 - MIR3 SINE MIR -12 196 20 205 200 0 0 chr12 11247881 11247921 -132538534 + (TA)n Simple_repeat Simple_repeat 2 41 0 233 177 25 114 chr12 11247936 11248015 -132538440 + MIR SINE MIR 73 144 -64 21 36 0 0 chr12 11248588 11248616 -132537839 + AT_rich Low_complexity Low_complexity 1 28 0 2537 207 6 6 chr12 11249390 11249877 -132536578 + L1PA16 LINE L1 5447 5933 -233 1613 218 25 64 chr12 11250136 11250571 -132535884 - LTR9 LTR ERV1 -194 418 1 3423 188 13 13 chr12 11250578 11251435 -132535020 + L1PA16 LINE L1 4924 5783 -383 2107 139 0 0 chr12 11251435 11251730 -132534725 + AluSx SINE Alu 1 295 -17 3423 188 13 13 chr12 11251730 11251855 -132534600 + L1PA16 LINE L1 5783 5906 -260 240 35 0 0 chr12 11252604 11252633 -132533822 + (T)n Simple_repeat Simple_repeat 1 29 0 1670 126 61 4 chr12 11253271 11253532 -132532923 + AluSx SINE Alu 1 276 -36 191 36 36 0 chr12 11253533 11253561 -132532894 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2974 247 38 16 chr12 11254677 11255754 -132530701 + L1 LINE L1 4019 5119 -1027 4043 164 56 3 chr12 11255757 11256620 -132529835 + L1P4 LINE L1 1 908 -5553 23 0 0 0 chr12 11256667 11256690 -132529765 + GC_rich Low_complexity Low_complexity 1 23 0 752 151 67 17 chr12 11257154 11257333 -132529122 + L1 LINE L1 5062 5249 -897 1707 240 10 31 chr12 11257338 11257946 -132528509 + L1P4 LINE L1 3338 3932 -2529 2202 131 34 20 chr12 11257948 11258306 -132528149 - THE1B LTR MaLR -1 363 1 6357 102 9 2 chr12 11258306 11259227 -132527228 - THE1B-int LTR MaLR 0 1580 654 8643 49 27 5 chr12 11259526 11260471 -132525984 + L1P LINE L1 2132 3054 -3092 2215 105 10 0 chr12 11260471 11260767 -132525688 + AluY SINE Alu 2 300 -11 8643 49 27 5 chr12 11260767 11260964 -132525491 + L1P LINE L1 3054 3307 -2839 222 37 0 0 chr12 11260964 11260991 -132525464 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8643 49 27 5 chr12 11260991 11261092 -132525363 + L1P LINE L1 3307 3404 -2742 2064 126 3 16 chr12 11261597 11261907 -132524548 - AluSx SINE Alu -6 306 1 652 263 190 7 chr12 11261927 11262216 -132524239 - MLT1F1 LTR MaLR -3 564 223 232 191 21 0 chr12 11262249 11262296 -132524159 + GA-rich Low_complexity Low_complexity 1 48 0 840 148 0 16 chr12 11263471 11263599 -132522856 - AluJb SINE Alu -185 127 2 30 83 0 0 chr12 11263691 11263763 -132522692 + AT_rich Low_complexity Low_complexity 1 72 0 3845 202 31 21 chr12 11264294 11265404 -132521051 - L1 LINE L1 -2301 3845 2725 334 262 55 86 chr12 11265447 11265489 -132520966 + L1MEc LINE L1 1020 1062 -5334 2132 108 24 0 chr12 11265489 11265777 -132520678 + AluSp SINE Alu 5 299 -14 334 262 55 86 chr12 11265777 11266024 -132520431 + L1MEc LINE L1 1062 1300 -5096 370 237 50 14 chr12 11266069 11266208 -132520247 + L1MEc LINE L1 1965 2108 -4288 3462 196 25 89 chr12 11266638 11268080 -132518375 + L1P4 LINE L1 4620 5973 -508 447 339 0 0 chr12 11268403 11268583 -132517872 + G-rich Low_complexity Low_complexity 1 180 0 189 175 0 0 chr12 11268813 11268853 -132517602 + (TA)n Simple_repeat Simple_repeat 1 40 0 223 154 0 0 chr12 11269051 11269090 -132517365 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 253 288 56 56 chr12 11269106 11269231 -132517224 - L2 LINE L2 -268 3004 2880 221 395 151 6 chr12 11269281 11269453 -132517002 + MIR3 SINE MIR 8 204 -4 180 111 0 0 chr12 11270457 11270484 -132515971 + (TTG)n Simple_repeat Simple_repeat 2 28 0 453 308 49 62 chr12 11270505 11270879 -132515576 + L2 LINE L2 2129 2499 -815 1876 162 7 0 chr12 11270879 11271176 -132515279 - AluJb SINE Alu -13 299 1 453 308 49 62 chr12 11271176 11271207 -132515248 + L2 LINE L2 2499 2529 -785 1626 221 8 2 chr12 11271580 11271978 -132514477 + L1MA10 LINE L1 5574 5973 -318 * 2601 231 8 6 chr12 11271976 11272683 -132513772 - L1 LINE L1 -1557 4589 3881 318 188 0 0 chr12 11272809 11272873 -132513582 - MER4B LTR ERV1 -546 64 1 393 299 118 33 chr12 11273048 11273259 -132513196 - L3 LINE CR1 -7 1570 1342 1344 42 63 42 chr12 11274091 11274281 -132512174 + AluY SINE Alu 2 195 -116 633 293 48 0 chr12 11274455 11274663 -132511792 + L1MCc LINE L1 974 1191 -5232 347 275 52 40 chr12 11274710 11275168 -132511287 + L1MCc LINE L1 1297 1751 -4887 330 230 62 26 chr12 11275256 11275369 -132511086 + L1MCc LINE L1 3175 3291 -3650 543 132 26 0 chr12 11275374 11275473 -132510982 - MER51A LTR ERV1 0 634 516 1356 177 13 31 chr12 11275690 11276007 -132510448 + L1MA10 LINE L1 6016 6326 -8 1153 28 7 0 chr12 11278945 11279089 -132507366 + L1P LINE L1 4071 4215 -1931 54 0 0 0 chr12 11279589 11279643 -132506812 + AT_rich Low_complexity Low_complexity 1 54 0 352 287 13 20 chr12 11279716 11279866 -132506589 + (TA)n Simple_repeat Simple_repeat 2 150 0 2375 165 78 0 chr12 11280297 11280800 -132505655 - L1 LINE L1 -922 5224 4683 245 258 0 0 chr12 11280813 11280879 -132505576 + L1M3 LINE L1 5370 5435 -748 * 590 213 55 51 chr12 11280876 11280952 -132505503 + L1M2 LINE L1 2719 2793 -4055 990 62 0 42 chr12 11280952 11281096 -132505359 + L1PA10 LINE L1 6022 6159 -9 590 213 55 51 chr12 11281096 11281337 -132505118 + L1M2 LINE L1 2793 3031 -3817 293 226 8 60 chr12 11281447 11281639 -132504816 + C-rich Low_complexity Low_complexity 1 182 0 1732 87 12 4 chr12 11281912 11282166 -132504289 + LTR12 LTR ERV1 459 714 0 1663 214 41 11 chr12 11282211 11282843 -132503612 + L1M2 LINE L1 3149 3843 -3005 1276 131 100 3 chr12 11282836 11283187 -132503268 + L1PA8 LINE L1 5766 6150 -22 * 263 308 17 41 chr12 11283452 11283624 -132502831 + GA-rich Low_complexity Low_complexity 2 169 0 * 366 369 0 0 chr12 11283594 11283770 -132502685 + G-rich Low_complexity Low_complexity 1 176 0 269 232 0 0 chr12 11283971 11284040 -132502415 - LTR30 LTR ERV1 -98 624 556 1798 190 124 70 chr12 11284045 11284691 -132501764 - pTR5 LTR ERV1 -406 2032 1352 1222 190 77 0 chr12 11284707 11284981 -132501474 + MER2 DNA MER2_type 51 345 0 296 164 0 0 chr12 11284991 11285046 -132501409 - L1 LINE L1 -3705 2441 2387 1199 257 97 9 chr12 11285162 11285711 -132500744 + L1M2 LINE L1 3875 4471 -2377 430 291 103 22 chr12 11286750 11286973 -132499482 - L1M4 LINE L1 -2517 3629 3389 236 150 38 62 chr12 11287274 11287354 -132499101 + MER3 DNA MER1_type 100 130 -79 259 310 10 10 chr12 11287509 11287609 -132498846 + CT-rich Low_complexity Low_complexity 4 103 0 22 70 0 0 chr12 11288510 11288553 -132497902 + AT_rich Low_complexity Low_complexity 1 43 0 557 287 99 14 chr12 11289291 11289514 -132496941 - L1ME LINE L1 -405 5765 5524 2109 118 0 0 chr12 11289521 11289801 -132496654 + AluSx SINE Alu 1 280 -32 2743 51 0 0 chr12 11290617 11290951 -132495504 - L1PA7 LINE L1 -13 6141 5808 388 304 101 57 chr12 11290959 11291344 -132495111 + L1M4 LINE L1 3580 3981 -2165 3875 125 15 11 chr12 11292206 11292821 -132493634 + LTR5 LTR ERVK 1 617 -352 910 180 40 35 chr12 11292941 11293169 -132493286 + THE1C LTR MaLR 147 375 0 2047 228 116 15 chr12 11293179 11294057 -132492398 + L1M2 LINE L1 2724 3692 -3156 772 271 71 12 chr12 11294272 11294681 -132491774 - L1M4 LINE L1 -3169 2977 2545 * 1740 170 42 0 chr12 11294655 11295008 -132491447 + L1MA4A LINE L1 5914 6281 -22 314 329 65 29 chr12 11295030 11295200 -132491255 - L1M4 LINE L1 -3586 2560 2385 7009 30 22 1 chr12 11295312 11296160 -132490295 + L1PA4 LINE L1 5286 6151 -4 400 299 73 17 chr12 11296390 11296567 -132489888 - MER110 LTR ERV1 -93 398 212 1611 144 3 87 chr12 11296595 11296907 -132489548 - AluJo SINE Alu -26 286 1 180 0 0 0 chr12 11298260 11298280 -132488175 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 3940 72 18 23 chr12 11298596 11298967 -132487488 - L1PA6 LINE L1 -4 6150 5782 2686 23 0 0 chr12 11298967 11299275 -132487180 - AluYa5 SINE Alu -3 308 1 3940 72 18 23 chr12 11299275 11299472 -132486983 - L1PA6 LINE L1 -372 5782 5585 24 32 0 0 chr12 11299598 11299629 -132486826 + AT_rich Low_complexity Low_complexity 1 31 0 548 191 64 127 chr12 11299794 11300014 -132486441 + MER96B DNA MER1_type? 211 416 -1 4944 156 48 12 chr12 11300135 11300610 -132485845 - L1MA9 LINE L1 0 6312 5855 384 22 0 0 chr12 11300610 11300655 -132485800 + (TG)n Simple_repeat Simple_repeat 2 46 0 4944 156 48 12 chr12 11300655 11301387 -132485068 - L1MA9 LINE L1 -457 5855 5036 2292 125 0 0 chr12 11301387 11301692 -132484763 - AluSg SINE Alu -5 305 1 4944 156 48 12 chr12 11301692 11301999 -132484456 - L1MA9 LINE L1 -1276 5036 4741 321 244 44 59 chr12 11302012 11302147 -132484308 + MIR SINE MIR 112 244 -18 237 123 386 0 chr12 11302708 11302765 -132483690 - MADE1 DNA Mariner 0 80 2 676 311 55 26 chr12 11302921 11303301 -132483154 - L1MC4a LINE L1 -1928 5880 5490 1284 273 80 42 chr12 11303364 11303962 -132482493 - L1ME3A LINE L1 -11 6159 5539 2056 129 10 3 chr12 11304236 11304531 -132481924 + AluSq SINE Alu 1 297 -16 230 278 22 78 chr12 11305215 11305305 -132481150 - MIR3 SINE MIR -39 169 85 29 0 0 0 chr12 11306868 11306897 -132479558 + AT_rich Low_complexity Low_complexity 1 29 0 265 337 54 0 chr12 11307360 11307452 -132479003 + L2 LINE L2 3212 3308 -5 296 132 0 20 chr12 11308685 11308745 -132477710 + L1MC2 LINE L1 5180 5237 -909 4877 165 43 8 chr12 11308852 11309787 -132476668 + L1MC2 LINE L1 5364 6331 -13 2545 188 118 37 chr12 11309804 11310457 -132475998 + L1MD1 LINE L1 5441 6146 -96 659 240 228 4 chr12 11310457 11310639 -132475816 + MSTD LTR MaLR 1 141 -255 321 47 0 0 chr12 11310639 11310682 -132475773 + (TC)n Simple_repeat Simple_repeat 1 43 0 659 240 228 4 chr12 11310682 11310745 -132475710 + MSTD LTR MaLR 141 301 -95 * 668 204 39 97 chr12 11310735 11311014 -132475441 - MLT1C LTR MaLR -196 271 9 311 177 161 0 chr12 11311022 11311084 -132475371 + MER5A DNA MER1_type 93 164 -25 939 43 0 51 chr12 11311092 11311230 -132475225 + L1MA6 LINE L1 6170 6300 0 289 172 172 0 chr12 11311391 11311449 -132475006 + MER5A DNA MER1_type 99 166 -23 979 63 0 42 chr12 11311451 11311594 -132474861 + L1PA10 LINE L1 6023 6159 -9 1131 189 32 73 chr12 11311594 11311946 -132474509 + L1M1 LINE L1 3523 3860 -3705 1328 193 73 0 chr12 11311956 11312231 -132474224 - MER2 DNA MER2_type 0 345 51 229 250 0 0 chr12 11312239 11312291 -132474164 + LTR30 LTR ERV1 1 52 -670 3400 103 138 107 chr12 11312291 11313373 -132473082 + LTR12 LTR ERV1 57 714 0 2367 211 106 11 chr12 11313418 11314049 -132472406 + L1M1 LINE L1 3866 4556 -3009 * 2992 70 3 0 chr12 11314046 11314431 -132472024 + L1PA8 LINE L1 5766 6151 -21 514 209 99 0 chr12 11314441 11314623 -132471832 + L1M1 LINE L1 4536 4735 -2830 2196 170 3 0 chr12 11314797 11315161 -132471294 + MLT1A1 LTR MaLR 1 365 0 334 323 15 8 chr12 11315214 11315347 -132471108 - L2 LINE L2 0 3313 3180 1206 251 28 8 chr12 11315348 11315747 -132470708 + L1ME1 LINE L1 2464 2870 -3276 244 50 0 0 chr12 11315748 11315788 -132470667 - Alu SINE Alu 0 302 263 948 112 7 7 chr12 11315789 11315932 -132470523 - AluSq/x SINE Alu -169 143 1 316 235 12 0 chr12 11315970 11316051 -132470404 + L1ME1 LINE L1 2956 3037 -3109 5531 238 66 40 chr12 11316102 11316240 -132470215 + L1ME1 LINE L1 3211 3344 -2830 1792 196 48 24 chr12 11316240 11316694 -132469761 + MLT1C LTR MaLR 1 465 -2 5531 238 66 40 chr12 11316694 11317046 -132469409 + L1ME1 LINE L1 3344 3685 -2489 2393 67 3 7 chr12 11317046 11317346 -132469109 + AluSp SINE Alu 1 299 -14 5531 238 66 40 chr12 11317346 11318058 -132468397 + L1ME1 LINE L1 3685 4377 -1797 2096 120 0 17 chr12 11318058 11318359 -132468096 + AluSx SINE Alu 1 296 -16 5531 238 66 40 chr12 11318359 11319054 -132467401 + L1ME1 LINE L1 4377 5174 -1000 635 95 0 0 chr12 11319054 11319149 -132467306 - L1PB1 LINE L1 -8 6143 6049 5531 238 66 40 chr12 11319149 11319575 -132466880 + L1ME1 LINE L1 5174 5588 -586 662 191 0 0 chr12 11319597 11319712 -132466743 + FLAM_C SINE Alu 1 115 -28 189 0 0 0 chr12 11319712 11319733 -132466722 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 1861 206 83 46 chr12 11319735 11320280 -132466175 + L1ME1 LINE L1 5597 6161 -5 1431 216 137 12 chr12 11320290 11320707 -132465748 + L1MC4 LINE L1 7561 8029 -13 1761 146 7 34 chr12 11321634 11321929 -132464526 + AluJb SINE Alu 1 287 -25 285 29 0 0 chr12 11323558 11323592 -132462863 + (TG)n Simple_repeat Simple_repeat 2 35 0 270 292 10 0 chr12 11324465 11324561 -132461894 + L1ME4a LINE L1 5802 5898 -223 22 80 0 0 chr12 11324974 11325024 -132461431 + AT_rich Low_complexity Low_complexity 1 50 0 233 219 172 0 chr12 11325249 11325313 -132461142 - MIR SINE MIR -109 153 79 3377 131 73 13 chr12 11325910 11326530 -132459925 + L1MA10 LINE L1 5676 6332 -2 279 297 70 16 chr12 11330523 11330651 -132455804 + MER5A DNA MER1_type 49 183 -6 27 29 0 0 chr12 11331970 11332004 -132454451 + AT_rich Low_complexity Low_complexity 1 34 0 335 317 28 14 chr12 11332159 11332304 -132454151 - L1ME LINE L1 -462 5659 5513 303 234 31 0 chr12 11333045 11333109 -132453346 - MIR SINE MIR -108 154 89 534 298 57 40 chr12 11333220 11333448 -132453007 + MIR SINE MIR 21 252 -10 202 306 181 0 chr12 11333935 11334007 -132452448 + L2 LINE L2 3171 3255 -58 1978 62 19 11 chr12 11334834 11335094 -132451361 + AluY SINE Alu 43 304 -7 22 0 0 0 chr12 11335541 11335563 -132450892 + AT_rich Low_complexity Low_complexity 1 22 0 200 245 41 0 chr12 11335833 11335882 -132450573 - L2 LINE L2 -8 3264 3214 238 163 61 0 chr12 11336634 11336645 -132449810 + MER3 DNA MER1_type 37 50 -159 314 129 129 0 chr12 11336645 11336707 -132449748 - MER3 DNA MER1_type 0 209 140 472 214 45 9 chr12 11336919 11337031 -132449424 - MER3 DNA MER1_type -89 120 5 745 250 91 19 chr12 11338553 11338817 -132447638 - L1ME LINE L1 -343 5778 5496 376 160 217 57 chr12 11338923 11339029 -132447426 - L2 LINE L2 -12 3301 3179 263 347 119 27 chr12 11340110 11340329 -132446126 - MIR SINE MIR -2 260 22 739 114 0 0 chr12 11342035 11342140 -132444315 + AluSg/x SINE Alu 182 286 -26 216 0 0 0 chr12 11342335 11342359 -132444096 + (A)n Simple_repeat Simple_repeat 1 24 0 309 370 74 0 chr12 11342734 11342896 -132443559 - MIR SINE MIR -7 255 82 2283 94 0 3 chr12 11343224 11343533 -132442922 + AluSx SINE Alu 3 310 -2 1246 193 36 0 chr12 11343825 11343948 -132442507 + AluJb SINE Alu 1 118 -187 531 0 0 0 chr12 11343948 11344007 -132442448 + (CATAA)n Simple_repeat Simple_repeat 2 60 0 1246 193 36 0 chr12 11344007 11344178 -132442277 + AluJb SINE Alu 118 305 0 199 322 149 0 chr12 11344566 11344687 -132441768 + L2 LINE L2 2920 3058 -214 324 259 105 37 chr12 11346206 11346368 -132440087 + MIR SINE MIR 34 206 -56 1737 79 0 9 chr12 11346531 11346760 -132439695 + AluSq SINE Alu 85 311 -2 1984 108 58 0 chr12 11346779 11347057 -132439398 + AluSq SINE Alu 1 294 -19 305 358 103 0 chr12 11347139 11347304 -132439151 - L2 LINE L2 -222 3050 2869 490 219 57 0 chr12 11347465 11347570 -132438885 + MER81 DNA DNA 1 111 -3 585 202 40 0 chr12 11348056 11348180 -132438275 + MER3 DNA MER1_type 81 209 0 281 207 35 0 chr12 11348137 11348195 -132438260 - MER3 DNA MER1_type -119 90 31 * 256 307 171 11 chr12 11349755 11349931 -132436524 + L2 LINE L2 2848 3051 -221 376 198 153 9 chr12 11350708 11350819 -132435636 - MIR SINE MIR -11 251 125 29 0 0 0 chr12 11350939 11350968 -132435487 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr12 11351106 11351128 -132435327 + (CA)n Simple_repeat Simple_repeat 1 22 0 258 160 0 0 chr12 11353395 11353445 -132433010 + (TG)n Simple_repeat Simple_repeat 2 51 0 1926 159 3 13 chr12 11355896 11356211 -132430244 + AluJb SINE Alu 1 312 0 306 67 0 0 chr12 11356951 11356996 -132429459 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 2322 62 0 0 chr12 11357000 11357274 -132429181 - AluY SINE Alu -37 274 1 255 352 106 0 chr12 11357516 11357658 -132428797 + MER5B DNA MER1_type 7 163 -15 2361 53 0 3 chr12 11358482 11358792 -132427663 + AluY SINE Alu 1 309 0 299 308 131 58 chr12 11359836 11360232 -132426223 - L2 LINE L2 -17 3296 2872 444 278 138 8 chr12 11360725 11360916 -132425539 - MIR SINE MIR -1 261 38 877 223 5 5 chr12 11360916 11361113 -132425342 - MER3 DNA MER1_type -1 208 12 540 0 0 0 chr12 11361790 11361850 -132424605 + (GA)n Simple_repeat Simple_repeat 1 60 0 2203 123 3 3 chr12 11361861 11362169 -132424286 + AluSx SINE Alu 1 308 -4 1098 173 36 0 chr12 11362327 11362547 -132423908 + L1 LINE L1 3812 4039 -2107 1505 260 240 66 chr12 11363655 11363828 -132422627 - L2 LINE L2 0 3313 3171 583 176 0 101 chr12 11363828 11363976 -132422479 + FLAM_A SINE Alu 1 133 0 1505 260 240 66 chr12 11363976 11365123 -132421332 - L2 LINE L2 -142 3171 1759 233 270 191 0 chr12 11365204 11365319 -132421136 - L3b LINE CR1 -205 1378 1242 675 236 6 32 chr12 11366886 11367043 -132419412 - FRAM SINE Alu -24 152 1 2481 62 0 13 chr12 11369094 11369398 -132417057 - AluY SINE Alu -11 300 1 206 95 24 0 chr12 11370889 11370931 -132415524 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 247 317 24 0 chr12 11371047 11371129 -132415326 - L2 LINE L2 -8 3264 3181 2154 106 3 7 chr12 11371175 11371467 -132414988 - AluSx SINE Alu -17 295 5 388 314 95 14 chr12 11374038 11374248 -132412207 + MIR SINE MIR 29 255 -7 25 31 0 0 chr12 11375317 11375349 -132411106 + AT_rich Low_complexity Low_complexity 1 32 0 390 351 96 16 chr12 11375401 11375734 -132410721 - L2 LINE L2 -214 3058 2695 1633 225 67 43 chr12 11375744 11376282 -132410173 + L1MD2 LINE L1 5795 6345 -14 663 277 100 73 chr12 11376501 11377132 -132409323 - L2 LINE L2 -939 2375 1728 371 248 5 151 chr12 11377417 11377500 -132408955 - MER5B DNA MER1_type -1 177 84 2249 118 48 25 chr12 11377500 11377856 -132408599 + THE1B LTR MaLR 1 364 0 11581 102 6 0 chr12 11377856 11379426 -132407029 + THE1B-int LTR MaLR 1 1580 0 2190 107 62 37 chr12 11379426 11379781 -132406674 + THE1B LTR MaLR 1 364 0 371 248 5 151 chr12 11379781 11379901 -132406554 - MER5B DNA MER1_type -91 87 2 234 0 0 0 chr12 11380368 11380394 -132406061 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 513 179 0 0 chr12 11380399 11380483 -132405972 - AluJ SINE Alu -24 288 205 804 201 0 7 chr12 11380484 11380623 -132405832 - AluJ SINE Alu -173 139 2 21 36 0 0 chr12 11380865 11380893 -132405562 + AT_rich Low_complexity Low_complexity 1 28 0 449 194 16 91 chr12 11380893 11381079 -132405376 + L1MC5 LINE L1 7760 7931 -30 2367 57 6 31 chr12 11381588 11381906 -132404549 + AluY SINE Alu 1 310 -1 220 337 0 12 chr12 11382074 11382160 -132404295 + MIR SINE MIR 103 187 -75 2388 76 0 13 chr12 11382476 11382780 -132403675 + AluSx SINE Alu 1 300 -12 629 247 37 43 chr12 11383111 11383329 -132403126 + MIR SINE MIR 49 262 0 690 226 0 41 chr12 11383754 11383900 -132402555 + MER5B DNA MER1_type 35 174 -4 200 279 0 16 chr12 11384004 11384065 -132402390 + CT-rich Low_complexity Low_complexity 1 60 0 301 280 11 19 chr12 11384070 11384205 -132402250 + MIR SINE MIR 82 212 -50 275 280 53 0 chr12 11384751 11384826 -132401629 + MIR SINE MIR 36 114 -94 2044 78 85 14 chr12 11384826 11385109 -132401346 - AluY SINE Alu -8 303 1 3888 136 21 2 chr12 11385594 11386217 -132400238 + MER41B LTR ERV1 1 635 0 3147 124 18 12 chr12 11386217 11386788 -132399667 + MER41B-int LTR ERV1 1 633 -5313 * 29469 102 38 19 chr12 11386780 11387732 -132398723 + MER41B-int LTR ERV1 1083 2016 -3930 2141 133 22 35 chr12 11387732 11388101 -132398354 + THE1B LTR MaLR 1 364 0 2474 87 3 0 chr12 11388102 11388412 -132398043 + AluY SINE Alu 1 311 0 29469 102 38 19 chr12 11388412 11392232 -132394223 + MER41B-int LTR ERV1 2015 5946 0 3718 141 41 3 chr12 11392232 11392844 -132393611 + MER41B LTR ERV1 1 635 0 678 237 217 10 chr12 11393333 11393531 -132392924 - MIR SINE MIR -1 261 23 4298 183 40 9 chr12 11393614 11394842 -132391613 - L1MB7 LINE L1 -19 6165 4888 880 186 7 0 chr12 11394890 11395035 -132391420 - FRAM SINE Alu -30 146 1 1221 176 14 92 chr12 11395035 11395091 -132391364 - L1MB7 LINE L1 -1373 4773 4714 2349 54 44 0 chr12 11395091 11395386 -132391069 + AluY SINE Alu 4 311 0 1221 176 14 92 chr12 11395386 11395686 -132390769 - L1MB7 LINE L1 -1432 4714 4445 2066 141 24 29 chr12 11398314 11398691 -132387764 + THE1C LTR MaLR 1 375 0 1628 173 0 49 chr12 11399101 11399407 -132387048 + AluJb SINE Alu 12 302 -10 180 0 0 0 chr12 11400098 11400118 -132386337 + (CTG)n Simple_repeat Simple_repeat 1 20 0 2139 105 0 63 chr12 11400118 11400452 -132386003 - AluSq SINE Alu 0 313 1 405 237 149 18 chr12 11400789 11400903 -132385552 + L2 LINE L2 3185 3313 0 3796 152 39 95 chr12 11401217 11402631 -132383824 + L1MA9 LINE L1 4969 6299 -13 1590 204 72 58 chr12 11402687 11402753 -132383702 + MLT1D LTR MaLR 5 69 -436 2410 53 17 3 chr12 11402753 11403052 -132383403 - AluY SINE Alu -8 303 1 1590 204 72 58 chr12 11403052 11403471 -132382984 + MLT1D LTR MaLR 69 497 -8 1229 215 52 12 chr12 11403661 11403984 -132382471 + MLT1B LTR MaLR 7 342 -48 753 170 29 0 chr12 11403984 11404149 -132382306 + MER1B DNA MER1_type 1 148 -149 724 151 8 8 chr12 11404165 11404291 -132382164 - AluSq/x SINE Alu -183 130 5 1154 110 0 37 chr12 11404295 11404486 -132381969 + MER1B DNA MER1_type 136 319 -20 335 135 0 0 chr12 11404495 11404547 -132381908 + MLT1B LTR MaLR 416 467 0 1452 77 0 25 chr12 11404938 11405134 -132381321 + AluSg/x SINE Alu 92 282 -30 276 267 53 0 chr12 11405232 11405307 -132381148 - MIR SINE MIR -67 195 117 2282 101 13 0 chr12 11406230 11406538 -132379917 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 11406628 11406649 -132379806 + GC_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr12 11406649 11406679 -132379776 + (CA)n Simple_repeat Simple_repeat 1 30 0 395 149 23 11 chr12 11407031 11407118 -132379337 + L1MB3 LINE L1 6087 6174 -9 1127 206 56 103 chr12 11408848 11409313 -132377142 - MLT1D LTR MaLR 0 505 63 1970 120 39 34 chr12 11409315 11409863 -132376592 - MER51A LTR ERV1 0 634 1 429 108 15 0 chr12 11409863 11409926 -132376529 - MLT1D LTR MaLR -441 64 1 297 0 0 0 chr12 11410015 11410048 -132376407 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 464 263 44 0 chr12 11410294 11410408 -132376047 + MIR3 SINE MIR 83 201 -7 285 311 98 16 chr12 11410475 11410597 -132375858 - L3 LINE CR1 -85 1492 1361 229 308 98 14 chr12 11410590 11410733 -132375722 + MIR SINE MIR 102 256 -6 * 273 327 75 69 chr12 11410804 11411122 -132375333 - L3 LINE CR1 -749 828 509 307 329 121 54 chr12 11411632 11411912 -132374543 + L2 LINE L2 2932 3230 -42 917 288 113 39 chr12 11412450 11412884 -132373571 + L2 LINE L2 2848 3313 0 191 36 36 0 chr12 11413175 11413203 -132373252 + (TA)n Simple_repeat Simple_repeat 1 29 0 343 118 16 91 chr12 11413225 11413411 -132373044 + (TA)n Simple_repeat Simple_repeat 1 172 0 * 347 159 62 45 chr12 11413292 11413468 -132372987 + (TATAG)n Simple_repeat Simple_repeat 2 180 0 412 278 208 32 chr12 11413831 11414202 -132372253 + MLT1J2 LTR MaLR 1 436 -14 390 253 0 10 chr12 11414415 11414514 -132371941 + Charlie7 DNA MER1_type 124 221 -2391 486 264 179 8 chr12 11414613 11414966 -132371489 + Charlie7 DNA MER1_type 1436 1848 -764 1275 72 0 0 chr12 11414966 11415175 -132371280 - AluSc SINE Alu 0 336 128 434 232 118 16 chr12 11415236 11415482 -132370973 + Charlie7 DNA MER1_type 1853 2123 -489 201 175 0 0 chr12 11415487 11415527 -132370928 + (TA)n Simple_repeat Simple_repeat 1 40 0 225 224 0 0 chr12 11415584 11415642 -132370813 - L1MC4 LINE L1 -1345 6697 6640 317 297 11 0 chr12 11415701 11415792 -132370663 - L1MC4 LINE L1 -1339 6703 6612 428 229 28 14 chr12 11415832 11415976 -132370479 + Charlie7 DNA MER1_type 2204 2349 -263 23 0 0 0 chr12 11416125 11416148 -132370307 + AT_rich Low_complexity Low_complexity 1 23 0 1753 173 104 33 chr12 11416213 11416636 -132369819 - MLT2B1 LTR ERVL -67 453 1 3601 153 36 12 chr12 11416636 11416865 -132369590 - ERVL-B1 LTR ERVL -7 5757 5535 2009 171 6 0 chr12 11416865 11417204 -132369251 - MER2 DNA MER2_type -3 341 1 3601 153 36 12 chr12 11417204 11417665 -132368790 - ERVL-B1 LTR ERVL -229 5535 5050 * 7344 149 66 2 chr12 11417663 11418966 -132367489 - ERVL-B1 LTR ERVL -1699 4065 2680 1245 150 98 33 chr12 11418971 11419244 -132367211 + THE1C LTR MaLR 1 291 -84 2474 106 45 46 chr12 11419244 11419699 -132366756 + THE1C LTR MaLR 1 428 0 966 163 17 6 chr12 11419701 11419879 -132366576 + THE1C-int LTR MaLR 3 182 -1398 413 135 40 0 chr12 11419879 11419953 -132366502 + THE1C LTR MaLR 352 428 0 13345 191 31 7 chr12 11419955 11422568 -132363887 - ERVL-B1 LTR ERVL -3087 2677 2 364 91 0 0 chr12 11422571 11422626 -132363829 - ERVL-B1 LTR ERVL -2 518 464 283 149 0 53 chr12 11422626 11422720 -132363735 + (TA)n Simple_repeat Simple_repeat 1 89 0 1711 168 129 30 chr12 11422725 11423160 -132363295 - MLT2B1 LTR ERVL -40 480 3 184 301 58 39 chr12 11423877 11423980 -132362475 + L2 LINE L2 2202 2306 -1008 6825 217 93 33 chr12 11424424 11425858 -132360597 + L1ME LINE L1 2661 4009 -2233 2428 71 0 3 chr12 11425858 11426169 -132360286 + AluY SINE Alu 1 310 -1 6825 217 93 33 chr12 11426169 11427109 -132359346 + L1ME LINE L1 4009 4892 -1350 2017 136 10 3 chr12 11427109 11427411 -132359044 + AluSc SINE Alu 1 304 -5 6825 217 93 33 chr12 11427411 11427763 -132358692 + L1ME LINE L1 4892 5222 -1020 1794 156 38 41 chr12 11427763 11428154 -132358301 - MLT1B LTR MaLR 0 390 1 6825 217 93 33 chr12 11428154 11428189 -132358266 + L1ME LINE L1 5222 5596 -646 360 0 0 0 chr12 11428194 11428234 -132358221 + (CA)n Simple_repeat Simple_repeat 2 41 0 229 275 62 0 chr12 11429407 11429487 -132356968 + L1ME LINE L1 5740 5824 -297 348 77 0 0 chr12 11429779 11429831 -132356624 + (CA)n Simple_repeat Simple_repeat 1 52 0 464 250 194 52 chr12 11430047 11430335 -132356120 + L2 LINE L2 2947 3275 -38 23 0 0 0 chr12 11430965 11430988 -132355467 + AT_rich Low_complexity Low_complexity 1 23 0 381 279 111 41 chr12 11432333 11432577 -132353878 - MIR SINE MIR 0 262 2 204 93 37 19 chr12 11433287 11433341 -132353114 + A-rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr12 11433957 11433983 -132352472 + AT_rich Low_complexity Low_complexity 1 26 0 2142 111 17 7 chr12 11433996 11434293 -132352162 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr12 11434608 11434631 -132351824 + AT_rich Low_complexity Low_complexity 1 23 0 232 235 0 0 chr12 11434696 11434747 -132351708 - MER116 DNA Mariner -3 77 27 302 125 0 0 chr12 11435307 11435355 -132351100 - Alu SINE Alu -12 290 243 195 364 57 0 chr12 11435355 11435443 -132351012 - MIR SINE MIR -168 94 2 470 278 100 48 chr12 11436361 11436591 -132349864 + L2 LINE L2 1323 1564 -1750 1380 254 106 11 chr12 11436733 11436849 -132349606 - L1MC4 LINE L1 -295 7747 7643 2277 85 0 10 chr12 11436849 11437143 -132349312 - AluSc SINE Alu -11 298 8 1380 254 106 11 chr12 11437143 11437490 -132348965 - L1MC4 LINE L1 -399 7643 7240 1653 201 98 8 chr12 11437496 11437874 -132348581 - L1MC4 LINE L1 -956 7086 6675 871 253 125 142 chr12 11438032 11438493 -132347962 + L2 LINE L2 1701 2169 -1145 2366 81 0 0 chr12 11438493 11438807 -132347648 + AluY SINE Alu 1 314 0 871 253 125 142 chr12 11438807 11439603 -132346852 + L2 LINE L2 2169 2937 -377 381 261 193 43 chr12 11441168 11441375 -132345080 - MIR SINE MIR -6 256 19 201 121 0 0 chr12 11441586 11441619 -132344836 + (GGA)n Simple_repeat Simple_repeat 1 33 0 1307 187 53 28 chr12 11442339 11442773 -132343682 + Charlie1b DNA MER1_type 35 523 0 819 89 0 0 chr12 11444681 11444793 -132341662 + L1PB1 LINE L1 6033 6144 -7 2058 111 34 7 chr12 11446509 11446807 -132339648 - AluSx SINE Alu -6 306 1 27 0 0 0 chr12 11446883 11446910 -132339545 + AT_rich Low_complexity Low_complexity 1 27 0 2190 112 10 3 chr12 11447020 11447315 -132339140 + AluSq SINE Alu 1 297 -16 246 289 39 67 chr12 11447987 11448091 -132338364 - MIR3 SINE MIR -23 185 85 474 304 51 0 chr12 11450442 11450600 -132335855 + MIR3 SINE MIR 30 195 -13 302 256 109 119 chr12 11454633 11454827 -132331628 - L1M2 LINE L1 -5774 1075 881 207 0 0 0 chr12 11454827 11454850 -132331605 + (TGG)n Simple_repeat Simple_repeat 2 24 0 302 256 109 119 chr12 11454850 11455050 -132331405 - L1M2 LINE L1 -5968 881 685 227 366 20 10 chr12 11455979 11456080 -132330375 + MIR SINE MIR 28 129 -133 268 333 0 0 chr12 11456289 11456364 -132330091 + L2 LINE L2 3193 3267 -5 194 304 22 54 chr12 11457150 11457242 -132329213 - L2 LINE L2 0 3272 3184 731 193 24 54 chr12 11457595 11457761 -132328694 - MER69A DNA AcHobo 0 177 17 292 286 0 61 chr12 11457877 11457975 -132328480 - MLT2E LTR ERVL -496 132 41 966 188 87 42 chr12 11458462 11458750 -132327705 - MER33 DNA MER1_type -22 302 2 442 304 70 19 chr12 11459447 11459605 -132326850 - MIR3 SINE MIR -20 188 23 1645 117 0 107 chr12 11459676 11459974 -132326481 + AluJb SINE Alu 32 297 -15 351 0 0 0 chr12 11460722 11460761 -132325694 + (TA)n Simple_repeat Simple_repeat 1 39 0 1730 189 34 20 chr12 11461082 11461432 -132325023 - MLT1A1 LTR MaLR -8 357 3 26 82 0 0 chr12 11461521 11461582 -132324873 + AT_rich Low_complexity Low_complexity 1 61 0 32 0 0 0 chr12 11461965 11461997 -132324458 + AT_rich Low_complexity Low_complexity 1 32 0 933 147 223 83 chr12 11463015 11463280 -132323175 - AluJb SINE Alu 0 302 1 538 294 52 26 chr12 11463427 11463621 -132322834 - MIR SINE MIR -62 200 2 596 258 134 28 chr12 11464696 11465144 -132321311 + LTR33 LTR ERVL 12 521 0 450 155 14 0 chr12 11465317 11465388 -132321067 - MER81 DNA DNA -42 72 1 381 175 16 0 chr12 11466577 11466640 -132319815 - MER81 DNA DNA -42 72 9 649 285 79 19 chr12 11466650 11466767 -132319688 + MIR SINE MIR 32 140 -122 1550 184 7 31 chr12 11466767 11467061 -132319394 + AluJo SINE Alu 2 288 -24 649 285 79 19 chr12 11467061 11467157 -132319298 + MIR SINE MIR 140 258 -4 21 0 0 0 chr12 11468132 11468153 -132318302 + AT_rich Low_complexity Low_complexity 1 21 0 2423 74 3 0 chr12 11468661 11468958 -132317497 + AluSg SINE Alu 1 298 -12 2454 253 51 45 chr12 11469046 11470086 -132316369 + L1MC4 LINE L1 6997 8042 0 21 57 0 0 chr12 11470200 11470235 -132316220 + AT_rich Low_complexity Low_complexity 1 35 0 1717 201 0 0 chr12 11470762 11471050 -132315405 - AluJb SINE Alu -24 288 1 1132 183 24 56 chr12 11471187 11471438 -132315017 + MLT1A2 LTR MaLR 1 243 -131 758 230 24 12 chr12 11471535 11471700 -132314755 + MLT1A2 LTR MaLR 208 374 0 1479 186 15 22 chr12 11472105 11472379 -132314076 - AluJo SINE Alu -12 300 29 435 333 0 0 chr12 11472639 11472783 -132313672 + MER117 DNA MER1_type 9 152 -45 212 353 86 11 chr12 11474084 11474271 -132312184 - MIR SINE MIR -31 231 31 718 244 10 70 chr12 11474621 11474822 -132311633 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr12 11475012 11475033 -132311422 + AT_rich Low_complexity Low_complexity 1 21 0 26050 78 211 5 chr12 11475050 11480120 -132306335 - L1PA6 LINE L1 -5 6149 15 835 209 7 0 chr12 11480120 11480268 -132306187 - AluJb SINE Alu -27 285 137 1358 194 0 27 chr12 11480348 11480611 -132305844 - AluJo SINE Alu -36 276 21 21 36 0 0 chr12 11480628 11480656 -132305799 + AT_rich Low_complexity Low_complexity 1 28 0 424 308 50 18 chr12 11481647 11481828 -132304627 + MIR SINE MIR 1 185 -59 256 305 143 9 chr12 11482259 11482364 -132304091 - MIR SINE MIR -59 149 31 322 320 45 34 chr12 11483575 11483753 -132302702 - L1MEd LINE L1 -5899 220 41 313 275 62 28 chr12 11483793 11483971 -132302484 - L1M4 LINE L1 -1497 4649 4466 239 362 64 0 chr12 11484602 11484696 -132301759 - L2 LINE L2 -39 3233 3134 204 167 0 0 chr12 11485017 11485065 -132301390 + (TG)n Simple_repeat Simple_repeat 1 48 0 439 319 133 19 chr12 11485788 11485998 -132300457 + MIR SINE MIR 2 235 -27 1021 141 7 0 chr12 11486002 11486151 -132300304 + AluSx SINE Alu 1 150 -163 465 143 36 0 chr12 11486152 11486236 -132300219 - AluJ/FLAM SINE Alu -225 87 1 1764 155 82 18 chr12 11486251 11486593 -132299862 - THE1B LTR MaLR 0 364 1 11289 103 6 6 chr12 11486597 11488173 -132298282 - THE1B-int LTR MaLR -4 1576 1 2059 130 67 14 chr12 11488173 11488519 -132297936 - THE1B LTR MaLR 0 364 1 298 277 123 8 chr12 11488527 11488657 -132297798 - MIR SINE MIR -42 220 76 865 131 31 0 chr12 11488979 11489109 -132297346 + AluSx SINE Alu 158 291 -19 263 299 69 11 chr12 11489401 11489488 -132296967 - L2 LINE L2 -64 3208 3117 278 303 0 64 chr12 11490064 11490173 -132296282 - L2 LINE L2 -16 3297 3196 2472 172 88 24 chr12 11492549 11493096 -132293359 - L1 LINE L1 -1139 5243 4662 2828 252 15 21 chr12 11493117 11494217 -132292238 - L1M4c LINE L1 -3248 3858 2764 21 0 0 0 chr12 11494456 11494477 -132291978 + AT_rich Low_complexity Low_complexity 1 21 0 1150 187 41 4 chr12 11494479 11494725 -132291730 - L1MC2 LINE L1 -11 6333 6079 22 0 0 0 chr12 11494855 11494877 -132291578 + AT_rich Low_complexity Low_complexity 1 22 0 1986 251 130 17 chr12 11494926 11495800 -132290655 - L1M4c LINE L1 -4519 2518 1761 1621 162 49 35 chr12 11495800 11496084 -132290371 - AluJo SINE Alu -24 288 1 1986 251 130 17 chr12 11496084 11496757 -132289698 - L1M4c LINE L1 -5276 1761 1165 352 284 17 0 chr12 11496844 11496960 -132289495 - L1ME3 LINE L1 -2 6160 6043 536 197 44 9 chr12 11497242 11497459 -132288996 - L1ME3 LINE L1 -718 5444 5219 190 333 27 54 chr12 11498934 11499045 -132287410 + MIR3 SINE MIR 91 198 -10 545 275 90 34 chr12 11499664 11499897 -132286558 - MIR SINE MIR -1 261 16 23 54 0 0 chr12 11502459 11502496 -132283959 + AT_rich Low_complexity Low_complexity 1 37 0 738 261 225 14 chr12 11503916 11504280 -132282175 - LTR16A1 LTR ERVL 0 457 17 2583 202 26 10 chr12 11504430 11505013 -132281442 + L1MD3 LINE L1 7399 7990 -5 1424 186 4 8 chr12 11505703 11505961 -132280494 - AluJo SINE Alu -13 299 43 238 279 204 35 chr12 11506382 11506554 -132279901 + L2 LINE L2 3113 3313 0 258 193 34 42 chr12 11506789 11506908 -132279547 + (TA)n Simple_repeat Simple_repeat 2 119 0 240 273 156 0 chr12 11507662 11507739 -132278716 - L2 LINE L2 0 3272 3184 366 352 6 0 chr12 11508337 11508499 -132277956 - L1MC4a LINE L1 -1939 5869 5707 2534 200 39 15 chr12 11508528 11509063 -132277392 - MER74A LTR ERVL 0 558 11 28 29 0 0 chr12 11509200 11509235 -132277220 + AT_rich Low_complexity Low_complexity 1 35 0 384 264 0 0 chr12 11509913 11510034 -132276421 - L1MA4 LINE L1 -4 6296 6176 26 0 0 0 chr12 11511458 11511484 -132274971 + GC_rich Low_complexity Low_complexity 1 26 0 618 298 92 0 chr12 11514467 11514783 -132271672 - L1ME3A LINE L1 -208 5962 5618 973 225 131 0 chr12 11515032 11515276 -132271179 + AluJo SINE Alu 1 276 -36 371 337 18 12 chr12 11515385 11515548 -132270907 - HAL1 LINE L1 -954 1553 1390 421 221 106 53 chr12 11515640 11515848 -132270607 - L1MEd LINE L1 -4967 1152 934 21 36 0 0 chr12 11517469 11517497 -132268958 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 11517791 11517814 -132268641 + AT_rich Low_complexity Low_complexity 1 23 0 1589 194 0 3 chr12 11517836 11518124 -132268331 + AluJb SINE Alu 12 298 -14 419 192 21 175 chr12 11518553 11518787 -132267668 - L1ME1 LINE L1 -224 5938 5738 309 277 0 0 chr12 11518790 11518884 -132267571 + L1M4 LINE L1 4936 5029 -1117 1242 204 13 43 chr12 11519158 11519462 -132266993 - AluJb SINE Alu -7 295 1 478 346 178 15 chr12 11519615 11519947 -132266508 - L2 LINE L2 -1115 2199 1814 354 330 47 28 chr12 11520006 11520221 -132266234 + HERV16 LTR ERVL 1694 1912 -3084 2028 202 67 27 chr12 11520263 11520787 -132265668 + MER50 LTR ERV1 3 547 -187 1866 100 4 4 chr12 11521476 11521737 -132264718 - AluSc SINE Alu -5 304 44 24 32 0 0 chr12 11522184 11522215 -132264240 + AT_rich Low_complexity Low_complexity 1 31 0 873 185 43 96 chr12 11523042 11523323 -132263132 + LTR12 LTR ERV1 1 266 -448 879 328 6 20 chr12 11523344 11523686 -132262769 + HERV16 LTR ERVL 2832 3168 -2486 249 354 12 0 chr12 11523830 11523912 -132262543 - MER45 DNA AcHobo -1495 86 4 562 281 34 17 chr12 11524084 11524262 -132262193 - LTR36 LTR ERV1 0 611 431 801 161 142 51 chr12 11524360 11524614 -132261841 - LTR36 LTR ERV1 -332 279 3 21 0 0 0 chr12 11525108 11525129 -132261326 + AT_rich Low_complexity Low_complexity 1 21 0 466 304 23 35 chr12 11525322 11525493 -132260962 - LTR38-int LTR ERV1 -1494 292 124 215 309 71 36 chr12 11525800 11525968 -132260487 - L2 LINE L2 -5 3308 3135 209 135 27 0 chr12 11525971 11526008 -132260447 + (TA)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr12 11529022 11529052 -132257403 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr12 11529824 11529846 -132256609 + AT_rich Low_complexity Low_complexity 1 22 0 251 260 26 13 chr12 11529907 11529984 -132256471 - L1ME3 LINE L1 -81 6081 6004 661 292 73 3 chr12 11530098 11530413 -132256042 - L1ME3 LINE L1 -206 5956 5620 21 0 0 0 chr12 11531119 11531140 -132255315 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr12 11531384 11531432 -132255023 + AT_rich Low_complexity Low_complexity 1 48 0 1039 198 31 55 chr12 11531653 11531930 -132254525 + LTR10B LTR ERV1 312 547 0 403 239 27 12 chr12 11531930 11532071 -132254384 - L1ME LINE L1 -347 5823 5678 2040 139 0 25 chr12 11532392 11532738 -132253717 - AluY SINE Alu 0 338 1 279 277 54 61 chr12 11534102 11534250 -132252205 + MIR SINE MIR 5 151 -111 1661 161 11 3 chr12 11534250 11534535 -132251920 + AluSx SINE Alu 1 287 -25 1687 175 31 3 chr12 11534721 11535012 -132251443 - AluJo SINE Alu -13 299 1 1407 341 57 32 chr12 11535089 11535679 -132250776 + HERVL40 LTR ERVL 2141 2714 -3050 1291 203 0 28 chr12 11535679 11535994 -132250461 + AluJb SINE Alu 3 309 0 1407 341 57 32 chr12 11535994 11536572 -132249883 + HERVL40 LTR ERVL 2714 3340 -2424 1844 107 0 4 chr12 11537243 11537495 -132248960 - AluSc SINE Alu -17 292 42 31 0 0 0 chr12 11537890 11537921 -132248534 + AT_rich Low_complexity Low_complexity 1 31 0 331 130 0 19 chr12 11538757 11538811 -132247644 + LTR12 LTR ERV1 1 53 -661 2107 76 7 4 chr12 11539858 11540171 -132246284 + AluY SINE Alu 4 317 0 252 0 0 0 chr12 11541885 11541913 -132244542 + (TA)n Simple_repeat Simple_repeat 2 29 0 195 100 0 0 chr12 11541912 11541942 -132244513 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 292 333 39 39 chr12 11543017 11543173 -132243282 + L2 LINE L2 3158 3313 0 427 220 158 46 chr12 11544011 11544270 -132242185 - L1MEd LINE L1 -4910 1209 922 1819 157 3 7 chr12 11545278 11545572 -132240883 - AluSq SINE Alu -19 294 2 728 334 30 34 chr12 11545822 11546323 -132240132 + HERVL40 LTR ERVL 2803 3301 -2353 21 0 0 0 chr12 11547635 11547656 -132238799 + GC_rich Low_complexity Low_complexity 1 21 0 1102 129 0 0 chr12 11547841 11548012 -132238443 - L1 LINE L1 -1307 4839 4669 266 305 32 19 chr12 11548073 11548227 -132238228 + L1MEc LINE L1 1419 1574 -4822 589 302 63 7 chr12 11548535 11548851 -132237604 + L1ME3 LINE L1 5618 5948 -216 2347 84 0 3 chr12 11548906 11549203 -132237252 + AluSx SINE Alu 1 296 -16 378 245 20 41 chr12 11549488 11549635 -132236820 + MER50 LTR ERV1 575 718 -16 419 209 0 44 chr12 11549765 11549856 -132236599 - AluJ SINE Alu -23 289 203 800 171 5 37 chr12 11549856 11550043 -132236412 + LTR36 LTR ERV1 1 181 -430 832 254 84 25 chr12 11550211 11550269 -132236186 + LTR36 LTR ERV1 293 346 -265 1820 218 81 11 chr12 11550269 11550741 -132235714 + LTR22 LTR ERVK 1 505 -4 832 254 84 25 chr12 11550741 11550966 -132235489 + LTR36 LTR ERV1 346 593 -18 853 211 0 84 chr12 11550981 11551208 -132235247 - AluJ SINE Alu -104 208 1 607 321 81 28 chr12 11551285 11551710 -132234745 + HERVL40 LTR ERVL 2106 2548 -2937 1636 150 14 24 chr12 11552045 11552356 -132234099 - AluSx SINE Alu 0 308 1 1330 339 53 43 chr12 11552452 11553011 -132233444 + HERVL40 LTR ERVL 2132 2709 -2945 1595 197 0 0 chr12 11553011 11553295 -132233160 + AluJb SINE Alu 3 286 -26 1330 339 53 43 chr12 11553295 11553805 -132232650 + HERVL40 LTR ERVL 2709 3212 -2442 239 270 51 73 chr12 11555029 11555166 -132231289 - L2 LINE L2 0 3313 3180 22 80 0 0 chr12 11556162 11556212 -132230243 + AT_rich Low_complexity Low_complexity 1 50 0 205 163 47 0 chr12 11556332 11556375 -132230080 + (CATA)n Simple_repeat Simple_repeat 1 45 0 1395 101 0 0 chr12 11557241 11557430 -132229025 - L1P LINE L1 -5927 219 31 962 198 23 12 chr12 11557430 11557688 -132228767 + HSMAR2 DNA Mariner 1040 1300 -2 975 226 0 66 chr12 11558448 11558735 -132227720 + AluJo SINE Alu 12 279 -33 652 238 11 106 chr12 11559184 11559541 -132226914 + MLT1B LTR MaLR 50 372 -18 4439 203 27 29 chr12 11560374 11561393 -132225062 + HSMAR2 DNA Mariner 5 1023 -279 5364 111 5 68 chr12 11561393 11562275 -132224180 + LTR12 LTR ERV1 1 826 0 4439 203 27 29 chr12 11562275 11562376 -132224079 + HSMAR2 DNA Mariner 1023 1123 -179 363 333 19 6 chr12 11562378 11562537 -132223918 + HERVL40 LTR ERVL 109 269 -5261 331 370 54 33 chr12 11562619 11562954 -132223501 + HERVL40 LTR ERVL 1066 1407 -4123 261 57 0 0 chr12 11563097 11563132 -132223323 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1253 245 3 17 chr12 11563134 11563424 -132223031 - AluJo SINE Alu -14 288 3 300 250 13 0 chr12 11563788 11563864 -132222591 + HERVL40 LTR ERVL 2051 2127 -3403 259 243 90 48 chr12 11564000 11564189 -132222266 + L1ME LINE L1 699 895 -5175 573 231 7 14 chr12 11564268 11564415 -132222040 + MLT1B LTR MaLR 240 385 -5 214 305 24 0 chr12 11564420 11564502 -132221953 - L2 LINE L2 -924 2390 2307 3341 201 32 41 chr12 11565234 11566144 -132220311 + HSMAR2 DNA Mariner 3 904 -398 777 175 54 0 chr12 11566152 11566318 -132220137 - HSMAR2 DNA Mariner -283 1019 845 1906 107 11 4 chr12 11566318 11566599 -132219856 + L1PB1 LINE L1 5866 6148 -3 1258 205 31 0 chr12 11566615 11566908 -132219547 + HSMAR2 DNA Mariner 1001 1302 0 1128 234 0 64 chr12 11567660 11567972 -132218483 + AluJo SINE Alu 1 292 -10 561 232 28 113 chr12 11568400 11568762 -132217693 + MLT1B LTR MaLR 47 377 -13 271 247 41 31 chr12 11568762 11568859 -132217596 - L2 LINE L2 -910 2404 2307 2140 90 35 39 chr12 11569635 11569947 -132216508 + AluY SINE Alu 1 311 0 4224 202 37 26 chr12 11569948 11571018 -132215437 + HSMAR2 DNA Mariner 42 1123 -179 393 271 25 0 chr12 11571020 11571138 -132215317 + HERVL40 LTR ERVL 109 229 -5301 325 213 0 0 chr12 11572306 11572367 -132214088 - MER69 DNA AcHobo -97 80 20 245 331 58 16 chr12 11573016 11573137 -132213318 + HAL1 LINE L1 19 144 -2363 204 111 0 0 chr12 11573442 11573478 -132212977 + (TC)n Simple_repeat Simple_repeat 1 36 0 826 274 73 0 chr12 11573817 11574076 -132212379 - MLT1G1 LTR MaLR -311 284 7 326 269 200 29 chr12 11574992 11575167 -132211288 + MIR SINE MIR 2 206 -56 6361 35 1 0 chr12 11575586 11576383 -132210072 - L1PA4 LINE L1 -3 6152 5355 242 327 48 43 chr12 11576383 11576591 -132209864 - L2 LINE L2 -625 2689 2481 270 230 0 27 chr12 11576635 11576709 -132209746 + MLT1B LTR MaLR 1 72 -318 218 357 32 45 chr12 11581598 11581752 -132204703 - MER5A DNA MER1_type -5 184 33 326 315 7 0 chr12 11582296 11582446 -132204009 - L1MC/D LINE L1 -316 5805 5668 1755 171 0 0 chr12 11583008 11583289 -132203166 - AluSx SINE Alu -31 281 1 401 287 84 40 chr12 11583600 11583802 -132202653 + MIR SINE MIR 18 228 -34 477 383 70 11 chr12 11583843 11584311 -132202144 + L2 LINE L2 1366 1861 -1453 3827 201 19 6 chr12 11584386 11585246 -132201209 + HSMAR2 DNA Mariner 5 875 -427 693 200 119 117 chr12 11585740 11586244 -132200211 - MLT1D LTR MaLR 0 505 1 949 207 108 16 chr12 11586447 11586819 -132199636 - L1MDa LINE L1 -3986 2554 2149 370 268 31 8 chr12 11586819 11586946 -132199509 - MLT1D LTR MaLR -56 449 320 1591 263 68 52 chr12 11587011 11588063 -132198392 - L1MDa LINE L1 -4411 2129 1061 267 208 52 39 chr12 11588119 11588196 -132198259 - HERVL40 LTR ERVL -3403 2127 2050 1326 248 7 10 chr12 11588559 11588866 -132197589 + AluJo SINE Alu 1 306 -6 4552 199 39 13 chr12 11589577 11590668 -132195787 - HSMAR2 DNA Mariner -179 1123 5 1879 152 20 0 chr12 11590955 11591258 -132195197 + AluSg SINE Alu 1 309 -1 296 247 199 60 chr12 11591515 11591681 -132194774 + MIR SINE MIR 2 190 -72 399 322 82 46 chr12 11592149 11592478 -132193977 - L2 LINE L2 -530 2784 2444 1087 253 15 52 chr12 11592522 11592922 -132193533 + MLT1B LTR MaLR 1 385 -5 188 297 33 11 chr12 11592927 11593018 -132193437 - L2 LINE L2 -924 2390 2298 1289 207 45 6 chr12 11593738 11594072 -132192383 + HSMAR2 DNA Mariner 3 349 -953 36635 84 7 6 chr12 11594079 11600214 -132186241 + L1PA5 LINE L1 11 6151 -3 2375 179 26 43 chr12 11600242 11600824 -132185631 + HSMAR2 DNA Mariner 333 904 -398 878 144 0 0 chr12 11600832 11600971 -132185484 - HSMAR2 DNA Mariner -283 1019 881 1717 126 11 4 chr12 11601005 11601283 -132185172 + L1PB1 LINE L1 5871 6150 -1 1097 223 10 10 chr12 11601304 11601604 -132184851 + HSMAR2 DNA Mariner 1001 1300 -2 1076 212 3 57 chr12 11602356 11602639 -132183816 + AluJo SINE Alu 9 276 -36 381 93 0 0 chr12 11602639 11602693 -132183762 + (TG)n Simple_repeat Simple_repeat 1 54 0 246 239 0 0 chr12 11602698 11602769 -132183686 + (TA)n Simple_repeat Simple_repeat 2 72 0 249 132 57 0 chr12 11602769 11602822 -132183633 + L1MCa LINE L1 2006 2061 -4365 252 253 0 0 chr12 11602826 11602901 -132183554 + (TA)n Simple_repeat Simple_repeat 2 76 0 650 250 8 108 chr12 11603347 11603699 -132182756 + MLT1B LTR MaLR 57 373 -17 222 220 0 34 chr12 11603716 11603775 -132182680 - L2 LINE L2 -924 2390 2334 257 183 14 84 chr12 11604286 11604357 -132182098 + HERVL40 LTR ERVL 2061 2126 -3404 383 271 64 20 chr12 11604493 11604696 -132181759 + L1ME LINE L1 699 910 -5160 573 261 23 11 chr12 11604730 11604906 -132181549 + MLT1B LTR MaLR 208 385 -5 222 244 37 12 chr12 11604911 11604993 -132181462 - L2 LINE L2 -924 2390 2307 3508 200 30 31 chr12 11605732 11606629 -132179826 + HSMAR2 DNA Mariner 3 898 -404 767 170 27 0 chr12 11606643 11606790 -132179665 - HSMAR2 DNA Mariner -283 1019 869 1831 121 11 4 chr12 11606802 11607083 -132179372 + L1PB1 LINE L1 5866 6148 -3 1386 189 17 0 chr12 11607099 11607396 -132179059 + HSMAR2 DNA Mariner 1001 1302 0 1200 236 0 45 chr12 11608152 11608461 -132177994 + AluJo SINE Alu 1 295 -7 697 246 13 104 chr12 11608887 11609266 -132177189 + MLT1B LTR MaLR 47 396 0 192 229 48 48 chr12 11609266 11609349 -132177106 - L2 LINE L2 -924 2390 2308 2058 113 37 7 chr12 11610123 11610423 -132176032 + AluY SINE Alu 1 309 -2 4229 212 28 25 chr12 11610424 11611503 -132174952 + HSMAR2 DNA Mariner 42 1123 -179 262 227 67 50 chr12 11611505 11611624 -132174831 + HERVL40 LTR ERVL 109 229 -5301 288 246 43 0 chr12 11612788 11612857 -132173598 - MER69 DNA AcHobo -97 80 9 240 276 60 85 chr12 11613500 11613699 -132172756 + HAL1 LINE L1 19 212 -2295 36729 42 1 1 chr12 11614252 11619787 -132166668 - L1PA4 LINE L1 -1 6154 623 779 42 0 0 chr12 11619787 11619883 -132166572 - L1PA4 LINE L1 -6050 96 1 859 257 82 0 chr12 11619921 11620178 -132166277 - MLT1G1 LTR MaLR -311 284 7 365 247 202 51 chr12 11621115 11621293 -132165162 + MIR SINE MIR 2 206 -56 432 361 30 23 chr12 11621617 11621919 -132164536 - L2 LINE L2 -530 2784 2481 289 216 0 27 chr12 11621963 11622037 -132164418 + MLT1B LTR MaLR 1 72 -318 196 339 78 43 chr12 11624414 11624644 -132161811 - L2 LINE L2 -490 2824 2587 302 327 39 46 chr12 11626449 11626602 -132159853 - MER5A DNA MER1_type -5 184 33 21 36 0 0 chr12 11627069 11627097 -132159358 + AT_rich Low_complexity Low_complexity 1 28 0 321 327 16 0 chr12 11627110 11627297 -132159158 - L1MC/D LINE L1 -316 5805 5668 1855 171 0 0 chr12 11627730 11628029 -132158426 - AluSx SINE Alu -13 299 1 278 306 91 0 chr12 11628395 11628516 -132157939 + MIR SINE MIR 73 204 -58 768 343 78 15 chr12 11628658 11629250 -132157205 + L2 LINE L2 1444 2072 -1242 269 323 58 53 chr12 11629259 11629485 -132156970 + L2 LINE L2 2375 2601 -713 2546 241 17 17 chr12 11629787 11630512 -132155943 - L1PB4 LINE L1 -4 6152 5428 3047 72 0 0 chr12 11630518 11630920 -132155535 - L1PA8 LINE L1 -2 6170 5769 40916 33 21 1 chr12 11630941 11636970 -132149485 - L1PA2 LINE L1 0 6155 2 2173 77 3 0 chr12 11636979 11637279 -132149176 - L1PA8 LINE L1 -391 5781 5481 1229 134 0 0 chr12 11637279 11637458 -132148997 - AluSg/x SINE Alu -7 305 127 1799 144 35 3 chr12 11637471 11637755 -132148700 - AluSq SINE Alu -20 293 1 2462 94 10 0 chr12 11637755 11638260 -132148195 - L1PA8 LINE L1 -663 5491 4982 41196 47 4 2 chr12 11638265 11644390 -132142065 - L1PA4 LINE L1 -10 6145 7 6617 55 3 13 chr12 11644397 11645721 -132140734 - L1P2 LINE L1 -373 5781 4474 2483 40 15 0 chr12 11645720 11646045 -132140410 + L1P2 LINE L1 4125 4454 -1692 * 12414 100 7 1 chr12 11646049 11647976 -132138479 - L1PA8 LINE L1 -1158 4988 3051 198 71 0 0 chr12 11647976 11648004 -132138451 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 3088 74 0 0 chr12 11648007 11648411 -132138044 - L1PA6 LINE L1 -19 6135 5732 3771 190 26 32 chr12 11649182 11650089 -132136366 + HSMAR2 DNA Mariner 3 904 -398 942 163 17 0 chr12 11650097 11650269 -132136186 - HSMAR2 DNA Mariner -283 1019 845 1660 117 10 67 chr12 11650269 11650569 -132135886 + L1PB1 LINE L1 5866 6148 -3 1045 205 34 24 chr12 11650591 11650888 -132135567 + HSMAR2 DNA Mariner 1001 1300 -2 1098 231 10 70 chr12 11651646 11651733 -132134722 + AluJo SINE Alu 1 92 -210 2477 65 7 10 chr12 11651733 11652041 -132134414 + AluY SINE Alu 1 307 -4 1098 231 10 70 chr12 11652041 11652265 -132134190 + AluJo SINE Alu 92 293 -9 791 265 6 74 chr12 11652690 11653041 -132133414 + MLT1B LTR MaLR 47 373 -17 240 289 31 10 chr12 11653044 11653141 -132133314 - L2 LINE L2 -909 2405 2307 4754 193 23 28 chr12 11653850 11654974 -132131481 + HSMAR2 DNA Mariner 5 1123 -179 296 316 38 19 chr12 11654976 11655134 -132131321 + HERVL40 LTR ERVL 109 269 -5261 201 94 0 0 chr12 11655682 11655714 -132130741 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1290 231 7 21 chr12 11655716 11656006 -132130449 - AluJo SINE Alu -14 288 3 1389 291 39 45 chr12 11656568 11657584 -132128871 + L1MDa LINE L1 1120 2129 -4411 496 211 23 16 chr12 11657649 11657777 -132128678 + MLT1D LTR MaLR 321 449 -56 225 213 138 0 chr12 11657777 11657871 -132128584 + L1MDa LINE L1 2149 2255 -4285 293 246 0 0 chr12 11658424 11658485 -132127970 - MER69 DNA AcHobo -97 80 20 188 291 82 45 chr12 11659063 11659173 -132127282 - L2 LINE L2 -499 2815 2702 * 246 265 43 74 chr12 11659139 11659301 -132127154 + HAL1 LINE L1 23 179 -2328 233 106 0 21 chr12 11659546 11659593 -132126862 + (TC)n Simple_repeat Simple_repeat 1 46 0 28 0 0 0 chr12 11659667 11659695 -132126760 + AT_rich Low_complexity Low_complexity 1 28 0 2563 45 0 0 chr12 11659696 11660006 -132126449 - L1PA5 LINE L1 -9 6145 5836 297 68 0 0 chr12 11660142 11660186 -132126269 + (TC)n Simple_repeat Simple_repeat 1 44 0 206 411 33 0 chr12 11660202 11660382 -132126073 + MIR SINE MIR 67 252 -10 931 239 80 0 chr12 11660529 11660792 -132125663 - MLT1G1 LTR MaLR -311 284 1 259 279 188 48 chr12 11661744 11661909 -132124546 + MIR SINE MIR 2 189 -73 266 94 57 0 chr12 11662059 11662112 -132124343 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 224 333 64 18 chr12 11662313 11662484 -132123971 - L2 LINE L2 -655 2659 2481 298 216 0 27 chr12 11662534 11662608 -132123847 + MLT1B LTR MaLR 1 72 -318 180 370 34 63 chr12 11665097 11665448 -132121007 - L2 LINE L2 -455 2859 2519 319 325 32 45 chr12 11667497 11667651 -132118804 - MER5A DNA MER1_type -5 184 33 319 234 27 120 chr12 11668115 11668299 -132118156 - L1MC/D LINE L1 -320 5801 5711 1700 192 3 3 chr12 11668893 11669190 -132117265 - AluSx SINE Alu -15 297 1 310 298 32 0 chr12 11669556 11669650 -132116805 + MIR SINE MIR 73 169 -93 851 321 93 21 chr12 11669744 11670410 -132116045 + L2 LINE L2 1359 2072 -1242 201 338 183 43 chr12 11670419 11670883 -132115572 + L2 LINE L2 2375 2903 -411 2622 236 27 7 chr12 11670939 11671647 -132114808 - L1PB4 LINE L1 -3 6153 5432 5187 82 0 0 chr12 11671657 11672350 -132114105 - L1PA8 LINE L1 -2 6170 5478 1276 118 0 16 chr12 11672350 11672525 -132113930 - AluSc SINE Alu -10 299 126 1795 155 31 7 chr12 11672527 11672818 -132113637 - AluSq SINE Alu -15 298 1 27847 129 15 64 chr12 11672818 11678580 -132107875 - L1PA8 LINE L1 -681 5491 25 375 250 190 43 chr12 11679351 11679535 -132106920 + MIR SINE MIR 3 213 -49 474 320 90 20 chr12 11680039 11680339 -132106116 - L2 LINE L2 -550 2764 2444 750 235 87 69 chr12 11680386 11680764 -132105691 + MLT1B LTR MaLR 1 385 -5 1541 216 10 8 chr12 11681236 11681635 -132104820 - L1M2 LINE L1 -4353 2496 2097 890 247 75 11 chr12 11682220 11682487 -132103968 + MLT1G1 LTR MaLR 1 284 -311 204 354 62 8 chr12 11682676 11682806 -132103649 - MIR SINE MIR -54 208 72 484 191 65 10 chr12 11682807 11683006 -132103449 - L1 LINE L1 -1704 4442 4233 1244 87 22 0 chr12 11683025 11683209 -132103246 - L1PA13 LINE L1 -5 6158 5971 358 187 13 0 chr12 11683232 11683307 -132103148 + L1P LINE L1 4507 4582 -1564 4806 80 1 53 chr12 11683307 11684017 -132102438 + L1PA8 LINE L1 5492 6170 -2 367 155 113 10 chr12 11684019 11684116 -132102339 + L1MA7 LINE L1 6140 6246 -45 369 287 49 0 chr12 11684738 11684860 -132101595 - HAL1 LINE L1 -2357 150 23 341 200 15 0 chr12 11685518 11685583 -132100872 + MER69A DNA AcHobo 15 80 -97 720 221 248 45 chr12 11687521 11687732 -132098723 - MLT1D LTR MaLR 0 505 338 299 25 25 0 chr12 11687732 11687772 -132098683 + (CACAT)n Simple_repeat Simple_repeat 3 43 0 720 221 248 45 chr12 11687772 11687980 -132098475 - MLT1D LTR MaLR -167 338 1 1046 205 101 11 chr12 11688183 11688559 -132097896 - L1MDb LINE L1 -3986 2420 2011 1621 260 42 50 chr12 11688802 11688878 -132097577 - L1MDb LINE L1 -4473 1933 1858 2388 77 0 0 chr12 11688878 11689176 -132097279 - AluY SINE Alu -13 298 1 1621 260 42 50 chr12 11689176 11690105 -132096350 - L1MDb LINE L1 -4548 1858 938 271 300 77 65 chr12 11690225 11690472 -132095983 - HERVL40 LTR ERVL -3913 1617 1368 1414 225 7 10 chr12 11690591 11690893 -132095562 + AluJo SINE Alu 1 301 -1 5129 197 16 4 chr12 11691613 11692718 -132093737 - HSMAR2 DNA Mariner -179 1123 5 1350 217 18 53 chr12 11693523 11693919 -132092536 - MLT1B LTR MaLR -8 382 1 623 349 82 11 chr12 11693928 11694283 -132092172 + L2 LINE L2 2400 2779 -535 285 264 118 27 chr12 11695486 11695815 -132090640 + HAL1 LINE L1 810 1168 -1339 251 293 41 0 chr12 11695840 11695963 -132090492 + HAL1 LINE L1 1220 1347 -1160 349 275 0 0 chr12 11695975 11696066 -132090389 - Zaphod DNA AcHobo -1 4030 3940 3239 221 22 19 chr12 11696373 11696940 -132089515 + L1PB4 LINE L1 5099 5663 -635 2052 25 0 4 chr12 11696940 11697176 -132089279 + AluYa5 SINE Alu 76 310 -1 3239 221 22 19 chr12 11697176 11697675 -132088780 + L1PB4 LINE L1 5663 6295 -3 201 121 0 0 chr12 11697716 11697749 -132088706 + (GAA)n Simple_repeat Simple_repeat 3 35 0 506 224 72 0 chr12 11697791 11697943 -132088512 - MLT1B LTR MaLR -227 163 1 618 348 80 6 chr12 11697952 11698314 -132088141 + L2 LINE L2 2400 2788 -526 227 266 73 64 chr12 11698784 11698893 -132087562 - MIR SINE MIR -38 224 115 1925 158 0 0 chr12 11699124 11699422 -132087033 - AluJb SINE Alu -14 298 1 356 105 0 10 chr12 11699738 11699986 -132086469 + AluSx SINE Alu 1 299 -2 287 385 17 6 chr12 11700172 11700351 -132086104 - MIR SINE MIR -4 258 78 354 296 80 0 chr12 11700564 11700689 -132085766 - HAL1 LINE L1 -2363 144 10 2081 171 84 0 chr12 11700744 11701137 -132085318 + MSTB LTR MaLR 1 426 0 429 268 0 49 chr12 11701816 11701980 -132084475 + MER69A DNA AcHobo 21 176 -1 249 229 34 51 chr12 11702068 11702186 -132084269 - L1MC5 LINE L1 -520 7441 7326 519 192 13 46 chr12 11703026 11703177 -132083278 - L1MA10 LINE L1 0 6334 6189 2853 121 32 2 chr12 11703767 11704237 -132082218 + L1MA5A LINE L1 5633 6116 -181 1670 232 59 47 chr12 11705828 11706384 -132080071 + MLT1F1 LTR MaLR 1 563 -4 242 287 140 22 chr12 11707265 11707401 -132079054 + MLT1K LTR MaLR 428 579 -9 520 280 8 0 chr12 11707711 11707836 -132078619 - MER5B DNA MER1_type -2 176 51 656 215 42 64 chr12 11707836 11708124 -132078331 - L1MD3 LINE L1 -5 8037 7766 196 269 97 0 chr12 11708566 11708659 -132077796 + L3 LINE CR1 656 757 -820 2516 110 0 5 chr12 11710848 11711220 -132075235 - L1PB1 LINE L1 -1 6150 5781 234 217 0 48 chr12 11711233 11711316 -132075139 + L1MCa LINE L1 1991 2069 -4357 13979 162 42 45 chr12 11711333 11716439 -132070016 - L1P5 LINE L1 -361 6506 1423 1478 150 73 7 chr12 11716823 11717109 -132069346 + LTR19A LTR ERV1 1 305 -181 25 83 0 0 chr12 11717328 11717388 -132069067 + AT_rich Low_complexity Low_complexity 1 60 0 1274 161 4 12 chr12 11717388 11717630 -132068825 - L1MA9 LINE L1 -2 6310 6071 2921 199 88 22 chr12 11718948 11719642 -132066813 - L1MC3 LINE L1 0 7785 7046 2895 181 79 28 chr12 11719656 11720292 -132066163 - L1MC3 LINE L1 -924 6861 6194 2055 28 0 0 chr12 11720279 11720529 -132065926 - L1P LINE L1 -1586 4560 4311 * 7691 21 1 0 chr12 11720529 11722086 -132064369 + L1PA3 LINE L1 4628 6186 0 1058 177 57 34 chr12 11722098 11722363 -132064092 - L1MC3 LINE L1 -1573 6212 5942 1268 107 0 6 chr12 11722463 11722641 -132063814 + L1MC/D LINE L1 5458 5634 -699 3169 183 8 13 chr12 11722644 11723261 -132063194 - L1MC3 LINE L1 -1852 5933 5320 5274 149 18 2 chr12 11723280 11724133 -132062322 - L1MC1 LINE L1 -9 6324 5459 678 223 22 112 chr12 11725542 11725684 -132060771 + MIR SINE MIR 18 126 -136 2135 110 0 17 chr12 11725684 11725985 -132060470 - AluSq SINE Alu -17 296 1 678 223 22 112 chr12 11725985 11726111 -132060344 + MIR SINE MIR 126 262 0 4309 217 80 55 chr12 11726828 11726965 -132059490 - L1MC4 LINE L1 0 8042 7910 210 71 0 0 chr12 11726965 11726993 -132059462 + (CA)n Simple_repeat Simple_repeat 1 28 0 4309 217 80 55 chr12 11726993 11727419 -132059036 - L1MC4 LINE L1 -132 7910 7496 231 36 0 0 chr12 11727419 11727447 -132059008 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 4309 217 80 55 chr12 11727447 11728313 -132058142 - L1MC4 LINE L1 -546 7496 6569 1780 140 117 26 chr12 11728313 11728655 -132057800 + THE1C LTR MaLR 1 373 -2 4309 217 80 55 chr12 11728655 11728753 -132057702 - L1MC4 LINE L1 -1473 6569 6475 428 181 14 0 chr12 11728753 11728825 -132057630 + MER2 DNA MER2_type 1 73 -272 2014 176 176 5 chr12 11728847 11729274 -132057181 + MER21B LTR ERV1 1 500 -363 2917 236 89 47 chr12 11729312 11729750 -132056705 - L1MC4a LINE L1 -1354 6454 6036 1941 172 7 0 chr12 11729750 11730058 -132056397 - AluSg SINE Alu 0 310 1 2917 236 89 47 chr12 11730058 11730481 -132055974 - L1MC4a LINE L1 -1772 6036 5539 2016 154 75 44 chr12 11730481 11730962 -132055493 + LTR54B LTR ERV1 1 496 -2 2917 236 89 47 chr12 11730962 11731145 -132055310 - L1MC4a LINE L1 -2269 5539 5365 346 288 23 45 chr12 11731491 11731623 -132054832 - MER5A DNA MER1_type -18 171 43 2734 162 40 12 chr12 11731779 11732273 -132054182 - L1MB3 LINE L1 -180 6003 5496 639 39 0 0 chr12 11732273 11732351 -132054104 + (TTCC)n Simple_repeat Simple_repeat 2 79 0 2468 167 36 9 chr12 11732351 11732870 -132053585 - LTR27 LTR ERV1 0 501 2 428 181 0 11 chr12 11732884 11732978 -132053477 + CT-rich Low_complexity Low_complexity 3 95 0 783 158 79 26 chr12 11732983 11733342 -132053113 - L1MB3 LINE L1 -685 5495 4504 348 157 0 14 chr12 11733343 11733413 -132053042 + MLT1D LTR MaLR 437 505 0 446 151 55 97 chr12 11733668 11733803 -132052652 + MLT1H LTR MaLR 445 549 0 368 325 55 48 chr12 11733807 11734078 -132052377 + L2 LINE L2 3032 3304 -9 2057 147 0 0 chr12 11734373 11734680 -132051775 - AluSx SINE Alu -5 307 1 957 245 82 35 chr12 11735063 11735430 -132051025 - L2 LINE L2 -349 2965 2582 1624 128 157 20 chr12 11735445 11735750 -132050705 + MSTA LTR MaLR 82 428 0 802 217 7 0 chr12 11735750 11735902 -132050553 - AluJo SINE Alu -157 155 3 622 253 41 0 chr12 11736098 11736244 -132050211 + MIR SINE MIR 111 262 0 351 344 78 13 chr12 11736424 11736578 -132049877 + MER97b DNA MER1_type? 14 177 -876 1946 125 38 0 chr12 11737429 11737716 -132048739 + AluSx SINE Alu 1 298 -14 327 348 30 6 chr12 11738732 11738896 -132047559 + HAL1 LINE L1 1525 1692 -815 21 57 0 0 chr12 11739024 11739059 -132047396 + AT_rich Low_complexity Low_complexity 1 35 0 1524 178 30 7 chr12 11739769 11740038 -132046417 + AluJo SINE Alu 12 286 -26 261 333 21 0 chr12 11740387 11740483 -132045972 + MIR SINE MIR 150 247 -15 626 137 20 0 chr12 11741235 11741337 -132045118 - MLT2B1 LTR ERVL -358 162 59 5422 109 6 1 chr12 11741337 11742119 -132044336 - L1PA13 LINE L1 -24 6139 5354 1842 189 45 8 chr12 11742247 11742629 -132043826 + MSTD LTR MaLR 1 396 0 2662 239 34 32 chr12 11742643 11743371 -132043084 + MSTD-int LTR MaLR 99 828 -907 2456 218 47 10 chr12 11743376 11743891 -132042564 + MSTD-int LTR MaLR 1202 1735 0 1577 199 94 0 chr12 11743891 11744253 -132042202 + MSTD LTR MaLR 1 396 0 307 298 71 94 chr12 11744407 11744662 -132041793 + L3 LINE CR1 305 553 -1024 694 149 0 0 chr12 11745347 11745454 -132041001 - AluJb SINE Alu -205 107 1 460 294 110 16 chr12 11745513 11745768 -132040687 - L1M4 LINE L1 -2034 4112 3834 481 306 165 65 chr12 11745817 11746478 -132039977 + L2 LINE L2 1893 2619 -695 295 216 10 10 chr12 11746522 11746619 -132039836 + CT-rich Low_complexity Low_complexity 4 100 0 24 53 0 0 chr12 11749191 11749229 -132037226 + AT_rich Low_complexity Low_complexity 1 38 0 2280 117 7 0 chr12 11749397 11749705 -132036750 - AluSx SINE Alu -2 310 1 2303 97 3 10 chr12 11751178 11751486 -132034969 - AluSx SINE Alu -6 306 1 862 65 36 50 chr12 11752114 11752253 -132034202 - L1PA13 LINE L1 0 6163 6027 271 273 10 50 chr12 11752949 11753048 -132033407 - L2 LINE L2 -4 3309 3215 515 179 0 54 chr12 11753262 11753374 -132033081 + MER5B DNA MER1_type 73 178 0 206 219 0 0 chr12 11755215 11755256 -132031199 + CT-rich Low_complexity Low_complexity 2 42 0 419 120 37 37 chr12 11756550 11756658 -132029797 + CT-rich Low_complexity Low_complexity 3 110 0 2200 104 0 7 chr12 11756663 11756951 -132029504 - AluSp SINE Alu -25 288 3 454 118 0 0 chr12 11758330 11758398 -132028057 - AluJ/FRAM SINE Alu -17 295 228 2105 176 26 3 chr12 11758906 11759258 -132027197 - MLT1A1 LTR MaLR -5 360 1 435 284 77 0 chr12 11760045 11760200 -132026255 + MIR SINE MIR 86 252 -10 408 214 92 23 chr12 11760595 11760726 -132025729 - L2 LINE L2 0 3313 3174 195 42 0 0 chr12 11760904 11760928 -132025527 + (TA)n Simple_repeat Simple_repeat 2 25 0 299 181 0 35 chr12 11760978 11761094 -132025361 + (TA)n Simple_repeat Simple_repeat 1 112 0 21 57 0 0 chr12 11762516 11762551 -132023904 + AT_rich Low_complexity Low_complexity 1 35 0 233 344 0 0 chr12 11763832 11763893 -132022562 + MER45 DNA AcHobo 39 99 -1482 1400 325 79 44 chr12 11763897 11764468 -132021987 - ERVL LTR ERVL -2359 3295 2746 1619 199 0 0 chr12 11764468 11764775 -132021680 - AluJb SINE Alu 0 309 3 1400 325 79 44 chr12 11764775 11765361 -132021094 - ERVL LTR ERVL -2908 2746 2096 1562 189 31 3 chr12 11765432 11765723 -132020732 + AluJo SINE Alu 1 299 -13 270 239 122 55 chr12 11765917 11766155 -132020300 + L1MEd LINE L1 922 1175 -4944 1603 70 14 5 chr12 11766524 11766738 -132019717 + AluY SINE Alu 83 298 -13 544 283 72 13 chr12 11766946 11767264 -132019191 + L1ME3 LINE L1 5620 5956 -206 266 266 25 13 chr12 11767374 11767453 -132019002 + L1ME3 LINE L1 6002 6081 -81 387 106 0 0 chr12 11771331 11771397 -132015058 + (TA)n Simple_repeat Simple_repeat 2 67 0 535 272 24 35 chr12 11771839 11772008 -132014447 + LTR38-int LTR ERV1 124 290 -1496 811 160 148 40 chr12 11772712 11772962 -132013493 + LTR36 LTR ERV1 3 279 -332 620 298 27 18 chr12 11773012 11773237 -132013218 + LTR36 LTR ERV1 385 611 0 273 329 12 0 chr12 11773409 11773491 -132012964 + MER45 DNA AcHobo 4 86 -1495 404 312 0 7 chr12 11773635 11773773 -132012682 - ERVL LTR ERVL -2557 3207 3071 250 333 0 0 chr12 11773845 11773932 -132012523 - ERVL LTR ERVL -2631 3023 2937 1716 144 10 38 chr12 11773969 11774261 -132012194 + AluSx SINE Alu 2 285 -27 24 0 0 0 chr12 11774261 11774285 -132012170 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 11774465 11774486 -132011969 + AT_rich Low_complexity Low_complexity 1 21 0 810 323 92 23 chr12 11774505 11775115 -132011340 - ERVL LTR ERVL -2816 2687 2018 1020 223 3 94 chr12 11775120 11775347 -132011108 + AluJo SINE Alu 1 192 -120 1578 183 68 122 chr12 11775347 11775993 -132010462 - LTR36 LTR ERV1 0 611 1 1020 223 3 94 chr12 11775993 11776083 -132010372 + AluJo SINE Alu 192 289 -23 3025 186 57 58 chr12 11776201 11776926 -132009529 - MER50 LTR ERV1 -8 726 3 583 338 180 3 chr12 11777252 11777580 -132008875 + L2 LINE L2 1814 2199 -1115 1322 219 14 7 chr12 11777737 11778025 -132008430 + AluJb SINE Alu 5 294 -18 21 57 0 0 chr12 11778092 11778127 -132008328 + AT_rich Low_complexity Low_complexity 1 35 0 1342 246 22 16 chr12 11778268 11778719 -132007736 - L1M4 LINE L1 -1117 5029 4576 1587 167 45 7 chr12 11778907 11779195 -132007260 + AluJo SINE Alu 1 299 -13 311 256 98 74 chr12 11779296 11779499 -132006956 - MIR SINE MIR -50 212 5 527 251 75 63 chr12 11780201 11780520 -132005935 - HAL1 LINE L1 -273 2234 1912 228 298 138 0 chr12 11782071 11782165 -132004290 - MIR SINE MIR -119 143 37 2527 33 0 7 chr12 11782563 11782865 -132003590 - AluY SINE Alu -11 300 1 902 81 17 23 chr12 11784664 11784836 -132001619 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 1289 274 73 12 chr12 11785164 11785307 -132001148 + L1ME3A LINE L1 -542 4294966887 -6273 2153 77 0 7 chr12 11785307 11785581 -132000874 + AluY SINE Alu 27 298 -13 1289 274 73 12 chr12 11785581 11785860 -132000595 + L1ME3A LINE L1 -409 4294967202 -5958 1760 222 90 13 chr12 11785863 11786332 -132000123 + MLT1D LTR MaLR 1 505 0 601 281 107 20 chr12 11786979 11787369 -131999086 + L1ME3A LINE L1 259 721 -5143 537 307 45 14 chr12 11787440 11787727 -131998728 + L1ME3A LINE L1 847 1142 -5240 1031 179 146 37 chr12 11787746 11788277 -131998178 + L1ME1 LINE L1 5467 6334 0 1891 185 29 43 chr12 11788512 11788967 -131997488 - MLT2B2 LTR ERVL 0 414 1 280 280 103 0 chr12 11789255 11789362 -131997093 + LTR67 LTR ERVL 406 523 -34 311 291 108 27 chr12 11789645 11789793 -131996662 - L1MC4a LINE L1 -1574 6234 6075 466 92 0 15 chr12 11789872 11789937 -131996518 - U6 snRNA snRNA -43 64 1 446 236 50 29 chr12 11789978 11790118 -131996337 - L1MC4a LINE L1 -1879 5929 5787 592 210 49 0 chr12 11790281 11790424 -131996031 - MLT1J2 LTR MaLR -300 150 1 831 273 114 17 chr12 11791711 11792063 -131994392 - MLT1J1 LTR MaLR -21 425 40 1985 117 0 14 chr12 11792262 11792573 -131993882 + AluSg SINE Alu 1 307 0 201 147 0 0 chr12 11795184 11795218 -131991237 + (CACCAT)n Simple_repeat Simple_repeat 5 38 0 2176 73 0 4 chr12 11795905 11796179 -131990276 + AluY SINE Alu 25 297 -14 358 290 128 40 chr12 11796400 11796848 -131989607 + L1ME3A LINE L1 1120 1588 -4796 657 293 58 7 chr12 11797166 11797460 -131988995 + L1ME3A LINE L1 5638 5946 -224 2196 189 169 38 chr12 11798065 11798758 -131987697 + LTR48 LTR ERV1 1 784 -3 23 33 0 0 chr12 11798986 11799016 -131987439 + AT_rich Low_complexity Low_complexity 1 30 0 872 318 65 42 chr12 11799115 11800077 -131986378 - ERVL LTR ERVL -4636 1128 70 1531 15 0 46 chr12 11800760 11800956 -131985499 + L1PA4 LINE L1 5968 6154 -1 303 340 75 0 chr12 11801091 11801291 -131985164 + L1ME3A LINE L1 4011 4225 -2157 7586 33 0 0 chr12 11802201 11803681 -131982774 - L1PA3 LINE L1 0 6155 4676 13055 28 2 0 chr12 11803681 11805245 -131981210 + L1PA3 LINE L1 3085 4651 -1495 444 326 83 37 chr12 11805245 11805548 -131980907 + L1ME3A LINE L1 4302 4590 -1792 1688 168 11 3 chr12 11805548 11805833 -131980622 + AluJb SINE Alu 1 287 -25 444 326 83 37 chr12 11805833 11806434 -131980021 + L1ME3A LINE L1 4590 5368 -1014 1999 160 0 10 chr12 11807545 11807858 -131978597 + AluSx SINE Alu 3 312 0 3451 225 103 13 chr12 11807926 11809147 -131977308 + L1PBa LINE L1 8 1482 -5381 5380 138 71 10 chr12 11809189 11810383 -131976072 - L1 LINE L1 -3645 3920 2664 820 274 21 12 chr12 11810395 11810734 -131975721 - L1M4 LINE L1 -1229 4917 4576 1588 185 3 18 chr12 11810924 11811210 -131975245 + AluJo SINE Alu 1 282 -30 394 316 53 38 chr12 11811328 11811537 -131974918 - MIR SINE MIR -50 212 1 207 167 0 0 chr12 11811941 11811977 -131974478 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 49 0 0 chr12 11812915 11812956 -131973499 + AT_rich Low_complexity Low_complexity 1 41 0 483 279 104 28 chr12 11813115 11813430 -131973025 + L1ME3A LINE L1 5735 6090 -320 1697 177 3 3 chr12 11813966 11814260 -131972195 - AluJb SINE Alu -18 294 1 622 218 78 0 chr12 11816130 11816272 -131970183 - AluJo SINE Alu -159 153 1 604 293 102 3 chr12 11816520 11816834 -131969621 + L1ME3A LINE L1 5618 5962 -208 32 0 0 0 chr12 11817824 11817856 -131968599 + AT_rich Low_complexity Low_complexity 1 32 0 216 67 0 0 chr12 11819823 11819853 -131966602 + (TG)n Simple_repeat Simple_repeat 1 30 0 315 308 45 38 chr12 11820953 11821086 -131965369 + L2 LINE L2 3180 3313 0 1376 334 56 46 chr12 11822308 11822818 -131963637 - HERVL LTR ERVL -2442 3212 2709 1574 194 0 0 chr12 11822818 11823102 -131963353 - AluJb SINE Alu -26 286 3 1376 334 56 46 chr12 11823102 11823661 -131962794 - HERVL LTR ERVL -2945 2709 2132 1603 184 31 3 chr12 11823758 11824046 -131962409 + AluJo SINE Alu 1 296 -16 312 233 116 79 chr12 11824162 11824212 -131962243 - MIR SINE MIR -62 200 153 1952 136 3 3 chr12 11824212 11824507 -131961948 - AluSx SINE Alu -14 298 4 312 233 116 79 chr12 11824507 11824645 -131961810 - MIR SINE MIR -109 153 5 2506 48 0 16 chr12 11824843 11825158 -131961297 - AluY SINE Alu -1 310 1 198 118 0 0 chr12 11825343 11825377 -131961078 + (TG)n Simple_repeat Simple_repeat 2 35 0 473 227 27 17 chr12 11826385 11826542 -131959913 + L1ME3A LINE L1 5678 5832 -338 26 30 0 0 chr12 11827069 11827102 -131959353 + AT_rich Low_complexity Low_complexity 1 33 0 2088 126 0 0 chr12 11827846 11828139 -131958316 + AluSq SINE Alu 2 294 -19 274 243 134 50 chr12 11829138 11829377 -131957078 + L1MEd LINE L1 917 1175 -4944 781 277 81 6 chr12 11829608 11829940 -131956515 + L1ME3 LINE L1 5600 5956 -214 240 288 25 12 chr12 11830047 11830127 -131956328 + L1ME3 LINE L1 6001 6081 -81 219 271 0 0 chr12 11830873 11830921 -131955534 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 1545 255 51 16 chr12 11832239 11832690 -131953765 + L1ME LINE L1 6 472 -5598 14518 178 13 19 chr12 11833415 11833964 -131952491 - L1MA2 LINE L1 0 7723 7173 2339 75 0 7 chr12 11833964 11834271 -131952184 - AluSc SINE Alu -4 305 1 14518 178 13 19 chr12 11834271 11836536 -131949919 - L1MA2 LINE L1 -550 7173 4928 233 29 0 29 chr12 11836536 11836571 -131949884 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 14518 178 13 19 chr12 11836571 11838321 -131948134 - L1MA2 LINE L1 -2795 4928 3170 6238 122 30 60 chr12 11838321 11844614 -131941841 - L1PA7 LINE L1 -3 6151 12 2653 122 23 54 chr12 11844641 11845157 -131941298 - L1MA2 LINE L1 -4402 3163 2664 952 246 29 20 chr12 11845166 11845508 -131940947 - L1M4 LINE L1 -1226 4920 4576 1286 207 41 4 chr12 11845689 11845960 -131940495 + AluJo SINE Alu 1 281 -31 332 331 63 17 chr12 11846110 11846285 -131940170 - MIR SINE MIR -79 183 1 1858 137 3 42 chr12 11846751 11847064 -131939391 + AluSx SINE Alu 1 301 -11 25 31 0 0 chr12 11847487 11847519 -131938936 + AT_rich Low_complexity Low_complexity 1 32 0 183 42 0 0 chr12 11849246 11849270 -131937185 + (CA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr12 11850225 11850249 -131936206 + AT_rich Low_complexity Low_complexity 1 24 0 602 304 25 28 chr12 11850489 11850775 -131935680 - L1ME3 LINE L1 -204 5958 5674 263 307 18 18 chr12 11851089 11851252 -131935203 - L1MEc LINE L1 -4811 1499 1337 382 295 86 30 chr12 11851352 11851586 -131934869 - L1MEc LINE L1 -4949 1170 924 22 0 0 0 chr12 11852605 11852627 -131933828 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr12 11853846 11853882 -131932573 + AT_rich Low_complexity Low_complexity 1 36 0 34 96 0 0 chr12 11854265 11854369 -131932086 + AT_rich Low_complexity Low_complexity 1 104 0 287 216 64 32 chr12 11854578 11854592 -131931863 - L1M4 LINE L1 -333 5845 5832 465 255 67 18 chr12 11854592 11854902 -131931553 - L1ME3A LINE L1 -338 5832 5470 24 0 0 0 chr12 11854903 11854927 -131931528 + AT_rich Low_complexity Low_complexity 1 24 0 1693 148 10 36 chr12 11854930 11855234 -131931221 + AluSx SINE Alu 1 296 -16 24 0 0 0 chr12 11855579 11855603 -131930852 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr12 11856548 11856583 -131929872 + AT_rich Low_complexity Low_complexity 1 35 0 223 308 105 47 chr12 11856775 11856947 -131929508 + MIR SINE MIR 2 183 -79 1074 163 10 39 chr12 11857085 11857288 -131929167 - AluJo SINE Alu -4 308 112 21 57 0 0 chr12 11858052 11858087 -131928368 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr12 11858211 11858245 -131928210 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr12 11859027 11859052 -131927403 + AT_rich Low_complexity Low_complexity 1 25 0 638 288 97 7 chr12 11859304 11859613 -131926842 - L1ME3 LINE L1 -206 6025 5689 443 324 108 47 chr12 11859837 11860217 -131926238 - L1ME3 LINE L1 -4723 1673 1271 266 280 51 0 chr12 11861329 11861425 -131925030 - L1M4 LINE L1 -599 5571 5469 1369 334 70 45 chr12 11863252 11863824 -131922631 - HERVL LTR ERVL -2366 3288 2732 1503 189 48 0 chr12 11863824 11864094 -131922361 - AluJb SINE Alu -27 285 3 1369 334 70 45 chr12 11864094 11864760 -131921695 - HERVL LTR ERVL -2922 2732 2019 1616 192 31 0 chr12 11864767 11865059 -131921396 + AluJo SINE Alu 1 301 -11 1687 175 3 3 chr12 11865226 11865517 -131920938 - AluSx SINE Alu -9 303 13 304 293 48 54 chr12 11865517 11865664 -131920791 - MIR SINE MIR -112 150 5 212 147 0 0 chr12 11866029 11866063 -131920392 + (TG)n Simple_repeat Simple_repeat 2 35 0 1068 50 47 285 chr12 11866972 11867270 -131919185 + AluY SINE Alu 80 306 -5 1912 148 3 0 chr12 11867947 11868230 -131918225 + AluSq SINE Alu 1 284 -29 183 80 0 0 chr12 11868359 11868384 -131918071 + (CAT)n Simple_repeat Simple_repeat 1 25 0 253 215 136 63 chr12 11869286 11869477 -131916978 + L1MEd LINE L1 944 1148 -4971 556 298 76 9 chr12 11870055 11870371 -131916084 + L1ME3 LINE L1 5620 5956 -206 22 0 0 0 chr12 11870622 11870644 -131915811 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 11871417 11871443 -131915012 + AT_rich Low_complexity Low_complexity 1 26 0 3238 128 14 8 chr12 11871481 11871989 -131914466 + MER9 LTR ERVK 1 511 0 306 0 0 0 chr12 11873872 11873906 -131912549 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 21 0 0 0 chr12 11874253 11874274 -131912181 + AT_rich Low_complexity Low_complexity 1 21 0 14178 184 11 24 chr12 11875251 11877462 -131908993 - L1MA2 LINE L1 -477 7246 5097 2452 78 0 0 chr12 11877462 11877770 -131908685 + AluY SINE Alu 1 308 -3 14178 184 11 24 chr12 11877770 11879672 -131906783 - L1MA2 LINE L1 -2626 5097 3173 2540 62 15 0 chr12 11879672 11879997 -131906458 - L1PA7 LINE L1 -4 6150 5821 310 223 62 69 chr12 11880001 11880131 -131906324 - MIR SINE MIR -126 136 8 189 178 0 0 chr12 11880544 11880589 -131905866 + (TATG)n Simple_repeat Simple_repeat 1 45 0 1575 216 0 7 chr12 11881738 11882039 -131904416 - AluJb SINE Alu -13 299 1 22 0 0 0 chr12 11882243 11882265 -131904190 + AT_rich Low_complexity Low_complexity 1 22 0 2235 65 7 0 chr12 11883607 11883909 -131902546 + AluY SINE Alu 4 307 0 379 270 162 27 chr12 11884345 11884790 -131901665 + L1MEd LINE L1 934 1468 -4842 27 73 0 0 chr12 11884839 11884894 -131901561 + AT_rich Low_complexity Low_complexity 1 55 0 1134 208 114 0 chr12 11884910 11885155 -131901300 - AluJo SINE Alu -39 273 1 605 301 95 0 chr12 11885410 11885716 -131900739 + L1ME3A LINE L1 5628 5962 -208 351 0 0 0 chr12 11886382 11886421 -131900034 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1774 102 0 4 chr12 11886423 11886659 -131899796 - AluSc SINE Alu -32 277 43 27 0 0 0 chr12 11887056 11887083 -131899372 + AT_rich Low_complexity Low_complexity 1 27 0 888 200 33 83 chr12 11887920 11888220 -131898235 + LTR12 LTR ERV1 1 285 -429 244 214 34 22 chr12 11888221 11888310 -131898145 + LTR30 LTR ERV1 553 642 -80 627 151 0 2 chr12 11888313 11888428 -131898027 + LTR12 LTR ERV1 175 714 0 250 307 0 61 chr12 11889843 11889957 -131896498 + G-rich Low_complexity Low_complexity 1 107 0 22 56 0 0 chr12 11891223 11891259 -131895196 + AT_rich Low_complexity Low_complexity 1 36 0 240 35 0 0 chr12 11891460 11891489 -131894966 + (TC)n Simple_repeat Simple_repeat 2 30 0 440 292 43 43 chr12 11894370 11894531 -131891924 + L2 LINE L2 3153 3313 0 308 254 9 140 chr12 11895676 11895790 -131890665 + MER45 DNA AcHobo 1 99 -1482 874 328 82 44 chr12 11895790 11897031 -131889424 - ERVL LTR ERVL -1900 3096 2015 1454 230 10 0 chr12 11897043 11897339 -131889116 + AluJo SINE Alu 11 309 -3 2323 97 3 3 chr12 11897354 11897662 -131888793 + AluSx SINE Alu 1 308 -4 312 356 41 26 chr12 11897694 11897961 -131888494 - ERVL LTR ERVL -3720 2044 1774 681 310 176 3 chr12 11898054 11898383 -131888072 + L2 LINE L2 1814 2199 -1115 203 211 19 0 chr12 11898432 11898484 -131887971 + (TA)n Simple_repeat Simple_repeat 1 53 0 234 182 80 68 chr12 11898799 11898887 -131887568 - L1M4 LINE L1 -1116 5030 4942 2125 309 78 9 chr12 11898890 11899657 -131886798 + L2 LINE L2 2157 2976 -338 15037 220 25 10 chr12 11899728 11899759 -131886696 - L1P4 LINE L1 -574 6243 6214 1735 158 0 0 chr12 11899759 11900038 -131886417 - L1PA15 LINE L1 -5 6160 5882 15037 220 25 10 chr12 11900038 11900096 -131886359 - L1P4 LINE L1 -603 6214 6158 279 0 0 0 chr12 11900096 11900127 -131886328 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 15037 220 25 10 chr12 11900127 11903940 -131882515 - L1P4 LINE L1 -659 6158 2306 3895 225 7 11 chr12 11903980 11904811 -131881644 - L1P4 LINE L1 -4764 2023 1196 776 271 50 21 chr12 11904802 11905182 -131881273 - L1M4 LINE L1 -1180 4966 4576 * 215 294 61 75 chr12 11905436 11905664 -131880791 - MIR SINE MIR -32 230 6 23 33 0 0 chr12 11905739 11905769 -131880686 + AT_rich Low_complexity Low_complexity 1 30 0 33 0 0 0 chr12 11905852 11905885 -131880570 + AT_rich Low_complexity Low_complexity 1 33 0 31 76 0 0 chr12 11907206 11907272 -131879183 + AT_rich Low_complexity Low_complexity 1 66 0 467 257 106 32 chr12 11907314 11907610 -131878845 + L1ME3A LINE L1 5512 5845 -333 2231 100 3 7 chr12 11908162 11908472 -131877983 + AluSq SINE Alu 1 309 -4 24 0 0 0 chr12 11908478 11908502 -131877953 + AT_rich Low_complexity Low_complexity 1 24 0 2006 131 0 7 chr12 11908928 11909231 -131877224 + AluSx SINE Alu 3 303 0 1849 226 60 93 chr12 11909531 11910345 -131876110 + LTR1B LTR ERV1 1 787 -39 1214 118 21 0 chr12 11910920 11911106 -131875349 - AluSg/x SINE Alu -3 309 120 261 0 0 0 chr12 11911374 11911403 -131875052 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr12 11911673 11911703 -131874752 + AT_rich Low_complexity Low_complexity 1 30 0 2498 61 0 6 chr12 11911881 11912194 -131874261 - AluY SINE Alu 0 311 1 192 158 0 0 chr12 11912991 11913029 -131873426 + (TG)n Simple_repeat Simple_repeat 2 39 0 276 296 45 85 chr12 11915875 11915958 -131870497 + L2 LINE L2 3145 3219 -94 2378 66 0 3 chr12 11915958 11916262 -131870193 + AluY SINE Alu 1 303 -8 276 296 45 85 chr12 11916262 11916354 -131870101 + L2 LINE L2 3219 3313 0 24 0 0 0 chr12 11916786 11916810 -131869645 + AT_rich Low_complexity Low_complexity 1 24 0 264 333 14 0 chr12 11917532 11917604 -131868851 + MER45 DNA AcHobo 1 73 -967 232 320 62 0 chr12 11917658 11917755 -131868700 + L2 LINE L2 2009 2111 -1203 1151 314 76 42 chr12 11917771 11918707 -131867748 - HERVL LTR ERVL -2353 3301 2334 729 312 173 3 chr12 11918890 11919220 -131867235 + L2 LINE L2 1814 2199 -1115 230 169 0 84 chr12 11919493 11919564 -131866891 - L1M4 LINE L1 -1140 5006 4942 2270 296 65 10 chr12 11919565 11920424 -131866031 + L2 LINE L2 2156 3068 -245 15359 221 29 14 chr12 11920452 11924251 -131862204 - L1PA15 LINE L1 0 6816 2884 1615 196 0 29 chr12 11924251 11924567 -131861888 + AluJb SINE Alu 1 307 -5 15359 221 29 14 chr12 11924567 11926283 -131860172 - L1PA15 LINE L1 -3932 2884 1196 736 259 45 37 chr12 11926274 11926653 -131859802 - L1M4 LINE L1 -1180 4966 4585 * 302 326 76 12 chr12 11926956 11927128 -131859327 - MIR SINE MIR -79 183 1 22 0 0 0 chr12 11928467 11928489 -131857966 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr12 11928574 11928625 -131857830 + AT_rich Low_complexity Low_complexity 1 51 0 423 274 34 15 chr12 11928801 11928950 -131857505 + L1ME1 LINE L1 5679 5837 -333 27 62 0 0 chr12 11929353 11929401 -131857054 + AT_rich Low_complexity Low_complexity 1 48 0 16798 191 33 10 chr12 11929580 11932659 -131853796 + L1P4 LINE L1 1690 4934 -2665 7299 101 7 18 chr12 11932659 11933742 -131852713 + MER11C LTR ERVK 1 1071 0 16798 191 33 10 chr12 11933742 11935783 -131850672 + L1P4 LINE L1 4934 6926 -673 1697 268 46 2 chr12 11935797 11936323 -131850132 + L1PBa LINE L1 6 554 -6309 2166 208 121 8 chr12 11936333 11936839 -131849616 + L1PBa LINE L1 595 1157 -5706 3209 181 7 3 chr12 11936868 11937452 -131849003 + L1PBa LINE L1 1339 1924 -4939 43 0 0 0 chr12 11937452 11937495 -131848960 + AT_rich Low_complexity Low_complexity 1 43 0 1117 184 0 93 chr12 11939015 11939347 -131847108 - L1MA7 LINE L1 0 6291 5991 373 305 84 57 chr12 11941292 11941695 -131844760 - L1M4 LINE L1 -1890 4256 3843 269 237 17 0 chr12 11941696 11941755 -131844700 + HsTC2 DNA Tc2 1839 1898 0 189 107 0 0 chr12 11941767 11941795 -131844660 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 261 0 0 0 chr12 11941794 11941823 -131844632 + (GA)n Simple_repeat Simple_repeat 2 30 0 747 205 80 35 chr12 11942144 11942344 -131844111 + MLT1B LTR MaLR 1 209 -181 625 220 7 110 chr12 11942345 11942627 -131843828 + L1ME1 LINE L1 5905 6157 -9 29 47 0 0 chr12 11943648 11943691 -131842764 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr12 11944547 11944570 -131841885 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 11945015 11945036 -131841419 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr12 11945357 11945384 -131841071 + AT_rich Low_complexity Low_complexity 1 27 0 329 306 8 0 chr12 11947085 11947206 -131839249 + L1MC/D LINE L1 5699 5820 -1988 243 180 0 20 chr12 11952137 11952187 -131834268 - MLT1B LTR MaLR -318 72 24 522 319 43 33 chr12 11952258 11952559 -131833896 + L2 LINE L2 2481 2784 -530 197 279 48 58 chr12 11953035 11953139 -131833316 - MIR SINE MIR -46 216 114 1045 156 11 6 chr12 11953784 11953963 -131832492 - MER61E LTR ERV1 -51 518 339 3861 73 0 2 chr12 11953969 11954503 -131831952 + L1P LINE L1 3096 3628 -2518 397 200 149 70 chr12 11954506 11954721 -131831734 + MLT1B LTR MaLR 330 561 -6 2484 44 27 0 chr12 11954741 11955037 -131831418 + AluY SINE Alu 1 304 -7 228 250 140 0 chr12 11955193 11955293 -131831162 + L1M4 LINE L1 2173 2286 -3860 2203 107 0 10 chr12 11955599 11955899 -131830556 + AluSq SINE Alu 1 297 -16 2823 13 0 0 chr12 11955900 11956209 -131830246 + AluYb8 SINE Alu 1 309 -9 339 289 109 39 chr12 11956217 11956501 -131829954 + L1M4 LINE L1 2428 2731 -3415 289 333 60 55 chr12 11956831 11956962 -131829493 - MIR SINE MIR -6 256 122 1683 172 3 17 chr12 11956962 11957264 -131829191 + AluJb SINE Alu 5 302 -10 289 333 60 55 chr12 11957264 11957333 -131829122 - MIR SINE MIR -140 122 55 534 330 158 35 chr12 11957365 11957382 -131829073 + L1M4 LINE L1 3141 3155 -2991 228 67 0 0 chr12 11957382 11957412 -131829043 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 534 330 158 35 chr12 11957412 11958493 -131827962 + L1M4 LINE L1 3155 4375 -1771 254 292 45 26 chr12 11958657 11958811 -131827644 + L1M4 LINE L1 4564 4720 -1426 1322 210 39 7 chr12 11958845 11959131 -131827324 + AluJb SINE Alu 12 306 -6 27 73 0 0 chr12 11960147 11960202 -131826253 + AT_rich Low_complexity Low_complexity 1 55 0 913 165 30 198 chr12 11960542 11960646 -131825809 - MSTB2 LTR MaLR 0 432 312 2465 96 14 6 chr12 11960646 11961002 -131825453 - L1PA10 LINE L1 -12 6156 5798 913 165 30 198 chr12 11961002 11961250 -131825205 - MSTB2 LTR MaLR -120 312 160 21 0 0 0 chr12 11961669 11961690 -131824765 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 11961720 11961744 -131824711 + AT_rich Low_complexity Low_complexity 1 24 0 266 260 0 13 chr12 11961883 11961960 -131824495 + (TA)n Simple_repeat Simple_repeat 2 77 0 1340 203 78 0 chr12 11961960 11962098 -131824357 - AluJb SINE Alu -36 276 150 362 21 21 0 chr12 11962098 11962145 -131824310 + (TTTTA)n Simple_repeat Simple_repeat 5 52 0 1340 203 78 0 chr12 11962145 11962262 -131824193 - AluJb SINE Alu -162 150 1 2432 122 5 19 chr12 11962690 11963059 -131823396 + THE1B LTR MaLR 1 364 0 618 264 108 31 chr12 11963077 11963384 -131823071 - MER93b LTR ERV1 0 373 63 183 62 31 0 chr12 11963869 11963901 -131822554 + (TTTG)n Simple_repeat Simple_repeat 1 180 0 2217 89 0 0 chr12 11963901 11964181 -131822274 - AluY SINE Alu -1 311 1 2340 172 23 9 chr12 11964319 11964754 -131821701 + MER65A LTR ERV1 5 445 0 287 348 101 19 chr12 11965044 11965360 -131821095 - MLT1I LTR MaLR -7 402 61 773 303 36 24 chr12 11965427 11965561 -131820894 + L1ME3A LINE L1 2219 2350 -3796 2118 86 0 7 chr12 11965561 11965841 -131820614 - AluY SINE Alu -18 293 16 773 303 36 24 chr12 11965841 11966211 -131820244 + L1ME3A LINE L1 2350 2729 -3417 344 252 82 13 chr12 11966234 11966393 -131820062 + L1ME3A LINE L1 2839 3008 -3138 584 274 51 34 chr12 11966743 11967039 -131819416 + L1ME3A LINE L1 5655 5955 -215 389 265 35 30 chr12 11967288 11967488 -131818967 + L1 LINE L1 3598 3798 -2348 21 0 0 0 chr12 11967622 11967643 -131818812 + AT_rich Low_complexity Low_complexity 1 21 0 1135 221 88 17 chr12 11967908 11968316 -131818139 - Zaphod DNA AcHobo -26 4005 3569 1618 122 47 111 chr12 11968409 11968557 -131817898 + MER44D DNA MER2_type 1 157 -2334 788 169 0 0 chr12 11968557 11968687 -131817768 - FLAM_C SINE Alu -2 131 2 1618 122 47 111 chr12 11968687 11968900 -131817555 + MER44D DNA MER2_type 157 609 0 2488 218 48 66 chr12 11971237 11971495 -131814960 - L1MB7 LINE L1 -1 6183 5922 186 43 0 0 chr12 11971495 11971518 -131814937 + (CA)n Simple_repeat Simple_repeat 2 24 0 2488 218 48 66 chr12 11971518 11972174 -131814281 - L1MB7 LINE L1 -262 5922 5270 2126 130 39 30 chr12 11972174 11972535 -131813920 - THE1B LTR MaLR 0 364 1 2488 218 48 66 chr12 11972535 11972680 -131813775 - L1MB7 LINE L1 -914 5270 5124 482 256 36 70 chr12 11973120 11973171 -131813284 - L1ME2 LINE L1 -176 5988 5938 6138 189 18 59 chr12 11973171 11973349 -131813106 - L1PB3 LINE L1 -218 6639 6455 2134 126 3 0 chr12 11973349 11973643 -131812812 - AluSx SINE Alu -17 295 1 6138 189 18 59 chr12 11973643 11973775 -131812680 - L1PB3 LINE L1 -402 6455 6319 236 132 0 0 chr12 11973775 11973813 -131812642 + Alu SINE Alu 257 294 -7 6138 189 18 59 chr12 11973813 11975539 -131810916 - L1PB3 LINE L1 -538 6319 4654 12922 177 21 14 chr12 11975546 11978997 -131807458 - L1PB3 LINE L1 -3537 3312 71 270 280 120 10 chr12 11979001 11979201 -131807254 - L1M4 LINE L1 -2543 3603 3382 22 0 0 0 chr12 11979210 11979232 -131807223 + AT_rich Low_complexity Low_complexity 1 22 0 2321 177 24 31 chr12 11979240 11979698 -131806757 - MSTB2 LTR MaLR -2 455 1 1819 188 5 21 chr12 11979698 11980071 -131806384 - MSTB2-int LTR MaLR 0 1651 1285 978 290 57 44 chr12 11980080 11980539 -131805916 + L2 LINE L2 2828 3292 -21 822 262 5 42 chr12 11981056 11981126 -131805329 - MLT1G LTR MaLR -11 579 508 2016 158 96 20 chr12 11981126 11981524 -131804931 + MSTA LTR MaLR 1 428 0 822 262 5 42 chr12 11981524 11981667 -131804788 - MLT1G LTR MaLR -82 508 374 721 207 45 39 chr12 11981701 11981880 -131804575 + MER3 DNA MER1_type 25 204 -5 243 175 0 0 chr12 11981849 11981889 -131804566 - MER3 DNA MER1_type -126 83 44 * 1162 288 78 6 chr12 11981893 11982237 -131804218 - MLT1G LTR MaLR -217 373 5 2467 71 3 0 chr12 11982251 11982548 -131803907 - AluSx SINE Alu -14 298 1 490 167 88 10 chr12 11985457 11985559 -131800896 + MER20 DNA MER1_type 1 110 -109 322 135 10 104 chr12 11985563 11985659 -131800796 + MER53 DNA DNA 3 89 -100 325 175 0 16 chr12 11985762 11985825 -131800630 + MER53 DNA DNA 126 187 -2 504 206 21 0 chr12 11985830 11985927 -131800528 + MER20 DNA MER1_type 115 213 -6 232 318 0 0 chr12 11986941 11987004 -131799451 - MER96 DNA MER1_type? -112 63 1 * 275 216 135 0 chr12 11987004 11987075 -131799380 + LTR40a LTR ERVL 106 186 -333 265 303 170 41 chr12 11987183 11987401 -131799054 + LTR40a LTR ERVL 237 482 -37 588 339 64 24 chr12 11987766 11988064 -131798391 + HERVL40 LTR ERVL 1057 1366 -4164 234 128 0 0 chr12 11988194 11988233 -131798222 + (TCCCC)n Simple_repeat Simple_repeat 5 43 0 1007 209 0 15 chr12 11988238 11988434 -131798021 - AluJo SINE Alu -117 195 3 282 29 0 0 chr12 11988608 11988643 -131797812 + (CA)n Simple_repeat Simple_repeat 1 35 0 334 289 109 19 chr12 11988655 11988811 -131797644 + HERVL40 LTR ERVL 1448 1617 -3913 2267 263 66 29 chr12 11988931 11989997 -131796458 + L1ME LINE L1 613 1680 -4400 530 204 35 9 chr12 11990055 11990168 -131796287 + MLT1D LTR MaLR 334 449 -56 938 215 74 3 chr12 11990179 11990463 -131795992 + L1ME LINE L1 1791 2094 -3986 931 252 139 25 chr12 11990679 11991032 -131795423 + MLT1D LTR MaLR 12 404 -101 1231 116 0 6 chr12 11991333 11991506 -131794949 + AluSg/x SINE Alu 129 300 -12 520 327 50 29 chr12 11991944 11992225 -131794230 - L2 LINE L2 -530 2784 2498 196 301 82 82 chr12 11996881 11997027 -131789428 + MER5A DNA MER1_type 43 188 -1 413 238 36 87 chr12 11997416 11997693 -131788762 - L1ME4a LINE L1 -171 5950 5688 252 296 102 58 chr12 11998552 11998758 -131787697 + MIR SINE MIR 22 236 -26 193 206 15 15 chr12 11999030 11999098 -131787357 + CT-rich Low_complexity Low_complexity 3 70 0 2175 97 0 0 chr12 11999134 11999454 -131787001 - AluSg SINE Alu 0 322 3 3181 206 35 44 chr12 11999477 12000383 -131786072 - L1PB4 LINE L1 -4 6854 5957 281 313 0 0 chr12 12000715 12000811 -131785644 + Zaphod DNA AcHobo 3935 4030 -1 280 213 100 12 chr12 12000812 12000892 -131785563 - HAL1 LINE L1 -1149 1358 1272 4971 207 35 4 chr12 12001748 12002832 -131783623 + HSMAR2 DNA Mariner 6 1123 -179 341 371 70 18 chr12 12003030 12003302 -131783153 + HERVL40 LTR ERVL 1035 1320 -4210 1220 246 10 13 chr12 12003537 12003838 -131782617 - AluJb SINE Alu -2 300 1 319 266 13 0 chr12 12004183 12004262 -131782193 + HERVL40 LTR ERVL 2050 2129 -3401 1555 261 65 33 chr12 12004502 12005286 -131781169 + L1MDa LINE L1 1261 2069 -4471 201 125 0 50 chr12 12005295 12005335 -131781120 + (CAA)n Simple_repeat Simple_repeat 2 39 0 595 183 180 34 chr12 12005386 12005577 -131780878 + MLT1D LTR MaLR 244 447 -58 890 213 117 35 chr12 12005579 12005954 -131780501 + L1MDa LINE L1 2149 2554 -3986 215 396 43 0 chr12 12006033 12006172 -131780283 - MIR SINE MIR -51 211 67 3807 210 37 50 chr12 12006173 12006380 -131780075 - L1PB4 LINE L1 -1709 5139 4931 1294 101 5 0 chr12 12006380 12006568 -131779887 - L1PA13 LINE L1 -4 6159 5971 3807 210 37 50 chr12 12006568 12007550 -131778905 - L1PB4 LINE L1 -1917 4931 3966 230 194 19 87 chr12 12007563 12007666 -131778789 + L1MC4 LINE L1 6608 6703 -1339 7036 242 39 21 chr12 12007672 12009406 -131777049 - L1PB4 LINE L1 -2897 3951 2138 313 0 0 0 chr12 12009406 12009446 -131777009 - L1PA3 LINE L1 -3 6152 6113 7036 242 39 21 chr12 12009446 12010661 -131775794 - L1PB4 LINE L1 -4710 2138 946 4353 235 41 25 chr12 12010780 12011879 -131774576 + L1M3f LINE L1 8 1123 -4205 326 247 0 0 chr12 12012175 12012252 -131774203 + MER115 DNA AcHobo 605 681 -12 739 250 152 44 chr12 12012264 12012837 -131773618 - HAL1 LINE L1 -1149 1358 724 375 217 83 50 chr12 12013317 12013437 -131773018 + MLT1E2 LTR MaLR 16 139 -487 5094 188 54 27 chr12 12013562 12016513 -131769942 - L1MA4A LINE L1 -11 7354 2720 1993 211 95 4 chr12 12016515 12017041 -131769414 - L1M2 LINE L1 -3962 3247 2674 270 245 21 21 chr12 12017055 12017149 -131769306 - L1 LINE L1 -1011 6554 6461 1972 144 6 5 chr12 12017161 12017508 -131768947 - LTR25 LTR ERV1 -3 782 378 8532 181 23 13 chr12 12017510 12018146 -131768309 - L1 LINE L1 -1353 6212 5584 753 98 0 0 chr12 12018146 12018258 -131768197 + (TCCCC)n Simple_repeat Simple_repeat 2 113 0 8532 181 23 13 chr12 12018258 12019414 -131767041 - L1 LINE L1 -1981 5584 4402 8508 196 12 12 chr12 12019427 12020967 -131765488 - L1 LINE L1 -6007 1558 19 3642 166 20 1 chr12 12020979 12021709 -131764746 - L1M2 LINE L1 -4523 2686 1943 2258 166 43 17 chr12 12021709 12022126 -131764329 - MSTA LTR MaLR 0 428 1 9175 177 26 5 chr12 12022127 12023743 -131762712 - MSTA-int LTR MaLR -1 1637 1 2415 164 37 0 chr12 12023743 12024152 -131762303 - MSTA LTR MaLR 0 428 5 4209 264 113 13 chr12 12024154 12025451 -131761004 - L1M2 LINE L1 -5272 1937 512 952 312 91 74 chr12 12025473 12026461 -131759994 - L1MA4A LINE L1 -6151 1058 1 730 262 83 59 chr12 12026461 12026773 -131759682 - L2 LINE L2 -598 2716 2392 1624 175 22 64 chr12 12026773 12027178 -131759277 + MLT1B LTR MaLR 1 388 -2 730 262 83 59 chr12 12027178 12027239 -131759216 - L2 LINE L2 -922 2392 2334 24 0 0 0 chr12 12029655 12029679 -131756776 + AT_rich Low_complexity Low_complexity 1 24 0 310 276 57 88 chr12 12029743 12030040 -131756415 - L2 LINE L2 -436 2878 2591 22 0 0 0 chr12 12031296 12031318 -131755137 + AT_rich Low_complexity Low_complexity 1 22 0 331 328 15 23 chr12 12032028 12032159 -131754296 - MER5A DNA MER1_type -6 183 54 216 323 40 57 chr12 12032053 12032177 -131754278 + MER5A DNA MER1_type 43 164 -25 * 289 254 24 56 chr12 12032769 12032895 -131753560 - L1MC/D LINE L1 -1988 5820 5699 783 149 26 32 chr12 12034133 12034287 -131752168 + MLT1A1-int LTR MaLR 1583 1735 0 738 236 80 125 chr12 12034287 12034702 -131751753 + MLT1A1 LTR MaLR 1 396 0 21 71 0 0 chr12 12034728 12034770 -131751685 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr12 12034870 12034901 -131751554 + AT_rich Low_complexity Low_complexity 1 31 0 4938 248 107 35 chr12 12035339 12036715 -131749740 + L1MDa LINE L1 19 1717 -4823 1327 199 23 84 chr12 12036715 12037108 -131749347 - MLT1A2 LTR MaLR -2 372 4 4938 248 107 35 chr12 12037108 12038016 -131748439 + L1MDa LINE L1 1717 2558 -3982 22 99 0 0 chr12 12038096 12038167 -131748288 + AT_rich Low_complexity Low_complexity 1 71 0 2260 150 58 27 chr12 12038276 12038399 -131748056 + MSTB LTR MaLR 1 119 -307 1225 146 75 0 chr12 12038399 12038612 -131747843 - MER30 DNA MER1_type -1 229 1 2260 150 58 27 chr12 12038612 12038860 -131747595 + MSTB LTR MaLR 119 389 -37 2300 91 0 3 chr12 12038860 12039167 -131747288 - AluSc SINE Alu -3 306 1 2260 150 58 27 chr12 12039167 12039207 -131747248 + MSTB LTR MaLR 389 426 0 198 247 56 45 chr12 12039280 12039369 -131747086 + L2 LINE L2 2122 2211 -1103 555 248 89 9 chr12 12039435 12039649 -131746806 - L1MDa LINE L1 -4407 2133 1903 201 74 0 0 chr12 12039810 12039837 -131746618 + (A)n Simple_repeat Simple_repeat 1 27 0 920 10 0 0 chr12 12040129 12040232 -131746223 + L1PA5 LINE L1 6044 6146 -8 243 246 0 0 chr12 12040310 12040367 -131746088 + L1M4 LINE L1 4892 4948 -1198 1972 173 23 45 chr12 12040798 12041283 -131745172 - L1MB8 LINE L1 -10 6168 5695 189 0 0 0 chr12 12041397 12041418 -131745037 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1154 118 70 0 chr12 12041423 12041610 -131744845 - L1PA11 LINE L1 -3 6171 5972 1971 286 19 6 chr12 12041610 12042141 -131744314 - MLT1G LTR MaLR -52 538 1 2545 154 20 18 chr12 12042382 12042836 -131743619 + MER67C LTR ERV1 256 710 0 593 328 59 11 chr12 12042880 12043167 -131743288 + LTR16B LTR ERVL 113 413 -51 22 70 0 0 chr12 12044317 12044360 -131742095 + AT_rich Low_complexity Low_complexity 1 43 0 5706 151 27 6 chr12 12044458 12045555 -131740900 + L1MA5 LINE L1 5182 6298 -2 215 226 0 21 chr12 12045646 12045739 -131740716 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 1176 173 0 28 chr12 12045868 12046082 -131740373 - AluJo SINE Alu -77 235 28 184 245 57 0 chr12 12046088 12046141 -131740314 - L2 LINE L2 -936 2378 2323 191 77 0 51 chr12 12046573 12046612 -131739843 + (TTTTTA)n Simple_repeat Simple_repeat 4 40 0 1484 17 6 11 chr12 12046614 12046793 -131739662 - L1PA2 LINE L1 -7 6148 5971 23 33 0 0 chr12 12047540 12047570 -131738885 + AT_rich Low_complexity Low_complexity 1 30 0 2268 68 7 0 chr12 12048080 12048431 -131738024 + AluY SINE Alu 1 353 0 416 149 0 0 chr12 12048664 12048738 -131737717 - AluS SINE Alu -4 305 232 597 206 99 22 chr12 12048855 12049014 -131737441 - MLT1A1 LTR MaLR -226 139 1 1003 244 44 17 chr12 12049037 12049543 -131736912 - L1MEc LINE L1 -3625 2590 2115 299 238 133 0 chr12 12049557 12049662 -131736793 - L1 LINE L1 -2339 3807 3689 405 70 28 14 chr12 12049744 12049815 -131736640 + (TA)n Simple_repeat Simple_repeat 1 72 0 315 49 0 0 chr12 12049814 12049855 -131736600 + (GA)n Simple_repeat Simple_repeat 2 42 0 * 1721 140 3 46 chr12 12049858 12050143 -131736312 - AluJo SINE Alu -37 275 3 1192 260 133 26 chr12 12050221 12050427 -131736028 - L1 LINE L1 -2984 3162 2979 1368 140 21 49 chr12 12050427 12050670 -131735785 + MER46A DNA MER2_type 1 236 0 1192 260 133 26 chr12 12050670 12051390 -131735065 - L1 LINE L1 -3167 2979 2137 276 271 75 53 chr12 12051717 12051850 -131734605 + MIR SINE MIR 119 254 -8 367 365 13 19 chr12 12051891 12052047 -131734408 + L2 LINE L2 3159 3313 0 24 0 0 0 chr12 12052218 12052242 -131734213 + AT_rich Low_complexity Low_complexity 1 24 0 219 188 0 0 chr12 12054507 12054555 -131731900 + (CA)n Simple_repeat Simple_repeat 1 48 0 283 288 27 14 chr12 12054926 12055072 -131731383 - L1ME LINE L1 -264 5840 5693 241 346 116 46 chr12 12055135 12055462 -131730993 - L2 LINE L2 -48 3224 2875 315 299 78 13 chr12 12055667 12055821 -131730634 - L1ME LINE L1 -2381 5410 5247 504 283 78 91 chr12 12056433 12057006 -131729449 - L1ME LINE L1 -5317 802 237 2522 128 70 26 chr12 12057007 12057507 -131728948 + L1MA5A LINE L1 5759 6280 -17 415 138 161 11 chr12 12057761 12057848 -131728607 + LTR47A LTR ERVL 261 360 -92 326 119 48 0 chr12 12057868 12057952 -131728503 + (TA)n Simple_repeat Simple_repeat 1 88 0 1872 142 9 9 chr12 12057960 12058283 -131728172 + L1PB3 LINE L1 5830 6152 -2 646 160 9 0 chr12 12058298 12058404 -131728051 + LTR47A LTR ERVL 346 452 0 25 51 0 0 chr12 12058706 12058745 -131727710 + AT_rich Low_complexity Low_complexity 1 39 0 1609 141 20 37 chr12 12058745 12059044 -131727411 - L1PA16 LINE L1 -9 6157 5864 227 309 141 13 chr12 12059094 12059392 -131727063 - L1M4 LINE L1 -3103 3043 2708 195 100 0 0 chr12 12059712 12059742 -131726713 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 635 128 32 24 chr12 12059742 12059867 -131726588 - L1MA4A LINE L1 -14 6289 6164 4196 206 35 28 chr12 12060265 12061666 -131724789 - L1MB4 LINE L1 -2 6178 4747 265 114 0 0 chr12 12061666 12061701 -131724754 - U2 snRNA snRNA -153 35 1 4196 206 35 28 chr12 12061701 12061886 -131724569 - L1MB4 LINE L1 -1433 4747 4565 454 267 37 15 chr12 12062517 12062652 -131723803 - L2 LINE L2 0 3313 3176 270 241 0 17 chr12 12062653 12062711 -131723744 - MLT1K LTR MaLR -346 242 186 627 51 0 0 chr12 12063196 12063275 -131723180 + (TA)n Simple_repeat Simple_repeat 2 80 0 1329 252 42 19 chr12 12063289 12063714 -131722741 - L1 LINE L1 -1422 4724 4290 22 0 0 0 chr12 12063963 12063985 -131722470 + AT_rich Low_complexity Low_complexity 1 22 0 1154 237 41 36 chr12 12064241 12064604 -131721851 - MLT1A1 LTR MaLR 0 365 1 437 324 109 17 chr12 12064740 12064978 -131721477 - MIR SINE MIR 0 262 3 247 89 0 22 chr12 12065245 12065290 -131721165 + L1MA4 LINE L1 6248 6291 -9 373 235 9 160 chr12 12065476 12065573 -131720882 - L2 LINE L2 -2728 586 537 788 196 0 0 chr12 12065573 12065706 -131720749 + FLAM_C SINE Alu 1 133 0 373 235 9 160 chr12 12065706 12065821 -131720634 - L2 LINE L2 -2777 537 406 448 284 95 5 chr12 12065875 12066065 -131720390 + Charlie4a DNA MER1_type 47 253 -255 446 224 89 42 chr12 12066073 12066287 -131720168 + Charlie4a DNA MER1_type 283 506 -2 276 336 82 0 chr12 12066298 12066420 -131720035 - L2 LINE L2 -2967 347 216 526 303 29 62 chr12 12068201 12068475 -131717980 - ERVL LTR ERVL -4328 1436 1172 25 0 0 0 chr12 12070963 12070988 -131715467 + AT_rich Low_complexity Low_complexity 1 25 0 829 127 8 0 chr12 12070988 12071106 -131715349 - AluSg/x SINE Alu -26 284 166 23 0 0 0 chr12 12073827 12073850 -131712605 + AT_rich Low_complexity Low_complexity 1 23 0 1947 123 31 0 chr12 12074661 12074954 -131711501 + AluSp SINE Alu 1 302 -11 607 169 140 0 chr12 12075384 12075520 -131710935 - L1MA10 LINE L1 -2 6332 6178 475 154 44 11 chr12 12075975 12076066 -131710389 - MER53 DNA DNA -95 94 1 204 135 0 0 chr12 12077570 12077607 -131708848 + (TCTCTG)n Simple_repeat Simple_repeat 6 42 0 383 301 60 20 chr12 12078328 12078527 -131707928 + L1M4 LINE L1 2537 2743 -3403 1733 167 7 0 chr12 12079540 12079822 -131706633 + AluJb SINE Alu 1 284 -28 311 352 117 5 chr12 12081421 12081617 -131704838 + L3 LINE CR1 1141 1358 -219 63 57 0 0 chr12 12081625 12081730 -131704725 + AT_rich Low_complexity Low_complexity 1 105 0 303 296 23 89 chr12 12082652 12082834 -131703621 + MLT1J LTR MaLR 247 527 -88 292 176 0 135 chr12 12083121 12083231 -131703224 - AluJ/FRAM SINE Alu 0 318 219 * 727 184 22 7 chr12 12083216 12083352 -131703103 + MLT1A1 LTR MaLR 5 142 -223 184 346 70 77 chr12 12083390 12083662 -131702793 - L2 LINE L2 -195 3077 2808 271 340 46 31 chr12 12084122 12084316 -131702139 - L2 LINE L2 -1025 2289 2093 595 287 97 36 chr12 12084598 12084845 -131701610 + MIR SINE MIR 1 262 0 5109 134 23 58 chr12 12085096 12086051 -131700404 + Tigger3b DNA MER2_type 3 924 -307 2081 122 54 20 chr12 12086081 12086433 -131700022 + THE1C LTR MaLR 12 375 0 1751 152 47 3 chr12 12086433 12086729 -131699726 + Tigger3b DNA MER2_type 923 1231 0 21 0 0 0 chr12 12087140 12087161 -131699294 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 12087286 12087308 -131699147 + AT_rich Low_complexity Low_complexity 1 22 0 408 220 37 142 chr12 12087579 12087874 -131698581 + L1ME3 LINE L1 5677 5940 -230 31 76 0 0 chr12 12089431 12089497 -131696958 + AT_rich Low_complexity Low_complexity 1 66 0 494 257 106 32 chr12 12089539 12089835 -131696620 + L1ME3A LINE L1 5512 5845 -333 2201 100 3 7 chr12 12090387 12090697 -131695758 + AluSq SINE Alu 1 309 -4 24 0 0 0 chr12 12090703 12090727 -131695728 + AT_rich Low_complexity Low_complexity 1 24 0 2079 130 0 7 chr12 12091153 12091452 -131695003 + AluSx SINE Alu 3 299 -13 26 50 0 0 chr12 12092371 12092411 -131694044 + AT_rich Low_complexity Low_complexity 1 40 0 28 61 0 0 chr12 12092514 12092563 -131693892 + AT_rich Low_complexity Low_complexity 1 49 0 497 254 120 36 chr12 12092580 12092888 -131693567 + L1ME3A LINE L1 5499 5847 -331 216 97 0 0 chr12 12093181 12093212 -131693243 + (T)n Simple_repeat Simple_repeat 1 31 0 292 261 45 0 chr12 12093214 12093302 -131693153 + Charlie7 DNA MER1_type 2170 2261 -351 21 0 0 0 chr12 12093674 12093695 -131692760 + AT_rich Low_complexity Low_complexity 1 21 0 8984 51 3 2 chr12 12093695 12095623 -131690832 - L1PA5 LINE L1 0 6154 4222 1615 183 3 7 chr12 12095892 12096192 -131690263 - AluJo SINE Alu -13 299 1 27 29 0 0 chr12 12096402 12096436 -131690019 + AT_rich Low_complexity Low_complexity 1 34 0 1803 111 0 4 chr12 12097689 12097941 -131688514 - AluSc SINE Alu -17 292 42 31 0 0 0 chr12 12098336 12098367 -131688088 + AT_rich Low_complexity Low_complexity 1 31 0 225 278 0 0 chr12 12099203 12099257 -131687198 + LTR30 LTR ERV1 1 54 -668 821 173 74 189 chr12 12099264 12099893 -131686562 + LTR12 LTR ERV1 69 486 -228 207 100 0 0 chr12 12101008 12101038 -131685417 + (TG)n Simple_repeat Simple_repeat 1 30 0 369 308 39 39 chr12 12102126 12102282 -131684173 + L2 LINE L2 3158 3313 0 1736 96 54 8 chr12 12102579 12102840 -131683615 + AluY SINE Alu 34 306 -5 1612 332 46 36 chr12 12103145 12103599 -131682856 - HERVL LTR ERVL -2498 3156 2708 1479 209 3 0 chr12 12103599 12103882 -131682573 - AluJb SINE Alu -26 286 3 1612 332 46 36 chr12 12103882 12104472 -131681983 - HERVL LTR ERVL -2946 2708 2102 1543 184 38 3 chr12 12104549 12104842 -131681613 + AluJo SINE Alu 1 303 -9 1839 163 3 0 chr12 12105018 12105313 -131681142 - AluSx SINE Alu -16 296 1 218 317 55 41 chr12 12105313 12105458 -131680997 - MIR SINE MIR -111 151 5 24 77 0 0 chr12 12106807 12106859 -131679596 + AT_rich Low_complexity Low_complexity 1 52 0 478 300 90 10 chr12 12106996 12107295 -131679160 + L1ME LINE L1 5483 5823 -347 1031 216 38 29 chr12 12107295 12107591 -131678864 - LTR10B LTR ERV1 0 591 226 22 80 0 0 chr12 12107781 12107831 -131678624 + AT_rich Low_complexity Low_complexity 1 50 0 25 31 0 0 chr12 12108241 12108273 -131678182 + AT_rich Low_complexity Low_complexity 1 32 0 1895 149 7 0 chr12 12109021 12109316 -131677139 + AluSq SINE Alu 2 298 -15 183 80 0 0 chr12 12109427 12109452 -131677003 + (CAT)n Simple_repeat Simple_repeat 1 25 0 384 255 147 22 chr12 12110323 12110701 -131675754 + L1ME3 LINE L1 924 1382 -4910 553 248 133 28 chr12 12111103 12111426 -131675029 + L1ME3 LINE L1 5583 5939 -214 246 288 25 12 chr12 12111535 12111615 -131674840 + L1ME3 LINE L1 5984 6064 -81 22 0 0 0 chr12 12112470 12112492 -131673963 + AT_rich Low_complexity Low_complexity 1 22 0 223 260 39 0 chr12 12114418 12114495 -131671960 + (TA)n Simple_repeat Simple_repeat 1 80 0 182 118 29 0 chr12 12115555 12115589 -131670866 + (TA)n Simple_repeat Simple_repeat 2 36 0 545 291 42 18 chr12 12116038 12116203 -131670252 + LTR38-int LTR ERV1 124 292 -1494 816 170 158 35 chr12 12116911 12117170 -131669285 + LTR36 LTR ERV1 3 293 -318 403 256 40 16 chr12 12117267 12117392 -131669063 + LTR36 LTR ERV1 440 567 -44 436 312 0 7 chr12 12117849 12117987 -131668468 - ERVL LTR ERVL -2557 3207 3071 370 330 17 52 chr12 12118055 12118190 -131668265 - ERVL LTR ERVL -2627 3027 2901 1611 169 18 21 chr12 12118190 12118514 -131667941 + AluSx SINE Alu 2 324 0 370 330 17 52 chr12 12118514 12118610 -131667845 - ERVL LTR ERVL -2753 2901 2803 740 319 95 24 chr12 12118845 12119340 -131667115 - ERVL LTR ERVL -2937 2548 2019 807 228 0 86 chr12 12119347 12119579 -131666876 + AluJo SINE Alu 1 212 -100 1289 204 48 130 chr12 12119590 12119815 -131666640 - LTR36 LTR ERV1 -18 593 351 1915 191 89 17 chr12 12119815 12120286 -131666169 - LTR22 LTR ERVK -4 505 1 1289 204 48 130 chr12 12120286 12120706 -131665749 - LTR36 LTR ERV1 -260 351 1 496 172 0 43 chr12 12120706 12120799 -131665656 + AluJo SINE Alu 203 291 -21 367 267 45 34 chr12 12120917 12121093 -131665362 - MER50 LTR ERV1 -7 727 550 23 33 0 0 chr12 12121312 12121342 -131665113 + GC_rich Low_complexity Low_complexity 1 30 0 549 155 10 10 chr12 12121504 12121601 -131664854 + AluSp/q SINE Alu 195 291 -22 1302 125 0 0 chr12 12121603 12121787 -131664668 + AluSc SINE Alu 119 302 -7 966 316 18 24 chr12 12121788 12122466 -131663989 + L1PA8 LINE L1 5481 6154 -18 574 302 88 3 chr12 12123055 12123373 -131663082 - L1ME3A LINE L1 -208 5962 5618 973 225 131 0 chr12 12123622 12123866 -131662589 + AluJo SINE Alu 1 276 -36 371 337 18 12 chr12 12123975 12124138 -131662317 - HAL1 LINE L1 -954 1553 1390 421 221 106 53 chr12 12124230 12124438 -131662017 - L1MEd LINE L1 -4967 1152 934 1593 203 0 7 chr12 12126402 12126703 -131659752 + AluJo SINE Alu 1 299 -13 4944 53 0 2 chr12 12126979 12127604 -131658851 + L1P LINE L1 4224 4847 -1299 1957 129 46 15 chr12 12127723 12128049 -131658406 - MER9 LTR ERVK -175 336 1 26 0 0 0 chr12 12128087 12128113 -131658342 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 12128886 12128908 -131657547 + AT_rich Low_complexity Low_complexity 1 22 0 548 305 76 6 chr12 12129159 12129474 -131656981 - L1ME3 LINE L1 -206 5939 5603 308 334 104 28 chr12 12129727 12130044 -131656411 - L1ME3 LINE L1 -4762 1548 1208 341 223 118 52 chr12 12130052 12130263 -131656192 - L1ME3 LINE L1 -4971 1148 924 14343 56 2 1 chr12 12130988 12132835 -131653620 + L1P LINE L1 2803 4651 -1495 325 336 73 33 chr12 12132835 12133109 -131653346 + L1M4 LINE L1 4066 4350 -1796 309 290 68 59 chr12 12133120 12133138 -131653317 + L1M4 LINE L1 4481 4497 -1649 1668 175 11 3 chr12 12133138 12133423 -131653032 + AluJb SINE Alu 1 287 -25 309 290 68 59 chr12 12133423 12133625 -131652830 + L1M4 LINE L1 4497 4703 -1443 1828 111 0 4 chr12 12134252 12134504 -131651951 - AluSc SINE Alu -17 292 42 31 0 0 0 chr12 12134899 12134930 -131651525 + AT_rich Low_complexity Low_complexity 1 31 0 1569 184 38 3 chr12 12136273 12136566 -131649889 - AluJo SINE Alu -9 303 1 1467 338 53 38 chr12 12136627 12137233 -131649222 + HERVL LTR ERVL 2121 2716 -3048 1510 209 3 0 chr12 12137233 12137516 -131648939 + AluJb SINE Alu 3 286 -26 1467 338 53 38 chr12 12137516 12138098 -131648357 + HERVL LTR ERVL 2716 3327 -2437 28 0 0 0 chr12 12138982 12139010 -131647445 + AT_rich Low_complexity Low_complexity 1 28 0 1835 168 9 54 chr12 12139397 12139843 -131646612 - L1MC/D LINE L1 -2040 5745 5320 5228 150 18 3 chr12 12139862 12140716 -131645739 - L1MC1 LINE L1 -9 6324 5459 561 261 7 14 chr12 12142124 12142266 -131644189 + MIR SINE MIR 18 158 -104 1539 191 3 10 chr12 12142266 12142560 -131643895 - AluSq SINE Alu -17 296 5 415 363 183 6 chr12 12142717 12143045 -131643410 - L2 LINE L2 -1115 2199 1814 296 332 35 15 chr12 12143117 12143319 -131643136 + HERVL LTR ERVL 1715 1920 -3734 557 203 16 8 chr12 12143360 12143483 -131642972 + MER50 LTR ERV1 3 126 -608 2930 202 9 37 chr12 12143630 12144813 -131641642 - L1 LINE L1 -3240 4325 3173 2472 74 15 0 chr12 12144813 12145138 -131641317 - L1PA7 LINE L1 -4 6150 5821 272 280 53 61 chr12 12145143 12145275 -131641180 - MIR SINE MIR -127 135 5 26 30 0 0 chr12 12146638 12146671 -131639784 + AT_rich Low_complexity Low_complexity 1 33 0 4530 73 16 0 chr12 12146800 12147592 -131638863 - L1PA6 LINE L1 -290 5864 5064 7586 33 0 0 chr12 12148646 12150174 -131636281 - L1PA3 LINE L1 0 6155 4628 1168 48 0 0 chr12 12150174 12150319 -131636136 + L1P LINE L1 4311 4455 -1691 330 157 28 36 chr12 12150441 12150524 -131635931 + L1MC3 LINE L1 6788 6897 -924 2915 197 89 23 chr12 12150530 12151224 -131635231 + L1MC3 LINE L1 7046 7785 0 1299 210 41 4 chr12 12151936 12152207 -131634248 + AluJo SINE Alu 1 281 -31 327 331 63 17 chr12 12152354 12152529 -131633926 - MIR SINE MIR -79 183 1 21 57 0 0 chr12 12152604 12152639 -131633816 + AT_rich Low_complexity Low_complexity 1 35 0 189 178 0 0 chr12 12152959 12153004 -131633451 + (TATG)n Simple_repeat Simple_repeat 1 45 0 217 235 96 96 chr12 12154536 12154672 -131631783 + MIR SINE MIR 5 140 -122 983 114 0 0 chr12 12154674 12154806 -131631649 + AluSq/x SINE Alu 4 135 -178 1348 220 116 11 chr12 12154989 12155344 -131631111 + MLT1D LTR MaLR 114 505 0 481 264 102 27 chr12 12156236 12156552 -131629903 + L1ME3A LINE L1 5499 5854 -320 1643 179 3 10 chr12 12157087 12157383 -131629072 - AluJb SINE Alu -18 294 1 1089 189 0 15 chr12 12157878 12158079 -131628376 - AluJb SINE Alu -103 209 12 21 36 0 0 chr12 12158417 12158445 -131628010 + AT_rich Low_complexity Low_complexity 1 28 0 1082 56 0 7 chr12 12159065 12159207 -131627248 + L1PA3 LINE L1 6015 6155 0 1102 206 42 0 chr12 12159991 12160278 -131626177 + L1M4 LINE L1 3209 3507 -2639 2459 36 3 7 chr12 12160467 12160768 -131625687 - AluY SINE Alu -11 300 1 22 56 0 0 chr12 12160837 12160873 -131625582 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr12 12160964 12160987 -131625468 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr12 12161248 12161298 -131625157 + AT_rich Low_complexity Low_complexity 1 50 0 6855 66 3 2 chr12 12161562 12162837 -131623618 + L1PA5 LINE L1 4877 6154 0 303 340 75 0 chr12 12162974 12163174 -131623281 + L1M4 LINE L1 3775 3989 -2157 8641 136 3 8 chr12 12163666 12164995 -131621460 - L1P3 LINE L1 -5138 1323 1 688 239 62 84 chr12 12165348 12165703 -131620752 + MLT-int LTR MaLR 482 828 -907 2479 216 47 10 chr12 12165708 12166223 -131620232 + MSTD-int LTR MaLR 1202 1735 0 1533 207 94 0 chr12 12166223 12166585 -131619870 + MSTD LTR MaLR 1 396 0 1891 153 7 0 chr12 12166881 12167176 -131619279 - AluSq SINE Alu -15 298 2 25 31 0 0 chr12 12167923 12167955 -131618500 + AT_rich Low_complexity Low_complexity 1 32 0 357 24 0 0 chr12 12168529 12168571 -131617884 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 21 0 0 0 chr12 12168919 12168940 -131617515 + AT_rich Low_complexity Low_complexity 1 21 0 248 280 151 21 chr12 12169558 12169744 -131616711 - MLT1G LTR MaLR -371 219 10 299 181 0 35 chr12 12170829 12170945 -131615510 + (TA)n Simple_repeat Simple_repeat 1 112 0 195 42 0 0 chr12 12170995 12171019 -131615436 + (TA)n Simple_repeat Simple_repeat 2 25 0 380 229 92 23 chr12 12171197 12171328 -131615127 + L2 LINE L2 3174 3313 0 369 308 39 39 chr12 12172019 12172175 -131614280 - L2 LINE L2 0 3313 3158 183 100 0 0 chr12 12173261 12173291 -131613164 + (CA)n Simple_repeat Simple_repeat 1 30 0 6816 46 6 32 chr12 12174022 12175316 -131611139 - L1PA3 LINE L1 0 6155 4888 384 291 130 55 chr12 12175703 12176050 -131610405 + L1MEc LINE L1 1263 1635 -4761 360 219 168 31 chr12 12176277 12176473 -131609982 + L1ME LINE L1 5600 5822 -348 732 126 31 8 chr12 12176612 12176739 -131609716 + MER9 LTR ERVK 382 511 0 1531 264 62 9 chr12 12178386 12178822 -131607633 + L1ME LINE L1 35 493 -5577 27 49 0 0 chr12 12179188 12179229 -131607226 + AT_rich Low_complexity Low_complexity 1 41 0 5439 147 47 28 chr12 12179537 12180714 -131605741 - L1MA2 LINE L1 0 6304 5101 24 0 0 0 chr12 12182337 12182361 -131604094 + AT_rich Low_complexity Low_complexity 1 24 0 1472 189 48 0 chr12 12182365 12182635 -131603820 + AluJb SINE Alu 3 285 -27 458 352 18 40 chr12 12182722 12183049 -131603406 + HERVL40 LTR ERVL 2803 3122 -2532 2940 199 19 11 chr12 12283262 12283909 -131502546 - L1P LINE L1 -798 5348 4697 376 239 23 34 chr12 12283924 12284012 -131502443 + MLT1C LTR MaLR 1 87 -418 1076 181 0 0 chr12 12284012 12284178 -131502277 - AluJo SINE Alu -10 302 137 743 242 113 51 chr12 12284179 12284536 -131501919 + MLT1C LTR MaLR 80 618 -8 380 286 71 14 chr12 12284867 12285007 -131501448 - L2 LINE L2 -206 3066 2919 3604 64 2 7 chr12 12285072 12285522 -131500933 + LTR7 LTR ERV1 1 448 -2 21039 90 58 29 chr12 12285524 12288723 -131497732 + HERVH LTR ERV1 1 3290 -4423 2741 121 16 2 chr12 12288713 12289143 -131497312 + HERVH LTR ERV1 3492 3927 -3786 * 771 236 8 114 chr12 12289686 12290037 -131496418 + MLT1B LTR MaLR 57 370 -20 225 203 0 34 chr12 12290054 12290113 -131496342 - L2 LINE L2 -924 2390 2334 4917 205 25 27 chr12 12290854 12291975 -131494480 + HSMAR2 DNA Mariner 5 1123 -179 353 292 29 15 chr12 12291977 12292114 -131494341 + HERVL40 LTR ERVL 109 247 -5283 326 246 0 0 chr12 12293265 12293326 -131493129 - MER69 DNA AcHobo -97 80 20 327 263 11 40 chr12 12293391 12293566 -131492889 + (CACCC)n Simple_repeat Simple_repeat 4 173 0 180 97 0 0 chr12 12293567 12293598 -131492857 + (C)n Simple_repeat Simple_repeat 1 31 0 332 284 47 31 chr12 12293938 12294065 -131492390 + L2 LINE L2 3181 3309 -4 466 261 134 0 chr12 12294192 12294326 -131492129 + L2 LINE L2 2923 3074 -239 784 142 16 24 chr12 12294414 12294541 -131491914 - AluJo SINE Alu -185 127 2 341 224 224 21 chr12 12294548 12294691 -131491764 + L2 LINE L2 3142 3313 0 22 0 0 0 chr12 12294728 12294750 -131491705 + AT_rich Low_complexity Low_complexity 1 22 0 1667 170 46 0 chr12 12295219 12295501 -131490954 - AluJb SINE Alu -17 295 1 207 0 0 0 chr12 12295555 12295578 -131490877 + (T)n Simple_repeat Simple_repeat 1 23 0 6432 91 51 2 chr12 12296892 12298181 -131488274 - L1PA13 LINE L1 0 6163 4847 4988 166 9 1 chr12 12298181 12299046 -131487409 + L1PA13 LINE L1 3976 4847 -1299 1718 181 10 23 chr12 12299159 12299469 -131486986 - AluJo SINE Alu -6 306 1 2066 137 140 11 chr12 12299876 12300255 -131486200 - MSTA LTR MaLR 0 428 1 435 138 319 0 chr12 12300275 12300369 -131486086 - MER3 DNA MER1_type -57 152 29 3645 140 62 12 chr12 12301204 12301784 -131484671 + MER4B LTR ERV1 1 609 -1 360 298 93 12 chr12 12302634 12302795 -131483660 - MIR SINE MIR 0 262 89 1593 67 19 19 chr12 12303909 12304118 -131482337 - L1PA10 LINE L1 -12 6156 5948 544 130 0 28 chr12 12304828 12304936 -131481519 + (TTTC)n Simple_repeat Simple_repeat 3 107 0 1369 162 113 35 chr12 12305062 12305346 -131481109 + AluJo SINE Alu 1 306 -6 1338 164 0 5 chr12 12305891 12306104 -131480351 + AluJb SINE Alu 85 296 -16 187 308 15 15 chr12 12306106 12306171 -131480284 + MER5A DNA MER1_type 46 110 -79 291 381 34 0 chr12 12306514 12306661 -131479794 + L2 LINE L2 3121 3272 0 194 212 0 0 chr12 12307237 12307270 -131479185 + L2 LINE L2 3271 3303 -10 2061 196 39 61 chr12 12307450 12307961 -131478494 + LTR54 LTR ERV1 8 507 -3 217 200 20 20 chr12 12308005 12308055 -131478400 + MIR SINE MIR 78 127 -81 242 135 0 0 chr12 12308623 12308660 -131477795 - MLT1J LTR MaLR -48 463 427 378 302 48 21 chr12 12308706 12308965 -131477490 - MLT1J LTR MaLR -174 337 33 720 202 0 0 chr12 12309088 12309207 -131477248 - FLAM_A SINE Alu -14 119 1 650 236 16 102 chr12 12310732 12310986 -131475469 + MIR SINE MIR 30 261 -1 3841 156 23 68 chr12 12311000 12311541 -131474914 - L1MB2 LINE L1 -3 6168 5673 1943 151 0 0 chr12 12311541 12311825 -131474630 + AluSx SINE Alu 6 289 -23 3841 156 23 68 chr12 12311825 12312073 -131474382 - L1MB2 LINE L1 -498 5673 5415 252 285 97 35 chr12 12312483 12312627 -131473828 + L2 LINE L2 2487 2639 -675 999 252 27 17 chr12 12312976 12313274 -131473181 - AluJb SINE Alu -1 301 1 4569 79 35 36 chr12 12313471 12314128 -131472327 - SVA Other Other 0 1386 731 375 268 103 56 chr12 12315082 12315295 -131471160 + MIR SINE MIR 6 228 -34 773 350 91 20 chr12 12315363 12316023 -131470432 + L2 LINE L2 1395 2101 -1213 1307 242 39 76 chr12 12316204 12316562 -131469893 - L1MDa LINE L1 -3930 2610 2283 1638 52 0 0 chr12 12316562 12316755 -131469700 + L1PA4 LINE L1 5963 6155 0 1307 242 39 76 chr12 12316755 12317015 -131469440 - L1MDa LINE L1 -4257 2283 2015 3779 182 152 17 chr12 12317040 12318110 -131468345 - L1P LINE L1 -1499 4647 3449 207 0 0 0 chr12 12318238 12318261 -131468194 + (CA)n Simple_repeat Simple_repeat 1 23 0 342 330 9 0 chr12 12318668 12318780 -131467675 + MIR3 SINE MIR 85 197 -11 360 315 12 42 chr12 12318802 12318967 -131467488 + MIR3 SINE MIR 42 201 -7 204 355 0 0 chr12 12319069 12319145 -131467310 + CT-rich Low_complexity Low_complexity 3 78 0 234 270 195 50 chr12 12320622 12320781 -131465674 + MIR SINE MIR 8 189 -73 205 294 0 0 chr12 12321084 12321135 -131465320 + C-rich Low_complexity Low_complexity 1 51 0 359 206 11 22 chr12 12321141 12321233 -131465222 - L1 LINE L1 -1172 4974 4884 1444 187 70 52 chr12 12321233 12321343 -131465112 + MSTB LTR MaLR 1 108 -318 2448 120 28 14 chr12 12321343 12321702 -131464753 + THE1B LTR MaLR 1 364 0 1444 187 70 52 chr12 12321702 12321992 -131464463 + MSTB LTR MaLR 108 408 -18 2618 32 0 0 chr12 12322195 12322505 -131463950 - L1P LINE L1 -1001 5145 4836 417 223 29 29 chr12 12322504 12322643 -131463812 - L1ME LINE L1 -606 5556 5418 * 431 246 41 16 chr12 12323169 12323291 -131463164 + MER65B LTR ERV1 1 125 -406 313 272 92 95 chr12 12323297 12323665 -131462790 + MER65A LTR ERV1 79 445 0 269 270 56 71 chr12 12323777 12323903 -131462552 - L2 LINE L2 -5 3267 3144 560 53 13 0 chr12 12324271 12324347 -131462108 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 1756 124 0 4 chr12 12324348 12324590 -131461865 - AluSx SINE Alu -39 273 33 517 205 114 18 chr12 12324590 12324756 -131461699 - FRAM SINE Alu 0 176 1 209 250 0 0 chr12 12325353 12325397 -131461058 + C-rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr12 12325570 12325602 -131460853 + GC_rich Low_complexity Low_complexity 1 32 0 2415 72 10 3 chr12 12326130 12326437 -131460018 - AluSc SINE Alu 0 309 1 597 144 34 34 chr12 12326772 12326890 -131459565 + FLAM_C SINE Alu 7 124 -19 311 265 83 38 chr12 12328106 12328238 -131458217 - MIR SINE MIR -118 144 7 28 0 0 0 chr12 12329342 12329370 -131457085 + AT_rich Low_complexity Low_complexity 1 28 0 1806 146 44 0 chr12 12329373 12329648 -131456807 - AluJb SINE Alu -25 287 1 2857 124 7 19 chr12 12329983 12330409 -131456046 - MSTC LTR MaLR -5 423 3 484 291 56 80 chr12 12330578 12330880 -131455575 + L1ME3A LINE L1 5665 5936 -234 1731 178 31 14 chr12 12331118 12331472 -131454983 + MLT1A1 LTR MaLR 1 360 -5 2088 111 7 0 chr12 12331507 12331811 -131454644 - AluSx SINE Alu 0 306 1 937 196 0 0 chr12 12331820 12331973 -131454482 - FRAM SINE Alu -23 153 1 315 71 0 0 chr12 12332954 12332996 -131453459 + (TAAAA)n Simple_repeat Simple_repeat 1 42 0 621 284 36 40 chr12 12334269 12334519 -131451936 + MIR SINE MIR 14 262 0 1521 111 12 83 chr12 12334940 12335192 -131451263 + AluSx SINE Alu 2 235 -77 1903 156 7 7 chr12 12335234 12335536 -131450919 + AluSx SINE Alu 5 306 -6 2025 103 39 4 chr12 12335600 12335881 -131450574 + AluSx SINE Alu 1 291 -21 189 107 0 0 chr12 12337067 12337095 -131449360 + (T)n Simple_repeat Simple_repeat 1 28 0 183 301 119 34 chr12 12337326 12337562 -131448893 + L2 LINE L2 2950 3205 -108 735 229 62 65 chr12 12337632 12337938 -131448517 + L1MC5 LINE L1 7613 7917 -44 307 255 53 0 chr12 12338265 12338359 -131448096 - HsTC2 DNA Tc2 -220 1678 1580 1865 131 44 0 chr12 12339074 12339349 -131447106 + AluSx SINE Alu 1 287 -25 7118 46 12 2 chr12 12339457 12340859 -131445596 + L1PA7 LINE L1 4767 6154 0 202 164 75 45 chr12 12342366 12342433 -131444022 - MIR SINE MIR -63 145 77 2197 164 98 39 chr12 12343331 12343813 -131442642 + MLT2B1 LTR ERVL 1 510 -10 305 255 69 29 chr12 12344608 12344710 -131441745 - MIR SINE MIR -89 173 68 274 231 7 14 chr12 12346454 12346593 -131439862 + CT-rich Low_complexity Low_complexity 1 138 0 1731 186 0 10 chr12 12346593 12346888 -131439567 - AluJo SINE Alu -20 292 1 423 0 0 0 chr12 12347755 12347802 -131438653 + (CA)n Simple_repeat Simple_repeat 2 48 0 328 245 21 21 chr12 12350642 12350736 -131435719 + MIR SINE MIR 34 127 -81 944 217 50 4 chr12 12350793 12351033 -131435422 - L1MA4 LINE L1 -2 6298 6048 630 193 18 12 chr12 12352941 12353107 -131433348 + GA-rich Low_complexity Low_complexity 3 169 0 1799 168 13 10 chr12 12354284 12354418 -131432037 + AluJo SINE Alu 1 133 -179 2256 116 0 0 chr12 12354418 12354721 -131431734 + AluSg1 SINE Alu 1 303 -6 1799 168 13 10 chr12 12354721 12354889 -131431566 + AluJo SINE Alu 133 304 -8 211 258 30 15 chr12 12355203 12355269 -131431186 - L2 LINE L2 -9 3304 3238 322 318 56 8 chr12 12356824 12356950 -131429505 - L2 LINE L2 -4 3309 3178 1612 151 70 15 chr12 12357123 12357394 -131429061 + AluSx SINE Alu 5 290 -22 276 30 0 0 chr12 12358627 12358660 -131427795 + (CA)n Simple_repeat Simple_repeat 2 34 0 1724 154 7 18 chr12 12361125 12361405 -131425050 + AluJo SINE Alu 1 277 -35 2395 78 20 0 chr12 12361801 12362095 -131424360 - AluSx SINE Alu -12 300 1 1510 149 51 4 chr12 12362215 12362491 -131423964 - L1MA4 LINE L1 -3 6297 6009 315 290 12 99 chr12 12363797 12363883 -131422572 + MIR3 SINE MIR 37 104 -104 2105 129 3 0 chr12 12363883 12364185 -131422270 + AluSx SINE Alu 1 303 -9 315 290 12 99 chr12 12364185 12364260 -131422195 + MIR3 SINE MIR 104 184 -24 226 231 216 15 chr12 12364341 12364475 -131421980 - MIR SINE MIR -82 180 20 228 367 73 7 chr12 12365101 12365251 -131421204 + MIR3 SINE MIR 19 178 -30 624 272 30 65 chr12 12366105 12366337 -131420118 + MIR SINE MIR 30 253 -9 297 167 0 0 chr12 12366352 12366406 -131420049 + GA-rich Low_complexity Low_complexity 1 54 0 302 296 95 28 chr12 12367965 12368144 -131418311 + MIR3 SINE MIR 18 208 0 2205 107 3 3 chr12 12368305 12368596 -131417859 + AluSx SINE Alu 2 292 -20 185 316 120 8 chr12 12368798 12368915 -131417540 - L2 LINE L2 -1 3271 3142 240 59 0 0 chr12 12371902 12371936 -131414519 + (T)n Simple_repeat Simple_repeat 1 34 0 184 89 22 44 chr12 12372444 12372489 -131413966 + (CGGGG)n Simple_repeat Simple_repeat 3 46 0 25 31 0 0 chr12 12372601 12372633 -131413822 + GC_rich Low_complexity Low_complexity 1 32 0 34 85 0 23 chr12 12372832 12372962 -131413493 + GC_rich Low_complexity Low_complexity 1 127 0 21 0 0 0 chr12 12373825 12373846 -131412609 + AT_rich Low_complexity Low_complexity 1 21 0 2294 61 44 7 chr12 12374371 12374668 -131411787 - AluY SINE Alu -3 308 1 355 230 63 24 chr12 12374780 12374906 -131411549 + MIR SINE MIR 132 262 0 5006 143 47 17 chr12 12375064 12375960 -131410495 - Cheshire DNA MER1_type 0 2420 1498 1832 280 69 28 chr12 12375964 12376967 -131409488 - L1MEc LINE L1 -4190 2932 1878 503 176 176 0 chr12 12376967 12377075 -131409380 - FLAM_C SINE Alu -3 130 4 1832 280 69 28 chr12 12377075 12377176 -131409279 - L1MEc LINE L1 -5244 1878 1783 1815 95 46 8 chr12 12377176 12377438 -131409017 - AluY SINE Alu -39 272 1 2325 80 0 39 chr12 12377469 12377781 -131408674 - AluY SINE Alu -11 300 1 291 276 53 79 chr12 12377785 12378013 -131408442 - L1MEc LINE L1 -5073 1350 1129 363 286 75 28 chr12 12378404 12378659 -131407796 - L1MEc LINE L1 -6120 303 37 2135 133 0 7 chr12 12378771 12379080 -131407375 + AluSg1 SINE Alu 2 308 -1 216 0 0 0 chr12 12379430 12379454 -131407001 + (TG)n Simple_repeat Simple_repeat 2 25 0 1381 249 36 10 chr12 12379505 12379959 -131406496 - MLT2F LTR ERVL -159 504 1 2860 174 11 43 chr12 12380359 12380888 -131405567 - MLT2B1 LTR ERVL -8 512 1 246 32 0 0 chr12 12380943 12380974 -131405481 + (CA)n Simple_repeat Simple_repeat 1 31 0 257 277 100 31 chr12 12381052 12381166 -131405289 + ERVL-E LTR ERVL 1266 1391 -4373 789 247 0 6 chr12 12381166 12381324 -131405131 + FRAM SINE Alu 1 157 -9 257 277 100 31 chr12 12381324 12381339 -131405116 + ERVL-E LTR ERVL 1391 1404 -4360 213 175 0 0 chr12 12381371 12381411 -131405044 + G-rich Low_complexity Low_complexity 5 44 0 222 86 57 0 chr12 12381414 12381449 -131405006 + GA-rich Low_complexity Low_complexity 2 38 0 2645 276 78 33 chr12 12381449 12381719 -131404736 + ERVL-E LTR ERVL 1376 1633 -4131 1559 144 0 12 chr12 12381719 12381982 -131404473 + AluSx SINE Alu 44 303 0 2645 276 78 33 chr12 12381982 12382521 -131403934 + ERVL-E LTR ERVL 1633 2238 -3526 2226 137 36 39 chr12 12382521 12382885 -131403570 - THE1B LTR MaLR -1 363 1 2645 276 78 33 chr12 12382885 12383037 -131403418 + ERVL-E LTR ERVL 2238 2382 -3382 687 288 31 3 chr12 12383047 12383401 -131403054 + ERVL-E LTR ERVL 2624 2977 -2677 * 3012 251 21 6 chr12 12383398 12384106 -131402349 + ERVL-E LTR ERVL 3091 3809 -1955 * 3436 265 64 66 chr12 12384104 12384410 -131402045 + ERVL-E LTR ERVL 4411 4716 -1048 2245 110 3 0 chr12 12384410 12384709 -131401746 - AluSq SINE Alu -13 300 1 3436 265 64 66 chr12 12384709 12385030 -131401425 + ERVL-E LTR ERVL 4716 5036 -728 2347 52 3 85 chr12 12385030 12385360 -131401095 + AluY SINE Alu 1 303 -8 3436 265 64 66 chr12 12385360 12385941 -131400514 + ERVL-E LTR ERVL 5036 5619 -145 3484 121 84 6 chr12 12385941 12386430 -131400025 - MER1A DNA MER1_type 0 527 1 3436 265 64 66 chr12 12386430 12386563 -131399892 + ERVL-E LTR ERVL 5619 5751 -13 622 289 28 38 chr12 12386564 12386758 -131399697 + MLT2E LTR ERVL 28 226 -402 554 311 7 7 chr12 12386779 12386927 -131399528 + MLT2E LTR ERVL 336 483 -145 614 236 117 48 chr12 12386928 12387343 -131399112 - L1MC5 LINE L1 -876 7085 2759 392 121 18 0 chr12 12387371 12387436 -131399019 - MER58 DNA MER1_type 0 2420 2355 410 279 55 58 chr12 12387458 12387805 -131398650 - L1MC5 LINE L1 -3653 2493 2148 462 368 55 18 chr12 12387959 12388231 -131398224 + MLT1I LTR MaLR 126 407 -2 2627 40 0 7 chr12 12388397 12388701 -131397754 - AluY SINE Alu -9 302 1 373 253 153 6 chr12 12388868 12389123 -131397332 - MER46C DNA MER2_type 0 338 2 1766 167 0 11 chr12 12389364 12389651 -131396804 + AluJo SINE Alu 6 289 -23 283 286 111 58 chr12 12389836 12390007 -131396448 - L3 LINE CR1 -32 1545 1366 187 222 0 0 chr12 12390044 12390080 -131396375 - L3 LINE CR1 -354 1223 1188 2112 107 3 43 chr12 12390189 12390515 -131395940 - AluSp SINE Alu 0 313 1 454 262 153 82 chr12 12392050 12392233 -131394222 - MER91A DNA MER1_type 0 196 1 2526 54 0 0 chr12 12392878 12393176 -131393279 + AluY SINE Alu 1 298 -13 1977 162 3 0 chr12 12393190 12393492 -131392963 + AluJo SINE Alu 1 303 -9 239 275 38 100 chr12 12394061 12394106 -131392349 - MIR3 SINE MIR -21 187 141 769 214 55 33 chr12 12394106 12394180 -131392275 - MER5A DNA MER1_type 0 189 118 2305 115 0 0 chr12 12394180 12394484 -131391971 - AluSx SINE Alu -8 304 1 769 214 55 33 chr12 12394484 12394591 -131391864 - MER5A DNA MER1_type -71 118 4 239 275 38 100 chr12 12394591 12394705 -131391750 - MIR3 SINE MIR -67 141 38 2795 141 30 36 chr12 12395031 12395415 -131391040 - L1MA4 LINE L1 -4 6296 5911 2417 75 0 3 chr12 12395415 12395722 -131390733 - AluY SINE Alu -5 306 1 1853 178 0 3 chr12 12395724 12396017 -131390438 - AluJo SINE Alu -16 296 5 2795 141 30 36 chr12 12396017 12396126 -131390329 - L1MA4 LINE L1 -390 5910 5803 1032 188 0 0 chr12 12396126 12396296 -131390159 + FRAM SINE Alu 1 170 -6 445 109 16 0 chr12 12396296 12396360 -131390095 + L1MA4A LINE L1 5905 5969 -334 6754 151 20 13 chr12 12396365 12397918 -131388537 - L1MA4 LINE L1 -508 5795 4228 783 83 0 0 chr12 12397918 12398026 -131388429 + (TA)n Simple_repeat Simple_repeat 1 108 0 6754 151 20 13 chr12 12398026 12398128 -131388327 - L1MA4 LINE L1 -2075 4228 4128 923 180 155 126 chr12 12398141 12398664 -131387791 - MER34C LTR ERV1 -2 583 46 799 195 63 155 chr12 12398673 12398882 -131387573 - MER34C-int LTR ERV1 -1 6330 6103 301 114 0 0 chr12 12398882 12398926 -131387529 - L1M2 LINE L1 -741 5556 5513 799 195 63 155 chr12 12398926 12399380 -131387075 - MER34C-int LTR ERV1 -228 6103 4411 384 191 100 36 chr12 12399409 12399519 -131386936 - LTR37A LTR ERV1 -309 117 1 7156 172 44 72 chr12 12399520 12399929 -131386526 - MER34C-int LTR ERV1 -687 4249 3830 4058 101 34 2 chr12 12399929 12400466 -131385989 - MER41A LTR ERV1 0 554 1 7156 172 44 72 chr12 12400466 12400693 -131385762 - MER34C-int LTR ERV1 -1106 3830 3598 1586 172 25 11 chr12 12400693 12400978 -131385477 + AluJo SINE Alu 1 289 -23 7156 172 44 72 chr12 12400978 12401791 -131384664 - MER34C-int LTR ERV1 -1338 3598 2764 1852 159 3 31 chr12 12401791 12402112 -131384343 + AluJb SINE Alu 1 312 0 7156 172 44 72 chr12 12402112 12402128 -131384327 - MER34C-int LTR ERV1 -2172 2764 2749 668 171 26 17 chr12 12402128 12402245 -131384210 + FLAM_C SINE Alu 1 118 -15 183 42 0 0 chr12 12402249 12402273 -131384182 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2079 90 19 32 chr12 12402280 12402618 -131383837 + AluSq SINE Alu 1 313 0 7156 172 44 72 chr12 12402618 12402893 -131383562 - MER34C-int LTR ERV1 -2196 2740 2541 756 140 70 0 chr12 12402915 12403029 -131383426 - FRAM SINE Alu -36 140 19 30 59 0 0 chr12 12403173 12403224 -131383231 + AT_rich Low_complexity Low_complexity 1 51 0 1677 149 78 24 chr12 12403224 12403520 -131382935 - AluJo SINE Alu 0 312 1 1402 226 81 68 chr12 12403532 12403731 -131382724 - MER34C-int LTR ERV1 -2571 2365 2170 1721 77 0 14 chr12 12403731 12403952 -131382503 - L1PA8 LINE L1 -3 6169 5952 1402 226 81 68 chr12 12403952 12404430 -131382025 - MER34C-int LTR ERV1 -2766 2170 1679 2088 202 92 73 chr12 12404444 12405298 -131381157 - HUERS-P3b LTR ERV1 -2457 2414 904 2041 169 42 16 chr12 12405298 12405682 -131380773 + MSTA LTR MaLR 1 394 -34 2340 94 0 3 chr12 12405682 12405989 -131380466 - AluY SINE Alu -5 306 1 1004 33 100 0 chr12 12405992 12406112 -131380343 - AluYa5 SINE Alu -179 132 1 283 174 0 0 chr12 12406112 12406158 -131380297 + MSTA LTR MaLR 383 428 0 1077 263 76 57 chr12 12406311 12406916 -131379539 - HUERS-P3b LTR ERV1 -5402 929 355 254 213 21 0 chr12 12406948 12406995 -131379460 - HUERS-P3b LTR ERV1 -4889 2529 2482 1370 147 97 114 chr12 12407123 12407579 -131378876 + LTR7 LTR ERV1 1 448 -2 16546 89 34 22 chr12 12407581 12410395 -131376060 + HERVH LTR ERV1 1 2995 -4718 848 162 20 0 chr12 12410374 12410522 -131375933 + HERVH LTR ERV1 3140 3290 -4423 * 3500 97 4 4 chr12 12410521 12411015 -131375440 + HERVH LTR ERV1 3500 3993 -3720 4239 137 31 2 chr12 12411017 12411660 -131374795 + HERVH LTR ERV1 4488 5149 -2564 1491 116 19 0 chr12 12411661 12411877 -131374578 + HERVH LTR ERV1 5600 5819 -1894 * 1994 90 22 1 chr12 12411875 12412222 -131374233 + HERVH LTR ERV1 7322 7713 0 1493 158 119 75 chr12 12412222 12412651 -131373804 + LTR7 LTR ERV1 1 448 -2 861 199 141 100 chr12 12412978 12413446 -131373009 - MER34C LTR ERV1 -64 521 35 2344 82 0 3 chr12 12413688 12413979 -131372476 - AluSg SINE Alu -20 290 1 350 246 29 87 chr12 12414413 12414499 -131371956 + MIR3 SINE MIR 72 149 -59 950 243 84 63 chr12 12414499 12414832 -131371623 - MER102b DNA MER1_type 0 341 2 350 246 29 87 chr12 12414832 12414883 -131371572 + MIR3 SINE MIR 149 201 -7 2253 117 0 0 chr12 12415256 12415556 -131370899 + AluSx SINE Alu 1 300 -12 2443 74 3 0 chr12 12415849 12416148 -131370307 - AluSq SINE Alu -13 300 1 2033 127 48 0 chr12 12416349 12416641 -131369814 + AluJo SINE Alu 1 306 -6 2339 93 0 7 chr12 12416856 12417156 -131369299 - AluSg SINE Alu -12 298 1 803 198 188 102 chr12 12417383 12417894 -131368561 + MER34C LTR ERV1 31 585 0 260 336 0 19 chr12 12417972 12418076 -131368379 + MIR SINE MIR 158 259 -3 562 334 80 6 chr12 12418462 12418773 -131367682 + MLT1J2 LTR MaLR 115 448 -2 207 0 0 0 chr12 12418892 12418915 -131367540 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2109 81 0 4 chr12 12418947 12419206 -131367249 - AluSg SINE Alu -52 258 1 796 270 107 41 chr12 12419587 12419613 -131366842 + MLT1J2 LTR MaLR 36 59 -391 576 186 21 103 chr12 12419613 12419807 -131366648 - MER104 DNA MER2_type 0 180 3 796 270 107 41 chr12 12419807 12420206 -131366249 + MLT1J2 LTR MaLR 59 450 0 396 255 0 0 chr12 12420217 12420311 -131366144 + MIR SINE MIR 169 262 0 321 246 56 24 chr12 12421557 12421683 -131364772 - L1ME4a LINE L1 -3 6118 5989 1786 126 9 82 chr12 12422179 12422496 -131363959 - AluSx SINE Alu -18 294 1 180 235 118 20 chr12 12423251 12423302 -131363153 - L2 LINE L2 -76 3196 3141 623 67 90 0 chr12 12423468 12423587 -131362868 + AluSg/x SINE Alu 182 308 0 227 385 31 0 chr12 12423877 12424007 -131362448 - L2 LINE L2 -496 2818 2685 697 261 35 39 chr12 12424533 12424763 -131361692 - MER112 DNA MER1_type -9 251 23 343 228 106 41 chr12 12424838 12424961 -131361494 - MIR SINE MIR -57 151 21 1261 180 71 59 chr12 12425209 12425548 -131360907 - MER2 DNA MER2_type 0 344 2 412 288 31 31 chr12 12425859 12426019 -131360436 + MIR3 SINE MIR 9 168 -40 2316 90 0 0 chr12 12426506 12426795 -131359660 + AluSx SINE Alu 7 295 -17 1019 322 55 21 chr12 12426820 12427354 -131359101 - L2 LINE L2 0 3313 2765 395 285 46 26 chr12 12427977 12428128 -131358327 + MIR SINE MIR 109 262 0 542 359 28 35 chr12 12428132 12428422 -131358033 - L2 LINE L2 -541 2773 2486 2040 130 20 0 chr12 12428482 12428783 -131357672 - AluSx SINE Alu -5 307 1 1548 253 62 48 chr12 12429279 12429667 -131356788 + L2 LINE L2 2368 2781 -532 1785 182 11 40 chr12 12429667 12430019 -131356436 + MER61A LTR ERV1 2 343 0 1548 253 62 48 chr12 12430019 12430302 -131356153 + L2 LINE L2 2781 3059 -254 2380 91 0 0 chr12 12430687 12430983 -131355472 - AluSp SINE Alu -17 296 1 368 162 18 90 chr12 12431017 12431128 -131355327 + L2 LINE L2 3197 3299 -14 274 218 136 55 chr12 12431417 12431527 -131354928 - MIR SINE MIR -133 129 11 2513 71 0 3 chr12 12432542 12432852 -131353603 - AluY SINE Alu -2 309 1 276 125 47 0 chr12 12432880 12432944 -131353511 + GA-rich Low_complexity Low_complexity 3 69 0 2061 140 0 16 chr12 12433410 12433724 -131352731 + AluSx SINE Alu 1 309 -3 2187 132 0 22 chr12 12433985 12434304 -131352151 - AluSx SINE Alu 0 312 1 844 146 0 111 chr12 12434324 12434495 -131351960 - AluJb SINE Alu -20 292 141 481 296 98 40 chr12 12435224 12435552 -131350903 - L2 LINE L2 -820 2494 2148 427 193 220 37 chr12 12436164 12436273 -131350182 + FLAM_A SINE Alu 1 129 -4 26 0 0 0 chr12 12436473 12436499 -131349956 + AT_rich Low_complexity Low_complexity 1 26 0 853 180 186 6 chr12 12436516 12436699 -131349756 - AluSq SINE Alu -97 216 1 35 0 0 0 chr12 12436699 12436734 -131349721 + AT_rich Low_complexity Low_complexity 1 35 0 2513 52 0 0 chr12 12436734 12437025 -131349430 - AluY SINE Alu -20 291 1 1053 117 0 7 chr12 12437026 12437171 -131349284 - AluSq/x SINE Alu -168 144 1 198 347 28 0 chr12 12437414 12437486 -131348969 + MIR SINE MIR 81 154 -108 336 311 108 78 chr12 12437619 12437963 -131348492 - L2 LINE L2 -93 3179 2826 201 356 71 47 chr12 12438110 12438363 -131348092 - L2 LINE L2 -690 2624 2366 241 202 34 92 chr12 12438389 12438508 -131347947 - HAL1 LINE L1 -1481 1026 915 780 159 56 0 chr12 12438757 12438883 -131347572 - FLAM_A SINE Alu 0 133 1 265 286 65 13 chr12 12438892 12438969 -131347486 - HAL1 LINE L1 -2422 85 5 267 293 35 52 chr12 12439608 12439724 -131346731 - L2 LINE L2 -7 3306 3193 1647 167 10 20 chr12 12439781 12440080 -131346375 - AluJo SINE Alu -16 296 1 25 0 0 0 chr12 12440405 12440430 -131346025 + AT_rich Low_complexity Low_complexity 1 25 0 192 40 0 0 chr12 12440826 12440851 -131345604 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 279 119 169 0 chr12 12440864 12440923 -131345532 - L2 LINE L2 -3 3269 3201 507 139 0 0 chr12 12441092 12441178 -131345277 - L1PB2 LINE L1 -3 6148 6063 1684 158 18 7 chr12 12441237 12441560 -131344895 - AluJo SINE Alu 0 326 1 2205 119 3 6 chr12 12443133 12443444 -131343011 + AluSx SINE Alu 1 310 -2 1768 157 17 3 chr12 12443821 12444108 -131342347 - AluJo SINE Alu -13 299 9 27 0 0 0 chr12 12444116 12444143 -131342312 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr12 12444222 12444250 -131342205 + AT_rich Low_complexity Low_complexity 1 28 0 2660 146 33 12 chr12 12445392 12445811 -131340644 + MSTA LTR MaLR 1 428 0 436 209 9 35 chr12 12445883 12445998 -131340457 - MIR SINE MIR -65 197 86 399 262 110 4 chr12 12446126 12446305 -131340150 - LTR40c LTR ERVL -119 346 142 1056 154 57 92 chr12 12446606 12446833 -131339622 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chr12 12447443 12447465 -131338990 + AT_rich Low_complexity Low_complexity 1 22 0 3719 148 42 17 chr12 12447836 12448562 -131337893 + L1MC4 LINE L1 982 1820 -4606 2405 71 10 0 chr12 12448562 12448858 -131337597 - AluSp SINE Alu -14 299 1 3719 148 42 17 chr12 12448858 12449070 -131337385 + L1MC4 LINE L1 1820 2025 -4401 1709 150 26 46 chr12 12449092 12449399 -131337056 + AluJo SINE Alu 1 301 -11 9849 230 49 28 chr12 12450164 12453011 -131333444 + L1MC4 LINE L1 2725 8070 -252 2163 121 7 0 chr12 12453011 12453316 -131333139 + AluSx SINE Alu 3 309 -3 9849 230 49 28 chr12 12453316 12453476 -131332979 + L1MC4 LINE L1 8070 8225 -97 5103 106 11 68 chr12 12453964 12454512 -131331943 + L1PB4 LINE L1 5317 5895 -261 2375 85 0 16 chr12 12454512 12454828 -131331627 + AluY SINE Alu 1 311 0 5103 106 11 68 chr12 12454828 12455031 -131331424 + L1PB4 LINE L1 5895 6014 -142 2517 66 0 0 chr12 12455031 12455333 -131331122 + AluY SINE Alu 1 302 -9 5103 106 11 68 chr12 12455333 12455456 -131330999 + L1PB4 LINE L1 6014 6142 -14 2663 188 27 20 chr12 12455462 12455512 -131330943 + L1M4 LINE L1 4980 5028 -1156 2313 78 10 10 chr12 12455512 12455807 -131330648 + AluSg SINE Alu 1 295 -15 2663 188 27 20 chr12 12455807 12456580 -131329875 + L1M4 LINE L1 5028 5798 -386 21 36 0 0 chr12 12456610 12456638 -131329817 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr12 12456777 12456809 -131329646 + AT_rich Low_complexity Low_complexity 1 32 0 2150 135 18 6 chr12 12456820 12457153 -131329302 - MER1B DNA MER1_type 0 339 3 27 81 0 0 chr12 12457621 12457683 -131328772 + AT_rich Low_complexity Low_complexity 1 62 0 1623 192 7 0 chr12 12457691 12457972 -131328483 + AluJb SINE Alu 3 285 -27 183 42 0 0 chr12 12457972 12457996 -131328459 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 309 274 135 55 chr12 12458290 12458527 -131327928 - MLT1L LTR MaLR -5 610 355 1766 152 9 48 chr12 12459242 12459558 -131326897 - AluJo SINE Alu -4 308 5 417 234 102 16 chr12 12459652 12459780 -131326675 - L1ME4a LINE L1 -4 6117 5979 1932 103 69 28 chr12 12460006 12460297 -131326158 + AluSx SINE Alu 1 303 -9 287 167 0 0 chr12 12460505 12460547 -131325908 - 5S rRNA rRNA -79 42 1 1627 177 3 32 chr12 12461235 12461546 -131324909 + AluJo SINE Alu 1 302 -10 453 274 70 13 chr12 12462205 12462362 -131324093 + MIR3 SINE MIR 33 198 -10 312 160 0 0 chr12 12462508 12462558 -131323897 + MIR SINE MIR 92 141 -67 22 0 0 0 chr12 12462744 12462766 -131323689 + AT_rich Low_complexity Low_complexity 1 22 0 3274 197 66 92 chr12 12463156 12463318 -131323137 + L1MC3 LINE L1 5623 5788 -1997 1821 149 3 48 chr12 12463318 12463634 -131322821 - AluJo SINE Alu -10 302 1 3274 197 66 92 chr12 12463634 12463927 -131322528 + L1MC3 LINE L1 5788 6087 -1698 1869 154 7 3 chr12 12463927 12464213 -131322242 + AluJo SINE Alu 1 287 -25 3274 197 66 92 chr12 12464213 12464839 -131321616 + L1MC3 LINE L1 6087 6676 -1109 313 157 0 0 chr12 12464860 12464911 -131321544 - MER53 DNA DNA 0 189 139 341 70 18 0 chr12 12464916 12464973 -131321482 + (CA)n Simple_repeat Simple_repeat 2 59 0 415 92 0 40 chr12 12465672 12465748 -131320707 + (TTTC)n Simple_repeat Simple_repeat 2 74 0 727 114 9 44 chr12 12467050 12467164 -131319291 + FRAM SINE Alu 37 146 -30 186 43 0 0 chr12 12467167 12467190 -131319265 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 235 287 124 8 chr12 12467205 12467334 -131319121 + MIR SINE MIR 53 196 -66 199 0 0 61 chr12 12467413 12467446 -131319009 + (CAT)n Simple_repeat Simple_repeat 3 33 0 389 287 90 0 chr12 12468353 12468475 -131317980 - MIR3 SINE MIR -67 141 9 380 248 5 101 chr12 12468912 12468990 -131317465 - L1ME1 LINE L1 -43 6123 6039 1292 174 109 7 chr12 12468990 12469266 -131317189 + AluJo SINE Alu 1 304 -8 380 248 5 101 chr12 12469266 12469405 -131317050 - L1ME1 LINE L1 -127 6039 5927 1174 200 18 49 chr12 12469417 12469702 -131316753 - L1MC4 LINE L1 0 8042 7767 1161 133 24 0 chr12 12469706 12469872 -131316583 + AluSg/x SINE Alu 140 309 -3 4628 199 94 43 chr12 12469894 12470503 -131315952 - L1MC4 LINE L1 -261 7781 7205 1941 126 29 0 chr12 12470503 12470781 -131315674 + AluJb SINE Alu 1 286 -26 4628 199 94 43 chr12 12470781 12471011 -131315444 - L1MC4 LINE L1 -837 7205 6988 2084 99 0 4 chr12 12471011 12471306 -131315149 - AluY SINE Alu 0 305 12 4628 199 94 43 chr12 12471306 12471723 -131314732 - L1MC4 LINE L1 -1054 6988 6458 246 340 122 20 chr12 12471961 12472158 -131314297 + L2 LINE L2 2642 2858 -456 352 310 67 106 chr12 12472282 12472537 -131313918 + L2 LINE L2 3018 3262 -10 2055 68 4 17 chr12 12472537 12472859 -131313596 + AluSg SINE Alu 1 279 -31 293 195 29 2 chr12 12472947 12473015 -131313440 + MLT1B LTR MaLR 330 390 0 270 279 11 28 chr12 12473041 12473155 -131313300 - MLT1F LTR MaLR -437 105 25 605 189 0 9 chr12 12473914 12474025 -131312430 - MLT1C LTR MaLR -4 463 354 4054 110 282 70 chr12 12474028 12475307 -131311148 - pTR5 LTR ERV1 0 2438 743 239 241 0 0 chr12 12475309 12475363 -131311092 - MLT1C LTR MaLR -112 355 302 1284 87 5 32 chr12 12475448 12475633 -131310822 + LTR9 LTR ERV1 1 180 -432 445 115 16 0 chr12 12475877 12475938 -131310517 - U7 snRNA snRNA 0 63 2 665 100 11 0 chr12 12478055 12478145 -131308310 + FLAM_A SINE Alu 32 122 -20 252 0 0 0 chr12 12478647 12478675 -131307780 + (CA)n Simple_repeat Simple_repeat 2 29 0 342 330 9 0 chr12 12479082 12479194 -131307261 + MIR3 SINE MIR 85 197 -11 360 315 12 42 chr12 12479216 12479381 -131307074 + MIR3 SINE MIR 42 201 -7 218 338 0 12 chr12 12479483 12479563 -131306892 + CT-rich Low_complexity Low_complexity 6 84 0 1570 222 0 0 chr12 12479827 12480179 -131306276 + AluJb SINE Alu 3 354 0 192 77 0 0 chr12 12480179 12480205 -131306250 + (GGGA)n Simple_repeat Simple_repeat 2 27 0 815 101 8 214 chr12 12480314 12480552 -131305903 - MER53 DNA DNA 0 189 1 1347 214 63 9 chr12 12480714 12481045 -131305410 + MLT1A2 LTR MaLR 1 349 -25 194 219 0 0 chr12 12481209 12481250 -131305205 + MIR SINE MIR 65 105 -103 612 168 11 6 chr12 12481449 12481628 -131304827 + (CA)n Simple_repeat Simple_repeat 1 180 0 273 169 0 0 chr12 12481661 12481720 -131304735 + (CA)n Simple_repeat Simple_repeat 1 59 0 565 304 92 17 chr12 12482800 12483005 -131303450 + MIR SINE MIR 1 228 -34 2520 152 22 0 chr12 12483005 12483413 -131303042 + L1MB5 LINE L1 5746 6162 -12 565 304 92 17 chr12 12483413 12483447 -131303008 + MIR SINE MIR 228 258 -4 7683 52 0 0 chr12 12485135 12486093 -131300362 - L1PA8 LINE L1 -8 6164 5221 21 71 0 0 chr12 12486168 12486210 -131300245 + AT_rich Low_complexity Low_complexity 1 42 0 1196 252 45 38 chr12 12487039 12487490 -131298965 - MER77 LTR ERV1 -6 599 177 1007 252 19 56 chr12 12488008 12488329 -131298126 + L1MD3 LINE L1 7686 7994 -1 2636 132 48 10 chr12 12488453 12488869 -131297586 + MSTB1 LTR MaLR 1 432 0 648 222 52 20 chr12 12488997 12489150 -131297305 - MER63 DNA MER1_type -277 785 2 493 310 33 18 chr12 12489161 12489496 -131296959 - L1M4 LINE L1 -869 5277 4938 484 229 98 49 chr12 12489941 12490156 -131296299 + MLT1H LTR MaLR 335 549 0 16968 42 1 1 chr12 12490273 12492322 -131294133 + L1P LINE L1 2599 4647 -1499 3681 247 33 55 chr12 12492347 12492607 -131293848 + L1MDa LINE L1 2015 2279 -4261 1638 52 0 0 chr12 12492607 12492800 -131293655 - L1PA4 LINE L1 0 6155 5963 3681 247 33 55 chr12 12492800 12494340 -131292115 + L1MDa LINE L1 2279 3796 -2744 252 284 0 0 chr12 12494360 12494466 -131291989 + L1MDa LINE L1 3309 3414 -3126 2477 57 0 0 chr12 12494489 12494786 -131291669 + AluY SINE Alu 2 298 -13 294 208 26 0 chr12 12494852 12494929 -131291526 - L1M4 LINE L1 -2205 3941 3863 4463 242 93 26 chr12 12494970 12496559 -131289896 + L1MDa LINE L1 3872 5566 -974 864 228 146 24 chr12 12496702 12497071 -131289384 + L1M4 LINE L1 4187 4600 -1546 22 56 0 0 chr12 12498122 12498158 -131288297 + AT_rich Low_complexity Low_complexity 1 36 0 30 69 0 0 chr12 12498470 12498528 -131287927 + AT_rich Low_complexity Low_complexity 1 58 0 200 188 0 0 chr12 12498623 12498655 -131287800 + (CA)n Simple_repeat Simple_repeat 1 32 0 1324 56 6 0 chr12 12498821 12498982 -131287473 + L1PA4 LINE L1 5993 6154 -1 1735 202 56 31 chr12 12499085 12499441 -131287014 - MLT1A1 LTR MaLR 0 365 1 1553 194 16 32 chr12 12499484 12499793 -131286662 - AluJo SINE Alu -8 304 1 2365 76 7 3 chr12 12500122 12500424 -131286031 + AluSc SINE Alu 1 303 -6 22 0 0 0 chr12 12504126 12504148 -131282307 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr12 12504298 12504326 -131282129 + AT_rich Low_complexity Low_complexity 1 28 0 2437 56 3 7 chr12 12504661 12504785 -131281670 + AluY SINE Alu 1 124 -187 212 0 36 0 chr12 12504785 12504813 -131281642 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 2437 56 3 7 chr12 12504813 12504990 -131281465 + AluY SINE Alu 124 301 -10 974 192 67 10 chr12 12505110 12505128 -131281327 + AluJb SINE Alu 101 117 -195 278 0 54 0 chr12 12505128 12505165 -131281290 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 974 192 67 10 chr12 12505165 12505339 -131281116 + AluJb SINE Alu 117 304 -8 2060 88 19 0 chr12 12506147 12506407 -131280048 + AluSx SINE Alu 37 301 -11 2335 81 3 0 chr12 12507454 12507752 -131278703 - AluSc SINE Alu -10 299 1 360 0 0 0 chr12 12507956 12507996 -131278459 + (CA)n Simple_repeat Simple_repeat 1 40 0 211 295 0 32 chr12 12508476 12508571 -131277884 + T-rich Low_complexity Low_complexity 3 94 0 2286 103 3 0 chr12 12509743 12510035 -131276420 - AluSq SINE Alu -20 293 1 2710 183 14 2 chr12 12510454 12510951 -131275504 - L1MB3 LINE L1 0 6183 5681 240 320 60 77 chr12 12511251 12511604 -131274851 - L2 LINE L2 -412 2902 2556 181 190 35 9 chr12 12511714 12511830 -131274625 + (TA)n Simple_repeat Simple_repeat 2 120 0 1753 164 62 49 chr12 12512064 12512449 -131274006 + MLT1B LTR MaLR 1 390 0 440 146 101 0 chr12 12512453 12512542 -131273913 - MIR SINE MIR -92 170 73 422 200 0 0 chr12 12513065 12513145 -131273310 - MER116 DNA Mariner 0 80 1 381 250 75 25 chr12 12513336 12513456 -131272999 + MER39 LTR ERV1 1 126 -581 * 440 208 10 10 chr12 12513445 12513541 -131272914 + MER39 LTR ERV1 276 371 -336 256 233 33 0 chr12 12513769 12513829 -131272626 + MIR SINE MIR 195 256 -6 190 247 180 45 chr12 12514811 12514900 -131271555 - MIR SINE MIR -66 142 42 263 296 0 14 chr12 12515027 12515098 -131271357 + (TG)n Simple_repeat Simple_repeat 1 70 0 456 77 0 0 chr12 12515425 12515490 -131270965 + (TC)n Simple_repeat Simple_repeat 2 66 0 315 0 0 0 chr12 12515490 12515525 -131270930 + (CA)n Simple_repeat Simple_repeat 1 35 0 244 279 36 27 chr12 12515570 12515681 -131270774 + MER112 DNA MER1_type 6 117 -143 207 0 0 0 chr12 12515830 12515853 -131270602 + (CATAG)n Simple_repeat Simple_repeat 2 24 0 291 350 6 13 chr12 12515855 12516012 -131270443 - MER112 DNA MER1_type -104 156 1 201 317 17 0 chr12 12516297 12516357 -131270098 + MIR SINE MIR 85 145 -117 2501 249 74 8 chr12 12518365 12519642 -131266813 + L1MB3 LINE L1 4299 5668 -574 213 94 0 0 chr12 12519769 12519801 -131266654 + (A)n Simple_repeat Simple_repeat 1 32 0 188 214 107 18 chr12 12524019 12524075 -131262380 + MIR3 SINE MIR 118 178 -30 596 174 0 0 chr12 12524478 12524576 -131261879 + AluJ/FLAM SINE Alu 5 102 -210 2148 110 10 10 chr12 12524962 12525262 -131261193 + AluSc SINE Alu 1 300 -9 417 158 0 13 chr12 12525285 12525361 -131261094 + FLAM_A SINE Alu 47 121 -21 22 0 0 0 chr12 12525363 12525385 -131261070 + AT_rich Low_complexity Low_complexity 1 22 0 1329 185 34 14 chr12 12525388 12525680 -131260775 + L1MB3 LINE L1 5883 6180 -3 604 118 7 37 chr12 12525696 12525832 -131260623 + (GAAA)n Simple_repeat Simple_repeat 4 135 0 806 205 13 8 chr12 12526011 12526207 -131260248 - MLT1J LTR MaLR -287 175 5 204 338 110 15 chr12 12526384 12526520 -131259935 - L2 LINE L2 0 3272 3124 796 212 114 0 chr12 12527577 12527770 -131258685 - MER58C DNA MER1_type 0 215 1 429 319 51 47 chr12 12527871 12528147 -131258308 + L2 LINE L2 2377 2653 -661 857 222 48 39 chr12 12528475 12528806 -131257649 + L1MC4 LINE L1 6449 6982 -1060 203 346 13 97 chr12 12528978 12529206 -131257249 - L3 LINE CR1 -521 1056 848 927 260 56 54 chr12 12529585 12530069 -131256386 + L1MC5 LINE L1 7195 7679 -282 2784 173 6 16 chr12 12530078 12530570 -131255885 + Ricksha DNA DNA 104 590 -2656 2275 119 94 44 chr12 12530566 12530710 -131255745 + Ricksha DNA DNA 2784 2919 -327 * 1553 88 14 0 chr12 12530710 12530925 -131255530 - L1PA11 LINE L1 -1 6173 5956 2275 119 94 44 chr12 12530925 12531215 -131255240 + Ricksha DNA DNA 2919 3240 -6 407 176 5 0 chr12 12531239 12531326 -131255129 - L1 LINE L1 -1321 4825 4736 323 184 66 0 chr12 12531360 12531436 -131255019 + L1ME1 LINE L1 5093 5173 -973 797 169 0 40 chr12 12531501 12531649 -131254806 + FAM SINE Alu 1 142 -43 3704 222 55 3 chr12 12531690 12532600 -131253855 + L1ME1 LINE L1 5191 6139 -27 215 377 110 0 chr12 12533680 12533871 -131252584 + L2 LINE L2 2135 2346 -968 1177 278 59 16 chr12 12534175 12534546 -131251909 + MLT1J LTR MaLR 15 401 -110 235 228 87 22 chr12 12534541 12534633 -131251822 + MLT1J1 LTR MaLR 348 445 -1 * 304 318 65 46 chr12 12534962 12535179 -131251276 + L2 LINE L2 2619 2839 -475 892 200 167 78 chr12 12535760 12536120 -131250335 + MER110A LTR ERV1 21 412 -56 3069 111 125 36 chr12 12536126 12536685 -131249770 - MER4B LTR ERV1 0 610 2 1997 153 18 12 chr12 12536687 12537020 -131249435 + MER1B DNA MER1_type 1 335 -4 264 302 35 0 chr12 12537038 12537124 -131249331 + MER110 LTR ERV1 403 491 0 233 224 0 0 chr12 12537186 12537235 -131249220 + MER5A DNA MER1_type 58 106 -83 1791 103 4 24 chr12 12537320 12537573 -131248882 + AluSg SINE Alu 1 248 -62 335 315 0 9 chr12 12538371 12538479 -131247976 - MIR3 SINE MIR -1 207 101 254 181 239 36 chr12 12538483 12538621 -131247834 - MER34B LTR ERV1 0 565 400 503 217 98 27 chr12 12538641 12538825 -131247630 + L2 LINE L2 3117 3313 0 697 248 6 0 chr12 12538831 12538992 -131247463 + MIR SINE MIR 88 249 -13 1968 138 10 7 chr12 12539000 12539304 -131247151 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr12 12539312 12539333 -131247122 + AT_rich Low_complexity Low_complexity 1 21 0 279 328 101 8 chr12 12539337 12539456 -131246999 + L2 LINE L2 3143 3272 0 241 292 33 42 chr12 12539924 12540044 -131246411 + MIR3 SINE MIR 87 205 -3 1909 199 80 3 chr12 12540722 12541084 -131245371 - MLT1E LTR MaLR -1 592 203 683 220 48 48 chr12 12541253 12541462 -131244993 - MIR SINE MIR -26 236 28 2505 121 69 48 chr12 12542626 12542706 -131243749 - Tigger2 DNA MER2_type 0 2718 2641 1534 150 40 0 chr12 12542706 12542959 -131243496 - L1PB4 LINE L1 -13 6143 5881 2505 121 69 48 chr12 12542959 12543315 -131243140 - Tigger2 DNA MER2_type -77 2641 2273 397 183 28 0 chr12 12543301 12543372 -131243083 - Tigger2 DNA MER2_type -2645 73 1 * 214 195 0 0 chr12 12543532 12543573 -131242882 + T-rich Low_complexity Low_complexity 1 41 0 1890 147 49 3 chr12 12543583 12543930 -131242525 - L1MB3 LINE L1 -7 6176 5814 1747 169 0 4 chr12 12545302 12545581 -131240874 + AluJb SINE Alu 17 294 -18 189 224 17 103 chr12 12546235 12546293 -131240162 + L3 LINE CR1 1512 1564 -13 388 283 20 53 chr12 12546545 12546697 -131239758 + L2 LINE L2 3163 3309 -4 226 274 0 0 chr12 12546748 12546799 -131239656 + GA-rich Low_complexity Low_complexity 2 52 0 2164 109 17 7 chr12 12546814 12547108 -131239347 - AluSx SINE Alu -15 297 1 24 32 0 0 chr12 12547121 12547152 -131239303 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr12 12547238 12547260 -131239195 + (TG)n Simple_repeat Simple_repeat 1 22 0 1135 197 67 47 chr12 12547302 12547601 -131238854 + L1MA9 LINE L1 5793 6097 -215 317 230 122 54 chr12 12548687 12548835 -131237620 - MIR SINE MIR -56 206 49 234 150 0 0 chr12 12551793 12551833 -131234622 + (TCTCC)n Simple_repeat Simple_repeat 4 43 0 752 199 8 0 chr12 12551833 12551964 -131234491 - FLAM_A SINE Alu -1 132 1 1873 173 53 60 chr12 12552038 12552454 -131234001 + MLT2D LTR ERVL 2 414 0 386 301 38 2 chr12 12552844 12553034 -131233421 - MIR SINE MIR -13 249 17 183 344 31 0 chr12 12554839 12554903 -131231552 + MIR SINE MIR 34 99 -109 1587 162 196 9 chr12 12554962 12555308 -131231147 - MLT2D LTR ERVL 0 414 4 693 279 47 39 chr12 12555936 12556190 -131230265 + L2 LINE L2 2882 3137 -176 692 204 52 17 chr12 12556231 12556403 -131230052 + MER5B DNA MER1_type 1 178 0 427 242 50 0 chr12 12556546 12556645 -131229810 + L2 LINE L2 3209 3312 -1 198 0 0 0 chr12 12557118 12557140 -131229315 + (A)n Simple_repeat Simple_repeat 1 22 0 205 345 24 0 chr12 12557734 12557818 -131228637 - MIR3 SINE MIR -24 184 99 517 261 106 14 chr12 12557868 12558077 -131228378 - MIR SINE MIR -33 229 4 2190 61 104 0 chr12 12558546 12558825 -131227630 + AluY SINE Alu 1 308 -3 206 325 0 0 chr12 12559120 12559197 -131227258 + MIR3 SINE MIR 125 201 -7 754 207 5 69 chr12 12560830 12560948 -131225507 - MER45A DNA AcHobo -1403 178 75 1329 149 146 38 chr12 12560948 12561209 -131225246 + AluJb SINE Alu 1 289 -23 754 207 5 69 chr12 12561209 12561278 -131225177 - MER45A DNA AcHobo -1506 75 3 353 277 71 115 chr12 12562776 12562925 -131223530 + MIR SINE MIR 15 150 -112 5185 129 56 16 chr12 12562925 12564178 -131222277 + L1PA16 LINE L1 4873 6166 0 353 277 71 115 chr12 12564178 12564281 -131222174 + MIR SINE MIR 150 256 -6 651 200 133 0 chr12 12565305 12565470 -131220985 - MER5A DNA MER1_type 0 189 3 752 247 54 31 chr12 12565491 12565714 -131220741 + MIR SINE MIR 28 255 -7 313 264 11 0 chr12 12565748 12565835 -131220620 - MIR SINE MIR -1 261 174 180 352 0 0 chr12 12566042 12566096 -131220359 + L2 LINE L2 3215 3268 -4 201 327 10 59 chr12 12566955 12567056 -131219399 - L2 LINE L2 -23 3290 3195 2758 123 14 7 chr12 12568024 12568453 -131218002 + MSTB1 LTR MaLR 1 432 0 1826 152 28 0 chr12 12568946 12569229 -131217226 + AluJo SINE Alu 1 291 -21 383 270 86 26 chr12 12569348 12569500 -131216955 - MIR SINE MIR -71 191 31 2321 100 0 3 chr12 12570261 12570571 -131215884 - AluSx SINE Alu -3 309 1 2108 133 21 6 chr12 12570745 12571076 -131215379 + MER1B DNA MER1_type 1 336 -1 565 209 27 9 chr12 12574347 12574457 -131211998 - MER81 DNA DNA 0 114 3 272 250 148 0 chr12 12574781 12574869 -131211586 + MIR3 SINE MIR 84 184 -24 213 309 106 32 chr12 12575402 12575525 -131210930 + MIR SINE MIR 29 160 -102 2488 85 0 0 chr12 12575576 12575883 -131210572 + AluY SINE Alu 1 307 -4 1288 152 0 0 chr12 12576777 12576961 -131209494 + AluJo SINE Alu 3 186 -126 246 128 0 0 chr12 12576967 12577006 -131209449 + (A)n Simple_repeat Simple_repeat 1 39 0 711 231 67 29 chr12 12577081 12577319 -131209136 - MIR SINE MIR -14 248 2 234 0 0 0 chr12 12577537 12577563 -131208892 + (T)n Simple_repeat Simple_repeat 1 26 0 271 303 112 39 chr12 12577962 12578035 -131208420 + MIR SINE MIR 10 76 -186 189 0 0 0 chr12 12578035 12578056 -131208399 + (ATG)n Simple_repeat Simple_repeat 2 22 0 2342 81 7 3 chr12 12578056 12578351 -131208104 - AluSq SINE Alu -17 296 1 271 303 112 39 chr12 12578351 12578510 -131207945 + MIR SINE MIR 75 256 -6 251 327 39 29 chr12 12578529 12578633 -131207822 + L2 LINE L2 3132 3236 -36 322 297 83 35 chr12 12578674 12578819 -131207636 - L2 LINE L2 -2 3270 3119 393 294 46 0 chr12 12579349 12579458 -131206997 - L2 LINE L2 0 3313 3200 437 140 8 0 chr12 12580625 12580746 -131205709 + CT-rich Low_complexity Low_complexity 1 121 0 1768 131 47 24 chr12 12580748 12581046 -131205409 - AluJb SINE Alu -2 310 6 250 209 76 57 chr12 12581809 12581914 -131204541 + Charlie5 DNA MER1_type 3 109 -2503 1740 186 41 3 chr12 12581923 12582288 -131204167 + Charlie5 DNA MER1_type 2244 2622 0 21 0 0 0 chr12 12583140 12583161 -131203294 + AT_rich Low_complexity Low_complexity 1 21 0 462 208 146 14 chr12 12584296 12584440 -131202015 - MER5B DNA MER1_type 0 178 16 2219 135 0 3 chr12 12585238 12585550 -131200905 - AluJb SINE Alu -1 311 1 251 316 198 24 chr12 12587662 12588001 -131198454 - L3 LINE CR1 -1 1576 1179 273 247 55 0 chr12 12588800 12588873 -131197582 + MIR SINE MIR 120 196 -66 180 0 0 0 chr12 12589233 12589253 -131197202 + (T)n Simple_repeat Simple_repeat 1 20 0 510 17 0 0 chr12 12591725 12591784 -131194671 + (CA)n Simple_repeat Simple_repeat 1 59 0 234 62 0 0 chr12 12593226 12593258 -131193197 + (T)n Simple_repeat Simple_repeat 1 32 0 510 258 0 39 chr12 12596610 12596765 -131189690 - L2 LINE L2 0 3313 3165 210 331 181 19 chr12 12596928 12597088 -131189367 + MIR3 SINE MIR 16 201 -7 654 287 44 28 chr12 12597236 12597487 -131188968 - MIR SINE MIR -1 261 7 204 40 0 0 chr12 12597517 12597542 -131188913 + (TGGA)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 12599900 12599922 -131186533 + AT_rich Low_complexity Low_complexity 1 22 0 249 296 82 7 chr12 12599933 12600068 -131186387 - MIR SINE MIR -52 210 66 22 35 0 0 chr12 12601593 12601622 -131184833 + AT_rich Low_complexity Low_complexity 1 29 0 381 223 0 0 chr12 12603302 12603396 -131183059 + (TATATG)n Simple_repeat Simple_repeat 1 94 0 273 274 105 0 chr12 12603449 12603544 -131182911 - MIR SINE MIR -139 123 19 277 363 44 19 chr12 12604103 12604263 -131182192 + MIR3 SINE MIR 21 184 -24 529 249 113 0 chr12 12607207 12607384 -131179071 - MIR SINE MIR 0 262 66 2271 91 0 0 chr12 12608015 12608300 -131178155 + AluY SINE Alu 9 293 -18 1781 170 0 35 chr12 12608919 12609113 -131177342 - AluJo SINE Alu -2 310 130 3418 122 13 15 chr12 12609113 12609661 -131176794 - L1PA13 LINE L1 -8 6155 5609 1781 170 0 35 chr12 12609661 12609777 -131176678 - AluJo SINE Alu -182 130 11 1392 209 61 0 chr12 12609788 12610065 -131176390 - AluJo SINE Alu -18 294 1 210 277 60 0 chr12 12610142 12610225 -131176230 - L2 LINE L2 0 3313 3226 339 335 197 13 chr12 12610257 12610496 -131175959 + L3 LINE CR1 1220 1502 -75 1559 175 39 21 chr12 12610608 12610945 -131175510 + MER61A LTR ERV1 1 343 0 1763 157 7 4 chr12 12611014 12611295 -131175160 + AluJb SINE Alu 1 282 -30 33 0 0 0 chr12 12611300 12611333 -131175122 + AT_rich Low_complexity Low_complexity 1 33 0 1731 175 4 4 chr12 12612134 12612414 -131174041 + AluJo SINE Alu 3 282 -30 240 86 0 0 chr12 12612417 12612452 -131174003 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 230 335 50 37 chr12 12612454 12612615 -131173840 + MIR SINE MIR 20 182 -80 326 235 49 20 chr12 12613000 12613102 -131173353 + MIR SINE MIR 98 202 -60 203 86 0 29 chr12 12613688 12613723 -131172732 + (CCTG)n Simple_repeat Simple_repeat 4 37 0 185 314 23 35 chr12 12616652 12616738 -131169717 - L2 LINE L2 -1093 2221 2137 34 65 0 0 chr12 12616902 12616964 -131169491 + AT_rich Low_complexity Low_complexity 1 62 0 830 206 29 29 chr12 12617037 12617275 -131169180 - L1MDa LINE L1 -3981 2559 2322 31 26 0 0 chr12 12617405 12617443 -131169012 + AT_rich Low_complexity Low_complexity 1 38 0 289 216 27 0 chr12 12617443 12617517 -131168938 + MER3 DNA MER1_type 129 204 -5 247 234 0 0 chr12 12617482 12617529 -131168926 - MER3 DNA MER1_type -122 87 41 * 231 325 76 19 chr12 12617722 12617879 -131168576 - L2 LINE L2 -998 2316 2151 392 304 9 0 chr12 12617956 12618071 -131168384 + L2 LINE L2 3156 3271 -1 * 464 289 44 13 chr12 12618065 12618293 -131168162 - L2 LINE L2 -1230 2084 1850 749 285 110 53 chr12 12618744 12619301 -131167154 + HAL1 LINE L1 419 1030 -1477 2352 85 0 3 chr12 12619301 12619595 -131166860 - AluSc SINE Alu -16 293 1 749 285 110 53 chr12 12619595 12619774 -131166681 + HAL1 LINE L1 1030 1197 -1310 333 188 104 10 chr12 12619785 12619881 -131166574 + HAL1 LINE L1 1243 1347 -1160 277 209 33 55 chr12 12619892 12619983 -131166472 - Zaphod DNA AcHobo 0 4031 3943 956 287 93 28 chr12 12620435 12620906 -131165549 + HAL1 LINE L1 1347 1848 -659 333 230 0 23 chr12 12620952 12621039 -131165416 + HAL1 LINE L1 2012 2096 -411 232 282 167 0 chr12 12621370 12621448 -131165007 - MLT1F LTR MaLR -300 267 177 521 243 39 72 chr12 12621481 12621662 -131164793 - MLT1F LTR MaLR -341 201 27 205 301 52 81 chr12 12621804 12621940 -131164515 - L2 LINE L2 -385 2929 2798 712 279 117 28 chr12 12621982 12622419 -131164036 - L2 LINE L2 -1443 1871 1396 723 146 0 0 chr12 12622569 12622679 -131163776 - MSTA LTR MaLR 0 428 319 623 160 0 0 chr12 12622683 12622777 -131163678 - AluS SINE Alu -217 95 2 6024 81 1 13 chr12 12622778 12623607 -131162848 + L1PA14 LINE L1 5343 6161 0 912 162 59 72 chr12 12624164 12624386 -131162069 - MER20 DNA MER1_type 0 219 1 2050 133 7 10 chr12 12624533 12624834 -131161621 - AluSx SINE Alu -12 300 1 3127 166 49 53 chr12 12624836 12625584 -131160871 - L1MB2 LINE L1 -346 5825 5106 203 162 0 0 chr12 12625710 12625747 -131160708 + T-rich Low_complexity Low_complexity 4 40 0 936 259 79 20 chr12 12625779 12626173 -131160282 - L1ME3A LINE L1 -209 5961 5545 7909 36 0 2 chr12 12626188 12627439 -131159016 - L1PA4 LINE L1 -3 6152 4900 36948 62 6 1 chr12 12627444 12632118 -131154337 - L1PA4 LINE L1 -1416 4730 31 1075 209 19 12 chr12 12632118 12632377 -131154078 + HSMAR2 DNA Mariner 1040 1300 -2 681 190 8 0 chr12 12632896 12633017 -131153438 - MSTA LTR MaLR -304 122 1 8718 193 31 19 chr12 12633017 12634646 -131151809 - MSTA-int LTR MaLR 0 1651 3 2219 180 38 29 chr12 12634795 12635143 -131151312 + HSMAR2 DNA Mariner 669 1023 -279 5979 97 6 68 chr12 12635143 12636024 -131150431 + LTR12 LTR ERV1 1 826 0 2219 180 38 29 chr12 12636024 12636126 -131150329 + HSMAR2 DNA Mariner 1023 1123 -179 417 299 22 7 chr12 12636128 12636265 -131150190 + HERVL40 LTR ERVL 109 247 -5283 240 86 0 0 chr12 12636843 12636878 -131149577 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1403 235 7 17 chr12 12636880 12637169 -131149286 - AluJo SINE Alu -14 288 3 300 276 13 0 chr12 12637534 12637610 -131148845 + HERVL40 LTR ERVL 2051 2127 -3403 2627 232 47 38 chr12 12637983 12638705 -131147750 + HSMAR2 DNA Mariner 205 993 -309 1996 125 11 3 chr12 12638705 12638992 -131147463 + L1PB1 LINE L1 5860 6148 -3 2627 232 47 38 chr12 12638992 12639305 -131147150 + HSMAR2 DNA Mariner 993 1302 0 26 30 0 0 chr12 12639734 12639767 -131146688 + AT_rich Low_complexity Low_complexity 1 33 0 999 231 41 19 chr12 12640075 12640188 -131146267 + AluJo SINE Alu 16 125 -187 180 0 0 0 chr12 12640188 12640208 -131146247 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 999 231 41 19 chr12 12640208 12640363 -131146092 + AluJo SINE Alu 125 290 -22 822 240 11 107 chr12 12640788 12641154 -131145301 + MLT1B LTR MaLR 47 377 -13 254 222 14 28 chr12 12641154 12641226 -131145229 - L2 LINE L2 -910 2404 2334 1702 200 0 3 chr12 12643189 12643479 -131142976 - AluJb SINE Alu -23 289 1 1237 231 155 29 chr12 12644505 12644950 -131141505 - MLT1D LTR MaLR -4 501 1 304 277 83 94 chr12 12645224 12645322 -131141133 + L1M2 LINE L1 897 995 -5854 189 94 0 0 chr12 12645322 12645354 -131141101 + (CCCCCG)n Simple_repeat Simple_repeat 5 36 0 304 277 83 94 chr12 12645354 12645627 -131140828 + L1M2 LINE L1 995 1264 -5585 26 0 0 0 chr12 12645814 12645840 -131140615 + AT_rich Low_complexity Low_complexity 1 26 0 347 310 35 105 chr12 12646233 12646433 -131140022 + HAL1 LINE L1 19 204 -2303 189 94 0 0 chr12 12646659 12646691 -131139764 + (TC)n Simple_repeat Simple_repeat 1 32 0 590 248 129 0 chr12 12647037 12647239 -131139216 - MLT1G1 LTR MaLR -311 284 57 203 357 32 45 chr12 12650644 12650798 -131135657 - MER5A DNA MER1_type -5 184 33 331 296 16 0 chr12 12651342 12651482 -131134973 - L1M1 LINE L1 -316 5805 5676 1916 119 17 20 chr12 12652038 12652332 -131134123 - AluSg SINE Alu -17 293 1 256 287 238 0 chr12 12652372 12652473 -131133982 - MER5A DNA MER1_type -14 175 51 1002 199 139 96 chr12 12652528 12652631 -131133824 - MER110A LTR ERV1 0 491 394 2065 155 18 21 chr12 12652631 12652966 -131133489 - MER1B DNA MER1_type -3 334 1 3244 107 127 38 chr12 12652968 12653527 -131132928 + MER4B LTR ERV1 2 610 0 1002 199 139 96 chr12 12653527 12653904 -131132551 - MER110A LTR ERV1 -97 394 9 287 302 85 53 chr12 12654474 12654663 -131131792 - L2 LINE L2 -475 2839 2645 227 263 26 13 chr12 12654671 12654747 -131131708 - MLT1K LTR MaLR -3 585 509 235 228 87 22 chr12 12655018 12655110 -131131345 - MLT1J1 LTR MaLR -1 445 348 * 1176 278 59 16 chr12 12655105 12655476 -131130979 - MLT1J LTR MaLR -110 401 15 216 359 177 17 chr12 12655564 12655971 -131130484 - L2 LINE L2 -708 2606 2135 549 311 25 20 chr12 12706964 12707160 -131079295 + MIR3 SINE MIR 2 198 -10 660 274 72 27 chr12 12707766 12707989 -131078466 - MIR SINE MIR -14 248 16 184 316 116 0 chr12 12708530 12708625 -131077830 - L2 LINE L2 -12 3301 3196 1031 144 0 13 chr12 12710228 12710381 -131076074 + FRAM SINE Alu 14 164 -12 279 263 162 10 chr12 12711313 12711412 -131075043 + MIR SINE MIR 16 129 -79 2378 95 3 0 chr12 12712374 12712679 -131073776 + AluY SINE Alu 1 306 -5 36 0 0 0 chr12 12712770 12712806 -131073649 + AT_rich Low_complexity Low_complexity 1 36 0 237 294 98 0 chr12 12714812 12714904 -131071551 - L2 LINE L2 -4 3268 3168 458 264 24 32 chr12 12714950 12715075 -131071380 - L2 LINE L2 -9 3263 3140 827 173 0 0 chr12 12715874 12716007 -131070448 - FLAM_C SINE Alu 0 133 1 296 330 18 0 chr12 12716181 12716290 -131070165 + L1ME4a LINE L1 5554 5664 -457 287 265 109 0 chr12 12716352 12716419 -131070036 + L1ME4a LINE L1 5765 5823 -298 2528 62 0 7 chr12 12716419 12716727 -131069728 + AluY SINE Alu 1 306 -5 287 265 109 0 chr12 12716727 12716806 -131069649 + L1ME4a LINE L1 5823 5927 -194 243 246 68 25 chr12 12716813 12716931 -131069524 + L1ME4a LINE L1 5961 6083 -38 235 333 103 16 chr12 12717377 12717503 -131068952 + L2 LINE L2 3136 3272 0 407 335 29 0 chr12 12717567 12717737 -131068718 + MIR SINE MIR 76 250 -12 198 253 179 21 chr12 12717894 12717989 -131068466 + L2 LINE L2 3158 3267 -5 191 250 0 0 chr12 12719557 12719601 -131066854 + L2 LINE L2 3268 3311 -2 242 222 0 100 chr12 12719874 12719964 -131066491 - LTR67 LTR ERVL -13 544 464 461 347 89 8 chr12 12720655 12720903 -131065552 - L3 LINE CR1 -12 1565 1298 196 259 74 19 chr12 12720928 12720982 -131065473 + MIR SINE MIR 21 77 -185 541 291 171 27 chr12 12721117 12721409 -131065046 - L3 LINE CR1 -668 909 576 586 315 167 45 chr12 12722589 12723278 -131063177 - L2 LINE L2 -1116 2198 1426 266 44 0 44 chr12 12723291 12723336 -131063119 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 297 250 15 0 chr12 12723544 12723612 -131062843 - L2 LINE L2 -3 3269 3201 2117 70 9 98 chr12 12723612 12723939 -131062516 + AluSx SINE Alu 1 298 -14 696 268 80 77 chr12 12723957 12724172 -131062283 - L2 LINE L2 -312 3001 2785 1578 167 37 40 chr12 12724172 12724471 -131061984 - AluJo SINE Alu -14 298 1 696 268 80 77 chr12 12724471 12724679 -131061776 - L2 LINE L2 -528 2785 2579 * 1231 239 115 19 chr12 12724674 12725038 -131061417 + L2 LINE L2 2911 3309 -4 224 294 199 0 chr12 12726061 12726207 -131060248 + MIR3 SINE MIR 30 204 -4 208 185 0 111 chr12 12726440 12726494 -131059961 - MIR3 SINE MIR -17 191 144 1158 191 71 14 chr12 12726702 12727019 -131059436 + MER33 DNA MER1_type 1 324 0 319 279 23 0 chr12 12727063 12727149 -131059306 - MIR SINE MIR -116 146 59 3436 230 200 68 chr12 12728040 12728485 -131057970 - HAL1 LINE L1 -31 2476 2091 2074 99 0 4 chr12 12728485 12728786 -131057669 - AluSg SINE Alu 0 311 12 3436 230 200 68 chr12 12728786 12730146 -131056309 - HAL1 LINE L1 -416 2091 338 2205 103 13 10 chr12 12730146 12730446 -131056009 - AluSx SINE Alu -11 301 1 3436 230 200 68 chr12 12730446 12730794 -131055661 - HAL1 LINE L1 -2169 338 37 210 245 0 0 chr12 12731283 12731336 -131055119 + MER5B DNA MER1_type 2 54 -124 2442 88 0 0 chr12 12731875 12732170 -131054285 + AluSg SINE Alu 1 295 -15 21 0 0 0 chr12 12732538 12732559 -131053896 + AT_rich Low_complexity Low_complexity 1 21 0 575 229 28 0 chr12 12732632 12732776 -131053679 - MIR SINE MIR 0 262 115 200 226 38 113 chr12 12733007 12733113 -131053342 - MIR SINE MIR -140 122 25 22 0 0 0 chr12 12734653 12734675 -131051780 + AT_rich Low_complexity Low_complexity 1 22 0 619 260 62 10 chr12 12735209 12735401 -131051054 + MIR SINE MIR 53 254 -8 288 290 161 0 chr12 12735874 12735967 -131050488 - MIR SINE MIR -71 137 30 1122 162 0 57 chr12 12736228 12736456 -131049999 - AluJo SINE Alu 0 312 98 297 417 40 0 chr12 12737504 12737655 -131048800 - L2 LINE L2 -9 3263 3107 1020 178 51 14 chr12 12739231 12739445 -131047010 - AluJo SINE Alu -4 308 87 2105 156 92 21 chr12 12739742 12740165 -131046290 - L1MA8 LINE L1 -5 6286 5834 623 136 7 116 chr12 12740254 12740401 -131046054 + FLAM_A SINE Alu 1 131 -2 203 178 22 0 chr12 12743375 12743420 -131043035 + (CAT)n Simple_repeat Simple_repeat 2 47 0 412 273 83 0 chr12 12743555 12743676 -131042779 - L2 LINE L2 -4 3309 3179 924 296 25 15 chr12 12743712 12744189 -131042266 + L2 LINE L2 2670 3149 -164 738 245 53 67 chr12 12744621 12744903 -131041552 - HAL1 LINE L1 -2193 314 37 241 370 9 0 chr12 12745012 12745120 -131041335 - L2 LINE L2 -245 3027 2919 1468 167 84 57 chr12 12747829 12748164 -131038291 - MER2 DNA MER2_type 0 344 1 1950 145 0 7 chr12 12748348 12748645 -131037810 + AluJb SINE Alu 1 295 -17 240 342 0 26 chr12 12748695 12748850 -131037605 + GA-rich Low_complexity Low_complexity 3 153 0 2307 117 0 0 chr12 12749280 12749587 -131036868 - AluY SINE Alu -4 307 1 334 333 48 12 chr12 12750268 12750436 -131036019 - L3 LINE CR1 -16 1561 1388 432 249 193 5 chr12 12751154 12751351 -131035104 - MIR SINE MIR -6 256 23 195 129 0 0 chr12 12753050 12753081 -131033374 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 252 290 69 85 chr12 12754623 12754812 -131031643 - MIR SINE MIR -55 207 22 251 352 34 34 chr12 12754951 12755127 -131031328 + MIR SINE MIR 37 212 -50 192 308 115 0 chr12 12755531 12755635 -131030820 - L2 LINE L2 -347 2966 2851 2269 86 7 7 chr12 12755711 12756013 -131030442 - AluY SINE Alu -9 302 1 488 313 85 22 chr12 12756503 12756727 -131029728 + MIR SINE MIR 8 245 -17 2039 124 0 44 chr12 12757703 12758018 -131028437 + AluSx SINE Alu 1 301 -11 957 334 92 15 chr12 12758869 12759459 -131026996 + L2 LINE L2 2175 2809 -505 956 259 19 8 chr12 12759469 12759728 -131026727 - MIR SINE MIR 0 262 1 1926 250 65 41 chr12 12759750 12760549 -131025906 - L2 LINE L2 -2 3311 2459 2352 97 0 13 chr12 12760549 12760860 -131025595 + AluY SINE Alu 1 307 -4 1926 250 65 41 chr12 12760860 12761022 -131025433 - L2 LINE L2 -854 2459 2302 1570 148 23 66 chr12 12761023 12761327 -131025128 + AluJo SINE Alu 1 291 -21 2064 129 3 3 chr12 12762930 12763233 -131023222 - AluSg SINE Alu -7 303 1 2324 91 24 0 chr12 12763965 12764262 -131022193 + AluSx SINE Alu 1 304 -8 634 211 114 57 chr12 12764936 12765163 -131021292 - MLT1D LTR MaLR -258 247 8 180 216 0 0 chr12 12765170 12765207 -131021248 - MIR SINE MIR -173 89 53 1848 169 13 7 chr12 12765302 12765604 -131020851 - AluJo SINE Alu -8 304 1 378 0 0 0 chr12 12766539 12766581 -131019874 + (CA)n Simple_repeat Simple_repeat 1 42 0 695 180 29 35 chr12 12768282 12768454 -131018001 - MER96B DNA MER1_type? -246 171 1 598 285 72 8 chr12 12768740 12768975 -131017480 - MIR SINE MIR -8 254 5 205 200 44 0 chr12 12769868 12769913 -131016542 + MIR SINE MIR 85 131 -77 294 98 0 0 chr12 12770658 12770709 -131015746 + (TG)n Simple_repeat Simple_repeat 2 52 0 2151 120 3 0 chr12 12770709 12770993 -131015462 - AluSx SINE Alu -27 285 1 478 270 183 18 chr12 12771176 12771450 -131015005 - L1ME4a LINE L1 -265 5856 5538 590 371 62 14 chr12 12772177 12772597 -131013858 + L3 LINE CR1 427 866 -711 376 225 0 0 chr12 12772807 12772887 -131013568 - MIR SINE MIR -113 149 70 867 262 43 0 chr12 12773018 12773228 -131013227 + MIR SINE MIR 23 241 -21 243 157 0 19 chr12 12773340 12773394 -131013061 + MIR SINE MIR 102 153 -67 231 330 11 14 chr12 12773446 12773654 -131012801 + L3 LINE CR1 993 1254 -323 205 245 0 19 chr12 12773987 12774040 -131012415 + MIR SINE MIR 161 212 -50 537 249 30 0 chr12 12774311 12774470 -131011985 - MIR3 SINE MIR -30 178 12 892 176 96 59 chr12 12775291 12775530 -131010925 + MIR SINE MIR 3 250 -12 2045 184 73 14 chr12 12777286 12777780 -131008675 - Charlie1b DNA MER1_type 0 523 1 1977 162 0 0 chr12 12779067 12779364 -131007091 + AluJb SINE Alu 1 297 -15 2851 13 0 0 chr12 12781269 12781577 -131004878 + AluYa5 SINE Alu 1 308 -3 300 271 33 25 chr12 12781934 12782056 -131004399 + L2 LINE L2 3185 3307 -6 219 350 67 22 chr12 12782081 12782261 -131004194 - L2 LINE L2 -527 2787 2600 224 327 20 0 chr12 12782868 12782969 -131003486 + MIR3 SINE MIR 87 189 -19 2357 99 3 0 chr12 12784278 12784581 -131001874 - AluSc SINE Alu -5 304 1 2344 101 0 3 chr12 12785163 12785471 -131000984 + AluSg SINE Alu 1 307 -3 253 336 29 5 chr12 12785972 12786181 -131000274 + L1MC/D LINE L1 5586 5802 -344 1222 71 0 0 chr12 12786318 12786473 -130999982 - AluY SINE Alu -2 309 155 704 303 208 15 chr12 12786503 12787292 -130999163 - L2 LINE L2 -660 2654 1714 455 310 29 73 chr12 12787581 12787826 -130998629 - MIR SINE MIR -9 253 20 344 182 234 0 chr12 12788154 12788231 -130998224 - MER69 DNA AcHobo -1131 95 1 21 36 0 0 chr12 12788511 12788539 -130997916 + AT_rich Low_complexity Low_complexity 1 28 0 1889 146 7 4 chr12 12788564 12788867 -130997588 - AluJb SINE Alu 0 304 1 464 321 81 14 chr12 12788980 12789201 -130997254 + L3 LINE CR1 1230 1465 -112 219 69 0 0 chr12 12790002 12790031 -130996424 + (TGG)n Simple_repeat Simple_repeat 3 31 0 495 345 0 0 chr12 12790037 12790208 -130996247 - MIR SINE MIR -3 259 89 251 284 204 25 chr12 12790390 12790552 -130995903 - MIR SINE MIR -30 232 42 1936 158 0 0 chr12 12792360 12792651 -130993804 + AluJb SINE Alu 1 291 -21 200 267 0 0 chr12 12793117 12793162 -130993293 - L2 LINE L2 -5 3308 3264 3673 109 11 9 chr12 12793340 12793864 -130992591 - MER1A DNA MER1_type 0 527 3 2395 54 0 34 chr12 12794469 12794765 -130991690 + AluY SINE Alu 1 286 -25 285 146 0 0 chr12 12796406 12796454 -130990001 + (TAGG)n Simple_repeat Simple_repeat 1 48 0 311 259 0 0 chr12 12797002 12797087 -130989368 + MER94 DNA DNA 1 85 -49 334 269 94 20 chr12 12797185 12797334 -130989121 + MIR3 SINE MIR 33 192 -16 32 0 0 0 chr12 12797842 12797874 -130988581 + AT_rich Low_complexity Low_complexity 1 32 0 2702 55 0 0 chr12 12798579 12798890 -130987565 - AluY SINE Alu 0 311 1 824 253 66 12 chr12 12798912 12799153 -130987302 - MIR SINE MIR 0 262 9 503 276 69 0 chr12 12799835 12799980 -130986475 + MIR SINE MIR 39 193 -69 405 109 0 0 chr12 12799980 12800044 -130986411 + Alu SINE Alu 248 311 0 183 210 210 0 chr12 12800044 12800106 -130986349 + MIR SINE MIR 187 261 -1 504 110 99 0 chr12 12800163 12800254 -130986201 - L1MB2 LINE L1 -2 6169 6070 2474 128 73 14 chr12 12801831 12802270 -130984185 - MLT1C LTR MaLR 0 467 3 1098 213 84 60 chr12 12804229 12804418 -130982037 - L1MC5 LINE L1 -51 7910 7727 2610 57 0 0 chr12 12804418 12804718 -130981737 + AluY SINE Alu 1 300 -11 1098 213 84 60 chr12 12804718 12804946 -130981509 - L1MC5 LINE L1 -234 7727 7483 25 0 0 0 chr12 12805025 12805050 -130981405 + AT_rich Low_complexity Low_complexity 1 25 0 217 134 0 82 chr12 12805059 12805193 -130981262 + (TA)n Simple_repeat Simple_repeat 2 124 0 1358 255 89 57 chr12 12805203 12806014 -130980441 - L1MEc LINE L1 -4901 1495 659 440 308 71 16 chr12 12806486 12806668 -130979787 - L1MEc LINE L1 -5860 345 154 492 285 30 30 chr12 12806679 12806879 -130979576 - L1MC4a LINE L1 -1867 5941 5742 535 274 51 13 chr12 12807695 12807852 -130978603 + MIR SINE MIR 19 181 -81 1250 136 0 0 chr12 12807874 12808050 -130978405 - AluSg/x SINE Alu 0 312 137 207 228 0 18 chr12 12808094 12808151 -130978304 + (TTA)n Simple_repeat Simple_repeat 1 56 0 2500 70 0 0 chr12 12808403 12808705 -130977750 + AluY SINE Alu 1 302 -9 316 339 15 0 chr12 12810122 12810252 -130976203 - L2 LINE L2 -3 3310 3179 188 200 80 20 chr12 12810315 12810365 -130976090 - MIR SINE MIR -7 255 203 2293 72 31 7 chr12 12810647 12810939 -130975516 - AluY SINE Alu -12 299 1 351 265 22 81 chr12 12811115 12811300 -130975155 + L1MC5 LINE L1 7744 7917 -44 216 163 20 0 chr12 12811638 12811687 -130974768 - MIR SINE MIR -77 131 82 2214 113 13 7 chr12 12811944 12812245 -130974210 - AluSx SINE Alu -9 303 1 254 231 0 0 chr12 12812639 12812691 -130973764 + MIR3 SINE MIR 144 195 -13 194 318 80 40 chr12 12813318 12813469 -130972986 - L2 LINE L2 -213 3059 2903 2193 124 0 3 chr12 12813543 12813841 -130972614 + AluSx SINE Alu 1 297 -15 231 174 0 0 chr12 12813842 12813888 -130972567 + LTR66 LTR ERVL 394 439 -171 377 307 0 11 chr12 12813888 12814064 -130972391 + (TATATG)n Simple_repeat Simple_repeat 2 175 0 304 315 0 0 chr12 12814075 12814164 -130972291 + L1MC4 LINE L1 6615 6703 -1339 2076 17 12 0 chr12 12814242 12814483 -130971972 + L1PA4 LINE L1 5912 6155 0 1046 212 9 28 chr12 12815186 12815403 -130971052 + MER58A DNA MER1_type 12 224 0 248 203 62 16 chr12 12815709 12815773 -130970682 - L2 LINE L2 0 3313 3247 22 0 0 0 chr12 12816729 12816751 -130969704 + AT_rich Low_complexity Low_complexity 1 22 0 193 284 74 0 chr12 12817194 12817289 -130969166 + MIR SINE MIR 105 206 -56 875 171 82 0 chr12 12818316 12818486 -130967969 - MER20 DNA MER1_type 0 219 36 237 65 0 0 chr12 12819459 12819490 -130966965 + (A)n Simple_repeat Simple_repeat 1 31 0 1538 188 4 22 chr12 12820396 12820672 -130965783 - AluJo SINE Alu -41 271 1 1539 191 64 9 chr12 12820811 12821156 -130965299 - MLT1A1 LTR MaLR -1 364 1 477 326 62 4 chr12 12821829 12822056 -130964399 + MIR SINE MIR 23 262 0 306 330 31 0 chr12 12822091 12822188 -130964267 - MIR SINE MIR -84 178 79 211 171 0 24 chr12 12822370 12822411 -130964044 + MIR SINE MIR 85 124 -84 2445 96 0 3 chr12 12822712 12823025 -130963430 - AluSx SINE Alu 0 312 1 245 258 32 0 chr12 12823702 12823764 -130962691 + MIR3 SINE MIR 101 164 -44 841 239 35 31 chr12 12825826 12826081 -130960374 - MER112 DNA MER1_type 0 256 1 369 350 9 22 chr12 12826643 12826866 -130959589 + L2 LINE L2 2137 2356 -958 2586 75 0 0 chr12 12826897 12827204 -130959251 + AluSc SINE Alu 1 307 -2 995 104 6 49 chr12 12827807 12827823 -130958632 - AluJo/FRAM SINE Alu 0 312 297 1843 170 3 25 chr12 12827823 12828140 -130958315 - AluSx SINE Alu -2 310 1 995 104 6 49 chr12 12828140 12828286 -130958169 - AluJo/FRAM SINE Alu -15 297 157 398 117 0 17 chr12 12828302 12828362 -130958093 - MER46B DNA MER2_type 0 236 178 189 0 0 0 chr12 12829562 12829583 -130956872 + (T)n Simple_repeat Simple_repeat 1 21 0 1682 198 10 10 chr12 12829867 12830165 -130956290 - AluJo SINE Alu -14 298 1 216 0 0 0 chr12 12830796 12830820 -130955635 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 25 31 0 0 chr12 12830886 12830918 -130955537 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr12 12831653 12831677 -130954778 + (T)n Simple_repeat Simple_repeat 1 24 0 1408 156 27 136 chr12 12832975 12833380 -130953075 + MER46B DNA MER2_type 1 236 0 264 327 30 10 chr12 12834150 12834251 -130952204 - MIR SINE MIR -57 151 49 207 69 0 0 chr12 12834711 12834740 -130951715 + (A)n Simple_repeat Simple_repeat 1 29 0 27 0 0 0 chr12 12834806 12834833 -130951622 + AT_rich Low_complexity Low_complexity 1 27 0 753 174 49 0 chr12 12835689 12835833 -130950622 + MER5A DNA MER1_type 39 189 0 213 188 58 29 chr12 12836212 12836281 -130950174 + L3 LINE CR1 1435 1505 -72 316 195 12 37 chr12 12836427 12836446 -130950009 - MER5A DNA MER1_type -96 93 75 2524 77 3 0 chr12 12836446 12836756 -130949699 - AluY SINE Alu 0 311 1 316 195 12 37 chr12 12836756 12836818 -130949637 - MER5A DNA MER1_type -114 75 14 188 301 159 18 chr12 12837665 12837778 -130948677 + L2 LINE L2 3184 3312 -1 2262 156 63 20 chr12 12837782 12838408 -130948047 + L1ME1 LINE L1 5054 5700 -466 1913 149 10 10 chr12 12838408 12838704 -130947751 - AluJo SINE Alu -16 296 1 2262 156 63 20 chr12 12838704 12838725 -130947730 + L1ME1 LINE L1 5700 5719 -447 1690 170 21 3 chr12 12838726 12839008 -130947447 + AluJb SINE Alu 17 303 -9 1213 97 6 0 chr12 12839009 12839174 -130947281 + AluSg/x SINE Alu 135 300 -10 708 191 0 7 chr12 12839177 12839313 -130947142 + L1ME1 LINE L1 5730 5864 -302 904 259 23 0 chr12 12839314 12839577 -130946878 + L1MB7 LINE L1 5916 6184 0 2036 141 3 0 chr12 12840301 12840598 -130945857 + AluSg SINE Alu 1 298 -12 726 233 5 34 chr12 12841350 12841556 -130944899 + MIR SINE MIR 32 231 -31 211 246 16 0 chr12 12841746 12841807 -130944648 - MIR SINE MIR -56 152 91 2319 107 0 0 chr12 12842299 12842598 -130943857 - AluSq SINE Alu -14 299 1 261 291 13 13 chr12 12844141 12844220 -130942235 + MIR SINE MIR 20 98 -164 2109 127 6 13 chr12 12844499 12844813 -130941642 + AluJo SINE Alu 1 312 0 320 319 42 14 chr12 12844952 12845096 -130941359 - MIR SINE MIR -80 182 35 327 224 224 0 chr12 12846012 12846128 -130940327 - MIR3 SINE MIR -5 203 62 256 273 31 0 chr12 12846898 12847016 -130939439 + L1MEc LINE L1 1939 2020 -4195 1299 187 23 21 chr12 12847033 12847424 -130939031 + L1MEc LINE L1 2058 2457 -3758 322 313 135 60 chr12 12847735 12847898 -130938557 - L2 LINE L2 -4 3309 3160 1824 204 0 3 chr12 12847898 12848246 -130938209 - L1PB4 LINE L1 -3 6153 5807 322 313 135 60 chr12 12848246 12848498 -130937957 - L2 LINE L2 -153 3160 2863 45221 37 1 3 chr12 12848579 12854746 -130931709 + L1PA4 LINE L1 2 6152 -3 2344 75 0 10 chr12 12855944 12856237 -130930218 + AluY SINE Alu 1 290 -21 1750 173 0 23 chr12 12856496 12856796 -130929659 - AluJb SINE Alu -15 297 5 21 0 0 0 chr12 12856801 12856822 -130929633 + AT_rich Low_complexity Low_complexity 1 21 0 2508 68 3 0 chr12 12858256 12858564 -130927891 + AluY SINE Alu 1 309 -2 1268 114 0 0 chr12 12858565 12858731 -130927724 + AluSg/x SINE Alu 130 295 -17 495 140 30 10 chr12 12859141 12859241 -130927214 - L1MC1 LINE L1 -6 6327 6226 1979 106 4 29 chr12 12859241 12859515 -130926940 - AluSc SINE Alu -42 267 1 1024 61 15 0 chr12 12859540 12859671 -130926784 - AluY SINE Alu -3 308 176 273 261 17 61 chr12 12859672 12859787 -130926668 - MIR SINE MIR -112 150 41 21 0 0 0 chr12 12859882 12859903 -130926552 + AT_rich Low_complexity Low_complexity 1 21 0 340 219 67 62 chr12 12861063 12861241 -130925214 - L2 LINE L2 -1459 1855 1677 197 33 33 0 chr12 12861524 12861554 -130924901 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 192 283 0 0 chr12 12862494 12862547 -130923908 + L3 LINE CR1 1324 1376 -201 190 282 87 10 chr12 12863930 12864033 -130922422 - MIR SINE MIR -68 140 30 2300 112 3 0 chr12 12864384 12864687 -130921768 - AluSx SINE Alu -8 304 1 254 233 113 94 chr12 12864738 12864812 -130921643 + MIR SINE MIR 53 124 -138 1539 183 79 3 chr12 12864812 12865102 -130921353 - AluJo SINE Alu 0 312 1 254 233 113 94 chr12 12865102 12865186 -130921269 + MIR SINE MIR 124 214 -48 29 60 0 0 chr12 12865196 12865246 -130921209 + AT_rich Low_complexity Low_complexity 1 50 0 275 275 65 22 chr12 12866020 12866158 -130920297 - MIR SINE MIR -65 197 54 420 216 244 34 chr12 12867678 12868107 -130918348 + L2 LINE L2 2715 3238 -75 1220 164 100 74 chr12 12868408 12868645 -130917810 + MLT1A2 LTR MaLR 56 304 -70 2639 112 26 26 chr12 12868645 12869073 -130917382 + MSTA LTR MaLR 1 428 0 1220 164 100 74 chr12 12869073 12869146 -130917309 + MLT1A2 LTR MaLR 304 374 0 359 322 68 0 chr12 12869689 12869807 -130916648 + MER91A DNA MER1_type 44 169 -27 2185 129 12 26 chr12 12869915 12870257 -130916198 - MER1B DNA MER1_type 0 337 1 276 30 0 0 chr12 12870367 12870400 -130916055 + (CA)n Simple_repeat Simple_repeat 2 34 0 1840 154 0 4 chr12 12871881 12872161 -130914294 + AluJb SINE Alu 23 301 -11 239 293 124 25 chr12 12872161 12872403 -130914052 + L2 LINE L2 1710 1975 -1339 2496 53 0 23 chr12 12873352 12873655 -130912800 - AluY SINE Alu -15 296 1 249 336 109 14 chr12 12873802 12874022 -130912433 + MIR SINE MIR 20 260 -2 189 282 42 28 chr12 12874270 12874341 -130912114 + L2 LINE L2 3225 3296 -17 1954 171 0 0 chr12 12874470 12874779 -130911676 - AluJb SINE Alu -3 309 1 1666 194 57 27 chr12 12875023 12875394 -130911061 - MSTD LTR MaLR 0 396 15 440 304 15 7 chr12 12875770 12875905 -130910550 - MLT2F LTR ERVL -527 136 1 344 303 42 0 chr12 12875973 12876115 -130910340 - L1MC4 LINE L1 -701 7341 7194 4008 183 38 75 chr12 12876137 12877794 -130908661 - L1MC3 LINE L1 -6 6327 5316 410 209 104 41 chr12 12877795 12878015 -130908440 - Charlie7 DNA MER1_type -66 2546 2313 1235 149 45 33 chr12 12878016 12878258 -130908197 - L1MA4A LINE L1 0 6303 6059 10992 31 0 1 chr12 12878258 12879555 -130906900 - L1PA2 LINE L1 -1646 4500 3205 7844 19 6 0 chr12 12879553 12881196 -130905259 + L1PA2 LINE L1 4507 6154 -1 231 167 15 15 chr12 12881196 12881262 -130905193 - L1MA4A LINE L1 -235 6068 6003 3822 240 35 29 chr12 12881282 12882493 -130903962 - L1MC3 LINE L1 -850 5296 4078 2478 236 12 49 chr12 12882564 12883091 -130903364 - L1MC4a LINE L1 -1741 6067 5571 2370 103 3 0 chr12 12883091 12883393 -130903062 - AluSq SINE Alu -10 303 1 2478 236 12 49 chr12 12883393 12883584 -130902871 - L1MC4a LINE L1 -2237 5571 5375 262 282 89 32 chr12 12883590 12883714 -130902741 + L2 LINE L2 2591 2721 -593 364 337 84 70 chr12 12883873 12884217 -130902238 + L2 LINE L2 2924 3272 0 195 313 0 15 chr12 12884410 12884477 -130901978 - MIR3 SINE MIR 0 208 143 2372 113 0 0 chr12 12884653 12884962 -130901493 + AluSq SINE Alu 1 309 -4 464 307 99 65 chr12 12885624 12886149 -130900306 - L2 LINE L2 -43 3270 2708 773 183 8 0 chr12 12886149 12886280 -130900175 - FLAM_C SINE Alu -1 132 1 464 307 99 65 chr12 12886280 12886554 -130899901 - L2 LINE L2 -605 2708 2445 21 36 0 0 chr12 12886588 12886616 -130899839 + AT_rich Low_complexity Low_complexity 1 28 0 1489 179 61 32 chr12 12886619 12886899 -130899556 + AluJo SINE Alu 1 288 -24 365 304 64 12 chr12 12886927 12887098 -130899357 - HAL1 LINE L1 -19 2488 2309 356 267 29 9 chr12 12887094 12887199 -130899256 - HAL1 LINE L1 -1637 870 764 * 2132 168 24 40 chr12 12887900 12888353 -130898102 + L1MB3 LINE L1 5738 6183 0 242 290 7 43 chr12 12888521 12888659 -130897796 + GA-rich Low_complexity Low_complexity 2 134 0 2225 213 48 10 chr12 12889216 12889719 -130896736 + MLT1G LTR MaLR 69 590 0 303 28 0 0 chr12 12889819 12889855 -130896600 + (TA)n Simple_repeat Simple_repeat 1 36 0 662 56 0 0 chr12 12889865 12889954 -130896501 - Alu SINE Alu 0 309 221 365 279 109 18 chr12 12889994 12890159 -130896296 - L1MC4a LINE L1 -1907 5901 5722 604 237 113 66 chr12 12890175 12890449 -130896006 - L1MC4a LINE L1 -2177 5631 5345 4214 181 5 50 chr12 12890456 12890867 -130895588 - L1 LINE L1 -1134 5012 4584 241 35 0 0 chr12 12890867 12890896 -130895559 + U6 snRNA snRNA 2 30 -77 4214 181 5 50 chr12 12890896 12891385 -130895070 - L1 LINE L1 -1562 4584 4125 280 256 23 0 chr12 12891394 12891480 -130894975 - L1MC4a LINE L1 -2467 5341 5254 289 241 44 84 chr12 12891627 12891813 -130894642 - MLT1J LTR MaLR 0 564 362 251 271 29 14 chr12 12891922 12891992 -130894463 - MLT1J LTR MaLR -331 180 110 474 291 115 36 chr12 12892159 12892935 -130893520 - L1MC4a LINE L1 -1072 5074 4238 2253 98 0 0 chr12 12893194 12893480 -130892975 - AluSx SINE Alu -12 300 15 6421 162 26 50 chr12 12895619 12897331 -130889124 + L1MC1 LINE L1 4677 6327 -6 993 112 0 41 chr12 12897741 12897910 -130888545 - AluSg/x SINE Alu -17 295 134 2415 71 3 0 chr12 12897910 12898207 -130888248 - AluY SINE Alu -13 298 1 3058 164 20 63 chr12 12899250 12899889 -130886566 + LTR9 LTR ERV1 1 612 0 1777 175 0 13 chr12 12901604 12901907 -130884548 - AluJo SINE Alu -5 307 9 2670 27 3 3 chr12 12902842 12903143 -130883312 - AluY SINE Alu -10 301 1 1157 103 0 0 chr12 12903143 12903289 -130883166 - AluSq/x SINE Alu -167 146 1 358 265 10 10 chr12 12904651 12904749 -130881706 + MER5B DNA MER1_type 81 178 0 21 0 0 0 chr12 12906153 12906174 -130880281 + AT_rich Low_complexity Low_complexity 1 21 0 189 287 277 0 chr12 12906739 12906833 -130879622 - L2 LINE L2 -7 3265 3146 383 249 55 55 chr12 12906865 12907030 -130879425 + MIR SINE MIR 13 177 -85 1776 154 44 17 chr12 12907030 12907328 -130879127 - AluJb SINE Alu -6 306 1 2384 110 0 0 chr12 12907342 12907651 -130878804 - AluSx SINE Alu 0 312 4 804 152 8 0 chr12 12907689 12907814 -130878641 - FLAM_C SINE Alu -7 126 1 284 272 136 14 chr12 12909041 12909188 -130877267 - L3 LINE CR1 -3 1574 1410 349 340 84 70 chr12 12910639 12910983 -130875472 + L2 LINE L2 2924 3272 0 195 313 0 15 chr12 12911176 12911243 -130875212 - MIR3 SINE MIR 0 208 143 2372 113 0 0 chr12 12911419 12911728 -130874727 + AluSq SINE Alu 1 309 -4 464 308 92 66 chr12 12912387 12912912 -130873543 - L2 LINE L2 -43 3270 2710 753 191 8 0 chr12 12912912 12913043 -130873412 - FLAM_C SINE Alu -1 132 1 464 308 92 66 chr12 12913043 12913317 -130873138 - L2 LINE L2 -603 2710 2445 21 36 0 0 chr12 12913351 12913379 -130873076 + AT_rich Low_complexity Low_complexity 1 28 0 1595 161 65 24 chr12 12913382 12913674 -130872781 + AluJo SINE Alu 1 304 -8 1945 226 73 18 chr12 12913677 12914169 -130872286 - LTR40a LTR ERVL 0 519 1 860 164 26 20 chr12 12914504 12914656 -130871799 + FRAM SINE Alu 1 153 -13 185 183 402 0 chr12 12915579 12915661 -130870794 - L2 LINE L2 -2 3270 3156 2424 66 7 7 chr12 12916183 12916487 -130869968 - AluY SINE Alu -5 306 3 2249 118 0 3 chr12 12917318 12917623 -130868832 + AluSx SINE Alu 2 305 -7 1324 171 69 104 chr12 12917635 12917676 -130868779 + MLT1B LTR MaLR 1 42 -348 2338 82 7 0 chr12 12917676 12917968 -130868487 + AluSp SINE Alu 1 294 -19 1324 171 69 104 chr12 12917968 12918330 -130868125 + MLT1B LTR MaLR 42 390 0 3402 161 91 18 chr12 12919421 12919517 -130866938 - MER21B LTR ERV1 -85 778 690 3545 111 45 0 chr12 12919517 12919609 -130866846 - MER41A LTR ERV1 0 554 468 2528 31 3 3 chr12 12919609 12919900 -130866555 + AluY SINE Alu 1 291 -20 3545 111 45 0 chr12 12919900 12920337 -130866118 - MER41A LTR ERV1 -86 468 1 3402 161 91 18 chr12 12920337 12920910 -130865545 - MER21B LTR ERV1 -173 690 60 2470 74 0 0 chr12 12920911 12921208 -130865247 + AluY SINE Alu 1 297 -14 1732 189 46 19 chr12 12922127 12922544 -130863911 + MSTA LTR MaLR 1 428 0 363 243 139 28 chr12 12922544 12922688 -130863767 + MIR SINE MIR 77 236 -26 193 109 87 43 chr12 12922938 12922984 -130863471 - L2 LINE L2 0 3313 3266 1970 153 3 0 chr12 12923575 12923883 -130862572 + AluJb SINE Alu 1 309 -3 3236 141 34 25 chr12 12923983 12924256 -130862199 - MER7C DNA MER2_type -2426 602 333 2605 68 0 0 chr12 12924256 12924566 -130861889 + AluY SINE Alu 1 310 -1 3236 141 34 25 chr12 12924566 12924889 -130861566 - MER7C DNA MER2_type -2695 333 1 795 220 0 12 chr12 12925178 12925351 -130861104 + MER5B DNA MER1_type 7 177 -1 591 214 16 0 chr12 12925525 12925651 -130860804 + MER5A DNA MER1_type 2 129 -60 2508 77 0 0 chr12 12926501 12926812 -130859643 - AluY SINE Alu 0 311 1 460 252 27 41 chr12 12927053 12927200 -130859255 - MLT1J LTR MaLR -6 505 361 1926 152 7 10 chr12 12927211 12927514 -130858941 + AluSx SINE Alu 1 302 -10 654 262 120 75 chr12 12928057 12928500 -130857955 + HAL1 LINE L1 1 463 -2044 1750 173 0 23 chr12 12929649 12929949 -130856506 + AluJb SINE Alu 5 297 -15 2144 86 7 20 chr12 12930212 12930504 -130855951 - AluY SINE Alu -23 288 1 298 183 183 25 chr12 12930665 12930785 -130855670 - MER69 DNA AcHobo -10 2516 2378 1531 165 26 0 chr12 12930926 12931198 -130855257 + L1MC3 LINE L1 7500 7778 -7 642 253 96 76 chr12 12931212 12931570 -130854885 - L1M3 LINE L1 -515 5665 5289 368 201 49 69 chr12 12931684 12931828 -130854627 - L1ME4a LINE L1 -18 6103 5963 376 190 190 7 chr12 12931866 12931936 -130854519 + L1MA8 LINE L1 6121 6177 -114 1904 154 3 13 chr12 12931936 12932241 -130854214 - AluJo SINE Alu -10 302 1 376 190 190 7 chr12 12932241 12932312 -130854143 + L1MA8 LINE L1 6177 6288 -3 936 244 34 15 chr12 12932476 12932742 -130853713 + HsTC2c DNA Tc2 2 272 -457 518 251 240 0 chr12 12932751 12932930 -130853525 + HsTC2c DNA Tc2 508 729 0 1737 155 8 0 chr12 12933251 12933509 -130852946 - AluSq SINE Alu -53 260 1 4119 157 48 28 chr12 12933535 12934426 -130852029 - L1MDa LINE L1 -4152 2388 1480 748 251 69 0 chr12 12934422 12934597 -130851858 - L1MDa LINE L1 -5765 775 589 * 2053 110 13 23 chr12 12935011 12935321 -130851134 + AluSx SINE Alu 1 307 -5 522 65 54 21 chr12 12935503 12935596 -130850859 + L1MD1 LINE L1 6147 6242 0 395 214 22 129 chr12 12935653 12935831 -130850624 - MLT1H LTR MaLR -165 384 226 1764 123 0 4 chr12 12935845 12936087 -130850368 + AluSx SINE Alu 5 245 -67 2206 119 0 10 chr12 12936087 12936399 -130850056 + AluSx SINE Alu 1 309 -3 439 233 99 80 chr12 12936476 12936702 -130849753 + MLT1L LTR MaLR 101 397 -203 198 0 0 0 chr12 12936784 12936806 -130849649 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 333 260 47 8 chr12 12936873 12937000 -130849455 + HAL1 LINE L1 1185 1316 -1191 1310 151 33 174 chr12 12937034 12937191 -130849264 - MLT1A2 LTR MaLR 0 374 196 2379 96 0 0 chr12 12937191 12937492 -130848963 - AluSc SINE Alu -8 301 1 1310 151 33 174 chr12 12937492 12937758 -130848697 - MLT1A2 LTR MaLR -178 196 11 252 297 16 0 chr12 12938491 12938583 -130847872 + MIR SINE MIR 48 144 -64 938 278 80 91 chr12 12938602 12939025 -130847430 + L1MEc LINE L1 37 463 -5933 2013 145 0 16 chr12 12939025 12939328 -130847127 + AluJo SINE Alu 1 298 -14 938 278 80 91 chr12 12939328 12939904 -130846551 + L1MEc LINE L1 463 1018 -5378 1941 123 3 27 chr12 12939904 12940196 -130846259 + AluSx SINE Alu 3 287 -25 938 278 80 91 chr12 12940196 12940651 -130845804 + L1MEc LINE L1 1018 1476 -4920 21 36 0 0 chr12 12941041 12941069 -130845386 + AT_rich Low_complexity Low_complexity 1 28 0 188 277 31 0 chr12 12941770 12941835 -130844620 - L2 LINE L2 -556 2758 2692 324 343 37 8 chr12 12942133 12942267 -130844188 + MIR SINE MIR 47 184 -78 1759 159 27 10 chr12 12942365 12942660 -130843795 - AluJo SINE Alu -12 300 1 240 277 38 0 chr12 12942936 12943037 -130843418 + MIR SINE MIR 60 142 -66 1483 150 116 45 chr12 12943489 12943870 -130842585 - MER69 DNA AcHobo -635 1891 1484 1354 131 0 70 chr12 12944174 12944229 -130842226 + AluJb SINE Alu 82 139 -173 2066 108 0 59 chr12 12944229 12944535 -130841920 + AluSx SINE Alu 1 288 -24 1354 131 0 70 chr12 12944535 12944708 -130841747 + AluJb SINE Alu 139 294 -18 2891 121 5 2 chr12 12945090 12945513 -130840942 + MER41B LTR ERV1 1 424 -211 1412 101 0 0 chr12 12945613 12945792 -130840663 - AluSx SINE Alu -121 191 13 662 139 37 0 chr12 12945805 12945913 -130840542 + MER41A LTR ERV1 443 554 0 225 264 35 11 chr12 12945929 12946016 -130840439 + MIR SINE MIR 70 158 -104 288 0 0 0 chr12 12946285 12946317 -130840138 + (CA)n Simple_repeat Simple_repeat 2 33 0 1428 149 0 2 chr12 12946507 12946750 -130839705 - AluJb SINE Alu -26 286 1 246 245 19 0 chr12 12946750 12946803 -130839652 + MER21B LTR ERV1 18 71 -792 2042 141 3 6 chr12 12946803 12947116 -130839339 - AluSx SINE Alu 0 312 1 736 256 46 15 chr12 12947137 12947399 -130839056 - L1MCc LINE L1 -6129 294 25 4735 185 26 13 chr12 12947769 12948958 -130837497 - L1MB8 LINE L1 -17 6161 4960 1230 172 86 81 chr12 12948958 12949330 -130837125 + MLT1A2 LTR MaLR 1 374 0 4735 185 26 13 chr12 12949330 12949426 -130837029 - L1MB8 LINE L1 -1218 4960 4867 17289 28 0 0 chr12 12950439 12952457 -130833998 - L1P LINE L1 -924 5222 3205 6380 24 1 0 chr12 12952455 12953199 -130833256 + L1P LINE L1 4507 5251 -895 * 789 116 8 0 chr12 12953299 12953420 -130833035 + AluSp/q SINE Alu 191 312 -1 1707 153 80 0 chr12 12953433 12953720 -130832735 + AluSg SINE Alu 1 310 0 692 194 0 22 chr12 12953888 12954022 -130832433 + AluJo SINE Alu 6 136 -176 1638 130 119 4 chr12 12954087 12954364 -130832091 + AluSx SINE Alu 1 309 -3 367 193 44 61 chr12 12954365 12954479 -130831976 - L1MEc LINE L1 -6242 154 43 228 325 39 132 chr12 12954595 12955026 -130831429 - L2 LINE L2 -35 3237 2847 2198 103 0 17 chr12 12955059 12955361 -130831094 + AluY SINE Alu 1 297 -14 34 24 0 0 chr12 12957164 12957205 -130829250 + AT_rich Low_complexity Low_complexity 1 41 0 1780 136 15 11 chr12 12957211 12957484 -130828971 - AluSx SINE Alu -38 274 1 378 236 11 0 chr12 12958701 12958790 -130827665 + MIR SINE MIR 36 125 -83 4711 125 45 37 chr12 12959303 12960148 -130826307 - L1MA8 LINE L1 -25 6266 5415 267 133 0 0 chr12 12961041 12961086 -130825369 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 1734 178 0 25 chr12 12961089 12961409 -130825046 - AluJb SINE Alu 0 312 1 1026 111 0 0 chr12 12961409 12961544 -130824911 - AluJb SINE Alu -177 135 1 360 209 8 23 chr12 12961550 12961679 -130824776 + CT-rich Low_complexity Low_complexity 4 130 0 183 368 53 0 chr12 12963296 12963391 -130823064 - L3 LINE CR1 -20 1557 1458 231 340 38 19 chr12 12963465 12963571 -130822884 + L2 LINE L2 3133 3240 -32 437 264 132 9 chr12 12963580 12963792 -130822663 - L3 LINE CR1 -161 1416 1179 218 299 117 13 chr12 12963793 12963870 -130822585 - L3 LINE CR1 -364 1213 1129 784 292 10 5 chr12 12964103 12964312 -130822143 + MLT1J LTR MaLR 2 211 -300 243 203 174 0 chr12 12964453 12964500 -130821955 + MLT1J LTR MaLR 423 461 -50 228 86 0 0 chr12 12964500 12964535 -130821920 + (TTG)n Simple_repeat Simple_repeat 3 37 0 243 203 174 0 chr12 12964535 12964556 -130821899 + MLT1J LTR MaLR 461 503 -8 30 0 0 0 chr12 12966260 12966290 -130820165 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr12 12966614 12966642 -130819813 + AT_rich Low_complexity Low_complexity 1 28 0 229 307 40 0 chr12 12967324 12967399 -130819056 + MER5B DNA MER1_type 1 78 -100 2197 136 0 3 chr12 12967403 12967711 -130818744 - AluSx SINE Alu -5 307 1 214 169 17 68 chr12 12967815 12967874 -130818581 + MIR SINE MIR 47 102 -160 426 39 0 0 chr12 12968830 12968882 -130817573 + (TG)n Simple_repeat Simple_repeat 2 53 0 398 205 25 98 chr12 12969680 12969802 -130816653 - MLT1J LTR MaLR -175 336 224 779 163 31 0 chr12 12969850 12969979 -130816476 - AluJo SINE Alu -178 134 2 385 242 165 28 chr12 12969985 12970167 -130816288 - MLT1J LTR MaLR -295 216 10 1631 129 3 45 chr12 12970533 12970819 -130815636 + AluSx SINE Alu 23 296 -16 599 281 39 20 chr12 12971883 12972086 -130814369 - MER63A DNA MER1_type -2 208 2 2537 160 71 23 chr12 12973509 12974029 -130812426 - L1MB7 LINE L1 -13 6171 5627 2399 78 0 16 chr12 12974038 12974347 -130812108 - AluY SINE Alu -7 304 1 2309 104 0 0 chr12 12974834 12975132 -130811323 - AluSx SINE Alu -14 298 1 376 259 62 9 chr12 12975265 12975377 -130811078 - MIR SINE MIR -109 153 36 520 245 170 0 chr12 12975385 12975544 -130810911 + MER5A DNA MER1_type 4 189 0 668 263 76 8 chr12 12975934 12976170 -130810285 - MIR SINE MIR -9 253 2 278 263 0 66 chr12 12976926 12977063 -130809392 + HERVH LTR ERV1 2868 2995 -4718 * 886 149 20 0 chr12 12977042 12977190 -130809265 + HERVH LTR ERV1 3140 3290 -4423 * 3461 100 6 6 chr12 12977180 12977682 -130808773 + HERVH LTR ERV1 3492 3993 -3720 2190 116 0 3 chr12 12977684 12977986 -130808469 + HERVH LTR ERV1 4488 4788 -2925 703 235 61 15 chr12 12978635 12978831 -130807624 - MIR SINE MIR -49 213 9 1930 173 99 15 chr12 12978866 12979259 -130807196 + MSTB LTR MaLR 1 426 0 196 206 309 0 chr12 12979386 12979423 -130807032 + MIR SINE MIR 161 249 -13 199 161 0 0 chr12 12979423 12979454 -130807001 + L2 LINE L2 3223 3253 -19 280 256 23 0 chr12 12980623 12980709 -130805746 + L1M LINE L1 5254 5341 -2467 4175 181 5 50 chr12 12980718 12981207 -130805248 + L1 LINE L1 4125 4584 -1562 242 35 0 0 chr12 12981207 12981236 -130805219 - U6 snRNA snRNA -77 30 2 4175 181 5 50 chr12 12981236 12981647 -130804808 + L1 LINE L1 4584 5012 -1134 321 225 7 35 chr12 12981803 12981945 -130804510 + CT-rich Low_complexity Low_complexity 4 141 0 354 262 8 40 chr12 12981990 12982116 -130804339 + CT-rich Low_complexity Low_complexity 4 125 0 396 0 0 0 chr12 12982309 12982353 -130804102 + (TG)n Simple_repeat Simple_repeat 2 45 0 2753 264 102 18 chr12 12982398 12983566 -130802889 - L1MEc LINE L1 -4736 1479 229 223 283 0 0 chr12 12984682 12984742 -130801713 + MIR SINE MIR 175 234 -28 420 292 124 22 chr12 12985263 12985441 -130801014 - MIR SINE MIR -11 251 56 1799 151 10 17 chr12 12985523 12985821 -130800634 + AluJo SINE Alu 1 296 -16 1004 242 109 8 chr12 12986946 12987202 -130799253 - MER58 DNA MER1_type -2138 282 1 207 286 16 0 chr12 12987202 12987265 -130799190 - MIR3 SINE MIR -48 160 97 853 102 16 16 chr12 12987788 12987916 -130798539 - AluSq/x SINE Alu -184 129 2 3144 128 11 78 chr12 12988006 12988631 -130797824 - L1MA9 LINE L1 -5 6307 5725 438 262 101 13 chr12 12989452 12989601 -130796854 + MIR SINE MIR 31 192 -70 304 148 2 0 chr12 12989845 12989892 -130796563 + Alu SINE Alu 1 42 -260 21 0 0 0 chr12 12989992 12990013 -130796442 + AT_rich Low_complexity Low_complexity 1 21 0 216 197 14 70 chr12 12990019 12990090 -130796365 + GA-rich Low_complexity Low_complexity 1 67 0 374 222 120 8 chr12 12990992 12991048 -130795407 - MLT1H LTR MaLR -13 536 488 1993 134 10 0 chr12 12991048 12991355 -130795100 + AluSp SINE Alu 2 311 -2 374 222 120 8 chr12 12991355 12991415 -130795040 - MLT1H LTR MaLR -61 488 407 6596 120 38 1 chr12 12992070 12993210 -130793245 + L1MA5A LINE L1 5114 6294 -3 303 125 0 0 chr12 12993214 12993262 -130793193 + L1MC3 LINE L1 7461 7508 -277 432 187 0 0 chr12 12993274 12993349 -130793106 + AluJo SINE Alu 2 76 -236 1605 185 23 3 chr12 12993891 12994194 -130792261 + AluJo SINE Alu 1 309 -3 378 62 250 0 chr12 12994307 12994371 -130792084 + MADE1 DNA Mariner 1 80 0 229 272 103 15 chr12 12994462 12994598 -130791857 + L1ME LINE L1 5691 5838 -283 923 174 58 29 chr12 12994613 12994820 -130791635 + AluJo SINE Alu 86 298 -14 572 126 102 0 chr12 12994905 12995032 -130791423 + AluY SINE Alu 2 141 -170 7630 22 10 0 chr12 12995132 12996057 -130790398 + L1PA4 LINE L1 5221 6155 0 5502 111 35 1 chr12 12996757 12997577 -130788878 - HERVH LTR ERV1 -5604 2109 1262 32 43 0 0 chr12 12997591 12997637 -130788818 + GC_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr12 12997651 12997673 -130788782 + GC_rich Low_complexity Low_complexity 1 22 0 4167 134 18 5 chr12 12998087 12998751 -130787704 + L1MA7 LINE L1 5619 6291 0 187 299 221 8 chr12 12999167 12999294 -130787161 + L3 LINE CR1 1198 1351 -226 1832 148 0 3 chr12 12999449 12999747 -130786708 + AluSx SINE Alu 1 297 -15 235 163 0 23 chr12 12999770 12999813 -130786642 - MER34B LTR ERV1 -466 99 58 1807 108 7 49 chr12 13000122 13000428 -130786027 - AluJb SINE Alu -19 293 1 235 325 26 0 chr12 13000479 13000556 -130785899 + MIR SINE MIR 1 79 -183 1713 195 142 14 chr12 13000680 13001110 -130785345 - MER31A LTR ERV1 0 485 1 1265 193 0 0 chr12 13001841 13002059 -130784396 + HERVH LTR ERV1 4932 5149 -2564 1413 126 23 0 chr12 13002060 13002275 -130784180 + HERVH LTR ERV1 5600 5819 -1894 * 2440 90 50 13 chr12 13002273 13002651 -130783804 + HERVH LTR ERV1 7322 7713 0 2120 115 154 5 chr12 13002651 13003041 -130783414 + LTR7 LTR ERV1 1 448 -2 358 206 18 13 chr12 13003043 13003140 -130783315 - AluS SINE Alu -229 74 3 2315 38 41 7 chr12 13004065 13004358 -130782097 + AluY SINE Alu 1 303 -8 366 324 103 79 chr12 13004660 13005067 -130781388 - L2 LINE L2 0 3313 2897 472 122 22 22 chr12 13005732 13005822 -130780633 - Tigger2 DNA MER2_type -356 2362 2273 462 152 0 0 chr12 13005813 13005879 -130780576 - Tigger2 DNA MER2_type -2651 67 2 * 408 311 37 0 chr12 13006064 13006199 -130780256 + MIR SINE MIR 110 249 -13 2242 76 3 3 chr12 13006282 13006584 -130779871 + AluSg SINE Alu 3 304 -6 314 402 0 27 chr12 13006869 13007053 -130779402 + C-rich Low_complexity Low_complexity 2 180 0 272 308 15 0 chr12 13007061 13007126 -130779329 + polypyrimidine Low_complexity Low_complexity 6 71 0 381 167 45 0 chr12 13007268 13007334 -130779121 + AluS SINE Alu 1 69 -239 1211 229 14 32 chr12 13007400 13007771 -130778684 - L1M4 LINE L1 -3417 2729 2366 2039 101 0 49 chr12 13009115 13009423 -130777032 + AluSg SINE Alu 1 293 -17 208 273 0 18 chr12 13009535 13009590 -130776865 - L3 LINE CR1 -655 922 869 23 68 0 0 chr12 13009780 13009824 -130776631 + GC_rich Low_complexity Low_complexity 1 44 0 321 281 0 0 chr12 13009886 13010020 -130776435 + C-rich Low_complexity Low_complexity 1 134 0 297 186 0 0 chr12 13010124 13010194 -130776261 + C-rich Low_complexity Low_complexity 1 70 0 1891 112 17 10 chr12 13010472 13010766 -130775689 - AluSx SINE Alu -14 298 3 709 157 7 82 chr12 13010779 13010926 -130775529 - FLAM_C SINE Alu -6 137 2 392 353 12 42 chr12 13011612 13011779 -130774676 - L3 LINE CR1 -107 1470 1309 2142 81 7 3 chr12 13011956 13012251 -130774204 + AluSx SINE Alu 1 296 -16 2829 176 36 6 chr12 13012655 13012691 -130773764 - MLT2B2 LTR ERVL 0 515 482 255 31 0 0 chr12 13012691 13012723 -130773732 + (CA)n Simple_repeat Simple_repeat 1 32 0 2829 176 36 6 chr12 13012723 13013186 -130773269 - MLT2B2 LTR ERVL -33 482 1 435 317 109 25 chr12 13013265 13013587 -130772868 + MLT1K LTR MaLR 238 586 -2 1276 62 17 0 chr12 13013894 13014072 -130772383 + L1P LINE L1 4323 4503 -1643 1211 153 45 33 chr12 13014072 13014311 -130772144 + L1MA4A LINE L1 6059 6303 0 269 234 99 45 chr12 13014312 13014534 -130771921 + Charlie7 DNA MER1_type 2313 2546 -66 534 233 44 28 chr12 13014535 13014781 -130771674 + L1MC/D LINE L1 5316 5528 -816 1704 143 80 0 chr12 13015286 13015627 -130770828 + AluSx SINE Alu 1 364 0 645 94 21 10 chr12 13115664 13115760 -130670695 - AluY SINE Alu -14 297 201 195 146 0 0 chr12 13116760 13116801 -130669654 + (CA)n Simple_repeat Simple_repeat 1 41 0 310 336 62 62 chr12 13117508 13117734 -130668721 + L1MEc LINE L1 2034 2259 -4137 564 220 9 17 chr12 13132687 13132918 -130653537 + GA-rich Low_complexity Low_complexity 1 229 0 21 57 0 0 chr12 13133166 13133201 -130653254 + GC_rich Low_complexity Low_complexity 1 35 0 192 125 0 0 chr12 13133744 13133776 -130652679 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 * 302 238 100 0 chr12 13133761 13133841 -130652614 - L2 LINE L2 -1 3271 3184 1897 154 0 22 chr12 13134181 13134500 -130651955 - AluJb SINE Alu 0 312 1 2049 80 30 0 chr12 13135754 13136054 -130650401 - AluSc SINE Alu 0 309 1 287 103 0 17 chr12 13139252 13139310 -130647145 + (TTTG)n Simple_repeat Simple_repeat 4 60 0 2358 98 0 0 chr12 13141542 13141848 -130644607 - AluSq SINE Alu -7 306 1 926 233 70 15 chr12 13142628 13142898 -130643557 + MLT1J2 LTR MaLR 4 288 -162 2161 102 0 16 chr12 13142962 13143265 -130643190 + AluSq SINE Alu 1 298 -15 483 63 0 0 chr12 13143316 13143379 -130643076 + (TTCC)n Simple_repeat Simple_repeat 1 63 0 1099 156 11 0 chr12 13143380 13143560 -130642895 - AluSg/x SINE Alu -4 308 127 207 262 0 68 chr12 13144324 13144427 -130642028 + CT-rich Low_complexity Low_complexity 1 96 0 1878 140 0 7 chr12 13144444 13144729 -130641726 - AluSq SINE Alu -30 283 1 245 257 71 0 chr12 13146222 13146292 -130640163 - MER91B DNA MER1_type 0 190 116 277 281 60 108 chr12 13146297 13146464 -130639991 - MER91A DNA MER1_type -36 160 2 449 173 64 5 chr12 13149212 13149419 -130637036 - L1MC3 LINE L1 -336 7659 7188 235 307 11 11 chr12 13149422 13149510 -130636945 - MLT1F1 LTR MaLR -445 122 35 1084 145 69 34 chr12 13149510 13149772 -130636683 - L1MC3 LINE L1 -688 7097 6827 456 149 14 0 chr12 13149779 13149853 -130636602 + AluJ/FRAM SINE Alu 220 294 -18 722 108 47 93 chr12 13149930 13150059 -130636396 - FLAM_A SINE Alu -7 126 4 2192 91 7 0 chr12 13150102 13150398 -130636057 - AluSx SINE Alu -14 298 1 901 107 0 0 chr12 13151055 13151177 -130635278 - AluSq/x SINE Alu -190 122 1 234 316 51 0 chr12 13151242 13151321 -130635134 + MIR SINE MIR 82 164 -98 864 157 0 0 chr12 13151369 13151503 -130634952 + FLAM_C SINE Alu 7 140 -3 1695 132 7 37 chr12 13151513 13151808 -130634647 + AluJb SINE Alu 9 294 -18 288 77 0 0 chr12 13152033 13152072 -130634383 + (TG)n Simple_repeat Simple_repeat 2 40 0 195 42 0 0 chr12 13152525 13152549 -130633906 + (GAAA)n Simple_repeat Simple_repeat 4 27 0 2138 92 0 0 chr12 13153984 13154267 -130632188 - AluSx SINE Alu -1 311 29 184 279 49 0 chr12 13155019 13155080 -130631375 + L2 LINE L2 3209 3272 0 182 264 14 83 chr12 13155168 13155240 -130631215 - MIR SINE MIR -112 150 84 974 143 25 6 chr12 13155748 13155909 -130630546 + AluSg/x SINE Alu 124 287 -25 764 163 0 23 chr12 13155922 13156051 -130630404 + FLAM_C SINE Alu 1 126 -7 1873 131 0 7 chr12 13156373 13156683 -130629772 + AluSx SINE Alu 5 312 0 288 235 151 17 chr12 13156683 13156802 -130629653 + LTR16A1 LTR ERVL 33 167 -290 232 178 0 0 chr12 13159332 13159377 -130627078 - MER117 DNA MER1_type -95 102 58 22 0 0 0 chr12 13159516 13159538 -130626917 + GC_rich Low_complexity Low_complexity 1 22 0 222 269 45 30 chr12 13159918 13159985 -130626470 - MIR3 SINE MIR -53 155 88 358 316 33 13 chr12 13160834 13160997 -130625458 - MIR3 SINE MIR -61 147 10 182 316 96 44 chr12 13160927 13161063 -130625392 + MIR3 SINE MIR 18 160 -48 * 552 145 7 43 chr12 13161736 13161874 -130624581 - L1M4b LINE L1 -5191 1668 1536 * 751 214 55 55 chr12 13161871 13162011 -130624444 - L1M4b LINE L1 -6543 316 174 2089 114 30 0 chr12 13162011 13162308 -130624147 - AluSx SINE Alu -6 306 1 751 214 55 55 chr12 13162308 13162424 -130624031 - L1M4b LINE L1 -6684 175 60 2230 69 40 13 chr12 13162479 13162782 -130623673 - AluY SINE Alu 0 311 1 514 157 0 0 chr12 13163313 13163402 -130623053 + AluSp/q SINE Alu 223 311 -2 2149 92 26 3 chr12 13163587 13163891 -130622564 - AluSx SINE Alu -1 311 1 1236 153 51 9 chr12 13164295 13164510 -130621945 - MER58A DNA MER1_type 0 224 1 1025 86 7 0 chr12 13164863 13165003 -130621452 + AluSg/x SINE Alu 165 305 -5 1870 120 43 7 chr12 13165220 13165519 -130620936 + AluSx SINE Alu 3 312 0 2523 171 37 4 chr12 13165519 13165974 -130620481 + L1PB3 LINE L1 5680 6149 -5 2049 105 0 0 chr12 13165974 13166250 -130620205 - AluSq SINE Alu -13 300 25 337 300 133 24 chr12 13167056 13167299 -130619156 + L1MCa LINE L1 2216 3551 -2875 1591 99 5 0 chr12 13167402 13167613 -130618842 - AluSx SINE Alu -100 212 1 277 194 0 28 chr12 13167625 13167733 -130618722 + (TCTCTG)n Simple_repeat Simple_repeat 2 106 0 222 271 11 66 chr12 13168112 13168293 -130618162 + (CAGAGA)n Simple_repeat Simple_repeat 4 174 0 1470 162 73 7 chr12 13168635 13168907 -130617548 - AluJo SINE Alu -14 298 9 797 168 0 0 chr12 13168919 13169044 -130617411 - FLAM_C SINE Alu -8 125 1 921 267 64 45 chr12 13169702 13169850 -130616605 + L1ME3A LINE L1 5537 5681 -489 2068 91 32 0 chr12 13169850 13170135 -130616320 + AluSg SINE Alu 1 294 -16 921 267 64 45 chr12 13170135 13170360 -130616095 + L1ME3A LINE L1 5681 5917 -253 1743 111 9 97 chr12 13170776 13171118 -130615337 + AluSq SINE Alu 2 313 0 957 194 6 0 chr12 13171358 13171523 -130614932 - AluJb SINE Alu -15 297 132 891 160 0 0 chr12 13172662 13172787 -130613668 + FLAM_C SINE Alu 1 125 -8 253 243 68 0 chr12 13172869 13172943 -130613512 + MIR3 SINE MIR 85 163 -45 187 318 15 15 chr12 13175130 13175196 -130611259 - L2 LINE L2 0 3272 3207 366 23 0 0 chr12 13175394 13175437 -130611018 + (TG)n Simple_repeat Simple_repeat 1 43 0 357 24 0 0 chr12 13176628 13176670 -130609785 + (CA)n Simple_repeat Simple_repeat 1 42 0 298 246 15 0 chr12 13177012 13177077 -130609378 + MIR SINE MIR 80 145 -117 198 259 148 9 chr12 13177089 13177197 -130609258 - L2 LINE L2 -226 3087 2965 861 200 55 10 chr12 13177197 13177397 -130609058 + AluJo SINE Alu 1 209 -103 678 276 46 0 chr12 13178037 13178233 -130608222 - MIR SINE MIR -30 232 28 1993 96 31 0 chr12 13178237 13178528 -130607927 - AluSx SINE Alu -10 302 3 399 307 113 33 chr12 13178726 13178938 -130607517 - MIR SINE MIR -5 257 29 399 274 9 26 chr12 13179068 13179181 -130607274 + L2 LINE L2 3153 3263 -9 270 245 196 39 chr12 13179302 13179404 -130607051 + L2 LINE L2 3193 3310 -3 221 302 0 0 chr12 13179536 13179589 -130606866 - MER5B DNA MER1_type -1 177 125 2117 112 3 3 chr12 13179602 13179906 -130606549 + AluSx SINE Alu 1 304 -8 1026 128 27 0 chr12 13179981 13180130 -130606325 - AluSx SINE Alu -159 153 1 1988 103 0 8 chr12 13181084 13181347 -130605108 + AluSx SINE Alu 8 268 -44 186 299 56 37 chr12 13181368 13181475 -130604980 - L2 LINE L2 -822 2492 2384 393 286 45 13 chr12 13181645 13181799 -130604656 + MIR SINE MIR 8 166 -96 2042 127 3 19 chr12 13181837 13182151 -130604304 + AluSx SINE Alu 1 309 -3 244 213 0 0 chr12 13182314 13182361 -130604094 - MLT1F1 LTR MaLR -8 559 513 360 232 13 110 chr12 13182561 13182604 -130603851 + MER5A DNA MER1_type 2 48 -141 1372 169 104 18 chr12 13182604 13182883 -130603572 - AluJo SINE Alu -9 303 1 360 232 13 110 chr12 13182883 13182994 -130603461 + MER5A DNA MER1_type 48 141 -48 1249 143 73 54 chr12 13183001 13183182 -130603273 - L1MC3 LINE L1 -21 7764 7573 2028 126 10 0 chr12 13183182 13183475 -130602980 - AluSx SINE Alu -16 296 1 1249 143 73 54 chr12 13183475 13183608 -130602847 - L1MC3 LINE L1 -212 7573 7444 1624 160 7 10 chr12 13183609 13183902 -130602553 - AluSx SINE Alu -20 292 1 1496 137 24 98 chr12 13183912 13184247 -130602208 - AluYb8 SINE Alu -8 310 1 286 229 49 0 chr12 13184694 13184816 -130601639 + (TG)n Simple_repeat Simple_repeat 1 128 0 237 106 35 35 chr12 13184835 13184920 -130601535 + (TG)n Simple_repeat Simple_repeat 2 86 0 434 82 36 36 chr12 13184935 13185045 -130601410 + (GTGTG)n Simple_repeat Simple_repeat 1 110 0 378 0 0 0 chr12 13185141 13185183 -130601272 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 256 233 138 0 chr12 13185723 13185843 -130600612 - MIR SINE MIR -57 151 12 279 371 35 7 chr12 13186138 13186281 -130600174 + MIR SINE MIR 56 202 -60 2004 98 0 0 chr12 13188395 13188661 -130597794 - AluSx SINE Alu -46 266 1 497 178 85 0 chr12 13188661 13188779 -130597676 + Charlie5 DNA MER1_type 2475 2602 -10 1180 188 5 0 chr12 13189161 13189374 -130597081 + AluJo SINE Alu 1 214 -98 326 295 9 38 chr12 13189632 13189737 -130596718 + L1 LINE L1 3253 3354 -2792 1979 66 0 0 chr12 13189738 13189981 -130596474 + AluY SINE Alu 1 243 -68 22 0 0 0 chr12 13190011 13190033 -130596422 + GC_rich Low_complexity Low_complexity 1 22 0 182 294 20 0 chr12 13190088 13190139 -130596316 - MIR3 SINE MIR -52 156 105 191 275 50 38 chr12 13190711 13190791 -130595664 + MIR SINE MIR 105 185 -77 342 200 0 0 chr12 13191049 13191109 -130595346 - MER33 DNA MER1_type -226 98 39 941 111 0 0 chr12 13191110 13191236 -130595219 + FLAM_C SINE Alu 1 126 -7 313 149 0 0 chr12 13191281 13191328 -130595127 - MER33 DNA MER1_type -271 53 7 609 266 38 22 chr12 13191543 13191727 -130594728 - MIR SINE MIR -74 188 2 2458 60 0 3 chr12 13192330 13192632 -130593823 - AluY SINE Alu -10 301 1 1893 96 0 0 chr12 13192657 13192908 -130593547 - AluSq SINE Alu -62 251 1 2067 129 10 3 chr12 13193259 13193569 -130592886 - AluSx SINE Alu 0 312 1 1791 122 52 14 chr12 13193880 13194015 -130592440 + AluSx SINE Alu 1 129 -183 2096 88 14 0 chr12 13194015 13194310 -130592145 + AluY SINE Alu 1 299 -12 1791 122 52 14 chr12 13194310 13194461 -130591994 + AluSx SINE Alu 129 298 -14 229 229 0 0 chr12 13194461 13194522 -130591933 - L1M4 LINE L1 -2696 3948 3888 1696 102 4 0 chr12 13194711 13194946 -130591509 - AluSq SINE Alu -77 236 1 22 35 0 0 chr12 13194952 13194981 -130591474 + AT_rich Low_complexity Low_complexity 1 29 0 5203 80 13 11 chr12 13195526 13196286 -130590169 - L1PB1 LINE L1 -1 6150 5389 406 323 194 0 chr12 13196718 13196935 -130589520 + MIR SINE MIR 2 260 -2 2084 108 3 0 chr12 13196935 13197222 -130589233 + AluSx SINE Alu 1 288 -24 751 253 138 26 chr12 13197365 13197669 -130588786 + MER46C DNA MER2_type 1 338 0 1181 217 0 0 chr12 13197908 13198138 -130588317 + L1MB5 LINE L1 5703 5932 -242 2190 115 0 6 chr12 13198264 13198578 -130587877 - AluSx SINE Alu 0 312 1 2085 106 14 0 chr12 13198580 13198873 -130587582 - AluSx SINE Alu -15 297 1 1635 234 27 44 chr12 13198873 13199347 -130587108 - L1M4 LINE L1 -5486 1056 591 2277 164 81 59 chr12 13199372 13199395 -130587060 - L1MC3 LINE L1 -1629 6156 6135 1232 142 178 36 chr12 13199395 13199648 -130586807 - AluJo SINE Alu -23 289 1 2277 164 81 59 chr12 13199648 13200166 -130586289 - L1MC3 LINE L1 -1650 6135 5603 2120 132 0 0 chr12 13200243 13200546 -130585909 - AluSq SINE Alu -10 303 1 968 263 75 76 chr12 13200550 13200971 -130585484 - L1M4 LINE L1 -5948 594 173 2125 115 0 0 chr12 13200971 13201259 -130585196 - AluSx SINE Alu -11 301 14 968 263 75 76 chr12 13201259 13201374 -130585081 - L1M4 LINE L1 -6369 173 59 192 77 0 0 chr12 13201413 13201439 -130585016 + (TTCC)n Simple_repeat Simple_repeat 2 27 0 2179 119 3 3 chr12 13201439 13201751 -130584704 - AluSq SINE Alu -1 312 1 1140 115 10 35 chr12 13201954 13202154 -130584301 + AluSg/x SINE Alu 110 304 -6 555 254 33 44 chr12 13202271 13202452 -130584003 - MIR SINE MIR -42 220 42 1541 125 0 0 chr12 13202631 13202847 -130583608 - AluSg/x SINE Alu -24 286 71 740 243 40 144 chr12 13203191 13203511 -130582944 + L2 LINE L2 2691 2896 -417 1897 109 11 7 chr12 13203511 13203819 -130582636 + AluSx SINE Alu 1 309 0 740 243 40 144 chr12 13203819 13204197 -130582258 + L2 LINE L2 2896 3312 -1 289 256 165 33 chr12 13204287 13204408 -130582047 + L2 LINE L2 3136 3272 0 369 212 237 8 chr12 13204526 13204644 -130581811 + MER5A DNA MER1_type 42 186 -3 303 179 0 30 chr12 13204653 13204720 -130581735 + L2 LINE L2 2904 2968 -304 467 246 96 21 chr12 13205989 13206176 -130580279 - L2 LINE L2 -574 2740 2540 2227 97 0 7 chr12 13206226 13206536 -130579919 - AluSc SINE Alu -1 308 1 30 0 0 0 chr12 13206536 13206566 -130579889 + AT_rich Low_complexity Low_complexity 1 30 0 755 155 0 0 chr12 13206566 13206682 -130579773 - FLAM_C SINE Alu -25 118 3 287 224 26 0 chr12 13206718 13206794 -130579661 + MIR SINE MIR 115 192 -70 1238 134 9 63 chr12 13207398 13207469 -130578986 + AluSg/x SINE Alu 72 145 -165 2046 114 3 0 chr12 13207469 13207767 -130578688 + AluSp SINE Alu 1 299 -14 1238 134 9 63 chr12 13207767 13207918 -130578537 + AluSg/x SINE Alu 145 282 -28 268 291 26 7 chr12 13208994 13209090 -130577365 + GA-rich Low_complexity Low_complexity 1 103 -51 874 156 0 42 chr12 13209090 13209257 -130577198 + FRAM SINE Alu 1 160 -6 268 291 26 7 chr12 13209257 13209311 -130577144 + GA-rich Low_complexity Low_complexity 103 154 0 225 393 0 17 chr12 13209707 13209824 -130576631 - MIR SINE MIR -60 148 34 837 292 80 46 chr12 13210014 13210534 -130575921 - L2 LINE L2 -3 3269 2726 2336 67 10 6 chr12 13210611 13210923 -130575532 + AluSp SINE Alu 1 313 0 1540 145 24 85 chr12 13211921 13212153 -130574302 + AluJo SINE Alu 1 245 -67 2223 93 3 3 chr12 13212153 13212455 -130574000 - AluSx SINE Alu -10 302 1 1540 145 24 85 chr12 13212455 13212510 -130573945 + AluJo SINE Alu 245 268 -44 1675 93 0 4 chr12 13212510 13212736 -130573719 - AluSg SINE Alu -84 226 2 1540 145 24 85 chr12 13212736 13212778 -130573677 + AluJo SINE Alu 268 311 -1 2585 285 70 5 chr12 13212951 13213828 -130572627 + L1ME1 LINE L1 36 969 -5427 2209 86 7 7 chr12 13213835 13214137 -130572318 + AluSx SINE Alu 1 302 -10 569 160 0 47 chr12 13214244 13214350 -130572105 + FRAM SINE Alu 60 160 -16 522 256 52 62 chr12 13214354 13214459 -130571996 + L1ME1 LINE L1 4524 4628 -1587 2292 91 0 0 chr12 13214459 13214757 -130571698 + AluSq SINE Alu 1 298 -15 522 256 52 62 chr12 13214757 13214818 -130571637 + L1ME1 LINE L1 4628 4690 -1525 221 0 35 0 chr12 13214818 13214847 -130571608 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 522 256 52 62 chr12 13214847 13214890 -130571565 + L1ME1 LINE L1 4690 4732 -1483 2924 218 41 33 chr12 13214947 13215088 -130571367 + L1ME1 LINE L1 4967 5105 -1130 2430 58 0 10 chr12 13215088 13215398 -130571057 + AluY SINE Alu 1 307 -4 2924 218 41 33 chr12 13215398 13215656 -130570799 + L1ME1 LINE L1 5105 5360 -875 2314 98 0 0 chr12 13215656 13215962 -130570493 + AluSx SINE Alu 1 306 -6 2924 218 41 33 chr12 13215962 13216753 -130569702 + L1ME1 LINE L1 5360 6177 -58 449 217 14 51 chr12 13216659 13216797 -130569658 + L1MA10 LINE L1 6244 6376 -27 * 1787 159 0 0 chr12 13216875 13217152 -130569303 - AluJo SINE Alu -35 277 1 2289 74 3 7 chr12 13217158 13217457 -130568998 - AluSp SINE Alu -15 298 1 2053 103 3 39 chr12 13217458 13217491 -130568964 - AluSx SINE Alu -11 301 268 2419 65 3 3 chr12 13217491 13217798 -130568657 + AluSp SINE Alu 1 307 -6 2053 103 3 39 chr12 13217798 13218076 -130568379 - AluSx SINE Alu -44 268 1 268 286 86 9 chr12 13218607 13218712 -130567743 - MIR SINE MIR -61 201 89 608 220 68 0 chr12 13219493 13219611 -130566844 - FLAM_A SINE Alu -16 126 1 2036 102 3 53 chr12 13219621 13219943 -130566512 - AluSx SINE Alu -6 306 1 249 191 0 0 chr12 13219958 13220000 -130566455 + L2 LINE L2 3186 3227 -86 742 150 0 65 chr12 13220032 13220098 -130566357 - MER45A DNA AcHobo -1413 168 99 2198 69 0 17 chr12 13220098 13220410 -130566045 - AluSx SINE Alu 0 307 1 742 150 0 65 chr12 13220410 13220495 -130565960 - MER45A DNA AcHobo -1482 99 26 192 188 0 0 chr12 13220530 13220562 -130565893 - L2 LINE L2 -20 3252 3221 432 68 27 14 chr12 13222458 13222532 -130563923 + (GGA)n Simple_repeat Simple_repeat 2 76 0 738 128 0 27 chr12 13222547 13222695 -130563760 + (GGAA)n Simple_repeat Simple_repeat 4 147 0 188 351 135 42 chr12 13222771 13223104 -130563351 - L2 LINE L2 -1984 1330 967 186 43 0 0 chr12 13223174 13223197 -130563258 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 920 176 0 0 chr12 13223201 13223349 -130563106 - AluJo/FRAM SINE Alu -30 282 135 2063 153 0 0 chr12 13223350 13223664 -130562791 - 7SLRNA srpRNA srpRNA -6 314 1 1502 156 54 14 chr12 13223747 13224023 -130562432 - AluJb SINE Alu -21 291 5 461 244 61 0 chr12 13224052 13224167 -130562288 - L1ME3A LINE L1 -317 5853 5732 556 188 27 0 chr12 13224186 13224298 -130562157 - L1MD3 LINE L1 -8 7987 7873 1731 176 29 26 chr12 13224303 13224403 -130562052 + MER7A DNA MER2_type 1 99 -2939 2259 103 3 0 chr12 13224403 13224714 -130561741 - AluSx SINE Alu 0 312 1 1731 176 29 26 chr12 13224714 13224954 -130561501 + MER7A DNA MER2_type 99 340 -6 1916 134 0 13 chr12 13224985 13225291 -130561164 + AluSx SINE Alu 1 302 -10 1905 112 42 11 chr12 13225308 13225593 -130560862 + AluSx SINE Alu 1 294 -18 2332 51 14 0 chr12 13225593 13225885 -130560570 + AluY SINE Alu 1 296 -15 275 161 36 0 chr12 13225936 13225992 -130560463 - AluJb SINE Alu -1 301 244 1067 189 0 11 chr12 13225992 13226183 -130560272 - AluJb SINE Alu -101 211 23 1869 130 3 36 chr12 13226227 13226535 -130559920 - AluSx SINE Alu -14 298 1 207 0 0 0 chr12 13226535 13226558 -130559897 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 209 195 0 0 chr12 13226597 13226638 -130559817 + T-rich Low_complexity Low_complexity 2 42 0 423 294 182 18 chr12 13226714 13226989 -130559466 - L1ME3A LINE L1 -588 5576 5257 2002 112 0 4 chr12 13226989 13227267 -130559188 - AluSx SINE Alu -18 294 18 300 183 0 0 chr12 13227493 13227526 -130558929 + A-rich Low_complexity Low_complexity 1 33 -38 2123 113 3 3 chr12 13227526 13227835 -130558620 + AluSg SINE Alu 1 309 -1 300 183 0 0 chr12 13227835 13227872 -130558583 + A-rich Low_complexity Low_complexity 32 71 0 628 249 140 56 chr12 13227971 13228031 -130558424 + L2 LINE L2 2839 2893 -420 2034 130 0 3 chr12 13228031 13228330 -130558125 - AluSx SINE Alu -14 298 1 628 249 140 56 chr12 13228330 13228572 -130557883 + L2 LINE L2 2893 3172 -141 1720 182 0 3 chr12 13228572 13228880 -130557575 + AluJb SINE Alu 1 307 -5 628 249 140 56 chr12 13228880 13228897 -130557558 + L2 LINE L2 3172 3186 -127 591 161 99 184 chr12 13228906 13229145 -130557310 + MER33 DNA MER1_type 2 260 -2325 720 164 55 16 chr12 13229145 13229273 -130557182 - FLAM_C SINE Alu 0 133 1 943 195 18 0 chr12 13229280 13229449 -130557006 - FAM SINE Alu -1 174 3 591 161 99 184 chr12 13229449 13229554 -130556901 + MER33 DNA MER1_type 266 324 0 235 282 204 10 chr12 13229556 13229659 -130556796 + L2 LINE L2 3191 3313 0 411 227 116 63 chr12 13229733 13229839 -130556616 - L1MB8 LINE L1 -16 6162 6063 1794 130 0 25 chr12 13229839 13230124 -130556331 - AluJo SINE Alu -34 278 1 411 227 116 63 chr12 13230124 13230224 -130556231 - L1MB8 LINE L1 -115 6063 5945 2286 79 0 28 chr12 13230291 13230608 -130555847 + AluSx SINE Alu 1 308 -4 1442 174 49 14 chr12 13230714 13231002 -130555453 + AluJb SINE Alu 1 298 -14 32 103 0 0 chr12 13231489 13231605 -130554850 + GC_rich Low_complexity Low_complexity 1 116 0 517 236 89 31 chr12 13233047 13233265 -130553190 - Charlie8 DNA MER1_type -992 1425 68 2007 95 50 3 chr12 13233287 13233570 -130552885 + AluSx SINE Alu 1 296 -16 1320 87 0 0 chr12 13233718 13233891 -130552564 - AluSg/x SINE Alu -9 301 129 659 215 21 16 chr12 13233891 13234077 -130552378 - Charlie1 DNA MER1_type -11 2750 2564 2151 115 3 0 chr12 13234085 13234390 -130552065 - AluSx SINE Alu -6 306 1 2260 85 0 0 chr12 13234399 13234693 -130551762 - AluY SINE Alu -17 294 1 1749 159 3 50 chr12 13234782 13235105 -130551350 - AluJb SINE Alu -6 306 1 652 290 125 9 chr12 13235185 13235409 -130551046 + MIR SINE MIR 3 252 -10 189 0 0 0 chr12 13235414 13235435 -130551020 + (TTA)n Simple_repeat Simple_repeat 1 21 0 552 252 162 17 chr12 13235448 13235682 -130550773 - MER102b DNA MER1_type -23 318 51 2199 129 3 0 chr12 13235716 13236011 -130550444 + AluSg SINE Alu 1 296 -14 1984 145 3 0 chr12 13236042 13236348 -130550107 + AluSx SINE Alu 1 307 0 275 189 0 0 chr12 13236866 13236919 -130549536 - Charlie8 DNA MER1_type -1003 1414 1362 428 217 0 108 chr12 13236944 13237073 -130549382 - Charlie8 DNA MER1_type -2205 212 98 549 255 122 16 chr12 13237073 13237126 -130549329 - MER3 DNA MER1_type -1 208 162 2181 102 0 7 chr12 13237126 13237435 -130549020 + AluSx SINE Alu 1 307 0 549 255 122 16 chr12 13237435 13237568 -130548887 - MER3 DNA MER1_type -47 162 1 2580 74 0 0 chr12 13237605 13237916 -130548539 - AluY SINE Alu 0 311 1 1975 145 3 3 chr12 13237916 13238212 -130548243 - AluSx SINE Alu -5 307 12 430 161 0 23 chr12 13238422 13238509 -130547946 - FRAM SINE Alu -77 99 15 332 158 0 0 chr12 13238514 13238571 -130547884 + Alu SINE Alu 244 300 -2 1562 147 0 0 chr12 13238862 13239080 -130547375 - AluJb SINE Alu -11 301 84 1965 164 3 0 chr12 13239084 13239251 -130547204 - AluJb SINE Alu -12 300 130 201 39 0 0 chr12 13239251 13239277 -130547178 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1965 164 3 0 chr12 13239277 13239408 -130547047 - AluJb SINE Alu -182 130 1 254 273 57 0 chr12 13239557 13239645 -130546810 + MIR SINE MIR 27 119 -89 544 223 19 64 chr12 13239648 13239805 -130546650 + MER91B DNA MER1_type 1 150 -40 2213 120 0 0 chr12 13239980 13240272 -130546183 - AluSx SINE Alu -16 296 5 1060 211 7 76 chr12 13240426 13240537 -130545918 + AluJo SINE Alu 27 144 -168 414 0 0 0 chr12 13240537 13240583 -130545872 + (CA)n Simple_repeat Simple_repeat 2 47 0 297 0 0 0 chr12 13240582 13240615 -130545840 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 1060 211 7 76 chr12 13240583 13240807 -130545648 + AluJo SINE Alu 144 309 -3 1394 255 26 68 chr12 13240828 13241369 -130545086 - L1MC4 LINE L1 -167 7875 7358 1729 151 0 0 chr12 13241529 13241780 -130544675 + AluJb SINE Alu 50 300 -12 2121 102 20 14 chr12 13241783 13242076 -130544379 + AluSq SINE Alu 3 297 -16 338 77 26 51 chr12 13242077 13242155 -130544300 + (GGAGA)n Simple_repeat Simple_repeat 4 79 0 525 274 18 55 chr12 13242320 13242539 -130543916 + L2 LINE L2 3086 3296 -17 327 330 8 17 chr12 13242694 13242812 -130543643 + L2 LINE L2 3197 3313 0 331 263 234 6 chr12 13242915 13243090 -130543365 + L2 LINE L2 3086 3300 -13 922 196 34 0 chr12 13243361 13243540 -130542915 + AluSg/x SINE Alu 107 291 -21 1519 176 73 55 chr12 13243572 13243861 -130542594 + L1MB8 LINE L1 4734 5035 -1111 2090 69 62 11 chr12 13243861 13244137 -130542318 - AluSg1 SINE Alu -17 292 3 1519 176 73 55 chr12 13244137 13244285 -130542170 + L1MB8 LINE L1 5035 5179 -967 1307 189 8 0 chr12 13244286 13244535 -130541920 + L1MB8 LINE L1 5444 5694 -490 408 182 13 0 chr12 13244536 13244613 -130541842 + AluJo SINE Alu 2 79 -233 * 497 174 0 0 chr12 13244611 13244697 -130541758 - AluSg/x SINE Alu -14 296 211 3518 106 4 4 chr12 13244697 13245206 -130541249 - MER9 LTR ERVK 0 511 3 1607 119 41 0 chr12 13245206 13245424 -130541031 - AluSq SINE Alu -86 227 1 1266 148 9 36 chr12 13245431 13245654 -130540801 + AluJo SINE Alu 75 291 -21 2169 175 36 30 chr12 13245657 13246155 -130540300 + L1MB8 LINE L1 5678 6178 0 2326 124 0 0 chr12 13246168 13246475 -130539980 + AluSx SINE Alu 1 307 -5 1927 155 10 0 chr12 13246482 13246778 -130539677 + AluJo SINE Alu 1 299 -13 992 221 39 48 chr12 13247812 13248147 -130538308 + L2 LINE L2 2941 3272 0 2222 119 0 10 chr12 13248179 13248489 -130537966 - AluSx SINE Alu -5 307 1 2218 135 0 0 chr12 13249330 13249627 -130536828 - AluSx SINE Alu -15 297 1 3424 213 82 18 chr12 13249889 13250023 -130536432 + L1MB7 LINE L1 5016 5140 -1044 2113 136 10 0 chr12 13250023 13250331 -130536124 + AluJo SINE Alu 1 311 -1 3424 213 82 18 chr12 13250331 13251259 -130535196 + L1MB7 LINE L1 5140 6139 -45 2008 142 14 7 chr12 13251261 13251550 -130534905 + AluSx SINE Alu 1 291 -21 2276 109 3 10 chr12 13251553 13251864 -130534591 + AluSg1 SINE Alu 1 309 0 960 126 0 28 chr12 13251880 13252023 -130534432 + FLAM_C SINE Alu 1 139 -4 643 135 0 19 chr12 13252101 13252205 -130534250 - AluJb SINE Alu -126 186 85 1883 157 0 26 chr12 13252531 13252836 -130533619 - AluJb SINE Alu -15 297 1 203 96 0 135 chr12 13255086 13255113 -130531342 + (A)n Simple_repeat Simple_repeat 1 19 -26 2163 125 3 16 chr12 13255113 13255426 -130531029 + AluSx SINE Alu 1 309 -3 203 96 0 135 chr12 13255426 13255450 -130531005 + (A)n Simple_repeat Simple_repeat 19 45 0 310 187 116 123 chr12 13255543 13255615 -130530840 - MER103 DNA DNA -12 154 83 2258 96 7 3 chr12 13255615 13255907 -130530548 - AluSx SINE Alu -18 294 2 310 187 116 123 chr12 13255907 13255989 -130530466 - MER103 DNA DNA -83 83 1 271 265 122 10 chr12 13256410 13256508 -130529947 + MIR3 SINE MIR 10 118 -90 1440 136 139 12 chr12 13256687 13256945 -130529510 + AluSg1 SINE Alu 9 299 -10 243 133 0 0 chr12 13257000 13257045 -130529410 + (A)n Simple_repeat Simple_repeat 1 45 0 2600 81 0 0 chr12 13257050 13257359 -130529096 + AluSg SINE Alu 1 309 -1 2223 80 49 11 chr12 13257681 13257967 -130528488 + AluSx SINE Alu 1 297 -15 189 258 45 15 chr12 13258564 13258630 -130527825 + L3 LINE CR1 1085 1152 -425 304 304 36 41 chr12 13258657 13258851 -130527604 + L1MB4 LINE L1 5552 5744 -377 2209 140 7 0 chr12 13258857 13259164 -130527291 + AluSx SINE Alu 1 309 -3 418 177 10 10 chr12 13259167 13259263 -130527192 + GA-rich Low_complexity Low_complexity 4 99 0 307 238 19 57 chr12 13259263 13259368 -130527087 + HAL1 LINE L1 1114 1214 -1293 373 306 169 0 chr12 13259460 13259584 -130526871 + L3 LINE CR1 1166 1310 -267 839 141 7 42 chr12 13259584 13259726 -130526729 - AluJo SINE Alu -62 250 114 255 241 46 58 chr12 13259789 13259876 -130526579 + L2 LINE L2 3187 3272 0 2244 107 37 0 chr12 13259929 13260227 -130526228 - AluSx SINE Alu -3 309 1 892 222 0 6 chr12 13260247 13260423 -130526032 - FAM SINE Alu 0 175 1 1737 145 39 21 chr12 13260426 13260709 -130525746 - AluJo SINE Alu -12 300 13 2076 137 0 10 chr12 13260749 13261048 -130525407 - AluSx SINE Alu -16 296 1 189 270 0 68 chr12 13261188 13261262 -130525193 + MIR3 SINE MIR 4 72 -136 2041 55 0 0 chr12 13261422 13261659 -130524796 + AluY SINE Alu 74 310 -1 2361 99 3 0 chr12 13261716 13262020 -130524435 + AluSg SINE Alu 1 305 -5 1117 126 0 25 chr12 13262112 13262293 -130524162 - AluSg/x SINE Alu 0 310 132 1524 102 19 0 chr12 13262293 13262499 -130523956 - AluSc SINE Alu -8 301 92 251 86 0 0 chr12 13262600 13262635 -130523820 - Tigger4(Zombi) DNA MER2_type -221 2510 2476 * 375 147 93 13 chr12 13262628 13262703 -130523752 - Tigger4(Zombi) DNA MER2_type -2650 81 1 2052 184 37 31 chr12 13262703 13263042 -130523413 + L1MB4 LINE L1 5720 6064 -116 1996 133 0 17 chr12 13263042 13263342 -130523113 + AluJo SINE Alu 4 298 -14 2052 184 37 31 chr12 13263342 13263458 -130522997 + L1MB4 LINE L1 6064 6178 -2 226 308 31 0 chr12 13263465 13263530 -130522925 - MIR SINE MIR 0 262 196 2586 66 0 0 chr12 13263530 13263835 -130522620 + AluY SINE Alu 1 305 -6 306 216 5 197 chr12 13263843 13264061 -130522394 - L2 LINE L2 -830 2484 2309 425 237 86 14 chr12 13264667 13264806 -130521649 - MER46C DNA MER2_type -107 231 83 601 185 25 0 chr12 13265090 13265209 -130521246 + FLAM_C SINE Alu 2 123 -20 2224 122 10 0 chr12 13265216 13265520 -130520935 + AluSx SINE Alu 5 311 -1 204 149 0 43 chr12 13265905 13265952 -130520503 - MIR SINE MIR -70 192 148 345 302 34 20 chr12 13266313 13266462 -130519993 + L1MB2 LINE L1 5548 5698 -423 377 139 14 0 chr12 13266462 13266534 -130519921 + L2 LINE L2 2713 2785 -529 1857 137 0 0 chr12 13266645 13266901 -130519554 + AluSx SINE Alu 1 256 -56 1603 181 20 30 chr12 13266929 13267066 -130519389 + AluJo SINE Alu 1 138 -174 2375 108 0 0 chr12 13267066 13267372 -130519083 + AluSx SINE Alu 1 306 -6 1603 181 20 30 chr12 13267372 13267538 -130518917 + AluJo SINE Alu 138 301 -11 610 191 61 0 chr12 13267549 13267680 -130518775 + MER33 DNA MER1_type 2 140 -184 2900 175 52 18 chr12 13267686 13268120 -130518335 + L1MB4 LINE L1 5492 5956 -224 2463 63 0 38 chr12 13268120 13268435 -130518020 + AluY SINE Alu 1 303 -8 2900 175 52 18 chr12 13268435 13268629 -130517826 + L1MB4 LINE L1 5956 6142 -38 2239 117 0 10 chr12 13268631 13268938 -130517517 + AluSx SINE Alu 1 304 -8 2221 155 38 31 chr12 13268939 13269290 -130517165 + L1MB2 LINE L1 5679 6035 -136 2460 76 0 7 chr12 13269290 13269591 -130516864 + AluY SINE Alu 2 300 -11 2221 155 38 31 chr12 13269591 13269684 -130516771 + L1MB2 LINE L1 6035 6126 -45 2042 132 0 11 chr12 13269684 13269965 -130516490 + AluJb SINE Alu 1 278 -34 188 180 131 16 chr12 13270215 13270276 -130516179 + MER5A DNA MER1_type 9 76 -113 2217 110 0 0 chr12 13270524 13270838 -130515617 + AluSg SINE Alu 1 314 0 300 236 171 62 chr12 13270880 13271138 -130515317 + MER46C DNA MER2_type 13 298 -40 2394 105 0 0 chr12 13271570 13271874 -130514581 + AluSx SINE Alu 1 304 -8 1667 171 0 59 chr12 13271884 13272206 -130514249 + AluJb SINE Alu 1 303 -9 545 272 46 20 chr12 13272249 13272444 -130514011 + MIR SINE MIR 63 262 0 236 328 0 0 chr12 13273128 13273195 -130513260 - L2 LINE L2 -246 3067 3001 451 176 22 0 chr12 13273202 13273293 -130513162 + FRAM SINE Alu 72 164 -12 2430 101 3 0 chr12 13273293 13273599 -130512856 + AluSx SINE Alu 1 307 -5 1914 164 3 7 chr12 13273599 13273897 -130512558 + AluJb SINE Alu 1 298 -14 460 271 15 15 chr12 13273934 13274067 -130512388 + Tigger1 DNA MER2_type 31 163 -2255 * 1130 189 5 9 chr12 13274049 13274266 -130512189 + Tigger1 DNA MER2_type 2203 2418 0 2239 104 3 16 chr12 13274442 13274758 -130511697 + AluSp SINE Alu 2 313 0 241 231 88 0 chr12 13274762 13274853 -130511602 + L2 LINE L2 2417 2515 -799 282 185 46 0 chr12 13275096 13275161 -130511294 + MIR SINE MIR 58 125 -83 25 51 0 0 chr12 13275454 13275493 -130510962 + AT_rich Low_complexity Low_complexity 1 39 0 2269 103 3 0 chr12 13275543 13275834 -130510621 - AluSg SINE Alu -18 292 1 2703 56 0 0 chr12 13275844 13276149 -130510306 - AluY SINE Alu -6 305 1 2022 126 14 17 chr12 13276200 13276329 -130510126 + AluSx SINE Alu 5 133 -179 2301 115 3 0 chr12 13276329 13276634 -130509821 + AluSg SINE Alu 1 306 -4 2022 126 14 17 chr12 13276634 13276798 -130509657 + AluSx SINE Alu 133 297 -15 2248 96 16 19 chr12 13276824 13277136 -130509319 + AluSq SINE Alu 1 311 -2 325 163 62 38 chr12 13277321 13277401 -130509054 + HsTC2 DNA Tc2 6 87 -1811 236 324 6 62 chr12 13277746 13277897 -130508558 - MER5A DNA MER1_type -21 168 27 2112 131 6 13 chr12 13277897 13278209 -130508246 - AluJb SINE Alu -2 310 1 236 324 6 62 chr12 13278209 13278233 -130508222 - MER5A DNA MER1_type -162 27 3 228 300 43 0 chr12 13278301 13278371 -130508084 - L2 LINE L2 0 3272 3200 697 296 12 16 chr12 13278451 13278701 -130507754 + L1ME2 LINE L1 5816 6064 -100 1301 163 26 26 chr12 13278746 13278979 -130507476 - AluJb SINE Alu -79 233 1 1997 97 0 40 chr12 13279034 13279332 -130507123 + AluSx SINE Alu 1 286 -26 183 80 0 0 chr12 13279429 13279454 -130507001 + (TA)n Simple_repeat Simple_repeat 2 26 0 312 302 67 44 chr12 13280150 13280375 -130506080 - MIR SINE MIR 0 262 33 196 237 51 17 chr12 13280631 13280690 -130505765 + MIR SINE MIR 109 169 -93 411 279 18 96 chr12 13280757 13280976 -130505479 + L1MC5 LINE L1 7730 7931 -30 2113 129 3 0 chr12 13280977 13281272 -130505183 + AluSx SINE Alu 1 296 -16 205 191 0 0 chr12 13281322 13281364 -130505091 + A-rich Low_complexity Low_complexity 1 42 0 759 174 8 0 chr12 13281365 13281497 -130504958 + FLAM_C SINE Alu 1 133 0 1923 162 7 3 chr12 13281512 13281820 -130504635 + AluSx SINE Alu 1 309 -3 226 262 113 50 chr12 13281823 13281964 -130504491 - MIR SINE MIR 0 262 113 2326 66 3 14 chr12 13281986 13282274 -130504181 - AluSx SINE Alu -17 295 11 274 228 252 32 chr12 13282398 13282521 -130503934 - MIR SINE MIR 0 262 113 434 265 59 15 chr12 13282753 13282889 -130503566 - MIR SINE MIR -65 197 56 459 286 53 12 chr12 13283009 13283180 -130503275 - MIR SINE MIR -78 184 7 1904 149 7 3 chr12 13283357 13283653 -130502802 + AluJo SINE Alu 1 297 -15 367 251 217 50 chr12 13283682 13283981 -130502474 + L1MC4a LINE L1 5580 5928 -1880 2094 104 0 28 chr12 13283991 13284304 -130502151 - AluSx SINE Alu 0 305 1 210 187 22 0 chr12 13285897 13285957 -130500498 + MIR SINE MIR 109 168 -94 1816 168 7 3 chr12 13286197 13286506 -130499949 - AluJo SINE Alu -2 310 1 1748 112 0 0 chr12 13286524 13286765 -130499690 + AluSx SINE Alu 57 297 -15 285 216 70 0 chr12 13286882 13286964 -130499491 - MIR SINE MIR -58 150 75 336 221 0 0 chr12 13287529 13287597 -130498858 + MIR SINE MIR 80 147 -115 184 86 32 75 chr12 13288971 13289064 -130497391 + (TTGTG)n Simple_repeat Simple_repeat 3 91 0 184 208 14 14 chr12 13289191 13289263 -130497192 + CT-rich Low_complexity Low_complexity 2 73 0 192 240 33 83 chr12 13289264 13289385 -130497070 + L2 LINE L2 1606 1720 -1594 912 243 36 67 chr12 13289387 13289836 -130496619 + L1MC5 LINE L1 7494 7928 -33 1863 127 22 0 chr12 13289855 13290176 -130496279 + AluSx SINE Alu 1 327 0 522 241 321 29 chr12 13290273 13290579 -130495876 + L2 LINE L2 2891 3293 -20 743 143 109 0 chr12 13290579 13290698 -130495757 - FLAM_C SINE Alu 0 133 2 1685 149 0 4 chr12 13290711 13290972 -130495483 - AluJb SINE Alu -15 297 38 2015 129 0 26 chr12 13291123 13291426 -130495029 + AluSx SINE Alu 1 295 -17 1982 122 0 48 chr12 13291429 13291740 -130494715 + AluSx SINE Alu 1 296 -16 2418 60 0 19 chr12 13291741 13292058 -130494397 + AluY SINE Alu 1 311 0 3348 172 19 39 chr12 13292176 13292241 -130494214 + LTR26 LTR ERV1 1 66 -537 2291 107 3 0 chr12 13292241 13292551 -130493904 + AluSx SINE Alu 1 311 -1 3348 172 19 39 chr12 13292551 13293100 -130493355 + LTR26 LTR ERV1 66 603 0 281 248 129 0 chr12 13293321 13293422 -130493033 + LTR16A1 LTR ERVL 81 194 -263 1195 152 0 86 chr12 13293422 13293622 -130492833 + AluJo SINE Alu 83 260 -52 1934 131 0 44 chr12 13293622 13293942 -130492513 - AluJb SINE Alu -6 306 1 1195 152 0 86 chr12 13293942 13293985 -130492470 + AluJo SINE Alu 260 305 -7 1053 251 86 29 chr12 13294107 13294458 -130491997 - MLT1H LTR MaLR -2 547 177 2206 122 0 0 chr12 13294464 13294776 -130491679 - AluSx SINE Alu 0 312 1 257 197 15 0 chr12 13294834 13294900 -130491555 + L2 LINE L2 2545 2611 -703 512 226 5 0 chr12 13294935 13295059 -130491396 + MIR SINE MIR 22 147 -62 1085 152 0 0 chr12 13295060 13295224 -130491231 + FRAM SINE Alu 1 160 -16 261 264 0 0 chr12 13295229 13295282 -130491173 + AluJ/monomer SINE Alu 3 55 -246 1888 141 3 10 chr12 13295282 13295587 -130490868 + AluSx SINE Alu 1 303 -9 1757 161 26 7 chr12 13295590 13295895 -130490560 + AluSx SINE Alu 2 312 0 1692 164 30 10 chr12 13296035 13296340 -130490115 + AluSx SINE Alu 1 311 -1 219 288 25 51 chr12 13296343 13296461 -130489994 + MIR SINE MIR 136 250 -12 355 318 117 7 chr12 13296530 13296684 -130489771 - MIR SINE MIR -81 181 11 246 372 20 14 chr12 13296669 13296817 -130489638 + L2 LINE L2 2599 2747 -567 * 928 223 141 41 chr12 13296824 13297192 -130489263 + L1MC4 LINE L1 7637 8041 -1 2253 163 8 122 chr12 13297212 13297280 -130489175 + L1MB7 LINE L1 5629 5703 -481 1991 116 3 23 chr12 13297280 13297590 -130488865 + AluSx SINE Alu 5 308 -4 2253 163 8 122 chr12 13297590 13297780 -130488675 + L1MB7 LINE L1 5703 5913 -271 2316 79 13 0 chr12 13297780 13298085 -130488370 - AluSp SINE Alu -4 309 1 2253 163 8 122 chr12 13298085 13298394 -130488061 + L1MB7 LINE L1 5913 6255 71 788 187 0 15 chr12 13298394 13298528 -130487927 + FLAM_A SINE Alu 1 132 -1 1732 109 113 0 chr12 13298530 13298805 -130487650 + AluSp SINE Alu 1 306 -7 2253 163 8 122 chr12 13298805 13298832 -130487623 + L1MB7 LINE L1 6132 6160 -24 1989 136 3 3 chr12 13298836 13299138 -130487317 - AluSx SINE Alu -10 302 1 1873 160 0 7 chr12 13299378 13299678 -130486777 + AluJb SINE Alu 1 298 -14 2090 103 34 0 chr12 13299686 13299978 -130486477 + AluSx SINE Alu 1 302 -10 853 151 126 65 chr12 13299982 13300022 -130486433 + MER21B LTR ERV1 602 638 -225 1944 118 6 32 chr12 13300022 13300336 -130486119 + AluSx SINE Alu 1 306 -6 1983 112 0 36 chr12 13300336 13300638 -130485817 + AluSx SINE Alu 5 297 -15 853 151 126 65 chr12 13300638 13300795 -130485660 + MER21B LTR ERV1 637 812 -51 297 287 59 15 chr12 13300881 13301017 -130485438 + L2 LINE L2 3030 3171 -101 21 36 0 0 chr12 13301192 13301220 -130485235 + AT_rich Low_complexity Low_complexity 1 28 0 1442 152 21 110 chr12 13301220 13301388 -130485067 - AluYb8 SINE Alu -19 299 172 2333 83 0 10 chr12 13301388 13301701 -130484754 - AluY SINE Alu -1 310 1 1442 152 21 110 chr12 13301701 13301860 -130484595 - AluYb8 SINE Alu -146 172 1 2047 134 3 6 chr12 13301875 13302189 -130484266 - AluSp SINE Alu 0 313 1 2030 101 0 0 chr12 13302203 13302479 -130483976 - AluSg SINE Alu -30 280 5 2056 118 0 3 chr12 13302553 13302850 -130483605 - AluSq SINE Alu -17 296 1 575 179 24 0 chr12 13302850 13302973 -130483482 - L1M3 LINE L1 -689 5491 5366 635 220 23 0 chr12 13303148 13303280 -130483175 + MIR SINE MIR 82 216 -46 2228 78 0 7 chr12 13303295 13303588 -130482867 + AluSg1 SINE Alu 1 291 -18 1257 164 0 0 chr12 13303591 13303792 -130482663 + AluJb SINE Alu 39 239 -73 1043 100 0 0 chr12 13303792 13303932 -130482523 + AluSg/x SINE Alu 156 295 -15 2066 123 7 0 chr12 13303934 13304236 -130482219 + AluSc SINE Alu 1 304 -5 2462 69 0 0 chr12 13304337 13304643 -130481812 + AluY SINE Alu 1 306 -5 2306 97 0 0 chr12 13304655 13304964 -130481491 + AluSc SINE Alu 1 309 0 388 288 86 40 chr12 13305039 13305077 -130481378 + MIR SINE MIR 1 36 -226 1257 170 85 15 chr12 13305077 13305348 -130481107 + AluJb SINE Alu 4 293 -19 388 288 86 40 chr12 13305348 13305507 -130480948 + MIR SINE MIR 36 207 -55 396 156 16 0 chr12 13305618 13305682 -130480773 - AluS SINE Alu -238 65 1 2126 84 27 3 chr12 13306427 13306725 -130479730 - AluSx SINE Alu -7 305 1 309 318 71 0 chr12 13306850 13306976 -130479479 - L1MC4a LINE L1 -1952 5856 5722 2378 71 0 3 chr12 13307892 13308222 -130478233 - AluSp SINE Alu 0 313 1 228 305 144 17 chr12 13308279 13308397 -130478058 - MIR SINE MIR -58 150 18 187 163 125 113 chr12 13308356 13308436 -130478019 + MIR SINE MIR 41 121 -87 * 2052 125 59 14 chr12 13308876 13309898 -130476557 + AluSq SINE Alu 1 299 -14 202 161 179 18 chr12 13309917 13309973 -130476482 - MIR SINE MIR -87 121 57 2054 124 3 0 chr12 13310008 13310307 -130476148 - AluSp SINE Alu -13 300 1 1947 128 3 3 chr12 13310311 13310608 -130475847 - AluSx SINE Alu -15 297 1 314 265 0 24 chr12 13310727 13310810 -130475645 - L2 LINE L2 -4 3309 3229 234 299 17 51 chr12 13311199 13311316 -130475139 + MIR SINE MIR 71 183 -79 189 74 0 0 chr12 13311487 13311514 -130474941 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2196 73 3 10 chr12 13311516 13311804 -130474651 - AluSq SINE Alu -25 288 3 1214 143 9 9 chr12 13311806 13311971 -130474484 - AluSg/x SINE Alu -12 298 131 2182 107 10 0 chr12 13311971 13312280 -130474175 - AluSx SINE Alu 0 312 1 1214 143 9 9 chr12 13312280 13312330 -130474125 - AluSg/x SINE Alu -178 132 83 973 183 104 71 chr12 13312330 13312570 -130473885 - AluSq SINE Alu -63 250 3 2427 140 7 30 chr12 13312593 13312667 -130473788 - L1PA16 LINE L1 -64 6102 6028 2119 123 0 0 chr12 13312667 13312968 -130473487 - AluSg SINE Alu -9 301 1 2427 140 7 30 chr12 13312968 13313178 -130473277 - L1PA16 LINE L1 -138 6028 5825 1983 123 0 0 chr12 13313178 13313492 -130472963 - AluSx SINE Alu 0 314 1 2427 140 7 30 chr12 13313492 13313639 -130472816 - L1PA16 LINE L1 -341 5825 5676 627 253 145 5 chr12 13313721 13313942 -130472513 - MIR SINE MIR -1 261 10 1271 142 52 0 chr12 13313957 13314168 -130472287 - AluJo SINE Alu -6 306 85 26 21 0 42 chr12 13314168 13314191 -130472264 + AT_rich Low_complexity Low_complexity 1 23 -23 2213 90 0 0 chr12 13314191 13314479 -130471976 - AluSq SINE Alu -25 288 1 26 21 0 42 chr12 13314479 13314503 -130471952 + AT_rich Low_complexity Low_complexity 23 46 0 700 103 0 0 chr12 13314587 13314720 -130471735 + AluSg/x SINE Alu 182 314 0 255 256 98 12 chr12 13314738 13314820 -130471635 - L2 LINE L2 0 3313 3225 192 306 93 9 chr12 13314828 13314936 -130471519 + L2 LINE L2 3146 3262 -10 25 0 0 0 chr12 13315523 13315548 -130470907 + GC_rich Low_complexity Low_complexity 1 25 0 225 94 0 0 chr12 13315680 13315712 -130470743 + (GGA)n Simple_repeat Simple_repeat 1 32 0 30 0 0 0 chr12 13315766 13315796 -130470659 + AT_rich Low_complexity Low_complexity 1 30 0 204 164 0 36 chr12 13315818 13315873 -130470582 + G-rich Low_complexity Low_complexity 3 55 0 21 0 0 0 chr12 13315921 13315942 -130470513 + GC_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr12 13316224 13316246 -130470209 + (T)n Simple_repeat Simple_repeat 1 22 0 3407 141 46 22 chr12 13416607 13416880 -130369575 - MER7C DNA MER2_type -2426 602 337 2557 65 0 7 chr12 13416880 13417190 -130369265 + AluY SINE Alu 1 308 -3 3407 141 46 22 chr12 13417190 13417504 -130368951 - MER7C DNA MER2_type -2691 337 1 851 220 0 12 chr12 13417793 13417966 -130368489 + MER5B DNA MER1_type 7 177 -1 633 209 23 0 chr12 13418140 13418269 -130368186 + MER5A DNA MER1_type 2 133 -56 412 236 9 45 chr12 13419764 13419874 -130366581 + MIR SINE MIR 24 129 -79 4856 125 44 36 chr12 13420382 13421240 -130365215 - L1MA8 LINE L1 -25 6266 5402 1319 154 33 173 chr12 13421761 13422027 -130364428 + MLT1A2 LTR MaLR 11 198 -176 2357 96 0 0 chr12 13422027 13422328 -130364127 + AluSc SINE Alu 1 301 -8 1319 154 33 173 chr12 13422328 13422484 -130363971 + MLT1A2 LTR MaLR 198 374 0 366 232 20 0 chr12 13422518 13422617 -130363838 - HAL1 LINE L1 -1191 1316 1216 198 0 0 0 chr12 13422712 13422734 -130363721 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 441 233 99 80 chr12 13422816 13423042 -130363413 - MLT1L LTR MaLR -203 308 101 2210 122 0 6 chr12 13423119 13423430 -130363025 - AluSx SINE Alu -3 309 1 1160 294 123 61 chr12 13423439 13424554 -130361901 - HAL1 LINE L1 -1323 1184 1 2216 122 13 0 chr12 13425097 13425400 -130361055 - AluSx SINE Alu -5 307 1 740 251 69 0 chr12 13425816 13425991 -130360464 + L1MD1 LINE L1 589 775 -5765 * 5024 170 55 44 chr12 13425987 13426905 -130359550 + L1MD1 LINE L1 1480 2386 -4154 2065 136 7 0 chr12 13426905 13427199 -130359256 + AluSx SINE Alu 1 296 -16 5024 170 55 44 chr12 13427199 13427413 -130359042 + L1MD1 LINE L1 2386 2596 -3944 1562 164 11 28 chr12 13427413 13427700 -130358755 + AluJo SINE Alu 6 287 -25 5024 170 55 44 chr12 13427700 13427776 -130358679 + L1MD1 LINE L1 2596 2670 -3870 2081 122 0 3 chr12 13427776 13428063 -130358392 + AluSx SINE Alu 4 289 -23 5024 170 55 44 chr12 13428063 13428481 -130357974 + L1MD1 LINE L1 2670 3123 -3417 332 182 45 0 chr12 13428547 13428613 -130357842 - AluS SINE Alu -239 69 1 6615 204 32 33 chr12 13428613 13428796 -130357659 + L1MD1 LINE L1 3830 4012 -2624 1450 184 23 108 chr12 13428796 13429193 -130357262 - MLT1A1 LTR MaLR -2 363 1 6615 204 32 33 chr12 13429193 13431466 -130354989 + L1MD1 LINE L1 4012 6284 -352 2702 35 0 3 chr12 13431466 13431778 -130354677 + AluY SINE Alu 1 311 0 6615 204 32 33 chr12 13431778 13432131 -130354324 + L1MD1 LINE L1 6284 6636 0 390 214 22 129 chr12 13432188 13432366 -130354089 - MLT1H LTR MaLR -165 384 226 1752 123 0 4 chr12 13432380 13432623 -130353832 + AluSx SINE Alu 5 246 -66 2325 111 3 0 chr12 13432623 13432928 -130353527 + AluSq SINE Alu 1 307 -6 477 76 0 0 chr12 13432972 13433038 -130353417 + (CAGGA)n Simple_repeat Simple_repeat 4 69 0 209 111 83 0 chr12 13433038 13433074 -130353381 + polypurine Low_complexity Low_complexity 2 40 0 272 295 19 45 chr12 13433117 13433273 -130353182 - MLT1H LTR MaLR -375 174 23 543 206 0 0 chr12 13433440 13433615 -130352840 + (TG)n Simple_repeat Simple_repeat 2 176 0 663 169 0 0 chr12 13433635 13433807 -130352648 + (TG)n Simple_repeat Simple_repeat 2 173 0 780 175 0 0 chr12 13433824 13434097 -130352358 + (TG)n Simple_repeat Simple_repeat 1 273 0 2389 126 36 83 chr12 13434266 13434734 -130351721 - Tigger2 DNA MER2_type 0 2718 2273 465 152 0 0 chr12 13434725 13434791 -130351664 - Tigger2 DNA MER2_type -2651 67 2 * 385 296 44 7 chr12 13434975 13435110 -130351345 + MIR SINE MIR 110 249 -13 2351 76 3 3 chr12 13435193 13435495 -130350960 + AluSg SINE Alu 3 304 -6 1441 66 0 0 chr12 13436030 13436211 -130350244 + AluY SINE Alu 131 311 0 1350 64 25 136 chr12 13436445 13436680 -130349775 + MER30 DNA MER1_type 1 209 -21 461 267 181 33 chr12 13437159 13437429 -130349026 - L3 LINE CR1 -70 1507 1198 4432 134 18 1 chr12 13437845 13438507 -130347948 - L1MA7 LINE L1 0 6291 5619 897 243 7 45 chr12 13438836 13439082 -130347373 - MIR SINE MIR -7 255 15 2306 82 20 0 chr12 13439160 13439463 -130346992 - AluSp SINE Alu -4 309 1 769 329 60 7 chr12 13439484 13439767 -130346688 - L3 LINE CR1 -575 1002 705 517 274 42 99 chr12 13439779 13439969 -130346486 - MIR SINE MIR 0 262 90 2197 102 0 3 chr12 13439969 13440272 -130346183 + AluSx SINE Alu 1 302 -10 517 274 42 99 chr12 13440272 13440344 -130346111 - MIR SINE MIR -172 90 15 182 279 54 108 chr12 13440362 13440417 -130346038 - L3 LINE CR1 -894 683 627 2256 88 3 0 chr12 13440417 13440723 -130345732 + AluSg SINE Alu 1 307 -3 182 279 54 108 chr12 13440723 13440796 -130345659 - L3 LINE CR1 -950 627 562 203 358 37 0 chr12 13440824 13440905 -130345550 - MIR SINE MIR -120 142 59 296 356 205 8 chr12 13440993 13441232 -130345223 - L3 LINE CR1 -1058 519 234 1853 183 137 14 chr12 13441612 13442044 -130344411 + MER31A LTR ERV1 1 485 0 235 325 26 0 chr12 13442168 13442245 -130344210 - MIR SINE MIR -183 79 1 2200 72 3 23 chr12 13442296 13442600 -130343855 + AluSq SINE Alu 1 298 -15 791 179 98 98 chr12 13442717 13443124 -130343331 - LTR37A LTR ERV1 -1 425 19 2290 74 10 0 chr12 13443224 13443522 -130342933 + AluSp SINE Alu 1 301 -12 307 259 37 56 chr12 13443580 13443688 -130342767 + MIR SINE MIR 12 117 -145 1968 104 13 23 chr12 13443690 13443998 -130342457 - AluSx SINE Alu -5 307 3 1478 88 23 9 chr12 13444002 13444219 -130342236 - AluSx SINE Alu -11 301 82 2215 68 48 6 chr12 13444220 13444531 -130341924 + LTR7 LTR ERV1 125 448 -2 20842 89 15 23 chr12 13444533 13447552 -130338903 + HERVH LTR ERV1 1 2995 -4718 931 135 20 0 chr12 13447531 13447679 -130338776 + HERVH LTR ERV1 3140 3290 -4423 * 3512 103 4 6 chr12 13447669 13448172 -130338283 + HERVH LTR ERV1 3492 3993 -3720 4487 140 0 1 chr12 13448174 13448837 -130337618 + HERVH LTR ERV1 4488 5149 -2564 1424 130 19 0 chr12 13448838 13449054 -130337401 + HERVH LTR ERV1 5600 5819 -1894 * 2409 95 50 13 chr12 13449052 13449430 -130337025 + HERVH LTR ERV1 7322 7713 0 2394 92 148 5 chr12 13449430 13449822 -130336633 + LTR7 LTR ERV1 1 448 -2 522 137 0 0 chr12 13449824 13449897 -130336558 - AluSx SINE Alu -239 74 2 1168 134 69 56 chr12 13449900 13450131 -130336324 - AluJo SINE Alu -20 292 59 337 246 0 0 chr12 13450178 13450247 -130336208 + MIR SINE MIR 101 169 -93 1244 189 139 99 chr12 13450763 13450998 -130335457 - MER34B LTR ERV1 0 565 341 2123 110 0 13 chr12 13450998 13451308 -130335147 + AluSx SINE Alu 1 306 -6 1244 189 139 99 chr12 13451308 13451528 -130334927 - MER34B LTR ERV1 -224 341 86 2254 106 3 0 chr12 13451528 13451839 -130334616 - AluSx SINE Alu 0 312 1 1244 189 139 99 chr12 13451839 13451885 -130334570 - MER34B LTR ERV1 -479 86 43 370 274 116 0 chr12 13452304 13452450 -130334005 + L1ME LINE L1 5583 5745 -376 2355 62 17 0 chr12 13452464 13452756 -130333699 - AluY SINE Alu -12 299 3 793 114 0 0 chr12 13452811 13452925 -130333530 - AluSg/x SINE Alu -10 300 187 1968 134 0 3 chr12 13453016 13453314 -130333141 + AluSx SINE Alu 1 297 -15 235 163 0 23 chr12 13453337 13453380 -130333075 - MER34B LTR ERV1 -466 99 58 1667 131 7 44 chr12 13453689 13453987 -130332468 - AluJb SINE Alu -19 293 7 180 77 0 0 chr12 13454117 13454143 -130332312 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1070 209 178 4 chr12 13454153 13454406 -130332049 - AluJo SINE Alu -4 298 2 22 0 0 0 chr12 13454406 13454428 -130332027 + AT_rich Low_complexity Low_complexity 1 22 0 2345 194 28 20 chr12 13454447 13454954 -130331501 - MER41B LTR ERV1 -9 597 100 502 168 0 65 chr12 13454983 13455090 -130331365 - AluJb SINE Alu -207 105 6 2353 52 0 29 chr12 13455166 13455473 -130330982 + AluY SINE Alu 1 298 -13 525 259 124 11 chr12 13456022 13456151 -130330304 + MIR SINE MIR 51 209 -53 2057 87 31 3 chr12 13456151 13456439 -130330016 + AluSx SINE Alu 1 296 -16 525 259 124 11 chr12 13456439 13456494 -130329961 + MIR SINE MIR 209 256 -6 1851 121 44 3 chr12 13458625 13458922 -130327533 - AluJo SINE Alu -2 310 2 318 167 0 0 chr12 13459305 13459365 -130327090 + (CA)n Simple_repeat Simple_repeat 1 60 0 484 167 0 192 chr12 13459736 13459970 -130326485 + MER53 DNA DNA 1 189 0 287 200 55 0 chr12 13459981 13460036 -130326419 - L2 LINE L2 0 3313 3256 257 35 0 0 chr12 13460039 13460068 -130326387 + tRNA-Lys-AAA tRNA tRNA 1 29 -47 184 148 315 0 chr12 13460069 13460123 -130326332 - L2 LINE L2 -46 3267 3197 2088 125 23 0 chr12 13460182 13460487 -130325968 - AluSx SINE Alu 0 312 1 694 194 0 22 chr12 13460552 13460686 -130325769 - AluJo SINE Alu -176 136 6 358 274 65 48 chr12 13460690 13460859 -130325596 - L1MC5 LINE L1 -298 7663 7489 1602 153 80 0 chr12 13460859 13461146 -130325309 - AluSg SINE Alu 0 310 1 358 274 65 48 chr12 13461146 13461162 -130325293 - L1MC5 LINE L1 -472 7489 7475 2271 87 6 0 chr12 13461162 13461473 -130324982 - AluSp SINE Alu 0 313 1 796 211 35 31 chr12 13461474 13461702 -130324753 - L1MC5 LINE L1 -432 7529 7301 231 332 47 1 chr12 13462611 13462732 -130323723 - MIR SINE MIR -17 191 61 1681 159 24 10 chr12 13463008 13463303 -130323152 + AluJo SINE Alu 1 299 -13 411 339 54 6 chr12 13463360 13463546 -130322909 - MIR SINE MIR -32 230 38 216 263 25 38 chr12 13463834 13463914 -130322541 + L2 LINE L2 2692 2770 -544 222 322 0 22 chr12 13463994 13464084 -130322371 + GA-rich Low_complexity Low_complexity 6 93 0 2088 105 3 0 chr12 13464548 13464842 -130321613 - AluSg SINE Alu -14 296 2 2264 65 7 3 chr12 13465673 13465964 -130320491 + AluY SINE Alu 3 294 -17 2153 119 0 3 chr12 13466087 13466389 -130320066 + AluSg SINE Alu 1 301 -9 186 337 11 11 chr12 13466439 13466531 -130319924 + MIR SINE MIR 97 188 -74 1671 157 0 11 chr12 13466652 13466933 -130319522 + AluJb SINE Alu 3 280 -32 1478 168 3 28 chr12 13466933 13467222 -130319233 + AluJo SINE Alu 17 300 -12 2163 98 0 13 chr12 13467300 13467605 -130318850 - AluSg SINE Alu -9 301 1 186 207 91 91 chr12 13467840 13467961 -130318494 - MIR3 SINE MIR -44 164 44 2365 80 0 0 chr12 13468701 13469012 -130317443 - AluY SINE Alu 0 311 1 735 246 41 100 chr12 13469253 13469411 -130317044 - MLT1J LTR MaLR -6 505 395 1573 178 0 11 chr12 13469411 13469687 -130316768 + AluSx SINE Alu 1 273 -39 735 246 41 100 chr12 13469687 13469850 -130316605 - MLT1J LTR MaLR -116 395 224 800 155 31 0 chr12 13469877 13470006 -130316449 - AluJb SINE Alu -178 134 2 398 247 165 28 chr12 13470012 13470194 -130316261 - MLT1J LTR MaLR -295 216 10 1953 85 0 41 chr12 13470560 13470853 -130315602 + AluSx SINE Alu 23 303 -9 1645 178 0 13 chr12 13471788 13472091 -130314364 + AluJo SINE Alu 9 307 -5 3071 164 20 63 chr12 13473805 13474444 -130312011 - LTR9 LTR ERV1 0 612 1 244 173 19 0 chr12 13474781 13474833 -130311622 - MER4A LTR ERV1 0 664 612 2132 118 0 6 chr12 13474833 13475147 -130311308 + AluSq SINE Alu 1 312 -1 2022 105 0 7 chr12 13475164 13475440 -130311015 + AluSx SINE Alu 3 276 -36 2106 118 0 9 chr12 13476097 13476412 -130310043 + AluSq SINE Alu 2 313 0 373 276 88 119 chr12 13477392 13477871 -130308584 + L3 LINE CR1 1111 1574 -3 813 152 8 0 chr12 13479099 13479224 -130307231 + FLAM_C SINE Alu 1 126 -7 2238 113 0 0 chr12 13479262 13479571 -130306884 + AluSx SINE Alu 4 312 0 1653 157 43 17 chr12 13479582 13479882 -130306573 + AluJb SINE Alu 1 308 -4 439 244 56 56 chr12 13479884 13480044 -130306411 - MIR SINE MIR -90 172 13 241 262 252 29 chr12 13480076 13480179 -130306276 + L2 LINE L2 3146 3271 -1 21 0 0 0 chr12 13480735 13480756 -130305699 + AT_rich Low_complexity Low_complexity 1 21 0 3987 168 63 32 chr12 13482097 13482610 -130303845 + L1MB7 LINE L1 5101 5597 -587 2430 58 0 6 chr12 13482610 13482922 -130303533 + AluY SINE Alu 1 310 -1 3987 168 63 32 chr12 13482922 13483451 -130303004 + L1MB7 LINE L1 5597 6176 -8 208 349 40 60 chr12 13484073 13484222 -130302233 + L2 LINE L2 3127 3272 0 223 283 0 0 chr12 13485474 13485534 -130300921 + MIR SINE MIR 175 234 -28 2224 92 0 16 chr12 13485967 13486283 -130300172 - AluY SINE Alu 0 311 1 326 325 39 132 chr12 13486316 13486747 -130299708 + L2 LINE L2 2847 3237 -35 189 260 10 125 chr12 13486741 13486845 -130299610 - MER5A DNA MER1_type -53 136 45 * 370 239 18 26 chr12 13486863 13486976 -130299479 + L1MEc LINE L1 43 154 -6242 1118 45 0 0 chr12 13486986 13487118 -130299337 - AluY SINE Alu -179 132 1 4876 226 115 47 chr12 13487140 13488413 -130298042 + L1MEc LINE L1 167 1352 -4863 360 0 0 0 chr12 13488413 13488453 -130298002 + (CA)n Simple_repeat Simple_repeat 2 41 0 4876 226 115 47 chr12 13488453 13488855 -130297600 + L1MEc LINE L1 1352 1725 -4490 2120 123 3 0 chr12 13488855 13489147 -130297308 + AluSx SINE Alu 1 293 -19 4876 226 115 47 chr12 13489147 13489509 -130296946 + L1MEc LINE L1 1725 2061 -4154 1496 150 30 34 chr12 13489509 13489776 -130296679 + AluJb SINE Alu 37 302 -10 4876 226 115 47 chr12 13489776 13489877 -130296578 + L1MEc LINE L1 2061 2154 -4061 2107 146 97 5 chr12 13489877 13490267 -130296188 + MSTB LTR MaLR 1 426 0 4876 226 115 47 chr12 13490267 13491074 -130295381 + L1MEc LINE L1 2154 3333 -2882 493 260 81 45 chr12 13491054 13491362 -130295093 + L1MEc LINE L1 1625 1943 -4453 * 1933 133 0 4 chr12 13491365 13491643 -130294812 + AluSx SINE Alu 1 277 -35 9200 139 65 57 chr12 13491684 13492849 -130293606 + L1M4c LINE L1 1 1155 -5229 2499 62 0 3 chr12 13492849 13493155 -130293300 + AluY SINE Alu 1 305 -6 9200 139 65 57 chr12 13493155 13493174 -130293281 + L1M4c LINE L1 1155 1172 -5212 4766 171 78 27 chr12 13493174 13494144 -130292311 - LTR28 LTR ERV1 0 1020 1 9200 139 65 57 chr12 13494144 13494654 -130291801 + L1M4c LINE L1 1172 1676 -4708 2646 92 19 8 chr12 13494654 13495025 -130291430 - THE1C LTR MaLR 0 375 1 9200 139 65 57 chr12 13495025 13495211 -130291244 + L1M4c LINE L1 1676 1859 -4525 1945 130 36 11 chr12 13495211 13495488 -130290967 - AluSx SINE Alu -23 289 6 9200 139 65 57 chr12 13495488 13495532 -130290923 + L1M4c LINE L1 1859 1901 -4483 2103 117 13 16 chr12 13495532 13495841 -130290614 - AluY SINE Alu -3 308 1 2431 75 7 0 chr12 13495842 13496137 -130290318 - AluSx SINE Alu -15 297 1 9200 139 65 57 chr12 13496137 13496168 -130290287 + L1M4c LINE L1 1901 1930 -4454 2853 16 0 3 chr12 13496168 13496486 -130289969 - AluYb8 SINE Alu -1 317 1 9200 139 65 57 chr12 13496486 13496615 -130289840 + L1M4c LINE L1 1930 2109 -4275 821 155 0 0 chr12 13496615 13496731 -130289724 + AluJb SINE Alu 1 116 -196 216 100 0 25 chr12 13496787 13496827 -130289628 + (CCG)n Simple_repeat Simple_repeat 3 41 0 198 256 0 0 chr12 13497066 13497144 -130289311 + GA-rich Low_complexity Low_complexity 3 80 0 1282 167 0 9 chr12 13497938 13498174 -130288281 + AluJb SINE Alu 105 338 0 644 205 90 42 chr12 13498179 13498396 -130288059 - MER39 LTR ERV1 -82 625 420 2326 81 7 0 chr12 13498396 13498694 -130287761 - AluSx SINE Alu -12 300 1 644 205 90 42 chr12 13498694 13498760 -130287695 - MER39 LTR ERV1 -287 420 142 232 239 90 0 chr12 13498853 13498920 -130287535 - MER39 LTR ERV1 -631 76 4 299 262 168 0 chr12 13498960 13499109 -130287346 + L1M4 LINE L1 3325 3498 -2648 2226 98 10 3 chr12 13499576 13499871 -130286584 + AluSc SINE Alu 1 297 -12 1823 132 0 14 chr12 13500046 13500326 -130286129 - AluSq SINE Alu -6 307 32 491 214 68 0 chr12 13500446 13500549 -130285906 - FLAM_A SINE Alu -32 110 1 757 180 0 29 chr12 13501524 13501663 -130284792 - AluJb SINE Alu -26 286 152 30 0 0 0 chr12 13502697 13502727 -130283728 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr12 13505092 13505127 -130281328 + AT_rich Low_complexity Low_complexity 1 35 0 477 0 0 0 chr12 13505739 13505792 -130280663 + (TA)n Simple_repeat Simple_repeat 2 54 0 484 92 53 0 chr12 13508282 13508358 -130278097 + HY1 scRNA scRNA 33 112 0 1555 126 0 9 chr12 13508376 13508606 -130277849 + AluJo SINE Alu 81 308 -4 2331 84 7 7 chr12 13509840 13510138 -130276317 + AluSq SINE Alu 1 298 -15 27 0 0 0 chr12 13510418 13510445 -130276010 + AT_rich Low_complexity Low_complexity 1 27 0 768 316 105 32 chr12 13513761 13514322 -130272133 + L2 LINE L2 1762 2363 -951 203 382 141 5 chr12 13514532 13514731 -130271724 + L2 LINE L2 2403 2628 -686 292 259 71 0 chr12 13514731 13514816 -130271639 - MER112 DNA MER1_type -12 248 158 2397 72 3 0 chr12 13515301 13515592 -130270863 - AluSg SINE Alu -12 298 7 190 232 71 89 chr12 13515743 13515855 -130270600 - MIR SINE MIR -27 235 126 326 159 14 58 chr12 13515855 13515924 -130270531 + AluJ/FLAM SINE Alu 22 87 -215 2409 89 3 0 chr12 13515930 13516234 -130270221 - AluSx SINE Alu -7 305 1 2653 42 0 3 chr12 13516846 13517156 -130269299 - AluY SINE Alu -2 309 1 1623 219 75 38 chr12 13518172 13518679 -130267776 + Charlie1a DNA MER1_type 7 532 -923 2157 119 127 21 chr12 13518984 13519371 -130267084 + MSTA LTR MaLR 1 428 0 462 138 58 0 chr12 13519613 13519700 -130266755 - L1MB3 LINE L1 -13 6170 6079 1022 142 71 14 chr12 13520544 13520756 -130265699 + L1MA7 LINE L1 5773 5996 -295 265 222 28 14 chr12 13521055 13521127 -130265328 + GA-rich Low_complexity Low_complexity 3 75 0 1335 167 0 0 chr12 13521192 13521460 -130264995 - AluSg/x SINE Alu 0 350 83 28 0 0 0 chr12 13521548 13521576 -130264879 + AT_rich Low_complexity Low_complexity 1 28 0 2150 118 3 10 chr12 13521651 13521957 -130264498 + AluSx SINE Alu 1 304 -8 197 146 21 62 chr12 13523033 13523081 -130263374 - MIR SINE MIR -38 224 179 2142 112 0 26 chr12 13523629 13523932 -130262523 + AluSx SINE Alu 1 295 -17 433 263 233 25 chr12 13524723 13524963 -130261492 - L3 LINE CR1 -63 1514 1225 515 239 94 91 chr12 13525113 13525190 -130261265 + HAL1 LINE L1 14 89 -2418 1942 156 13 0 chr12 13525190 13525498 -130260957 + AluJb SINE Alu 1 312 0 515 239 94 91 chr12 13525498 13525772 -130260683 + HAL1 LINE L1 89 366 -2141 940 236 128 33 chr12 13525789 13526306 -130260149 + HAL1 LINE L1 802 1367 -1140 2160 115 0 0 chr12 13526354 13526650 -130259805 - AluSg SINE Alu -14 296 1 269 256 39 31 chr12 13526740 13526869 -130259586 + L1M4 LINE L1 3960 4089 -2057 344 287 41 16 chr12 13526869 13526991 -130259464 + GA-rich Low_complexity Low_complexity 4 128 0 601 286 169 24 chr12 13526992 13527502 -130258953 + HAL1 LINE L1 1384 1967 -540 382 263 133 40 chr12 13527682 13527982 -130258473 + HAL1 LINE L1 2180 2507 0 1613 249 121 38 chr12 13528321 13529511 -130256944 + L1M4 LINE L1 3589 5025 -1121 489 130 71 110 chr12 13529580 13529734 -130256721 - L1PB4 LINE L1 0 6156 6009 509 271 53 14 chr12 13529737 13529944 -130256511 + L1M4 LINE L1 5084 5298 -848 433 91 0 91 chr12 13529969 13530046 -130256409 - AluJ/FRAM SINE Alu -24 288 219 1932 161 13 3 chr12 13530111 13530409 -130256046 + AluJo SINE Alu 2 302 -10 2821 59 14 0 chr12 13530461 13530817 -130255638 + L1PA6 LINE L1 5792 6152 -2 264 115 16 33 chr12 13531248 13531309 -130255146 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 2176 120 6 16 chr12 13531364 13531680 -130254775 - AluSq SINE Alu 0 313 1 421 307 110 20 chr12 13531896 13532196 -130254259 - L1ME LINE L1 -399 5722 5396 1793 88 118 8 chr12 13532620 13532882 -130253573 + AluSc SINE Alu 2 292 -17 1810 173 0 10 chr12 13533438 13533727 -130252728 + AluJo SINE Alu 1 286 -26 222 248 0 0 chr12 13533727 13533852 -130252603 + (TA)n Simple_repeat Simple_repeat 2 126 0 987 186 52 9 chr12 13535254 13535464 -130250991 + MER20 DNA MER1_type 1 219 0 646 301 136 11 chr12 13536837 13537123 -130249332 - L3 LINE CR1 -872 705 384 287 298 126 10 chr12 13537241 13537374 -130249081 + MIR SINE MIR 42 185 -61 38 51 0 0 chr12 13537414 13537473 -130248982 + AT_rich Low_complexity Low_complexity 1 59 0 836 97 9 0 chr12 13537473 13537586 -130248869 - FLAM_C SINE Alu -25 118 5 25 0 0 0 chr12 13537590 13537615 -130248840 + AT_rich Low_complexity Low_complexity 1 25 0 2196 105 48 0 chr12 13537752 13538085 -130248370 + THE1A LTR MaLR 1 349 -6 1910 105 0 0 chr12 13538085 13538333 -130248122 - AluSg SINE Alu -62 248 1 660 189 0 0 chr12 13538955 13539066 -130247389 + FLAM_C SINE Alu 1 111 -32 588 315 115 0 chr12 13539672 13539837 -130246618 + MER91A DNA MER1_type 1 184 -12 1220 284 160 7 chr12 13539858 13540284 -130246171 + L2 LINE L2 2805 3295 -18 706 233 0 0 chr12 13540332 13540465 -130245990 + FLAM_A SINE Alu 1 133 0 180 283 0 0 chr12 13540616 13540662 -130245793 - MIR SINE MIR -112 150 105 2066 128 0 0 chr12 13540662 13540967 -130245488 + AluSx SINE Alu 1 305 0 223 274 0 0 chr12 13541565 13541616 -130244839 - MIR SINE MIR -148 114 64 941 266 26 117 chr12 13541650 13542286 -130244169 - L2 LINE L2 0 3313 2748 492 300 140 30 chr12 13542281 13542581 -130243874 + L2 LINE L2 1769 2101 -1213 * 593 221 23 81 chr12 13542649 13542821 -130243634 + MER58A DNA MER1_type 16 177 -47 218 299 165 10 chr12 13542839 13542936 -130243519 + L2 LINE L2 2158 2269 -1045 442 261 109 33 chr12 13542961 13543145 -130243310 + L2 LINE L2 2448 2645 -669 509 237 37 15 chr12 13543169 13543304 -130243151 - MIR SINE MIR -60 202 65 1670 179 7 3 chr12 13544075 13544360 -130242095 - AluJo SINE Alu -14 298 13 23 54 0 0 chr12 13545721 13545758 -130240697 + AT_rich Low_complexity Low_complexity 1 37 0 315 277 41 49 chr12 13546410 13546538 -130239917 - MIR SINE MIR -67 141 49 2127 110 0 17 chr12 13547018 13547319 -130239136 - AluSg SINE Alu -14 296 1 211 292 44 71 chr12 13548648 13548730 -130237725 - MIR SINE MIR -34 228 148 2159 119 0 3 chr12 13548730 13549025 -130237430 - AluSx SINE Alu -18 294 1 211 292 44 71 chr12 13549025 13549055 -130237400 - MIR SINE MIR -114 148 119 2275 85 7 0 chr12 13549600 13549894 -130236561 + AluSg SINE Alu 1 296 -14 324 0 0 0 chr12 13550668 13550704 -130235751 + (A)n Simple_repeat Simple_repeat 1 36 0 1601 181 4 8 chr12 13552564 13552829 -130233626 + AluJo SINE Alu 1 264 -48 2399 65 0 3 chr12 13553112 13553403 -130233052 + AluSc SINE Alu 3 292 -17 22 70 0 0 chr12 13553594 13553637 -130232818 + AT_rich Low_complexity Low_complexity 1 43 0 908 217 95 70 chr12 13554516 13554695 -130231760 - MER46C DNA MER2_type -1 337 144 2133 109 3 0 chr12 13554695 13555008 -130231447 + AluSq SINE Alu 1 314 0 908 217 95 70 chr12 13555008 13555154 -130231301 - MER46C DNA MER2_type -194 144 3 886 181 34 124 chr12 13555701 13555815 -130230640 - MER33 DNA MER1_type -2261 324 201 1852 134 15 0 chr12 13555815 13556084 -130230371 + AluSx SINE Alu 15 287 -25 886 181 34 124 chr12 13556084 13556323 -130230132 - MER33 DNA MER1_type -2384 201 3 369 0 0 0 chr12 13556540 13556581 -130229874 + (CA)n Simple_repeat Simple_repeat 1 41 0 2226 84 0 20 chr12 13556983 13557320 -130229135 + AluY SINE Alu 1 331 0 1741 181 0 10 chr12 13559093 13559391 -130227064 - AluJb SINE Alu -17 295 1 700 137 14 72 chr12 13559391 13559530 -130226925 - AluJo SINE Alu -177 135 5 2204 105 7 0 chr12 13559863 13560159 -130226296 - AluSx SINE Alu -14 298 1 2208 120 0 0 chr12 13560855 13561156 -130225299 + AluSx SINE Alu 1 301 -11 2160 98 6 28 chr12 13561156 13561510 -130224945 + AluY SINE Alu 1 311 0 2341 86 7 0 chr12 13562592 13562894 -130223561 - AluSq SINE Alu -9 304 1 285 128 0 0 chr12 13563626 13563673 -130222782 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 223 128 51 0 chr12 13563753 13563792 -130222663 + (TATG)n Simple_repeat Simple_repeat 2 42 0 294 147 0 0 chr12 13565112 13565180 -130221275 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 186 43 0 0 chr12 13565986 13566009 -130220446 + (T)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr12 13567269 13567299 -130219156 + AT_rich Low_complexity Low_complexity 1 30 0 610 176 0 44 chr12 13567598 13567734 -130218721 + L1MB7 LINE L1 6044 6173 -11 362 251 301 10 chr12 13567834 13568033 -130218422 + MIR SINE MIR 6 262 0 207 0 0 0 chr12 13570138 13570161 -130216294 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1751 155 41 14 chr12 13570761 13571052 -130215403 + AluJb SINE Alu 1 299 -13 2296 88 3 10 chr12 13571589 13571895 -130214560 - AluSq SINE Alu -9 304 1 1883 133 4 4 chr12 13572131 13572402 -130214053 - AluSx SINE Alu -15 297 27 1003 92 0 0 chr12 13572407 13572538 -130213917 - AluSg/x SINE Alu -12 300 170 2418 71 3 7 chr12 13573678 13573986 -130212469 + AluSg1 SINE Alu 1 307 -2 213 279 0 33 chr12 13574097 13574158 -130212297 + GA-rich Low_complexity Low_complexity 2 60 0 256 293 194 31 chr12 13574895 13575086 -130211369 + MIR SINE MIR 11 232 -30 2267 96 3 3 chr12 13575257 13575549 -130210906 - AluSx SINE Alu -20 292 1 25 65 0 0 chr12 13577596 13577642 -130208813 + AT_rich Low_complexity Low_complexity 1 46 0 4822 253 84 31 chr12 13577684 13579993 -130206462 + L1MEc LINE L1 1734 4109 -2106 376 257 36 117 chr12 13580007 13580229 -130206226 - L1ME3 LINE L1 0 6162 5959 6376 141 28 5 chr12 13580350 13582344 -130204111 - L1MA5A LINE L1 -7 6290 4255 1837 230 93 58 chr12 13582433 13583155 -130203300 - L1MC5 LINE L1 -541 7420 6674 1486 147 4 9 chr12 13583510 13583741 -130202714 + AluJb SINE Alu 1 230 -82 1529 129 28 0 chr12 13583746 13583963 -130202492 - AluSq SINE Alu -88 225 3 2321 97 3 0 chr12 13584271 13584570 -130201885 - AluSx SINE Alu 0 312 13 28 29 0 0 chr12 13584639 13584674 -130201781 + AT_rich Low_complexity Low_complexity 1 35 0 2419 90 0 3 chr12 13585432 13585743 -130200712 + AluSg SINE Alu 1 310 0 232 237 13 53 chr12 13586938 13587014 -130199441 + (CTATT)n Simple_repeat Simple_repeat 4 76 0 616 229 137 44 chr12 13587953 13588011 -130198444 + MER58A DNA MER1_type 1 52 -2368 1705 172 4 4 chr12 13588011 13588318 -130198137 + AluJb SINE Alu 3 309 0 616 229 137 44 chr12 13588318 13588462 -130197993 + MER58A DNA MER1_type 52 224 0 382 204 94 105 chr12 13588525 13588706 -130197749 - MER20B DNA MER1_type -604 179 1 2102 113 0 11 chr12 13589233 13589551 -130196904 + AluSc SINE Alu 1 315 0 1457 267 47 64 chr12 13589607 13590251 -130196204 + L1MC4 LINE L1 7168 7800 -242 400 77 0 0 chr12 13590389 13590441 -130196014 + Alu SINE Alu 1 52 -250 2216 70 20 37 chr12 13590441 13590740 -130195715 + AluSq SINE Alu 20 313 0 2075 115 39 16 chr12 13590795 13591100 -130195355 + AluSx SINE Alu 1 312 0 494 280 80 14 chr12 13591313 13591517 -130194938 - MIR SINE MIR -23 239 27 1654 184 78 0 chr12 13591645 13591965 -130194490 + MER7A DNA MER2_type 3 345 -1 2510 63 0 3 chr12 13592009 13592312 -130194143 + AluY SINE Alu 1 302 -9 708 185 7 41 chr12 13592375 13592521 -130193934 + FLAM_C SINE Alu 1 141 -2 343 251 71 39 chr12 13592708 13592908 -130193547 + L1M4b LINE L1 105 536 -6319 1625 121 0 64 chr12 13592985 13593250 -130193205 + AluSc SINE Alu 1 248 -61 228 35 0 0 chr12 13593269 13593298 -130193157 + (TAA)n Simple_repeat Simple_repeat 2 30 0 352 274 82 78 chr12 13593524 13593805 -130192650 + L1M4b LINE L1 1050 1331 -5524 792 208 93 45 chr12 13593809 13594159 -130192296 + L1ME2 LINE L1 5774 6161 -5 213 315 41 14 chr12 13594202 13594275 -130192180 + L2 LINE L2 3015 3089 -183 260 374 169 24 chr12 13595493 13595830 -130190625 - L2 LINE L2 -25 3247 2862 2018 126 0 24 chr12 13596903 13597197 -130189258 + AluSg SINE Alu 1 287 -23 329 246 60 90 chr12 13597855 13597989 -130188466 + L2 LINE L2 3169 3298 -15 38 22 0 0 chr12 13599010 13599055 -130187400 + AT_rich Low_complexity Low_complexity 1 45 0 1992 174 107 9 chr12 13600486 13600905 -130185550 + LOR1b LTR ERV1 1 460 -1 851 94 0 0 chr12 13601164 13601297 -130185158 - AluSq SINE Alu 0 310 178 873 40 0 0 chr12 13601298 13601399 -130185056 - AluSq SINE Alu -211 101 1 2202 101 7 0 chr12 13601478 13601765 -130184690 + AluSq SINE Alu 1 289 -24 295 313 78 57 chr12 13602145 13602337 -130184118 - L2 LINE L2 -702 2612 2417 183 80 0 0 chr12 13602404 13602429 -130184026 + (A)n Simple_repeat Simple_repeat 1 25 0 206 103 51 0 chr12 13602568 13602607 -130183848 + C-rich Low_complexity Low_complexity 1 41 0 3620 136 4 2 chr12 13602799 13603323 -130183132 + MER1A DNA MER1_type 3 527 0 2209 210 64 33 chr12 13603357 13603941 -130182514 + L1M4 LINE L1 4714 5278 -896 1577 201 0 14 chr12 13603941 13604268 -130182187 + AluJo SINE Alu 3 325 0 2209 210 64 33 chr12 13604268 13604431 -130182024 + L1M4 LINE L1 5278 5477 -697 824 196 0 25 chr12 13604431 13604594 -130181861 + FRAM SINE Alu 1 159 -7 2209 210 64 33 chr12 13604594 13604705 -130181750 + L1M4 LINE L1 5477 5583 -591 839 74 9 0 chr12 13604705 13604813 -130181642 + AluSq/x SINE Alu 1 109 -203 343 182 0 0 chr12 13604816 13604882 -130181573 + Alu SINE Alu 228 293 -7 2170 92 10 7 chr12 13604946 13605251 -130181204 - AluSc SINE Alu -3 306 1 2144 124 0 3 chr12 13605753 13606052 -130180403 + AluSx SINE Alu 1 298 -14 423 250 94 44 chr12 13606153 13606333 -130180122 + LTR67 LTR ERVL 362 550 -7 2005 158 0 3 chr12 13606338 13606648 -130179807 - AluJb SINE Alu -3 309 1 585 264 11 51 chr12 13607254 13607432 -130179023 - MER5B DNA MER1_type -7 171 1 2399 84 3 6 chr12 13608032 13608343 -130178112 + AluSx SINE Alu 1 310 -2 692 108 20 0 chr12 13608359 13608461 -130177994 - Tigger7 DNA MER2_type -19 2472 2369 2201 160 17 52 chr12 13609491 13610011 -130176444 - L1MC3 LINE L1 -1203 6582 6081 2040 93 0 28 chr12 13610671 13610960 -130175495 + AluSx SINE Alu 1 281 -31 2293 261 71 58 chr12 13610982 13611344 -130175111 + L1MCa LINE L1 46 402 -6024 2127 125 0 0 chr12 13611344 13611633 -130174822 + AluSx SINE Alu 7 295 -17 2293 261 71 58 chr12 13611633 13612418 -130174037 + L1MCa LINE L1 402 1208 -5218 6968 155 136 54 chr12 13612598 13612954 -130173501 + L1MCa LINE L1 51 376 -6050 2144 124 0 0 chr12 13612954 13613245 -130173210 + AluSx SINE Alu 7 297 -15 6968 155 136 54 chr12 13613245 13614032 -130172423 + L1MCa LINE L1 376 1097 -5329 597 146 39 0 chr12 13614032 13614135 -130172320 + U6 snRNA snRNA 1 107 0 6968 155 136 54 chr12 13614135 13614758 -130171697 + L1MCa LINE L1 1097 1991 -4435 2307 110 0 3 chr12 13614758 13615067 -130171388 - AluSq SINE Alu -5 308 1 6968 155 136 54 chr12 13615067 13615215 -130171240 + L1MCa LINE L1 1991 2125 -4301 1932 119 31 7 chr12 13615447 13615741 -130170714 + AluSx SINE Alu 1 301 -11 1901 123 32 41 chr12 13615872 13616212 -130170243 + MER1B DNA MER1_type 1 337 0 2307 113 3 0 chr12 13616447 13616758 -130169697 + AluSp SINE Alu 1 312 -1 957 263 98 89 chr12 13618049 13618259 -130168196 + L1MEd LINE L1 1 208 -5911 2451 91 0 0 chr12 13618259 13618567 -130167888 + AluSg SINE Alu 1 308 -2 957 263 98 89 chr12 13618567 13618915 -130167540 + L1MEd LINE L1 208 564 -5555 233 154 0 0 chr12 13618981 13619020 -130167435 + Alu SINE Alu 2 40 -263 1766 170 55 0 chr12 13619097 13619386 -130167069 + AluJb SINE Alu 7 311 -1 317 133 50 0 chr12 13619386 13619446 -130167009 + L1ME2 LINE L1 6092 6154 -10 2272 97 0 3 chr12 13619460 13619759 -130166696 + AluY SINE Alu 1 298 -13 450 293 78 34 chr12 13619762 13620083 -130166372 + L1MEd LINE L1 563 897 -5222 560 276 85 77 chr12 13620403 13620546 -130165909 + L1MC5 LINE L1 7262 7402 -559 2254 100 0 3 chr12 13620546 13620837 -130165618 + AluY SINE Alu 3 292 -19 560 276 85 77 chr12 13620837 13621211 -130165244 + L1MC5 LINE L1 7402 7783 -178 593 196 43 0 chr12 13621225 13621363 -130165092 + L1MC4a LINE L1 5732 5875 -1933 2226 99 10 0 chr12 13621366 13621659 -130164796 + AluSp SINE Alu 1 296 -17 1182 125 0 0 chr12 13621659 13621819 -130164636 + AluSg/x SINE Alu 132 291 -19 304 244 23 12 chr12 13621819 13621905 -130164550 + L1MC4a LINE L1 5869 5955 -1853 2152 111 17 0 chr12 13621909 13622198 -130164257 + AluSg SINE Alu 1 294 -16 591 236 8 44 chr12 13622233 13622483 -130163972 + L1MC4a LINE L1 5930 6170 -1638 * 2203 181 15 97 chr12 13622476 13622806 -130163649 + L1MC4a LINE L1 6379 6735 -1073 2414 80 3 3 chr12 13622806 13623118 -130163337 + AluSp SINE Alu 1 312 -1 2203 181 15 97 chr12 13623118 13623302 -130163153 + L1MC4a LINE L1 6735 6831 -977 2243 56 0 7 chr12 13623302 13623620 -130162835 + AluY SINE Alu 1 316 0 2203 181 15 97 chr12 13623620 13623761 -130162694 + L1MC4a LINE L1 6831 6982 -826 2629 196 132 36 chr12 13623783 13624527 -130161928 - MER21B LTR ERV1 -30 833 19 494 149 11 11 chr12 13624552 13624639 -130161816 - MER21B LTR ERV1 -776 87 1 2790 196 86 21 chr12 13624639 13625406 -130161049 + L1MC4a LINE L1 6978 7794 -14 325 262 62 39 chr12 13625477 13625888 -130160567 + L1MEd LINE L1 919 1374 -4862 353 298 61 22 chr12 13625971 13626152 -130160303 + L1MEd LINE L1 1481 1668 -4642 249 268 0 73 chr12 13626413 13626495 -130159960 + MIR3 SINE MIR 117 192 -16 205 167 0 0 chr12 13627386 13627422 -130159033 + (CA)n Simple_repeat Simple_repeat 2 37 0 2255 82 3 0 chr12 13627650 13627958 -130158497 + AluY SINE Alu 1 309 0 21 0 0 0 chr12 13628810 13628831 -130157624 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 13630700 13630722 -130155733 + AT_rich Low_complexity Low_complexity 1 22 0 840 110 8 39 chr12 13630990 13631117 -130155338 + AluJb SINE Alu 3 125 -187 1136 135 0 0 chr12 13631120 13631276 -130155179 - AluSg/x SINE Alu -23 287 132 848 197 13 7 chr12 13631294 13631446 -130155009 + AluJb SINE Alu 135 287 -25 2103 213 58 56 chr12 13632261 13632957 -130153498 + L1ME1 LINE L1 5466 6162 -4 783 174 38 80 chr12 13633217 13633355 -130153100 + MER3 DNA MER1_type 6 133 -76 2321 87 0 13 chr12 13633355 13633665 -130152790 - AluSq SINE Alu -7 306 1 783 174 38 80 chr12 13633665 13633738 -130152717 + MER3 DNA MER1_type 133 208 -1 1385 129 188 28 chr12 13633789 13634044 -130152411 + AluJo SINE Alu 1 296 -16 216 343 9 19 chr12 13634934 13635039 -130151416 - L3 LINE CR1 -8 1569 1466 2669 36 3 0 chr12 13635830 13636138 -130150317 - AluY SINE Alu -2 309 1 567 0 0 0 chr12 13637030 13637093 -130149362 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 231 361 130 25 chr12 13637206 13637491 -130148964 + L2 LINE L2 2350 2664 -650 2112 117 3 0 chr12 13637990 13638280 -130148175 - AluSx SINE Alu -21 291 1 2092 130 3 7 chr12 13638283 13638590 -130147865 - AluSx SINE Alu -6 306 1 2258 100 0 16 chr12 13638715 13639026 -130147429 - AluY SINE Alu -5 306 1 690 221 55 76 chr12 13639051 13639236 -130147219 + MER31-int LTR ERV1 2470 2657 -2279 1548 156 30 86 chr12 13639236 13639537 -130146918 - AluJo SINE Alu -22 290 7 690 221 55 76 chr12 13639537 13639883 -130146572 + MER31-int LTR ERV1 2657 3025 -1911 2130 123 3 0 chr12 13640341 13640643 -130145812 + AluSx SINE Alu 1 303 -9 2239 40 4 0 chr12 13640784 13641056 -130145399 - L1PA5 LINE L1 -1 6153 5881 3617 185 55 62 chr12 13641090 13641220 -130145235 + MER31-int LTR ERV1 3171 3300 -1636 2108 138 3 3 chr12 13641220 13641532 -130144923 + AluJb SINE Alu 1 312 0 3617 185 55 62 chr12 13641532 13642435 -130144020 + MER31-int LTR ERV1 3300 4195 -741 933 264 46 65 chr12 13642495 13642911 -130143544 + MER92A LTR ERV1 1 408 -4 1869 131 17 13 chr12 13642925 13643223 -130143232 - AluSx SINE Alu -8 304 6 542 118 20 10 chr12 13643635 13643881 -130142574 + AluJb SINE Alu 1 298 -14 1880 132 11 0 chr12 13643885 13644172 -130142283 + AluSx SINE Alu 1 290 -22 1888 149 92 21 chr12 13644262 13644644 -130141811 + L1MB7 LINE L1 5776 6184 0 2373 53 3 13 chr12 13644655 13644959 -130141496 + AluY SINE Alu 1 301 -10 180 111 0 0 chr12 13644983 13645010 -130141445 + (A)n Simple_repeat Simple_repeat 1 27 0 1752 123 0 83 chr12 13645018 13645343 -130141112 + AluJb SINE Alu 1 298 -14 1475 171 79 14 chr12 13645479 13645759 -130140696 - AluJb SINE Alu -2 300 3 2024 111 0 3 chr12 13646351 13646640 -130139815 + AluSx SINE Alu 14 301 -11 23 0 0 0 chr12 13647058 13647081 -130139374 + AT_rich Low_complexity Low_complexity 1 23 0 2296 62 3 3 chr12 13647455 13647759 -130138696 + AluY SINE Alu 1 304 -7 254 266 292 13 chr12 13647977 13648131 -130138324 - MIR SINE MIR 0 262 66 2255 43 60 0 chr12 13648497 13648778 -130137677 + AluY SINE Alu 1 298 -13 525 178 10 10 chr12 13648958 13649059 -130137396 + MER103 DNA DNA 15 115 -51 182 288 186 0 chr12 13649075 13649134 -130137321 - MIR SINE MIR -109 99 30 2244 86 0 13 chr12 13649319 13649455 -130137000 + AluSx SINE Alu 1 137 -175 2061 138 0 0 chr12 13649455 13649767 -130136688 + AluSx SINE Alu 1 312 0 2244 86 0 13 chr12 13649767 13649932 -130136523 + AluSx SINE Alu 137 298 -14 291 333 139 0 chr12 13650082 13650190 -130136265 + L2 LINE L2 3150 3272 0 203 385 74 7 chr12 13650194 13650329 -130136126 + MIR3 SINE MIR 58 201 -7 2233 87 0 35 chr12 13650330 13650641 -130135814 + AluSp SINE Alu 1 300 -13 1884 69 91 4 chr12 13650652 13650926 -130135529 + AluY SINE Alu 1 298 -13 1481 177 34 0 chr12 13650938 13651203 -130135252 + AluJb SINE Alu 20 293 -19 1298 156 85 85 chr12 13651220 13651515 -130134940 + AluJo SINE Alu 1 295 -7 311 345 40 14 chr12 13651620 13651768 -130134687 - MIR SINE MIR -64 198 47 301 268 12 0 chr12 13653890 13653972 -130132483 + C-rich Low_complexity Low_complexity 1 83 0 21 0 0 0 chr12 13654244 13654265 -130132190 + GC_rich Low_complexity Low_complexity 1 21 0 428 277 36 32 chr12 13655461 13655658 -130130797 - MIR SINE MIR -51 211 20 2137 83 0 19 chr12 13655832 13656144 -130130311 + AluSg SINE Alu 1 306 -4 401 212 94 0 chr12 13656149 13656234 -130130221 + MER69 DNA AcHobo 47 139 -2387 353 91 0 0 chr12 13656269 13656313 -130130142 + MER69 DNA AcHobo 2482 2525 -1 2471 55 0 0 chr12 13656340 13656651 -130129804 + AluY SINE Alu 1 311 0 395 252 81 126 chr12 13656696 13656775 -130129680 + L1ME4a LINE L1 5793 5874 -247 2195 104 3 0 chr12 13656775 13657082 -130129373 - AluSp SINE Alu -5 308 1 395 252 81 126 chr12 13657082 13657311 -130129144 + L1ME4a LINE L1 5874 6087 -34 353 327 29 10 chr12 13657401 13657505 -130128950 - L2 LINE L2 -18 3254 3149 1931 156 0 0 chr12 13657551 13657858 -130128597 + AluJb SINE Alu 2 308 -4 903 161 0 0 chr12 13657913 13658086 -130128369 + AluSg/x SINE Alu 135 307 0 2078 128 0 0 chr12 13658632 13658937 -130127518 + AluSx SINE Alu 1 305 -7 2353 66 0 7 chr12 13658937 13659240 -130127215 + AluY SINE Alu 1 301 -10 2263 74 7 16 chr12 13659263 13659573 -130126882 + AluSq SINE Alu 1 307 -6 2232 78 3 3 chr12 13659776 13660072 -130126383 + AluSx SINE Alu 1 296 -16 268 300 146 80 chr12 13660165 13660528 -130125927 - L2 LINE L2 -1410 1904 1518 476 204 10 19 chr12 13660596 13660699 -130125756 + MER69 DNA AcHobo 47 148 -2378 254 185 49 37 chr12 13660691 13660772 -130125683 + MER69 DNA AcHobo 2444 2525 -1 * 275 296 71 53 chr12 13660818 13660987 -130125468 - L2 LINE L2 -1890 1424 1253 1888 97 3 121 chr12 13661057 13661396 -130125059 - AluSg SINE Alu -1 299 1 2137 90 27 0 chr12 13661409 13661710 -130124745 - AluY SINE Alu -2 309 1 777 138 0 90 chr12 13661722 13661867 -130124588 - AluSq/x SINE Alu -180 133 2 2247 99 3 0 chr12 13661983 13662295 -130124160 + AluSp SINE Alu 1 313 0 2120 122 0 3 chr12 13662553 13662864 -130123591 + AluSg SINE Alu 1 310 0 379 210 0 0 chr12 13662881 13662962 -130123493 + L1MD3 LINE L1 6446 6526 -1469 4776 226 55 52 chr12 13662983 13663277 -130123178 + L1M4 LINE L1 4 296 -6279 2558 135 36 7 chr12 13663277 13663691 -130122764 - MSTB LTR MaLR 0 426 1 4776 226 55 52 chr12 13663691 13664146 -130122309 + L1M4 LINE L1 296 748 -5827 2044 117 0 7 chr12 13664146 13664444 -130122011 + AluSc SINE Alu 1 296 -13 4776 226 55 52 chr12 13664444 13664896 -130121559 + L1M4 LINE L1 748 1198 -5377 2148 125 0 0 chr12 13664896 13665199 -130121256 + AluSx SINE Alu 1 303 -9 4776 226 55 52 chr12 13665199 13665590 -130120865 + L1M4 LINE L1 1198 1587 -4988 1946 130 0 27 chr12 13665590 13665890 -130120565 - AluSx SINE Alu -20 292 1 4776 226 55 52 chr12 13665890 13665935 -130120520 + L1M4 LINE L1 1587 2050 -4525 640 219 77 41 chr12 13665937 13666133 -130120322 + L1MC4 LINE L1 6523 6725 -1317 417 183 0 0 chr12 13666136 13666207 -130120248 - LTR16B LTR ERVL 0 464 394 1726 232 124 7 chr12 13666214 13666632 -130119823 + MLT1F LTR MaLR 11 477 -65 1265 121 25 107 chr12 13666634 13666703 -130119752 - Tigger2 DNA MER2_type 0 2718 2645 1950 106 0 56 chr12 13666703 13666872 -130119583 - AluSx SINE Alu -18 294 148 2097 112 0 0 chr12 13666872 13667168 -130119287 - AluSc SINE Alu -13 296 1 1950 106 0 56 chr12 13667168 13667300 -130119155 - AluSx SINE Alu -164 148 10 1265 121 25 107 chr12 13667300 13667511 -130118944 - Tigger2 DNA MER2_type -73 2645 2461 4802 139 5 4 chr12 13667573 13668321 -130118134 - Tigger2 DNA MER2_type -1969 749 1 326 121 17 17 chr12 13668324 13668382 -130118073 + MLT1F LTR MaLR 484 541 -1 1377 259 39 19 chr12 13668386 13668749 -130117706 - LTR16B LTR ERVL -94 370 1 1794 176 6 36 chr12 13668752 13668810 -130117645 + L1MC4 LINE L1 6727 6785 -1257 2207 100 0 3 chr12 13668810 13669110 -130117345 - AluSq SINE Alu -14 299 1 1794 176 6 36 chr12 13669110 13669408 -130117047 + L1MC4 LINE L1 6785 7072 -970 255 61 0 0 chr12 13669413 13669446 -130117009 + (CATA)n Simple_repeat Simple_repeat 2 34 0 2234 246 47 4 chr12 13669492 13670028 -130116427 + L1MC4 LINE L1 7345 7903 -139 489 191 16 40 chr12 13670941 13671067 -130115388 + MER20 DNA MER1_type 39 161 -58 1983 79 0 8 chr12 13671439 13671704 -130114751 - AluSc SINE Alu -36 273 11 702 235 5 80 chr12 13671710 13671910 -130114545 + LTR39 LTR ERV1 599 783 0 2497 56 0 0 chr12 13672255 13672557 -130113898 + AluY SINE Alu 1 302 -9 274 324 78 0 chr12 13672621 13672723 -130113732 - MIR SINE MIR 0 262 153 315 226 12 36 chr12 13673028 13673112 -130113343 + L1MC3 LINE L1 6571 6652 -1133 2176 93 0 3 chr12 13673118 13673408 -130113047 - AluSc SINE Alu -20 289 1 1718 159 9 22 chr12 13673419 13673734 -130112721 - AluJo SINE Alu -1 311 1 1496 147 52 18 chr12 13674075 13674361 -130112094 + AluJb SINE Alu 1 296 -16 405 0 0 0 chr12 13674362 13674407 -130112048 + (CA)n Simple_repeat Simple_repeat 2 46 0 2410 68 0 7 chr12 13674442 13674752 -130111703 - AluY SINE Alu -3 308 1 481 257 192 24 chr12 13674756 13675196 -130111259 - L1ME4a LINE L1 -3 6118 5600 183 80 0 0 chr12 13675248 13675273 -130111182 + (T)n Simple_repeat Simple_repeat 1 25 0 1577 140 53 4 chr12 13675284 13675548 -130110907 - AluSx SINE Alu -4 308 32 608 196 7 20 chr12 13675551 13675704 -130110751 - Charlie1 DNA MER1_type -28 2733 2583 1065 93 0 0 chr12 13676031 13676170 -130110285 + AluSg1 SINE Alu 1 139 -170 2028 128 0 0 chr12 13676170 13676466 -130109989 + AluSx SINE Alu 1 296 -16 237 239 17 40 chr12 13676484 13676601 -130109854 - MIR SINE MIR -56 206 94 373 202 32 32 chr12 13676855 13676949 -130109506 + MER89 LTR ERV1 9 102 -457 1208 181 41 49 chr12 13676950 13677023 -130109432 + MER89 LTR ERV1 272 344 -215 2014 113 31 0 chr12 13677023 13677191 -130109264 - AluSg SINE Alu -8 302 120 180 0 0 0 chr12 13677191 13677211 -130109244 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 2014 113 31 0 chr12 13677211 13677335 -130109120 - AluSg SINE Alu -190 120 1 1208 181 41 49 chr12 13677335 13677527 -130108928 + MER89 LTR ERV1 344 535 -24 266 267 56 72 chr12 13677546 13677726 -130108729 - MIR SINE MIR 0 262 86 1849 147 3 25 chr12 13678594 13678913 -130107542 + AluJo SINE Alu 1 312 0 529 165 0 0 chr12 13679077 13679162 -130107293 - FLAM SINE Alu -19 124 40 3167 77 18 40 chr12 13679252 13679640 -130106815 + MLT2A1 LTR ERVL 1 379 -65 381 93 0 0 chr12 13679640 13679694 -130106761 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 3167 77 18 40 chr12 13679694 13679759 -130106696 + MLT2A1 LTR ERVL 379 444 0 396 151 41 14 chr12 13680562 13680635 -130105820 + AluJb SINE Alu 197 271 -31 322 123 46 0 chr12 13680652 13680717 -130105738 + G-rich Low_complexity Low_complexity 4 71 0 * 852 102 4 49 chr12 13680708 13680993 -130105462 + (GGGGA)n Simple_repeat Simple_repeat 1 271 0 432 299 122 66 chr12 13681353 13681731 -130104724 - L2 LINE L2 -4 3268 2870 192 336 8 55 chr12 13682012 13682140 -130104315 - L2 LINE L2 -791 2523 2402 2141 97 3 7 chr12 13682330 13682629 -130103826 + AluSx SINE Alu 1 298 -14 1871 123 10 10 chr12 13682643 13682936 -130103519 + AluSq SINE Alu 14 306 -7 1769 157 11 0 chr12 13682945 13683251 -130103204 + AluJo SINE Alu 1 309 0 496 185 141 30 chr12 13683366 13683501 -130102954 + MIR SINE MIR 85 234 -28 486 145 40 0 chr12 13683509 13683585 -130102870 - AluY SINE Alu -22 289 211 1237 60 0 0 chr12 13683586 13683736 -130102719 - AluSq/x SINE Alu -162 150 1 606 280 125 57 chr12 13683784 13684152 -130102303 - MLT1L LTR MaLR -32 583 191 1043 160 0 11 chr12 13684352 13684533 -130101922 - AluJb SINE Alu 0 312 134 2041 106 3 0 chr12 13684544 13684852 -130101603 - AluSx SINE Alu 0 309 1 218 290 14 13 chr12 13685594 13685678 -130100777 + GA-rich Low_complexity Low_complexity 1 84 0 209 294 15 59 chr12 13685814 13685882 -130100573 - MIR3 SINE MIR -54 154 90 2198 77 3 0 chr12 13686013 13686298 -130100157 - AluY SINE Alu -25 286 1 2270 58 0 0 chr12 13686449 13686727 -130099728 + AluY SINE Alu 1 278 -33 378 0 0 0 chr12 13686727 13686769 -130099686 + (CA)n Simple_repeat Simple_repeat 1 42 0 2142 107 0 7 chr12 13687346 13687646 -130098809 + AluSg SINE Alu 1 298 -12 852 147 0 0 chr12 13688802 13688931 -130097524 + FLAM_C SINE Alu 1 129 -4 762 179 37 79 chr12 13690171 13690257 -130096198 + MER58 DNA MER1_type 1 89 -252 2032 128 0 13 chr12 13690257 13690563 -130095892 - AluSx SINE Alu -10 302 1 762 179 37 79 chr12 13690563 13690666 -130095789 + MER58 DNA MER1_type 89 182 -159 273 203 68 0 chr12 13690668 13690727 -130095728 + MER58 DNA MER1_type 2358 2420 0 23 55 0 18 chr12 13690773 13690802 -130095653 + AT_rich Low_complexity Low_complexity 1 30 -24 1867 150 3 3 chr12 13690802 13691089 -130095366 - AluJb SINE Alu -25 287 1 23 55 0 18 chr12 13691089 13691114 -130095341 + AT_rich Low_complexity Low_complexity 30 54 0 1615 138 0 90 chr12 13691709 13692042 -130094413 + AluJo SINE Alu 1 303 -9 607 317 92 10 chr12 13692768 13693071 -130093384 + L2 LINE L2 2372 2699 -615 1856 96 4 18 chr12 13693082 13693362 -130093093 - AluSg SINE Alu -11 299 24 894 155 0 0 chr12 13693502 13693650 -130092805 + AluSp/q SINE Alu 157 304 -9 675 125 0 2 chr12 13693687 13693950 -130092505 + AluSx SINE Alu 1 305 -4 649 277 193 51 chr12 13693951 13694309 -130092146 + L2 LINE L2 2782 3221 -92 1693 165 21 3 chr12 13694309 13694600 -130091855 - AluJb SINE Alu -8 304 9 649 277 193 51 chr12 13694600 13694708 -130091747 + L2 LINE L2 3221 3312 -1 1966 110 3 23 chr12 13694775 13695075 -130091380 + AluSx SINE Alu 1 294 -18 2156 76 0 14 chr12 13695077 13695366 -130091089 + AluY SINE Alu 16 300 -11 326 277 183 15 chr12 13695574 13695711 -130090744 + L2 LINE L2 3150 3309 -4 320 98 0 0 chr12 13695752 13695793 -130090662 - 5S rRNA rRNA -79 42 2 336 302 62 8 chr12 13695811 13695940 -130090515 - MARNA DNA Mariner -17 569 434 336 24 0 0 chr12 13696664 13696705 -130089750 + (CA)n Simple_repeat Simple_repeat 1 41 0 1621 181 0 22 chr12 13697039 13697354 -130089101 - AluJo SINE Alu -4 308 1 1854 155 3 0 chr12 13697601 13697898 -130088557 - AluJo SINE Alu -14 298 1 1311 265 87 49 chr12 13698773 13699279 -130087176 - MER21B LTR ERV1 -113 750 226 503 172 0 54 chr12 13699340 13699426 -130087029 - MER21B LTR ERV1 -766 97 15 1684 135 7 40 chr12 13699426 13699492 -130086963 - AluJo SINE Alu -26 286 219 1719 156 0 26 chr12 13699492 13699800 -130086655 + AluSx SINE Alu 1 300 -12 1684 135 7 40 chr12 13699800 13700029 -130086426 - AluJo SINE Alu -93 219 1 229 296 161 0 chr12 13700053 13700134 -130086321 + L2 LINE L2 3208 3301 -12 206 264 44 55 chr12 13700244 13700335 -130086120 + MIR3 SINE MIR 96 185 -23 255 31 0 0 chr12 13700363 13700395 -130086060 + (T)n Simple_repeat Simple_repeat 1 32 0 2043 124 0 13 chr12 13701616 13701922 -130084533 + AluJb SINE Alu 1 302 -10 2451 87 37 39 chr12 13702026 13702262 -130084193 + MLT2A1 LTR ERVL 1 237 -207 2115 93 14 3 chr12 13702262 13702553 -130083902 - AluSc SINE Alu -15 294 1 2451 87 37 39 chr12 13702553 13702671 -130083784 + MLT2A1 LTR ERVL 237 354 -90 2222 96 0 13 chr12 13702828 13703131 -130083324 + AluSq SINE Alu 1 299 -14 211 154 26 0 chr12 13703132 13703171 -130083284 - MIR SINE MIR -107 155 116 570 237 36 0 chr12 13703527 13703666 -130082789 - Charlie4a DNA MER1_type -9 499 356 4844 160 44 43 chr12 13703681 13703786 -130082669 + L1MC2 LINE L1 4461 4564 -1780 2246 65 7 0 chr12 13703786 13704076 -130082379 + AluY SINE Alu 1 292 -19 4844 160 44 43 chr12 13704076 13704809 -130081646 + L1MC2 LINE L1 4564 5295 -1049 3357 110 60 8 chr12 13704809 13705310 -130081145 - MER1A DNA MER1_type 0 527 1 4844 160 44 43 chr12 13705310 13705573 -130080882 + L1MC2 LINE L1 5295 5556 -788 2245 103 0 13 chr12 13705573 13705883 -130080572 + AluSx SINE Alu 3 308 -4 4844 160 44 43 chr12 13705883 13706494 -130079961 + L1MC2 LINE L1 5556 6155 -189 304 223 204 0 chr12 13706608 13706711 -130079744 - MIR SINE MIR -3 259 136 1053 177 181 7 chr12 13706725 13707002 -130079453 - Charlie4a DNA MER1_type -163 345 21 408 154 0 164 chr12 13708658 13708768 -130077687 + L2 LINE L2 3181 3272 0 2067 111 0 13 chr12 13709385 13709701 -130076754 - AluSx SINE Alu 0 312 1 29 79 0 11 chr12 13709765 13709823 -130076632 + AT_rich Low_complexity Low_complexity 1 59 -29 1685 167 10 35 chr12 13709823 13709999 -130076456 - AluJo SINE Alu -9 303 137 2246 103 0 0 chr12 13709999 13710301 -130076154 - AluSx SINE Alu -8 304 3 1685 167 10 35 chr12 13710301 13710435 -130076020 - AluJo SINE Alu -175 137 1 29 79 0 11 chr12 13710435 13710465 -130075990 + AT_rich Low_complexity Low_complexity 59 88 0 2225 78 0 0 chr12 13710608 13710933 -130075522 + AluY SINE Alu 1 325 0 1703 147 7 25 chr12 13711058 13711343 -130075112 + AluJo SINE Alu 1 280 -32 229 340 81 43 chr12 13711571 13711756 -130074699 - L2 LINE L2 -480 2834 2643 322 262 0 0 chr12 13711983 13712044 -130074411 + MIR SINE MIR 56 116 -146 347 312 40 32 chr12 13712304 13712429 -130074026 + L2 LINE L2 3147 3272 0 1792 134 46 65 chr12 13712457 13712741 -130073714 - L1MB8 LINE L1 -7 6171 5896 2299 63 0 10 chr12 13712741 13713043 -130073412 - AluY SINE Alu -12 299 1 1792 134 46 65 chr12 13713043 13713192 -130073263 - L1MB8 LINE L1 -282 5896 5746 223 336 78 9 chr12 13713420 13713536 -130072919 + L2 LINE L2 2946 3069 -203 2498 49 0 3 chr12 13713808 13714112 -130072343 - AluY SINE Alu -8 303 1 223 230 32 75 chr12 13714535 13714670 -130071785 + MIR SINE MIR 26 198 -64 21 0 0 0 chr12 13714923 13714944 -130071511 + GC_rich Low_complexity Low_complexity 1 21 0 556 151 25 67 chr12 13717069 13717159 -130069296 + FLAM_A SINE Alu 22 107 -204 2218 91 14 0 chr12 13717159 13717456 -130068999 - AluSx SINE Alu -11 301 1 556 151 25 67 chr12 13717456 13717484 -130068971 + FLAM_A SINE Alu 107 135 -176 222 266 64 37 chr12 13717671 13717780 -130068675 + MIR SINE MIR 77 188 -74 2098 119 3 0 chr12 13717876 13718169 -130068286 + AluSg SINE Alu 1 294 -16 1398 167 44 63 chr12 13718187 13718504 -130067951 - AluJb SINE Alu -1 311 1 2130 113 0 0 chr12 13718514 13718815 -130067640 - AluSx SINE Alu -11 301 1 907 286 119 3 chr12 13719203 13719497 -130066958 + L2 LINE L2 2967 3294 -19 1004 83 28 0 chr12 13720211 13720355 -130066100 - L1PA5 LINE L1 0 6154 6007 2024 96 16 35 chr12 13720431 13720745 -130065710 - AluSx SINE Alu -4 308 1 1748 175 0 3 chr12 13720812 13721109 -130065346 + AluJb SINE Alu 5 300 -12 941 113 0 0 chr12 13721112 13721245 -130065210 + AluSq/x SINE Alu 1 133 -179 2126 36 0 0 chr12 13721249 13721501 -130064954 + AluY SINE Alu 1 252 -59 1660 225 74 50 chr12 13722839 13723342 -130063113 - LTR33 LTR ERVL -6 515 1 4093 78 11 28 chr12 13723444 13723829 -130062626 - MER41A LTR ERV1 0 554 180 2036 52 3 72 chr12 13723829 13724155 -130062300 - AluSp SINE Alu 0 305 1 4093 78 11 28 chr12 13724155 13724332 -130062123 - MER41A LTR ERV1 -374 180 1 393 261 79 20 chr12 13724332 13724534 -130061921 + L1ME LINE L1 5626 5839 -327 2414 78 0 0 chr12 13724691 13724999 -130061456 + AluSc SINE Alu 1 308 -1 2018 104 0 7 chr12 13725012 13725292 -130061163 + AluSx SINE Alu 20 297 -15 2932 177 18 25 chr12 13725384 13725436 -130061019 - MLT2B3 LTR ERVL 0 554 503 570 98 0 0 chr12 13725436 13725518 -130060937 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 2932 177 18 25 chr12 13725518 13726023 -130060432 - MLT2B3 LTR ERVL -51 503 1 390 329 54 14 chr12 13726067 13726289 -130060166 - L2 LINE L2 -157 3156 2926 1585 174 11 7 chr12 13726300 13726581 -130059874 + AluJo SINE Alu 13 294 -18 352 252 22 0 chr12 13726582 13726721 -130059734 + (TA)n Simple_repeat Simple_repeat 1 142 0 225 136 45 0 chr12 13726758 13726824 -130059631 + (TA)n Simple_repeat Simple_repeat 1 69 0 2094 127 0 0 chr12 13726838 13727138 -130059317 - AluSx SINE Alu -11 301 2 1599 184 32 18 chr12 13727151 13727494 -130058961 - L1MB5 LINE L1 -44 6130 5783 3805 113 18 55 chr12 13727516 13727676 -130058779 - L1MB3 LINE L1 -2 6181 6017 314 45 23 0 chr12 13727676 13727720 -130058735 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2315 63 3 0 chr12 13727720 13728006 -130058449 - AluSp SINE Alu -26 287 1 3805 113 18 55 chr12 13728006 13728381 -130058074 - L1MB3 LINE L1 -165 6018 5673 1599 170 3 29 chr12 13728381 13728687 -130057768 - AluJb SINE Alu -14 298 1 3805 113 18 55 chr12 13728687 13728823 -130057632 - L1MB3 LINE L1 -510 5673 5533 1953 113 7 7 chr12 13728856 13729149 -130057306 - AluSx SINE Alu -19 293 1 376 45 79 135 chr12 13729296 13729385 -130057070 + MLT2B1 LTR ERVL 1 84 -436 1642 232 50 38 chr12 13729711 13730134 -130056321 + MLT2B1 LTR ERVL 85 512 -8 1786 171 0 29 chr12 13730138 13730454 -130056001 + AluJb SINE Alu 1 307 -5 3189 150 51 70 chr12 13730618 13730655 -130055800 + L1MB8 LINE L1 5457 5493 -685 2173 105 0 0 chr12 13730655 13730951 -130055504 + AluSg SINE Alu 1 296 -14 3189 150 51 70 chr12 13730951 13731082 -130055373 + L1MB8 LINE L1 5493 5625 -553 2054 115 7 0 chr12 13731082 13731370 -130055085 + AluSx SINE Alu 1 290 -22 416 35 17 0 chr12 13731371 13731429 -130055026 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 3189 150 51 70 chr12 13731429 13731922 -130054533 + L1MB8 LINE L1 5625 6110 -68 2073 116 10 3 chr12 13731922 13732224 -130054231 - AluSp SINE Alu -9 304 1 3189 150 51 70 chr12 13732224 13732245 -130054210 + L1MB8 LINE L1 6110 6130 -48 389 130 0 0 chr12 13732388 13732442 -130054013 - AluJ/FRAM SINE Alu -28 274 221 1157 164 14 19 chr12 13732442 13732655 -130053800 + AluJo SINE Alu 1 212 -100 785 154 95 24 chr12 13733270 13733406 -130053049 + MER20 DNA MER1_type 39 164 -55 1729 149 17 10 chr12 13733406 13733701 -130052754 + AluJo SINE Alu 1 297 -15 1498 155 35 48 chr12 13733701 13734017 -130052438 + AluJb SINE Alu 1 312 0 785 154 95 24 chr12 13734017 13734048 -130052407 + MER20 DNA MER1_type 163 219 0 274 228 173 55 chr12 13734285 13734412 -130052043 - L2 LINE L2 -4 3309 3168 1939 129 0 17 chr12 13734609 13734933 -130051522 - AluSx SINE Alu 0 312 1 517 222 198 18 chr12 13734969 13735136 -130051319 - MIR SINE MIR -64 198 2 183 333 56 0 chr12 13735163 13735235 -130051220 - MIR SINE MIR -184 78 3 1846 161 10 3 chr12 13735489 13735794 -130050661 + AluJo SINE Alu 1 307 -5 2217 81 24 0 chr12 13735877 13736172 -130050283 + AluSx SINE Alu 1 302 -10 1864 125 11 4 chr12 13736309 13736634 -130049821 - AluSx SINE Alu 0 327 1 381 229 73 10 chr12 13736882 13736978 -130049477 - MIR SINE MIR -44 218 117 211 196 304 27 chr12 13736950 13737062 -130049393 - MIR3 SINE MIR -63 145 3 * 1861 132 14 0 chr12 13737302 13737591 -130048864 + AluSx SINE Alu 1 293 -19 492 194 112 0 chr12 13737681 13737779 -130048676 + MER81 DNA DNA 5 113 -1 2126 68 0 0 chr12 13737955 13738221 -130048234 + AluY SINE Alu 1 266 -45 680 107 39 0 chr12 13738225 13738328 -130048127 - U6 snRNA snRNA 0 107 1 933 227 41 61 chr12 13738360 13738511 -130047944 + MLT1A1 LTR MaLR 10 162 -203 2107 116 7 0 chr12 13738511 13738814 -130047641 + AluSc SINE Alu 5 309 0 933 227 41 61 chr12 13738814 13739079 -130047376 + MLT1A1 LTR MaLR 162 353 -12 1024 172 40 0 chr12 13739694 13739868 -130046587 - MER5A DNA MER1_type -6 183 3 2342 79 0 0 chr12 13740109 13740413 -130046042 + AluSx SINE Alu 1 304 -8 2036 120 3 0 chr12 13740522 13740814 -130045641 + AluSx SINE Alu 1 293 -19 665 296 56 9 chr12 13740858 13741091 -130045364 + MLT1L LTR MaLR 344 587 -28 223 190 51 101 chr12 13741304 13741383 -130045072 + MIR SINE MIR 124 198 -64 866 92 0 0 chr12 13741466 13741585 -130044870 + AluSg/x SINE Alu 180 298 -14 1681 97 26 102 chr12 13741594 13741936 -130044519 + AluYb8 SINE Alu 1 316 -2 525 271 137 75 chr12 13742294 13742747 -130043708 + MLT1J LTR MaLR 1 481 -30 3440 130 12 2 chr12 13742799 13743306 -130043149 - MER41E LTR ERV1 0 512 1 253 283 25 68 chr12 13743381 13743546 -130042909 - MLT1K LTR MaLR -437 151 14 2139 147 0 0 chr12 13743553 13743860 -130042595 + AluSx SINE Alu 1 307 -5 908 223 79 0 chr12 13743880 13744082 -130042373 - MER20 DNA MER1_type -1 218 1 2001 138 44 33 chr12 13744425 13744495 -130041960 - MER47A DNA MER2_type -1957 366 298 2358 107 0 3 chr12 13744495 13744804 -130041651 + AluSc SINE Alu 1 308 -1 2001 138 44 33 chr12 13744804 13745095 -130041360 - MER47A DNA MER2_type -2025 298 1 2462 68 14 0 chr12 13745137 13745432 -130041023 - AluSp SINE Alu -14 299 1 239 276 0 0 chr12 13745617 13745675 -130040780 + L2 LINE L2 3215 3272 0 1748 196 7 0 chr12 13746272 13746578 -130039877 + AluJo SINE Alu 1 308 -4 2505 65 0 0 chr12 13746797 13747091 -130039364 - AluY SINE Alu -17 294 1 280 202 131 40 chr12 13747288 13747387 -130039068 + MER5B DNA MER1_type 1 108 -70 2314 104 0 3 chr12 13747694 13747992 -130038463 - AluSq SINE Alu -16 297 1 2070 134 7 3 chr12 13748046 13748336 -130038119 - AluSx SINE Alu -19 293 3 2437 92 0 0 chr12 13748338 13748643 -130037812 - AluSx SINE Alu -7 305 1 2957 153 34 77 chr12 13749005 13749167 -130037288 + LTR39 LTR ERV1 3 170 -613 2603 44 0 0 chr12 13749167 13749460 -130036995 + AluY SINE Alu 5 297 -14 2957 153 34 77 chr12 13749460 13749567 -130036888 + LTR39 LTR ERV1 170 280 -503 2270 83 0 0 chr12 13749567 13749870 -130036585 - AluSc SINE Alu 0 306 4 2957 153 34 77 chr12 13749870 13750210 -130036245 + LTR39 LTR ERV1 280 588 -195 2206 104 3 3 chr12 13750210 13750508 -130035947 - AluY SINE Alu -13 298 1 2957 153 34 77 chr12 13750508 13750535 -130035920 + LTR39 LTR ERV1 588 615 -168 2145 138 0 0 chr12 13750543 13750834 -130035621 + AluSx SINE Alu 1 291 -21 257 0 30 0 chr12 13750834 13750867 -130035588 + (TA)n Simple_repeat Simple_repeat 2 35 0 * 354 23 0 0 chr12 13750866 13750909 -130035546 + (TG)n Simple_repeat Simple_repeat 2 44 0 26 0 0 0 chr12 13750909 13750935 -130035520 + AT_rich Low_complexity Low_complexity 1 26 0 739 114 29 0 chr12 13750935 13751040 -130035415 - FLAM_C SINE Alu -25 118 11 617 220 16 89 chr12 13751046 13751237 -130035218 + LTR39 LTR ERV1 599 775 -8 203 349 15 0 chr12 13751560 13751626 -130034829 - L2 LINE L2 -39 3274 3208 1645 150 7 25 chr12 13751650 13751924 -130034531 + AluJo SINE Alu 1 269 -43 1181 211 0 18 chr12 13751969 13752187 -130034268 - AluSq SINE Alu -99 214 1 342 254 0 0 chr12 13752187 13752258 -130034197 + AluJ/FRAM SINE Alu 221 291 -11 1197 188 44 51 chr12 13752285 13752578 -130033877 + AluJb SINE Alu 22 312 0 231 208 0 0 chr12 13752846 13752894 -130033561 - L2 LINE L2 -4 3309 3262 1977 94 8 4 chr12 13753006 13753260 -130033195 - AluSc SINE Alu -54 255 1 1222 79 73 0 chr12 13753260 13753424 -130033031 + MLT2A1 LTR ERVL 225 400 -44 716 206 37 0 chr12 13753652 13753788 -130032667 + MER3 DNA MER1_type 6 146 -63 198 0 0 0 chr12 13753790 13753812 -130032643 + (T)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr12 13753813 13753834 -130032621 + AT_rich Low_complexity Low_complexity 1 21 0 731 146 8 0 chr12 13754987 13755110 -130031345 + FRAM SINE Alu 52 175 -1 2276 92 0 3 chr12 13755121 13755405 -130031050 + AluSc SINE Alu 1 283 -26 743 108 20 0 chr12 13756169 13756271 -130030184 + Tigger7 DNA MER2_type 2369 2472 -19 2539 68 0 0 chr12 13756287 13756596 -130029859 - AluY SINE Alu -2 309 1 353 91 0 0 chr12 13756623 13756667 -130029788 - MER69 DNA AcHobo -1 2525 2482 398 212 94 0 chr12 13756702 13756787 -130029668 - MER69 DNA AcHobo -1087 139 47 1344 204 0 22 chr12 13756792 13757105 -130029350 - AluSg SINE Alu -4 306 1 182 266 64 37 chr12 13757634 13757743 -130028712 - MIR SINE MIR -74 188 77 961 239 20 3 chr12 13757961 13758254 -130028201 + AluSq SINE Alu 5 302 -1 2082 139 0 0 chr12 13758651 13758938 -130027517 - AluSx SINE Alu -25 287 1 724 184 21 0 chr12 13758945 13759086 -130027369 - L1MEc LINE L1 -5330 1212 1069 647 196 29 23 chr12 13759576 13759731 -130026724 - L1MC4 LINE L1 -95 7713 7652 927 155 6 18 chr12 13760195 13760363 -130026092 + FRAM SINE Alu 1 40 0 395 210 94 105 chr12 13761243 13761424 -130025031 + MER20B DNA MER1_type 1 179 -604 561 236 118 0 chr12 13761487 13761631 -130024824 - MER58B DNA MER1_type 0 341 181 877 160 0 0 chr12 13761631 13761784 -130024671 - AluSg/x SINE Alu 0 309 157 358 294 70 40 chr12 13761787 13761901 -130024554 - L1MEc LINE L1 -6022 803 679 1775 182 11 32 chr12 13761901 13762274 -130024181 + MLT1A1 LTR MaLR 1 365 0 358 294 70 40 chr12 13762274 13762360 -130024095 - L1MEc LINE L1 -6146 679 597 683 135 0 18 chr12 13763061 13763172 -130023283 + AluSp/q SINE Alu 194 302 -11 692 275 73 8 chr12 13763183 13763539 -130022916 + L1MEc LINE L1 953 1331 -5065 1226 229 46 39 chr12 13763568 13763957 -130022498 + L1MC4 LINE L1 7345 7736 -306 506 161 191 89 chr12 13764393 13764561 -130021894 + MER21B LTR ERV1 677 861 -2 708 171 31 0 chr12 13764568 13764697 -130021758 - L1MD3 LINE L1 -959 7036 6904 230 181 42 42 chr12 13764701 13764773 -130021682 - L1MEc LINE L1 -6233 592 521 228 299 94 8 chr12 13764915 13765032 -130021423 - L2 LINE L2 0 3272 3146 349 329 7 20 chr12 13765237 13765383 -130021072 + CT-rich Low_complexity Low_complexity 1 144 0 328 264 28 44 chr12 13765405 13765587 -130020868 + CT-rich Low_complexity Low_complexity 2 180 0 276 313 15 0 chr12 13765588 13765655 -130020800 + polypyrimidine Low_complexity Low_complexity 1 68 0 284 296 11 28 chr12 13765671 13765850 -130020605 + C-rich Low_complexity Low_complexity 5 180 0 1209 177 11 57 chr12 13766175 13766457 -130019998 - L1MC3 LINE L1 -1384 6401 6133 1556 159 0 90 chr12 13767773 13768106 -130018349 - AluJo SINE Alu -9 303 1 1377 138 0 5 chr12 13769085 13769281 -130017174 - AluSx SINE Alu -117 195 1 1369 102 16 77 chr12 13770409 13770446 -130016009 - Tigger2a DNA MER2_type -2477 231 193 2200 120 0 0 chr12 13770446 13770737 -130015718 + AluSx SINE Alu 1 291 -21 1369 102 16 77 chr12 13770737 13770945 -130015510 - Tigger2a DNA MER2_type -2515 193 1 2006 153 0 0 chr12 13771037 13771331 -130015124 + AluSx SINE Alu 1 294 -18 1508 134 4 45 chr12 13771585 13771832 -130014623 - AluJb SINE Alu -75 237 1 315 270 11 11 chr12 13772110 13772199 -130014256 - MIR SINE MIR -107 155 67 1646 185 19 26 chr12 13774786 13775099 -130011356 - AluJo SINE Alu -1 311 1 1564 244 94 42 chr12 13775249 13776065 -130010390 - L1MEc LINE L1 -3444 2771 1939 2224 128 0 0 chr12 13776065 13776371 -130010084 - AluSx SINE Alu -6 306 1 1564 244 94 42 chr12 13776371 13776714 -130009741 - L1MEc LINE L1 -4276 1939 1615 1942 222 119 46 chr12 13776718 13777082 -130009373 - L1MC4 LINE L1 -733 7309 6973 2423 68 0 3 chr12 13777082 13777375 -130009080 - AluY SINE Alu -19 292 1 1942 222 119 46 chr12 13777375 13777640 -130008815 - L1MC4 LINE L1 -1069 6973 6626 1868 139 4 7 chr12 13777640 13777920 -130008535 - AluJb SINE Alu -33 279 1 1942 222 119 46 chr12 13777920 13777961 -130008494 - L1MC4 LINE L1 -1416 6626 6589 733 293 71 3 chr12 13777972 13778351 -130008104 - L1MEc LINE L1 -5039 1357 953 2017 117 0 7 chr12 13778362 13778644 -130007811 - AluSq SINE Alu -11 302 23 952 184 0 6 chr12 13778673 13778836 -130007619 - AluJb SINE Alu -14 298 137 1294 280 96 28 chr12 13778836 13779312 -130007143 - L1MEc LINE L1 -5627 769 238 1817 177 11 32 chr12 13779312 13779685 -130006770 + MLT1A1 LTR MaLR 1 365 0 1294 280 96 28 chr12 13779685 13779843 -130006612 - L1MEc LINE L1 -6158 238 92 418 322 41 62 chr12 13779985 13780277 -130006178 - L2 LINE L2 0 3272 2987 2673 45 0 13 chr12 13780308 13780621 -130005834 - AluY SINE Alu -2 309 1 1595 166 40 25 chr12 13780681 13780982 -130005473 + AluJb SINE Alu 1 305 0 2059 122 17 0 chr12 13781006 13781300 -130005155 + AluSx SINE Alu 1 299 -13 2121 126 16 3 chr12 13781333 13781642 -130004813 - AluSq SINE Alu 0 313 1 1630 188 18 0 chr12 13781671 13781948 -130004507 + AluJo SINE Alu 1 282 -30 2103 123 26 0 chr12 13782130 13782432 -130004023 - AluSg SINE Alu 0 310 1 2553 61 0 0 chr12 13782565 13782862 -130003593 - AluY SINE Alu -14 297 1 2172 123 3 7 chr12 13783498 13783808 -130002647 - AluSx SINE Alu -3 309 1 250 324 0 0 chr12 13783820 13783891 -130002564 + L2 LINE L2 3184 3254 -18 2297 93 0 0 chr12 13784419 13784709 -130001746 + AluSx SINE Alu 1 290 -22 1148 221 58 7 chr12 13784849 13785126 -130001329 + L1MD3 LINE L1 7444 7874 -58 1558 157 4 20 chr12 13785126 13785381 -130001074 - AluJb SINE Alu -57 255 5 1148 221 58 7 chr12 13785381 13785415 -130001040 + L1MD3 LINE L1 7874 7905 -27 2018 132 20 7 chr12 13785436 13785739 -130000716 - AluSx SINE Alu 0 312 6 3700 136 116 34 chr12 13785982 13786688 -129999767 - Tigger1 DNA MER2_type -1653 765 2 1451 182 194 30 chr12 13786761 13787341 -129999114 - L1ME1 LINE L1 -154 6012 5528 1609 95 54 0 chr12 13787341 13787562 -129998893 - AluSg/x SINE Alu -12 300 68 1451 182 194 30 chr12 13787562 13787884 -129998571 - L1ME1 LINE L1 -638 5528 4795 582 267 6 0 chr12 13787887 13788052 -129998403 - L1M4 LINE L1 -1014 5943 5778 1876 259 75 36 chr12 13788053 13788410 -129998045 - L1M4c LINE L1 -3441 3516 3175 2522 161 29 2 chr12 13788410 13788825 -129997630 - MSTB LTR MaLR 0 426 1 1876 259 75 36 chr12 13788825 13788864 -129997591 - L1M4c LINE L1 -3782 3175 3139 2141 115 17 10 chr12 13788864 13789160 -129997295 - AluSx SINE Alu -12 300 3 1876 259 75 36 chr12 13789160 13790452 -129996003 - L1M4c LINE L1 -3818 3139 1605 870 146 8 0 chr12 13790481 13790611 -129995844 - FLAM_C SINE Alu -12 131 1 958 241 86 31 chr12 13790629 13791015 -129995440 - L1M4c LINE L1 -5244 1615 1209 474 187 149 15 chr12 13791041 13791175 -129995280 - MLT1F1 LTR MaLR -52 515 364 191 177 51 101 chr12 13791501 13791580 -129994875 + L2 LINE L2 2984 3058 -255 252 254 40 98 chr12 13791776 13791841 -129994614 - L1M4c LINE L1 -6621 238 171 2211 125 0 0 chr12 13791841 13792137 -129994318 - AluSg SINE Alu -14 296 1 252 254 40 98 chr12 13792137 13792295 -129994160 - L1M4c LINE L1 -6688 171 28 2140 135 0 0 chr12 13792334 13792630 -129993825 - AluSx SINE Alu -16 296 1 304 272 68 30 chr12 13792659 13792783 -129993672 - L1MEc LINE L1 -4054 2342 2224 1803 130 41 54 chr12 13792783 13793099 -129993356 - AluSx SINE Alu 0 312 1 304 272 68 30 chr12 13793099 13793209 -129993246 - L1MEc LINE L1 -4172 2224 2099 1264 222 4 19 chr12 13793239 13793496 -129992959 - AluJo SINE Alu -58 254 2 542 193 117 0 chr12 13793497 13793649 -129992806 - L1ME1 LINE L1 -311 5855 5690 796 277 131 9 chr12 13793867 13794282 -129992173 - L3 LINE CR1 -444 1133 617 2345 99 0 0 chr12 13795465 13795767 -129990688 - AluSq SINE Alu -11 302 1 2056 137 0 0 chr12 13795981 13796273 -129990182 - AluSx SINE Alu -20 292 1 497 205 116 0 chr12 13796493 13796605 -129989850 - L2 LINE L2 -1 3312 3188 1383 169 51 54 chr12 13796834 13797130 -129989325 + AluJo SINE Alu 1 295 -17 513 153 0 0 chr12 13797163 13797235 -129989220 - AluS SINE Alu -239 73 2 495 244 24 71 chr12 13797619 13797724 -129988731 + L3 LINE CR1 657 753 -824 2207 103 0 7 chr12 13797724 13798016 -129988439 - AluSx SINE Alu -21 291 2 495 244 24 71 chr12 13798016 13798078 -129988377 + L3 LINE CR1 753 816 -761 2010 129 0 47 chr12 13798079 13798397 -129988058 + AluSx SINE Alu 1 303 -9 575 278 75 0 chr12 13798526 13798699 -129987756 - MIR SINE MIR -75 187 2 242 294 78 29 chr12 13798709 13798811 -129987644 - L3 LINE CR1 -56 1521 1415 * 538 321 25 21 chr12 13798808 13799048 -129987407 + MIR SINE MIR 8 248 -14 625 285 81 62 chr12 13799068 13799277 -129987178 - L3 LINE CR1 -192 1385 1164 1785 159 3 24 chr12 13799277 13799572 -129986883 + AluJb SINE Alu 1 289 -23 625 285 81 62 chr12 13799572 13799731 -129986724 - L3 LINE CR1 -413 1164 1010 342 271 9 28 chr12 13799750 13799849 -129986606 - L3 LINE CR1 -677 900 802 2237 116 0 0 chr12 13799849 13800150 -129986305 - AluSx SINE Alu -11 301 1 2261 124 0 0 chr12 13800373 13800680 -129985775 + AluSx SINE Alu 1 307 -5 524 229 105 0 chr12 13800887 13800992 -129985463 - FLAM_A SINE Alu -17 116 1 368 310 56 21 chr12 13801125 13801267 -129985188 - MIR SINE MIR -24 238 92 1920 117 3 60 chr12 13801594 13801915 -129984540 - AluSx SINE Alu 0 305 2 260 331 106 35 chr12 13802040 13802294 -129984161 - L2 LINE L2 -621 2693 2422 2110 111 27 0 chr12 13802316 13802614 -129983841 - AluSx SINE Alu -4 308 3 1176 271 53 27 chr12 13807204 13807655 -129978800 - L1ME3A LINE L1 -223 5947 5485 868 202 209 39 chr12 13807848 13808105 -129978350 - L1ME4a LINE L1 0 6121 5909 2486 52 0 26 chr12 13808105 13808413 -129978042 + AluY SINE Alu 1 300 -11 868 202 209 39 chr12 13808413 13808571 -129977884 - L1ME4a LINE L1 -212 5909 5635 189 355 53 59 chr12 13808875 13809044 -129977411 - L3 LINE CR1 -75 1502 1335 693 261 85 0 chr12 13809410 13809598 -129976857 - MIR SINE MIR -50 212 9 1188 153 171 78 chr12 13810600 13810934 -129975521 - MLT1A1 LTR MaLR 0 365 1 2106 108 16 29 chr12 13811013 13811329 -129975126 - AluSq SINE Alu -1 312 1 209 265 78 29 chr12 13811867 13811969 -129974486 + MIR SINE MIR 156 262 0 699 289 70 33 chr12 13812172 13812501 -129973954 - LTR67 LTR ERVL -42 515 175 2879 168 33 33 chr12 13813807 13814028 -129972427 - L1MB4 LINE L1 -12 6168 5948 2176 110 3 13 chr12 13814028 13814337 -129972118 - AluJb SINE Alu -6 306 1 2879 168 33 33 chr12 13814337 13814691 -129971764 - L1MB4 LINE L1 -231 5949 5593 6190 180 24 61 chr12 13814714 13815552 -129970903 - L1MB3 LINE L1 -10 6409 5541 11983 34 5 0 chr12 13815552 13817683 -129968772 - L1PA4 LINE L1 -3 6152 4023 6190 180 24 61 chr12 13817683 13819228 -129967227 - L1MB3 LINE L1 -878 5541 4120 5940 68 37 37 chr12 13819234 13819437 -129967018 - SVA Other Other 0 1386 433 5940 72 42 46 chr12 13819437 13820538 -129965917 - SVA Other Other -590 1385 433 1405 96 9 60 chr12 13820552 13820887 -129965568 - SVA Other Other -520 866 549 5545 39 1 160 chr12 13820904 13821875 -129964580 - SVA Other Other -520 866 50 216 0 0 0 chr12 13821885 13821909 -129964546 + (AGGGGG)n Simple_repeat Simple_repeat 6 29 0 12642 175 31 63 chr12 13821920 13822761 -129963694 - L1MB3 LINE L1 -2260 4122 3256 1631 164 9 59 chr12 13822761 13823085 -129963370 - AluJo SINE Alu 0 312 5 12642 175 31 63 chr12 13823085 13823108 -129963347 - L1MB3 LINE L1 -3126 3256 3234 2192 109 0 29 chr12 13823108 13823419 -129963036 - AluSx SINE Alu -10 302 1 12642 175 31 63 chr12 13823419 13823995 -129962460 - L1MB3 LINE L1 -3148 3234 2641 1596 167 52 0 chr12 13823995 13824264 -129962191 - AluSx SINE Alu -23 289 7 12642 175 31 63 chr12 13824264 13824316 -129962139 - L1MB3 LINE L1 -3741 2641 2589 2059 97 3 54 chr12 13824316 13824666 -129961789 - AluY SINE Alu 0 335 1 12642 175 31 63 chr12 13824666 13824741 -129961714 - L1MB3 LINE L1 -3793 2589 2513 1717 171 4 7 chr12 13824741 13825016 -129961439 + AluJo SINE Alu 10 283 -29 12642 175 31 63 chr12 13825016 13825369 -129961086 - L1MB3 LINE L1 -3869 2513 2150 19307 59 5 4 chr12 13825369 13828515 -129957940 - L1PA6 LINE L1 0 6154 3009 12642 175 31 63 chr12 13828515 13828627 -129957828 - L1MB3 LINE L1 -4232 2150 2036 322 113 48 0 chr12 13828627 13828660 -129957795 - MER41A LTR ERV1 -88 466 436 2057 126 44 0 chr12 13828660 13828954 -129957501 + AluSx SINE Alu 1 307 -5 322 113 48 0 chr12 13828954 13828982 -129957473 - MER41A LTR ERV1 -118 436 402 12642 175 31 63 chr12 13828982 13829313 -129957142 - L1MB3 LINE L1 -4346 2036 1696 2360 69 0 20 chr12 13829313 13829616 -129956839 - AluY SINE Alu 0 311 15 12642 175 31 63 chr12 13829616 13830019 -129956436 - L1MB3 LINE L1 -4686 1696 1282 2043 144 0 3 chr12 13830019 13830318 -129956137 - AluSx SINE Alu -14 298 1 12642 175 31 63 chr12 13830318 13831738 -129954717 - L1MB3 LINE L1 -5100 1282 2 1527 161 62 19 chr12 13831726 13832050 -129954405 - L1M3 LINE L1 -578 5602 5265 * 318 323 164 23 chr12 13832260 13832480 -129953975 - MIR SINE MIR -6 256 6 484 227 0 31 chr12 13832580 13832677 -129953778 - FLAM_A SINE Alu -27 115 22 440 278 26 0 chr12 13833026 13833141 -129953314 - MIR SINE MIR -89 173 56 2429 80 0 3 chr12 13833496 13833808 -129952647 - AluY SINE Alu 0 311 1 1827 198 14 32 chr12 13833949 13834318 -129952137 - MLT1A1 LTR MaLR 0 365 4 244 232 160 33 chr12 13835024 13835205 -129951250 + L1MC4 LINE L1 7837 8040 -2 233 361 72 0 chr12 13836362 13836445 -129950010 - L2 LINE L2 -27 3245 3157 2525 60 0 3 chr12 13836480 13836779 -129949676 - AluY SINE Alu -13 298 1 24 0 0 0 chr12 13836945 13836969 -129949486 + AT_rich Low_complexity Low_complexity 1 24 0 1524 266 65 41 chr12 13837055 13837729 -129948726 - L1MC4a LINE L1 -1805 6003 5310 2412 74 3 0 chr12 13837729 13838028 -129948427 - AluSc SINE Alu -9 300 1 1524 266 65 41 chr12 13838028 13838056 -129948399 - L1MC4a LINE L1 -2498 5310 5284 1749 127 0 0 chr12 13838085 13838322 -129948133 - AluSx SINE Alu -75 237 1 3581 169 28 53 chr12 13838766 13839380 -129947075 + L1MD2 LINE L1 5555 6183 -176 1820 141 50 14 chr12 13839380 13839677 -129946778 + AluSx SINE Alu 1 308 -4 751 206 0 0 chr12 13839687 13839813 -129946642 + FLAM_A SINE Alu 2 127 -6 3581 169 28 53 chr12 13839813 13839939 -129946516 + L1MD2 LINE L1 6192 6287 -72 1719 130 24 0 chr12 13840380 13840633 -129945822 + AluJo SINE Alu 47 305 -7 2062 166 89 11 chr12 13840728 13841199 -129945256 + Charlie1b DNA MER1_type 16 523 0 27 0 0 0 chr12 13841520 13841547 -129944908 + AT_rich Low_complexity Low_complexity 1 27 0 688 253 39 11 chr12 13841631 13841813 -129944642 + MIR SINE MIR 70 256 -6 530 253 86 19 chr12 13842233 13842395 -129944060 + MIR SINE MIR 2 174 -88 2991 93 0 0 chr12 13843401 13843765 -129942690 + THE1B LTR MaLR 1 364 0 255 253 0 63 chr12 13843904 13843999 -129942456 - MER103 DNA DNA -47 119 31 1343 193 133 15 chr12 13844093 13844357 -129942098 - AluJo SINE Alu -7 295 1 1722 120 0 0 chr12 13844482 13844716 -129941739 + AluSg/x SINE Alu 76 309 -3 199 354 0 0 chr12 13844730 13844812 -129941643 - MIR3 SINE MIR -49 159 78 608 275 34 14 chr12 13844982 13845189 -129941266 - L1MC5 LINE L1 -66 7895 7685 * 903 196 14 27 chr12 13845174 13845394 -129941061 - L1MD3 LINE L1 -1 7994 7778 467 236 33 121 chr12 13845459 13845641 -129940814 + MER5B DNA MER1_type 13 178 0 1712 136 45 21 chr12 13845677 13845964 -129940491 + AluJb SINE Alu 4 297 -15 478 226 30 38 chr12 13847099 13847232 -129939223 - MIR3 SINE MIR -7 201 70 187 342 77 0 chr12 13847240 13847395 -129939060 - L2 LINE L2 -1574 1740 1574 785 297 21 0 chr12 13847625 13847861 -129938594 + MIR SINE MIR 1 241 -21 25 0 0 0 chr12 13848040 13848065 -129938390 + AT_rich Low_complexity Low_complexity 1 25 0 349 179 90 0 chr12 13850402 13850469 -129935986 + L2 LINE L2 3236 3308 -5 955 235 122 19 chr12 13850551 13850923 -129935532 - MLT1J2 LTR MaLR 0 450 47 1165 148 66 0 chr12 13851168 13851364 -129935091 + MER30 DNA MER1_type 1 209 -21 1596 169 14 35 chr12 13851377 13851667 -129934788 - AluJo SINE Alu -25 287 4 268 248 28 28 chr12 13851721 13851830 -129934625 + L1ME4a LINE L1 5997 6105 -16 225 0 0 0 chr12 13851859 13851884 -129934571 + (T)n Simple_repeat Simple_repeat 1 25 0 257 254 0 0 chr12 13851886 13851945 -129934510 - MER5A DNA MER1_type -55 134 76 1684 168 3 44 chr12 13851955 13852271 -129934184 - AluJo SINE Alu -8 304 2 240 35 0 0 chr12 13852271 13852300 -129934155 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 529 269 69 33 chr12 13852417 13852692 -129933763 - L2 LINE L2 -19 3294 3010 2237 112 3 3 chr12 13854532 13854844 -129931611 - AluSq SINE Alu -1 312 1 2225 103 13 0 chr12 13854854 13855156 -129931299 - AluSg SINE Alu -4 306 1 330 216 52 17 chr12 13856490 13856606 -129929849 + MIR SINE MIR 33 152 -56 22 0 0 0 chr12 13856830 13856852 -129929603 + AT_rich Low_complexity Low_complexity 1 22 0 493 314 53 10 chr12 13857029 13857236 -129929219 + MIR SINE MIR 34 249 -13 2314 49 0 111 chr12 13857931 13858275 -129928180 + AluSc SINE Alu 1 306 -3 21 0 0 0 chr12 13858421 13858442 -129928013 + AT_rich Low_complexity Low_complexity 1 21 0 535 192 68 10 chr12 13859404 13859568 -129926887 + L1MA9 LINE L1 6130 6299 -1 258 290 130 22 chr12 13859834 13859972 -129926483 + MER117 DNA MER1_type 10 162 -35 4474 174 20 0 chr12 13860012 13860821 -129925634 - L1MB7 LINE L1 -19 6165 5341 381 229 114 69 chr12 13861100 13861275 -129925180 - MIR SINE MIR -43 219 37 2193 118 3 0 chr12 13861827 13862124 -129924331 + AluSx SINE Alu 1 298 -14 1785 155 14 3 chr12 13862481 13862771 -129923684 + AluJo SINE Alu 1 293 -19 579 284 14 30 chr12 13863441 13863657 -129922798 - MIR SINE MIR -12 250 40 2166 36 0 4 chr12 13863717 13863970 -129922485 + AluY SINE Alu 1 252 -59 261 0 0 0 chr12 13864449 13864478 -129921977 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 773 131 16 0 chr12 13864898 13865020 -129921435 - AluSg/x SINE Alu 0 312 189 2271 103 0 10 chr12 13865020 13865320 -129921135 + AluSg SINE Alu 1 297 -13 1469 87 5 10 chr12 13865331 13865526 -129920929 - AluSp SINE Alu -119 194 1 4781 225 59 26 chr12 13865526 13865643 -129920812 - L1MB7 LINE L1 -957 5189 5077 2087 128 7 7 chr12 13865643 13865941 -129920514 - AluSq SINE Alu -15 298 1 4781 225 59 26 chr12 13865941 13867225 -129919230 - L1MB7 LINE L1 -1069 5077 3741 1564 220 0 13 chr12 13867490 13867803 -129918652 - AluJb SINE Alu -3 309 1 463 241 143 92 chr12 13867815 13868185 -129918270 - MLT1J LTR MaLR -2 509 121 * 934 169 97 48 chr12 13868169 13868417 -129918038 - MER110A LTR ERV1 -208 260 1 215 197 0 98 chr12 13868425 13868486 -129917969 + L2 LINE L2 3207 3261 -11 426 283 14 21 chr12 13868495 13868640 -129917815 - MIR SINE MIR -2 260 117 438 243 108 0 chr12 13868654 13868765 -129917690 - L2 LINE L2 0 3313 3191 219 347 53 21 chr12 13868765 13868860 -129917595 - MIR SINE MIR -159 103 6 2048 114 34 3 chr12 13868982 13869279 -129917176 - AluSx SINE Alu -6 306 1 414 262 78 0 chr12 13869649 13869790 -129916665 + MER113 DNA MER1_type? 345 496 -25 1083 173 5 0 chr12 13871303 13871488 -129914967 - AluJb SINE Alu -12 300 115 28 29 0 0 chr12 13872383 13872418 -129914037 + AT_rich Low_complexity Low_complexity 1 35 0 948 175 0 0 chr12 13873275 13873429 -129913026 - FRAM SINE Alu -27 149 1 21 0 0 0 chr12 13873429 13873450 -129913005 + AT_rich Low_complexity Low_complexity 1 21 0 1368 216 163 41 chr12 13874000 13874589 -129911866 + MLT2F LTR ERVL 1 661 -2 377 263 51 17 chr12 13874785 13874903 -129911552 + MIR3 SINE MIR 87 208 0 2183 98 0 11 chr12 13875402 13875687 -129910768 + AluSq SINE Alu 1 282 -31 1713 143 0 60 chr12 13876293 13876414 -129910041 + Charlie3 DNA MER1_type 1 128 -2584 2303 81 3 0 chr12 13876414 13876699 -129909756 - AluSg SINE Alu -24 286 1 1713 143 0 60 chr12 13876699 13876980 -129909475 + Charlie3 DNA MER1_type 128 2712 0 4000 123 121 102 chr12 13877953 13879309 -129907146 - pTR5 LTR ERV1 0 2438 734 2139 117 21 0 chr12 13879312 13879603 -129906852 - AluSq SINE Alu -16 297 1 1865 130 20 37 chr12 13884668 13884967 -129901488 - AluJo SINE Alu -18 294 1 565 241 116 19 chr12 13885224 13885431 -129901024 - MIR SINE MIR -29 233 7 2047 111 21 0 chr12 13887070 13887350 -129899105 - AluSx SINE Alu -26 286 1 245 234 226 24 chr12 13888621 13888745 -129897710 + L1ME4a LINE L1 5967 6115 -6 1713 140 15 11 chr12 13889053 13889318 -129897137 - AluJo SINE Alu -20 292 27 220 216 0 0 chr12 13889690 13889741 -129896714 + T-rich Low_complexity Low_complexity 1 51 0 627 282 45 10 chr12 13889741 13889943 -129896512 - MIR SINE MIR -53 209 1 202 193 35 0 chr12 13890282 13890339 -129896116 + A-rich Low_complexity Low_complexity 1 59 0 2114 107 40 7 chr12 13890944 13891243 -129895212 - AluSx SINE Alu -3 309 1 2379 82 0 7 chr12 13891342 13891633 -129894822 - AluSx SINE Alu -13 299 11 1282 181 127 8 chr12 13891850 13892110 -129894345 - AluSg SINE Alu -19 291 1 2429 92 0 0 chr12 13892118 13892424 -129894031 - AluY SINE Alu -5 306 1 333 0 0 0 chr12 13892813 13892850 -129893605 + (TG)n Simple_repeat Simple_repeat 1 37 0 276 325 98 49 chr12 13893916 13894264 -129892191 + L2 LINE L2 2155 2519 -795 2229 105 3 7 chr12 13895128 13895434 -129891021 + AluSp SINE Alu 1 305 -8 509 214 9 0 chr12 13896216 13896328 -129890127 - MIR SINE MIR 0 262 150 1252 170 0 19 chr12 13896328 13896540 -129889915 - AluJo SINE Alu -95 217 10 26 0 0 0 chr12 13897485 13897511 -129888944 + AT_rich Low_complexity Low_complexity 1 26 0 755 197 0 0 chr12 13897559 13897681 -129888774 - FLAM_A SINE Alu -11 122 1 21 36 0 0 chr12 13897800 13897828 -129888627 + AT_rich Low_complexity Low_complexity 1 28 0 5835 229 141 23 chr12 13898025 13900372 -129886083 + L2 LINE L2 705 3313 0 447 253 188 29 chr12 13901324 13901494 -129884961 + MIR SINE MIR 60 256 -6 308 104 0 0 chr12 13901525 13901573 -129884882 + L1MB8 LINE L1 6131 6178 0 285 342 171 5 chr12 13902251 13902450 -129884005 - MIR SINE MIR -29 233 2 1451 153 41 25 chr12 13903306 13903620 -129882835 + MER33 DNA MER1_type 6 324 0 182 283 0 131 chr12 13903757 13903856 -129882599 + MIR SINE MIR 23 108 -154 2306 78 0 0 chr12 13904022 13904335 -129882120 + AluSc SINE Alu 1 313 0 185 319 33 33 chr12 13904401 13904492 -129881963 + L3b LINE CR1 1408 1498 -85 305 346 31 15 chr12 13904550 13904680 -129881775 + MIR3 SINE MIR 62 193 -15 1621 177 0 11 chr12 13904711 13905039 -129881416 - AluJb SINE Alu 0 336 12 198 261 104 61 chr12 13905577 13905692 -129880763 + MIR SINE MIR 61 180 -82 23 0 0 0 chr12 13907027 13907050 -129879405 + AT_rich Low_complexity Low_complexity 1 23 0 218 352 9 48 chr12 13907675 13907780 -129878675 + MIR3 SINE MIR 4 104 -104 2412 72 10 0 chr12 13908042 13908347 -129878108 + AluSq SINE Alu 1 308 -5 2010 100 4 0 chr12 13908883 13909142 -129877313 - AluSp SINE Alu -12 301 42 712 252 88 17 chr12 13909316 13909554 -129876901 + MIR SINE MIR 5 259 -3 2135 73 4 0 chr12 13909556 13909816 -129876639 - AluSx SINE Alu -11 301 41 346 269 45 32 chr12 13910020 13910176 -129876279 - MER103 DNA DNA -8 158 1 1842 142 24 7 chr12 13910598 13910893 -129875562 - AluJb SINE Alu -12 300 1 1176 141 0 101 chr12 13910988 13911215 -129875240 + AluJb SINE Alu 86 289 -23 515 286 103 17 chr12 13911352 13911527 -129874928 - MIR SINE MIR -13 249 60 2336 86 3 0 chr12 13913936 13914240 -129872215 - AluSp SINE Alu -8 305 1 212 306 32 0 chr12 13915543 13915605 -129870850 + L2 LINE L2 2875 2938 -334 229 217 66 19 chr12 13915691 13915797 -129870658 + MER112 DNA MER1_type 11 121 -139 357 323 57 16 chr12 13915956 13916080 -129870375 + L2 LINE L2 3136 3264 -8 588 327 70 49 chr12 13916910 13917552 -129868903 - L2 LINE L2 -9 3263 2596 227 323 88 93 chr12 13917726 13918169 -129868286 + L2 LINE L2 2831 3271 -1 2626 141 83 4 chr12 13918531 13919022 -129867433 - L1MA9 LINE L1 0 6312 5783 221 304 54 22 chr12 13919852 13919944 -129866511 + MIR3 SINE MIR 88 182 -26 237 290 125 62 chr12 13920435 13920611 -129865844 - MIR SINE MIR -56 206 20 1654 169 45 10 chr12 13920999 13921289 -129865166 - AluJo SINE Alu -11 301 2 22 56 0 0 chr12 13921448 13921484 -129864971 + AT_rich Low_complexity Low_complexity 1 36 0 2333 95 3 3 chr12 13921662 13921958 -129864497 - AluSp SINE Alu -17 296 1 2230 122 0 0 chr12 13922109 13922404 -129864051 - AluSx SINE Alu -15 297 3 965 166 25 0 chr12 13922472 13922635 -129863820 - FRAM SINE Alu -10 166 1 2202 118 7 0 chr12 13924563 13924867 -129861588 + AluSx SINE Alu 1 306 -6 25 31 0 0 chr12 13925614 13925646 -129860809 + AT_rich Low_complexity Low_complexity 1 32 0 2192 122 0 0 chr12 13928898 13929194 -129857261 - AluJb SINE Alu -16 296 1 459 264 28 21 chr12 13929464 13929608 -129856847 + MIR SINE MIR 64 208 -54 246 145 29 58 chr12 13931151 13931220 -129855235 + L1MA10 LINE L1 6265 6331 -3 21 36 0 0 chr12 13931250 13931278 -129855177 + AT_rich Low_complexity Low_complexity 1 28 0 327 260 101 66 chr12 13931282 13931509 -129854946 - L1MC4a LINE L1 -1725 6083 5849 2334 72 21 0 chr12 13931602 13931893 -129854562 - AluSp SINE Alu -15 298 2 900 158 8 0 chr12 13931921 13932054 -129854401 + AluJo SINE Alu 1 134 -178 279 0 0 0 chr12 13932062 13932093 -129854362 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr12 13932565 13932587 -129853868 + AT_rich Low_complexity Low_complexity 1 22 0 666 58 0 11 chr12 13933846 13933933 -129852522 + L1PA7 LINE L1 6057 6142 -12 299 253 133 0 chr12 13934922 13934997 -129851458 - L2 LINE L2 0 3313 3229 506 284 98 30 chr12 13935045 13935309 -129851146 - L2 LINE L2 -74 3239 2958 1960 159 7 3 chr12 13935439 13935740 -129850715 - AluJo SINE Alu -10 302 1 4735 160 48 12 chr12 13935744 13936889 -129849566 - L1MA8 LINE L1 -4 6287 5102 285 125 0 0 chr12 13937751 13937791 -129848664 + AluSx SINE Alu 1 40 -263 1805 125 4 0 chr12 13937956 13938204 -129848251 + AluSx SINE Alu 38 286 -26 2741 16 0 0 chr12 13938207 13938514 -129847941 + AluYb8 SINE Alu 1 307 -11 226 224 32 83 chr12 13938559 13938715 -129847740 + L1ME LINE L1 5724 5871 -250 2302 102 0 3 chr12 13938998 13939301 -129847154 + AluSx SINE Alu 3 304 -8 293 339 8 31 chr12 13940053 13940183 -129846272 + MIR SINE MIR 19 145 -63 1776 74 39 0 chr12 13990458 13990689 -129795766 - AluSx SINE Alu -9 303 64 617 233 59 68 chr12 13990792 13990991 -129795464 + L1ME LINE L1 5448 5646 -475 2207 83 0 48 chr12 13990991 13991304 -129795151 + AluSg SINE Alu 1 298 -12 617 233 59 68 chr12 13991304 13991340 -129795115 + L1ME LINE L1 5646 5681 -440 1758 135 3 57 chr12 13991450 13991595 -129794860 + AluJo SINE Alu 5 127 -185 2071 109 29 26 chr12 13991595 13991906 -129794549 + AluSp SINE Alu 1 312 -1 1758 135 3 57 chr12 13991906 13992057 -129794398 + AluJo SINE Alu 127 285 -27 655 329 132 29 chr12 13992246 13992617 -129793838 - L2 LINE L2 -786 2528 2197 2277 100 0 0 chr12 13992617 13992908 -129793547 + AluSq SINE Alu 1 291 -22 655 329 132 29 chr12 13992908 13993269 -129793186 - L2 LINE L2 -1117 2197 1720 21 36 0 0 chr12 13993571 13993599 -129792856 + AT_rich Low_complexity Low_complexity 1 28 0 2044 128 20 0 chr12 13993715 13994012 -129792443 - AluJb SINE Alu -9 303 1 1304 195 14 48 chr12 13994152 13994471 -129791984 + AluJo SINE Alu 1 309 0 2320 113 3 0 chr12 13994540 13994851 -129791604 - AluSx SINE Alu 0 312 1 1707 151 21 28 chr12 13994951 13995242 -129791213 - AluJo SINE Alu -23 289 1 2202 126 3 0 chr12 13995634 13995935 -129790520 + AluSg SINE Alu 1 302 -8 529 248 68 0 chr12 13996075 13996208 -129790247 - MIR SINE MIR -74 188 47 479 259 167 12 chr12 13996432 13996594 -129789861 + MIR SINE MIR 55 241 -21 240 100 25 0 chr12 13996928 13996968 -129789487 - L1ME4a LINE L1 -11 6110 6070 483 115 4 24 chr12 13996970 13997224 -129789231 + AluSx SINE Alu 1 323 0 799 133 19 38 chr12 13997335 13997493 -129788962 - L1MA9 LINE L1 0 6312 6158 26 64 0 0 chr12 13997772 13997819 -129788636 + AT_rich Low_complexity Low_complexity 1 47 0 539 186 97 0 chr12 13998179 13998303 -129788152 + MIR SINE MIR 83 218 -44 494 269 54 21 chr12 13998713 13998899 -129787556 + MIR SINE MIR 1 192 -70 2059 127 0 13 chr12 13998913 13999234 -129787221 + AluSq SINE Alu 1 313 0 342 0 0 0 chr12 13999241 13999279 -129787176 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 1413 164 56 19 chr12 13999280 13999549 -129786906 - AluJb SINE Alu -33 279 1 2288 181 31 43 chr12 13999816 14000324 -129786131 - MLT1D LTR MaLR 0 505 4 1548 83 5 0 chr12 14000574 14000766 -129785689 + AluSg SINE Alu 1 193 -117 1671 184 24 10 chr12 14000861 14001034 -129785421 - AluJb SINE Alu -15 297 117 477 0 0 0 chr12 14001034 14001087 -129785368 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1671 184 24 10 chr12 14001087 14001206 -129785249 - AluJb SINE Alu -195 117 1 666 101 92 18 chr12 14001301 14001410 -129785045 + FRAM SINE Alu 21 137 -39 2363 92 3 0 chr12 14001754 14002048 -129784407 - AluSp SINE Alu -16 297 3 605 287 79 9 chr12 14002238 14002454 -129784001 - MIR SINE MIR -8 254 24 262 258 30 0 chr12 14002484 14002550 -129783905 + MIR3 SINE MIR 118 185 -23 1567 161 20 40 chr12 14004165 14004464 -129781991 + AluJo SINE Alu 1 293 -19 788 230 30 45 chr12 14004517 14004782 -129781673 - MIR SINE MIR -1 261 1 342 274 89 7 chr12 14004814 14004949 -129781506 - MIR SINE MIR -91 171 26 183 80 0 0 chr12 14005391 14005416 -129781039 + (A)n Simple_repeat Simple_repeat 1 25 0 374 121 15 0 chr12 14005974 14006040 -129780415 + L1MB4 LINE L1 6108 6174 -6 278 327 18 18 chr12 14006685 14006798 -129779657 - MIR SINE MIR -59 149 37 274 307 23 0 chr12 14007507 14007595 -129778860 - MIR3 SINE MIR 0 208 119 449 322 84 23 chr12 14007610 14007871 -129778584 - L3 LINE CR1 -563 1014 738 219 88 0 0 chr12 14007939 14007973 -129778482 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1573 134 69 33 chr12 14007976 14008252 -129778203 - AluJb SINE Alu -26 286 1 2056 137 0 13 chr12 14008708 14009014 -129777441 - AluSx SINE Alu -10 302 1 204 300 0 0 chr12 14009218 14009278 -129777177 + L2 LINE L2 2440 2499 -815 459 291 137 17 chr12 14009281 14009515 -129776940 - MIR SINE MIR 0 262 1 243 277 15 0 chr12 14009518 14009583 -129776872 - LTR16B LTR ERVL -110 354 289 277 312 0 0 chr12 14009631 14009788 -129776667 + (TTGG)n Simple_repeat Simple_repeat 1 157 0 266 316 0 0 chr12 14009811 14009988 -129776467 + (TTGG)n Simple_repeat Simple_repeat 1 177 0 300 311 0 0 chr12 14010011 14010188 -129776267 + (TTGG)n Simple_repeat Simple_repeat 1 177 0 252 307 6 0 chr12 14010950 14011187 -129775268 + (TTGG)n Simple_repeat Simple_repeat 1 238 0 355 251 28 22 chr12 14011196 14011375 -129775080 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 936 282 37 0 chr12 14011381 14011622 -129774833 - LTR16B LTR ERVL -167 297 48 230 391 40 6 chr12 14011699 14011873 -129774582 + L2 LINE L2 2564 2743 -571 2052 136 0 7 chr12 14011881 14012014 -129774441 + AluSx SINE Alu 2 134 -178 2523 68 0 0 chr12 14012014 14012310 -129774145 + AluY SINE Alu 1 296 -15 2052 136 0 7 chr12 14012310 14012471 -129773984 + AluSx SINE Alu 134 294 -18 215 227 0 0 chr12 14012982 14013026 -129773429 - L3 LINE CR1 -34 1543 1500 1905 136 3 57 chr12 14013298 14013615 -129772840 + AluSx SINE Alu 1 300 -12 23 68 0 0 chr12 14014279 14014323 -129772132 + AT_rich Low_complexity Low_complexity 1 44 0 680 108 117 33 chr12 14014530 14014650 -129771805 + FLAM_C SINE Alu 9 138 -5 569 265 61 85 chr12 14014663 14014707 -129771748 + L1MC4a LINE L1 4730 4774 -1558 2572 53 7 0 chr12 14014707 14015010 -129771445 + AluY SINE Alu 1 305 -6 569 265 61 85 chr12 14015010 14015529 -129770926 + L1MC4a LINE L1 4774 5304 -1028 1890 147 0 23 chr12 14015529 14015836 -129770619 + AluSx SINE Alu 1 300 -12 569 265 61 85 chr12 14015836 14015880 -129770575 + L1MC4a LINE L1 5304 5348 -984 2069 101 17 20 chr12 14015880 14016176 -129770279 + AluSp SINE Alu 1 295 -18 569 265 61 85 chr12 14016176 14016436 -129770019 + L1MC4a LINE L1 5348 5588 -744 1522 150 80 29 chr12 14016454 14016768 -129769687 - LTR10A LTR ERV1 -99 510 181 243 258 16 48 chr12 14016823 14016947 -129769508 - LTR10A LTR ERV1 -309 300 181 344 215 9 0 chr12 14017184 14017291 -129769164 + CT-rich Low_complexity Low_complexity 1 108 0 2982 63 0 0 chr12 14017464 14017831 -129768624 + L1PA5 LINE L1 5783 6149 -5 349 248 62 31 chr12 14017997 14018126 -129768329 + L1MC4a LINE L1 5810 5942 -1866 1761 161 16 29 chr12 14018368 14018678 -129767777 - AluJo SINE Alu -6 306 1 2155 108 0 41 chr12 14018691 14019006 -129767449 - AluSx SINE Alu -6 306 5 24 53 0 0 chr12 14019665 14019703 -129766752 + AT_rich Low_complexity Low_complexity 1 38 0 304 287 42 14 chr12 14019748 14019891 -129766564 + L2 LINE L2 2712 2858 -456 291 290 73 40 chr12 14020170 14020294 -129766161 + L2 LINE L2 3145 3272 0 200 111 28 0 chr12 14021433 14021469 -129764986 + (CACAA)n Simple_repeat Simple_repeat 4 40 0 2216 113 10 0 chr12 14022194 14022494 -129763961 + AluSx SINE Alu 1 303 -9 26 50 0 0 chr12 14022864 14022904 -129763551 + AT_rich Low_complexity Low_complexity 1 40 0 1120 161 0 0 chr12 14022936 14023104 -129763351 - AluJb SINE Alu -16 296 129 2268 91 0 26 chr12 14023123 14023431 -129763024 + AluSg SINE Alu 1 300 -10 692 151 92 164 chr12 14023440 14023678 -129762777 + AluJo SINE Alu 41 261 -51 2282 96 7 0 chr12 14023740 14024031 -129762424 + AluSp SINE Alu 1 293 -20 1541 127 26 136 chr12 14024408 14024754 -129761701 + AluYb8 SINE Alu 1 308 0 2379 98 0 13 chr12 14024956 14025272 -129761183 + AluSx SINE Alu 1 312 0 2504 64 0 13 chr12 14026341 14026655 -129759800 - AluY SINE Alu -1 310 1 2272 93 30 3 chr12 14027096 14027397 -129759058 + AluSx SINE Alu 1 309 -3 2519 67 3 0 chr12 14028494 14028794 -129757661 - AluY SINE Alu -10 301 1 2224 117 3 0 chr12 14028969 14029267 -129757188 + AluSx SINE Alu 1 299 -13 2361 79 3 0 chr12 14030019 14030310 -129756145 + AluY SINE Alu 6 297 -14 401 237 21 0 chr12 14030316 14030409 -129756046 - MER53 DNA DNA -94 95 1 1633 142 19 111 chr12 14030606 14030740 -129755715 - L1MB7 LINE L1 0 6184 6039 2317 97 7 0 chr12 14030740 14031050 -129755405 - AluSp SINE Alu -1 312 1 1633 142 19 111 chr12 14031050 14031339 -129755116 - L1MB7 LINE L1 -145 6039 5800 1096 152 34 0 chr12 14031339 14031517 -129754938 - AluJo SINE Alu -12 300 117 228 23 0 68 chr12 14031572 14031616 -129754839 + (TTC)n Simple_repeat Simple_repeat 1 41 0 919 192 149 18 chr12 14031621 14031642 -129754813 - L1ME3A LINE L1 -345 5825 5808 1952 155 3 3 chr12 14031642 14031951 -129754504 - AluJb SINE Alu -3 309 1 919 192 149 18 chr12 14031951 14032176 -129754279 - L1ME3A LINE L1 -362 5808 5547 2458 59 7 7 chr12 14033558 14033861 -129752594 - AluSp SINE Alu -10 303 1 2192 99 16 22 chr12 14034673 14034986 -129751469 - AluSx SINE Alu -1 311 1 1132 157 45 10 chr12 14035154 14035352 -129751103 - AluJo SINE Alu -7 305 101 1683 108 0 54 chr12 14035549 14035716 -129750739 - AluSx SINE Alu -12 300 150 1828 110 6 113 chr12 14035716 14036042 -129750413 - AluSx SINE Alu -21 291 1 1683 108 0 54 chr12 14036042 14036132 -129750323 - AluSx SINE Alu -162 150 57 2115 119 14 0 chr12 14036188 14036483 -129749972 - AluSc SINE Alu -10 299 1 422 274 115 0 chr12 14038105 14038262 -129748193 + MIR SINE MIR 88 262 0 195 42 0 0 chr12 14038332 14038356 -129748099 + (T)n Simple_repeat Simple_repeat 1 24 0 10547 59 18 42 chr12 14038356 14039776 -129746679 - SVA Other Other 0 1386 1 1748 164 13 17 chr12 14040019 14040317 -129746138 + AluSx SINE Alu 1 297 -15 1709 173 29 10 chr12 14040915 14041221 -129745234 - AluJb SINE Alu 0 312 1 366 327 74 25 chr12 14041417 14041579 -129744876 - L2 LINE L2 0 3272 3103 746 215 117 44 chr12 14041775 14041928 -129744527 - MER58A DNA MER1_type -2197 223 50 2477 88 3 0 chr12 14041928 14042236 -129744219 + AluSp SINE Alu 1 309 -4 746 215 117 44 chr12 14042236 14042287 -129744168 - MER58A DNA MER1_type -2370 50 4 305 314 0 39 chr12 14042416 14042518 -129743937 + MER5A DNA MER1_type 89 186 -3 321 272 40 32 chr12 14042531 14042656 -129743799 - L2 LINE L2 -557 2757 2632 418 349 52 15 chr12 14042657 14042904 -129743551 + MIR SINE MIR 3 255 -7 312 329 90 22 chr12 14042939 14043216 -129743239 - L2 LINE L2 -1046 2268 1973 288 318 38 15 chr12 14043890 14044022 -129742433 - L2 LINE L2 -1 3271 3137 1269 204 136 50 chr12 14044362 14044827 -129741628 + MLT1D LTR MaLR 1 505 0 2181 190 161 101 chr12 14045121 14045966 -129740489 - LTR28 LTR ERV1 0 1020 1 184 314 79 36 chr12 14046482 14046622 -129739833 + L2 LINE L2 3168 3313 0 256 306 66 8 chr12 14046625 14046746 -129739709 + MIR SINE MIR 114 241 -21 866 152 6 13 chr12 14047234 14047392 -129739063 - L1MB7 LINE L1 0 6184 6028 324 226 0 0 chr12 14047394 14047456 -129738999 + L1MC2 LINE L1 5767 5828 -516 865 142 0 0 chr12 14047461 14047588 -129738867 + FLAM_A SINE Alu 16 142 0 2241 131 117 13 chr12 14047599 14048057 -129738398 + L1MC2 LINE L1 5816 6344 0 4379 132 81 17 chr12 14048061 14048586 -129737869 - L1MB7 LINE L1 -145 6039 5549 2185 85 21 7 chr12 14048586 14048869 -129737586 - AluSc SINE Alu -21 288 2 4379 132 81 17 chr12 14048869 14049297 -129737158 - L1MB7 LINE L1 -635 5549 5005 864 177 16 47 chr12 14049297 14049489 -129736966 - AluJb SINE Alu -10 302 117 7747 211 40 27 chr12 14049489 14051534 -129734921 - L1MB7 LINE L1 -1170 4976 2905 237 183 0 118 chr12 14051538 14051631 -129734824 - L1MB7 LINE L1 -3200 2946 2865 2897 10 0 0 chr12 14052756 14053067 -129733388 - AluYa5 SINE Alu 0 311 1 21 0 0 0 chr12 14053449 14053470 -129732985 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr12 14053578 14053611 -129732844 + AT_rich Low_complexity Low_complexity 1 33 0 2144 130 0 9 chr12 14053611 14053927 -129732528 - AluSq SINE Alu 0 313 1 1102 127 0 0 chr12 14053991 14054149 -129732306 + AluSq SINE Alu 149 306 -7 986 282 113 28 chr12 14054475 14054972 -129731483 - MARNA DNA Mariner -39 547 9 23 68 0 0 chr12 14055234 14055278 -129731177 + AT_rich Low_complexity Low_complexity 1 44 0 1762 137 16 49 chr12 14055466 14055772 -129730683 + AluJo SINE Alu 3 298 -14 1673 169 26 30 chr12 14055776 14056078 -129730377 + AluJb SINE Alu 1 301 -11 180 0 0 0 chr12 14056152 14056172 -129730283 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 25 65 0 0 chr12 14056215 14056261 -129730194 + AT_rich Low_complexity Low_complexity 1 46 0 514 263 74 16 chr12 14056655 14057081 -129729374 + L1ME4a LINE L1 5350 5887 -234 2323 104 3 7 chr12 14057102 14057411 -129729044 - AluY SINE Alu -3 308 1 321 287 62 31 chr12 14057727 14057856 -129728599 + L2 LINE L2 3172 3304 -9 41 21 0 0 chr12 14058205 14058253 -129728202 + AT_rich Low_complexity Low_complexity 1 48 0 1550 146 0 8 chr12 14058449 14058688 -129727767 + AluJb SINE Alu 1 237 -75 2102 144 13 0 chr12 14058849 14059148 -129727307 + AluSx SINE Alu 1 303 -9 395 248 62 31 chr12 14059375 14059504 -129726951 - MIR SINE MIR -112 150 18 4441 155 79 13 chr12 14059510 14060354 -129726101 - L1MB5 LINE L1 0 6174 5275 6717 49 136 64 chr12 14060354 14061445 -129725010 - MER11A LTR ERVK 0 1266 1 1561 195 43 16 chr12 14061445 14061819 -129724636 - L1MB5 LINE L1 -866 5280 4897 261 0 0 0 chr12 14061917 14061946 -129724509 + (TTA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr12 14061946 14061969 -129724486 + AT_rich Low_complexity Low_complexity 1 23 0 2288 100 0 3 chr12 14062005 14062295 -129724160 - AluSx SINE Alu -19 293 5 584 138 0 0 chr12 14062388 14062482 -129723973 + L1PB3 LINE L1 6054 6147 -7 288 0 0 0 chr12 14064351 14064383 -129722072 + (CTAGT)n Simple_repeat Simple_repeat 5 36 0 269 227 127 18 chr12 14065637 14065747 -129720708 + MIR SINE MIR 74 195 -67 514 237 15 157 chr12 14066127 14066325 -129720130 + MER91A DNA MER1_type 1 170 -26 752 221 0 32 chr12 14066381 14066535 -129719920 - MER63A DNA MER1_type -2 208 60 2024 121 0 7 chr12 14066833 14067122 -129719333 - AluSx SINE Alu -25 287 1 255 128 0 0 chr12 14067757 14067796 -129718659 - MSTA LTR MaLR 0 428 390 782 69 0 0 chr12 14067796 14067897 -129718558 + AluY SINE Alu 211 311 0 2045 98 126 28 chr12 14067903 14068259 -129718196 - MSTA LTR MaLR -37 391 1 10359 156 32 2 chr12 14068259 14069862 -129716593 - MSTA-int LTR MaLR 0 1651 1 2107 134 161 13 chr12 14069862 14070235 -129716220 - MSTA LTR MaLR 0 428 1 1075 180 5 0 chr12 14070623 14070812 -129715643 - AluSg/x SINE Alu -5 305 116 839 132 25 0 chr12 14070860 14070981 -129715474 - FLAM_C SINE Alu -19 124 1 574 217 81 30 chr12 14071203 14071398 -129715057 + MER63 DNA MER1_type 1 1685 -3 366 171 299 0 chr12 14071428 14071545 -129714910 - MLT1L LTR MaLR -2 613 462 * 1527 87 9 39 chr12 14071519 14071703 -129714752 + MER41A LTR ERV1 244 421 -133 2357 110 0 0 chr12 14071703 14072011 -129714444 - AluSx SINE Alu -2 310 3 1527 87 9 39 chr12 14072011 14072056 -129714399 + MER41A LTR ERV1 421 466 -88 1360 244 111 28 chr12 14072070 14072226 -129714229 - MLT1L LTR MaLR -148 467 325 2575 82 102 3 chr12 14072226 14072569 -129713886 - MER51B LTR ERV1 0 377 1 1360 244 111 28 chr12 14072569 14072843 -129713612 - MLT1L LTR MaLR -290 325 1 1956 134 25 32 chr12 14073251 14073565 -129712890 - AluJb SINE Alu 0 312 1 2195 96 7 4 chr12 14073577 14073909 -129712546 - AluSx SINE Alu 0 333 1 2082 116 0 23 chr12 14073993 14074327 -129712128 + AluSx SINE Alu 1 327 0 1194 226 135 69 chr12 14074415 14074906 -129711549 + MLT1F1 LTR MaLR 1 525 -42 195 42 0 0 chr12 14074922 14074946 -129711509 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 835 213 0 52 chr12 14074949 14075123 -129711332 + FRAM SINE Alu 1 165 -1 608 140 83 102 chr12 14075123 14075280 -129711175 + MLT2C2 LTR ERVL 303 456 -8 454 278 113 0 chr12 14075280 14075431 -129711024 - MIR SINE MIR -94 168 1 794 171 16 0 chr12 14076107 14076236 -129710219 + FLAM_C SINE Alu 1 131 -2 21 0 0 0 chr12 14076236 14076257 -129710198 + AT_rich Low_complexity Low_complexity 1 21 0 1195 65 0 19 chr12 14076985 14077140 -129709315 + AluSg/x SINE Alu 83 234 -76 873 110 96 14 chr12 14077167 14077313 -129709142 - AluJo SINE Alu -125 187 30 2164 104 0 0 chr12 14077352 14077631 -129708824 + AluSg SINE Alu 1 279 -31 201 39 0 0 chr12 14077639 14077665 -129708790 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2612 37 0 40 chr12 14077704 14078028 -129708427 + AluY SINE Alu 1 311 0 280 291 29 0 chr12 14078083 14078186 -129708269 + MIR3 SINE MIR 103 208 0 1966 133 31 0 chr12 14079060 14079353 -129707102 + AluSx SINE Alu 1 302 -10 2467 83 0 10 chr12 14080056 14080369 -129706086 + AluSx SINE Alu 1 310 -2 489 250 109 27 chr12 14080496 14080680 -129705775 + MIR SINE MIR 20 218 -44 772 197 8 0 chr12 14084005 14084132 -129702323 + FLAM_A SINE Alu 1 128 -5 2014 114 17 0 chr12 14084689 14084979 -129701476 - AluSx SINE Alu -17 295 1 30 0 0 0 chr12 14085170 14085200 -129701255 + AT_rich Low_complexity Low_complexity 1 30 0 2462 80 0 0 chr12 14085329 14085640 -129700815 + AluY SINE Alu 1 311 0 2318 48 62 0 chr12 14086246 14086538 -129699917 + AluY SINE Alu 1 310 -1 297 273 33 33 chr12 14086672 14086793 -129699662 - L2 LINE L2 -213 3059 2939 771 216 18 30 chr12 14087087 14087254 -129699201 - MER5B DNA MER1_type -6 172 8 212 352 48 24 chr12 14087281 14087406 -129699049 + L2 LINE L2 3137 3264 -8 2276 97 7 13 chr12 14088098 14088406 -129698049 + AluSx SINE Alu 1 306 -6 434 294 192 0 chr12 14088462 14088608 -129697847 + L2 LINE L2 3099 3272 0 1939 183 62 16 chr12 14088624 14089061 -129697394 + LTR37B LTR ERV1 9 465 -3 307 220 451 12 chr12 14089497 14089670 -129696785 - MIR SINE MIR -3 259 11 782 201 101 50 chr12 14090227 14090426 -129696029 - MER63A DNA MER1_type 0 210 2 960 132 0 0 chr12 14090591 14090720 -129695735 - FLAM_C SINE Alu -14 129 1 747 109 286 7 chr12 14090852 14090999 -129695456 - MER53 DNA DNA -1 188 1 620 278 84 0 chr12 14091065 14091256 -129695199 + MIR SINE MIR 9 215 -47 1916 121 0 25 chr12 14091726 14092008 -129694447 + AluSx SINE Alu 21 295 -17 2239 133 0 0 chr12 14093154 14093454 -129693001 + AluSx SINE Alu 1 300 -12 536 258 26 53 chr12 14093536 14093726 -129692729 - L2 LINE L2 -26 3287 3103 229 182 52 130 chr12 14093892 14093969 -129692486 + MLT1L LTR MaLR 217 287 -328 245 266 128 0 chr12 14094143 14094237 -129692218 + MLT1L LTR MaLR 510 615 0 434 295 175 66 chr12 14094237 14094648 -129691807 - L2 LINE L2 -234 3079 2616 2115 99 7 0 chr12 14094648 14094921 -129691534 + AluSx SINE Alu 30 304 -8 824 144 46 110 chr12 14094929 14095102 -129691353 + AluJo SINE Alu 86 247 -65 589 248 241 4 chr12 14095103 14095369 -129691086 - L2 LINE L2 -714 2600 2272 325 291 64 81 chr12 14095405 14095639 -129690816 - L2 LINE L2 0 3313 3084 3610 163 45 8 chr12 14096098 14096701 -129689754 + MLT1E2 LTR MaLR 2 626 0 184 242 0 0 chr12 14096846 14096879 -129689576 + MIR SINE MIR 30 62 -146 431 278 125 7 chr12 14096887 14097031 -129689424 + MIR3 SINE MIR 25 185 -23 243 197 113 28 chr12 14097507 14097578 -129688877 - L2 LINE L2 0 3272 3196 1420 109 5 0 chr12 14097894 14098086 -129688369 - AluSx SINE Alu -10 302 110 832 102 0 0 chr12 14098158 14098266 -129688189 - AluSx SINE Alu -205 108 1 2497 91 0 0 chr12 14098481 14098790 -129687665 + AluSx SINE Alu 1 309 -3 189 107 0 0 chr12 14099388 14099416 -129687039 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 532 105 13 0 chr12 14099417 14099493 -129686962 - MADE1 DNA Mariner -3 77 1 1823 179 0 0 chr12 14099495 14099786 -129686669 - AluSx SINE Alu -21 291 1 886 212 0 0 chr12 14099852 14099998 -129686457 + MER20 DNA MER1_type 2 147 -72 1100 179 0 36 chr12 14100002 14100197 -129686258 + AluJo SINE Alu 5 192 -120 583 191 19 0 chr12 14100254 14100359 -129686096 + AluJo SINE Alu 192 298 -14 420 85 32 106 chr12 14100364 14100458 -129685997 + MER20 DNA MER1_type 133 219 0 525 289 55 37 chr12 14100458 14100676 -129685779 + MIR SINE MIR 31 252 -10 637 230 0 18 chr12 14100691 14100856 -129685599 + L1ME4a LINE L1 5955 6116 -5 488 258 90 0 chr12 14100906 14101061 -129685394 + MIR SINE MIR 20 188 -74 1638 158 44 37 chr12 14101196 14101384 -129685071 - AluJb SINE Alu -12 300 108 2188 116 0 0 chr12 14101384 14101678 -129684777 - AluSx SINE Alu -18 294 1 1638 158 44 37 chr12 14101678 14101787 -129684668 - AluJb SINE Alu -204 108 1 1012 199 57 16 chr12 14104101 14104347 -129682108 + MIR SINE MIR 2 257 -5 25 0 0 0 chr12 14105743 14105768 -129680687 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr12 14106690 14106724 -129679731 + AT_rich Low_complexity Low_complexity 1 34 0 505 274 83 20 chr12 14107206 14107410 -129679045 - MIR SINE MIR -44 218 2 699 266 70 31 chr12 14108057 14108343 -129678112 + Charlie2 DNA MER1_type 23 319 -2543 491 228 31 16 chr12 14108350 14108477 -129677978 + Charlie2 DNA MER1_type 1855 1983 -879 918 171 0 13 chr12 14108502 14108660 -129677795 + FRAM SINE Alu 2 157 -9 758 254 132 31 chr12 14108660 14109015 -129677440 + L1MC4 LINE L1 7105 7495 -547 276 235 71 10 chr12 14109086 14109184 -129677271 + L1MC4 LINE L1 7492 7595 -447 2130 177 66 2 chr12 14109607 14110003 -129676452 - MSTA LTR MaLR 0 428 8 1770 181 136 78 chr12 14110304 14110790 -129675665 + MLT1F1 LTR MaLR 1 514 -53 234 267 0 0 chr12 14110826 14110886 -129675569 + MLT1F1 LTR MaLR 481 540 -2 227 104 21 0 chr12 14111839 14111887 -129674568 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 783 169 0 0 chr12 14113103 14113221 -129673234 - FLAM_C SINE Alu -14 119 2 2258 101 0 0 chr12 14114404 14114690 -129671765 - AluSg SINE Alu -24 286 1 789 194 61 6 chr12 14114709 14114874 -129671581 - MER5B DNA MER1_type 0 178 5 2548 57 0 25 chr12 14114878 14115195 -129671260 - AluY SINE Alu -2 309 1 355 257 193 7 chr12 14115298 14115438 -129671017 - MIR SINE MIR -62 200 35 315 0 0 0 chr12 14117029 14117064 -129669391 + (T)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr12 14117842 14117866 -129668589 + (A)n Simple_repeat Simple_repeat 1 24 0 2234 96 7 3 chr12 14119306 14119598 -129666857 - AluSg SINE Alu -17 293 1 2392 85 0 3 chr12 14119749 14120042 -129666413 + AluSg SINE Alu 1 292 -18 664 176 0 0 chr12 14120203 14120311 -129666144 + FLAM_A SINE Alu 13 120 -22 324 269 103 0 chr12 14120568 14120646 -129665809 - MLT1L LTR MaLR -226 389 304 835 165 0 0 chr12 14120668 14120801 -129665654 - FLAM_C SINE Alu 0 133 1 231 167 0 0 chr12 14120821 14120863 -129665592 + CT-rich Low_complexity Low_complexity 2 43 0 1100 192 0 0 chr12 14120868 14121050 -129665405 - AluJb SINE Alu -4 308 127 300 265 13 29 chr12 14121053 14121190 -129665265 - MLT1J LTR MaLR -310 305 106 828 144 85 42 chr12 14121390 14121651 -129664804 + MER33 DNA MER1_type 5 324 0 1644 180 41 3 chr12 14122337 14122632 -129663823 + AluJb SINE Alu 1 306 -6 188 33 0 33 chr12 14122923 14122953 -129663502 + (AATAG)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr12 14122953 14122982 -129663473 + AT_rich Low_complexity Low_complexity 1 29 0 366 264 28 111 chr12 14123721 14123865 -129662590 + L2 LINE L2 3140 3271 -1 2292 116 0 0 chr12 14124908 14125210 -129661245 + AluSx SINE Alu 1 302 -10 485 88 0 0 chr12 14125802 14125870 -129660585 - Alu SINE Alu -12 300 233 1183 101 0 0 chr12 14125870 14126018 -129660437 + AluSp SINE Alu 148 295 -18 2015 141 0 13 chr12 14126239 14126538 -129659917 - AluJo SINE Alu -17 295 1 3059 260 87 23 chr12 14126802 14128189 -129658266 + L2 LINE L2 1826 3313 0 978 186 0 6 chr12 14128404 14128587 -129657868 - AluJo SINE Alu -9 303 122 1926 117 4 0 chr12 14128678 14128944 -129657511 - AluJo SINE Alu -2 310 44 185 245 133 41 chr12 14129319 14129417 -129657038 + MIR SINE MIR 84 190 -72 2312 94 0 7 chr12 14129455 14129752 -129656703 + AluSg1 SINE Alu 1 295 -14 1768 161 11 3 chr12 14130137 14130423 -129656032 - AluJo SINE Alu -20 292 5 2311 103 0 3 chr12 14130758 14131059 -129655396 + AluSq SINE Alu 1 300 -13 1550 190 38 14 chr12 14131239 14131529 -129654926 - AluJo SINE Alu -15 297 1 2157 101 39 0 chr12 14131711 14131997 -129654458 + AluSc SINE Alu 1 297 -12 873 232 52 69 chr12 14132035 14132347 -129654108 - MLT1J1 LTR MaLR -143 368 21 362 217 0 0 chr12 14132356 14132416 -129654039 + FRAM/FAM SINE Alu 31 90 -76 973 161 19 0 chr12 14133366 14133521 -129652934 - FRAM SINE Alu -19 157 1 949 245 98 60 chr12 14133647 14133746 -129652709 + L2 LINE L2 2730 2824 -489 2353 101 3 7 chr12 14133746 14134052 -129652403 - AluSx SINE Alu -7 305 1 949 245 98 60 chr12 14134052 14134225 -129652230 + L2 LINE L2 2824 2989 -324 2048 132 3 0 chr12 14134225 14134520 -129651935 - AluSx SINE Alu -16 296 1 949 245 98 60 chr12 14134520 14134809 -129651646 + L2 LINE L2 2989 3312 -1 498 297 34 11 chr12 14136380 14136555 -129649900 + MIR3 SINE MIR 15 193 -15 21 36 0 0 chr12 14137519 14137547 -129648908 + GC_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr12 14141189 14141229 -129645226 + AT_rich Low_complexity Low_complexity 1 40 0 1305 132 18 27 chr12 14141300 14141520 -129644935 - MER20 DNA MER1_type -1 218 1 23 33 0 0 chr12 14142601 14142631 -129643824 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr12 14143976 14144000 -129642455 + (T)n Simple_repeat Simple_repeat 1 24 0 26 50 0 0 chr12 14144727 14144767 -129641688 + GC_rich Low_complexity Low_complexity 1 40 0 26 93 0 0 chr12 14145005 14145080 -129641375 + GC_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr12 14145129 14145153 -129641302 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr12 14145699 14145721 -129640734 + GC_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr12 14145922 14145976 -129640479 + GC_rich Low_complexity Low_complexity 1 54 0 237 196 0 0 chr12 14146047 14146098 -129640357 + (TG)n Simple_repeat Simple_repeat 2 52 0 42 48 0 0 chr12 14146322 14146385 -129640070 + GC_rich Low_complexity Low_complexity 1 63 0 228 163 0 0 chr12 14146845 14146888 -129639567 + A-rich Low_complexity Low_complexity 1 43 0 434 285 14 54 chr12 14147564 14147785 -129638670 + L3 LINE CR1 1364 1575 -2 1378 138 62 4 chr12 14147853 14148128 -129638327 + MER33 DNA MER1_type 34 324 0 1307 214 27 17 chr12 14148271 14148588 -129637867 - AluJo SINE Alu 0 321 2 198 0 0 0 chr12 14148644 14148666 -129637789 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1641 166 14 10 chr12 14148666 14148956 -129637499 - AluJo SINE Alu -21 291 1 2026 143 10 10 chr12 14149073 14149381 -129637074 + AluJb SINE Alu 1 308 -4 296 257 14 0 chr12 14149581 14149655 -129636800 + L1M4 LINE L1 4502 4576 -1570 784 172 0 15 chr12 14150114 14150248 -129636207 - FLAM_C SINE Alu 0 133 2 714 164 153 63 chr12 14150249 14150438 -129636017 + AluJo SINE Alu 54 259 -53 193 29 59 0 chr12 14150450 14150484 -129635971 + (TAA)n Simple_repeat Simple_repeat 2 37 0 246 154 0 0 chr12 14150493 14150545 -129635910 + L1MB4 LINE L1 6129 6180 0 1549 171 107 0 chr12 14150566 14150716 -129635739 - AluJo SINE Alu -21 291 158 468 0 0 0 chr12 14150716 14150768 -129635687 + (TG)n Simple_repeat Simple_repeat 1 52 0 183 42 0 0 chr12 14150767 14150791 -129635664 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 1549 171 107 0 chr12 14150768 14150903 -129635552 - AluJo SINE Alu -154 158 1 292 311 73 46 chr12 14150987 14151088 -129635367 + MIR SINE MIR 12 109 -153 2282 121 0 0 chr12 14151088 14151401 -129635054 + AluSq SINE Alu 1 313 0 292 311 73 46 chr12 14151401 14151518 -129634937 + MIR SINE MIR 109 236 -26 2470 43 0 0 chr12 14151549 14151865 -129634590 + AluY SINE Alu 1 316 0 270 133 100 0 chr12 14152014 14152074 -129634381 + L1MB4 LINE L1 6113 6178 -2 376 230 90 22 chr12 14152191 14152369 -129634086 + L1ME4a LINE L1 5209 5398 -748 2206 107 0 17 chr12 14153148 14153447 -129633008 + AluSx SINE Alu 17 310 -2 1759 152 10 40 chr12 14153721 14154024 -129632431 + AluJb SINE Alu 1 294 -18 234 221 129 57 chr12 14154067 14154207 -129632248 + L1ME4a LINE L1 5881 6030 -91 2363 96 0 3 chr12 14154292 14154593 -129631862 - AluSx SINE Alu -12 300 1 215 239 45 30 chr12 14155203 14155270 -129631185 + MIR3 SINE MIR 134 201 -7 691 163 8 0 chr12 14155818 14155941 -129630514 + FLAM_A SINE Alu 19 142 0 239 314 145 17 chr12 14155998 14156321 -129630134 - L2 LINE L2 -171 3101 2737 1103 188 82 78 chr12 14156334 14156465 -129629990 + AluJo SINE Alu 4 133 -169 225 0 0 0 chr12 14156465 14156490 -129629965 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1103 188 82 78 chr12 14156490 14156651 -129629804 + AluJo SINE Alu 133 297 -5 1752 148 49 18 chr12 14156654 14156763 -129629692 + AluJb SINE Alu 15 119 -193 2167 115 20 3 chr12 14156763 14157067 -129629388 + AluSq SINE Alu 1 309 -4 1752 148 49 18 chr12 14157067 14157241 -129629214 + AluJb SINE Alu 119 307 -5 250 246 0 0 chr12 14158622 14158679 -129627776 - MIR SINE MIR -16 246 190 1854 159 10 13 chr12 14158892 14159193 -129627262 - AluJo SINE Alu -10 302 3 556 243 133 32 chr12 14159486 14159704 -129626751 + MLT1J LTR MaLR 272 511 0 2214 118 0 13 chr12 14160506 14160673 -129625782 - AluSx SINE Alu -12 300 137 2250 114 0 0 chr12 14160673 14160970 -129625485 - AluY SINE Alu -14 297 1 2214 118 0 13 chr12 14160970 14161106 -129625349 - AluSx SINE Alu -175 137 1 450 69 0 0 chr12 14161545 14161603 -129624852 + AluJ/FLAM SINE Alu 2 59 -253 1806 153 7 31 chr12 14161909 14162203 -129624252 - AluJo SINE Alu -25 287 1 220 254 260 34 chr12 14162411 14162588 -129623867 - MIR SINE MIR 0 262 46 1398 81 0 6 chr12 14163174 14163348 -129623107 + AluSg1 SINE Alu 1 173 -136 898 111 16 0 chr12 14163469 14163624 -129622831 + AluSg1 SINE Alu 154 310 0 262 136 23 0 chr12 14163628 14163672 -129622783 + L1MC5 LINE L1 7023 7067 -894 3859 151 23 2 chr12 14163697 14164301 -129622154 - Tigger7 DNA MER2_type -1869 618 2 662 137 16 99 chr12 14164309 14164491 -129621964 - L1MC5 LINE L1 -995 6966 6800 186 103 0 0 chr12 14164601 14164630 -129621825 + (TTG)n Simple_repeat Simple_repeat 1 29 0 277 234 106 21 chr12 14164767 14164861 -129621594 + MLT1L LTR MaLR 167 268 -347 1694 147 43 0 chr12 14165120 14165401 -129621054 + AluJb SINE Alu 15 306 0 2334 93 0 3 chr12 14165407 14165707 -129620748 + AluSq SINE Alu 1 299 -14 271 219 143 0 chr12 14165913 14166018 -129620437 - L1MC5 LINE L1 -1993 5815 5696 476 292 23 41 chr12 14166530 14166749 -129619706 + L1ME LINE L1 5582 5796 -325 219 167 0 0 chr12 14166840 14166882 -129619573 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 288 0 0 0 chr12 14166882 14166914 -129619541 + (GA)n Simple_repeat Simple_repeat 2 33 0 1199 144 0 36 chr12 14166914 14167109 -129619346 - AluJo SINE Alu -39 273 86 402 285 100 102 chr12 14167109 14167403 -129619052 - LTR33A LTR ERVL -40 481 176 2265 120 0 3 chr12 14167403 14167704 -129618751 - AluSg SINE Alu -10 300 1 402 285 100 102 chr12 14167704 14167836 -129618619 - LTR33A LTR ERVL -345 176 45 1539 160 89 7 chr12 14167917 14168186 -129618269 + AluJb SINE Alu 3 293 -19 958 130 51 17 chr12 14168189 14168366 -129618089 - L1MA8 LINE L1 -5 6286 6104 561 262 0 8 chr12 14168368 14168494 -129617961 + MER2 DNA MER2_type 7 131 -214 1258 177 129 45 chr12 14168495 14168806 -129617649 - MER2 DNA MER2_type -1 344 8 432 133 36 0 chr12 14168813 14168896 -129617559 + MER2 DNA MER2_type 128 213 -132 2142 117 0 0 chr12 14169006 14169314 -129617141 - AluSx SINE Alu 0 308 1 647 112 65 0 chr12 14169314 14169421 -129617034 - L1MA8 LINE L1 -183 6108 5995 27 0 0 0 chr12 14169634 14169661 -129616794 + AT_rich Low_complexity Low_complexity 1 27 0 545 255 97 33 chr12 14169879 14170128 -129616327 - MLT1J2 LTR MaLR -11 427 169 562 177 10 0 chr12 14170158 14170254 -129616201 - MSTB1 LTR MaLR -81 351 255 787 153 0 0 chr12 14170285 14170403 -129616052 - FLAM_A SINE Alu -15 118 1 1982 151 3 10 chr12 14170640 14170951 -129615504 + AluJb SINE Alu 1 309 -3 1953 132 26 16 chr12 14171613 14171916 -129614539 + AluSx SINE Alu 1 306 -6 2088 143 0 0 chr12 14172015 14172308 -129614147 + AluSx SINE Alu 1 293 -19 1363 183 78 48 chr12 14172312 14172431 -129614024 - MER2 DNA MER2_type -1 343 229 1974 139 20 0 chr12 14172431 14172733 -129613722 + AluSx SINE Alu 1 308 -4 1363 183 78 48 chr12 14172733 14172847 -129613608 - MER2 DNA MER2_type -115 229 120 2220 97 7 3 chr12 14172847 14173136 -129613319 - AluSg SINE Alu -20 290 1 1363 183 78 48 chr12 14173136 14173234 -129613221 - MER2 DNA MER2_type -224 120 1 1607 177 20 20 chr12 14173402 14173530 -129612925 + AluJo SINE Alu 1 128 -184 216 0 0 0 chr12 14173530 14173554 -129612901 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1607 177 20 20 chr12 14173554 14173724 -129612731 + AluJo SINE Alu 127 299 -13 8903 128 89 25 chr12 14173931 14173997 -129612458 + L1MC1 LINE L1 4 64 -6362 1916 176 0 3 chr12 14173997 14174303 -129612152 + AluJb SINE Alu 1 305 -7 8903 128 89 25 chr12 14174303 14175179 -129611276 + L1MC1 LINE L1 64 883 -5543 2193 106 10 0 chr12 14175179 14175472 -129610983 + AluSg SINE Alu 1 296 -14 8903 128 89 25 chr12 14175472 14176294 -129610161 + L1MC1 LINE L1 883 1975 -4451 2919 211 44 8 chr12 14176759 14177987 -129608468 + L1MC1 LINE L1 1956 3229 -3197 1096 144 25 0 chr12 14177987 14178147 -129608308 + FRAM SINE Alu 1 163 -13 891 204 20 59 chr12 14178155 14178330 -129608125 + L1MC1 LINE L1 3228 3387 -3039 1592 188 4 7 chr12 14178330 14178601 -129607854 + AluJo SINE Alu 1 270 -42 891 204 20 59 chr12 14178601 14178729 -129607726 + L1MC1 LINE L1 3387 3519 -2907 6014 171 22 35 chr12 14178730 14179314 -129607141 + L1MC1 LINE L1 5006 5596 -1017 2228 131 0 3 chr12 14179314 14179626 -129606829 + AluSx SINE Alu 1 311 -1 6014 171 22 35 chr12 14179626 14180660 -129605795 + L1MC1 LINE L1 5596 6605 -8 1877 174 0 13 chr12 14180773 14181078 -129605377 + AluJo SINE Alu 5 305 -7 1028 137 23 137 chr12 14182553 14182816 -129603639 - MER46A DNA MER2_type 0 236 4 1773 152 9 61 chr12 14182950 14183279 -129603176 - AluJb SINE Alu 0 312 1 1826 158 0 35 chr12 14183360 14183677 -129602778 - AluJo SINE Alu -6 306 1 261 242 77 22 chr12 14183677 14183768 -129602687 + MLT1H LTR MaLR 110 205 -344 492 320 91 55 chr12 14184024 14184464 -129601991 + L2 LINE L2 2807 3262 -10 634 276 126 20 chr12 14184534 14184862 -129601593 + L1ME LINE L1 5534 5819 -302 21 71 0 0 chr12 14185100 14185142 -129601313 + AT_rich Low_complexity Low_complexity 1 42 0 974 122 6 45 chr12 14185299 14185455 -129601000 - AluJb SINE Alu -17 295 146 406 141 0 9 chr12 14185459 14185534 -129600921 - AluS SINE Alu -243 58 1 1889 152 16 10 chr12 14185623 14185933 -129600522 - AluJb SINE Alu 0 312 1 2210 102 27 3 chr12 14186210 14186505 -129599950 + AluSq SINE Alu 1 302 -11 939 93 93 47 chr12 14187423 14187595 -129598860 - AluSg/x SINE Alu -52 258 79 234 0 0 0 chr12 14188154 14188180 -129598275 + (TG)n Simple_repeat Simple_repeat 1 26 0 1416 199 28 92 chr12 14188196 14188420 -129598035 - MLT1A2 LTR MaLR 0 374 184 453 50 0 0 chr12 14188420 14188480 -129597975 + (GA)n Simple_repeat Simple_repeat 1 60 0 1416 199 28 92 chr12 14188480 14188647 -129597808 - MLT1A2 LTR MaLR -190 184 8 1293 83 10 57 chr12 14188783 14188998 -129597457 + AluY SINE Alu 99 304 0 1902 114 0 94 chr12 14189008 14189350 -129597105 + AluJo SINE Alu 1 310 -2 322 306 91 41 chr12 14189419 14189540 -129596915 + MIR SINE MIR 5 132 -76 293 269 130 19 chr12 14189675 14189783 -129596672 - MIR SINE MIR -110 152 33 1446 143 64 57 chr12 14190473 14190593 -129595862 + AluJb SINE Alu 1 119 -193 2303 100 3 0 chr12 14190593 14190882 -129595573 + AluSp SINE Alu 1 290 -23 1446 143 64 57 chr12 14190882 14191041 -129595414 + AluJb SINE Alu 119 282 -30 2518 71 0 0 chr12 14191593 14191903 -129594552 + AluY SINE Alu 1 310 -1 2206 105 26 0 chr12 14192415 14192719 -129593736 + AluSx SINE Alu 1 312 0 1665 110 42 4 chr12 14193060 14193297 -129593158 + AluSx SINE Alu 51 296 -16 180 296 68 11 chr12 14193473 14193561 -129592894 - MIR SINE MIR -46 216 124 1139 198 108 24 chr12 14194355 14194643 -129591812 - MLT1C LTR MaLR -17 450 139 1594 170 49 10 chr12 14194798 14195086 -129591369 - AluJo SINE Alu -11 301 3 2478 70 0 16 chr12 14195352 14195668 -129590787 - AluY SINE Alu 0 311 1 2290 112 0 7 chr12 14195723 14196027 -129590428 - AluSq SINE Alu -11 302 1 503 204 277 0 chr12 14197150 14197287 -129589168 + MER96 DNA MER1_type 1 175 0 898 142 14 0 chr12 14197394 14197542 -129588913 + FAM SINE Alu 1 47 -2 1258 154 34 44 chr12 14197886 14198179 -129588276 + MER33 DNA MER1_type 4 293 -31 1301 173 143 8 chr12 14198179 14198445 -129588010 + AluJo SINE Alu 1 302 0 774 212 24 18 chr12 14198450 14198615 -129587840 + FRAM SINE Alu 1 166 0 189 315 55 0 chr12 14198675 14198748 -129587707 - MIR3 SINE MIR -49 159 83 205 262 16 0 chr12 14199977 14200038 -129586417 + CT-rich Low_complexity Low_complexity 1 62 0 2376 84 3 0 chr12 14200889 14201186 -129585269 - AluSp SINE Alu -15 298 1 577 219 138 109 chr12 14202194 14202254 -129584201 + MER58A DNA MER1_type 9 66 -2354 2114 79 11 29 chr12 14202254 14202570 -129583885 - AluSq SINE Alu 0 322 12 577 219 138 109 chr12 14202570 14202718 -129583737 + MER58A DNA MER1_type 66 224 0 1829 180 0 0 chr12 14202934 14203228 -129583227 - AluJb SINE Alu -18 294 1 488 181 65 7 chr12 14203292 14203430 -129583025 - AluSg/x SINE Alu -8 301 156 2017 144 0 0 chr12 14203747 14204032 -129582423 + AluSx SINE Alu 1 285 -27 210 37 0 0 chr12 14204039 14204066 -129582389 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 299 281 141 8 chr12 14204082 14204203 -129582252 + MER5B DNA MER1_type 1 137 -41 612 180 0 0 chr12 14204337 14204459 -129581996 + AluJb SINE Alu 183 304 0 2317 112 0 0 chr12 14204694 14204998 -129581457 + AluSx SINE Alu 1 304 -8 207 0 0 0 chr12 14205073 14205096 -129581359 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2045 127 0 7 chr12 14205099 14205383 -129581072 - AluSx SINE Alu -30 282 1 1913 161 13 7 chr12 14205394 14205704 -129580751 - AluJo SINE Alu 0 312 1 229 248 234 21 chr12 14210181 14210326 -129576129 + MIR SINE MIR 21 196 -66 878 230 5 11 chr12 14210346 14210533 -129575922 + MER5A DNA MER1_type 4 189 0 30 45 0 0 chr12 14210856 14210900 -129575555 + AT_rich Low_complexity Low_complexity 1 44 0 2294 100 0 7 chr12 14211775 14212075 -129574380 - AluSx SINE Alu -14 298 1 180 260 20 0 chr12 14212413 14212463 -129573992 + L2 LINE L2 3257 3307 -6 273 209 44 44 chr12 14213625 14213716 -129572739 - MLT1J LTR MaLR -383 128 38 510 261 156 18 chr12 14214759 14214977 -129571478 - MIR SINE MIR 0 262 15 2197 95 16 33 chr12 14214977 14215281 -129571174 - AluSx SINE Alu -9 303 5 2167 126 0 0 chr12 14215305 14215599 -129570856 - AluSq SINE Alu -19 294 1 1670 164 0 15 chr12 14215599 14215873 -129570582 + AluJb SINE Alu 27 296 -16 2332 94 17 0 chr12 14216057 14216355 -129570100 + AluSx SINE Alu 1 303 -9 510 261 156 18 chr12 14216355 14216573 -129569882 + MIR SINE MIR 15 262 0 1276 163 8 17 chr12 14216849 14217088 -129569367 + AluSx SINE Alu 17 253 -59 2476 78 3 0 chr12 14217969 14218275 -129568180 - AluSc SINE Alu -2 307 1 2583 57 7 0 chr12 14218510 14218811 -129567644 + AluY SINE Alu 1 303 -8 1882 167 16 0 chr12 14219388 14219694 -129566761 - AluJb SINE Alu -1 311 1 233 54 71 36 chr12 14220048 14220104 -129566351 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2104 140 13 0 chr12 14220124 14220431 -129566024 - AluSx SINE Alu -1 311 1 1706 155 6 44 chr12 14221062 14221378 -129565077 + AluJo SINE Alu 1 304 -8 681 206 97 151 chr12 14221708 14221877 -129564578 - L2 LINE L2 0 3313 3137 926 129 0 0 chr12 14221877 14222009 -129564446 + FLAM_C SINE Alu 2 133 0 681 206 97 151 chr12 14222009 14222062 -129564393 - L2 LINE L2 -176 3137 3083 1818 194 53 55 chr12 14222062 14222568 -129563887 - MLT1D LTR MaLR 0 505 1 681 206 97 151 chr12 14222568 14222776 -129563679 - L2 LINE L2 -230 3083 2905 2160 110 20 10 chr12 14222785 14223084 -129563371 - AluSx SINE Alu -10 302 1 853 101 0 164 chr12 14223086 14223245 -129563210 - AluSq/x SINE Alu -179 133 1 3065 221 110 92 chr12 14223245 14223899 -129562556 - L2 LINE L2 -601 2713 2073 606 88 0 0 chr12 14223899 14223979 -129562476 + AluSc SINE Alu 2 81 -228 1981 117 0 0 chr12 14223979 14224244 -129562211 + AluSg1 SINE Alu 36 300 -9 3065 221 110 92 chr12 14224244 14224257 -129562198 - L2 LINE L2 -1241 2073 2062 1521 118 25 0 chr12 14224257 14224483 -129561972 + AluSc SINE Alu 72 302 0 3065 221 110 92 chr12 14224483 14224752 -129561703 - L2 LINE L2 -1252 2062 1800 2466 75 3 0 chr12 14224752 14225058 -129561397 - AluSc SINE Alu -2 307 1 3065 221 110 92 chr12 14225058 14225478 -129560977 - L2 LINE L2 -1514 1800 1247 627 148 0 0 chr12 14225529 14225630 -129560825 + FLAM_A SINE Alu 38 138 -4 2248 114 0 3 chr12 14225633 14225931 -129560524 + AluSx SINE Alu 1 297 -15 1339 296 84 18 chr12 14225970 14226484 -129559971 - LTR67 LTR ERVL -7 550 3 1988 108 54 11 chr12 14226689 14226968 -129559487 + AluSx SINE Alu 1 291 -21 192 347 97 48 chr12 14227588 14227712 -129558743 - L2 LINE L2 0 3272 3143 255 326 0 11 chr12 14227734 14227823 -129558632 - L2 LINE L2 -726 2588 2501 853 165 0 0 chr12 14228107 14228240 -129558215 + FLAM_C SINE Alu 1 133 0 2135 90 14 0 chr12 14228251 14228558 -129557897 + AluSg SINE Alu 1 311 0 388 331 137 23 chr12 14228678 14229065 -129557390 + L2 LINE L2 2354 2784 -530 2352 78 0 14 chr12 14229298 14229619 -129556836 + AluSq SINE Alu 11 313 0 960 221 32 47 chr12 14230152 14230253 -129556202 - ORSL DNA AcHobo -9 266 165 1680 132 117 8 chr12 14230253 14230518 -129555937 + AluSg1 SINE Alu 1 294 -15 802 166 25 25 chr12 14230525 14230688 -129555767 + FRAM SINE Alu 4 166 0 960 221 32 47 chr12 14230688 14230831 -129555624 - ORSL DNA AcHobo -116 159 18 2242 126 0 0 chr12 14231810 14232111 -129554344 - AluSx SINE Alu -11 301 1 312 91 0 0 chr12 14232598 14232642 -129553813 + (TA)n Simple_repeat Simple_repeat 1 44 0 2143 126 0 0 chr12 14232659 14232944 -129553511 - AluSx SINE Alu -27 285 1 4041 93 4 20 chr12 14233140 14233697 -129552758 - LTR14 LTR ERVK 0 548 1 2985 133 114 0 chr12 14233702 14234175 -129552280 + MER1A DNA MER1_type 1 527 0 450 224 119 48 chr12 14234175 14234385 -129552070 + L2 LINE L2 2626 2850 -464 2273 111 3 0 chr12 14234547 14234844 -129551611 - AluSx SINE Alu -14 298 1 354 303 201 15 chr12 14235278 14235453 -129551002 + L2 LINE L2 2925 3066 -247 1646 145 14 18 chr12 14235453 14235735 -129550720 - AluJb SINE Alu -21 291 11 354 303 201 15 chr12 14235735 14235883 -129550572 + L2 LINE L2 3066 3308 -5 664 272 65 23 chr12 14236600 14236817 -129549638 + MIR SINE MIR 28 253 -9 291 250 10 48 chr12 14237488 14237508 -129548947 + L3 LINE CR1 771 790 -787 2155 103 16 41 chr12 14237508 14237828 -129548627 - AluSx SINE Alu 0 312 1 291 250 10 48 chr12 14237828 14237911 -129548544 + L3 LINE CR1 790 870 -707 223 221 19 39 chr12 14238015 14238119 -129548336 + (TTA)n Simple_repeat Simple_repeat 2 103 0 298 233 0 0 chr12 14238135 14238195 -129548260 + L3 LINE CR1 1251 1310 -267 227 241 51 101 chr12 14238416 14238574 -129547881 - L2 LINE L2 -233 3039 2890 1499 149 58 0 chr12 14239061 14239337 -129547118 + L1MA7 LINE L1 5995 6286 -5 365 287 48 8 chr12 14240073 14240220 -129546235 - MIR SINE MIR -64 144 37 674 171 0 0 chr12 14240286 14240397 -129546058 + FLAM_C SINE Alu 5 115 -28 211 299 37 56 chr12 14240450 14240557 -129545898 - L2 LINE L2 -19 3294 3190 2499 65 0 0 chr12 14241091 14241385 -129545070 + AluY SINE Alu 1 294 -17 2310 124 11 8 chr12 14241500 14241854 -129544601 - THE1A LTR MaLR 0 355 1 295 292 132 7 chr12 14241931 14242075 -129544380 + L2 LINE L2 1948 2109 -1205 306 266 12 68 chr12 14242182 14242320 -129544135 + MER5A DNA MER1_type 27 167 -22 231 292 34 22 chr12 14242349 14242438 -129544017 + L2 LINE L2 2221 2310 -1004 2240 92 3 20 chr12 14243349 14243652 -129542803 - AluSp SINE Alu -15 298 1 233 182 0 0 chr12 14243948 14243992 -129542463 - L2 LINE L2 -9 3304 3261 1645 130 146 21 chr12 14245671 14246001 -129540454 - THE1C LTR MaLR -4 371 1 22 0 0 0 chr12 14247206 14247228 -129539227 + AT_rich Low_complexity Low_complexity 1 22 0 2173 57 23 66 chr12 14247817 14248118 -129538337 - AluY SINE Alu -23 288 1 953 206 37 32 chr12 14248144 14248362 -129538093 - MER20 DNA MER1_type 0 219 1 347 324 47 29 chr12 14248405 14248575 -129537880 - MIR SINE MIR -70 192 20 246 287 64 0 chr12 14249051 14249145 -129537310 + MIR SINE MIR 134 233 -29 1595 169 40 33 chr12 14249298 14249600 -129536855 - AluSx SINE Alu -8 304 1 1878 180 3 7 chr12 14249602 14249908 -129536547 - AluJo SINE Alu -7 305 1 351 326 37 7 chr12 14250293 14250428 -129536027 - MIR SINE MIR -75 187 49 335 246 32 63 chr12 14250517 14250643 -129535812 + MIR SINE MIR 79 200 -62 1802 141 10 87 chr12 14250664 14250716 -129535739 + MER46B DNA MER2_type 3 57 -2674 2170 82 65 0 chr12 14250716 14251008 -129535447 - AluSp SINE Alu -1 312 2 1802 141 10 87 chr12 14251008 14251344 -129535111 + MER46B DNA MER2_type 57 236 0 341 230 89 37 chr12 14251512 14251647 -129534808 - L1ME4a LINE L1 -3 6118 5977 615 273 128 54 chr12 14251672 14252156 -129534299 - L1ME4a LINE L1 -251 5870 5351 26 0 0 0 chr12 14252805 14252831 -129533624 + AT_rich Low_complexity Low_complexity 1 26 0 2073 79 7 39 chr12 14253022 14253327 -129533128 + AluY SINE Alu 1 295 -16 1820 159 10 0 chr12 14253481 14253776 -129532679 - AluJb SINE Alu -14 298 1 2067 127 7 0 chr12 14253778 14254085 -129532370 - AluSx SINE Alu -3 309 1 2057 118 3 0 chr12 14254087 14254376 -129532079 - AluSx SINE Alu -22 290 1 2249 45 18 0 chr12 14254871 14255157 -129531298 + AluY SINE Alu 1 291 -20 1516 231 56 31 chr12 14256100 14256510 -129529945 - MLT1C LTR MaLR -1 466 43 2341 100 39 30 chr12 14256510 14256871 -129529584 + THE1B LTR MaLR 1 364 0 1516 231 56 31 chr12 14256871 14256910 -129529545 - MLT1C LTR MaLR -424 43 6 2404 53 0 3 chr12 14257232 14257533 -129528922 + AluY SINE Alu 1 300 -11 347 181 0 28 chr12 14258796 14258868 -129527587 + MIR SINE MIR 80 149 -113 2025 123 24 0 chr12 14258898 14259191 -129527264 - AluSx SINE Alu -12 300 1 186 412 35 0 chr12 14259250 14259335 -129527120 - L2 LINE L2 -27 3245 3158 417 259 292 0 chr12 14259537 14259722 -129526733 + MIR SINE MIR 23 261 -1 250 330 62 9 chr12 14259746 14259858 -129526597 - MIR SINE MIR -144 118 1 195 129 0 0 chr12 14259864 14259895 -129526560 + (TG)n Simple_repeat Simple_repeat 2 32 0 1606 183 3 7 chr12 14261024 14261308 -129525147 + AluJo SINE Alu 5 287 -25 2356 76 3 0 chr12 14261485 14261787 -129524668 - AluSp SINE Alu -9 304 2 2101 108 3 3 chr12 14262253 14262548 -129523907 + AluSx SINE Alu 1 295 -17 1454 114 0 0 chr12 14263327 14263537 -129522918 + AluSg/x SINE Alu 83 292 -18 1921 125 3 3 chr12 14264157 14264444 -129522011 - AluSc SINE Alu -22 287 1 2067 127 0 0 chr12 14264448 14264748 -129521707 - AluSc SINE Alu -9 300 1 712 146 0 0 chr12 14264748 14264858 -129521597 - AluSg/x SINE Alu -5 305 196 229 200 22 0 chr12 14265204 14265249 -129521206 + Zaphod DNA AcHobo 1 46 -3985 445 152 25 0 chr12 14265331 14265410 -129521045 - L1ME LINE L1 -623 5541 5461 373 163 22 0 chr12 14265439 14265531 -129520924 + CT-rich Low_complexity Low_complexity 1 94 0 880 134 0 0 chr12 14265580 14265707 -129520748 + FLAM_C SINE Alu 5 131 -2 648 195 14 109 chr12 14265724 14265945 -129520510 - L1ME1 LINE L1 -58 6108 5909 993 186 0 0 chr12 14265945 14266112 -129520343 - AluSp SINE Alu -13 300 134 700 175 21 0 chr12 14266112 14266255 -129520200 - L1ME1 LINE L1 -257 5909 5764 486 189 0 0 chr12 14266245 14266340 -129520115 - L1 LINE L1 -2439 3707 3613 * 1459 99 5 24 chr12 14266340 14266552 -129519903 + AluSp SINE Alu 1 208 -105 1343 142 58 0 chr12 14266683 14266908 -129519547 - AluJb SINE Alu -74 238 1 576 225 8 23 chr12 14267106 14267235 -129519220 + FLAM_A SINE Alu 1 127 -6 431 233 25 75 chr12 14267235 14267386 -129519069 + MLT1E2 LTR MaLR 95 239 -266 1877 196 35 51 chr12 14267435 14267888 -129518567 + MLT1D LTR MaLR 1 446 -59 1873 123 27 0 chr12 14267890 14268182 -129518273 + AluJo SINE Alu 1 300 -12 1895 95 0 0 chr12 14268183 14268436 -129518019 + AluSq SINE Alu 1 253 -60 1686 133 50 0 chr12 14269116 14269395 -129517060 + AluSx SINE Alu 1 293 -19 2207 81 0 0 chr12 14270070 14270394 -129516061 + AluSq SINE Alu 1 324 0 2014 147 28 17 chr12 14270497 14270852 -129515603 - L1PA16 LINE L1 -5 6161 5803 807 222 20 0 chr12 14270978 14271131 -129515324 - FRAM SINE Alu -10 156 1 842 102 177 0 chr12 14272353 14272500 -129513955 - L1MA4 LINE L1 -14 6286 6114 3713 140 44 16 chr12 14273159 14273767 -129512688 + MER51A LTR ERV1 1 625 -9 2303 91 3 0 chr12 14273947 14274256 -129512199 + AluSp SINE Alu 1 310 -3 1754 156 0 44 chr12 14274630 14274945 -129511510 - AluJb SINE Alu -11 301 1 1542 201 0 3 chr12 14275210 14275503 -129510952 - AluJb SINE Alu -16 296 5 2043 195 87 9 chr12 14275542 14276004 -129510451 + MLT1D LTR MaLR 1 498 -7 388 277 190 40 chr12 14276987 14277240 -129509215 + HAL1 LINE L1 821 1111 -1396 1607 144 10 48 chr12 14277240 14277553 -129508902 + AluJo SINE Alu 1 301 -11 275 257 92 9 chr12 14277660 14277769 -129508686 + HAL1 LINE L1 1405 1522 -985 1512 118 54 0 chr12 14277789 14278010 -129508445 + AluSq SINE Alu 1 233 -80 1512 169 4 4 chr12 14278191 14278463 -129507992 - AluSg SINE Alu -37 273 2 1822 98 48 41 chr12 14278496 14278791 -129507664 + AluSc SINE Alu 4 300 -9 438 206 0 0 chr12 14278844 14278912 -129507543 - Tigger7 DNA MER2_type 0 2487 2420 562 167 0 0 chr12 14278951 14279047 -129507408 + L1MB8 LINE L1 6077 6172 -6 417 231 103 51 chr12 14279063 14279258 -129507197 + L1ME3A LINE L1 5963 6167 -3 2178 110 0 0 chr12 14279642 14279941 -129506514 + AluSx SINE Alu 1 299 -13 1272 124 112 27 chr12 14279951 14280210 -129506245 + L1MB4 LINE L1 5894 6174 -6 895 133 17 69 chr12 14280684 14280857 -129505598 - MLT2C2 LTR ERVL 0 464 301 1696 179 3 3 chr12 14280862 14281170 -129505285 - AluJb SINE Alu -4 308 1 694 275 128 25 chr12 14281184 14281667 -129504788 - L1M4 LINE L1 -866 5280 4748 1833 133 3 23 chr12 14281669 14281971 -129504484 - AluJo SINE Alu -16 296 1 1828 116 67 0 chr12 14281998 14282283 -129504172 + AluSx SINE Alu 1 304 -8 311 226 21 0 chr12 14282364 14282444 -129504011 + AluJ/monomer SINE Alu 1 53 -247 213 121 0 0 chr12 14282493 14282526 -129503929 + (T)n Simple_repeat Simple_repeat 1 33 0 1948 141 0 0 chr12 14282835 14283132 -129503323 - AluSq SINE Alu -16 297 1 1962 109 0 0 chr12 14283273 14283540 -129502915 - AluSq SINE Alu -46 267 1 1783 157 0 17 chr12 14283540 14283839 -129502616 - AluJb SINE Alu -18 294 1 2029 137 0 3 chr12 14284238 14284544 -129501911 - AluSx SINE Alu -7 305 1 373 218 0 0 chr12 14284863 14284941 -129501514 - L1MCc LINE L1 -2554 4387 4310 1670 188 0 25 chr12 14284955 14285275 -129501180 - AluJo SINE Alu 0 312 1 1729 248 80 50 chr12 14285275 14285440 -129501015 - L1MCc LINE L1 -3167 3774 3615 1985 147 0 0 chr12 14285440 14285752 -129500703 + AluSx SINE Alu 1 312 0 1729 248 80 50 chr12 14285752 14286179 -129500276 - L1MCc LINE L1 -3326 3615 3202 2283 84 0 0 chr12 14286179 14286478 -129499977 + AluSg SINE Alu 1 299 -11 1729 248 80 50 chr12 14286478 14286525 -129499930 - L1MCc LINE L1 -3739 3202 3158 1868 168 3 0 chr12 14286525 14286828 -129499627 - AluSx SINE Alu -8 304 1 1729 248 80 50 chr12 14286828 14286987 -129499468 - L1MCc LINE L1 -3783 3158 2950 1256 176 0 9 chr12 14286991 14287213 -129499242 - AluJo SINE Alu -12 300 81 390 233 110 80 chr12 14287213 14287317 -129499138 - L1MCc LINE L1 -4130 2992 2893 2348 121 69 55 chr12 14287317 14287496 -129498959 + MSTA LTR MaLR 1 176 -252 2472 74 0 0 chr12 14287496 14287808 -129498647 + AluSx SINE Alu 1 312 0 2348 121 69 55 chr12 14287808 14288050 -129498405 + MSTA LTR MaLR 176 428 0 390 233 110 80 chr12 14288050 14288360 -129498095 - L1MCc LINE L1 -4229 2893 2594 1632 165 7 20 chr12 14288360 14288663 -129497792 + AluJo SINE Alu 1 299 -13 390 233 110 80 chr12 14288663 14288853 -129497602 - L1MCc LINE L1 -4528 2594 2343 2173 104 0 0 chr12 14288853 14289160 -129497295 + AluY SINE Alu 1 307 -4 390 233 110 80 chr12 14289160 14289215 -129497240 - L1MCc LINE L1 -4779 2343 2291 509 81 0 27 chr12 14289250 14289324 -129497131 - THE1B LTR MaLR 0 364 293 1023 76 0 0 chr12 14289324 14289455 -129497000 + AluY SINE Alu 1 131 -180 1008 130 37 0 chr12 14289462 14289624 -129496831 - THE1B LTR MaLR -58 306 139 1165 103 39 0 chr12 14290390 14290546 -129495909 - THE1B LTR MaLR -202 162 1 854 272 77 6 chr12 14290562 14290931 -129495524 - L1MCc LINE L1 -4840 2282 1678 1977 150 24 45 chr12 14290937 14291311 -129495144 + Tigger3b DNA MER2_type 1 366 -865 3997 106 41 26 chr12 14291311 14291347 -129495108 + Tigger3b DNA MER2_type 561 595 -2434 2054 129 10 3 chr12 14291347 14291657 -129494798 + AluSx SINE Alu 1 312 0 3997 106 41 26 chr12 14291657 14291847 -129494608 + Tigger3b DNA MER2_type 595 781 -2248 1934 124 11 0 chr12 14291847 14292162 -129494293 + AluSp SINE Alu 1 318 0 3997 106 41 26 chr12 14292162 14292593 -129493862 + Tigger3b DNA MER2_type 781 1230 -2 489 273 53 78 chr12 14292595 14292684 -129493771 - L1MCc LINE L1 -4889 1534 1444 2488 44 0 0 chr12 14292684 14292980 -129493475 - AluY SINE Alu -15 296 1 2181 106 0 3 chr12 14292987 14293289 -129493166 - AluSq SINE Alu -12 301 1 489 273 53 78 chr12 14293289 14293321 -129493134 - L1MCc LINE L1 -4985 1438 1407 2374 61 3 0 chr12 14293321 14293616 -129492839 - AluY SINE Alu -15 296 1 489 273 53 78 chr12 14293616 14293887 -129492568 - L1MCc LINE L1 -5016 1407 1272 772 198 48 210 chr12 14294155 14294488 -129491967 - L1MC4 LINE L1 -1134 6759 6396 222 250 0 97 chr12 14295230 14295302 -129491153 - L2 LINE L2 -2 3311 3247 2255 87 0 0 chr12 14295447 14295733 -129490722 + AluSg SINE Alu 1 286 -24 313 323 16 24 chr12 14295784 14295908 -129490547 + L2 LINE L2 33 155 -3159 1502 158 74 28 chr12 14295962 14296099 -129490356 + AluJb SINE Alu 1 130 -182 1942 117 3 3 chr12 14296099 14296417 -129490038 + AluSq SINE Alu 3 320 0 1502 158 74 28 chr12 14296417 14296563 -129489892 + AluJb SINE Alu 130 298 -14 186 43 0 0 chr12 14296760 14296783 -129489672 + (TA)n Simple_repeat Simple_repeat 1 23 0 196 350 51 51 chr12 14296799 14296916 -129489539 - L2 LINE L2 -18 3254 3138 2128 92 14 3 chr12 14297007 14297299 -129489156 - AluSg SINE Alu -15 295 1 21 0 0 0 chr12 14297332 14297353 -129489102 + AT_rich Low_complexity Low_complexity 1 21 0 2200 106 0 10 chr12 14297489 14297800 -129488655 - AluSx SINE Alu -2 310 3 600 228 55 0 chr12 14297883 14298049 -129488406 - L1ME1 LINE L1 -6 6160 6001 1302 187 15 89 chr12 14298075 14298268 -129488187 - AluJo SINE Alu 0 302 96 185 62 0 31 chr12 14298268 14298300 -129488155 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1875 145 0 0 chr12 14298300 14298583 -129487872 - AluJo SINE Alu -29 283 1 1302 187 15 89 chr12 14298583 14298714 -129487741 - AluJo SINE Alu -204 98 1 334 344 0 0 chr12 14298720 14298810 -129487645 - L1MC4 LINE L1 -1339 6703 6614 * 377 300 0 0 chr12 14298776 14298866 -129487589 + L1MC4 LINE L1 6614 6703 -1339 359 244 8 89 chr12 14298824 14298890 -129487565 - L1MC3 LINE L1 -1139 6646 6593 * 2108 88 0 14 chr12 14298890 14299173 -129487282 - AluSg SINE Alu -31 279 1 359 244 8 89 chr12 14299173 14299229 -129487226 - L1MC3 LINE L1 -1192 6593 6534 1321 83 78 29 chr12 14300075 14300279 -129486176 - AluSg/x SINE Alu -18 292 79 187 154 0 0 chr12 14300304 14300343 -129486112 + MIR SINE MIR 166 204 -58 269 203 0 17 chr12 14300344 14300403 -129486052 - Tigger5 DNA MER2_type -1 2322 2265 232 241 0 0 chr12 14300386 14300440 -129486015 - Tigger5 DNA MER2_type -2269 54 1 * 1692 152 30 10 chr12 14300524 14300821 -129485634 - AluJb SINE Alu 0 312 10 2315 57 0 0 chr12 14301000 14301305 -129485150 + AluY SINE Alu 1 305 0 627 263 98 24 chr12 14301553 14301758 -129484697 - MIR SINE MIR 0 262 43 2395 112 102 37 chr12 14301764 14302004 -129484451 - MSTA LTR MaLR 0 428 150 2155 112 0 0 chr12 14302004 14302307 -129484148 + AluSx SINE Alu 1 303 -9 2395 112 102 37 chr12 14302307 14302468 -129483987 - MSTA LTR MaLR -278 150 1 2534 61 7 3 chr12 14302485 14302795 -129483660 + AluY SINE Alu 1 311 0 807 317 16 95 chr12 14303017 14303368 -129483087 + L2 LINE L2 2853 3162 -110 2863 3 0 0 chr12 14303368 14303670 -129482785 + AluYa8 SINE Alu 1 302 -8 807 317 16 95 chr12 14303670 14303769 -129482686 + L2 LINE L2 3162 3267 -5 25 31 0 0 chr12 14304170 14304202 -129482253 + AT_rich Low_complexity Low_complexity 1 32 0 1781 194 50 31 chr12 14304327 14304507 -129481948 + MLT1C LTR MaLR 1 176 -291 1883 118 0 0 chr12 14304507 14304753 -129481702 + AluSc SINE Alu 39 284 -25 189 0 0 0 chr12 14304753 14304774 -129481681 + (GA)n Simple_repeat Simple_repeat 2 22 0 1781 194 50 31 chr12 14304774 14305050 -129481405 + MLT1C LTR MaLR 175 467 0 1091 165 0 0 chr12 14305062 14305226 -129481229 - AluJb SINE Alu -14 298 135 2271 89 0 35 chr12 14305787 14306101 -129480354 - AluSx SINE Alu -9 303 1 1374 86 6 0 chr12 14306112 14306287 -129480168 + AluSq SINE Alu 130 305 -8 688 204 80 11 chr12 14306322 14306498 -129479957 + LTR41 LTR ERVL 1 188 -585 312 311 83 44 chr12 14306868 14307096 -129479359 + LTR41 LTR ERVL 508 744 -29 232 154 19 19 chr12 14307118 14307170 -129479285 + LTR33A LTR ERVL 472 523 0 280 291 13 0 chr12 14307633 14307712 -129478743 + MIR SINE MIR 164 243 -19 471 35 0 0 chr12 14307731 14307788 -129478667 + (TTCA)n Simple_repeat Simple_repeat 3 59 0 289 295 116 0 chr12 14307791 14307886 -129478569 - L2 LINE L2 -22 3250 3145 2330 103 0 0 chr12 14308237 14308539 -129477916 - AluSq SINE Alu -10 303 2 2179 81 11 73 chr12 14308539 14308687 -129477768 - L1P4 LINE L1 -553 5612 5456 2281 84 7 10 chr12 14308687 14308985 -129477470 + AluSx SINE Alu 2 298 -14 2179 81 11 73 chr12 14308985 14309206 -129477249 - L1P4 LINE L1 -709 5456 5266 468 274 29 39 chr12 14309206 14309410 -129477045 - MLT1F LTR MaLR -338 204 3 366 243 35 69 chr12 14309424 14309568 -129476887 - L2 LINE L2 -207 3065 2927 * 480 267 61 14 chr12 14309564 14309749 -129476706 + MIR SINE MIR 18 212 -40 185 213 106 0 chr12 14309813 14309860 -129476595 + MIR SINE MIR 211 262 0 2222 92 61 0 chr12 14309940 14310234 -129476221 + AluSx SINE Alu 1 312 0 333 311 31 71 chr12 14310235 14310357 -129476098 - L2 LINE L2 -453 2861 2736 1928 148 3 0 chr12 14310357 14310647 -129475808 - AluJb SINE Alu -21 291 1 333 311 31 71 chr12 14310647 14310849 -129475606 - L2 LINE L2 -578 2736 2550 183 279 0 16 chr12 14310837 14310898 -129475557 - MIR SINE MIR -96 112 53 * 1997 130 41 0 chr12 14311861 14312153 -129474302 - AluSx SINE Alu -8 304 1 186 323 32 0 chr12 14312250 14312312 -129474143 - MIR SINE MIR -111 151 88 416 292 84 7 chr12 14312361 14312515 -129473940 - MIR SINE MIR -49 213 48 192 351 99 9 chr12 14312591 14312702 -129473753 + L2 LINE L2 3149 3269 -3 393 297 23 8 chr12 14313100 14313228 -129473227 + MIR SINE MIR 90 219 -43 2197 124 0 3 chr12 14313338 14313636 -129472819 - AluSx SINE Alu -15 297 1 2368 69 25 3 chr12 14313812 14314130 -129472325 + LTR8 LTR ERV1 1 325 -366 180 0 0 0 chr12 14314789 14314809 -129471646 + (A)n Simple_repeat Simple_repeat 1 20 0 2751 88 11 0 chr12 14314809 14315184 -129471271 + LTR8 LTR ERV1 313 691 0 2511 78 0 0 chr12 14315353 14315661 -129470794 + AluY SINE Alu 1 308 -3 217 250 87 54 chr12 14315695 14315787 -129470668 + L2 LINE L2 3201 3295 -18 369 247 59 0 chr12 14316800 14316885 -129469570 + MIR SINE MIR 99 188 -74 2230 124 0 0 chr12 14317114 14317421 -129469034 + AluSx SINE Alu 1 307 -5 186 203 116 58 chr12 14317474 14317543 -129468912 - L3 LINE CR1 -847 730 658 1064 211 59 30 chr12 14317682 14317839 -129468616 - AluJo SINE Alu -9 303 135 2338 89 0 13 chr12 14317839 14318152 -129468303 - AluSg SINE Alu -1 309 1 1064 211 59 30 chr12 14318152 14318231 -129468224 - AluJo SINE Alu -177 135 60 234 0 0 0 chr12 14318288 14318314 -129468141 + (TG)n Simple_repeat Simple_repeat 1 26 0 1319 201 28 92 chr12 14318330 14318554 -129467901 - MLT1A2 LTR MaLR 0 374 184 453 50 0 0 chr12 14318554 14318614 -129467841 + (GA)n Simple_repeat Simple_repeat 1 60 0 1319 201 28 92 chr12 14318614 14318781 -129467674 - MLT1A2 LTR MaLR -190 184 8 1297 88 10 62 chr12 14318916 14319132 -129467323 + AluSg/x SINE Alu 98 303 0 1936 114 0 94 chr12 14319142 14319484 -129466971 + AluJo SINE Alu 1 310 -2 365 318 85 39 chr12 14319553 14319682 -129466773 + MIR SINE MIR 5 140 -68 336 269 130 19 chr12 14319809 14319917 -129466538 - MIR SINE MIR -110 152 33 1463 143 64 57 chr12 14320607 14320727 -129465728 + AluJb SINE Alu 1 119 -193 2317 100 3 0 chr12 14320727 14321016 -129465439 + AluSp SINE Alu 1 290 -23 1463 143 64 57 chr12 14321016 14321175 -129465280 + AluJb SINE Alu 119 282 -30 2537 71 0 0 chr12 14321727 14322037 -129464418 + AluY SINE Alu 1 310 -1 2234 105 26 0 chr12 14322549 14322853 -129463602 + AluSx SINE Alu 1 312 0 1686 110 42 4 chr12 14323194 14323431 -129463024 + AluSx SINE Alu 51 296 -16 225 296 68 11 chr12 14323607 14323695 -129462760 - MIR SINE MIR -46 216 124 1076 201 108 24 chr12 14324489 14324777 -129461678 - MLT1C LTR MaLR -17 450 139 224 304 79 95 chr12 14324901 14324932 -129461523 + L2 LINE L2 2851 2881 -391 1632 170 49 10 chr12 14324932 14325220 -129461235 - AluJo SINE Alu -11 301 3 224 304 79 95 chr12 14325220 14325441 -129461014 + L2 LINE L2 2881 3099 -173 2494 70 0 16 chr12 14325486 14325802 -129460653 - AluY SINE Alu 0 311 1 2315 112 0 7 chr12 14325857 14326161 -129460294 - AluSq SINE Alu -11 302 1 195 283 50 0 chr12 14327021 14327081 -129459374 - MIR3 SINE MIR -139 69 7 535 204 277 0 chr12 14327284 14327421 -129459034 + MER96 DNA MER1_type 1 175 0 926 142 14 0 chr12 14327528 14327676 -129458779 + FAM SINE Alu 1 47 -2 1179 154 34 44 chr12 14328020 14328313 -129458142 + MER33 DNA MER1_type 4 293 -31 1343 184 139 4 chr12 14328313 14328579 -129457876 + AluJo SINE Alu 1 302 0 811 212 24 18 chr12 14328584 14328749 -129457706 + FRAM SINE Alu 1 166 0 225 315 55 0 chr12 14328809 14328882 -129457573 - MIR3 SINE MIR -49 159 83 205 262 16 0 chr12 14330111 14330172 -129456283 + CT-rich Low_complexity Low_complexity 1 62 0 2389 84 3 0 chr12 14331023 14331320 -129455135 - AluSp SINE Alu -15 298 1 180 238 167 12 chr12 14331762 14331846 -129454609 + MIR SINE MIR 37 133 -75 310 247 143 45 chr12 14332127 14332281 -129454174 - L1 LINE L1 -3279 2867 2699 513 219 138 109 chr12 14332328 14332388 -129454067 + MER58A DNA MER1_type 9 66 -2354 2126 79 11 29 chr12 14332388 14332704 -129453751 - AluSq SINE Alu 0 322 12 513 219 138 109 chr12 14332704 14332852 -129453603 + MER58A DNA MER1_type 66 224 0 536 251 12 176 chr12 14332948 14333065 -129453390 - L1 LINE L1 -3535 2611 2477 1864 182 0 0 chr12 14333065 14333362 -129453093 - AluJb SINE Alu -15 297 1 536 251 12 176 chr12 14333362 14333426 -129453029 - L1 LINE L1 -3669 2477 2404 2675 52 0 0 chr12 14333426 14333731 -129452724 - AluY SINE Alu -6 305 1 536 251 12 176 chr12 14333731 14334038 -129452417 - L1 LINE L1 -3742 2404 2202 186 320 120 20 chr12 14334162 14334262 -129452193 - L2 LINE L2 -865 2449 2340 2451 63 3 50 chr12 14334350 14334669 -129451786 + AluY SINE Alu 1 304 -7 1959 173 0 3 chr12 14335600 14335901 -129450554 + AluSx SINE Alu 3 302 -10 2107 132 0 3 chr12 14336260 14336563 -129449892 - AluSx SINE Alu -10 302 1 319 250 74 9 chr12 14336638 14336746 -129449709 + L2 LINE L2 2175 2289 -1025 555 240 147 5 chr12 14336750 14336904 -129449551 + MIR SINE MIR 17 217 -45 2009 136 16 13 chr12 14336904 14337212 -129449243 + AluJo SINE Alu 1 309 -3 555 240 147 5 chr12 14337212 14337245 -129449210 + MIR SINE MIR 217 244 -18 225 357 159 0 chr12 14337274 14337431 -129449024 + L2 LINE L2 2298 2479 -835 22 0 0 0 chr12 14337528 14337550 -129448905 + AT_rich Low_complexity Low_complexity 1 22 0 1775 149 6 43 chr12 14337669 14337992 -129448463 - AluJo SINE Alu -1 311 1 305 269 69 91 chr12 14338158 14338333 -129448122 + MIR SINE MIR 73 243 -19 314 266 129 48 chr12 14338992 14339116 -129447339 - MIR3 SINE MIR -16 192 59 279 314 0 0 chr12 14339172 14339242 -129447213 + polypyrimidine Low_complexity Low_complexity 5 74 0 2458 69 26 3 chr12 14339269 14339575 -129446880 + AluSp SINE Alu 1 313 0 300 296 126 37 chr12 14340196 14340331 -129446124 - L2 LINE L2 -2 3270 3124 189 0 0 0 chr12 14340416 14340437 -129446018 + (A)n Simple_repeat Simple_repeat 1 21 0 626 221 100 48 chr12 14341011 14341134 -129445321 + L1MC5 LINE L1 7586 7701 -260 1726 168 3 30 chr12 14341134 14341438 -129445017 + AluJo SINE Alu 1 296 -16 2418 94 3 0 chr12 14341439 14341748 -129444707 + AluSp SINE Alu 1 310 -3 626 221 100 48 chr12 14341748 14341912 -129444543 + L1MC5 LINE L1 7700 7890 -71 1715 177 0 35 chr12 14341923 14342240 -129444215 - AluJo SINE Alu -6 306 1 365 256 132 25 chr12 14343152 14343273 -129443182 + L2 LINE L2 3137 3270 -2 207 197 13 26 chr12 14343383 14343459 -129442996 + (TA)n Simple_repeat Simple_repeat 1 75 0 2326 91 17 0 chr12 14343538 14343834 -129442621 - AluSx SINE Alu -11 301 1 243 218 36 0 chr12 14344632 14344687 -129441768 + GA-rich Low_complexity Low_complexity 2 58 0 923 234 40 5 chr12 14344728 14344929 -129441526 + MIR SINE MIR 9 216 -46 1712 123 56 15 chr12 14344941 14345209 -129441246 + AluJb SINE Alu 1 279 -33 2263 83 16 22 chr12 14345426 14345738 -129440717 + AluSp SINE Alu 1 310 -3 1774 84 0 17 chr12 14345847 14346084 -129440371 + AluY SINE Alu 79 311 0 1760 177 18 0 chr12 14346303 14346580 -129439875 - AluJo SINE Alu -30 282 1 279 358 93 0 chr12 14347875 14348026 -129438429 - MIR3 SINE MIR -7 201 37 927 132 0 22 chr12 14348470 14348606 -129437849 + FLAM_C SINE Alu 1 133 0 2320 104 0 7 chr12 14349526 14349824 -129436631 - AluSg SINE Alu -14 296 1 2564 72 0 0 chr12 14350136 14350441 -129436014 - AluY SINE Alu -6 305 1 255 253 315 14 chr12 14350533 14350679 -129435776 - L2 LINE L2 0 3313 3124 922 201 0 0 chr12 14351475 14351639 -129434816 - AluJo SINE Alu -2 300 137 793 103 0 0 chr12 14353169 14353285 -129433170 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 2126 122 0 14 chr12 14353285 14353573 -129432882 - AluSx SINE Alu -1 399 1 1309 128 21 0 chr12 14353671 14353858 -129432597 - AluJo SINE Alu -9 303 113 720 117 83 17 chr12 14354028 14354148 -129432307 - AluJo SINE Alu -183 129 2 243 88 0 0 chr12 14354261 14354295 -129432160 + (TCC)n Simple_repeat Simple_repeat 3 36 0 955 86 0 149 chr12 14354295 14354469 -129431986 - AluSg SINE Alu -162 148 1 438 69 0 0 chr12 14355866 14355924 -129430531 + (TG)n Simple_repeat Simple_repeat 1 58 0 207 293 0 40 chr12 14356217 14356292 -129430163 + CT-rich Low_complexity Low_complexity 2 73 0 28 0 0 0 chr12 14356719 14356747 -129429708 + AT_rich Low_complexity Low_complexity 1 28 0 1705 151 34 40 chr12 14356751 14357049 -129429406 - AluJb SINE Alu -16 296 1 1908 150 3 19 chr12 14357144 14357451 -129429004 - AluJo SINE Alu -6 306 5 2415 84 3 7 chr12 14358077 14358387 -129428068 - AluSp SINE Alu -4 309 1 984 319 158 10 chr12 14358390 14359068 -129427387 + L3 LINE CR1 466 1243 -334 538 265 11 95 chr12 14359075 14359127 -129427328 - MIR SINE MIR -4 258 203 2362 74 3 0 chr12 14359127 14359446 -129427009 - AluSq SINE Alu 0 320 1 538 265 11 95 chr12 14359446 14359504 -129426951 - MIR SINE MIR -59 203 142 2504 54 3 3 chr12 14359504 14359798 -129426657 - AluSp SINE Alu -19 294 1 538 265 11 95 chr12 14359798 14359949 -129426506 - MIR SINE MIR -120 142 17 318 67 0 0 chr12 14360788 14360833 -129425622 + (A)n Simple_repeat Simple_repeat 1 45 0 2314 99 0 16 chr12 14361221 14361533 -129424922 + AluSg SINE Alu 1 307 -3 496 155 12 0 chr12 14361984 14362052 -129424403 + CT-rich Low_complexity Low_complexity 4 75 -13 2282 97 7 0 chr12 14362052 14362360 -129424095 - AluY SINE Alu -1 310 1 496 155 12 0 chr12 14362360 14362375 -129424080 + CT-rich Low_complexity Low_complexity 75 88 0 1167 83 0 17 chr12 14362375 14362462 -129423993 + (TTCC)n Simple_repeat Simple_repeat 1 263 0 1167 83 0 17 chr12 14362462 14362643 -129423812 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 1029 181 9 62 chr12 14362729 14362939 -129423516 - AluJo SINE Alu -113 199 1 717 172 0 0 chr12 14363331 14363453 -129423002 - FLAM_A SINE Alu -1 141 20 2010 93 43 23 chr12 14363475 14363775 -129422680 - AluSg SINE Alu -4 306 1 351 241 89 9 chr12 14363843 14363955 -129422500 + L2 LINE L2 3158 3278 -35 2065 125 26 10 chr12 14364468 14364771 -129421684 - AluSq SINE Alu -3 310 3 399 284 49 19 chr12 14365221 14365383 -129421072 - MER5A DNA MER1_type 0 189 23 2341 137 20 29 chr12 14365820 14366229 -129420226 + MER50 LTR ERV1 1 405 -329 265 74 19 74 chr12 14366253 14366307 -129420148 + MER50 LTR ERV1 355 405 -329 1730 115 18 25 chr12 14366331 14366610 -129419845 + MER50 LTR ERV1 355 631 -103 316 123 41 27 chr12 14366613 14366686 -129419769 + MER96B DNA MER1_type? 103 176 -241 267 152 0 0 chr12 14366828 14366874 -129419581 + (TA)n Simple_repeat Simple_repeat 2 47 0 315 311 0 0 chr12 14366878 14366968 -129419487 + L1MC4 LINE L1 6614 6703 -1339 309 279 35 0 chr12 14366945 14367031 -129419424 - L1MC4 LINE L1 -1340 6702 6614 * 472 149 21 0 chr12 14367034 14367128 -129419327 + (TA)n Simple_repeat Simple_repeat 1 96 0 225 200 21 53 chr12 14367128 14367223 -129419232 + L1MC4 LINE L1 6612 6703 -1339 267 130 0 0 chr12 14367225 14367271 -129419184 - L1MC4 LINE L1 -1339 6703 6658 858 225 0 0 chr12 14367327 14367487 -129418968 - AluJ SINE Alu -22 290 131 1881 154 3 3 chr12 14367507 14367792 -129418663 - AluJo SINE Alu -27 285 1 847 130 23 8 chr12 14367813 14367944 -129418511 - AluJ SINE Alu -169 133 1 288 0 0 0 chr12 14367998 14368030 -129418425 + (TA)n Simple_repeat Simple_repeat 1 32 0 2164 128 0 7 chr12 14368031 14368335 -129418120 - AluSx SINE Alu -10 302 1 242 211 0 19 chr12 14368434 14368486 -129417969 + MER96B DNA MER1_type? 193 243 -174 287 318 54 16 chr12 14368733 14368862 -129417593 + MER91A DNA MER1_type 28 161 -35 382 286 0 9 chr12 14369066 14369171 -129417284 - MER5C DNA MER1_type -212 112 9 852 288 125 14 chr12 14369448 14369816 -129416639 - MLT1I LTR MaLR 0 409 1 23 0 0 0 chr12 14370118 14370141 -129416314 + AT_rich Low_complexity Low_complexity 1 23 0 315 85 0 0 chr12 14370141 14370188 -129416267 + (TG)n Simple_repeat Simple_repeat 2 48 0 2063 101 36 26 chr12 14370462 14370770 -129415685 - AluSq SINE Alu -2 311 1 2255 113 0 3 chr12 14370872 14371172 -129415283 - AluSg SINE Alu -11 299 1 1730 158 28 14 chr12 14371401 14371686 -129414769 + AluJo SINE Alu 1 289 -23 2403 63 3 0 chr12 14372014 14372301 -129414154 + AluY SINE Alu 15 302 -9 3853 156 21 8 chr12 14372443 14373105 -129413350 - LTR51 LTR ERV1 0 671 1 239 268 205 9 chr12 14373147 14373259 -129413196 + MARNA DNA Mariner 400 533 -53 2109 130 58 14 chr12 14373277 14373639 -129412816 - MER83B LTR ERV1 0 378 1 258 158 0 0 chr12 14374260 14374298 -129412157 - tRNA-Ile-ATT tRNA tRNA -38 39 2 23 0 0 0 chr12 14374317 14374340 -129412115 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 14374429 14374453 -129412002 + AT_rich Low_complexity Low_complexity 1 24 0 914 127 0 0 chr12 14374511 14374629 -129411826 + AluJb SINE Alu 1 118 -194 2232 113 3 7 chr12 14374629 14374938 -129411517 - AluSx SINE Alu -4 308 1 751 163 57 0 chr12 14375043 14375184 -129411271 - FRAM SINE Alu 0 176 28 1546 136 147 0 chr12 14375314 14375565 -129410890 + AluJo SINE Alu 3 290 -12 31 0 0 0 chr12 14375573 14375604 -129410851 + AT_rich Low_complexity Low_complexity 1 31 0 2423 64 0 0 chr12 14376046 14376351 -129410104 + AluSc SINE Alu 1 305 0 2256 95 0 49 chr12 14376945 14377270 -129409185 + AluSx SINE Alu 1 309 -3 325 295 0 19 chr12 14377281 14377386 -129409069 + MIR3 SINE MIR 14 116 -92 217 250 0 0 chr12 14377495 14377543 -129408912 + L2 LINE L2 3214 3261 -11 317 309 145 0 chr12 14377730 14377882 -129408573 + MIR3 SINE MIR 8 181 -27 4035 128 45 25 chr12 14378338 14379047 -129407408 + L1MB2 LINE L1 5448 6170 -1 2093 137 3 0 chr12 14379571 14379864 -129406591 - AluSx SINE Alu -18 294 1 2257 87 0 0 chr12 14381106 14381381 -129405074 + AluSx SINE Alu 1 275 -37 531 176 44 0 chr12 14381654 14381745 -129404710 - AluJ/FLAM SINE Alu -212 100 6 268 313 15 0 chr12 14381834 14381901 -129404554 + L2 LINE L2 3123 3190 -82 401 253 94 74 chr12 14381990 14382192 -129404263 + MIR SINE MIR 17 222 -40 21 0 0 0 chr12 14382278 14382299 -129404156 + AT_rich Low_complexity Low_complexity 1 21 0 725 186 16 16 chr12 14382808 14382937 -129403518 - AluJo SINE Alu -63 249 121 1148 103 0 6 chr12 14383389 14383564 -129402891 + (TTCC)n Simple_repeat Simple_repeat 1 174 0 352 106 45 0 chr12 14383564 14383630 -129402825 + CT-rich Low_complexity Low_complexity 3 71 0 202 42 0 0 chr12 14383631 14383655 -129402800 + (TC)n Simple_repeat Simple_repeat 1 24 0 1973 135 23 3 chr12 14383655 14383958 -129402497 - AluSq SINE Alu -4 309 1 310 310 150 9 chr12 14384720 14384933 -129401522 - L3b LINE CR1 -127 1456 1214 1078 121 0 11 chr12 14384946 14385128 -129401327 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2072 121 0 0 chr12 14385128 14385408 -129401047 - AluSx SINE Alu -32 280 1 236 286 33 0 chr12 14385661 14385752 -129400703 - L3b LINE CR1 -381 1202 1109 374 98 0 16 chr12 14386154 14386215 -129400240 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1877 138 27 14 chr12 14386215 14386511 -129399944 - AluJb SINE Alu -12 300 1 395 74 0 0 chr12 14389124 14389178 -129397277 - MADE1 DNA Mariner 0 80 27 2272 112 0 0 chr12 14389178 14389473 -129396982 + AluSx SINE Alu 1 295 -17 2206 115 0 26 chr12 14389476 14389788 -129396667 + AluSx SINE Alu 1 304 -8 257 139 0 0 chr12 14389800 14389843 -129396612 - MADE1 DNA Mariner -37 43 1 2264 96 34 3 chr12 14391214 14391507 -129394948 - AluSg SINE Alu -8 302 1 2339 96 0 3 chr12 14391826 14392128 -129394327 - AluSx SINE Alu -11 301 1 223 224 69 0 chr12 14393656 14393714 -129392741 - L3 LINE CR1 -7 1570 1509 1318 275 9 15 chr12 14394087 14394418 -129392037 + MER45C DNA AcHobo 1 329 -624 1072 82 11 22 chr12 14394511 14394549 -129391906 + (TTTC)n Simple_repeat Simple_repeat 1 217 0 1072 82 11 22 chr12 14394549 14394731 -129391724 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 895 112 12 18 chr12 14394775 14394944 -129391511 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 978 86 29 11 chr12 14394945 14395009 -129391446 + (TTTC)n Simple_repeat Simple_repeat 1 242 0 978 86 29 11 chr12 14395009 14395183 -129391272 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 2197 134 0 0 chr12 14395206 14395504 -129390951 - AluSx SINE Alu -14 298 1 2039 130 3 0 chr12 14396134 14396418 -129390037 + AluJb SINE Alu 1 285 -27 22 35 0 0 chr12 14396572 14396601 -129389854 + AT_rich Low_complexity Low_complexity 1 29 0 2094 112 3 17 chr12 14397094 14397406 -129389049 - AluSq SINE Alu 0 308 1 4103 102 2 3 chr12 14397491 14398072 -129388383 - L1PA14 LINE L1 -4 6157 5578 703 130 0 9 chr12 14398474 14398589 -129387866 - FRAM SINE Alu -1 175 62 29 0 0 0 chr12 14398626 14398655 -129387800 + AT_rich Low_complexity Low_complexity 1 29 0 1362 124 0 0 chr12 14398655 14398833 -129387622 + AluSg SINE Alu 1 178 -132 474 33 16 0 chr12 14398833 14398894 -129387561 + AluSc SINE Alu 228 289 -20 2054 138 7 16 chr12 14398899 14399204 -129387251 + AluSx SINE Alu 1 302 -10 663 198 33 0 chr12 14399204 14399325 -129387130 - AluJo/FLAM SINE Alu -187 125 1 1246 246 40 57 chr12 14399383 14399737 -129386718 + MLT1H1 LTR MaLR 12 359 -196 443 176 6 139 chr12 14399761 14399926 -129386529 - LTR37A LTR ERV1 -231 195 53 1726 157 50 13 chr12 14400244 14400544 -129385911 - AluJb SINE Alu -1 311 1 313 173 53 90 chr12 14400921 14401054 -129385401 - MER112 DNA MER1_type -123 137 10 2380 89 0 13 chr12 14401054 14401358 -129385097 + AluSp SINE Alu 1 300 -13 2267 125 0 0 chr12 14401641 14401953 -129384502 - AluSx SINE Alu 0 312 1 225 301 24 0 chr12 14402111 14402194 -129384261 - L2 LINE L2 -1 3312 3228 784 333 85 30 chr12 14402608 14403369 -129383086 - L2 LINE L2 0 3313 2518 1438 264 92 52 chr12 14403419 14404338 -129382117 + L2 LINE L2 2372 3312 -1 344 275 52 52 chr12 14404746 14404939 -129381516 - L2 LINE L2 -850 2464 2272 193 382 57 8 chr12 14405103 14405226 -129381229 - L2 LINE L2 0 3272 3144 1794 127 3 37 chr12 14405411 14405710 -129380745 + AluSx SINE Alu 1 289 -23 616 263 42 51 chr12 14407260 14407477 -129378978 + MIR SINE MIR 46 260 -2 2298 88 0 7 chr12 14407835 14408140 -129378315 + AluSx SINE Alu 1 303 -9 1793 149 7 0 chr12 14408794 14409109 -129377346 - AluSx SINE Alu 0 317 1 2239 103 6 3 chr12 14409681 14409992 -129376463 + AluSx SINE Alu 1 312 0 462 236 17 120 chr12 14410191 14410432 -129376023 + MLT1L LTR MaLR 98 392 -198 275 202 96 75 chr12 14410451 14410545 -129375910 + MLT1L LTR MaLR 386 586 -29 336 333 0 0 chr12 14410574 14410661 -129375794 - L2 LINE L2 -49 3223 3137 189 0 0 0 chr12 14410661 14410682 -129375773 + (A)n Simple_repeat Simple_repeat 1 21 0 716 297 175 26 chr12 14410807 14411370 -129375085 - L2 LINE L2 -167 3146 2495 375 357 79 4 chr12 14411403 14411669 -129374786 + L2 LINE L2 2033 2318 -996 1340 251 42 71 chr12 14411698 14412193 -129374262 - MER34 LTR ERV1 -61 481 1 536 319 130 17 chr12 14412196 14412497 -129373958 + L2 LINE L2 2470 2804 -510 347 296 78 0 chr12 14412556 14412671 -129373784 + MIR SINE MIR 118 241 -21 330 271 71 26 chr12 14414271 14414426 -129372029 + MIR SINE MIR 90 251 -11 276 82 61 0 chr12 14414702 14414751 -129371704 + Alu SINE Alu 251 302 0 281 284 124 41 chr12 14415390 14415559 -129370896 + L3b LINE CR1 1230 1412 -171 617 322 35 26 chr12 14415768 14415995 -129370460 + MIR SINE MIR 34 262 0 1012 195 6 0 chr12 14416082 14416256 -129370199 + FAM SINE Alu 1 175 0 624 247 49 95 chr12 14416302 14416606 -129369849 + L2 LINE L2 3022 3311 -2 285 277 123 112 chr12 14416730 14416853 -129369602 - L2 LINE L2 -455 2859 2739 2273 92 26 0 chr12 14416853 14417156 -129369299 - AluSx SINE Alu -1 311 1 285 277 123 112 chr12 14417156 14417856 -129368599 - L2 LINE L2 -575 2739 2027 243 277 36 84 chr12 14418144 14418310 -129368145 + MIR SINE MIR 60 217 -45 243 324 185 35 chr12 14419577 14420064 -129366391 - L2 LINE L2 -553 2761 2202 255 252 47 84 chr12 14420311 14420418 -129366037 + L2 LINE L2 3211 3313 0 198 348 59 22 chr12 14420480 14420615 -129365840 - L2 LINE L2 -1044 2270 2131 821 155 0 0 chr12 14420640 14420769 -129365686 - FLAM_C SINE Alu -7 136 8 562 280 57 21 chr12 14420812 14421005 -129365450 - L2 LINE L2 -86 3227 3028 435 296 0 0 chr12 14421331 14421429 -129365026 - MIR SINE MIR -118 144 47 652 251 64 15 chr12 14421517 14421720 -129364735 - MIR SINE MIR -3 259 47 2330 211 31 81 chr12 14422450 14423194 -129363261 + L1MC5 LINE L1 6712 7418 -543 991 179 0 0 chr12 14423295 14423468 -129362987 + FRAM SINE Alu 1 169 -7 701 230 77 55 chr12 14423478 14423523 -129362932 + L1MC5 LINE L1 7549 7592 -369 2007 103 14 7 chr12 14423523 14423814 -129362641 + AluSg SINE Alu 1 293 -17 701 230 77 55 chr12 14423814 14424147 -129362308 + L1MC5 LINE L1 7592 7935 -26 320 262 66 25 chr12 14424407 14424529 -129361926 - MIR SINE MIR -83 179 53 549 167 149 0 chr12 14424608 14424722 -129361733 - MER96 DNA MER1_type? -33 142 12 321 201 77 0 chr12 14426160 14426232 -129360223 + L1ME LINE L1 5527 5595 -526 408 40 0 0 chr12 14426238 14426288 -129360167 + (TC)n Simple_repeat Simple_repeat 1 50 0 1816 136 10 27 chr12 14426288 14426589 -129359866 - AluSx SINE Alu -16 296 1 460 90 0 0 chr12 14427081 14427148 -129359307 - MER41B LTR ERV1 -93 542 476 694 168 87 34 chr12 14428274 14428482 -129357973 + HAL1 LINE L1 974 1192 -1315 1236 136 5 5 chr12 14428570 14428761 -129357694 + MER2 DNA MER2_type 7 197 -148 381 22 0 0 chr12 14428770 14428816 -129357639 + (CA)n Simple_repeat Simple_repeat 1 46 0 1423 156 32 64 chr12 14428820 14429121 -129357334 - AluJo SINE Alu -8 304 12 3311 166 15 75 chr12 14429121 14429856 -129356599 + LTR8 LTR ERV1 1 691 0 1423 156 32 64 chr12 14429856 14429868 -129356587 - AluJo SINE Alu -300 12 1 401 210 12 12 chr12 14429905 14429986 -129356469 + MER2 DNA MER2_type 265 345 0 227 299 87 39 chr12 14430305 14430432 -129356023 + MER112 DNA MER1_type 23 155 -105 1968 138 0 0 chr12 14430861 14431157 -129355298 - AluSx SINE Alu -16 296 1 403 368 66 0 chr12 14431487 14431653 -129354802 - MIR3 SINE MIR -8 200 24 264 194 32 0 chr12 14431713 14431775 -129354680 + CT-rich Low_complexity Low_complexity 2 65 0 345 140 0 0 chr12 14431778 14431835 -129354620 + (TCCC)n Simple_repeat Simple_repeat 3 59 0 1267 172 18 72 chr12 14431835 14432114 -129354341 - AluJb SINE Alu -14 298 35 238 143 0 0 chr12 14432122 14432140 -129354315 - Alu SINE Alu 0 133 116 294 29 0 0 chr12 14432140 14432175 -129354280 + (TC)n Simple_repeat Simple_repeat 1 35 0 238 143 0 0 chr12 14432175 14432205 -129354250 - Alu SINE Alu -16 117 85 284 296 45 45 chr12 14432389 14432477 -129353978 - L2 LINE L2 -1 3312 3225 204 356 23 0 chr12 14433010 14433097 -129353358 - L3 LINE CR1 -680 897 809 273 263 25 12 chr12 14433335 14433415 -129353040 - MIR3 SINE MIR -6 202 122 * 361 324 29 0 chr12 14433413 14433549 -129352906 - L2 LINE L2 -1010 2304 2165 648 303 138 31 chr12 14433644 14434063 -129352392 + L2 LINE L2 2837 3300 -13 770 310 39 0 chr12 14434725 14434954 -129351501 - MIR SINE MIR -1 261 24 261 215 15 46 chr12 14435358 14435423 -129351032 - MIR SINE MIR -109 153 91 252 293 114 42 chr12 14435455 14435622 -129350833 - MIR SINE MIR -26 236 58 191 295 31 54 chr12 14435668 14435797 -129350658 - MIR SINE MIR -42 220 95 833 260 151 43 chr12 14435912 14436377 -129350078 - LTR33A LTR ERVL 0 523 9 725 236 109 26 chr12 14436744 14436973 -129349482 + L2 LINE L2 3058 3305 -8 559 231 95 107 chr12 14436974 14437217 -129349238 + MER102a DNA MER1_type 91 330 0 2422 164 87 8 chr12 14437797 14438278 -129348177 - MER44D DNA MER2_type 0 605 32 278 211 68 27 chr12 14438807 14438954 -129347501 + (CGG)n Simple_repeat Simple_repeat 2 154 0 273 172 31 115 chr12 14438889 14439081 -129347374 + (CGGGG)n Simple_repeat Simple_repeat 2 177 0 * 214 305 92 7 chr12 14439510 14439651 -129346804 + L2 LINE L2 2593 2745 -569 2054 124 0 10 chr12 14442556 14442863 -129343592 - AluSq SINE Alu -9 304 1 339 278 52 19 chr12 14443454 14443586 -129342869 - MIR SINE MIR -70 138 5 1667 163 42 0 chr12 14443786 14444074 -129342381 - AluJb SINE Alu -12 300 1 1392 176 31 10 chr12 14444076 14444365 -129342090 - AluJo SINE Alu -17 295 1 721 200 47 24 chr12 14444670 14444840 -129341615 - MER104 DNA Tc2 -1 179 6 338 229 46 120 chr12 14445131 14445209 -129341246 + MIR SINE MIR 50 109 -153 914 118 0 22 chr12 14445209 14445345 -129341110 - FLAM_C SINE Alu 0 133 1 338 229 46 120 chr12 14445345 14445441 -129341014 + MIR SINE MIR 109 211 -51 1924 87 45 74 chr12 14445576 14445887 -129340568 - AluSx SINE Alu -10 302 1 1936 106 48 7 chr12 14445982 14446275 -129340180 + MER4D LTR ERV1 1 305 -598 2060 128 0 10 chr12 14446278 14446591 -129339864 + AluSx SINE Alu 2 311 -1 219 325 20 66 chr12 14446598 14446749 -129339706 - L2 LINE L2 -1778 1536 1393 2234 91 3 3 chr12 14447117 14447425 -129339030 - AluSg SINE Alu -2 308 1 874 186 55 42 chr12 14447459 14447766 -129338689 - L1MA8 LINE L1 0 6291 5981 258 32 0 0 chr12 14448260 14448291 -129338164 + (T)n Simple_repeat Simple_repeat 1 31 0 455 295 14 76 chr12 14449130 14449281 -129337174 + MIR SINE MIR 17 153 -109 2346 58 3 3 chr12 14449281 14449575 -129336880 + AluSp SINE Alu 1 294 -19 455 295 14 76 chr12 14449575 14449633 -129336822 + MIR SINE MIR 153 213 -49 2125 106 0 16 chr12 14449634 14449945 -129336510 + AluSg SINE Alu 2 307 -3 2169 97 7 0 chr12 14450395 14450772 -129335683 - AluY SINE Alu 0 379 1 1113 90 11 11 chr12 14450895 14451073 -129335382 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 988 171 9 62 chr12 14451097 14451307 -129335148 - AluJo SINE Alu -113 199 1 720 172 0 0 chr12 14451699 14451821 -129334634 - FLAM_A SINE Alu -1 141 20 1894 107 43 17 chr12 14451843 14452143 -129334312 - AluSg SINE Alu -2 308 1 397 241 89 9 chr12 14452211 14452323 -129334132 + L2 LINE L2 3158 3278 -35 1943 125 26 10 chr12 14452836 14453139 -129333316 - AluSq SINE Alu -3 310 3 460 284 49 19 chr12 14453589 14453751 -129332704 - MER5A DNA MER1_type 0 189 23 2374 137 20 29 chr12 14454188 14454597 -129331858 + MER50 LTR ERV1 1 405 -329 273 74 19 74 chr12 14454621 14454675 -129331780 + MER50 LTR ERV1 355 405 -329 1740 115 18 25 chr12 14454699 14454978 -129331477 + MER50 LTR ERV1 355 631 -103 316 125 41 27 chr12 14454975 14455054 -129331401 + MER96B DNA MER1_type? 97 176 -241 * 378 270 37 0 chr12 14455198 14455361 -129331094 + (CATATA)n Simple_repeat Simple_repeat 2 170 0 345 250 11 33 chr12 14455364 14455456 -129330999 - L1MC4 LINE L1 -1339 6703 6614 * 383 258 11 21 chr12 14455383 14455476 -129330979 + L1MC4 LINE L1 6612 6703 -1339 229 196 0 0 chr12 14455484 14455530 -129330925 - L1MC4 LINE L1 -1339 6703 6658 858 215 5 42 chr12 14455586 14455800 -129330655 - AluJb SINE Alu -22 290 131 1867 158 3 3 chr12 14455766 14456051 -129330404 - AluJo SINE Alu -27 285 1 1909 149 7 0 chr12 14456623 14456938 -129329517 + AluSx SINE Alu 1 317 0 2422 89 0 7 chr12 14457592 14457896 -129328559 - AluSx SINE Alu -10 302 1 519 258 46 55 chr12 14458254 14458471 -129327984 - MIR SINE MIR -2 260 46 1915 127 3 37 chr12 14460021 14460320 -129326135 - AluSx SINE Alu -23 289 1 266 280 52 52 chr12 14460792 14460985 -129325470 + L2 LINE L2 2272 2464 -850 201 152 0 0 chr12 14461566 14461599 -129324856 + (CATCC)n Simple_repeat Simple_repeat 3 35 0 760 309 148 25 chr12 14461599 14462032 -129324423 - L2 LINE L2 -3 3310 2825 1210 238 55 46 chr12 14462062 14462478 -129323977 - L1MC4 LINE L1 -143 7899 7480 962 206 78 0 chr12 14462478 14462696 -129323759 - MIR SINE MIR -12 250 16 846 271 156 19 chr12 14462687 14463097 -129323358 + L2 LINE L2 2844 3309 -4 * 28 29 0 0 chr12 14463111 14463146 -129323309 + AT_rich Low_complexity Low_complexity 1 35 0 4587 138 30 85 chr12 14463399 14463613 -129322842 + L1MA6 LINE L1 5108 5332 -968 2116 125 10 13 chr12 14463613 14463926 -129322529 + AluSx SINE Alu 1 312 0 2308 101 3 0 chr12 14463936 14464233 -129322222 + AluSx SINE Alu 1 298 -14 4587 138 30 85 chr12 14464233 14465260 -129321195 + L1MA6 LINE L1 5341 6300 0 1299 143 17 21 chr12 14465295 14465533 -129320922 + AluSc SINE Alu 2 238 -71 2254 114 0 0 chr12 14465667 14465973 -129320482 - AluY SINE Alu -5 306 1 1085 163 0 11 chr12 14466153 14466331 -129320124 - AluJb SINE Alu 0 312 137 1867 134 39 23 chr12 14467080 14467386 -129319069 + AluSx SINE Alu 1 311 -1 381 216 77 91 chr12 14467386 14467594 -129318861 - L2 LINE L2 -2 3311 3107 1344 33 0 0 chr12 14468451 14468604 -129317851 - L1P LINE L1 -1165 4981 4829 213 39 0 0 chr12 14468604 14468630 -129317825 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 2243 102 0 0 chr12 14468632 14468935 -129317520 - AluY SINE Alu -8 303 1 506 144 0 21 chr12 14468950 14469047 -129317408 + (TTTC)n Simple_repeat Simple_repeat 2 96 0 2594 54 0 0 chr12 14470128 14470425 -129316030 - AluY SINE Alu -14 297 1 303 290 0 0 chr12 14470639 14470732 -129315723 - L1M4 LINE L1 -3852 2294 2202 2446 62 3 50 chr12 14471044 14471364 -129315091 + AluY SINE Alu 1 305 -6 1925 173 0 3 chr12 14472294 14472595 -129313860 + AluSx SINE Alu 3 302 -10 2079 132 0 3 chr12 14472954 14473257 -129313198 - AluSx SINE Alu -10 302 1 267 250 74 9 chr12 14473332 14473440 -129313015 + L2 LINE L2 2175 2289 -1025 487 209 122 0 chr12 14473444 14473588 -129312867 + MIR SINE MIR 17 191 -61 1974 136 16 13 chr12 14473598 14473906 -129312549 + AluJo SINE Alu 1 309 -3 190 279 0 0 chr12 14474076 14474119 -129312336 + L2 LINE L2 2431 2473 -841 22 0 0 0 chr12 14474222 14474244 -129312211 + AT_rich Low_complexity Low_complexity 1 22 0 1735 149 6 43 chr12 14474363 14474686 -129311769 - AluJo SINE Alu -1 311 1 240 269 69 91 chr12 14474852 14475027 -129311428 + MIR SINE MIR 73 243 -19 267 273 73 55 chr12 14475686 14475796 -129310659 - MIR3 SINE MIR -16 192 81 279 314 0 0 chr12 14475866 14475936 -129310519 + polypyrimidine Low_complexity Low_complexity 5 74 0 2439 69 26 3 chr12 14475963 14476269 -129310186 + AluSp SINE Alu 1 313 0 242 276 147 26 chr12 14476909 14477025 -129309430 - L2 LINE L2 -19 3253 3124 189 0 0 0 chr12 14477110 14477131 -129309324 + (A)n Simple_repeat Simple_repeat 1 21 0 686 217 100 48 chr12 14477705 14477828 -129308627 + L1MC5 LINE L1 7586 7701 -260 1692 168 3 30 chr12 14477828 14478132 -129308323 + AluJo SINE Alu 1 296 -16 2392 94 3 0 chr12 14478133 14478442 -129308013 + AluSp SINE Alu 1 310 -3 686 217 100 48 chr12 14478442 14478606 -129307849 + L1MC5 LINE L1 7700 7890 -71 1667 164 0 47 chr12 14478617 14478934 -129307521 - AluJo SINE Alu -10 302 1 325 256 132 25 chr12 14479846 14479967 -129306488 + L2 LINE L2 3137 3270 -2 207 197 13 26 chr12 14480077 14480153 -129306302 + (TA)n Simple_repeat Simple_repeat 2 76 0 2311 91 17 0 chr12 14480232 14480528 -129305927 - AluSx SINE Alu -11 301 1 243 218 36 0 chr12 14481326 14481381 -129305074 + GA-rich Low_complexity Low_complexity 2 58 0 837 234 40 5 chr12 14481422 14481623 -129304832 + MIR SINE MIR 9 216 -46 1696 123 56 15 chr12 14481635 14481903 -129304552 + AluJb SINE Alu 1 279 -33 2243 83 16 22 chr12 14482120 14482432 -129304023 + AluSp SINE Alu 1 310 -3 1752 84 0 17 chr12 14482541 14482778 -129303677 + AluY SINE Alu 79 311 0 1741 177 18 0 chr12 14482997 14483274 -129303181 - AluJo SINE Alu -30 282 1 220 358 93 0 chr12 14484569 14484720 -129301735 - MIR3 SINE MIR -7 201 37 908 132 0 22 chr12 14485164 14485300 -129301155 + FLAM_C SINE Alu 1 133 0 2301 104 0 7 chr12 14486220 14486518 -129299937 - AluSg SINE Alu -14 296 1 2550 72 0 0 chr12 14486830 14487135 -129299320 - AluY SINE Alu -6 305 1 184 210 194 0 chr12 14487227 14487289 -129299166 - L2 LINE L2 0 3272 3199 885 201 0 0 chr12 14488169 14488333 -129298122 - AluJo SINE Alu -2 300 137 2111 122 0 14 chr12 14489863 14490267 -129296188 - AluSx SINE Alu 0 400 1 1286 128 21 0 chr12 14490365 14490552 -129295903 - AluJo SINE Alu -9 303 113 720 117 83 17 chr12 14490722 14490842 -129295613 - AluJo SINE Alu -183 129 2 243 88 0 0 chr12 14490955 14490989 -129295466 + (TCC)n Simple_repeat Simple_repeat 3 36 0 955 86 0 149 chr12 14490989 14491163 -129295292 - AluSg SINE Alu -162 148 1 315 71 0 0 chr12 14492560 14492602 -129293853 + (TG)n Simple_repeat Simple_repeat 1 42 0 207 293 0 40 chr12 14492895 14492970 -129293485 + CT-rich Low_complexity Low_complexity 2 73 0 28 0 0 0 chr12 14493397 14493425 -129293030 + AT_rich Low_complexity Low_complexity 1 28 0 1685 147 33 43 chr12 14493429 14493728 -129292727 - AluJb SINE Alu -16 296 1 1914 150 3 16 chr12 14493823 14494129 -129292326 - AluJo SINE Alu -6 306 5 2415 84 3 7 chr12 14494754 14495064 -129291391 - AluSp SINE Alu -4 309 1 984 319 158 10 chr12 14495067 14495745 -129290710 + L3 LINE CR1 466 1243 -334 259 192 0 0 chr12 14495752 14495804 -129290651 - MIR SINE MIR -4 258 207 2207 106 3 0 chr12 14495804 14496127 -129290328 - AluSq SINE Alu 0 324 1 234 228 208 17 chr12 14496418 14496551 -129289904 + MER5A DNA MER1_type 1 141 -37 2134 123 10 3 chr12 14496678 14496979 -129289476 - AluSx SINE Alu -9 303 1 968 289 59 30 chr12 14496998 14497438 -129289017 - L1MC4a LINE L1 -1799 6289 5837 * 2044 245 66 0 chr12 14497435 14498039 -129288416 - L1MC4a LINE L1 -2591 3835 3192 23 0 0 0 chr12 14498268 14498291 -129288164 + AT_rich Low_complexity Low_complexity 1 23 0 2336 90 0 10 chr12 14498342 14498643 -129287812 - AluSx SINE Alu -14 298 1 2254 211 120 39 chr12 14498727 14499455 -129287000 - L1MCa LINE L1 -3215 3211 2375 1904 148 3 32 chr12 14499455 14499765 -129286690 - AluJb SINE Alu -11 301 1 2254 211 120 39 chr12 14499765 14500029 -129286426 - L1MCa LINE L1 -4051 2375 2134 355 306 91 19 chr12 14500190 14500399 -129286056 - L1M4 LINE L1 -3668 2478 2255 2118 153 79 29 chr12 14501021 14501465 -129284990 - MLT1C LTR MaLR -1 466 1 331 329 82 14 chr12 14501555 14501701 -129284754 - HAL1b LINE L1 -437 911 756 2319 112 0 0 chr12 14502053 14502358 -129284097 - AluSx SINE Alu -7 305 1 2323 229 66 22 chr12 14503031 14503577 -129282878 + MLT1G LTR MaLR 19 588 -2 756 310 49 4 chr12 14503659 14503904 -129282551 + MLT2F LTR ERVL 6 261 -402 2424 53 0 0 chr12 14503986 14504315 -129282140 + AluY SINE Alu 1 311 0 253 206 44 29 chr12 14504683 14504751 -129281704 + MLT2F LTR ERVL 275 343 -320 1723 320 55 14 chr12 14505076 14505820 -129280635 - HERV16 LTR ERVL -2625 2371 1658 372 406 0 0 chr12 14505818 14505978 -129280477 - HERV16 LTR ERVL -3464 1532 1373 * 2025 132 42 73 chr12 14506330 14506756 -129279699 - L1MA8 LINE L1 -91 6200 5788 551 305 79 32 chr12 14506779 14507094 -129279361 - LTR16C LTR ERVL -4 487 158 800 241 105 96 chr12 14507111 14507631 -129278824 - L1MC5 LINE L1 -817 6991 6477 2048 131 144 25 chr12 14507631 14507991 -129278464 - MER57A LTR ERV1 0 403 1 800 241 105 96 chr12 14507991 14508483 -129277972 - L1MC5 LINE L1 -1331 6477 5985 965 213 0 18 chr12 14508483 14508652 -129277803 - FRAM SINE Alu 0 166 1 800 241 105 96 chr12 14508652 14508860 -129277595 - L1MC5 LINE L1 -1823 5985 5780 859 254 24 10 chr12 14508914 14509119 -129277336 - L2 LINE L2 -879 2435 2228 237 226 0 0 chr12 14510321 14510374 -129276081 - L1ME4a LINE L1 -100 6021 5969 26 0 0 0 chr12 14510554 14510580 -129275875 + AT_rich Low_complexity Low_complexity 1 26 0 742 169 32 0 chr12 14510622 14510798 -129275657 + AluJb SINE Alu 156 335 0 22 35 0 0 chr12 14510815 14510844 -129275611 + AT_rich Low_complexity Low_complexity 1 29 0 1140 176 14 32 chr12 14511646 14511862 -129274593 - AluJo SINE Alu -15 297 86 252 344 199 4 chr12 14511925 14512187 -129274268 + L3 LINE CR1 1251 1563 -14 2574 262 81 72 chr12 14514708 14515656 -129270799 + L2 LINE L2 1927 2904 -409 2055 132 0 25 chr12 14515656 14515975 -129270480 + AluSq SINE Alu 1 311 -2 2574 262 81 72 chr12 14515975 14516387 -129270068 + L2 LINE L2 2904 3311 -2 1926 130 32 23 chr12 14516387 14516695 -129269760 - AluSx SINE Alu -1 311 1 1712 152 42 7 chr12 14516697 14516980 -129269475 - AluJo SINE Alu -11 301 9 284 287 218 10 chr12 14517473 14517574 -129268881 + L2 LINE L2 2628 2749 -565 357 310 140 50 chr12 14517635 14517667 -129268788 + L2 LINE L2 2875 2903 -410 2271 101 13 3 chr12 14517667 14517973 -129268482 - AluSx SINE Alu -3 309 1 357 310 140 50 chr12 14517973 14518304 -129268151 + L2 LINE L2 2903 3271 -42 2124 103 4 0 chr12 14518399 14518700 -129267755 - AluSq SINE Alu 0 302 1 1735 166 3 7 chr12 14518994 14519305 -129267150 + AluJb SINE Alu 1 310 0 556 292 65 0 chr12 14519998 14520183 -129266272 + MER117 DNA MER1_type 1 197 0 21 0 0 0 chr12 14520486 14520507 -129265948 + GC_rich Low_complexity Low_complexity 1 21 0 683 247 93 14 chr12 14521705 14522084 -129264371 + MLT1J2 LTR MaLR 1 441 -9 192 40 0 0 chr12 14523325 14523350 -129263105 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 823 224 0 7 chr12 14523350 14523497 -129262958 - FRAM SINE Alu -19 147 2 862 231 32 42 chr12 14524062 14524278 -129262177 - MIR SINE MIR -28 234 21 341 302 19 19 chr12 14524431 14524537 -129261918 + MIR3 SINE MIR 85 190 -18 518 329 91 0 chr12 14525243 14525462 -129260993 - MIR SINE MIR 0 262 24 265 256 98 0 chr12 14525504 14525586 -129260869 - MIR SINE MIR -78 184 95 308 277 64 109 chr12 14525820 14526242 -129260213 - L1M2 LINE L1 -5767 1082 680 328 275 47 47 chr12 14526283 14526432 -129260023 - MIR3 SINE MIR -59 149 1 183 80 0 0 chr12 14526565 14526590 -129259865 + (T)n Simple_repeat Simple_repeat 1 25 0 815 0 0 0 chr12 14527506 14527596 -129258859 + 5S rRNA rRNA 1 90 -31 2254 79 7 0 chr12 14527793 14528113 -129258342 - AluSp SINE Alu 0 322 1 310 202 180 10 chr12 14528157 14528258 -129258197 + MIR SINE MIR 12 144 -64 206 92 46 46 chr12 14528795 14528860 -129257595 + (TATAG)n Simple_repeat Simple_repeat 2 66 0 754 242 47 94 chr12 14529484 14529971 -129256484 - HAL1b LINE L1 -796 552 89 552 228 53 92 chr12 14530012 14530079 -129256376 + MIR SINE MIR 24 92 -170 2342 128 36 28 chr12 14530079 14530439 -129256016 - THE1B LTR MaLR 0 364 2 552 228 53 92 chr12 14530439 14530543 -129255912 + MIR SINE MIR 92 188 -74 2015 134 0 3 chr12 14530543 14530835 -129255620 - AluSx SINE Alu -21 291 1 552 228 53 92 chr12 14530835 14530868 -129255587 + MIR SINE MIR 188 221 -41 536 139 0 12 chr12 14531475 14531561 -129254894 + LTR41 LTR ERVL 3 87 -686 362 223 0 58 chr12 14531607 14531728 -129254727 + LTR41 LTR ERVL 655 768 -5 880 218 92 26 chr12 14531936 14532077 -129254378 + MIR SINE MIR 3 166 -96 189 0 0 0 chr12 14532077 14532098 -129254357 + (TAA)n Simple_repeat Simple_repeat 3 23 0 880 218 92 26 chr12 14532098 14532185 -129254270 + MIR SINE MIR 166 246 -16 865 299 117 27 chr12 14532745 14533156 -129253299 + L3 LINE CR1 789 1236 -341 567 325 66 4 chr12 14533201 14533444 -129253011 - MIR SINE MIR 0 262 5 184 322 206 38 chr12 14533452 14533719 -129252736 + L3 LINE CR1 1239 1550 -27 21 0 0 0 chr12 14533778 14533799 -129252656 + AT_rich Low_complexity Low_complexity 1 21 0 2259 151 52 0 chr12 14533801 14534185 -129252270 - L1MB2 LINE L1 -2 6169 5766 22 56 0 0 chr12 14534636 14534672 -129251783 + AT_rich Low_complexity Low_complexity 1 36 0 5080 162 63 47 chr12 14534721 14535775 -129250680 - MER11C LTR ERVK 0 1071 1 23 0 0 0 chr12 14537714 14537737 -129248718 + AT_rich Low_complexity Low_complexity 1 23 0 1200 246 11 71 chr12 14538275 14538336 -129248119 - L1ME3A LINE L1 -218 5952 5889 2073 130 0 3 chr12 14538336 14538636 -129247819 - AluSx SINE Alu -13 299 1 1200 246 11 71 chr12 14538636 14539026 -129247429 - L1ME3A LINE L1 -281 5889 5528 2585 197 101 30 chr12 14539068 14539734 -129246721 - L1MDa LINE L1 -5826 714 2 208 226 258 11 chr12 14540092 14540185 -129246270 - MIR3 SINE MIR -9 199 84 863 256 131 36 chr12 14540343 14540816 -129245639 + LTR33 LTR ERVL 4 521 0 876 264 40 12 chr12 14541344 14541594 -129244861 - MIR SINE MIR -4 258 2 533 321 47 11 chr12 14544691 14544881 -129241574 + MIR SINE MIR 28 224 -38 1798 314 187 8 chr12 14546450 14547407 -129239048 - L3 LINE CR1 -21 1556 429 1182 246 5 0 chr12 14547468 14547688 -129238767 + MER58A DNA MER1_type 3 223 -1 23 0 0 0 chr12 14549196 14549219 -129237236 + AT_rich Low_complexity Low_complexity 1 23 0 188 320 88 56 chr12 14550231 14550356 -129236099 - L2 LINE L2 -6 3307 3179 214 297 55 33 chr12 14550925 14551016 -129235439 - L2 LINE L2 -8 3305 3213 599 267 52 26 chr12 14551461 14551652 -129234803 + MIR SINE MIR 1 196 -66 351 0 0 0 chr12 14551672 14551711 -129234744 + (TA)n Simple_repeat Simple_repeat 2 40 0 247 202 71 36 chr12 14552420 14552504 -129233951 + MIR3 SINE MIR 97 183 -25 205 282 73 97 chr12 14553537 14553661 -129232794 - L2 LINE L2 -12 3260 3140 230 352 57 0 chr12 14553802 14553890 -129232565 + MIR SINE MIR 45 137 -71 3214 90 26 2 chr12 14553890 14553949 -129232506 - HSMAR2 DNA Mariner -1 1301 1245 2278 113 0 0 chr12 14553949 14554250 -129232205 + AluSg SINE Alu 1 301 -9 3214 90 26 2 chr12 14554250 14554646 -129231809 - HSMAR2 DNA Mariner -57 1245 835 832 157 0 8 chr12 14554660 14554794 -129231661 - FLAM_C SINE Alu 0 133 1 5370 128 7 8 chr12 14554917 14555738 -129230717 - HSMAR2 DNA Mariner -481 821 2 2086 106 6 61 chr12 14556925 14557255 -129229200 - AluSx SINE Alu 0 312 1 376 252 107 19 chr12 14557915 14558018 -129228437 - L2 LINE L2 -3 3269 3158 270 209 116 0 chr12 14558119 14558205 -129228250 - L1ME4a LINE L1 -37 6084 5989 22 35 0 0 chr12 14558743 14558772 -129227683 + AT_rich Low_complexity Low_complexity 1 29 0 7861 18 0 0 chr12 14558772 14559918 -129226537 - L1PA3 LINE L1 -3 6152 5005 8333 29 0 0 chr12 14559918 14560880 -129225575 + L1PA3 LINE L1 4020 4981 -1165 479 310 30 35 chr12 14561689 14561886 -129224569 + MER20 DNA MER1_type 1 196 -23 2369 76 0 19 chr12 14563449 14563764 -129222691 - AluSq SINE Alu -4 309 1 4577 52 16 0 chr12 14565043 14565604 -129220851 - L1PA5 LINE L1 0 6154 5585 220 215 0 77 chr12 14565849 14565914 -129220541 - L2 LINE L2 -8 3264 3205 207 347 71 10 chr12 14566066 14566164 -129220291 + L2 LINE L2 3149 3252 -20 329 318 66 71 chr12 14571162 14571268 -129215187 - MIR3 SINE MIR -6 202 96 2220 95 7 0 chr12 14571268 14571564 -129214891 + AluSp SINE Alu 1 298 -15 329 318 66 71 chr12 14571564 14571655 -129214800 - MIR3 SINE MIR -112 96 6 3819 123 51 47 chr12 14572523 14572918 -129213537 + MER39B LTR ERV1 6 407 -246 1670 154 20 20 chr12 14572918 14573211 -129213244 + AluJo SINE Alu 1 293 -19 3819 123 51 47 chr12 14573211 14573460 -129212995 + MER39B LTR ERV1 407 653 0 238 313 61 61 chr12 14574078 14574225 -129212230 + L2 LINE L2 3122 3268 -4 2348 77 0 16 chr12 14574283 14574596 -129211859 - AluSq SINE Alu -5 308 1 34 42 0 0 chr12 14574621 14574669 -129211786 + AT_rich Low_complexity Low_complexity 1 48 0 202 267 0 0 chr12 14577198 14577243 -129209212 + C-rich Low_complexity Low_complexity 6 50 0 2368 72 0 3 chr12 14577692 14577996 -129208459 + AluY SINE Alu 2 304 -7 2020 115 3 10 chr12 14578305 14578601 -129207854 + AluSx SINE Alu 1 294 -18 247 326 47 31 chr12 14578644 14578837 -129207618 + L2 LINE L2 2887 3082 -190 1002 88 7 0 chr12 14578871 14579008 -129207447 - FLAM_C SINE Alu -5 138 1 311 265 59 52 chr12 14579094 14579230 -129207225 - MER5B DNA MER1_type 0 178 42 356 332 119 5 chr12 14579352 14579545 -129206910 - L3 LINE CR1 -693 884 670 23 0 0 0 chr12 14579804 14579827 -129206628 + AT_rich Low_complexity Low_complexity 1 23 0 186 118 0 0 chr12 14631232 14631266 -129155189 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 833 163 14 14 chr12 14631270 14631417 -129155038 - FRAM SINE Alu -30 146 1 428 339 89 6 chr12 14631563 14631736 -129154719 - MIR SINE MIR -43 219 31 416 250 0 46 chr12 14632301 14632409 -129154046 + MIR SINE MIR 19 121 -87 2383 115 120 5 chr12 14632600 14632984 -129153471 + MSTA LTR MaLR 1 428 0 463 286 193 26 chr12 14633031 14633342 -129153113 - MLT1L LTR MaLR -4 611 249 1257 249 50 69 chr12 14633526 14634047 -129152408 + MLT1J LTR MaLR 1 511 0 513 283 33 7 chr12 14634138 14634290 -129152165 + MIR SINE MIR 32 187 -75 327 178 42 119 chr12 14634357 14634475 -129151980 - MIR3 SINE MIR -10 198 90 2810 70 120 0 chr12 14635290 14635690 -129150765 + LTR7 LTR ERV1 1 448 -2 24034 94 8 13 chr12 14635692 14639525 -129146930 + HERVH LTR ERV1 1 3993 -3720 2343 123 0 6 chr12 14639527 14639860 -129146595 + HERVH LTR ERV1 4488 4818 -2895 520 227 20 27 chr12 14640157 14640307 -129146148 + L1MA10 LINE L1 6186 6334 0 418 276 43 9 chr12 14640788 14640904 -129145551 + MIR SINE MIR 63 182 -80 26 74 0 0 chr12 14640987 14641041 -129145414 + AT_rich Low_complexity Low_complexity 1 54 0 252 252 9 90 chr12 14642238 14642349 -129144106 + L2 LINE L2 2902 3003 -269 406 253 77 82 chr12 14642475 14642657 -129143798 - MIR SINE MIR -69 193 13 * 414 276 257 0 chr12 14642640 14642792 -129143663 + L2 LINE L2 3082 3272 0 262 313 0 0 chr12 14644073 14644156 -129142299 + (TGAA)n Simple_repeat Simple_repeat 3 85 0 352 349 47 6 chr12 14645143 14645315 -129141140 - MIR SINE MIR -82 180 2 204 125 0 0 chr12 14646861 14646893 -129139562 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 194 350 78 17 chr12 14647026 14647206 -129139249 - L2 LINE L2 -234 3038 2848 1796 148 148 34 chr12 14647338 14647722 -129138733 - MSTA LTR MaLR 0 428 1 3061 303 64 43 chr12 14647898 14649512 -129136943 + L2 LINE L2 1318 2964 -350 268 281 1 52 chr12 14649843 14649965 -129136490 - L1ME4a LINE L1 -49 6048 1193 4411 195 32 19 chr12 14650919 14652442 -129134013 + L1MA9 LINE L1 4739 6282 -30 378 195 0 0 chr12 14652499 14652581 -129133874 + (TATG)n Simple_repeat Simple_repeat 1 82 0 263 200 0 0 chr12 14652584 14652639 -129133816 + MER4-int LTR ERV1 1111 1165 -5433 225 154 0 0 chr12 14652639 14652678 -129133777 + (TG)n Simple_repeat Simple_repeat 2 40 0 1094 276 33 63 chr12 14652905 14653386 -129133069 + MER77 LTR ERV1 154 673 -11 390 64 0 0 chr12 14653681 14653728 -129132727 - 5S rRNA rRNA -74 47 1 447 290 83 10 chr12 14653732 14653925 -129132530 - L2 LINE L2 -401 2913 2707 915 257 8 34 chr12 14654660 14654897 -129131558 + MIR SINE MIR 12 242 -20 281 241 35 0 chr12 14655574 14655632 -129130823 + MER91 DNA MER1_type 130 189 -1 21 0 0 0 chr12 14655640 14655661 -129130794 + AT_rich Low_complexity Low_complexity 1 21 0 271 324 27 0 chr12 14655783 14655857 -129130598 + L2 LINE L2 3237 3312 -1 630 216 68 68 chr12 14656457 14656566 -129129889 - MER5A DNA MER1_type -5 184 73 1368 197 61 10 chr12 14656566 14656737 -129129718 - AluJo SINE Alu -2 310 116 201 39 0 0 chr12 14656737 14656763 -129129692 + (TTTAA)n Simple_repeat Simple_repeat 3 28 0 1368 197 61 10 chr12 14656763 14656886 -129129569 - AluJo SINE Alu -196 116 1 630 216 68 68 chr12 14656886 14656952 -129129503 - MER5A DNA MER1_type -115 74 9 2024 131 0 0 chr12 14658069 14658375 -129128080 - AluSx SINE Alu -6 306 1 2324 102 0 0 chr12 14659449 14659744 -129126711 - AluSx SINE Alu -17 295 1 1724 163 72 40 chr12 14660257 14660292 -129126163 + MLT1A1 LTR MaLR 1 33 -332 2350 90 3 0 chr12 14660292 14660582 -129125873 - AluSg SINE Alu -19 291 1 1724 163 72 40 chr12 14660582 14660895 -129125560 + MLT1A1 LTR MaLR 33 360 -5 384 358 101 33 chr12 14661249 14662035 -129124420 + L2 LINE L2 2134 2972 -342 234 245 20 92 chr12 14662126 14662224 -129124231 - MER102a DNA MER1_type -19 311 221 540 299 34 20 chr12 14662490 14662694 -129123761 + LTR67 LTR ERVL 347 553 -4 2216 178 2 65 chr12 14662763 14663257 -129123198 - MLT1D LTR MaLR 0 505 43 366 123 0 0 chr12 14663300 14663357 -129123098 + (TG)n Simple_repeat Simple_repeat 2 58 0 215 244 67 0 chr12 14663403 14663493 -129122962 + (TATG)n Simple_repeat Simple_repeat 4 99 0 454 322 105 45 chr12 14664232 14664751 -129121704 + L2 LINE L2 2730 3268 -4 265 366 69 17 chr12 14665307 14665482 -129120973 - MIR3 SINE MIR -17 191 8 6375 88 11 1 chr12 14666655 14667855 -129118600 + L1PB1 LINE L1 4932 6150 -1 687 276 87 5 chr12 14668007 14668203 -129118252 - MIR SINE MIR -44 218 7 294 179 18 0 chr12 14668411 14668467 -129117988 - LTR67 LTR ERVL 0 557 501 428 217 50 0 chr12 14668620 14668740 -129117715 - L1ME3A LINE L1 -15 6155 6030 908 241 139 8 chr12 14668771 14669277 -129117178 - L1ME3A LINE L1 -581 5581 5023 1384 225 0 29 chr12 14671005 14671312 -129115143 - AluJo SINE Alu -13 299 2 184 271 51 0 chr12 14672889 14672948 -129113507 - L2 LINE L2 -562 2752 2691 180 182 45 68 chr12 14674871 14674915 -129111540 + L2 LINE L2 3258 3300 -13 193 315 54 33 chr12 14675000 14675092 -129111363 - L3 LINE CR1 -174 1403 1310 1621 282 111 26 chr12 14676622 14677492 -129108963 + L2 LINE L2 2208 3152 -161 397 204 50 62 chr12 14677502 14677684 -129108771 - MLT1H LTR MaLR -11 614 439 685 288 132 3 chr12 14677923 14678211 -129108244 + L2 LINE L2 2986 3310 -3 235 311 111 0 chr12 14679423 14679558 -129106897 - MIR SINE MIR -15 247 98 399 323 58 56 chr12 14687350 14687393 -129099062 + L2 LINE L2 2836 2877 -436 1862 174 0 0 chr12 14687393 14687691 -129098764 - AluJo SINE Alu -14 298 1 399 323 58 56 chr12 14687691 14688074 -129098381 + L2 LINE L2 2877 3263 -50 253 338 38 56 chr12 14688782 14689048 -129097407 + L2 LINE L2 2717 2977 -337 1933 154 3 3 chr12 14690715 14691020 -129095435 - AluJb SINE Alu -7 305 1 254 319 14 21 chr12 14692017 14692161 -129094294 + GA-rich Low_complexity Low_complexity 1 143 0 803 234 5 43 chr12 14693397 14693581 -129092874 - AluJ SINE Alu -12 300 124 7303 39 2 5 chr12 14693588 14694468 -129091987 - L1PA5 LINE L1 0 6154 5277 965 121 0 8 chr12 14694469 14694601 -129091854 - AluJ SINE Alu -181 131 1 210 292 198 0 chr12 14696413 14696509 -129089946 - MIR SINE MIR -66 142 28 2144 121 3 3 chr12 14696870 14697177 -129089278 + AluSx SINE Alu 1 307 -5 261 83 0 0 chr12 14697348 14697384 -129089071 + (A)n Simple_repeat Simple_repeat 1 36 0 298 312 34 56 chr12 14697389 14697568 -129088887 + MIR SINE MIR 29 202 -60 265 331 115 13 chr12 14697632 14697789 -129088666 - MIR SINE MIR -70 192 20 511 138 0 0 chr12 14697796 14697876 -129088579 - MER116 DNA Mariner 0 80 1 944 159 0 7 chr12 14698214 14698365 -129088090 - MLT1A1 LTR MaLR -215 150 1 466 238 30 145 chr12 14698365 14698700 -129087755 + HAL1 LINE L1 2086 2458 -49 2659 143 0 36 chr12 14698700 14699147 -129087308 + Tigger2a DNA MER2_type 1 431 -3 311 65 22 0 chr12 14699148 14699194 -129087261 + (TG)n Simple_repeat Simple_repeat 2 48 0 466 238 30 145 chr12 14699194 14699326 -129087129 + HAL1 LINE L1 2457 2501 -6 923 129 0 29 chr12 14699350 14699489 -129086966 - FLAM_C SINE Alu -8 135 1 1799 218 32 13 chr12 14700065 14700441 -129086014 + MSTD LTR MaLR 1 383 -13 1067 240 83 56 chr12 14701926 14702137 -129084318 - MLT1I LTR MaLR 0 409 180 2389 92 0 7 chr12 14702137 14702443 -129084012 - AluY SINE Alu -7 304 1 1067 240 83 56 chr12 14702443 14702627 -129083828 - MLT1I LTR MaLR -229 180 3 407 261 50 0 chr12 14702672 14702791 -129083664 + L2 LINE L2 3148 3272 0 2190 62 0 0 chr12 14702943 14703202 -129083253 + AluY SINE Alu 31 289 -22 332 245 10 20 chr12 14704655 14704753 -129081702 - MER58C DNA MER1_type -13 202 106 403 205 2 105 chr12 14704788 14704857 -129081598 - MER58 DNA MER1_type -122 93 55 2534 66 0 0 chr12 14704857 14705159 -129081296 + AluY SINE Alu 1 302 -9 403 205 2 105 chr12 14705159 14705209 -129081246 - MER58 DNA MER1_type -160 55 1 299 280 80 0 chr12 14706390 14706490 -129079965 - L2 LINE L2 -4 3268 3161 216 231 0 0 chr12 14707484 14707536 -129078919 - L2 LINE L2 0 3313 3262 2132 180 25 0 chr12 14707640 14707996 -129078459 + MLT1A1 LTR MaLR 1 365 0 303 198 74 25 chr12 14707999 14708080 -129078375 + L2 LINE L2 3188 3272 0 1825 121 45 28 chr12 14710189 14710478 -129075977 - AluSx SINE Alu -18 294 1 1369 288 90 42 chr12 14710698 14711333 -129075122 - MER115 DNA AcHobo -22 671 7 295 369 96 14 chr12 14711649 14712015 -129074440 + L2 LINE L2 2351 2746 -568 320 302 75 19 chr12 14712347 14712453 -129074002 + L2 LINE L2 3139 3250 -22 577 165 85 160 chr12 14713176 14713364 -129073091 - MLT2D LTR ERVL 0 414 241 1595 125 16 0 chr12 14714730 14714978 -129071477 - MSTA-int LTR MaLR -1326 254 3 530 128 0 0 chr12 14714980 14715058 -129071397 - MSTA LTR MaLR 0 428 351 2114 133 47 8 chr12 14715671 14716032 -129070423 - THE1C LTR MaLR 0 375 1 26 30 0 0 chr12 14717005 14717038 -129069417 + AT_rich Low_complexity Low_complexity 1 33 0 775 304 77 19 chr12 14717129 14717560 -129068895 - L1MC4a LINE L1 -1723 6085 5630 1365 123 79 98 chr12 14717936 14718213 -129068242 + MER61D LTR ERV1 1 272 -229 185 324 14 14 chr12 14718515 14718586 -129067869 + MIR SINE MIR 23 93 -115 646 116 11 5 chr12 14719066 14719255 -129067200 + AluSg1 SINE Alu 16 296 -14 718 288 175 3 chr12 14719322 14719694 -129066761 - LTR33A LTR ERVL 0 523 88 349 300 6 69 chr12 14720257 14720417 -129066038 - MIR3 SINE MIR -6 202 53 292 236 28 28 chr12 14721055 14721161 -129065294 + GA-rich Low_complexity Low_complexity 3 108 0 1704 162 3 43 chr12 14721677 14721980 -129064475 + AluJb SINE Alu 22 312 0 642 214 34 87 chr12 14725596 14725802 -129060653 + MIR SINE MIR 7 201 -61 251 331 8 15 chr12 14725837 14725967 -129060488 + GA-rich Low_complexity Low_complexity 1 129 0 216 309 12 0 chr12 14725969 14726050 -129060405 + MIR SINE MIR 179 260 -2 376 337 71 42 chr12 14726974 14727380 -129059075 + L2 LINE L2 1851 2268 -1046 2170 55 4 0 chr12 14727391 14727647 -129058808 - AluY SINE Alu -12 299 43 662 226 28 83 chr12 14727792 14728044 -129058411 + MER112 DNA MER1_type 17 254 -6 2790 173 10 89 chr12 14728355 14728951 -129057504 - MLT2B3 LTR ERVL 0 554 6 4827 140 34 4 chr12 14728956 14730142 -129056313 - ERVL-B3 LTR ERVL -6 5758 4505 2322 159 23 5 chr12 14730143 14730539 -129055916 - MER65A LTR ERV1 0 445 43 22 0 0 0 chr12 14730539 14730561 -129055894 + AT_rich Low_complexity Low_complexity 1 22 0 2118 141 3 0 chr12 14730572 14730869 -129055586 - AluSx SINE Alu -14 298 1 362 67 0 33 chr12 14730869 14730929 -129055526 - MER65B LTR ERV1 -473 58 1 9434 138 25 1 chr12 14730929 14732353 -129054102 - ERVL-B3 LTR ERVL -1257 4507 3049 * 16657 166 31 20 chr12 14732350 14735237 -129051218 - ERVL-B3 LTR ERVL -2846 2918 2 2843 190 18 99 chr12 14735262 14735412 -129051043 + MER72 LTR ERV1 11 172 -550 1696 156 4 19 chr12 14735412 14735682 -129050773 - AluJo SINE Alu -40 272 7 2843 190 18 99 chr12 14735682 14736230 -129050225 + MER72 LTR ERV1 172 642 -80 3666 50 0 11 chr12 14736230 14736694 -129049761 - L1PA8 LINE L1 -1 6171 5713 2843 190 18 99 chr12 14736694 14736769 -129049686 + MER72 LTR ERV1 642 722 0 2767 186 22 32 chr12 14736769 14737299 -129049156 - MLT2B3 LTR ERVL -29 525 1 274 217 171 70 chr12 14737300 14737429 -129049026 + L2 LINE L2 3152 3293 -20 1182 127 35 6 chr12 14738078 14738251 -129048204 - AluSx SINE Alu -134 178 1 878 169 43 60 chr12 14738253 14738437 -129048018 + MLT2D LTR ERVL 234 414 0 259 337 71 51 chr12 14738801 14738858 -129047597 + L2 LINE L2 2924 2978 -294 2071 179 42 17 chr12 14738858 14739261 -129047194 - MLT2D LTR ERVL 0 414 2 259 337 71 51 chr12 14739261 14739458 -129046997 + L2 LINE L2 2978 3183 -89 202 331 15 59 chr12 14739764 14739900 -129046555 + MIR SINE MIR 61 190 -72 2089 141 0 0 chr12 14739952 14740249 -129046206 - AluSx SINE Alu -15 297 1 1763 120 108 22 chr12 14740886 14741202 -129045253 - MER57A LTR ERV1 0 403 61 431 88 0 0 chr12 14741332 14741389 -129045066 - MER57A LTR ERV1 -346 57 1 470 294 57 6 chr12 14741511 14741688 -129044767 + MIR SINE MIR 71 256 -6 23 33 0 0 chr12 14742301 14742331 -129044124 + AT_rich Low_complexity Low_complexity 1 30 0 229 242 0 55 chr12 14742490 14742581 -129043874 + G-rich Low_complexity Low_complexity 2 87 0 410 252 0 26 chr12 14743141 14743256 -129043199 - MIR SINE MIR -34 228 117 313 265 28 18 chr12 14745704 14745815 -129040640 + MIR3 SINE MIR 77 189 -19 222 246 58 0 chr12 14745824 14745893 -129040562 + MIR SINE MIR 82 154 -108 2629 69 149 0 chr12 14746202 14746592 -129039863 - LTR7 LTR ERV1 -2 448 1 2310 102 59 13 chr12 14746592 14746965 -129039490 - HERVH LTR ERV1 0 7713 7324 1380 143 19 0 chr12 14746965 14747181 -129039274 - HERVH LTR ERV1 -1894 5819 5600 1883 177 3 0 chr12 14747182 14747499 -129038956 - HERVH LTR ERV1 -2564 5149 4832 973 248 24 24 chr12 14747661 14747951 -129038504 - AluY SINE Alu -11 290 1 1000 165 21 21 chr12 14748528 14748722 -129037733 + MLT1A1 LTR MaLR 10 203 -162 253 344 108 23 chr12 14749041 14749524 -129036931 - L2 LINE L2 -481 2833 2310 182 314 91 58 chr12 14750227 14750348 -129036107 + L3 LINE CR1 967 1091 -486 273 253 44 22 chr12 14750688 14750779 -129035676 - MER117 DNA MER1_type -60 137 45 662 114 9 19 chr12 14754682 14754787 -129031668 - FLAM_A SINE Alu -9 133 30 3119 158 53 23 chr12 14754804 14755380 -129031075 - MER6A DNA MER2_type -19 586 -4 599 75 37 9 chr12 14756665 14756772 -129029683 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 842 139 0 8 chr12 14757359 14757481 -129028974 + AluJb SINE Alu 5 125 -187 634 220 38 13 chr12 14757627 14757786 -129028669 - MIR SINE MIR -23 239 77 262 269 103 32 chr12 14757905 14758061 -129028394 + MIR SINE MIR 29 195 -67 2241 200 82 21 chr12 14758103 14758303 -129028152 + MLT1F LTR MaLR 1 187 -355 2725 90 0 0 chr12 14758303 14758658 -129027797 + THE1A LTR MaLR 1 355 0 2241 200 82 21 chr12 14758658 14758968 -129027487 + MLT1F LTR MaLR 187 542 0 199 314 42 8 chr12 14759368 14759486 -129026969 + L2 LINE L2 2771 2892 -422 180 0 0 0 chr12 14759490 14759510 -129026945 + (TCCCC)n Simple_repeat Simple_repeat 2 21 0 388 336 28 0 chr12 14760508 14760651 -129025804 + MIR SINE MIR 33 179 -83 1438 229 132 24 chr12 14760817 14761272 -129025183 - MER74A LTR ERVL 0 558 55 1185 285 54 29 chr12 14761401 14761920 -129024535 - HAL1 LINE L1 -1245 1262 731 1223 300 115 4 chr12 14761928 14762408 -129024047 - HAL1 LINE L1 -1972 535 3 834 219 61 100 chr12 14762710 14763021 -129023434 + MLT1A1 LTR MaLR 4 302 -63 262 183 267 0 chr12 14763022 14763082 -129023373 - L1M4c LINE L1 -5833 551 476 240 59 0 0 chr12 14763182 14763216 -129023239 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1781 157 7 7 chr12 14763219 14763506 -129022949 - AluSx SINE Alu -25 287 1 2160 101 44 6 chr12 14763540 14763857 -129022598 - L1PA11 LINE L1 0 6174 5846 587 135 0 0 chr12 14763858 14763947 -129022508 + L1MA2 LINE L1 6196 6284 -20 369 275 92 0 chr12 14766428 14766570 -129019885 + MER112 DNA MER1_type 97 251 -9 270 0 0 0 chr12 14766614 14766644 -129019811 + (A)n Simple_repeat Simple_repeat 1 30 0 902 290 87 29 chr12 14766971 14767528 -129018927 - L1MEd LINE L1 -4862 1257 744 820 185 6 13 chr12 14767859 14768016 -129018439 - L1MA4 LINE L1 -9 6291 6136 358 328 22 8 chr12 14768294 14768428 -129018027 - L1MEd LINE L1 -5423 696 561 229 271 103 19 chr12 14768633 14768740 -129017715 - L1MEd LINE L1 -5993 126 11 375 248 168 18 chr12 14768758 14768871 -129017584 + L2 LINE L2 3139 3268 -4 408 330 50 17 chr12 14770313 14770492 -129015963 - MIR SINE MIR -74 188 4 324 83 0 0 chr12 14770743 14770791 -129015664 + (CA)n Simple_repeat Simple_repeat 2 49 0 219 368 56 0 chr12 14771388 14771513 -129014942 - L2 LINE L2 -3 3310 3179 614 218 60 68 chr12 14772183 14772497 -129013958 - LTR45B LTR ERV1 0 594 309 25 0 0 0 chr12 14772592 14772617 -129013838 + AT_rich Low_complexity Low_complexity 1 25 0 201 260 0 40 chr12 14773587 14773637 -129012818 + polypurine Low_complexity Low_complexity 1 48 0 1544 174 0 8 chr12 14773666 14773913 -129012542 - AluSx SINE Alu -65 247 3 528 16 0 0 chr12 14773995 14774056 -129012399 + (TA)n Simple_repeat Simple_repeat 1 61 0 873 137 0 58 chr12 14774060 14774199 -129012256 - FLAM_C SINE Alu -1 132 2 474 285 135 32 chr12 14774779 14775091 -129011364 + L1MEd LINE L1 895 1238 -4881 2416 100 0 3 chr12 14775401 14775711 -129010744 - AluSq SINE Alu -4 309 1 809 240 125 0 chr12 14775717 14775909 -129010546 + MER20 DNA MER1_type 3 218 -1 1103 196 22 48 chr12 14776058 14776329 -129010126 - L1MA10 LINE L1 -18 6316 6053 835 22 0 0 chr12 14776432 14776524 -129009931 - L1PA3 LINE L1 -4 6151 6060 21 71 0 0 chr12 14776701 14776743 -129009712 + AT_rich Low_complexity Low_complexity 1 42 0 1832 167 3 3 chr12 14777254 14777554 -129008901 + AluJo SINE Alu 1 300 -12 218 233 0 0 chr12 14778704 14778747 -129007708 + (TA)n Simple_repeat Simple_repeat 1 43 0 658 260 117 17 chr12 14779180 14779411 -129007044 - MIR SINE MIR -2 260 7 303 288 86 61 chr12 14779528 14779726 -129006729 - L1ME3A LINE L1 -5 6165 5963 1057 246 96 11 chr12 14779827 14780180 -129006275 - L1MC5 LINE L1 -433 7528 7146 1240 233 23 68 chr12 14780189 14780724 -129005731 - L1MC5 LINE L1 -832 6976 6488 1765 217 37 17 chr12 14780804 14781214 -129005241 + LTR52 LTR ERVL 1 418 -3 248 361 26 16 chr12 14781440 14781634 -129004821 - HAL1b LINE L1 -708 640 445 351 305 52 44 chr12 14781825 14782232 -129004223 - HAL1b LINE L1 -901 447 38 333 315 57 47 chr12 14783253 14783637 -129002818 - HAL1b LINE L1 -908 440 53 287 225 47 152 chr12 14784272 14784548 -129001907 - LTR41 LTR ERVL 0 773 527 511 228 76 35 chr12 14784859 14785004 -129001451 - LTR41 LTR ERVL -622 151 1 236 262 19 37 chr12 14785751 14785858 -129000597 - MLT-int LTR MaLR -30 1705 1601 2347 97 3 0 chr12 14785982 14786292 -129000163 - AluSp SINE Alu -2 311 1 300 247 41 0 chr12 14787203 14787313 -128999142 - MLT1F LTR MaLR 0 542 280 2460 38 41 0 chr12 14788847 14789137 -128997318 - AluY SINE Alu -9 302 1 286 310 69 0 chr12 14789728 14789844 -128996611 + L2 LINE L2 3136 3259 -13 767 239 45 0 chr12 14790983 14791159 -128995296 - MIR SINE MIR -10 252 69 205 179 0 0 chr12 14791185 14791224 -128995231 + L2 LINE L2 3275 3313 0 1078 223 50 88 chr12 14791244 14791620 -128994835 - MLT1A1 LTR MaLR 0 365 4 190 229 0 0 chr12 14792667 14792702 -128993753 - L2 LINE L2 -3 3310 3276 3289 131 3 74 chr12 14792861 14793495 -128992960 - L1MA5 LINE L1 0 6300 5712 231 392 150 7 chr12 14793605 14793758 -128992697 - L2 LINE L2 -54 3218 3044 569 296 47 6 chr12 14793775 14793944 -128992511 - MIR3 SINE MIR -13 195 20 795 112 0 0 chr12 14794624 14794740 -128991715 - L1MA3 LINE L1 -21 6284 6169 195 236 139 0 chr12 14796099 14796171 -128990284 + MIR3 SINE MIR 104 185 -23 665 258 167 65 chr12 14797607 14797991 -128988464 + MLT1J1 LTR MaLR 53 475 -36 246 330 70 0 chr12 14798567 14798682 -128987773 - MIR3 SINE MIR -48 160 38 2579 139 131 36 chr12 14798713 14799188 -128987267 - MLT2B1 LTR ERVL 0 520 1 555 209 6 52 chr12 14799338 14799510 -128986945 - LTR7 LTR ERV1 -17 433 270 1771 196 115 79 chr12 14799720 14800301 -128986154 - MLT1E2 LTR MaLR -24 602 1 423 0 0 0 chr12 14801093 14801140 -128985315 + (TG)n Simple_repeat Simple_repeat 1 47 0 393 223 29 0 chr12 14802753 14802892 -128983563 + CT-rich Low_complexity Low_complexity 2 144 0 382 345 103 30 chr12 14802900 14803541 -128982914 + L2 LINE L2 2554 3251 -21 223 282 29 94 chr12 14804035 14804205 -128982250 - MIR SINE MIR -1 261 103 307 188 130 0 chr12 14804543 14804612 -128981843 + L2 LINE L2 3200 3277 -36 806 219 97 25 chr12 14804775 14805357 -128981098 - MER4C LTR ERV1 0 695 1 465 119 0 60 chr12 14805396 14805411 -128981044 + MER96 DNA MER1_type? 1 15 -160 2623 178 78 98 chr12 14805411 14806153 -128980302 + LTR8A LTR ERV1 1 727 0 465 119 0 60 chr12 14806153 14806221 -128980234 + MER96 DNA MER1_type? 15 79 -96 1247 207 54 34 chr12 14806458 14806811 -128979644 - L1MD2 LINE L1 0 6359 6000 399 350 34 25 chr12 14807056 14807293 -128979162 + MARNA DNA Mariner 317 555 -31 2392 97 3 0 chr12 14807431 14807731 -128978724 - AluSx SINE Alu -10 302 2 776 288 56 84 chr12 14808146 14808608 -128977847 + MER115 DNA AcHobo 1 449 -244 299 250 39 90 chr12 14808949 14809063 -128977392 - MER5B DNA MER1_type -2 176 71 1053 166 17 0 chr12 14809063 14809238 -128977217 - MER5B DNA MER1_type 0 178 1 299 250 39 90 chr12 14809238 14809279 -128977176 - MER5B DNA MER1_type -107 71 29 902 324 141 34 chr12 14810288 14811219 -128975236 + L3 LINE CR1 198 1227 -350 3386 115 6 12 chr12 14811318 14811525 -128974930 + MER1A DNA MER1_type 53 260 -2442 2230 104 16 3 chr12 14811525 14811832 -128974623 + AluSx SINE Alu 1 311 -1 3386 115 6 12 chr12 14811832 14812104 -128974351 + MER1A DNA MER1_type 260 529 0 197 32 0 32 chr12 14813874 14813905 -128972550 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 44049 31 21 1 chr12 14813906 14819932 -128966523 - L1PA3 LINE L1 -4 6151 4 8240 17 0 0 chr12 14819934 14820982 -128965473 + L1PA2 LINE L1 5134 6181 0 14966 27 1 0 chr12 14820984 14822711 -128963744 - L1P LINE L1 -999 5147 3420 1941 162 0 0 chr12 14822713 14823009 -128963446 - AluSx SINE Alu -16 296 1 2056 193 56 40 chr12 14823071 14823568 -128962887 + MLT1D LTR MaLR 1 505 0 468 274 110 18 chr12 14823725 14823944 -128962511 + MIR SINE MIR 23 261 -1 325 294 184 0 chr12 14824037 14824173 -128962282 - MIR SINE MIR 0 262 102 2102 70 0 0 chr12 14824177 14824435 -128962020 + AluY SINE Alu 1 258 -53 2462 138 45 8 chr12 14824435 14824835 -128961620 + MSTA LTR MaLR 14 428 0 200 236 77 4 chr12 14824836 14824907 -128961548 - MIR SINE MIR -112 96 32 2160 122 7 0 chr12 14825775 14826078 -128960377 - AluSx SINE Alu -7 305 1 301 356 5 16 chr12 14827932 14828120 -128958335 + L2 LINE L2 2560 2745 -569 205 320 27 13 chr12 14828204 14828279 -128958176 - MER5A DNA MER1_type -85 104 29 22 0 0 0 chr12 14828635 14828657 -128957798 + AT_rich Low_complexity Low_complexity 1 22 0 190 300 40 0 chr12 14829195 14829245 -128957210 + L2 LINE L2 3196 3247 -25 28 48 0 0 chr12 14829344 14829386 -128957069 + AT_rich Low_complexity Low_complexity 1 42 0 1817 211 34 5 chr12 14829713 14830101 -128956354 - MLT1C LTR MaLR 0 467 69 2194 125 3 3 chr12 14830101 14830406 -128956049 - THE1B LTR MaLR 0 364 60 25 31 0 0 chr12 14831703 14831735 -128954720 + AT_rich Low_complexity Low_complexity 1 32 0 16664 177 30 20 chr12 14831942 14832070 -128954385 + L1MA4 LINE L1 6 131 -6351 1627 175 39 29 chr12 14832070 14832378 -128954077 + AluJo SINE Alu 1 311 -1 16664 177 30 20 chr12 14832378 14838549 -128947906 + L1MA4 LINE L1 131 6477 -5 656 297 131 50 chr12 14838606 14839027 -128947428 - L2 LINE L2 -669 2645 2191 333 329 98 14 chr12 14839985 14840128 -128946327 + MER5A DNA MER1_type 9 163 -26 367 269 199 13 chr12 14840170 14840326 -128946129 - MER5A DNA MER1_type -4 185 1 180 0 0 0 chr12 14840753 14840773 -128945682 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2514 60 0 25 chr12 14841885 14842199 -128944256 + AluY SINE Alu 1 306 -5 343 68 0 0 chr12 14842232 14842276 -128944179 + MADE1 DNA Mariner 35 78 -2 276 297 62 31 chr12 14842511 14842639 -128943816 + MIR SINE MIR 126 257 -5 836 269 149 36 chr12 14843192 14843440 -128943015 + L2 LINE L2 2851 3070 -243 320 0 25 0 chr12 14843440 14843480 -128942975 + (TG)n Simple_repeat Simple_repeat 1 41 0 836 269 149 36 chr12 14843480 14843647 -128942808 + L2 LINE L2 3070 3313 0 377 245 58 36 chr12 14843653 14843792 -128942663 - MIR3 SINE MIR -63 145 4 397 330 154 0 chr12 14843919 14844101 -128942354 + L2 LINE L2 2855 3064 -249 1950 131 125 12 chr12 14844101 14844429 -128942026 + MLT1A1 LTR MaLR 1 365 0 302 365 43 26 chr12 14845341 14845456 -128940999 - L2 LINE L2 -17 3255 3139 1587 75 0 75 chr12 14845991 14846230 -128940225 + AluSp SINE Alu 91 311 -2 223 352 14 28 chr12 14846495 14846566 -128939889 - L2 LINE L2 -18 3254 3185 250 363 48 8 chr12 14847099 14847223 -128939232 + L3 LINE CR1 1407 1535 -42 195 316 38 13 chr12 14847871 14847950 -128938505 + L3b LINE CR1 1353 1433 -150 536 303 65 22 chr12 14849270 14849522 -128936933 + MIR SINE MIR 3 262 0 210 200 15 31 chr12 14849770 14849835 -128936620 + (TG)n Simple_repeat Simple_repeat 2 65 0 201 176 0 0 chr12 14849830 14849864 -128936591 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 * 1589 209 103 32 chr12 14850341 14850777 -128935678 + MLT1C LTR MaLR 1 467 0 1373 201 14 7 chr12 14852009 14852288 -128934167 - L1PA16 LINE L1 -4 6162 5882 509 341 130 24 chr12 14852288 14852739 -128933716 + L2 LINE L2 2097 2599 -715 1014 211 82 5 chr12 14852896 14853104 -128933351 + MER58A DNA MER1_type 1 224 0 320 349 0 0 chr12 14853445 14853554 -128932901 + L2 LINE L2 2624 2732 -582 390 306 150 60 chr12 14853745 14854111 -128932344 + L2 LINE L2 2874 3272 0 267 378 30 43 chr12 14854394 14854624 -128931831 + L2 LINE L2 2819 3045 -227 306 0 0 0 chr12 14854687 14854721 -128931734 + (T)n Simple_repeat Simple_repeat 1 34 0 222 213 115 33 chr12 14854755 14854816 -128931639 + L2 LINE L2 3168 3233 -39 707 206 0 32 chr12 14854931 14855057 -128931398 + AluJo SINE Alu 5 126 -186 26 30 0 0 chr12 14855057 14855090 -128931365 + AT_rich Low_complexity Low_complexity 1 33 0 2078 65 0 0 chr12 14855118 14855364 -128931091 - L1PA7 LINE L1 -5 6149 5904 1091 166 5 26 chr12 14855364 14855557 -128930898 + AluJo SINE Alu 116 304 -8 296 258 67 0 chr12 14856662 14856751 -128929704 + L1ME4a LINE L1 5518 5612 -509 295 350 78 16 chr12 14856838 14857095 -128929360 + MLT1K LTR MaLR 81 353 -235 1117 228 176 24 chr12 14857123 14857583 -128928872 + L1ME4a LINE L1 5589 6118 -3 253 221 0 23 chr12 14858286 14858372 -128928083 + CT-rich Low_complexity Low_complexity 1 84 0 384 294 96 37 chr12 14859719 14859937 -128926518 - MIR SINE MIR -8 254 24 724 279 77 0 chr12 14860189 14860411 -128926044 + MIR SINE MIR 2 240 -22 991 279 110 7 chr12 14860445 14860753 -128925702 + L1ME3A LINE L1 5537 5876 -294 8177 121 10 43 chr12 14860764 14862100 -128924355 - THE1C-int LTR MaLR -286 1294 3 2065 153 38 19 chr12 14862102 14862468 -128923987 - THE1C LTR MaLR 0 375 3 2988 194 36 23 chr12 14862572 14863184 -128923271 + MLT1E3 LTR MaLR 2 621 -3 691 76 0 11 chr12 14863209 14863301 -128923154 - 5S rRNA rRNA -30 91 1 1487 222 48 52 chr12 14864397 14864919 -128921536 - L1MC4 LINE L1 -25 8017 7498 266 275 147 18 chr12 14864995 14865104 -128921351 - L2 LINE L2 -213 3059 2937 291 247 22 0 chr12 14865286 14865375 -128921080 - L1ME LINE L1 -325 5796 5706 208 158 26 0 chr12 14865389 14865427 -128921028 - L2 LINE L2 -20 3252 3214 * 241 320 99 33 chr12 14865426 14865607 -128920848 - MIR SINE MIR -20 242 50 181 200 29 57 chr12 14865837 14865907 -128920548 - L2 LINE L2 -524 2790 2723 961 244 133 4 chr12 14865980 14866250 -128920205 - L1MC4 LINE L1 -531 7511 7207 6272 167 44 32 chr12 14866344 14866707 -128919748 - L1MB1 LINE L1 -1 6167 5810 1946 102 113 0 chr12 14866707 14866982 -128919473 - AluSq SINE Alu -7 306 1 6272 167 44 32 chr12 14866982 14868811 -128917644 - L1MB1 LINE L1 -358 5810 3951 2050 237 70 15 chr12 14868817 14869413 -128917042 - L1MC4a LINE L1 -840 6968 6340 2035 189 88 16 chr12 14869426 14869912 -128916543 - L1ME2 LINE L1 -34 6130 5610 297 219 0 16 chr12 14869912 14869976 -128916479 + MLT1G1 LTR MaLR 1 63 -532 243 353 210 8 chr12 14870167 14870666 -128915789 + L2 LINE L2 2263 2862 -452 237 342 99 30 chr12 14870761 14871024 -128915431 + L2 LINE L2 3021 3301 -12 446 349 109 16 chr12 14871467 14871897 -128914558 + L2 LINE L2 2327 2796 -518 190 256 0 128 chr12 14872061 14872217 -128914238 + L2 LINE L2 2924 3059 -213 375 337 85 67 chr12 14873083 14873531 -128912924 + L2 LINE L2 2810 3265 -7 23 33 0 0 chr12 14874427 14874457 -128911998 + AT_rich Low_complexity Low_complexity 1 30 0 980 108 2 6 chr12 14875001 14875170 -128911285 - THE1C LTR MaLR -189 166 1 378 0 0 0 chr12 14875849 14875891 -128910564 + (TG)n Simple_repeat Simple_repeat 2 43 0 2471 97 44 36 chr12 14876160 14876521 -128909934 + THE1B LTR MaLR 1 364 0 201 329 12 0 chr12 14877311 14877393 -128909062 + (CACCAT)n Simple_repeat Simple_repeat 1 83 0 1742 189 96 23 chr12 14878094 14878490 -128907965 + MLT1C LTR MaLR 1 425 -42 1946 165 0 10 chr12 14879568 14879877 -128906578 - AluJo SINE Alu -6 306 1 308 205 12 72 chr12 14880544 14880627 -128905828 - L2 LINE L2 -10 3303 3226 21 36 0 0 chr12 14881446 14881474 -128904981 + AT_rich Low_complexity Low_complexity 1 28 0 326 286 109 26 chr12 14881632 14881898 -128904557 + L1ME3A LINE L1 2220 2507 -3639 770 118 0 0 chr12 14881974 14882076 -128904379 - U6 snRNA snRNA -5 102 1 504 293 100 20 chr12 14882082 14882482 -128903973 + L1ME3A LINE L1 2539 2970 -3176 476 232 61 67 chr12 14882483 14882647 -128903808 - MER63A DNA MER1_type -5 205 43 2983 284 100 14 chr12 14882682 14884287 -128902168 + L1ME3A LINE L1 2962 4704 -1442 329 259 84 23 chr12 14884304 14884435 -128902020 + L1ME3A LINE L1 4869 5007 -1139 1043 248 104 60 chr12 14884459 14885196 -128901259 + L1ME3A LINE L1 5174 5949 -221 447 294 247 9 chr12 14885710 14886030 -128900425 - L2 LINE L2 -6 3266 2871 187 295 49 16 chr12 14886213 14886274 -128900181 - L2 LINE L2 -10 3262 3200 480 253 34 13 chr12 14886837 14886989 -128899466 + MIR SINE MIR 38 192 -62 1843 117 19 0 chr12 14888561 14888817 -128897638 + AluSq SINE Alu 1 261 -52 288 53 0 0 chr12 14888831 14888869 -128897586 + (TG)n Simple_repeat Simple_repeat 1 38 0 2341 93 0 7 chr12 14889276 14889578 -128896877 - AluSc SINE Alu -9 300 1 213 275 43 0 chr12 14890144 14890213 -128896242 + MIR SINE MIR 104 175 -87 184 290 0 32 chr12 14890193 14890255 -128896200 + L2 LINE L2 3242 3301 -12 * 235 247 52 13 chr12 14890614 14890691 -128895764 - L2 LINE L2 -1 3312 3233 348 64 0 0 chr12 14891501 14891548 -128894907 + (TG)n Simple_repeat Simple_repeat 2 48 0 312 242 167 25 chr12 14891896 14892016 -128894439 - MIR SINE MIR -55 153 17 683 228 142 27 chr12 14892213 14892432 -128894023 + MIR SINE MIR 2 245 -17 318 233 116 0 chr12 14893588 14893674 -128892781 - MIR SINE MIR -76 186 91 200 209 134 15 chr12 14894529 14894596 -128891859 + L2 LINE L2 2889 2963 -350 262 226 220 30 chr12 14895335 14895503 -128890952 - MIR SINE MIR -62 200 1 279 315 72 55 chr12 14895513 14895694 -128890761 - L2 LINE L2 -21 3251 3068 1195 204 68 34 chr12 14896734 14897028 -128889427 + MER93b LTR ERV1 1 304 -69 194 184 92 53 chr12 14897236 14897312 -128889143 - MER5A DNA MER1_type -1 188 110 190 279 29 0 chr12 14897256 14897324 -128889131 + MER5A DNA MER1_type 33 102 -87 * 311 299 68 0 chr12 14899340 14899457 -128886998 + L1M4 LINE L1 4062 4186 -1960 899 139 0 22 chr12 14899457 14899594 -128886861 + FLAM_C SINE Alu 1 134 -9 2236 264 59 53 chr12 14899594 14899840 -128886615 + L1M4 LINE L1 4176 4419 -1727 1487 109 33 0 chr12 14899840 14900050 -128886405 + AluSg/x SINE Alu 83 299 -11 2236 264 59 53 chr12 14900050 14901015 -128885440 + L1M4 LINE L1 4419 5395 -751 212 311 104 9 chr12 14901475 14901581 -128884874 - L2 LINE L2 -8 3264 3149 2442 110 52 25 chr12 14902472 14902837 -128883618 - THE1C LTR MaLR 0 375 1 755 73 257 0 chr12 14902927 14903036 -128883419 - MER85 DNA T2_type 0 139 3 1985 140 13 13 chr12 14904888 14905195 -128881260 - AluSx SINE Alu -5 307 1 3065 222 115 48 chr12 14905493 14906650 -128879805 + L1MC4 LINE L1 6808 8042 0 593 213 148 35 chr12 14906830 14907032 -128879423 - MIR SINE MIR -11 251 27 2269 115 0 0 chr12 14907034 14907330 -128879125 - AluSx SINE Alu -16 296 1 634 265 18 84 chr12 14908075 14908254 -128878201 + MIR SINE MIR 1 166 -63 1852 175 83 35 chr12 14910456 14910804 -128875651 + MLT1A1 LTR MaLR 1 365 0 1348 148 49 9 chr12 14911156 14911379 -128875076 + AluSg/x SINE Alu 79 310 0 1377 168 0 50 chr12 14911603 14911841 -128874614 + Tigger5 DNA MER2_type 1 226 -2097 * 2803 152 50 12 chr12 14911824 14912304 -128874151 + Tigger5 DNA MER2_type 1826 2323 0 365 152 65 54 chr12 14912797 14912889 -128873566 + MLT1I LTR MaLR 68 160 -249 232 286 24 0 chr12 14912958 14913042 -128873413 + MLT1J2 LTR MaLR 365 450 0 188 228 130 54 chr12 14913081 14913173 -128873282 + L2 LINE L2 2685 2783 -531 6955 119 30 8 chr12 14915635 14917372 -128869083 - L1MA1 LINE L1 -4 6298 4525 446 272 56 44 chr12 14917489 14917669 -128868786 - MIR3 SINE MIR -23 185 4 827 206 120 5 chr12 14917818 14918002 -128868453 + MER3 DNA MER1_type 1 205 -4 304 289 48 0 chr12 14918491 14918574 -128867881 - L2 LINE L2 -1 3271 3185 1436 235 77 14 chr12 14919065 14919494 -128866961 - HsTC2 DNA Tc2 0 1900 1269 1336 267 42 25 chr12 14919507 14919987 -128866468 - HsTC2 DNA Tc2 -1410 488 1 302 244 199 15 chr12 14920381 14920512 -128865943 - L2 LINE L2 0 3313 3159 1111 262 93 21 chr12 14922451 14922532 -128863923 + MLT1C LTR MaLR 17 91 -376 1969 56 0 0 chr12 14922532 14922763 -128863692 + AluY SINE Alu 70 300 -11 1111 262 93 21 chr12 14922763 14923101 -128863354 + MLT1C LTR MaLR 91 466 -1 1462 230 75 107 chr12 14923624 14924184 -128862271 - MLT1F1 LTR MaLR 0 567 1 630 294 32 37 chr12 14924408 14924626 -128861829 + MIR SINE MIR 38 254 -8 497 352 65 51 chr12 14927261 14927646 -128858809 - L2 LINE L2 -446 2868 2473 935 174 26 62 chr12 14927646 14927841 -128858614 + MER5A DNA MER1_type 1 188 -1 497 352 65 51 chr12 14927841 14927961 -128858494 - L2 LINE L2 -841 2473 2356 652 202 0 0 chr12 14929432 14929541 -128856914 + AluJb SINE Alu 154 262 -50 359 258 23 154 chr12 14930137 14930358 -128856097 + MIR SINE MIR 59 250 -12 766 189 112 39 chr12 14930372 14930578 -128855877 + MIR SINE MIR 12 232 -30 256 289 44 59 chr12 14930775 14930910 -128855545 + MER5A DNA MER1_type 56 188 -1 257 328 63 32 chr12 14931361 14931550 -128854905 - L2 LINE L2 -527 2787 2593 2254 304 128 27 chr12 14931705 14933424 -128853031 - L2 LINE L2 -6 3307 1413 11186 194 38 25 chr12 14933441 14934380 -128852075 - L1MB3 LINE L1 -6 6410 5485 640 162 36 0 chr12 14934380 14934491 -128851964 - L1MC1 LINE L1 0 6333 6219 11186 194 38 25 chr12 14934491 14938842 -128847613 - L1MB3 LINE L1 -931 5485 976 2122 99 72 77 chr12 14938842 14939217 -128847238 + THE1C LTR MaLR 3 375 0 11186 194 38 25 chr12 14939217 14939725 -128846730 - L1MB3 LINE L1 -5440 976 476 240 59 0 0 chr12 14939825 14939859 -128846596 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1799 161 7 3 chr12 14939862 14940148 -128846307 - AluSx SINE Alu -25 287 1 14802 153 19 3 chr12 14940182 14943365 -128843090 - L1PA11 LINE L1 0 6174 2938 2584 183 62 7 chr12 14943365 14943814 -128842641 - L1MB3 LINE L1 -5909 475 2 740 175 15 44 chr12 14943822 14943959 -128842496 - FLAM_A SINE Alu 0 133 1 486 275 68 48 chr12 14944058 14944265 -128842190 - MIR SINE MIR 0 262 52 887 289 135 33 chr12 14944279 14944760 -128841695 - L2 LINE L2 -1988 1326 797 40 0 0 0 chr12 14945391 14945431 -128841024 + AT_rich Low_complexity Low_complexity 1 40 0 701 262 43 19 chr12 14945588 14945798 -128840657 + MER112 DNA MER1_type 6 220 -40 288 332 47 25 chr12 14946931 14947166 -128839289 - L2 LINE L2 -888 2426 2187 320 189 0 103 chr12 14948637 14948995 -128837460 + GA-rich Low_complexity Low_complexity 1 321 0 291 351 24 6 chr12 14948689 14948857 -128837598 + (GAATG)n Simple_repeat Simple_repeat 1 171 0 * 349 386 0 6 chr12 14948850 14949098 -128837357 + (GAGTG)n Simple_repeat Simple_repeat 1 246 0 414 299 0 17 chr12 14949248 14949365 -128837090 - L2 LINE L2 -1 3312 3198 540 308 48 0 chr12 14949374 14949582 -128836873 + MIR SINE MIR 40 257 -5 445 308 99 19 chr12 14950136 14950347 -128836108 + MIR SINE MIR 25 252 -10 2234 105 7 0 chr12 14950349 14950653 -128835802 - AluSx SINE Alu -1 311 6 885 247 135 29 chr12 14951624 14952009 -128834446 + L2 LINE L2 2887 3312 -1 181 270 70 30 chr12 14952205 14952305 -128834150 - L2 LINE L2 -190 3123 3020 207 298 142 52 chr12 14952502 14952811 -128833644 - L2 LINE L2 -557 2757 2421 184 286 13 26 chr12 14953066 14953143 -128833312 + MIR SINE MIR 88 163 -99 180 0 0 0 chr12 14954406 14954426 -128832029 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 384 254 91 48 chr12 14955497 14955662 -128830793 + MIR SINE MIR 41 212 -50 480 190 15 102 chr12 14956055 14956192 -128830263 + L2 LINE L2 3189 3313 0 31 58 0 0 chr12 14956464 14956516 -128829939 + AT_rich Low_complexity Low_complexity 1 52 0 472 256 100 0 chr12 14957235 14957395 -128829060 - LTR50 LTR ERVL -619 176 1 394 326 11 45 chr12 14957788 14957966 -128828489 + MIR SINE MIR 81 252 -10 372 281 195 32 chr12 14958284 14958497 -128827958 + MIR SINE MIR 9 259 -3 592 214 89 36 chr12 14959948 14960116 -128826339 + MER5B DNA MER1_type 2 178 0 1706 174 10 3 chr12 14960836 14961166 -128825289 + AluJb SINE Alu 5 312 0 868 215 92 33 chr12 14961958 14962349 -128824106 + L1MC5 LINE L1 7393 7806 -155 250 254 0 0 chr12 14963305 14963360 -128823095 + (CA)n Simple_repeat Simple_repeat 2 56 0 6381 266 140 23 chr12 14964841 14967757 -128818698 + L2 LINE L2 41 3296 -17 279 133 0 0 chr12 14970233 14970278 -128816177 + (TATG)n Simple_repeat Simple_repeat 4 48 0 433 211 88 88 chr12 14970380 14970527 -128815928 + L2 LINE L2 3166 3312 -1 213 227 288 38 chr12 14970601 14970733 -128815722 + MIR SINE MIR 84 248 -14 243 200 75 50 chr12 14970989 14971069 -128815386 + MIR SINE MIR 100 181 -81 204 355 0 16 chr12 14972626 14972688 -128813767 - L2 LINE L2 -207 3065 3005 765 322 70 23 chr12 14973224 14973609 -128812846 - L3b LINE CR1 -78 1505 1103 195 254 36 18 chr12 14974174 14974229 -128812226 - L2 LINE L2 -16 3256 3201 425 235 22 44 chr12 14974513 14974649 -128811806 - MIR SINE MIR 0 262 130 302 252 148 0 chr12 14975602 14975737 -128810718 + L1ME LINE L1 5672 5826 -295 468 285 32 19 chr12 14976274 14976432 -128810023 - MER91B DNA MER1_type -12 178 19 245 344 16 62 chr12 14977767 14977895 -128808560 + L2 LINE L2 3147 3268 -4 1868 153 18 49 chr12 14978057 14978444 -128808011 + THE1C LTR MaLR 1 375 0 705 302 133 7 chr12 14978501 14978802 -128807653 - MLT1G1 LTR MaLR -2 593 255 415 221 14 114 chr12 14978814 14978954 -128807501 - MLT1G1 LTR MaLR -421 134 9 2189 113 3 3 chr12 14979459 14979752 -128806703 + AluSg SINE Alu 1 293 -17 2179 112 0 0 chr12 14980363 14980658 -128805797 + AluSx SINE Alu 1 295 -17 423 0 0 0 chr12 14984642 14984689 -128801766 + (TA)n Simple_repeat Simple_repeat 2 48 0 415 245 64 28 chr12 14984727 14984870 -128801585 + MIR3 SINE MIR 12 162 -46 246 233 83 0 chr12 14984929 14984989 -128801466 + L2 LINE L2 3244 3308 -5 242 293 121 7 chr12 14985623 14985763 -128800692 + MER5B DNA MER1_type 4 159 -19 27 49 0 0 chr12 14985953 14985994 -128800461 + AT_rich Low_complexity Low_complexity 1 41 0 3298 153 23 28 chr12 14986045 14986278 -128800177 - MER6A DNA MER2_type -260 605 372 2440 90 3 0 chr12 14986278 14986590 -128799865 + AluSp SINE Alu 1 313 0 3298 153 23 28 chr12 14986590 14986964 -128799491 - MER6A DNA MER2_type -493 372 1 23 68 0 0 chr12 14988857 14988901 -128797554 + AT_rich Low_complexity Low_complexity 1 44 0 198 0 0 0 chr12 14988950 14988972 -128797483 + (TG)n Simple_repeat Simple_repeat 1 22 0 338 61 20 0 chr12 14989016 14989065 -128797390 + (TG)n Simple_repeat Simple_repeat 1 50 0 391 190 0 38 chr12 14989956 14990035 -128796420 - MIR SINE MIR 0 262 187 217 341 23 23 chr12 14991042 14991130 -128795325 + MIR SINE MIR 4 91 -171 208 200 158 84 chr12 14991267 14991362 -128795093 + MIR SINE MIR 149 250 -12 254 306 157 39 chr12 14991734 14992071 -128794384 - L2 LINE L2 -964 2350 1974 1737 177 92 13 chr12 14992140 14992530 -128793925 - MSTB1 LTR MaLR 0 432 12 690 244 29 80 chr12 14995503 14995567 -128790888 - MIR SINE MIR 0 262 196 903 119 0 182 chr12 14995567 14995803 -128790652 - 7SK RNA RNA 0 193 1 690 244 29 80 chr12 14995803 14996013 -128790442 - MIR SINE MIR -66 196 2 305 229 42 10 chr12 14997543 14997639 -128788816 + L1MA9 LINE L1 6174 6272 -40 192 307 13 40 chr12 14997741 14997816 -128788639 - MIR SINE MIR -57 151 79 324 307 175 15 chr12 14997957 14998094 -128788361 + MIR3 SINE MIR 4 162 -46 455 324 88 0 chr12 14998607 14998777 -128787678 + MIR3 SINE MIR 20 204 -4 441 0 0 0 chr12 14998860 14998909 -128787546 + (CA)n Simple_repeat Simple_repeat 2 50 0 197 214 170 71 chr12 14999429 14999541 -128786914 - MIR SINE MIR -71 191 69 651 222 12 12 chr12 14999996 15000158 -128786297 - MARNA DNA Mariner -62 524 363 384 213 25 31 chr12 15000229 15000389 -128786066 + CT-rich Low_complexity Low_complexity 2 160 0 207 281 126 37 chr12 15000710 15000845 -128785610 + L3 LINE CR1 1068 1214 -363 2315 163 70 9 chr12 15000941 15001371 -128785084 - LTR32 LTR ERVL -1 470 15 661 299 74 66 chr12 15001434 15001812 -128784643 + L3 LINE CR1 1193 1573 -4 535 291 11 28 chr12 15002775 15002954 -128783501 - MIR SINE MIR -10 252 77 1838 97 8 0 chr12 15002985 15003244 -128783211 - L1PA10 LINE L1 -3 6165 5905 23 0 0 0 chr12 15003254 15003277 -128783178 + AT_rich Low_complexity Low_complexity 1 23 0 648 267 141 0 chr12 15004098 15004289 -128782166 + MIR SINE MIR 35 252 -10 280 349 13 0 chr12 15004427 15004576 -128781879 - MER103 DNA DNA -14 152 2 1860 184 0 7 chr12 15004963 15005268 -128781187 - AluJo SINE Alu -9 303 1 241 284 60 35 chr12 15005790 15005906 -128780549 + L2 LINE L2 2623 2741 -573 286 268 54 18 chr12 15006283 15006395 -128780060 + L2 LINE L2 3196 3311 -2 364 298 57 8 chr12 15007063 15007187 -128779268 + MIR3 SINE MIR 70 199 -9 416 310 101 45 chr12 15007320 15007588 -128778867 + L2 LINE L2 3030 3312 -1 201 300 44 22 chr12 15008052 15008142 -128778313 + MIR SINE MIR 165 256 -6 194 217 72 96 chr12 15009620 15009703 -128776752 + L2 LINE L2 3174 3254 -18 849 275 73 31 chr12 15009932 15010259 -128776196 + L3b LINE CR1 1151 1491 -92 217 123 37 49 chr12 15010318 15010399 -128776056 + C-rich Low_complexity Low_complexity 3 82 0 192 231 0 19 chr12 15010443 15010495 -128775960 - L2 LINE L2 -1 3312 3262 456 293 37 30 chr12 15011485 15011785 -128774670 - L1ME4a LINE L1 -76 6045 5744 28 0 0 0 chr12 15012761 15012789 -128773666 + AT_rich Low_complexity Low_complexity 1 28 0 368 261 37 52 chr12 15013686 15013820 -128772635 - MIR SINE MIR -67 141 9 224 200 0 55 chr12 15014062 15014117 -128772338 + GA-rich Low_complexity Low_complexity 2 53 0 447 35 0 0 chr12 15014154 15014211 -128772244 + (CA)n Simple_repeat Simple_repeat 1 57 0 212 217 0 29 chr12 15014619 15014688 -128771767 + A-rich Low_complexity Low_complexity 5 71 0 320 231 13 0 chr12 15014919 15014997 -128771458 - MER113 DNA MER1_type? -441 80 2 559 191 15 73 chr12 15015300 15015451 -128771004 + MIR SINE MIR 101 241 -21 705 188 109 0 chr12 15016221 15016349 -128770106 + MER5A DNA MER1_type 1 142 -47 666 240 6 44 chr12 15016640 15016823 -128769632 - L2 LINE L2 -1 3312 3137 753 263 140 47 chr12 15017406 15017706 -128768749 + MER102a DNA MER1_type 2 329 -1 224 262 84 65 chr12 15018881 15018988 -128767467 - L2 LINE L2 -1 3271 3163 590 244 111 70 chr12 15019050 15019321 -128767134 + MLT1E LTR MaLR 1 282 -260 657 202 69 35 chr12 15019329 15019502 -128766953 + MLT1E LTR MaLR 413 591 -2 201 274 153 53 chr12 15019827 15020017 -128766438 - L2 LINE L2 -556 2758 2550 368 227 78 26 chr12 15020944 15021098 -128765357 - L1ME4a LINE L1 -1 6120 5959 2262 91 3 7 chr12 15021126 15021422 -128765033 - AluSp SINE Alu -18 295 1 508 232 19 57 chr12 15022382 15022539 -128763916 + MIR3 SINE MIR 47 202 -6 245 242 11 84 chr12 15023192 15023287 -128763168 - L2 LINE L2 -3 3310 3223 647 248 33 33 chr12 15023569 15023779 -128762676 - MIR SINE MIR -30 232 23 418 336 168 23 chr12 15025692 15026425 -128760030 + L2 LINE L2 1946 2784 -530 379 258 28 107 chr12 15026771 15026949 -128759506 + L2 LINE L2 2896 3059 -213 237 299 28 102 chr12 15027094 15027271 -128759184 - L2 LINE L2 -213 3059 2896 276 282 126 0 chr12 15027295 15027398 -128759057 + L2 LINE L2 3197 3312 -1 422 296 42 42 chr12 15027414 15027556 -128758899 - MIR SINE MIR -70 192 51 524 257 68 99 chr12 15028400 15028723 -128757732 - L2 LINE L2 0 3313 3001 359 231 48 48 chr12 15029451 15029598 -128756857 - MIR3 SINE MIR -4 204 58 427 250 56 7 chr12 15029747 15029891 -128756564 - MER103 DNA DNA -10 156 6 536 315 81 5 chr12 15030137 15030359 -128756096 - MIR SINE MIR -18 244 6 205 336 71 44 chr12 15031000 15031113 -128755342 + L2 LINE L2 3147 3262 -10 186 320 0 40 chr12 15031942 15032017 -128754438 + MIR SINE MIR 34 105 -103 1524 249 40 49 chr12 15032090 15032516 -128753939 - MLT1E LTR MaLR 0 593 172 915 152 8 0 chr12 15032518 15032650 -128753805 + FLAM_C SINE Alu 1 133 0 348 161 0 0 chr12 15032662 15032724 -128753731 + GA-rich Low_complexity Low_complexity 3 64 0 297 197 49 0 chr12 15032724 15032785 -128753670 - MLT1E LTR MaLR -409 184 121 398 158 232 0 chr12 15032792 15032887 -128753568 - MLT1E LTR MaLR -433 160 44 17239 126 8 3 chr12 15033722 15036127 -128750328 + Tigger1 DNA MER2_type 1 2418 0 361 332 100 14 chr12 15036419 15036639 -128749816 + MIR SINE MIR 6 244 -18 369 256 66 16 chr12 15036876 15036997 -128749458 - MIR SINE MIR -65 143 17 2003 127 3 7 chr12 15037122 15037440 -128749015 - AluSx SINE Alu 0 317 1 486 373 18 9 chr12 15037636 15037853 -128748602 + L3 LINE CR1 606 824 -753 1883 139 29 4 chr12 15037973 15038246 -128748209 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr12 15038246 15038273 -128748182 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1120 161 0 0 chr12 15039072 15039240 -128747215 - FRAM SINE Alu -7 169 2 347 296 22 22 chr12 15039413 15039592 -128746863 + GA-rich Low_complexity Low_complexity 2 180 0 271 343 102 6 chr12 15039768 15039934 -128746521 + L3b LINE CR1 1107 1288 -295 277 257 168 18 chr12 15040178 15040291 -128746164 + MIR SINE MIR 20 149 -113 514 310 75 19 chr12 15042183 15042396 -128744059 + L2 LINE L2 2190 2414 -900 * 834 260 39 5 chr12 15042392 15042600 -128743855 - MIR SINE MIR -9 253 39 1611 281 91 12 chr12 15042632 15043479 -128742976 + L2 LINE L2 2380 3312 -1 1483 246 73 26 chr12 15044619 15045045 -128741410 + MLT1J1 LTR MaLR 1 446 0 243 373 59 25 chr12 15045075 15045193 -128741262 + L2 LINE L2 3132 3253 -19 637 216 167 0 chr12 15045971 15046133 -128740322 - MER5A DNA MER1_type 0 189 1 376 230 296 7 chr12 15046413 15046548 -128739907 - MER5B DNA MER1_type -2 176 3 384 323 24 16 chr12 15047607 15047734 -128738721 + MIR SINE MIR 7 134 -128 1688 154 74 40 chr12 15048172 15048523 -128737932 + THE1C LTR MaLR 1 363 -12 567 257 120 68 chr12 15048523 15048932 -128737523 - MLT1H LTR MaLR -13 536 107 326 276 41 24 chr12 15049002 15049125 -128737330 + MIR SINE MIR 138 262 0 395 332 46 98 chr12 15049188 15049667 -128736788 - L2 LINE L2 -2 3270 2817 202 307 172 17 chr12 15049704 15049942 -128736513 - L2 LINE L2 -440 2874 2600 377 240 0 0 chr12 15051285 15051360 -128735095 + MIR SINE MIR 4 78 -184 342 287 61 0 chr12 15051859 15051974 -128734481 - MIR SINE MIR -12 250 129 267 254 16 0 chr12 15051986 15052049 -128734406 - MLT1K LTR MaLR -3 585 522 201 121 0 0 chr12 15052508 15052541 -128733914 + (G)n Simple_repeat Simple_repeat 1 33 0 326 311 19 28 chr12 15052612 15052718 -128733737 - MIR SINE MIR -148 114 10 272 169 0 108 chr12 15053833 15053898 -128732557 - MIR SINE MIR -133 129 72 548 293 82 33 chr12 15055571 15056050 -128730405 + L1ME3A LINE L1 5158 5656 -751 248 267 47 12 chr12 15056083 15056169 -128730286 + L1ME3A LINE L1 5730 5818 -303 2155 168 36 36 chr12 15056395 15056787 -128729668 + MSTD LTR MaLR 1 392 -4 264 30 0 0 chr12 15057705 15057738 -128728717 + (A)n Simple_repeat Simple_repeat 1 33 0 213 213 131 0 chr12 15058632 15058693 -128727762 - MIR3 SINE MIR -28 180 112 213 315 0 0 chr12 15058663 15058736 -128727719 - MIR SINE MIR -122 140 68 517 242 72 41 chr12 15058836 15059030 -128727425 + MER63A DNA MER1_type 1 200 -10 488 269 185 23 chr12 15059458 15059674 -128726781 + MIR SINE MIR 2 252 -10 242 286 0 14 chr12 15059686 15059756 -128726699 + L2 LINE L2 3203 3271 -1 713 327 92 53 chr12 15059898 15060559 -128725896 - L3 LINE CR1 -497 1080 320 223 350 109 42 chr12 15060630 15060941 -128725514 - L2 LINE L2 -491 2823 2492 310 305 130 0 chr12 15062346 15062477 -128723978 + L2 LINE L2 3123 3270 -2 766 234 62 4 chr12 15063239 15063465 -128722990 + L1ME3A LINE L1 5931 6169 -1 397 352 28 22 chr12 15064449 15064631 -128721824 + MIR3 SINE MIR 19 201 -7 300 322 125 7 chr12 15064952 15065104 -128721351 + MIR3 SINE MIR 19 188 -20 201 94 0 0 chr12 15065297 15065329 -128721126 + (T)n Simple_repeat Simple_repeat 1 32 0 510 286 136 28 chr12 15065533 15065746 -128720709 - MIR SINE MIR -6 256 21 282 323 126 0 chr12 15065811 15065978 -128720477 + MIR SINE MIR 2 189 -73 214 357 32 38 chr12 15066472 15066629 -128719826 + L3 LINE CR1 938 1093 -484 332 309 65 16 chr12 15068436 15068559 -128717896 - MER5B DNA MER1_type -4 174 46 303 210 12 25 chr12 15068590 15068671 -128717784 + MER5B DNA MER1_type 60 139 -39 2649 47 0 0 chr12 15069554 15069854 -128716601 - AluY SINE Alu -11 300 1 573 52 102 0 chr12 15071862 15072194 -128714261 + (TA)n Simple_repeat Simple_repeat 1 365 0 2320 139 37 51 chr12 15072748 15073180 -128713275 + MSTB1 LTR MaLR 3 428 -4 288 0 0 0 chr12 15073761 15073793 -128712662 + (TG)n Simple_repeat Simple_repeat 2 33 0 279 0 0 0 chr12 15073794 15073825 -128712630 + (GA)n Simple_repeat Simple_repeat 2 32 0 221 365 10 19 chr12 15073961 15074065 -128712390 + L2 LINE L2 2953 3055 -217 420 312 16 8 chr12 15075404 15075529 -128710926 - MIR SINE MIR -108 154 29 235 261 0 14 chr12 15075672 15075741 -128710714 + (TTA)n Simple_repeat Simple_repeat 3 70 0 294 271 209 0 chr12 15075770 15075899 -128710556 - MIR SINE MIR -14 248 93 1106 210 98 88 chr12 15077738 15078195 -128708260 + MLT1C LTR MaLR 6 467 0 237 65 0 0 chr12 15078827 15078858 -128707597 + (CA)n Simple_repeat Simple_repeat 2 32 0 201 147 0 0 chr12 15079120 15079154 -128707301 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 4396 93 30 3 chr12 15081523 15082146 -128704309 - MER51C LTR ERV1 0 640 1 453 283 81 0 chr12 15082171 15082344 -128704111 - MIR SINE MIR -74 188 2 7223 53 29 1 chr12 15084661 15086265 -128700190 - L1PA7 LINE L1 0 6154 4525 1567 195 20 63 chr12 15086768 15087163 -128699292 - MER83B LTR ERV1 0 378 1 296 360 54 14 chr12 15087206 15087353 -128699102 + L2 LINE L2 3102 3254 -18 202 298 140 18 chr12 15087712 15087826 -128698629 - MIR SINE MIR -48 214 87 * 611 233 35 6 chr12 15087803 15087975 -128698480 + MIR SINE MIR 79 255 -7 4263 64 4 20 chr12 15088564 15089124 -128697331 + L1PA8 LINE L1 5622 6172 0 522 168 10 0 chr12 15090206 15090307 -128696148 + MER53 DNA DNA 8 109 -80 477 30 0 242 chr12 15091367 15091466 -128694989 + MADE1 DNA Mariner 3 77 -3 2043 152 10 0 chr12 15091691 15092026 -128694429 + AluJb SINE Alu 1 338 0 437 247 48 24 chr12 15092238 15092404 -128694051 + L2 LINE L2 3144 3313 0 189 184 26 0 chr12 15093155 15093193 -128693262 + L2 LINE L2 3228 3266 -6 326 229 90 16 chr12 15093688 15093810 -128692645 + MER103 DNA DNA 4 134 -32 186 118 0 0 chr12 15094898 15094932 -128691523 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 423 250 38 30 chr12 15094932 15095064 -128691391 - L2 LINE L2 -23 3290 3158 333 215 141 7 chr12 15095078 15095227 -128691228 - L2 LINE L2 -310 3003 2835 630 226 102 0 chr12 15095883 15096060 -128690395 + MIR SINE MIR 47 241 -21 277 355 11 21 chr12 15097302 15097395 -128689060 - MIR SINE MIR -152 110 19 2246 134 0 0 chr12 15097419 15097718 -128688737 - AluSx SINE Alu -13 299 1 2021 217 69 11 chr12 15098148 15098614 -128687841 + L1ME1 LINE L1 5612 6104 -62 249 180 0 0 chr12 15099737 15099787 -128686668 + (ATG)n Simple_repeat Simple_repeat 2 51 0 838 251 57 16 chr12 15099790 15100037 -128686418 - MIR SINE MIR 0 262 6 544 300 33 33 chr12 15100386 15100629 -128685826 + L2 LINE L2 2907 3149 -164 2189 214 57 9 chr12 15100635 15101162 -128685293 - MLT1H1 LTR MaLR 0 555 4 420 253 0 0 chr12 15101165 15101252 -128685203 + FLAM SINE Alu 40 126 -17 233 295 74 25 chr12 15101290 15101412 -128685043 + L2 LINE L2 3179 3306 -7 238 206 0 32 chr12 15101417 15101480 -128684975 + (TGAA)n Simple_repeat Simple_repeat 4 64 0 286 281 74 30 chr12 15101480 15101615 -128684840 + L2 LINE L2 3173 3313 0 218 298 58 19 chr12 15102262 15102366 -128684089 + MIR SINE MIR 38 145 -117 1911 170 0 19 chr12 15102493 15102811 -128683644 + AluSx SINE Alu 1 312 0 21 36 0 0 chr12 15102894 15102922 -128683533 + AT_rich Low_complexity Low_complexity 1 28 0 251 345 3 6 chr12 15103507 15103617 -128682838 - MIR SINE MIR -87 121 13 2004 146 0 7 chr12 15103631 15103969 -128682486 - AluJb SINE Alu 0 312 1 1995 218 91 11 chr12 15104058 15104594 -128681861 - L1M4 LINE L1 -912 5234 4656 28 29 0 0 chr12 15104645 15104680 -128681775 + AT_rich Low_complexity Low_complexity 1 35 0 318 341 61 12 chr12 15105131 15105295 -128681160 + MIR3 SINE MIR 12 183 -25 750 258 21 42 chr12 15105840 15105886 -128680569 - MIR SINE MIR -10 252 207 2382 72 0 0 chr12 15105886 15106176 -128680279 - AluY SINE Alu -21 290 1 750 258 21 42 chr12 15106176 15106369 -128680086 - MIR SINE MIR -55 207 18 237 167 0 0 chr12 15107324 15107378 -128679077 + CT-rich Low_complexity Low_complexity 1 54 0 2373 185 12 51 chr12 15109656 15110142 -128676313 - MLT1C LTR MaLR 0 467 1 292 343 29 0 chr12 15111938 15112078 -128674377 + CT-rich Low_complexity Low_complexity 1 144 0 368 324 195 18 chr12 15123772 15124756 -128661699 + L2 LINE L2 1597 2754 -560 253 386 33 26 chr12 15125080 15125233 -128661222 + L2 LINE L2 3105 3258 -14 21 0 0 0 chr12 15125233 15125254 -128661201 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr12 15129627 15129658 -128656797 + AT_rich Low_complexity Low_complexity 1 31 0 592 313 39 10 chr12 15131336 15131544 -128654911 - MIR SINE MIR -3 259 46 306 250 36 79 chr12 15131948 15132088 -128654367 - HAL1b LINE L1 -22 1326 1193 21 0 0 0 chr12 15132274 15132295 -128654160 + AT_rich Low_complexity Low_complexity 1 21 0 849 363 100 26 chr12 15132515 15133394 -128653061 + L2 LINE L2 2030 2973 -341 203 323 71 10 chr12 15133606 15133705 -128652750 + L2 LINE L2 3177 3281 -32 936 128 43 32 chr12 15135495 15135682 -128650773 - MER53 DNA DNA 0 189 1 252 338 0 0 chr12 15137331 15137408 -128649047 + CT-rich Low_complexity Low_complexity 2 78 0 2418 152 49 2 chr12 15137440 15137848 -128648607 - MSTB1 LTR MaLR -5 427 1 646 209 121 70 chr12 15138293 15138566 -128647889 + L2 LINE L2 3022 3308 -5 302 283 38 94 chr12 15138752 15138964 -128647491 - MIR3 SINE MIR -6 202 3 915 259 92 45 chr12 15141409 15141745 -128644710 - MLT1J LTR MaLR -102 409 58 2181 134 0 0 chr12 15141745 15142044 -128644411 + AluSx SINE Alu 1 299 -13 1606 163 53 23 chr12 15142631 15142932 -128643523 + AluJb SINE Alu 3 312 0 2040 83 41 8 chr12 15143148 15143414 -128643041 + AluSg1 SINE Alu 3 277 -32 189 0 0 0 chr12 15143416 15143437 -128643018 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 194 191 88 73 chr12 15144353 15144421 -128642034 + L3 LINE CR1 374 442 -1135 2384 82 23 0 chr12 15145073 15145377 -128641078 - AluSp SINE Alu -2 311 1 490 266 0 73 chr12 15145523 15145715 -128640740 - MER5B DNA MER1_type 0 178 1 2362 97 0 0 chr12 15146965 15147265 -128639190 + AluY SINE Alu 1 300 -11 2198 95 0 33 chr12 15147417 15147722 -128638733 - AluSq SINE Alu -2 311 17 374 335 69 35 chr12 15149538 15149741 -128636714 + L2 LINE L2 2890 3099 -173 435 243 16 68 chr12 15150460 15150596 -128635859 + MIR SINE MIR 1 144 -64 182 341 23 34 chr12 15150595 15150683 -128635772 + L3 LINE CR1 1488 1574 -3 * 356 336 24 28 chr12 15151236 15151447 -128635008 + L2 LINE L2 2338 2547 -767 485 311 15 0 chr12 15151469 15151604 -128634851 + L2 LINE L2 3136 3272 0 180 343 29 14 chr12 15152253 15152323 -128634132 + MIR SINE MIR 83 153 -55 2122 87 0 8 chr12 15152845 15153142 -128633313 - AluY SINE Alu 0 311 17 437 308 47 6 chr12 15153907 15154076 -128632379 + MIR SINE MIR 58 233 -29 24 0 0 0 chr12 15154470 15154494 -128631961 + AT_rich Low_complexity Low_complexity 1 24 0 216 111 0 0 chr12 15155716 15155752 -128630703 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 316 241 155 43 chr12 15156316 15156432 -128630023 - L2 LINE L2 0 3272 3144 411 352 90 7 chr12 15157185 15157330 -128629125 + MIR3 SINE MIR 16 172 -36 * 416 221 24 144 chr12 15157327 15157535 -128628920 + MIR SINE MIR 16 198 -64 2070 75 11 4 chr12 15157540 15157805 -128628650 + L1PB1 LINE L1 5884 6150 -1 275 65 22 0 chr12 15157882 15157928 -128628527 + (TA)n Simple_repeat Simple_repeat 1 47 0 2210 112 10 0 chr12 15157928 15158222 -128628233 - AluSq SINE Alu -15 298 2 28 0 0 0 chr12 15158222 15158250 -128628205 + AT_rich Low_complexity Low_complexity 1 28 0 259 219 37 24 chr12 15159122 15159204 -128627251 + CT-rich Low_complexity Low_complexity 3 85 0 336 331 19 0 chr12 15159664 15159818 -128626637 - LTR16C LTR ERVL -49 442 286 274 364 7 20 chr12 15160925 15161076 -128625379 - LTR16C LTR ERVL 0 491 343 1471 25 0 0 chr12 15161176 15161336 -128625119 + L1PA7 LINE L1 5995 6154 0 2484 318 126 41 chr12 15161690 15163646 -128622809 + L2 LINE L2 1178 3308 -5 282 218 18 0 chr12 15166873 15166928 -128619527 - L2 LINE L2 -6 3266 3211 280 298 74 88 chr12 15167207 15167373 -128619082 + MIR SINE MIR 30 194 -68 324 0 0 0 chr12 15167373 15167409 -128619046 + (CA)n Simple_repeat Simple_repeat 2 37 0 280 298 74 88 chr12 15167409 15167457 -128618998 + MIR SINE MIR 194 241 -21 216 228 18 0 chr12 15167836 15167893 -128618562 + CT-rich Low_complexity Low_complexity 3 60 0 209 379 24 40 chr12 15168242 15168366 -128618089 - L2 LINE L2 -3 3269 3148 295 271 0 0 chr12 15168886 15168956 -128617499 + (TTCA)n Simple_repeat Simple_repeat 1 70 0 228 212 15 30 chr12 15169335 15169401 -128617054 + (CAT)n Simple_repeat Simple_repeat 1 65 0 496 224 0 42 chr12 15169598 15169741 -128616714 + L1PB4 LINE L1 6020 6156 0 2078 189 25 96 chr12 15171845 15172086 -128614369 - L1ME2 LINE L1 -44 6120 5863 11809 33 2 1 chr12 15172086 15174269 -128612186 - L1PA4 LINE L1 -3 6152 3968 2078 189 25 96 chr12 15174269 15174671 -128611784 - L1ME2 LINE L1 -301 5863 5523 288 234 11 53 chr12 15174768 15174862 -128611593 - LTR50 LTR ERVL -217 578 489 1160 230 61 18 chr12 15174870 15175262 -128611193 - L1MDa LINE L1 -5123 1417 1009 225 331 15 15 chr12 15175306 15175436 -128611019 - L1MDa LINE L1 -5935 595 466 433 211 88 88 chr12 15175510 15175657 -128610798 + L2 LINE L2 3166 3312 -1 213 227 288 38 chr12 15175731 15175863 -128610592 + MIR SINE MIR 84 248 -14 243 200 75 50 chr12 15176119 15176199 -128610256 + MIR SINE MIR 100 181 -81 204 355 0 16 chr12 15177756 15177818 -128608637 - L2 LINE L2 -207 3065 3005 765 322 70 23 chr12 15178354 15178739 -128607716 - L3b LINE CR1 -78 1505 1103 195 254 36 18 chr12 15179304 15179359 -128607096 - L2 LINE L2 -16 3256 3201 425 235 22 44 chr12 15179643 15179779 -128606676 - MIR SINE MIR 0 262 130 302 252 148 0 chr12 15180732 15180867 -128605588 + L1ME LINE L1 5672 5826 -295 468 285 32 19 chr12 15181404 15181562 -128604893 - MER91B DNA MER1_type -12 178 19 245 344 16 62 chr12 15182897 15183025 -128603430 + L2 LINE L2 3147 3268 -4 1868 153 18 49 chr12 15183187 15183574 -128602881 + THE1C LTR MaLR 1 375 0 705 302 133 7 chr12 15183631 15183932 -128602523 - MLT1G1 LTR MaLR -2 593 255 415 221 14 114 chr12 15183944 15184084 -128602371 - MLT1G1 LTR MaLR -421 134 9 2189 113 3 3 chr12 15184590 15184883 -128601572 + AluSg SINE Alu 1 293 -17 2179 112 0 0 chr12 15185494 15185789 -128600666 + AluSx SINE Alu 1 295 -17 423 0 0 0 chr12 15189773 15189820 -128596635 + (TA)n Simple_repeat Simple_repeat 1 47 0 415 245 64 28 chr12 15189858 15190001 -128596454 + MIR3 SINE MIR 12 162 -46 246 233 83 0 chr12 15190060 15190120 -128596335 + L2 LINE L2 3244 3308 -5 242 293 121 7 chr12 15190754 15190894 -128595561 + MER5B DNA MER1_type 4 159 -19 27 49 0 0 chr12 15191084 15191125 -128595330 + AT_rich Low_complexity Low_complexity 1 41 0 3298 153 23 28 chr12 15191176 15191409 -128595046 - MER6A DNA MER2_type -260 605 372 2440 90 3 0 chr12 15191409 15191721 -128594734 + AluSp SINE Alu 1 313 0 3298 153 23 28 chr12 15191721 15192095 -128594360 - MER6A DNA MER2_type -493 372 1 23 68 0 0 chr12 15193988 15194032 -128592423 + AT_rich Low_complexity Low_complexity 1 44 0 198 0 0 0 chr12 15194081 15194103 -128592352 + (TG)n Simple_repeat Simple_repeat 1 22 0 338 61 20 0 chr12 15194147 15194196 -128592259 + (TG)n Simple_repeat Simple_repeat 1 50 0 391 190 0 38 chr12 15195087 15195166 -128591289 - MIR SINE MIR 0 262 187 217 341 23 23 chr12 15196173 15196261 -128590194 + MIR SINE MIR 4 91 -171 208 200 158 84 chr12 15196398 15196493 -128589962 + MIR SINE MIR 149 250 -12 254 306 157 39 chr12 15196865 15197202 -128589253 - L2 LINE L2 -964 2350 1974 1737 177 92 13 chr12 15197271 15197661 -128588794 - MSTB1 LTR MaLR 0 432 12 690 244 29 80 chr12 15200634 15200698 -128585757 - MIR SINE MIR 0 262 196 903 119 0 182 chr12 15200698 15200934 -128585521 - 7SK RNA RNA 0 193 1 690 244 29 80 chr12 15200934 15201144 -128585311 - MIR SINE MIR -66 196 2 305 229 42 10 chr12 15202674 15202770 -128583685 + L1MA9 LINE L1 6174 6272 -40 192 307 13 40 chr12 15202872 15202947 -128583508 - MIR SINE MIR -57 151 79 324 307 175 15 chr12 15203088 15203225 -128583230 + MIR3 SINE MIR 4 162 -46 455 324 88 0 chr12 15203738 15203908 -128582547 + MIR3 SINE MIR 20 204 -4 441 0 0 0 chr12 15203991 15204040 -128582415 + (CA)n Simple_repeat Simple_repeat 2 50 0 197 214 170 71 chr12 15204560 15204672 -128581783 - MIR SINE MIR -71 191 69 651 222 12 12 chr12 15205127 15205289 -128581166 - MARNA DNA Mariner -62 524 363 384 213 25 31 chr12 15205360 15205520 -128580935 + CT-rich Low_complexity Low_complexity 2 160 0 225 0 0 0 chr12 15205731 15205756 -128580699 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2650 55 0 3 chr12 15206241 15206553 -128579902 + AluY SINE Alu 1 311 0 190 369 9 7 chr12 15206569 15206682 -128579773 + L2 LINE L2 3115 3301 -12 1764 209 52 66 chr12 15206791 15207307 -128579148 + MLT1H LTR MaLR 41 549 0 208 346 74 56 chr12 15207535 15207873 -128578582 + L2 LINE L2 2627 2970 -344 421 243 54 127 chr12 15207953 15208212 -128578243 - MIR SINE MIR 0 262 23 298 274 44 53 chr12 15208257 15208370 -128578085 - MIR SINE MIR -81 127 16 233 297 59 20 chr12 15210775 15210876 -128575579 - MIR3 SINE MIR -6 202 98 390 316 23 18 chr12 15211864 15212035 -128574420 + MIR SINE MIR 91 262 0 2308 51 44 7 chr12 15213481 15213775 -128572680 + AluY SINE Alu 1 305 -6 1651 211 52 0 chr12 15213986 15214394 -128572061 - L1MA4 LINE L1 -5 6295 5867 2009 113 0 52 chr12 15215424 15215733 -128570722 + AluSg SINE Alu 1 293 -17 1696 157 44 63 chr12 15216219 15216601 -128569854 + AluJb SINE Alu 1 376 0 361 291 38 51 chr12 15217746 15217846 -128568609 + MIR SINE MIR 103 202 -60 4276 66 2 0 chr12 15217846 15218394 -128568061 + L1PA6 LINE L1 5606 6154 0 361 291 38 51 chr12 15218394 15218451 -128568004 + MIR SINE MIR 202 258 -4 533 296 62 6 chr12 15219043 15219205 -128567250 - MIR3 SINE MIR -24 184 14 2126 136 48 11 chr12 15219345 15219697 -128566758 - MLT1A1 LTR MaLR 0 365 1 187 331 48 48 chr12 15220251 15220375 -128566080 + MER5A DNA MER1_type 43 166 -23 * 380 257 14 0 chr12 15220326 15220400 -128566055 - MER5A DNA MER1_type -105 84 10 284 344 62 20 chr12 15220685 15220880 -128565575 + MIR SINE MIR 59 261 -1 220 316 26 13 chr12 15222717 15222793 -128563662 - L3 LINE CR1 -402 1175 1099 221 338 120 23 chr12 15224293 15224426 -128562029 - L2 LINE L2 0 3313 3168 482 347 11 4 chr12 15224630 15224892 -128561563 + L1ME LINE L1 5509 5772 -349 21 36 0 0 chr12 15224969 15224997 -128561458 + AT_rich Low_complexity Low_complexity 1 28 0 2622 135 7 27 chr12 15225190 15225633 -128560822 + Tigger2a DNA MER2_type 1 434 0 383 319 212 8 chr12 15226895 15227136 -128559319 + L2 LINE L2 3021 3310 -3 269 293 20 50 chr12 15227456 15227555 -128558900 - MIR SINE MIR -93 169 74 5748 139 23 6 chr12 15227897 15229209 -128557246 - L1MA8 LINE L1 0 6291 4960 220 324 0 0 chr12 15229486 15229557 -128556898 + MIR3 SINE MIR 138 208 0 234 0 0 0 chr12 15230009 15230035 -128556420 + (T)n Simple_repeat Simple_repeat 1 26 0 579 15 0 0 chr12 15230751 15230818 -128555637 - L1PA5 LINE L1 -264 5891 5825 1898 51 0 0 chr12 15230818 15231052 -128555403 + L1PA5 LINE L1 5917 6150 -4 204 40 0 0 chr12 15231052 15231077 -128555378 + (TA)n Simple_repeat Simple_repeat 1 25 0 794 198 171 0 chr12 15231311 15231498 -128554957 - MER20 DNA MER1_type 0 219 1 314 322 101 35 chr12 15231597 15231824 -128554631 + MIR SINE MIR 20 261 -1 361 308 148 38 chr12 15232038 15232503 -128553952 + L2 LINE L2 2607 3135 -178 979 119 0 0 chr12 15232519 15232653 -128553802 - AluSg/x SINE Alu -16 296 163 284 274 169 8 chr12 15232676 15232800 -128553655 + L2 LINE L2 3167 3310 -3 231 343 57 29 chr12 15232947 15233052 -128553403 + L2 LINE L2 3125 3232 -40 1428 176 13 83 chr12 15233576 15233878 -128552577 + AluJo SINE Alu 1 281 -31 2218 89 13 20 chr12 15235230 15235534 -128550921 - AluSg SINE Alu -8 302 1 358 254 246 0 chr12 15235827 15235969 -128550486 - MIR SINE MIR 0 262 86 1092 169 9 28 chr12 15236943 15237156 -128549299 + MER3 DNA MER1_type 1 209 0 251 200 31 15 chr12 15237327 15237392 -128549063 - MER116 DNA Mariner -12 68 3 202 224 20 0 chr12 15237469 15237518 -128548937 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 1823 168 33 48 chr12 15241272 15241666 -128544789 + MLT1B LTR MaLR 3 390 0 809 273 3 72 chr12 15241789 15242137 -128544318 - MER46C DNA MER2_type -14 324 1 381 276 48 0 chr12 15242674 15242779 -128543676 - L2 LINE L2 -4 3309 3200 246 331 121 16 chr12 15242862 15242986 -128543469 + L2 LINE L2 3136 3272 0 427 322 64 75 chr12 15243064 15243587 -128542868 + L2 LINE L2 2563 3089 -183 219 287 46 58 chr12 15243988 15244075 -128542380 - L2 LINE L2 -39 3233 3148 6471 241 55 24 chr12 15245176 15246872 -128539583 - L1MEc LINE L1 -1182 5033 3248 2536 65 0 10 chr12 15246872 15247178 -128539277 + AluSg SINE Alu 1 303 -7 6471 241 55 24 chr12 15247178 15247749 -128538706 - L1MEc LINE L1 -2967 3248 2696 238 26 51 0 chr12 15247755 15247794 -128538661 + (TA)n Simple_repeat Simple_repeat 2 42 0 339 25 0 0 chr12 15247796 15247836 -128538619 + (TG)n Simple_repeat Simple_repeat 1 40 0 2079 114 0 0 chr12 15247836 15248116 -128538339 - AluSq SINE Alu -33 280 1 1400 253 91 112 chr12 15248122 15248488 -128537967 - L1MEc LINE L1 -4009 2387 2015 2244 108 7 0 chr12 15248488 15248783 -128537672 + AluSp SINE Alu 1 297 -16 1400 253 91 112 chr12 15248783 15249999 -128536456 - L1MEc LINE L1 -4381 2015 868 2154 104 0 0 chr12 15249999 15250279 -128536176 - AluSg SINE Alu -30 280 1 1400 253 91 112 chr12 15250279 15251095 -128535360 - L1MEc LINE L1 -5528 868 37 780 297 99 37 chr12 15251120 15251689 -128534766 + L2 LINE L2 2709 3305 -8 2295 136 64 33 chr12 15253191 15253610 -128532845 + MSTB1 LTR MaLR 1 432 0 470 250 83 0 chr12 15254762 15254870 -128531585 + L2 LINE L2 3146 3262 -10 744 251 116 13 chr12 15254871 15255250 -128531205 - L1ME4a LINE L1 -219 5902 5485 290 243 63 36 chr12 15256034 15256145 -128530310 - MIR SINE MIR -62 146 33 2338 85 0 22 chr12 15256320 15256636 -128529819 - AluY SINE Alu -2 309 1 812 214 17 17 chr12 15257094 15257272 -128529183 + MER5B DNA MER1_type 1 178 0 231 36 0 0 chr12 15258071 15258099 -128528356 + (A)n Simple_repeat Simple_repeat 1 28 0 341 242 150 17 chr12 15259859 15259979 -128526476 - MIR SINE MIR -112 150 15 379 260 4 13 chr12 15261862 15261971 -128524484 - MIR SINE MIR -61 147 44 454 280 48 0 chr12 15262731 15262856 -128523599 + MIR SINE MIR 45 175 -87 401 290 66 2 chr12 15263483 15263620 -128522835 - MIR SINE MIR -63 145 3 198 217 188 14 chr12 15265085 15265154 -128521301 + MIR SINE MIR 175 255 -7 231 36 0 0 chr12 15265211 15265239 -128521216 + (T)n Simple_repeat Simple_repeat 1 28 0 289 92 0 197 chr12 15265293 15265326 -128521129 - L1PA10 LINE L1 0 6168 6157 260 27 27 0 chr12 15265326 15265363 -128521092 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 289 92 0 197 chr12 15265363 15265405 -128521050 - L1PA10 LINE L1 -11 6157 6108 230 93 0 23 chr12 15265520 15265563 -128520892 + (CA)n Simple_repeat Simple_repeat 1 42 0 31 26 0 0 chr12 15265680 15265718 -128520737 + AT_rich Low_complexity Low_complexity 1 38 0 292 342 32 0 chr12 15266913 15267043 -128519412 + MIR SINE MIR 25 123 -85 561 224 35 0 chr12 15267882 15267998 -128518457 + MIR3 SINE MIR 85 204 -4 401 292 66 51 chr12 15268380 15268517 -128517938 - MIR3 SINE MIR -55 153 15 23 0 0 0 chr12 15268632 15268655 -128517800 + AT_rich Low_complexity Low_complexity 1 23 0 390 290 69 8 chr12 15269295 15269426 -128517029 - MIR SINE MIR -105 157 19 21 0 0 0 chr12 15269505 15269526 -128516929 + AT_rich Low_complexity Low_complexity 1 21 0 218 354 7 14 chr12 15269911 15270058 -128516397 + GA-rich Low_complexity Low_complexity 2 147 0 385 280 80 40 chr12 15273084 15273284 -128513171 + MIR SINE MIR 3 210 -52 245 374 0 11 chr12 15273801 15273892 -128512563 + MER5B DNA MER1_type 37 126 -52 301 303 82 62 chr12 15274871 15275115 -128511340 - MIR SINE MIR -12 250 2 796 278 155 30 chr12 15275232 15275631 -128510824 + L2 LINE L2 2863 3311 -2 466 308 31 15 chr12 15276154 15276284 -128510171 - L2 LINE L2 0 3272 3141 2000 157 0 0 chr12 15276530 15276836 -128509619 + AluSg SINE Alu 2 307 -3 1973 142 6 25 chr12 15277228 15277546 -128508909 + AluSx SINE Alu 1 312 0 523 250 37 15 chr12 15277575 15277711 -128508744 - MIR SINE MIR -107 155 17 1060 215 122 42 chr12 15277720 15278148 -128508307 - MLT1C LTR MaLR 0 467 6 365 346 112 32 chr12 15278211 15278755 -128507700 - L2 LINE L2 -35 3237 2643 525 324 21 28 chr12 15278933 15279220 -128507235 + L2 LINE L2 2034 2318 -996 261 287 99 39 chr12 15279369 15279550 -128506905 - L2 LINE L2 -1458 1856 1665 300 70 0 0 chr12 15279669 15279712 -128506743 + (CA)n Simple_repeat Simple_repeat 1 43 0 320 333 33 0 chr12 15280384 15280504 -128505951 + MIR SINE MIR 91 214 -48 384 363 144 0 chr12 15281327 15281528 -128504927 - MIR SINE MIR -12 250 21 447 320 26 13 chr12 15281949 15282102 -128504353 + MIR SINE MIR 34 188 -74 2157 119 16 0 chr12 15282620 15282923 -128503532 - AluSx SINE Alu -4 308 1 275 337 35 13 chr12 15283515 15283633 -128502822 + MIR SINE MIR 2 119 -89 436 287 94 17 chr12 15284218 15284399 -128502056 - MIR SINE MIR -50 212 18 183 42 0 0 chr12 15284964 15284988 -128501467 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 757 280 37 18 chr12 15285730 15285948 -128500507 + MIR SINE MIR 21 242 -20 839 148 94 0 chr12 15287093 15287242 -128499213 + MER5B DNA MER1_type 1 163 -15 2237 117 0 0 chr12 15287655 15287955 -128498500 + AluSq SINE Alu 7 306 -7 270 287 62 84 chr12 15289128 15289326 -128497129 - MIR SINE MIR -54 208 23 571 157 0 26 chr12 15289747 15289862 -128496593 + L1PB4 LINE L1 6043 6154 -2 374 356 38 6 chr12 15289866 15290026 -128496429 - MIR SINE MIR -12 250 86 225 0 0 0 chr12 15290755 15290780 -128495675 + (CA)n Simple_repeat Simple_repeat 2 26 0 297 75 0 0 chr12 15291518 15291558 -128494897 + (T)n Simple_repeat Simple_repeat 1 40 0 381 103 147 0 chr12 15291741 15291809 -128494646 + MER116 DNA Mariner 1 78 -2 511 286 120 26 chr12 15291814 15292006 -128494449 - MIR SINE MIR -33 229 20 231 36 0 0 chr12 15292040 15292068 -128494387 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 314 233 111 89 chr12 15292080 15292260 -128494195 + MIR SINE MIR 37 220 -42 269 269 0 43 chr12 15293143 15293236 -128493219 + L1ME LINE L1 5507 5595 -526 369 271 113 40 chr12 15293238 15293415 -128493040 + L1 LINE L1 2338 2527 -3619 282 264 42 42 chr12 15293700 15293893 -128492562 + L1 LINE L1 2879 3071 -3075 1272 122 0 6 chr12 15294518 15294770 -128491685 + AluSc SINE Alu 1 295 -14 334 236 21 24 chr12 15294798 15294957 -128491498 + L1 LINE L1 3773 3927 -2219 417 311 92 12 chr12 15295086 15295337 -128491118 + L1 LINE L1 4411 4681 -1465 22 35 0 0 chr12 15295424 15295453 -128491002 + AT_rich Low_complexity Low_complexity 1 29 0 1168 111 5 15 chr12 15297262 15297460 -128488995 - L1PA11 LINE L1 -60 6114 5919 574 40 0 0 chr12 15297460 15297532 -128488923 + L1PA11 LINE L1 6100 6173 -1 2334 87 0 10 chr12 15297543 15297852 -128488603 + AluSc SINE Alu 1 306 -3 255 322 116 10 chr12 15297990 15298151 -128488304 + MIR SINE MIR 20 203 -59 * 270 308 68 38 chr12 15298134 15298267 -128488188 - L2 LINE L2 -4 3309 3173 451 282 72 36 chr12 15298444 15298639 -128487816 + MIR SINE MIR 21 222 -40 335 253 81 50 chr12 15299100 15299199 -128487256 + L2 LINE L2 3171 3272 0 310 313 263 19 chr12 15299887 15300047 -128486408 + MIR3 SINE MIR 3 201 -7 1013 287 39 48 chr12 15300049 15300080 -128486375 + LTR33 LTR ERVL 12 42 -479 2304 107 0 3 chr12 15300080 15300388 -128486067 + AluSx SINE Alu 1 307 -5 1013 287 39 48 chr12 15300388 15300871 -128485584 + LTR33 LTR ERVL 42 521 0 1749 164 7 0 chr12 15301404 15301702 -128484753 - MER7A DNA MER2_type 0 346 49 192 77 0 0 chr12 15303294 15303320 -128483135 + (TG)n Simple_repeat Simple_repeat 1 26 0 358 271 53 30 chr12 15304807 15304940 -128481515 + MIR SINE MIR 81 216 -46 2745 213 85 49 chr12 15305062 15306645 -128479810 - L1ME1 LINE L1 -5 6161 4535 1280 223 101 15 chr12 15306647 15307104 -128479351 - L1ME1 LINE L1 -1709 4437 3942 414 366 27 11 chr12 15308149 15308335 -128478120 + MER5A DNA MER1_type 1 189 0 1011 235 24 36 chr12 15309144 15309395 -128477060 - MIR SINE MIR -10 252 5 3261 133 75 82 chr12 15310454 15310751 -128475704 - Tigger3(Golem) DNA MER2_type 0 3028 2731 2221 114 0 0 chr12 15310751 15311048 -128475407 + AluSx SINE Alu 1 297 -15 3261 133 75 82 chr12 15311048 15311507 -128474948 - Tigger3(Golem) DNA MER2_type -297 2731 2277 567 119 0 136 chr12 15311495 15311613 -128474842 - Tigger3(Golem) DNA MER2_type -2918 111 10 * 273 264 126 44 chr12 15311767 15311926 -128474529 - MIR SINE MIR -21 241 70 207 171 0 0 chr12 15314065 15314100 -128472355 + (CACCAT)n Simple_repeat Simple_repeat 1 35 0 202 258 150 33 chr12 15314161 15314281 -128472174 - L2 LINE L2 -8 3305 3172 * 218 345 0 12 chr12 15314272 15314413 -128472042 - MIR SINE MIR -3 259 53 21 36 0 0 chr12 15314678 15314706 -128471749 + AT_rich Low_complexity Low_complexity 1 28 0 1145 267 46 20 chr12 15316219 15316957 -128469498 + L1ME4a LINE L1 5330 6119 -2 444 257 21 86 chr12 15317398 15317538 -128468917 - MIR3 SINE MIR -16 192 62 796 241 41 20 chr12 15319117 15319312 -128467143 + MIR SINE MIR 63 261 -1 432 302 16 8 chr12 15319893 15320019 -128466436 + MIR3 SINE MIR 75 201 -7 217 140 20 40 chr12 15320059 15320109 -128466346 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 424 37 0 0 chr12 15320236 15320328 -128466127 + L1PA3 LINE L1 6089 6180 0 435 232 27 19 chr12 15320580 15320768 -128465687 - MIR SINE MIR 0 262 14 2224 95 14 0 chr12 15320929 15321213 -128465242 + AluSp SINE Alu 1 288 -25 225 132 0 0 chr12 15321230 15321268 -128465187 + (CTA)n Simple_repeat Simple_repeat 3 40 0 221 283 87 22 chr12 15321326 15321418 -128465037 - MIR SINE MIR -116 146 49 189 0 0 0 chr12 15321539 15321560 -128464895 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2219 104 0 3 chr12 15322491 15322788 -128463667 + AluSp SINE Alu 1 296 -17 975 274 117 45 chr12 15323036 15323679 -128462776 - L1ME3A LINE L1 -225 6014 5326 589 172 55 7 chr12 15323770 15323915 -128462540 + MER3 DNA MER1_type 53 204 -5 704 283 91 20 chr12 15323926 15324386 -128462069 - L1ME3A LINE L1 -886 5329 4837 493 332 75 12 chr12 15324437 15324690 -128461765 - L1ME3A LINE L1 -1381 4834 4566 921 291 67 37 chr12 15324783 15324829 -128461626 - L1ME3A LINE L1 -2531 3684 3641 2109 125 3 0 chr12 15324829 15325125 -128461330 + AluSq SINE Alu 2 298 -15 921 291 67 37 chr12 15325125 15326066 -128460389 - L1ME3A LINE L1 -2574 3641 2668 371 284 128 30 chr12 15326248 15327208 -128459247 - L1ME3A LINE L1 -3786 2429 1409 303 269 0 106 chr12 15327292 15327433 -128459022 - L1M4 LINE L1 -3617 2529 2404 340 239 65 45 chr12 15327542 15327697 -128458758 - L1ME3A LINE L1 -5067 1138 981 304 327 19 0 chr12 15327933 15328037 -128458418 - L1ME3A LINE L1 -5480 725 620 28 61 0 0 chr12 15329105 15329154 -128457301 + AT_rich Low_complexity Low_complexity 1 49 0 1083 203 21 57 chr12 15329450 15329508 -128456947 + L1ME3 LINE L1 5834 5893 -269 2004 146 3 7 chr12 15329508 15329810 -128456645 + AluSx SINE Alu 1 301 -11 1083 203 21 57 chr12 15329810 15330086 -128456369 + L1ME3 LINE L1 5893 6156 -6 509 312 24 18 chr12 15330710 15330880 -128455575 - MIR SINE MIR -83 179 9 671 287 116 7 chr12 15330882 15331192 -128455263 - L3 LINE CR1 -194 1383 1040 358 353 29 58 chr12 15332823 15333135 -128453320 + L2 LINE L2 2554 2856 -458 239 321 71 12 chr12 15333410 15333494 -128452961 + L2 LINE L2 3176 3264 -49 295 282 68 10 chr12 15335001 15335104 -128451351 + MIR SINE MIR 102 210 -52 237 276 13 0 chr12 15335782 15335858 -128450597 + MIR SINE MIR 68 144 -64 891 237 0 5 chr12 15336099 15336293 -128450162 + MIR SINE MIR 70 262 0 4523 169 30 5 chr12 15336636 15337493 -128448962 + L1MA4 LINE L1 5408 6286 -14 827 207 61 5 chr12 15337827 15338025 -128448430 + MER3 DNA MER1_type 1 209 0 769 145 8 0 chr12 15338866 15338983 -128447472 + FLAM_C SINE Alu 1 118 -15 237 132 0 0 chr12 15338997 15339035 -128447420 + (CA)n Simple_repeat Simple_repeat 1 38 0 207 0 0 0 chr12 15339037 15339060 -128447395 + (TG)n Simple_repeat Simple_repeat 2 24 0 262 303 27 65 chr12 15339169 15339354 -128447101 - L2 LINE L2 -181 3091 2914 216 0 0 0 chr12 15340189 15340213 -128446242 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 362 301 46 75 chr12 15340363 15340536 -128445919 + MIR SINE MIR 20 187 -75 997 189 6 0 chr12 15340552 15340716 -128445739 + FRAM SINE Alu 1 158 -18 930 143 0 0 chr12 15342417 15342550 -128443905 + FLAM_A SINE Alu 1 133 0 321 127 152 51 chr12 15343136 15343215 -128443240 + LTR33A LTR ERVL 437 523 0 1955 145 0 26 chr12 15343416 15343726 -128442729 + AluSx SINE Alu 3 304 -8 225 211 78 125 chr12 15344029 15344157 -128442298 + L2 LINE L2 3188 3309 -4 443 285 31 57 chr12 15344242 15344435 -128442020 + MIR SINE MIR 74 261 -1 230 311 46 61 chr12 15345006 15345202 -128441253 + MLT1K LTR MaLR 2 194 -394 1313 243 87 23 chr12 15346529 15347011 -128439444 - LTR33 LTR ERVL -1 520 8 2382 81 3 0 chr12 15348971 15349279 -128437176 + AluY SINE Alu 1 309 -2 1221 168 5 28 chr12 15349669 15349883 -128436572 - MER58A DNA MER1_type -15 209 1 1984 132 0 42 chr12 15349971 15350282 -128436173 + AluJb SINE Alu 1 298 -14 2134 116 31 0 chr12 15350329 15350622 -128435833 + AluSx SINE Alu 1 302 -10 708 307 56 0 chr12 15351197 15351428 -128435027 - MIR SINE MIR 0 262 19 327 330 79 60 chr12 15351430 15351697 -128434758 + L3 LINE CR1 71 342 -1235 350 273 31 103 chr12 15351982 15352176 -128434279 + MIR SINE MIR 39 218 -44 2047 117 0 4 chr12 15352203 15352514 -128433941 + AluSc SINE Alu 1 310 0 438 325 30 18 chr12 15352556 15352722 -128433733 + L3 LINE CR1 373 540 -1037 710 294 126 68 chr12 15352956 15353385 -128433070 + L3 LINE CR1 642 1095 -482 26 30 0 0 chr12 15353424 15353457 -128432998 + AT_rich Low_complexity Low_complexity 1 33 0 2083 316 119 14 chr12 15353536 15354812 -128431643 + L2 LINE L2 1868 3299 -14 474 49 0 0 chr12 15355252 15355313 -128431142 + (TG)n Simple_repeat Simple_repeat 1 61 0 803 221 19 37 chr12 15355316 15355587 -128430868 + LTR33 LTR ERVL 256 521 0 209 320 41 57 chr12 15356305 15356427 -128430028 + L2 LINE L2 3184 3303 -10 406 283 12 57 chr12 15356667 15356884 -128429571 - MIR SINE MIR -56 206 3 865 300 12 4 chr12 15357795 15358038 -128428417 + MIR SINE MIR 18 262 0 626 298 54 30 chr12 15358044 15358376 -128428079 + L1MEc LINE L1 190 529 -6034 608 239 127 80 chr12 15358877 15359278 -128427177 + L1MEc LINE L1 851 1270 -5102 436 258 114 90 chr12 15359406 15359895 -128426560 + L1MEc LINE L1 1192 1840 -4692 436 293 46 36 chr12 15359903 15360183 -128426272 + L1MEc LINE L1 1889 2171 -4392 955 260 34 22 chr12 15360231 15360677 -128425778 + L1MEc LINE L1 2116 2566 -3997 1178 203 141 30 chr12 15360687 15361056 -128425399 + L1ME1 LINE L1 5606 6015 -149 234 128 0 0 chr12 15361056 15361095 -128425360 + MER3 DNA MER1_type 11 49 -160 253 214 55 0 chr12 15361116 15361197 -128425258 + L1ME1 LINE L1 6074 6161 -5 1734 159 19 12 chr12 15361523 15361843 -128424612 + MSTB LTR MaLR 1 322 -104 1344 153 36 14 chr12 15361843 15362066 -128424389 - AluJb SINE Alu -1 311 84 627 62 115 0 chr12 15362070 15362166 -128424289 + MSTB1 LTR MaLR 326 432 0 225 94 0 0 chr12 15362738 15362770 -128423685 + (CA)n Simple_repeat Simple_repeat 1 32 0 198 0 0 0 chr12 15363367 15363389 -128423066 + (CA)n Simple_repeat Simple_repeat 1 22 0 202 258 106 0 chr12 15365086 15365152 -128421303 - L2 LINE L2 -2 3311 3239 517 278 47 21 chr12 15365439 15365630 -128420825 - MIR SINE MIR -31 231 36 1510 281 48 9 chr12 15365710 15366296 -128420159 + L2 LINE L2 2709 3313 0 403 268 128 12 chr12 15366873 15367037 -128419418 - MIR SINE MIR -52 210 28 1737 190 59 48 chr12 15368444 15369034 -128417421 - Charlie2 DNA MER1_type -5 2857 2261 1034 244 109 6 chr12 15369153 15369473 -128416982 - Charlie2 DNA MER1_type -2499 363 11 782 297 57 8 chr12 15372619 15372865 -128413590 + MIR SINE MIR 5 262 0 889 119 91 40 chr12 15373371 15373547 -128412908 - MER53 DNA DNA -4 185 1 239 394 50 0 chr12 15373994 15374093 -128412362 + L2 LINE L2 3117 3220 -52 329 175 66 58 chr12 15375020 15375157 -128411298 + Charlie7 DNA MER1_type 2401 2538 -74 1809 231 126 15 chr12 15375171 15375737 -128410718 - MLT1G LTR MaLR -2 588 5 296 335 40 44 chr12 15375759 15376010 -128410445 + LTR33 LTR ERVL 30 279 -242 366 261 39 28 chr12 15376040 15376220 -128410235 + LTR33A LTR ERVL 328 509 -14 272 291 234 0 chr12 15376322 15376463 -128409992 + MIR3 SINE MIR 30 203 -5 1986 118 11 7 chr12 15376849 15377129 -128409326 + AluSx SINE Alu 23 303 -9 21 0 0 0 chr12 15377434 15377455 -128409000 + AT_rich Low_complexity Low_complexity 1 21 0 234 296 42 125 chr12 15378102 15378581 -128407874 - L2 LINE L2 -18 3254 2816 262 164 0 119 chr12 15380264 15380331 -128406124 + MER3 DNA MER1_type 146 204 -5 * 557 183 0 0 chr12 15380290 15380383 -128406072 - MER3 DNA MER1_type -116 93 1 202 333 143 29 chr12 15380600 15380810 -128405645 + MIR SINE MIR 21 254 -8 366 195 0 0 chr12 15380990 15381077 -128405378 + CT-rich Low_complexity Low_complexity 1 87 0 258 105 0 0 chr12 15382047 15382085 -128404370 + (T)n Simple_repeat Simple_repeat 1 38 0 778 253 103 0 chr12 15382312 15382506 -128403949 - MER20 DNA MER1_type -2 217 4 643 294 65 20 chr12 15382517 15382765 -128403690 - MIR SINE MIR -2 260 2 303 250 0 15 chr12 15384216 15384284 -128402171 + MER5B DNA MER1_type 2 68 -110 309 51 0 0 chr12 15384382 15384421 -128402034 + (CA)n Simple_repeat Simple_repeat 1 39 0 313 271 203 28 chr12 15385847 15386024 -128400431 - MIR SINE MIR -45 217 10 248 307 165 24 chr12 15387585 15387712 -128398743 - L3 LINE CR1 -1340 237 93 221 0 35 0 chr12 15387851 15387880 -128398575 + (CA)n Simple_repeat Simple_repeat 2 31 0 319 276 0 136 chr12 15388325 15388524 -128397931 + MIR SINE MIR 20 191 -71 522 306 111 14 chr12 15389032 15389248 -128397207 - MIR SINE MIR -4 258 22 623 250 132 5 chr12 15389660 15389872 -128396583 + MIR SINE MIR 5 243 -19 293 330 143 35 chr12 15389881 15390196 -128396259 - L2 LINE L2 -12 3260 2912 287 265 48 28 chr12 15390716 15390857 -128395598 - MIR SINE MIR -62 146 4 262 283 224 33 chr12 15391651 15391803 -128394652 + MIR SINE MIR 20 200 -62 1719 104 0 0 chr12 15392191 15392412 -128394043 - AluSg SINE Alu -51 259 39 210 341 44 0 chr12 15392433 15392524 -128393931 - L2 LINE L2 -213 3059 2965 264 295 63 32 chr12 15392803 15392898 -128393557 - L2 LINE L2 -11 3261 3164 22 0 0 0 chr12 15392899 15392921 -128393534 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr12 15392986 15393025 -128393430 + (CA)n Simple_repeat Simple_repeat 2 40 0 426 304 8 8 chr12 15394377 15394502 -128391953 - MER5B DNA MER1_type 0 178 54 180 163 0 0 chr12 15394512 15394555 -128391900 + T-rich Low_complexity Low_complexity 4 46 0 205 327 87 19 chr12 15394615 15394719 -128391736 - MIR SINE MIR -64 144 34 260 343 148 30 chr12 15396834 15397137 -128389318 + L2 LINE L2 2933 3271 -1 205 287 0 41 chr12 15397138 15397260 -128389195 + A-rich Low_complexity Low_complexity 2 118 0 445 265 204 0 chr12 15397518 15397665 -128388790 + MER5A DNA MER1_type 13 189 0 419 314 42 0 chr12 15397747 15397865 -128388590 + MIR3 SINE MIR 81 203 -5 467 339 39 30 chr12 15397952 15398182 -128388273 - L2 LINE L2 -1 3271 3040 245 169 17 0 chr12 15402906 15402965 -128383490 + GA-rich Low_complexity Low_complexity 2 61 0 242 273 11 11 chr12 15403193 15403281 -128383174 + (CACG)n Simple_repeat Simple_repeat 2 89 0 192 40 0 0 chr12 15404183 15404208 -128382247 + (CA)n Simple_repeat Simple_repeat 1 25 0 26 0 0 0 chr12 15405805 15405831 -128380624 + AT_rich Low_complexity Low_complexity 1 26 0 245 169 0 96 chr12 15406313 15406396 -128380059 + MER116 DNA Mariner 6 80 0 300 347 48 8 chr12 15406419 15406543 -128379912 + L2 LINE L2 3138 3266 -6 2205 109 10 3 chr12 15406778 15407082 -128379373 + AluSp SINE Alu 1 306 -7 2397 201 114 24 chr12 15407437 15408174 -128378281 - MER69 DNA AcHobo -21 2505 1703 864 119 0 0 chr12 15408186 15408320 -128378135 - LTR1 LTR ERV1 -642 143 10 974 270 30 4 chr12 15408569 15408802 -128377653 - MER69 DNA AcHobo -842 384 146 1460 153 0 0 chr12 15408811 15409027 -128377428 + AluSx SINE Alu 53 268 -44 22 0 0 0 chr12 15409031 15409053 -128377402 + AT_rich Low_complexity Low_complexity 1 22 0 604 243 88 0 chr12 15409053 15409201 -128377254 - MER69 DNA AcHobo -2364 162 2 2399 89 7 0 chr12 15409696 15409999 -128376456 - AluSg SINE Alu -5 305 1 258 156 0 0 chr12 15411180 15411225 -128375230 + (CA)n Simple_repeat Simple_repeat 1 45 0 384 247 0 0 chr12 15411341 15411414 -128375041 + L2 LINE L2 3197 3269 -44 30 77 0 0 chr12 15411630 15411695 -128374760 + AT_rich Low_complexity Low_complexity 1 65 0 586 258 67 86 chr12 15411695 15412067 -128374388 - HAL1 LINE L1 0 2507 2143 1147 262 51 16 chr12 15412088 15412462 -128373993 - L1MC4 LINE L1 -387 7655 7269 786 279 26 52 chr12 15412740 15413146 -128373309 + MLT1H LTR MaLR 23 535 -14 526 292 67 21 chr12 15413531 15413741 -128372714 - MIR SINE MIR -44 218 3 796 241 103 5 chr12 15414103 15414327 -128372128 - MIR SINE MIR 0 262 17 241 265 96 0 chr12 15414390 15414473 -128371982 - MLT1I LTR MaLR 0 409 319 493 281 75 6 chr12 15414625 15414785 -128371670 - MLT1I LTR MaLR -230 179 9 2082 122 0 53 chr12 15415276 15415595 -128370860 + AluSx SINE Alu 1 302 -10 1264 169 13 42 chr12 15415628 15415761 -128370694 + AluJb SINE Alu 1 125 -187 2280 107 0 23 chr12 15415761 15416071 -128370384 + AluSx SINE Alu 1 303 -9 1264 169 13 42 chr12 15416071 15416174 -128370281 + AluJb SINE Alu 125 230 -82 511 143 45 26 chr12 15416198 15416352 -128370103 + GA-rich Low_complexity Low_complexity 3 159 0 2351 48 7 14 chr12 15417275 15417568 -128368887 - AluY SINE Alu -9 302 12 248 314 0 0 chr12 15418986 15419056 -128367399 + L2 LINE L2 2169 2238 -1076 237 350 70 0 chr12 15419105 15419248 -128367207 + L2 LINE L2 2617 2769 -545 2159 113 27 87 chr12 15419490 15419860 -128366595 + MER7A DNA MER2_type 1 346 0 2170 135 43 32 chr12 15420556 15420927 -128365528 + THE1C LTR MaLR 1 375 0 2430 74 0 3 chr12 15422026 15422338 -128364117 - AluY SINE Alu 0 311 1 2539 101 8 3 chr12 15424309 15424675 -128361780 - L1PB1 LINE L1 -3 6864 6497 278 116 4 94 chr12 15424675 15424956 -128361499 + (TA)n Simple_repeat Simple_repeat 1 255 0 10486 156 72 22 chr12 15424965 15429939 -128356516 - L1PB1 LINE L1 -363 6504 1101 394 303 69 11 chr12 15430528 15430703 -128355752 + L3b LINE CR1 1161 1345 -238 239 261 15 0 chr12 15430723 15430788 -128355667 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 22 0 0 0 chr12 15431063 15431085 -128355370 + AT_rich Low_complexity Low_complexity 1 22 0 274 306 43 104 chr12 15431457 15431872 -128354583 - L2 LINE L2 -337 2977 2588 988 193 0 38 chr12 15432021 15432259 -128354196 + L1MB8 LINE L1 5934 6162 -16 627 203 54 20 chr12 15432273 15432421 -128354034 + MLT2C1 LTR ERVL 189 341 -56 195 181 0 48 chr12 15432421 15432526 -128353929 + (TAGA)n Simple_repeat Simple_repeat 2 101 0 2274 224 22 27 chr12 15432566 15433329 -128353126 + MLT1C-int LTR MaLR 1 875 -496 1532 243 90 0 chr12 15433540 15433918 -128352537 + MLT1C-int LTR MaLR 960 1371 0 1222 219 98 36 chr12 15433918 15434247 -128352208 + MLT1C LTR MaLR 1 365 -102 13837 129 48 18 chr12 15434247 15435627 -128350828 - Tigger1 DNA MER2_type 0 2418 939 2152 129 0 19 chr12 15435627 15435937 -128350518 - AluSx SINE Alu -8 304 1 13837 129 48 18 chr12 15435937 15436905 -128349550 - Tigger1 DNA MER2_type -1479 939 1 1222 219 98 36 chr12 15436905 15437014 -128349441 + MLT1C LTR MaLR 365 466 -1 32 57 0 0 chr12 15437568 15437621 -128348834 + AT_rich Low_complexity Low_complexity 1 53 0 632 289 127 52 chr12 15438191 15438654 -128347801 - MLT1J LTR MaLR -8 503 6 21 0 0 0 chr12 15438834 15438855 -128347600 + AT_rich Low_complexity Low_complexity 1 21 0 249 235 111 12 chr12 15439925 15440006 -128346449 - L2 LINE L2 0 3313 3225 180 0 0 0 chr12 15440112 15440132 -128346323 + (A)n Simple_repeat Simple_repeat 1 20 0 5319 264 75 15 chr12 15440238 15443945 -128342510 - L1ME1 LINE L1 -9 6655 2700 1151 272 65 59 chr12 15443957 15444268 -128342187 - L1ME1 LINE L1 -4153 2491 2184 2627 49 0 0 chr12 15444268 15444576 -128341879 - AluY SINE Alu -3 308 1 1151 272 65 59 chr12 15444576 15444733 -128341722 - L1ME1 LINE L1 -4460 2184 2030 1526 170 27 82 chr12 15444733 15445063 -128341392 - AluJo SINE Alu 0 312 1 1151 272 65 59 chr12 15445063 15445658 -128340797 - L1ME1 LINE L1 -4614 2030 1311 1185 235 15 0 chr12 15445707 15446048 -128340407 - L1ME1 LINE L1 -5190 1356 1011 24 0 0 0 chr12 15446053 15446077 -128340378 + AT_rich Low_complexity Low_complexity 1 24 0 251 307 52 26 chr12 15446211 15446364 -128340091 - L1ME1 LINE L1 -5667 875 719 225 0 0 0 chr12 15446732 15446757 -128339698 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 15447280 15447302 -128339153 + AT_rich Low_complexity Low_complexity 1 22 0 2084 113 3 13 chr12 15447308 15447441 -128339014 + AluSx SINE Alu 3 136 -176 2506 68 0 0 chr12 15447441 15447751 -128338704 + AluY SINE Alu 1 310 -1 2084 113 3 13 chr12 15447751 15447908 -128338547 + AluSx SINE Alu 136 292 -20 2384 82 3 19 chr12 15447908 15448226 -128338229 + AluSq SINE Alu 1 313 0 23 0 0 0 chr12 15449424 15449447 -128337008 + AT_rich Low_complexity Low_complexity 1 23 0 2083 123 3 3 chr12 15450009 15450309 -128336146 + AluJb SINE Alu 5 304 -8 1139 176 49 59 chr12 15450439 15450763 -128335692 - MER33 DNA MER1_type -3 321 1 217 320 90 0 chr12 15452040 15452162 -128334293 - L3b LINE CR1 -338 1245 1113 2076 116 3 3 chr12 15453654 15453960 -128332495 + AluSq SINE Alu 1 306 0 2432 190 39 16 chr12 15453990 15454484 -128331971 + MLT1D LTR MaLR 1 505 0 2470 84 0 3 chr12 15454608 15454917 -128331538 - AluSp SINE Alu -2 311 4 2465 196 20 46 chr12 15456029 15456590 -128329865 + MLT2B3 LTR ERVL 1 546 -8 738 225 19 9 chr12 15456891 15457104 -128329351 + L1 LINE L1 5117 5331 -815 1111 121 21 32 chr12 15457107 15457297 -128329158 + L1PA16 LINE L1 5970 6157 -9 2345 103 0 0 chr12 15457322 15457624 -128328831 + AluSx SINE Alu 1 302 -10 453 168 87 18 chr12 15457624 15457772 -128328683 + L1MB2 LINE L1 5279 5429 -743 30164 105 11 56 chr12 15457784 15464219 -128322236 + L1PA7 LINE L1 12 6141 -13 3923 140 22 32 chr12 15464232 15464991 -128321464 + L1MB2 LINE L1 5417 6168 -3 275 351 50 18 chr12 15466368 15466541 -128319914 + MIR SINE MIR 32 208 -54 2010 142 7 0 chr12 15466550 15466846 -128319609 - AluSx SINE Alu -14 298 1 845 168 69 0 chr12 15467315 15467488 -128318967 + MER3 DNA MER1_type 4 188 -21 240 35 0 0 chr12 15469199 15469228 -128317227 + (CA)n Simple_repeat Simple_repeat 1 29 0 233 343 96 61 chr12 15471069 15471573 -128314882 - L2 LINE L2 0 3272 2754 611 333 116 35 chr12 15472097 15472446 -128314009 - L2 LINE L2 -609 2705 2386 1802 158 24 30 chr12 15472446 15472744 -128313711 + AluJb SINE Alu 3 298 -14 611 333 116 35 chr12 15472744 15473022 -128313433 - L2 LINE L2 -928 2386 2027 426 156 126 52 chr12 15473513 15473648 -128312807 - MER112 DNA MER1_type -49 211 67 1758 143 91 96 chr12 15473699 15474127 -128312328 + MSTB LTR MaLR 1 426 0 829 271 52 61 chr12 15474217 15474450 -128312005 - LTR16C LTR ERVL -4 487 256 1077 219 37 0 chr12 15474450 15474665 -128311790 - MER58A DNA MER1_type -1 223 1 829 271 52 61 chr12 15474665 15474741 -128311714 - LTR16C LTR ERVL -235 256 181 27 0 0 0 chr12 15474855 15474882 -128311573 + AT_rich Low_complexity Low_complexity 1 27 0 211 356 74 22 chr12 15475399 15475534 -128310921 - MIR3 SINE MIR -46 162 21 943 235 169 86 chr12 15475724 15476226 -128310229 + MLT1H LTR MaLR 6 549 0 337 248 64 40 chr12 15478660 15478785 -128307670 - L2 LINE L2 -5 3308 3181 244 387 43 35 chr12 15478840 15479070 -128307385 + L2 LINE L2 2553 2784 -530 670 245 68 59 chr12 15479084 15479348 -128307107 - MIR SINE MIR -4 258 5 1665 139 70 22 chr12 15479614 15479887 -128306568 - AluSx SINE Alu -26 286 1 180 298 0 0 chr12 15480938 15480985 -128305470 - MIR SINE MIR -109 99 53 2204 114 18 47 chr12 15481567 15481953 -128304502 - THE1C LTR MaLR 0 375 1 391 278 309 11 chr12 15482785 15482976 -128303479 - MIR SINE MIR -8 254 7 4146 122 12 12 chr12 15482999 15483649 -128302806 + MER39B LTR ERV1 4 653 0 738 291 133 22 chr12 15484571 15484976 -128301479 - MLT1K LTR MaLR -17 571 122 697 249 17 28 chr12 15485536 15485713 -128300742 + LTR33 LTR ERVL 9 183 -338 542 209 22 22 chr12 15485823 15485962 -128300493 + LTR33 LTR ERVL 383 521 0 2508 46 0 3 chr12 15486960 15487267 -128299188 + AluY SINE Alu 1 306 -5 487 175 72 10 chr12 15488385 15488482 -128297973 + MLT1K LTR MaLR 480 582 -6 353 276 48 38 chr12 15489034 15489244 -128297211 + L1ME1 LINE L1 5613 5824 -297 477 192 231 19 chr12 15489308 15489464 -128296991 + MER53 DNA DNA 1 189 0 3983 156 50 1 chr12 15489554 15490220 -128296235 + MER50 LTR ERV1 13 710 -24 314 239 11 0 chr12 15490453 15490545 -128295910 + CT-rich Low_complexity Low_complexity 4 96 0 1470 213 195 24 chr12 15491071 15491532 -128294923 + MLT1F LTR MaLR 1 540 -2 250 233 78 35 chr12 15491574 15491690 -128294765 + L1MDb LINE L1 896 1016 -5393 526 248 79 25 chr12 15491731 15491933 -128294522 - L1M4 LINE L1 -1715 4431 4219 437 219 193 82 chr12 15491928 15492198 -128294257 + L1ME1 LINE L1 5863 6162 -4 * 22 0 0 0 chr12 15492436 15492458 -128293997 + AT_rich Low_complexity Low_complexity 1 22 0 226 211 77 19 chr12 15492504 15492556 -128293899 - MIR SINE MIR -75 133 79 238 397 19 6 chr12 15492646 15492802 -128293653 - L2 LINE L2 -211 3061 2904 1544 289 105 18 chr12 15493402 15493973 -128292482 + MLT1G LTR MaLR 1 577 -13 316 204 0 0 chr12 15494513 15494567 -128291888 - L2 LINE L2 -1 3312 3259 315 294 33 0 chr12 15495058 15495205 -128291250 - L1ME LINE L1 -695 5471 5319 190 284 68 27 chr12 15495511 15495585 -128290870 - L3 LINE CR1 -582 995 919 304 173 27 0 chr12 15496671 15496746 -128289709 + L1MEc LINE L1 1265 1341 -5055 1927 149 0 0 chr12 15496755 15497037 -128289418 + AluSx SINE Alu 5 286 -26 282 116 0 0 chr12 15497037 15497080 -128289375 + (TA)n Simple_repeat Simple_repeat 1 43 0 216 0 0 0 chr12 15497079 15497103 -128289352 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 2569 250 49 28 chr12 15497104 15498524 -128287931 + L1MEc LINE L1 2556 5047 -1168 619 213 0 0 chr12 15498524 15498632 -128287823 + Tigger3(Golem) DNA MER2_type 1 108 -2921 4718 112 30 3 chr12 15498633 15499357 -128287098 + Tigger3(Golem) DNA MER2_type 2285 3028 -1 3937 255 74 14 chr12 15499357 15500477 -128285978 - L1M3de LINE L1 -4575 2078 943 1081 208 48 107 chr12 15500533 15500940 -128285515 - MLT2B1 LTR ERVL -38 477 1 1324 284 75 16 chr12 15500949 15501647 -128284808 - L1M4 LINE L1 -1816 4330 3592 2278 81 3 17 chr12 15501708 15502006 -128284449 - AluY SINE Alu -17 294 1 326 218 30 0 chr12 15502036 15502137 -128284318 + (TA)n Simple_repeat Simple_repeat 1 104 0 46 33 0 0 chr12 15502161 15502221 -128284234 + AT_rich Low_complexity Low_complexity 1 60 0 769 61 0 0 chr12 15502267 15502365 -128284090 + L1PA6 LINE L1 1 98 -6048 * 36395 60 6 2 chr12 15502363 15507865 -128278590 + L1PA6 LINE L1 623 6147 -7 3913 190 60 12 chr12 15508028 15509183 -128277272 - L1MB7 LINE L1 0 6184 4977 6598 136 59 20 chr12 15509183 15509714 -128276741 - Tigger3b DNA MER2_type -1797 1231 722 2234 98 3 7 chr12 15509714 15510010 -128276445 - AluSq SINE Alu -18 295 1 6598 136 59 20 chr12 15510010 15510651 -128275804 - Tigger3b DNA MER2_type -2306 722 14 3223 235 38 110 chr12 15510655 15512317 -128274138 + L1M1 LINE L1 1320 2826 -3556 8346 45 1 0 chr12 15512317 15514116 -128272339 - L1PA5 LINE L1 -3 6151 4352 3223 235 38 110 chr12 15514116 15515011 -128271444 + L1M1 LINE L1 2826 3784 -2598 758 150 8 0 chr12 15515143 15515263 -128271192 + AluSg/x SINE Alu 172 292 -20 271 225 8 136 chr12 15515266 15515502 -128270953 + L1M1 LINE L1 4118 4323 -2059 330 283 90 21 chr12 15515626 15515771 -128270684 + L1M1 LINE L1 4406 4560 -1822 34323 78 21 14 chr12 15616127 15619617 -128166838 - HERVL-A1 LTR ERVL -1112 4542 1079 1985 141 0 33 chr12 15619617 15619923 -128166532 + AluSx SINE Alu 1 296 -16 34323 78 21 14 chr12 15619923 15620589 -128165866 - HERVL-A1 LTR ERVL -4575 1079 348 2109 76 4 8 chr12 15620589 15620853 -128165602 - AluY SINE Alu -20 291 29 34323 78 21 14 chr12 15620853 15621204 -128165251 - HERVL-A1 LTR ERVL -5306 348 1 2860 111 23 20 chr12 15621204 15621647 -128164808 - MLT2A1 LTR ERVL 0 444 1 10928 169 8 28 chr12 15621670 15623466 -128162989 + L1P4 LINE L1 3275 5015 -1146 2221 75 0 7 chr12 15623466 15623744 -128162711 + AluY SINE Alu 36 311 0 10928 169 8 28 chr12 15623744 15624192 -128162263 + L1P4 LINE L1 5015 5470 -691 418 192 0 0 chr12 15624192 15624265 -128162190 + AluSp SINE Alu 116 188 -115 2117 112 7 0 chr12 15624265 15624551 -128161904 + AluSq SINE Alu 18 305 -8 2470 79 3 0 chr12 15624572 15624876 -128161579 + AluSc SINE Alu 1 305 -4 1317 210 104 22 chr12 15624977 15625343 -128161112 - MSTD LTR MaLR 0 396 1 189 0 0 0 chr12 15625428 15625449 -128161006 + (T)n Simple_repeat Simple_repeat 1 21 0 1124 239 17 3 chr12 15625479 15625768 -128160687 + L1MA4 LINE L1 6005 6297 -3 230 183 17 17 chr12 15625764 15625824 -128160631 + L1M1 LINE L1 4880 4939 -1443 * 2351 50 4 0 chr12 15625828 15626108 -128160347 + AluY SINE Alu 1 281 -30 951 230 261 46 chr12 15626123 15626416 -128160039 + LTR50 LTR ERVL 150 378 -417 2033 136 0 7 chr12 15626416 15626710 -128159745 + AluSx SINE Alu 1 292 -20 951 230 261 46 chr12 15626710 15626726 -128159729 + LTR50 LTR ERVL 378 389 -406 2384 59 3 3 chr12 15626726 15627016 -128159439 - AluY SINE Alu -19 292 3 951 230 261 46 chr12 15627016 15627187 -128159268 + LTR50 LTR ERVL 389 735 -60 565 237 0 66 chr12 15627234 15627326 -128159129 - Tigger6a DNA MER2_type -516 1081 1001 859 87 24 0 chr12 15627326 15627453 -128159002 + L1MB2 LINE L1 6042 6171 0 565 237 0 66 chr12 15627453 15627512 -128158943 - Tigger6a DNA MER2_type -596 1001 940 881 145 0 22 chr12 15627512 15627650 -128158805 + FLAM_C SINE Alu 1 135 -8 3832 154 31 114 chr12 15627651 15628120 -128158335 - Tigger6a DNA MER2_type -647 950 443 2722 42 0 0 chr12 15628120 15628431 -128158024 - AluY SINE Alu 0 311 1 3832 154 31 114 chr12 15628431 15628928 -128157527 - Tigger6a DNA MER2_type -1154 443 -94 1876 133 25 0 chr12 15628928 15629207 -128157248 - AluSg SINE Alu -24 286 1 3832 154 31 114 chr12 15629207 15629239 -128157216 - Tigger6a DNA MER2_type -1691 4294967202 56 1547 198 144 5 chr12 15629239 15629649 -128156806 + MLT1C LTR MaLR 1 467 0 3832 154 31 114 chr12 15629649 15629701 -128156754 - Tigger6a DNA MER2_type -1540 57 2 31 0 0 0 chr12 15629709 15629740 -128156715 + AT_rich Low_complexity Low_complexity 1 31 0 2177 108 20 7 chr12 15629744 15630040 -128156415 - AluSg SINE Alu -10 300 1 22 0 0 0 chr12 15630488 15630510 -128155945 + AT_rich Low_complexity Low_complexity 1 22 0 2118 108 0 57 chr12 15630574 15630888 -128155567 - AluSg SINE Alu -12 298 3 2249 123 0 3 chr12 15630889 15631191 -128155264 - AluSx SINE Alu -11 301 1 2432 222 31 56 chr12 15631372 15631484 -128154971 + L1 LINE L1 2804 2917 -3229 1973 110 59 0 chr12 15631484 15631774 -128154681 + AluY SINE Alu 5 311 0 2432 222 31 56 chr12 15631774 15632636 -128153819 + L1 LINE L1 2917 3695 -2451 238 151 70 12 chr12 15632664 15632750 -128153705 + L1 LINE L1 3663 3753 -2393 1647 106 5 0 chr12 15632768 15632986 -128153469 + AluSq SINE Alu 3 221 -92 689 129 0 0 chr12 15632989 15633090 -128153365 - AluS SINE Alu -211 102 2 2220 84 20 13 chr12 15633101 15633399 -128153056 - AluSx SINE Alu -12 300 1 2348 85 13 0 chr12 15633481 15633788 -128152667 - AluY SINE Alu 0 311 1 2148 117 0 0 chr12 15634552 15634867 -128151588 - AluSg SINE Alu 0 315 1 650 347 48 3 chr12 15635268 15635620 -128150835 + ERVL LTR ERVL 4704 5071 -693 349 214 51 26 chr12 15635804 15635921 -128150534 + ERVL LTR ERVL 5261 5380 -384 746 225 41 103 chr12 15635980 15636042 -128150413 + MLT1J LTR MaLR 9 73 -438 1932 133 14 7 chr12 15636042 15636335 -128150120 - AluJb SINE Alu -17 295 1 746 225 41 103 chr12 15636335 15636543 -128149912 + MLT1J LTR MaLR 73 262 -249 920 124 16 0 chr12 15636691 15636820 -128149635 + AluSq/x SINE Alu 1 131 -181 1118 201 11 49 chr12 15636823 15637086 -128149369 + MLT1E3 LTR MaLR 372 624 0 1976 155 0 0 chr12 15637496 15637800 -128148655 - AluSx SINE Alu -8 304 1 2065 124 0 17 chr12 15637805 15638122 -128148333 - AluSx SINE Alu 0 312 1 789 224 54 85 chr12 15638273 15638532 -128147923 + MLT1J LTR MaLR 261 511 0 1782 164 28 3 chr12 15638807 15639093 -128147362 + AluJb SINE Alu 1 293 -19 897 230 123 109 chr12 15639195 15639674 -128146781 - MLT1D LTR MaLR 0 505 20 189 0 0 0 chr12 15639752 15639773 -128146682 + (TA)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr12 15639788 15639823 -128146632 + AT_rich Low_complexity Low_complexity 1 35 0 324 70 0 0 chr12 15639845 15639888 -128146567 + (TG)n Simple_repeat Simple_repeat 2 44 0 1055 127 0 7 chr12 15639889 15640039 -128146416 - AluSg/x SINE Alu -17 295 147 279 286 126 39 chr12 15640572 15640692 -128145763 + MIR SINE MIR 53 196 -66 2418 86 0 3 chr12 15640692 15640995 -128145460 + AluSg SINE Alu 1 302 -8 279 286 126 39 chr12 15640995 15641056 -128145399 + MIR SINE MIR 196 250 -12 239 204 0 0 chr12 15641175 15641219 -128145236 - MLT1A2 LTR MaLR 0 374 331 799 157 0 0 chr12 15641220 15641341 -128145114 + AluJo SINE Alu 1 121 -181 6095 135 150 99 chr12 15641341 15642951 -128143504 + pTR5 LTR ERV1 748 2438 0 988 175 68 0 chr12 15642952 15643129 -128143326 + AluJo SINE Alu 111 299 -13 1083 224 78 59 chr12 15643241 15643599 -128142856 - MLT1A1 LTR MaLR 0 365 1 347 89 0 0 chr12 15644664 15644709 -128141746 + Alu SINE Alu 1 45 -257 1294 92 0 6 chr12 15644709 15644882 -128141573 + AluSg/x SINE Alu 137 308 -4 2233 107 10 0 chr12 15645178 15645478 -128140977 + AluSx SINE Alu 1 303 -9 263 371 43 0 chr12 15645531 15645647 -128140808 + L2 LINE L2 3150 3270 -2 1445 143 103 8 chr12 15645725 15645977 -128140478 - AluJo SINE Alu -14 298 23 2308 148 8 23 chr12 15646003 15646408 -128140047 - L1MA5 LINE L1 -172 6012 5674 2162 89 0 18 chr12 15646408 15646690 -128139765 - AluSq SINE Alu -36 277 1 2308 148 8 23 chr12 15646690 15646705 -128139750 - L1MA5 LINE L1 -510 5674 5660 471 18 0 0 chr12 15646749 15646805 -128139650 + (TATG)n Simple_repeat Simple_repeat 2 57 0 2136 122 0 0 chr12 15646805 15647091 -128139364 - AluSx SINE Alu -26 286 1 1469 204 27 7 chr12 15647128 15647422 -128139033 + AluJo SINE Alu 6 305 -7 336 218 182 24 chr12 15647425 15647590 -128138865 - L1MC5 LINE L1 -510 7451 7261 2407 63 7 3 chr12 15647591 15647892 -128138563 - AluY SINE Alu -7 304 3 2331 91 3 0 chr12 15647895 15648191 -128138264 - AluSg SINE Alu -13 297 1 2527 57 0 16 chr12 15648654 15648970 -128137485 + AluY SINE Alu 1 311 0 545 343 164 18 chr12 15648980 15649365 -128137090 - MLT1K LTR MaLR -91 497 57 1165 315 83 12 chr12 15649365 15649907 -128136548 + MLT2E LTR ERVL 1 627 -1 1576 155 37 37 chr12 15649995 15650319 -128136136 + AluJo SINE Alu 1 312 0 2239 155 72 42 chr12 15650319 15650584 -128135871 + L1MA8 LINE L1 5777 6033 -258 2433 70 7 13 chr12 15650584 15650884 -128135571 + AluY SINE Alu 2 299 -12 2239 155 72 42 chr12 15650884 15650934 -128135521 + L1MA8 LINE L1 6033 6080 -211 2064 135 0 7 chr12 15650934 15651238 -128135217 + AluSx SINE Alu 1 302 -10 2239 155 72 42 chr12 15651238 15651418 -128135037 + L1MA8 LINE L1 6080 6288 -3 2427 45 41 7 chr12 15651434 15651724 -128134731 + AluY SINE Alu 1 300 -11 2445 83 0 0 chr12 15651779 15652080 -128134375 + AluY SINE Alu 6 306 -5 713 354 50 20 chr12 15652100 15652496 -128133959 + ERVL-E LTR ERVL 287 694 -5070 2941 88 23 5 chr12 15652600 15652997 -128133458 + MLT2A1 LTR ERVL 1 404 -40 272 97 21 69 chr12 15652997 15653141 -128133314 + (TA)n Simple_repeat Simple_repeat 1 137 0 396 42 0 0 chr12 15653151 15653199 -128133256 + MLT2A1 LTR ERVL 406 453 0 43920 75 8 10 chr12 15653199 15654196 -128132259 + HERVL-A1-A1 LTR ERVL 1 998 -4656 2246 110 7 7 chr12 15654196 15654496 -128131959 - AluSx SINE Alu -12 300 1 43920 75 8 10 chr12 15654496 15656789 -128129666 + HERVL-A1-A1 LTR ERVL 998 3294 -2360 2246 116 0 7 chr12 15656789 15657099 -128129356 - AluSg SINE Alu -2 308 1 43920 75 8 10 chr12 15657099 15659471 -128126984 + HERVL-A1-A1 LTR ERVL 3294 5654 0 2511 101 35 11 chr12 15659471 15659837 -128126618 + MLT2A1 LTR ERVL 1 375 -69 180 0 0 0 chr12 15659837 15659857 -128126598 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr12 15660039 15660060 -128126395 + AT_rich Low_complexity Low_complexity 1 21 0 344 56 33 22 chr12 15660060 15660120 -128126335 + MLT2A1 LTR ERVL 391 442 -2 1999 269 80 2 chr12 15660122 15660636 -128125819 + ERVL LTR ERVL 2940 3493 -2271 3230 269 71 25 chr12 15660686 15661725 -128124730 + ERVL LTR ERVL 3576 4662 -1102 2054 232 167 16 chr12 15661735 15662495 -128123960 - L1MCa LINE L1 -4489 1937 1063 2081 127 10 16 chr12 15662498 15662806 -128123649 - AluSx SINE Alu -6 306 1 2442 82 3 16 chr12 15662817 15663132 -128123323 - AluY SINE Alu 0 311 1 1884 128 0 66 chr12 15663202 15663337 -128123118 + AluSx SINE Alu 1 143 -181 2300 107 3 3 chr12 15663337 15663647 -128122808 + AluSg SINE Alu 1 310 0 1884 128 0 66 chr12 15663647 15663855 -128122600 + AluSx SINE Alu 143 324 0 1089 125 36 24 chr12 15663858 15664026 -128122429 + AluSg/x SINE Alu 127 296 -16 224 138 64 32 chr12 15664027 15664121 -128122334 + (TA)n Simple_repeat Simple_repeat 1 97 0 6716 78 30 34 chr12 15664863 15666102 -128120353 - L1PA12 LINE L1 0 6168 4931 644 277 78 102 chr12 15666106 15666648 -128119807 - HAL1 LINE L1 -167 2340 1819 2564 68 0 0 chr12 15666648 15666957 -128119498 - AluY SINE Alu -2 309 1 644 277 78 102 chr12 15666957 15667161 -128119294 - HAL1 LINE L1 -688 1819 1612 783 208 7 7 chr12 15667169 15667318 -128119137 - FRAM SINE Alu -26 150 2 662 249 82 85 chr12 15667322 15667639 -128118816 - HAL1 LINE L1 -880 1627 1312 1834 214 84 65 chr12 15667646 15668183 -128118272 + MLT2B3 LTR ERVL 1 547 -7 2296 91 3 0 chr12 15668263 15668574 -128117881 + AluSp SINE Alu 1 312 0 2376 89 0 0 chr12 15668576 15668868 -128117587 + AluSc SINE Alu 1 292 -17 3031 161 18 34 chr12 15668970 15669015 -128117440 - L1MB4 LINE L1 0 6180 6136 2241 126 0 3 chr12 15669015 15669325 -128117130 - AluSx SINE Alu -3 309 1 3031 161 18 34 chr12 15669325 15669901 -128116554 - L1MB4 LINE L1 -44 6136 5569 514 193 8 34 chr12 15669903 15670022 -128116433 - L1MB4 LINE L1 -660 5518 5403 477 225 40 46 chr12 15670027 15670178 -128116277 - L1MB4 LINE L1 -1616 4530 4381 2244 104 3 22 chr12 15670353 15670670 -128115785 + AluSx SINE Alu 1 311 -1 1436 214 92 32 chr12 15670723 15671280 -128115175 - Zaphod DNA AcHobo -189 3842 3253 1780 199 20 35 chr12 15671412 15671810 -128114645 + MSTD LTR MaLR 1 392 -4 3790 247 50 45 chr12 15671816 15672142 -128114313 + MSTD-int LTR MaLR 2 325 -1410 2519 108 27 14 chr12 15672142 15672512 -128113943 - THE1C LTR MaLR 0 375 1 10050 115 37 21 chr12 15672512 15673233 -128113222 - THE1C-int LTR MaLR 0 1580 872 1665 132 8 0 chr12 15673233 15673475 -128112980 - AluSq SINE Alu -19 294 51 10050 115 37 21 chr12 15673475 15673910 -128112545 - THE1C-int LTR MaLR -708 872 445 2214 96 13 23 chr12 15673910 15674212 -128112243 - AluSq SINE Alu -14 299 1 10050 115 37 21 chr12 15674212 15674610 -128111845 - THE1C-int LTR MaLR -1135 445 1 1997 104 45 117 chr12 15674610 15675013 -128111442 - THE1C LTR MaLR 0 375 2 3790 247 50 45 chr12 15675013 15675440 -128111015 + MSTD-int LTR MaLR 325 748 -987 189 0 0 0 chr12 15675440 15675461 -128110994 + (TCTCCC)n Simple_repeat Simple_repeat 6 26 0 7216 59 7 9 chr12 15675461 15676965 -128109490 + SVA Other Other 1 1386 0 3790 247 50 45 chr12 15676965 15677807 -128108648 + MSTD-int LTR MaLR 747 1625 -110 453 192 25 8 chr12 15677821 15677941 -128108514 + CT-rich Low_complexity Low_complexity 3 124 0 2223 102 6 6 chr12 15677941 15678254 -128108201 - AluSp SINE Alu 0 313 1 2254 105 0 0 chr12 15678558 15678862 -128107593 - AluSc SINE Alu -5 304 1 1047 176 21 0 chr12 15679034 15679222 -128107233 + AluSg/x SINE Alu 119 310 0 599 250 29 0 chr12 15679222 15679394 -128107061 + Zaphod DNA AcHobo 1119 1295 -2736 1707 183 45 53 chr12 15679394 15679609 -128106846 - MSTD LTR MaLR 0 396 184 2215 113 0 0 chr12 15679609 15679902 -128106553 - AluSg SINE Alu -17 293 1 1707 183 45 53 chr12 15679902 15680085 -128106370 - MSTD LTR MaLR -212 184 1 581 171 45 0 chr12 15680085 15680196 -128106259 - MSTD-int LTR MaLR 0 1735 1620 922 114 0 8 chr12 15680197 15680328 -128106127 + AluJb SINE Alu 4 133 -179 2420 94 0 0 chr12 15680330 15680638 -128105817 + AluY SINE Alu 1 308 -3 1503 195 128 137 chr12 15680927 15681569 -128104886 - MLT1E1 LTR MaLR 0 654 19 186 118 0 0 chr12 15681749 15681783 -128104672 + (CTA)n Simple_repeat Simple_repeat 2 35 0 350 274 87 149 chr12 15681790 15681889 -128104566 - MIR SINE MIR -10 252 148 2172 94 0 17 chr12 15681889 15682187 -128104268 - AluSg SINE Alu -17 293 1 1606 162 10 40 chr12 15682190 15682364 -128104091 - AluJb SINE Alu -10 302 124 207 0 0 0 chr12 15682364 15682387 -128104068 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2089 119 0 0 chr12 15682387 15682672 -128103783 - AluSx SINE Alu -27 285 1 1606 162 10 40 chr12 15682672 15682793 -128103662 - AluJb SINE Alu -186 126 15 350 274 87 149 chr12 15682793 15682930 -128103525 - MIR SINE MIR -116 146 27 2038 114 45 0 chr12 15683017 15683306 -128103149 - AluSq SINE Alu -11 302 1 191 354 92 0 chr12 15684062 15684127 -128102328 + L2 LINE L2 3243 3313 0 2156 121 10 3 chr12 15684350 15684656 -128101799 + AluSx SINE Alu 1 308 -4 2257 111 0 0 chr12 15684656 15684953 -128101502 + AluSg SINE Alu 1 297 -13 26 0 0 0 chr12 15685128 15685154 -128101301 + AT_rich Low_complexity Low_complexity 1 26 0 218 250 39 19 chr12 15685341 15685393 -128101062 + L2 LINE L2 3022 3074 -198 2270 82 0 29 chr12 15685396 15685702 -128100753 - AluSc SINE Alu -12 297 1 204 286 0 18 chr12 15685814 15685870 -128100585 + L2 LINE L2 3168 3222 -91 2149 113 0 22 chr12 15686012 15686330 -128100125 - AluSx SINE Alu -1 311 1 210 257 164 24 chr12 15686340 15686488 -128099967 - MIR SINE MIR -58 204 39 200 86 29 0 chr12 15687112 15687147 -128099308 + (CGG)n Simple_repeat Simple_repeat 3 38 0 300 237 129 50 chr12 15687321 15687460 -128098995 - L1M2 LINE L1 -6167 682 533 291 216 54 0 chr12 15689720 15689794 -128096661 - L1ME LINE L1 -254 5867 5790 249 302 24 41 chr12 15689797 15689966 -128096489 - L1ME LINE L1 -269 5852 5687 315 267 156 37 chr12 15690079 15690214 -128096241 - L1ME LINE L1 -2345 5463 5313 1384 209 20 30 chr12 15690381 15690677 -128095778 - AluJb SINE Alu -19 293 1 1670 149 62 0 chr12 15690772 15691061 -128095394 - AluSx SINE Alu -5 307 1 2322 88 7 0 chr12 15691364 15691660 -128094795 - AluSp SINE Alu -15 298 1 21 36 0 0 chr12 15692400 15692428 -128094027 + AT_rich Low_complexity Low_complexity 1 28 0 502 348 118 10 chr12 15694790 15695086 -128091369 - MLT1J LTR MaLR -183 328 1 21 0 0 0 chr12 15695244 15695265 -128091190 + AT_rich Low_complexity Low_complexity 1 21 0 1827 127 3 63 chr12 15695522 15695838 -128090617 - AluJo SINE Alu -15 297 1 204 200 0 0 chr12 15696957 15697012 -128089443 + A-rich Low_complexity Low_complexity 1 55 0 385 230 118 15 chr12 15697067 15697202 -128089253 + MIR SINE MIR 84 232 -30 930 120 0 0 chr12 15698240 15698365 -128088090 + AluSg/x SINE Alu 171 295 -15 1973 147 0 0 chr12 15698409 15698719 -128087736 - AluSx SINE Alu 0 310 1 1982 67 4 4 chr12 15698782 15699036 -128087419 - AluY SINE Alu -14 297 44 2070 114 6 44 chr12 15699036 15699350 -128087105 - AluSx SINE Alu -7 305 3 2344 107 0 0 chr12 15699513 15699822 -128086633 - AluSx SINE Alu -3 309 1 2817 245 144 57 chr12 15700382 15700452 -128086003 - HAL1 LINE L1 -629 1878 1816 2492 131 36 17 chr12 15700452 15700872 -128085583 + MSTA LTR MaLR 1 428 0 2817 245 144 57 chr12 15700872 15702041 -128084414 - HAL1 LINE L1 -691 1816 751 2141 122 10 0 chr12 15702041 15702344 -128084111 - AluSx SINE Alu -6 306 1 2817 245 144 57 chr12 15702344 15702662 -128083793 - HAL1 LINE L1 -1756 751 462 1809 157 7 3 chr12 15702662 15702955 -128083500 - AluSx SINE Alu -18 294 1 2817 245 144 57 chr12 15702955 15703032 -128083423 - HAL1 LINE L1 -2045 462 99 21 36 0 0 chr12 15703141 15703169 -128083286 + AT_rich Low_complexity Low_complexity 1 28 0 909 207 0 34 chr12 15703426 15703605 -128082850 + AluJb SINE Alu 86 258 -54 256 149 149 0 chr12 15704596 15704643 -128081812 - Tigger4(Zombi) DNA MER2_type -2679 52 -1 1475 171 20 47 chr12 15704988 15705286 -128081169 - AluJo SINE Alu -22 290 1 361 236 47 39 chr12 15705472 15705599 -128080856 - L1MC5 LINE L1 -44 7917 7790 760 143 0 0 chr12 15709432 15709558 -128076897 - AluSp/q SINE Alu -7 306 181 1638 111 0 0 chr12 15709558 15709774 -128076681 - AluSp SINE Alu -97 216 1 2264 108 0 0 chr12 15709776 15710071 -128076384 - AluSx SINE Alu -17 295 1 1822 163 24 0 chr12 15710071 15710360 -128076095 - AluSx SINE Alu -12 300 5 2464 56 13 0 chr12 15711044 15711348 -128075107 - AluSp SINE Alu -5 308 1 452 245 185 10 chr12 15711357 15711557 -128074898 + MER102b DNA MER1_type 91 325 -16 190 306 83 0 chr12 15712912 15712984 -128073471 + MIR SINE MIR 67 144 -118 182 281 47 31 chr12 15712996 15713060 -128073395 + MIR SINE MIR 20 84 -178 2185 99 3 0 chr12 15713139 15713445 -128073010 - AluSq SINE Alu 0 307 1 274 257 73 28 chr12 15713471 15713580 -128072875 + MIR SINE MIR 94 207 -55 251 270 180 42 chr12 15713932 15714121 -128072334 - L2 LINE L2 -8 3305 3091 833 250 117 4 chr12 15714135 15714383 -128072072 + MER5C DNA MER1_type 2 277 -47 30 0 0 0 chr12 15717232 15717262 -128069193 + AT_rich Low_complexity Low_complexity 1 30 0 2400 87 0 10 chr12 15718306 15718618 -128067837 + AluSq SINE Alu 4 312 -1 604 313 136 61 chr12 15718774 15719400 -128067055 - L3 LINE CR1 -2 1575 903 333 288 65 6 chr12 15719461 15719631 -128066824 - L1MDa LINE L1 -2838 3702 3523 510 305 138 29 chr12 15719660 15720037 -128066418 - L1MDa LINE L1 -3090 3450 3033 406 279 19 80 chr12 15720114 15720376 -128066079 - L1MDa LINE L1 -3706 2834 2589 420 289 77 51 chr12 15720629 15721061 -128065394 - L1MDa LINE L1 -869 2032 1633 376 346 108 9 chr12 15721732 15721946 -128064509 - MIR SINE MIR -10 252 18 319 311 155 27 chr12 15722012 15722485 -128063970 - L1MC/D LINE L1 -779 5367 5205 2120 125 0 3 chr12 15722618 15722921 -128063534 - AluSq SINE Alu -11 302 1 2165 101 14 0 chr12 15723139 15723436 -128063019 - AluSg SINE Alu -9 301 1 245 109 22 0 chr12 15723486 15723532 -128062923 + CT-rich Low_complexity Low_complexity 2 48 0 1855 186 3 3 chr12 15723540 15723852 -128062603 - AluJo SINE Alu 0 312 1 1855 135 42 3 chr12 15724033 15724322 -128062133 - AluSx SINE Alu -12 300 1 1948 157 0 13 chr12 15726828 15727141 -128059314 - AluJb SINE Alu -1 311 3 1972 127 7 0 chr12 15727524 15727823 -128058632 - AluSq SINE Alu -12 301 1 525 105 0 0 chr12 15728090 15728166 -128058289 - AluSg1 SINE Alu -13 297 222 1101 101 0 7 chr12 15728166 15728314 -128058141 - AluSg1 SINE Alu -160 149 3 220 220 0 0 chr12 15728783 15728833 -128057622 + T-rich Low_complexity Low_complexity 1 50 0 198 0 0 0 chr12 15728833 15728855 -128057600 + (GTTTG)n Simple_repeat Simple_repeat 3 24 0 198 261 0 0 chr12 15729200 15729246 -128057209 - L2 LINE L2 -5 3308 3263 234 0 0 0 chr12 15729541 15729567 -128056888 + (CA)n Simple_repeat Simple_repeat 1 26 0 1102 204 26 30 chr12 15731328 15731592 -128054863 - L1MB7 LINE L1 0 6184 5922 2726 195 39 36 chr12 15731592 15732169 -128054286 + Tigger7 DNA MER2_type 1 574 -2013 198 0 0 0 chr12 15732169 15732191 -128054264 + (TATG)n Simple_repeat Simple_repeat 2 23 0 2726 195 39 36 chr12 15732191 15732289 -128054166 + Tigger7 DNA MER2_type 574 2587 0 4686 195 45 31 chr12 15732289 15732834 -128053621 - L1MB7 LINE L1 -255 5923 5388 1054 49 0 28 chr12 15732834 15732978 -128053477 + L1PA7 LINE L1 6015 6154 0 4686 195 45 31 chr12 15732978 15734156 -128052299 - L1MB7 LINE L1 -790 5388 4165 2054 134 0 0 chr12 15734156 15734454 -128052001 + AluSx SINE Alu 1 298 -14 4686 195 45 31 chr12 15734454 15734666 -128051789 - L1MB7 LINE L1 -2013 4165 3958 24 32 0 0 chr12 15735342 15735373 -128051082 + AT_rich Low_complexity Low_complexity 1 31 0 464 304 34 34 chr12 15735394 15735542 -128050913 - MIR3 SINE MIR -24 184 37 353 242 34 153 chr12 15735701 15735792 -128050663 + MLT1I LTR MaLR 80 143 -266 1044 152 141 0 chr12 15735792 15735990 -128050465 - MER30 DNA MER1_type -1 229 4 353 242 34 153 chr12 15735990 15736107 -128050348 + MLT1I LTR MaLR 143 272 -137 629 212 8 15 chr12 15736360 15736492 -128049963 - FLAM_A SINE Alu -2 131 1 1155 194 0 15 chr12 15737188 15737394 -128049061 - MER2 DNA MER2_type -137 208 6 27 62 0 0 chr12 15739526 15739574 -128046881 + AT_rich Low_complexity Low_complexity 1 48 0 28 0 0 0 chr12 15740305 15740333 -128046122 + AT_rich Low_complexity Low_complexity 1 28 0 580 262 76 40 chr12 15740511 15740736 -128045719 - MIR SINE MIR -12 250 18 1609 224 91 37 chr12 15741447 15741772 -128044683 - MER90 LTR ERV1 -6 569 202 2448 75 0 0 chr12 15741772 15742077 -128044378 + AluY SINE Alu 1 305 -6 1609 224 91 37 chr12 15742077 15742291 -128044164 - MER90 LTR ERV1 -373 202 1 785 223 120 24 chr12 15742466 15742758 -128043697 - L1M4 LINE L1 -1986 4160 3841 1385 178 122 36 chr12 15742782 15743171 -128043284 - MLT1C LTR MaLR -56 411 1 234 337 0 12 chr12 15743268 15743351 -128043104 - L1M4 LINE L1 -2292 3854 3773 * 935 221 54 26 chr12 15743347 15743737 -128042718 + L1M4 LINE L1 2863 3263 -2883 405 0 0 0 chr12 15743737 15743782 -128042673 + (CA)n Simple_repeat Simple_repeat 2 46 0 4300 177 46 7 chr12 15743806 15744695 -128041760 - L1MB8 LINE L1 0 6178 5255 346 151 86 11 chr12 15744742 15744835 -128041620 - L1MB8 LINE L1 -873 5273 5174 216 0 0 0 chr12 15744999 15745023 -128041432 + (T)n Simple_repeat Simple_repeat 1 24 0 180 313 167 21 chr12 15747313 15747457 -128038998 + L2 LINE L2 2362 2526 -788 2036 134 10 0 chr12 15747969 15748275 -128038180 + AluJb SINE Alu 1 309 -3 1130 207 0 0 chr12 15748536 15748753 -128037702 - AluJo SINE Alu -1 311 95 2206 90 0 10 chr12 15748787 15749088 -128037367 - AluSg SINE Alu -12 298 1 692 222 123 6 chr12 15749102 15749273 -128037182 + L2 LINE L2 2410 2600 -714 337 202 11 75 chr12 15749240 15749334 -128037121 + L2 LINE L2 3226 3313 0 * 204 333 93 46 chr12 15749273 15749489 -128036966 - L2 LINE L2 -424 2890 2665 * 1435 237 89 59 chr12 15751356 15751884 -128034571 - L2 LINE L2 -1022 2292 1749 352 203 30 36 chr12 15751973 15752118 -128034337 - L1P LINE L1 -731 5420 5270 259 216 0 81 chr12 15752172 15752246 -128034209 + MER58A DNA MER1_type 35 102 -5 322 274 27 0 chr12 15752339 15752412 -128034043 + MER58A DNA MER1_type 149 223 -1 2313 94 0 0 chr12 15752820 15753117 -128033338 - AluY SINE Alu -13 298 2 2308 84 0 19 chr12 15754511 15754649 -128031806 + AluSq SINE Alu 1 140 -173 2138 122 0 0 chr12 15754649 15754945 -128031510 + AluSc SINE Alu 1 296 -13 2308 84 0 19 chr12 15754945 15755117 -128031338 + AluSq SINE Alu 140 305 -8 25 75 0 0 chr12 15755486 15755539 -128030916 + AT_rich Low_complexity Low_complexity 1 53 0 1591 193 0 7 chr12 15756228 15756508 -128029947 + AluJo SINE Alu 1 278 -34 318 127 42 0 chr12 15756521 15756592 -128029863 + GA-rich Low_complexity Low_complexity 2 75 0 271 264 23 58 chr12 15756654 15756741 -128029714 + MIR SINE MIR 20 103 -105 2089 128 0 0 chr12 15757834 15758145 -128028310 + AluSx SINE Alu 1 311 0 184 281 125 0 chr12 15758941 15759005 -128027450 + MER5C DNA MER1_type 1 72 -252 2657 10 0 0 chr12 15759196 15759489 -128026966 + AluYa5 SINE Alu 1 293 -18 2576 156 33 15 chr12 15759821 15760275 -128026180 - MLT1C LTR MaLR -4 463 2 240 364 49 28 chr12 15760705 15760848 -128025607 - MIR3 SINE MIR -62 146 1 1891 152 0 7 chr12 15760973 15761262 -128025193 + AluSx SINE Alu 1 287 -25 432 0 0 0 chr12 15761265 15761313 -128025142 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 25 0 0 0 chr12 15761826 15761851 -128024604 + AT_rich Low_complexity Low_complexity 1 25 0 4309 159 52 54 chr12 15762035 15762912 -128023543 - L1MB5 LINE L1 0 6174 5289 2360 63 10 10 chr12 15762912 15763213 -128023242 - AluY SINE Alu -10 301 1 4309 159 52 54 chr12 15763213 15763360 -128023095 - L1MB5 LINE L1 -885 5289 5143 1169 232 60 6 chr12 15763358 15763707 -128022748 - L1M4c LINE L1 -3911 2473 2106 * 2158 118 0 0 chr12 15764297 15764585 -128021870 + AluSx SINE Alu 1 288 -24 459 351 96 6 chr12 15764841 15765174 -128021281 + L1M4 LINE L1 3803 4165 -1981 363 335 138 18 chr12 15765215 15765555 -128020900 + L1M4 LINE L1 4258 4638 -1508 2313 94 3 0 chr12 15766415 15766713 -128019742 - AluSg SINE Alu -11 299 1 244 156 0 0 chr12 15766808 15766853 -128019602 - Alu SINE Alu 0 302 258 406 148 0 0 chr12 15766853 15766914 -128019541 - AluS SINE Alu -248 61 1 2382 97 0 0 chr12 15767562 15767872 -128018583 - AluSx SINE Alu -2 310 1 2145 119 10 0 chr12 15768703 15769005 -128017450 - AluSx SINE Alu -7 305 1 22 35 0 0 chr12 15769483 15769512 -128016943 + AT_rich Low_complexity Low_complexity 1 29 0 869 192 17 109 chr12 15769648 15769950 -128016505 - L1MD2 LINE L1 -56 6303 6030 6776 191 55 40 chr12 15769974 15772233 -128014222 - L1M3 LINE L1 -410 5585 3286 1154 161 124 5 chr12 15772238 15772456 -128013999 - AluSx SINE Alu -25 287 44 3629 257 68 35 chr12 15772456 15775054 -128011401 - L1M3 LINE L1 -2624 3346 634 2129 112 0 0 chr12 15775054 15775349 -128011106 - AluSq SINE Alu -18 295 1 3629 257 68 35 chr12 15775349 15775599 -128010856 - L1M3 LINE L1 -5336 634 394 263 346 47 34 chr12 15775942 15776176 -128010279 - L1M3 LINE L1 -5647 244 8 2066 105 10 23 chr12 15776321 15776626 -128009829 + AluSx SINE Alu 1 301 -11 1724 167 0 13 chr12 15777007 15777313 -128009142 - AluJo SINE Alu -10 302 1 286 259 0 0 chr12 15777578 15777636 -128008819 + L2 LINE L2 3256 3313 0 563 228 39 31 chr12 15778869 15778996 -128007459 + FLAM_A SINE Alu 2 129 -4 4498 191 61 82 chr12 15779055 15779237 -128007218 - Charlie1a DNA MER1_type -1307 1454 1270 2048 119 3 7 chr12 15779237 15779531 -128006924 + AluSx SINE Alu 1 293 -19 4498 191 61 82 chr12 15779531 15779970 -128006485 - Charlie1a DNA MER1_type -1491 1270 823 1643 181 0 3 chr12 15779970 15780262 -128006193 + AluJb SINE Alu 7 297 -15 4498 191 61 82 chr12 15780262 15781124 -128005331 - Charlie1a DNA MER1_type -1938 823 1 21 71 0 0 chr12 15781567 15781609 -128004846 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr12 15833184 15833219 -127953236 + AT_rich Low_complexity Low_complexity 1 35 0 631 187 45 32 chr12 15833341 15833496 -127952959 + MER103 DNA DNA 1 157 -9 482 83 0 0 chr12 15833582 15833642 -127952813 + AluJb SINE Alu 79 138 -174 315 230 26 44 chr12 15834550 15834663 -127951792 - MER103 DNA DNA -43 123 13 1181 129 56 35 chr12 15835816 15836048 -127950407 + L1MA8 LINE L1 6051 6287 -4 2125 114 41 6 chr12 15836768 15837085 -127949370 - MLT2A1 LTR ERVL -10 434 107 1268 103 71 0 chr12 15837083 15837267 -127949188 - MLT2A2 LTR ERVL -256 197 1 * 12911 74 21 2 chr12 15837267 15838933 -127947522 - HERVL-A2 LTR ERVL 0 5654 3958 * 23974 89 10 3 chr12 15838929 15842654 -127943801 - HERVL-A2 LTR ERVL -1798 3856 1 275 152 0 0 chr12 15842656 15842705 -127943750 - MLT2A1 LTR ERVL -6 447 390 2581 102 32 25 chr12 15842754 15843155 -127943300 - MLT2A1 LTR ERVL -40 404 1 42413 89 11 1 chr12 15843155 15848753 -127937702 - HERVL-A1 LTR ERVL 0 5654 1 332 122 0 0 chr12 15848755 15848804 -127937651 - MLT2A1 LTR ERVL -6 438 390 287 200 0 0 chr12 15848807 15848877 -127937578 + L1MC4 LINE L1 6640 6709 -1333 347 149 39 61 chr12 15848889 15849070 -127937385 + (TA)n Simple_repeat Simple_repeat 1 177 0 2828 71 22 51 chr12 15849095 15849155 -127937300 - MLT2A1 LTR ERVL -45 399 339 2274 115 0 0 chr12 15849155 15849460 -127936995 + AluSx SINE Alu 1 305 -7 2828 71 22 51 chr12 15849460 15849810 -127936645 - MLT2A1 LTR ERVL -105 339 1 869 282 49 51 chr12 15850269 15850659 -127935796 - HAL1 LINE L1 -589 1918 1530 2292 102 3 0 chr12 15853356 15853650 -127932805 - AluSq SINE Alu -18 295 1 1206 110 6 0 chr12 15854178 15854342 -127932113 + AluSp SINE Alu 132 296 -17 22 56 0 0 chr12 15855209 15855245 -127931210 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr12 15856752 15856779 -127929676 + AT_rich Low_complexity Low_complexity 1 27 0 192 97 0 0 chr12 15857033 15857064 -127929391 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 23 0 0 0 chr12 15857126 15857149 -127929306 + AT_rich Low_complexity Low_complexity 1 23 0 219 69 0 0 chr12 15857293 15857322 -127929133 + (TG)n Simple_repeat Simple_repeat 2 30 0 495 201 144 33 chr12 15857802 15858019 -127928436 - MLT1J2 LTR MaLR -174 276 23 2214 113 0 0 chr12 15858562 15858854 -127927601 - AluSq SINE Alu -21 292 1 474 286 174 15 chr12 15858987 15859183 -127927272 + MIR SINE MIR 34 260 -2 21 0 0 0 chr12 15859611 15859632 -127926823 + AT_rich Low_complexity Low_complexity 1 21 0 486 228 296 0 chr12 15859949 15860111 -127926344 + MER63A DNA MER1_type 1 210 0 533 268 132 24 chr12 15860331 15860536 -127925919 - MIR SINE MIR -11 251 25 203 348 98 9 chr12 15862059 15862171 -127924284 + MIR SINE MIR 20 141 -67 665 294 69 10 chr12 15862682 15862886 -127923569 + MIR SINE MIR 26 241 -21 1750 183 0 3 chr12 15862991 15863291 -127923164 + AluSx SINE Alu 1 299 -13 307 253 85 69 chr12 15863297 15863451 -127923004 - MIR SINE MIR -58 150 42 311 315 75 34 chr12 15863550 15863696 -127922759 + MIR SINE MIR 91 242 -20 239 203 174 14 chr12 15864228 15864297 -127922158 + L2 LINE L2 2596 2675 -639 647 255 65 10 chr12 15864431 15864631 -127921824 - MER46C DNA MER2_type -1 337 127 1770 108 27 12 chr12 15864654 15864912 -127921543 + AluSx SINE Alu 35 296 -16 359 226 122 70 chr12 15865114 15865229 -127921226 - MIR SINE MIR -122 140 20 191 280 240 10 chr12 15865368 15865468 -127920987 + L2 LINE L2 3142 3264 -8 2091 129 7 0 chr12 15866657 15866952 -127919503 - AluSx SINE Alu -15 297 1 1220 206 21 4 chr12 15867292 15867530 -127918925 + MLT1A1 LTR MaLR 122 363 -2 317 205 98 36 chr12 15867533 15867645 -127918810 + MER113 DNA MER1_type? 8 126 -395 470 186 25 17 chr12 15867679 15867797 -127918658 - L1MA7 LINE L1 -3 6288 6170 365 221 165 25 chr12 15868064 15868222 -127918233 + MIR3 SINE MIR 23 202 -6 2580 50 0 0 chr12 15868285 15868583 -127917872 - AluY SINE Alu -13 298 1 209 310 17 0 chr12 15868608 15868666 -127917789 - MER91 DNA MER1_type 0 196 138 884 143 0 0 chr12 15869247 15869373 -127917082 - FLAM_C SINE Alu -3 130 5 1812 84 98 40 chr12 15870275 15870550 -127915905 + AluSx SINE Alu 1 291 -21 2389 89 0 0 chr12 15870553 15870856 -127915599 + AluSg SINE Alu 1 303 -7 223 262 214 29 chr12 15870946 15871049 -127915406 + MER5B DNA MER1_type 22 143 -35 2117 125 0 0 chr12 15871261 15871556 -127914899 + AluSx SINE Alu 1 295 -17 1765 161 7 7 chr12 15871647 15871952 -127914503 - AluJo SINE Alu -7 305 1 209 270 0 127 chr12 15872341 15872403 -127914052 + MIR SINE MIR 150 190 -72 2297 107 0 16 chr12 15872403 15872720 -127913735 + AluSx SINE Alu 1 312 0 209 270 0 127 chr12 15872720 15872783 -127913672 + MIR SINE MIR 190 259 -3 232 295 26 0 chr12 15873207 15873285 -127913170 - L2 LINE L2 -2 3311 3232 224 306 56 14 chr12 15873314 15873386 -127913069 - L2 LINE L2 -167 3105 3031 345 293 113 58 chr12 15873511 15873667 -127912788 + L1ME LINE L1 928 1074 -5873 2053 167 55 39 chr12 15873667 15873843 -127912612 + MLT1B LTR MaLR 1 173 -217 2247 107 3 0 chr12 15873843 15874142 -127912313 + AluY SINE Alu 1 300 -11 2053 167 55 39 chr12 15874142 15874349 -127912106 + MLT1B LTR MaLR 173 390 0 345 293 113 58 chr12 15874349 15874592 -127911863 + L1ME LINE L1 1074 1349 -5598 288 290 33 90 chr12 15874746 15874991 -127911464 + L1ME LINE L1 1207 1437 -5510 1818 305 20 49 chr12 15874992 15875691 -127910764 + L1MA6 LINE L1 4 682 -6486 3011 213 72 20 chr12 15875987 15876733 -127909722 + L1MA6 LINE L1 1762 2546 -4622 8464 164 30 6 chr12 15876734 15878302 -127908153 + L1MA6 LINE L1 4380 5984 -1183 4148 147 18 3 chr12 15878302 15878957 -127907498 + L1MA6 LINE L1 6652 7321 0 646 170 0 0 chr12 15879044 15879156 -127907299 + L1MA6 LINE L1 6093 6204 -96 327 200 0 0 chr12 15879153 15879213 -127907242 - L1MA6 LINE L1 -61 6239 6180 * 930 262 38 65 chr12 15879211 15879485 -127906970 + L1ME LINE L1 1396 1676 -5281 2150 122 3 0 chr12 15879485 15879818 -127906637 + AluSq SINE Alu 1 295 -18 930 262 38 65 chr12 15879818 15880148 -127906307 + L1ME LINE L1 1676 2142 -4815 375 23 0 0 chr12 15880187 15880231 -127906224 + (CA)n Simple_repeat Simple_repeat 2 45 0 947 261 42 70 chr12 15880234 15880802 -127905653 + L1ME LINE L1 2579 3130 -4008 2355 95 3 0 chr12 15881195 15881499 -127904956 + AluSp SINE Alu 1 305 -8 2545 251 89 88 chr12 15882331 15883546 -127902909 + L1ME LINE L1 3082 4294 -2663 915 191 0 0 chr12 15883546 15883698 -127902757 + FRAM SINE Alu 1 145 -31 239 0 0 31 chr12 15883702 15883734 -127902721 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2545 251 89 88 chr12 15883734 15884442 -127902013 + L1ME LINE L1 4296 5166 -1791 1767 241 90 28 chr12 15884442 15884974 -127901481 + MLT1F1 LTR MaLR 1 565 -2 2545 251 89 88 chr12 15884974 15885195 -127901260 + L1ME LINE L1 5166 5385 -1572 212 0 36 0 chr12 15885499 15885527 -127900928 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1536 166 18 14 chr12 15886138 15886421 -127900034 - AluSx SINE Alu -15 297 14 1601 198 3 17 chr12 15888367 15888665 -127897790 + AluJo SINE Alu 1 294 -18 2451 58 3 0 chr12 15889038 15889332 -127897123 - AluY SINE Alu -2 309 15 293 267 89 10 chr12 15889708 15889809 -127896646 - L2 LINE L2 0 3313 3205 206 338 0 13 chr12 15889838 15889915 -127896540 + L2 LINE L2 3234 3309 -4 2021 134 0 10 chr12 15890518 15890823 -127895632 + AluSx SINE Alu 1 302 -10 2287 102 0 0 chr12 15891311 15891614 -127894841 + AluSx SINE Alu 1 303 -9 1074 201 53 5 chr12 15891793 15892002 -127894453 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr12 15892280 15892301 -127894154 + AT_rich Low_complexity Low_complexity 1 21 0 678 282 93 53 chr12 15892559 15892679 -127893776 - L1MC4a LINE L1 -1884 5924 5810 2104 112 3 3 chr12 15892679 15892998 -127893457 - AluSq SINE Alu 0 319 1 678 282 93 53 chr12 15892998 15893231 -127893224 - L1MC4a LINE L1 -1998 5810 5556 1949 130 18 0 chr12 15893248 15893549 -127892906 + AluSx SINE Alu 1 306 0 305 250 83 0 chr12 15893556 15893652 -127892803 - L1MC4a LINE L1 -2301 5507 5404 33 56 0 0 chr12 15893913 15893967 -127892488 + AT_rich Low_complexity Low_complexity 1 54 0 2113 140 0 0 chr12 15894008 15894301 -127892154 + AluSx SINE Alu 1 293 -19 236 186 82 52 chr12 15894333 15894430 -127892025 - L1MEd LINE L1 -4320 1809 1710 * 306 244 23 0 chr12 15894385 15894471 -127891984 + L1MC4 LINE L1 6615 6702 -1340 229 65 0 0 chr12 15894520 15894566 -127891889 - LTR66 LTR ERVL -171 439 394 232 48 48 0 chr12 15894595 15894637 -127891818 + (TA)n Simple_repeat Simple_repeat 1 44 0 1903 62 0 0 chr12 15897270 15897497 -127888958 + AluY SINE Alu 1 227 -84 23 33 0 0 chr12 15897500 15897530 -127888925 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr12 15897739 15897788 -127888667 + AT_rich Low_complexity Low_complexity 1 49 0 28 29 0 0 chr12 15897902 15897937 -127888518 + AT_rich Low_complexity Low_complexity 1 35 0 1903 132 7 30 chr12 15897942 15898246 -127888209 + AluSg SINE Alu 1 297 -13 440 319 86 41 chr12 15898344 15898689 -127887766 - L1MEd LINE L1 -790 1700 1372 2105 128 0 0 chr12 15898689 15898978 -127887477 - AluSx SINE Alu -23 289 1 440 319 86 41 chr12 15898978 15899494 -127886961 - L1MEd LINE L1 -1118 1372 689 225 132 0 0 chr12 15899509 15899547 -127886908 + (TC)n Simple_repeat Simple_repeat 2 39 0 1917 157 16 0 chr12 15900545 15900851 -127885604 + AluSx SINE Alu 1 311 -1 1049 209 47 14 chr12 15901038 15901249 -127885206 + MER20 DNA MER1_type 1 218 -1 2231 126 3 0 chr12 15901375 15901684 -127884771 - AluSx SINE Alu -2 310 1 387 0 0 0 chr12 15901685 15901728 -127884727 + (TG)n Simple_repeat Simple_repeat 2 44 0 236 403 104 13 chr12 15901919 15902073 -127884382 + MIR SINE MIR 2 169 -93 711 283 73 0 chr12 15902383 15902602 -127883853 + MIR SINE MIR 27 261 -1 2430 100 0 0 chr12 15902679 15902990 -127883465 + AluSx SINE Alu 1 311 -1 2161 114 3 0 chr12 15904174 15904472 -127881983 - AluSp SINE Alu -14 299 1 207 0 0 0 chr12 15904900 15904923 -127881532 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1166 168 10 20 chr12 15905050 15905102 -127881353 + AluJo SINE Alu 84 135 -171 2318 88 7 0 chr12 15905102 15905398 -127881057 + AluSp SINE Alu 1 298 -15 1166 168 10 20 chr12 15905398 15905570 -127880885 + AluJo SINE Alu 135 306 0 2111 117 7 0 chr12 15905587 15905877 -127880578 + AluSg SINE Alu 1 292 -18 823 182 0 8 chr12 15907124 15907256 -127879199 + AluJo SINE Alu 2 132 -180 950 160 21 0 chr12 15907386 15907530 -127878925 + AluJo SINE Alu 137 283 -19 1096 93 0 182 chr12 15908238 15908474 -127877981 - 7SK RNA RNA 0 193 1 294 292 52 0 chr12 15908984 15909080 -127877375 - L2 LINE L2 -6 3266 3166 205 331 160 14 chr12 15909080 15909367 -127877088 + L2 LINE L2 1776 2104 -1210 2061 106 3 3 chr12 15909761 15910071 -127876384 + AluSp SINE Alu 2 311 0 506 325 159 31 chr12 15910091 15910506 -127875949 + L2 LINE L2 2804 3271 -1 358 257 62 28 chr12 15910647 15910791 -127875664 - L2 LINE L2 -832 2482 2334 1218 144 6 0 chr12 15910882 15911062 -127875393 - AluSg/x SINE Alu -20 292 112 202 331 8 87 chr12 15911466 15911593 -127874862 + L2 LINE L2 3136 3252 -20 24 53 0 0 chr12 15911677 15911715 -127874740 + AT_rich Low_complexity Low_complexity 1 38 0 1514 163 4 4 chr12 15911736 15911994 -127874461 - AluSq SINE Alu -53 260 3 729 300 57 12 chr12 15912143 15912549 -127873906 + L1ME2 LINE L1 5422 5853 -311 1933 88 19 0 chr12 15912856 15913119 -127873336 - AluY SINE Alu -22 289 22 270 170 4 178 chr12 15913452 15913711 -127872744 + L1MA3 LINE L1 5837 6050 -255 957 89 0 0 chr12 15913840 15913963 -127872492 - AluSp SINE Alu -190 123 1 2172 111 3 16 chr12 15913997 15914304 -127872151 + AluSp SINE Alu 1 303 -10 5432 106 20 30 chr12 15914315 15915144 -127871311 + L1PA13 LINE L1 5343 6163 0 1603 113 0 0 chr12 15915126 15915355 -127871100 + L1P4 LINE L1 5594 5822 -346 * 203 0 37 0 chr12 15916612 15916639 -127869816 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 755 156 0 0 chr12 15916639 15916748 -127869707 - FRAM SINE Alu -28 148 40 28 0 0 0 chr12 15917095 15917123 -127869332 + AT_rich Low_complexity Low_complexity 1 28 0 2382 84 3 10 chr12 15917143 15917454 -127869001 - AluSp SINE Alu -4 309 1 283 256 91 16 chr12 15918060 15918181 -127868274 - LTR16C LTR ERVL -63 428 299 2237 98 3 7 chr12 15918853 15919150 -127867305 - AluSp SINE Alu -17 296 1 2049 135 3 7 chr12 15919471 15919774 -127866681 + AluSx SINE Alu 1 302 -10 1982 146 7 0 chr12 15920532 15920833 -127865622 + AluSx SINE Alu 1 303 -9 562 282 27 0 chr12 15920962 15921111 -127865344 - MIR SINE MIR -79 183 31 1098 214 159 31 chr12 15921251 15921508 -127864947 + AluJo SINE Alu 1 290 -12 1922 113 4 0 chr12 15922480 15922737 -127863718 + AluSx SINE Alu 3 260 -52 186 73 36 73 chr12 15922740 15922795 -127863660 + (TAAAAA)n Simple_repeat Simple_repeat 3 55 0 202 331 8 87 chr12 15922880 15923007 -127863448 - L2 LINE L2 -20 3252 3136 207 0 0 0 chr12 15923866 15923889 -127862566 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 262 260 125 10 chr12 15923980 15924084 -127862371 + MIR SINE MIR 60 175 -87 23 0 0 0 chr12 15924084 15924107 -127862348 + AT_rich Low_complexity Low_complexity 1 23 0 2069 101 10 3 chr12 15924109 15924405 -127862050 + AluSq SINE Alu 2 299 -14 21 36 0 0 chr12 15924839 15924867 -127861588 + GC_rich Low_complexity Low_complexity 1 28 0 234 192 0 0 chr12 15924907 15924959 -127861496 + (CAG)n Simple_repeat Simple_repeat 1 52 0 21 36 0 0 chr12 15924959 15924987 -127861468 + GC_rich Low_complexity Low_complexity 1 28 0 2381 49 7 0 chr12 15925891 15926201 -127860254 + AluY SINE Alu 1 312 0 683 193 0 0 chr12 15926518 15926632 -127859823 + FLAM_C SINE Alu 3 116 -17 23 0 0 0 chr12 15926632 15926655 -127859800 + AT_rich Low_complexity Low_complexity 1 23 0 390 155 190 92 chr12 15927094 15927236 -127859219 - L2 LINE L2 0 3313 3158 917 123 198 27 chr12 15927241 15927428 -127859027 - MER20 DNA MER1_type 0 219 1 3019 92 2 8 chr12 15927514 15928108 -127858347 + MER4A LTR ERV1 7 664 0 253 197 33 33 chr12 15928266 15928327 -127858128 + ERVL LTR ERVL 4911 4971 -793 2132 129 0 3 chr12 15928450 15928752 -127857703 + AluSx SINE Alu 5 305 -7 349 280 50 50 chr12 15928808 15928990 -127857465 + ERVL LTR ERVL 5206 5387 -267 861 117 8 16 chr12 15929105 15929233 -127857222 - FLAM_C SINE Alu -3 140 14 716 278 29 19 chr12 15929545 15929739 -127856716 - MLT1J2 LTR MaLR 0 450 255 618 184 37 22 chr12 15929739 15929875 -127856580 - MER119 DNA MER1_type 0 583 446 250 264 97 0 chr12 15929868 15929940 -127856515 - MER119 DNA MER1_type -449 134 56 * 25 31 0 0 chr12 15930115 15930147 -127856308 + AT_rich Low_complexity Low_complexity 1 32 0 2004 116 7 27 chr12 15930147 15930439 -127856016 - AluSx SINE Alu -26 286 1 281 252 19 84 chr12 15930455 15930610 -127855845 - MLT1J LTR MaLR -305 180 1 2140 118 0 0 chr12 15931392 15931700 -127854755 + AluSg SINE Alu 3 310 0 757 163 0 16 chr12 15931840 15931969 -127854486 + FLAM_C SINE Alu 1 127 -6 1532 184 7 39 chr12 15933010 15933126 -127853329 + AluJo SINE Alu 1 119 -193 186 43 0 0 chr12 15933126 15933149 -127853306 + (CA)n Simple_repeat Simple_repeat 2 24 0 1532 184 7 39 chr12 15933149 15933341 -127853114 + AluJo SINE Alu 119 299 -13 468 250 19 0 chr12 15934208 15934312 -127852143 + MER45 DNA AcHobo 3 108 -932 660 210 48 0 chr12 15934312 15934436 -127852019 - AluJb SINE Alu -52 260 131 285 102 0 0 chr12 15934471 15934520 -127851935 + Alu SINE Alu 252 300 0 2044 101 49 7 chr12 15935017 15935168 -127851287 - AluSg SINE Alu -10 300 157 180 0 0 0 chr12 15935168 15935188 -127851267 + (TA)n Simple_repeat Simple_repeat 1 20 0 2044 101 49 7 chr12 15935188 15935324 -127851131 - AluSg SINE Alu -153 157 1 2011 127 25 0 chr12 15935695 15935979 -127850476 + AluSx SINE Alu 1 291 -21 24 0 0 0 chr12 15935979 15936003 -127850452 + AT_rich Low_complexity Low_complexity 1 24 0 624 152 0 0 chr12 15936215 15936320 -127850135 + FRAM SINE Alu 68 172 -4 646 165 0 0 chr12 15936623 15936720 -127849735 - FLAM_A SINE Alu -44 98 2 25 0 0 0 chr12 15936765 15936790 -127849665 + AT_rich Low_complexity Low_complexity 1 25 0 2035 117 43 0 chr12 15936860 15937142 -127849313 - AluSx SINE Alu -18 294 1 1989 121 13 48 chr12 15937142 15937320 -127849135 - AluSx SINE Alu -9 303 139 1887 124 10 14 chr12 15937320 15937610 -127848845 - AluSq SINE Alu -24 289 1 1989 121 13 48 chr12 15937610 15937745 -127848710 - AluSx SINE Alu -173 139 1 640 179 60 7 chr12 15937797 15937948 -127848507 + MER76 LTR ERV 530 688 0 22 0 0 0 chr12 15937984 15938006 -127848449 + AT_rich Low_complexity Low_complexity 1 22 0 346 351 123 32 chr12 15938012 15938263 -127848192 - L2 LINE L2 -5 3267 2994 16372 126 43 55 chr12 15938353 15938825 -127847630 - Tigger3(Golem) DNA MER2_type 0 3029 2553 1911 125 36 4 chr12 15938825 15939104 -127847351 + AluSq SINE Alu 1 288 -25 207 0 0 0 chr12 15939107 15939130 -127847325 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 16372 126 43 55 chr12 15939130 15939641 -127846814 - Tigger3(Golem) DNA MER2_type -478 2551 2036 2184 118 0 3 chr12 15939641 15939945 -127846510 - AluSq SINE Alu -10 303 1 16372 126 43 55 chr12 15939945 15940694 -127845761 - Tigger3(Golem) DNA MER2_type -993 2036 1280 2120 113 30 3 chr12 15940694 15940994 -127845461 - AluSq SINE Alu -5 308 1 16372 126 43 55 chr12 15940994 15941385 -127845070 - Tigger3(Golem) DNA MER2_type -1749 1280 886 2168 111 3 0 chr12 15941385 15941674 -127844781 - AluSp SINE Alu -23 290 1 16372 126 43 55 chr12 15941674 15942264 -127844191 - Tigger3(Golem) DNA MER2_type -2143 886 347 2230 102 0 0 chr12 15942264 15942549 -127843906 - AluSx SINE Alu -27 285 1 16372 126 43 55 chr12 15942549 15942892 -127843563 - Tigger3(Golem) DNA MER2_type -2682 347 1 279 246 15 15 chr12 15942899 15942964 -127843491 - MER2 DNA MER2_type -1 344 280 1007 150 10 45 chr12 15942990 15943190 -127843265 - MER2 DNA MER2_type -134 211 19 305 276 46 0 chr12 15943213 15943300 -127843155 - L1MC4 LINE L1 -1339 6703 6613 264 234 0 0 chr12 15943301 15943365 -127843090 + (TA)n Simple_repeat Simple_repeat 2 65 0 310 221 0 63 chr12 15943372 15943467 -127842988 - L1MC4 LINE L1 -1340 6702 6614 282 292 0 0 chr12 15943473 15943651 -127842804 + (TA)n Simple_repeat Simple_repeat 2 179 0 314 276 46 0 chr12 15943657 15943744 -127842711 - L1MC4 LINE L1 -1339 6703 6613 345 297 0 0 chr12 15943765 15943856 -127842599 - L1MC4 LINE L1 -1339 6703 6613 363 241 46 0 chr12 15943869 15943956 -127842499 - L1MC4 LINE L1 -1339 6703 6613 261 226 26 0 chr12 15943959 15944074 -127842381 + (TA)n Simple_repeat Simple_repeat 1 118 0 2023 134 3 0 chr12 15944211 15944522 -127841933 + AluSx SINE Alu 1 312 0 1020 156 0 0 chr12 15944832 15944992 -127841463 - AluSg/x SINE Alu -13 299 140 1819 168 7 0 chr12 15945352 15945638 -127840817 - AluJb SINE Alu -24 288 1 707 176 0 16 chr12 15945652 15945777 -127840678 - FLAM_C SINE Alu -9 134 12 5656 142 100 40 chr12 15945913 15947118 -127839337 - MER52C LTR ERV1 0 1278 1 2004 103 0 0 chr12 15947363 15947625 -127838830 + AluSx SINE Alu 35 296 -16 187 211 0 0 chr12 15948260 15948298 -127838157 + MER5C DNA MER1_type 87 124 -200 312 168 84 42 chr12 15948321 15948416 -127838039 + MER5C DNA MER1_type 226 324 0 2162 101 10 3 chr12 15948428 15948725 -127837730 - AluSc SINE Alu -10 299 1 21 0 0 0 chr12 15949260 15949281 -127837174 + AT_rich Low_complexity Low_complexity 1 21 0 301 281 39 51 chr12 15949657 15949913 -127836542 - HAL1 LINE L1 -10 2497 2245 398 205 0 0 chr12 15950082 15950160 -127836295 - L1MD3 LINE L1 -348 7647 7570 1799 103 22 7 chr12 15950163 15950435 -127836020 - L1PA13 LINE L1 -3 6811 6536 18511 175 17 25 chr12 15950437 15950649 -127835806 - L1PA13 LINE L1 -458 6354 6142 2026 148 6 3 chr12 15950649 15950960 -127835495 - AluSx SINE Alu 0 312 1 18511 175 17 25 chr12 15950960 15951431 -127835024 - L1PA13 LINE L1 -670 6142 5669 2163 120 0 10 chr12 15951431 15951739 -127834716 + AluSx SINE Alu 1 305 -7 18511 175 17 25 chr12 15951739 15952323 -127834132 - L1PA13 LINE L1 -1143 5669 5082 2072 140 14 0 chr12 15952323 15952615 -127833840 - AluSx SINE Alu -16 296 1 18511 175 17 25 chr12 15952615 15955927 -127830528 - L1PA13 LINE L1 -1730 5082 1817 2294 125 0 0 chr12 15955927 15956231 -127830224 - AluSx SINE Alu 0 312 9 18511 175 17 25 chr12 15956231 15956299 -127830156 - L1PA13 LINE L1 -4995 1817 1750 1499 151 34 0 chr12 15956294 15956532 -127829923 - L1PA13 LINE L1 -6540 247 2 * 3366 233 60 42 chr12 15956543 15957218 -127829237 - L1MC4a LINE L1 -404 7404 6742 1650 154 39 51 chr12 15957218 15957530 -127828925 + AluJb SINE Alu 1 308 -4 3366 233 60 42 chr12 15957530 15958230 -127828225 - L1MC4a LINE L1 -1066 6742 6035 1844 180 0 10 chr12 15958230 15958541 -127827914 - AluJb SINE Alu -2 310 3 3366 233 60 42 chr12 15958541 15958743 -127827712 - L1MC4a LINE L1 -1773 6035 5838 6332 213 70 8 chr12 15958766 15961132 -127825323 - L1MA4 LINE L1 -5 6295 3602 183 42 0 0 chr12 15961132 15961156 -127825299 + (TGG)n Simple_repeat Simple_repeat 3 26 0 6332 213 70 8 chr12 15961156 15961920 -127824535 - L1MA4 LINE L1 -2698 3602 2887 1072 282 59 14 chr12 15961920 15962410 -127824045 - L1ME1 LINE L1 -316 6244 5733 830 249 76 30 chr12 15962499 15963019 -127823436 - L1ME1 LINE L1 -4467 2136 1446 * 993 180 15 0 chr12 15963018 15963224 -127823231 - L1 LINE L1 -1193 4953 4745 315 265 42 21 chr12 15963223 15963412 -127823043 - L1ME1 LINE L1 -4954 1586 1394 * 1062 135 11 0 chr12 15963438 15963623 -127822832 - L1M2 LINE L1 -691 7028 6842 12588 197 40 58 chr12 15963656 15963803 -127822652 - L1M2 LINE L1 -746 6819 6671 243 0 0 0 chr12 15963803 15963830 -127822625 + (TG)n Simple_repeat Simple_repeat 2 28 0 12588 197 40 58 chr12 15963830 15967074 -127819381 - L1M2 LINE L1 -894 6671 3783 2284 123 3 0 chr12 15967074 15967376 -127819079 - AluSx SINE Alu -9 303 1 12588 197 40 58 chr12 15967376 15968931 -127817524 - L1M2 LINE L1 -3782 3783 2202 399 412 15 0 chr12 15969198 15969470 -127816985 - L1M2 LINE L1 -5797 1699 1424 191 288 119 0 chr12 15970621 15970680 -127815775 - L2 LINE L2 -49 3223 3158 210 176 40 14 chr12 15972807 15972881 -127813574 + (TA)n Simple_repeat Simple_repeat 2 77 0 429 322 47 6 chr12 15973246 15973417 -127813038 - MER5A DNA MER1_type -1 188 11 1967 161 77 20 chr12 15974116 15974519 -127811936 + MSTB LTR MaLR 1 426 0 203 327 73 74 chr12 15974928 15975191 -127811264 - MIR3 SINE MIR 0 262 1 1588 192 7 33 chr12 15975442 15975749 -127810706 + AluJo SINE Alu 1 299 -13 1689 173 0 0 chr12 15975774 15976046 -127810409 + AluJo SINE Alu 37 308 -4 886 208 126 95 chr12 15977358 15977747 -127808708 + MER57B LTR ERV1 3 434 0 532 305 40 30 chr12 15980250 15980450 -127806005 - MIR3 SINE MIR 0 208 7 1914 154 133 13 chr12 15980829 15981211 -127805244 + MSTA LTR MaLR 1 428 0 2371 95 0 0 chr12 15981378 15981674 -127804781 + AluSq SINE Alu 1 296 -17 31 0 0 0 chr12 15981674 15981705 -127804750 + AT_rich Low_complexity Low_complexity 1 31 0 268 237 87 11 chr12 15982411 15982506 -127803949 + MIR SINE MIR 5 106 -102 2286 89 0 20 chr12 15982547 15982851 -127803604 - AluY SINE Alu -12 299 2 375 253 53 21 chr12 15983126 15983279 -127803176 + L1ME LINE L1 5244 5403 -743 1959 113 67 0 chr12 15983279 15983561 -127802894 + AluSx SINE Alu 3 303 -9 578 255 80 12 chr12 15983641 15983892 -127802563 + L1ME LINE L1 5537 5804 -317 330 249 6 133 chr12 15984449 15984614 -127801841 + MER5A DNA MER1_type 18 161 -28 202 270 6 126 chr12 15984467 15984641 -127801814 - MER5A DNA MER1_type -19 170 18 * 845 189 35 0 chr12 15984722 15984891 -127801564 + MER5B DNA MER1_type 1 175 -3 539 321 64 5 chr12 15985155 15985342 -127801113 - MIR3 SINE MIR -7 201 4 205 311 160 8 chr12 15985513 15985632 -127800823 + MER5A DNA MER1_type 43 179 -10 4434 63 51 5 chr12 15986282 15986889 -127799566 + PABL_A LTR ERV1 26 660 0 308 245 19 38 chr12 15986946 15987052 -127799403 - MER5B DNA MER1_type -3 175 72 589 149 9 0 chr12 15987061 15987168 -127799287 + MER53 DNA DNA 1 108 -81 194 224 52 35 chr12 15987172 15987230 -127799225 - MER5B DNA MER1_type -113 65 7 1926 171 9 6 chr12 15987606 15987946 -127798509 - MER2 DNA MER2_type -2 342 2 7654 23 11 0 chr12 15988450 15989582 -127796873 - L1PA3 LINE L1 0 6155 5019 14291 154 39 17 chr12 15989899 15994026 -127792429 + L1MA4A LINE L1 841 5139 -1866 2110 105 0 14 chr12 15994026 15994321 -127792134 + AluSx SINE Alu 1 291 -21 14291 154 39 17 chr12 15994321 15996208 -127790247 + L1MA4A LINE L1 5139 6983 -22 2151 106 0 26 chr12 15996229 15996541 -127789914 + AluSx SINE Alu 1 304 -8 1261 238 139 26 chr12 15996612 15997065 -127789390 + MLT1D LTR MaLR 1 504 -1 1886 143 19 19 chr12 15997404 15997712 -127788743 + AluJb SINE Alu 5 312 0 209 300 62 25 chr12 15997816 15997896 -127788559 + L2 LINE L2 3189 3271 -1 208 296 19 0 chr12 15998737 15998791 -127787664 + L2 LINE L2 3255 3309 -4 2276 103 0 0 chr12 15998876 15999167 -127787288 + AluSg SINE Alu 1 291 -19 35 0 0 0 chr12 15999185 15999220 -127787235 + AT_rich Low_complexity Low_complexity 1 35 0 365 303 0 0 chr12 16000428 16000517 -127785938 + MIR3 SINE MIR 113 201 -7 187 290 129 32 chr12 16001219 16001312 -127785143 + MIR SINE MIR 59 160 -102 1080 106 0 95 chr12 16001428 16001607 -127784848 + AluSg/x SINE Alu 143 304 -8 1076 146 12 0 chr12 16001960 16002125 -127784330 - AluSg/x SINE Alu -9 303 137 534 176 77 94 chr12 16002221 16002391 -127784064 - MIR SINE MIR 0 262 96 1986 134 0 0 chr12 16003044 16003355 -127783100 - AluSx SINE Alu 0 311 1 241 211 101 9 chr12 16003852 16003961 -127782494 - L1ME4a LINE L1 -125 5996 5878 246 293 236 28 chr12 16003988 16004306 -127782149 - L2 LINE L2 0 3313 2930 368 192 85 67 chr12 16004676 16004854 -127781601 + MER63 DNA MER1_type 27 1062 0 21 36 0 0 chr12 16004959 16004987 -127781468 + AT_rich Low_complexity Low_complexity 1 28 0 395 261 57 90 chr12 16005056 16005162 -127781293 - L1M4 LINE L1 -1820 4326 4218 2062 113 0 3 chr12 16005162 16005479 -127780976 - AluSg SINE Alu 0 316 1 395 261 57 90 chr12 16005479 16005518 -127780937 - L1M4 LINE L1 -1928 4218 4179 2293 138 43 36 chr12 16005518 16005960 -127780495 + MER65A LTR ERV1 1 445 0 395 261 57 90 chr12 16005960 16006023 -127780432 - L1M4 LINE L1 -1967 4179 4123 299 333 54 0 chr12 16006269 16006380 -127780075 + L2 LINE L2 2958 3074 -239 405 269 145 16 chr12 16006700 16006893 -127779562 + L1M4 LINE L1 3693 3910 -2236 21 0 0 0 chr12 16007112 16007133 -127779322 + AT_rich Low_complexity Low_complexity 1 21 0 2277 99 0 0 chr12 16007473 16007765 -127778690 - AluSc SINE Alu -17 292 1 336 215 83 83 chr12 16009316 16009376 -127777079 + L2 LINE L2 3170 3229 -84 2069 136 0 7 chr12 16009376 16009694 -127776761 - AluSx SINE Alu 0 312 1 336 215 83 83 chr12 16009694 16009777 -127776678 + L2 LINE L2 3228 3313 0 243 192 19 0 chr12 16009777 16009829 -127776626 + GA-rich Low_complexity Low_complexity 1 53 0 346 301 16 72 chr12 16010687 16010880 -127775575 - Charlie8 DNA MER1_type -2235 182 1 188 388 41 0 chr12 16010971 16011069 -127775386 + MIR SINE MIR 160 261 -1 858 250 130 61 chr12 16012066 16012442 -127774013 + MER57A LTR ERV1 1 403 0 364 224 60 17 chr12 16013125 16013241 -127773214 + MIR SINE MIR 72 192 -70 1902 121 80 3 chr12 16014042 16014355 -127772100 - MER1B DNA MER1_type 0 337 1 2026 114 59 31 chr12 16014715 16015039 -127771416 + MER1B DNA MER1_type 5 337 0 395 300 53 60 chr12 16015047 16015427 -127771028 - L1ME LINE L1 -524 5638 5262 369 291 137 11 chr12 16015428 16015610 -127770845 - L1ME LINE L1 -885 5261 5057 1973 146 3 0 chr12 16015614 16015908 -127770547 + AluSx SINE Alu 1 295 -17 206 103 0 26 chr12 16016063 16016102 -127770353 + (TATAA)n Simple_repeat Simple_repeat 5 42 0 2307 93 7 3 chr12 16016262 16016562 -127769893 - AluSg SINE Alu -9 301 1 549 317 35 25 chr12 16017581 16017783 -127768672 + MIR3 SINE MIR 2 205 -3 376 262 0 99 chr12 16017894 16018042 -127768413 - MIR SINE MIR -72 136 3 28 0 0 0 chr12 16018384 16018412 -127768043 + AT_rich Low_complexity Low_complexity 1 28 0 2029 138 21 0 chr12 16018661 16018952 -127767503 - AluSx SINE Alu -15 297 1 2247 98 7 7 chr12 16019613 16019918 -127766537 + AluSx SINE Alu 1 305 -7 260 217 70 26 chr12 16020288 16020403 -127766052 + HAL1 LINE L1 2240 2359 -148 2224 109 3 3 chr12 16020500 16020802 -127765653 - AluSq SINE Alu -11 302 1 205 254 73 91 chr12 16020918 16021028 -127765427 + L2 LINE L2 3189 3296 -17 210 286 0 0 chr12 16021456 16021505 -127764950 + (CCA)n Simple_repeat Simple_repeat 1 49 0 33 43 0 0 chr12 16021698 16021745 -127764710 + AT_rich Low_complexity Low_complexity 1 47 0 231 343 97 22 chr12 16021910 16022044 -127764411 - MIR3 SINE MIR -11 197 54 321 26 0 0 chr12 16022067 16022105 -127764350 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 2217 93 0 13 chr12 16022155 16022457 -127763998 + AluSg SINE Alu 5 302 -8 280 341 127 16 chr12 16022466 16022882 -127763573 - L2 LINE L2 -240 3032 2575 * 340 258 113 21 chr12 16022872 16022969 -127763486 + L2 LINE L2 3207 3312 -1 1960 204 27 94 chr12 16023088 16023672 -127762783 - LTR9 LTR ERV1 0 612 75 2237 108 0 6 chr12 16023672 16023986 -127762469 + AluSx SINE Alu 1 312 0 1960 204 27 94 chr12 16023986 16024057 -127762398 - LTR9 LTR ERV1 -537 75 1 509 16 0 0 chr12 16024218 16024279 -127762176 + L1P1 LINE L1 5519 5579 -576 678 221 145 7 chr12 16024925 16025214 -127761241 - L1ME4a LINE L1 -17 6104 5776 1938 142 6 55 chr12 16025214 16025403 -127761052 - AluJo SINE Alu -3 309 141 2242 105 0 0 chr12 16025403 16025688 -127760767 - AluSg SINE Alu -25 285 1 1938 142 6 55 chr12 16025688 16025823 -127760632 - AluJo SINE Alu -171 141 1 1912 166 3 34 chr12 16026415 16026735 -127759720 - AluJb SINE Alu -2 310 1 247 284 45 11 chr12 16027317 16027405 -127759050 - MIR3 SINE MIR -33 175 85 1739 106 31 7 chr12 16027736 16028028 -127758427 + THE1A LTR MaLR 1 299 -56 2234 78 10 0 chr12 16028058 16028364 -127758091 - THE1A LTR MaLR -46 309 1 1711 116 0 0 chr12 16028432 16028657 -127757798 - AluSx SINE Alu -87 225 1 291 333 7 41 chr12 16030504 16030651 -127755804 + MIR SINE MIR 7 148 -114 511 270 81 27 chr12 16030711 16030896 -127755559 - MIR SINE MIR -1 261 67 2181 110 13 7 chr12 16032147 16032457 -127753998 + AluSx SINE Alu 1 312 0 239 250 18 0 chr12 16033542 16033598 -127752857 + MER94 DNA DNA 78 134 0 31 44 0 0 chr12 16034022 16034067 -127752388 + AT_rich Low_complexity Low_complexity 1 45 0 321 260 77 10 chr12 16034626 16034730 -127751725 + L2 LINE L2 3181 3291 -22 2303 99 0 28 chr12 16034777 16035099 -127751356 - AluSq SINE Alu 0 313 1 794 194 0 8 chr12 16035210 16035334 -127751121 - FLAM_A SINE Alu -10 123 1 368 307 45 40 chr12 16035334 16035536 -127750919 - MIR SINE MIR -11 251 49 884 163 0 15 chr12 16036450 16036585 -127749870 - FLAM_C SINE Alu 0 133 1 292 248 158 65 chr12 16037134 16037316 -127749139 - MIR3 SINE MIR -1 207 2 1032 81 0 7 chr12 16037892 16038028 -127748427 - L1PB1 LINE L1 -2 6149 6015 2405 119 5 39 chr12 16039395 16039781 -127746674 + THE1C LTR MaLR 1 373 -2 222 171 24 0 chr12 16040643 16040684 -127745771 - L2 LINE L2 -8 3264 3223 * 234 208 21 0 chr12 16040650 16040698 -127745757 - MIR SINE MIR -10 252 204 217 257 135 14 chr12 16040873 16040947 -127745508 + L2 LINE L2 3189 3271 -1 656 114 0 50 chr12 16041743 16041883 -127744572 + (TTCC)n Simple_repeat Simple_repeat 1 133 0 1457 204 6 22 chr12 16041883 16042196 -127744259 - AluJo SINE Alu -4 308 1 185 275 100 38 chr12 16042290 16042370 -127744085 + L2 LINE L2 3170 3254 -18 214 198 81 47 chr12 16042888 16042974 -127743481 - MIR SINE MIR -39 223 135 188 288 0 15 chr12 16044432 16044498 -127741957 + MER5A DNA MER1_type 97 161 -28 1950 153 3 3 chr12 16044557 16044857 -127741598 + AluJb SINE Alu 1 300 -12 183 188 0 0 chr12 16045448 16045496 -127740959 + CT-rich Low_complexity Low_complexity 1 48 0 571 221 0 15 chr12 16045496 16045627 -127740828 - L1MB7 LINE L1 -10 6174 6046 252 216 0 0 chr12 16045818 16045869 -127740586 - MIR SINE MIR -6 256 206 1705 271 104 12 chr12 16045941 16046662 -127739793 - L2 LINE L2 -239 3074 2281 2417 84 3 0 chr12 16047752 16048060 -127738395 - AluY SINE Alu -2 309 1 285 309 36 18 chr12 16048092 16048202 -127738253 + MIR SINE MIR 35 146 -62 267 198 86 49 chr12 16048993 16049074 -127737381 + MIR3 SINE MIR 84 167 -41 * 671 282 19 19 chr12 16049065 16049278 -127737177 - MIR SINE MIR -18 244 32 2011 192 54 54 chr12 16049297 16049785 -127736670 + Charlie1b DNA MER1_type 1 491 -2270 2338 102 0 3 chr12 16049785 16050088 -127736367 + AluSp SINE Alu 1 302 -11 2011 192 54 54 chr12 16050088 16050121 -127736334 + Charlie1b DNA MER1_type 490 522 -1 381 324 22 7 chr12 16050990 16051126 -127735329 - MIR SINE MIR -119 143 6 216 274 16 0 chr12 16051158 16051220 -127735235 + (CAA)n Simple_repeat Simple_repeat 2 64 0 500 331 28 12 chr12 16051220 16051474 -127734981 - MIR SINE MIR -3 259 2 216 326 188 7 chr12 16051555 16051699 -127734756 + MIR SINE MIR 81 250 -12 208 382 65 8 chr12 16051697 16051820 -127734635 - MIR3 SINE MIR -76 132 3 * 21 0 0 0 chr12 16052516 16052537 -127733918 + AT_rich Low_complexity Low_complexity 1 21 0 1687 61 0 0 chr12 16052643 16052840 -127733615 + AluY SINE Alu 105 301 -10 832 174 8 0 chr12 16053044 16053176 -127733279 - FLAM_C SINE Alu 0 133 1 955 56 0 31 chr12 16054140 16054301 -127732154 + (TA)n Simple_repeat Simple_repeat 1 156 0 7562 51 10 0 chr12 16054301 16055231 -127731224 - L1PA7 LINE L1 -19 6135 5204 2487 57 0 25 chr12 16055368 16055720 -127730735 - AluY SINE Alu 0 345 2 571 311 83 14 chr12 16055842 16056305 -127730150 - L2 LINE L2 -199 3073 2561 347 89 0 54 chr12 16056335 16056391 -127730064 + AluJo/FLAM SINE Alu 81 133 -169 1672 181 0 30 chr12 16056393 16056696 -127729759 + AluJo SINE Alu 1 294 -18 347 326 144 6 chr12 16056710 16056891 -127729564 - L2 LINE L2 -786 2528 2323 327 357 67 8 chr12 16057546 16057784 -127728671 - L2 LINE L2 -2532 782 531 22 0 0 0 chr12 16057799 16057821 -127728634 + AT_rich Low_complexity Low_complexity 1 22 0 186 339 16 16 chr12 16058436 16058498 -127727957 - MIR SINE MIR -131 77 16 1207 193 10 82 chr12 16058891 16059196 -127727259 + MLT1A2 LTR MaLR 2 284 -90 476 139 0 47 chr12 16059465 16059551 -127726904 + MLT1A2 LTR MaLR 284 365 0 2266 120 0 3 chr12 16059598 16059906 -127726549 + AluSx SINE Alu 1 307 -5 2347 79 6 13 chr12 16060591 16060906 -127725549 + AluSq SINE Alu 1 313 0 21 0 0 0 chr12 16061067 16061088 -127725367 + AT_rich Low_complexity Low_complexity 1 21 0 519 183 0 0 chr12 16061228 16061310 -127725145 + AluJ/FLAM SINE Alu 6 87 -225 2380 81 0 0 chr12 16061514 16061821 -127724634 + AluY SINE Alu 1 307 -4 326 269 157 0 chr12 16061888 16061996 -127724459 - L2 LINE L2 -1 3312 3188 2494 152 34 7 chr12 16062230 16062637 -127723818 - MSTB LTR MaLR 0 426 9 3591 44 0 70 chr12 16062640 16063122 -127723333 - LTR7 LTR ERV1 -2 448 1 2449 84 50 16 chr12 16063122 16063501 -127722954 - HERVH LTR ERV1 0 7713 7322 1364 119 20 0 chr12 16063499 16063700 -127722755 - HERVH LTR ERV1 -1894 5819 5615 * 2504 175 0 2 chr12 16063728 16064139 -127722316 - HERVH LTR ERV1 -2564 5149 4740 999 149 0 7 chr12 16064138 16064292 -127722163 - HERVH LTR ERV1 -4069 3644 3492 * 874 131 41 0 chr12 16064282 16064427 -127722028 - HERVH LTR ERV1 -4423 3290 3140 * 20819 88 21 13 chr12 16064406 16067376 -127719079 - HERVH LTR ERV1 -4718 2995 1 3629 39 0 70 chr12 16067378 16067860 -127718595 - LTR7 LTR ERV1 -2 448 1 287 337 0 11 chr12 16068747 16068842 -127717613 + MIR SINE MIR 48 141 -121 218 160 0 100 chr12 16069457 16069507 -127716948 + MIR SINE MIR 218 262 0 2690 62 103 0 chr12 16070191 16070530 -127715925 + MER51B LTR ERV1 4 377 0 1880 229 31 84 chr12 16071516 16072158 -127714297 - LTR9 LTR ERV1 0 612 5 473 173 135 0 chr12 16072280 16072384 -127714071 - Charlie1a DNA MER1_type -912 543 426 481 157 10 59 chr12 16072389 16072456 -127713999 - Charlie1a DNA MER1_type -2524 237 175 5160 88 23 42 chr12 16072456 16072594 -127713861 - LTR30 LTR ERV1 0 722 583 2511 54 0 10 chr12 16072594 16072908 -127713547 + AluY SINE Alu 1 311 0 5160 88 23 42 chr12 16072908 16073505 -127712950 - LTR30 LTR ERV1 -139 583 1 481 157 10 59 chr12 16073505 16073539 -127712916 - Charlie1a DNA MER1_type -2586 175 141 1768 132 16 76 chr12 16073539 16073904 -127712551 - MER4A LTR ERV1 0 664 263 561 111 89 0 chr12 16073904 16073994 -127712461 - MER4A LTR ERV1 -566 98 1 506 252 54 34 chr12 16073994 16074130 -127712325 - Charlie1a DNA MER1_type -1315 140 2 471 281 278 7 chr12 16074214 16074516 -127711939 + L2 LINE L2 2930 3313 0 1048 255 47 100 chr12 16074860 16075586 -127710869 - L1M4 LINE L1 -1571 4575 3923 2000 134 0 17 chr12 16075586 16075885 -127710570 - AluSx SINE Alu -14 298 5 1048 255 47 100 chr12 16075885 16076235 -127710220 - L1M4 LINE L1 -2223 3923 3556 255 252 100 43 chr12 16076246 16076456 -127709999 + L1M4 LINE L1 5084 5305 -841 418 236 29 81 chr12 16076617 16076661 -127709794 - L1MC/D LINE L1 -2262 5940 5895 1695 166 48 20 chr12 16076661 16076956 -127709499 - AluJo SINE Alu -9 303 1 418 236 29 81 chr12 16076956 16077085 -127709370 - L1MC/D LINE L1 -2307 5895 5776 28 0 0 0 chr12 16077114 16077142 -127709313 + AT_rich Low_complexity Low_complexity 1 28 0 670 298 90 2 chr12 16077150 16077521 -127708934 - L1M4 LINE L1 -4768 2978 2428 804 209 44 18 chr12 16077526 16077540 -127708915 - L1MC/D LINE L1 -1438 5102 5090 1586 152 11 19 chr12 16077540 16077803 -127708652 - L1PA16 LINE L1 -4 6162 5902 804 209 44 18 chr12 16077803 16078013 -127708442 - L1MC/D LINE L1 -1450 5090 4872 * 5509 131 26 65 chr12 16078009 16078551 -127707904 - L1MA6 LINE L1 -5 6295 5733 1975 141 0 46 chr12 16078551 16078857 -127707598 + AluSx SINE Alu 1 292 -20 5509 131 26 65 chr12 16078857 16078972 -127707483 - L1MA6 LINE L1 -567 5733 5615 2881 13 0 0 chr12 16078972 16079281 -127707174 - AluYa5 SINE Alu -2 309 1 5509 131 26 65 chr12 16079281 16079920 -127706535 - L1MA6 LINE L1 -685 5615 4953 528 59 0 0 chr12 16079920 16079988 -127706467 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 2009 127 36 0 chr12 16079989 16080265 -127706190 - AluSx SINE Alu -26 286 1 5509 131 26 65 chr12 16080265 16080314 -127706141 - L1MA6 LINE L1 -1347 4953 4904 746 164 15 67 chr12 16080314 16080448 -127706007 - FLAM_A SINE Alu -6 127 1 5509 131 26 65 chr12 16080448 16080816 -127705639 - L1MA6 LINE L1 -1396 4904 4644 1048 257 50 7 chr12 16080816 16081116 -127705339 - L1M4 LINE L1 -5355 2210 1898 889 294 55 76 chr12 16081679 16082101 -127704354 - L1M4 LINE L1 -5532 1954 1542 2482 127 50 27 chr12 16082110 16082550 -127703905 - LTR7 LTR ERV1 0 450 1 5049 227 45 72 chr12 16082550 16083982 -127702473 - L1MC/D LINE L1 -1650 4890 3537 1797 188 0 7 chr12 16083982 16084291 -127702164 - AluJo SINE Alu -5 307 1 5049 227 45 72 chr12 16084291 16085098 -127701357 - L1MC/D LINE L1 -3003 3537 2709 2179 102 0 3 chr12 16085596 16085917 -127700538 - AluSg SINE Alu 0 320 1 2168 103 10 0 chr12 16085985 16086276 -127700179 - AluSg SINE Alu -16 294 1 24 0 0 0 chr12 16086379 16086403 -127700052 + AT_rich Low_complexity Low_complexity 1 24 0 1659 151 78 9 chr12 16086484 16086828 -127699627 - L1MA7 LINE L1 -28 6263 5896 * 9276 205 54 35 chr12 16086825 16088232 -127698223 - L1MDa LINE L1 -3829 2711 1231 1925 150 10 0 chr12 16088232 16088546 -127697909 - L1MC1 LINE L1 0 6333 6017 9276 205 54 35 chr12 16088546 16089788 -127696667 - L1MDa LINE L1 -5309 1231 14 1907 133 7 0 chr12 16090591 16090870 -127695585 - AluSx SINE Alu -8 304 24 396 0 0 0 chr12 16091214 16091258 -127695197 + (TG)n Simple_repeat Simple_repeat 2 45 0 263 351 54 27 chr12 16091662 16091773 -127694682 - MER5A DNA MER1_type -68 121 8 2911 275 147 31 chr12 16091777 16093084 -127693371 + L2 LINE L2 1460 2917 -397 1583 193 3 69 chr12 16093085 16093474 -127692981 + MLT1A2 LTR MaLR 1 363 -11 634 305 81 38 chr12 16093487 16093644 -127692811 + L2 LINE L2 2917 3066 -247 2266 105 3 0 chr12 16093644 16093940 -127692515 + AluSq SINE Alu 2 298 -15 634 305 81 38 chr12 16093940 16094013 -127692442 + L2 LINE L2 3066 3134 -179 297 75 0 0 chr12 16094013 16094053 -127692402 + (CA)n Simple_repeat Simple_repeat 1 40 0 634 305 81 38 chr12 16094053 16094165 -127692290 + L2 LINE L2 3134 3275 -38 687 68 0 19 chr12 16094213 16094316 -127692139 - L1PA8 LINE L1 0 6172 6072 348 214 0 31 chr12 16094330 16094428 -127692027 - MER31A LTR ERV1 -38 447 353 2129 87 4 51 chr12 16096230 16096710 -127689745 + MER84-int LTR ERV1 4440 4953 -1 3327 106 6 6 chr12 16096710 16097211 -127689244 + MER84 LTR ERVI 1 501 -6 2553 164 56 42 chr12 16097255 16097723 -127688732 + Charlie5 DNA MER1_type 1951 2432 -192 2115 112 7 0 chr12 16097723 16098008 -127688447 - AluSx SINE Alu -13 299 13 2553 164 56 42 chr12 16098008 16098204 -127688251 + Charlie5 DNA MER1_type 2432 2624 0 420 314 130 0 chr12 16098347 16098516 -127687939 + MIR SINE MIR 48 238 -24 861 171 18 30 chr12 16098554 16098718 -127687737 + FRAM SINE Alu 1 162 -14 320 350 36 75 chr12 16098890 16099158 -127687297 - L2 LINE L2 -943 2371 2120 1768 150 0 8 chr12 16099158 16099448 -127687007 + AluSx SINE Alu 18 305 0 320 350 36 75 chr12 16099448 16099567 -127686888 - L2 LINE L2 -1194 2120 1998 3671 85 58 7 chr12 16100444 16100996 -127685459 - LTR19B LTR ERV1 0 580 1 313 256 37 24 chr12 16101413 16101495 -127684960 + MIR3 SINE MIR 109 191 -17 771 294 82 79 chr12 16101914 16102862 -127683593 + HAL1 LINE L1 2 956 -1551 8055 75 4 12 chr12 16102862 16103942 -127682513 - MER11C LTR ERVK 0 1071 1 771 294 82 79 chr12 16103942 16104144 -127682311 + HAL1 LINE L1 956 1156 -1351 24 0 0 0 chr12 16104156 16104180 -127682275 + AT_rich Low_complexity Low_complexity 1 24 0 734 225 132 28 chr12 16104244 16104415 -127682040 + HAL1 LINE L1 1342 1494 -1013 2289 148 75 5 chr12 16104415 16104813 -127681642 + MSTB LTR MaLR 1 426 0 734 225 132 28 chr12 16104813 16104930 -127681525 + HAL1 LINE L1 1494 1660 -847 1003 246 79 27 chr12 16105029 16105472 -127680983 + HAL1 LINE L1 2037 2502 -5 2287 72 48 0 chr12 16105497 16105790 -127680665 + AluY SINE Alu 1 307 -4 228 393 7 7 chr12 16105938 16106088 -127680367 - L2 LINE L2 -1016 2298 2149 409 379 6 12 chr12 16106578 16106747 -127679708 + MIR SINE MIR 13 180 -82 2266 74 17 7 chr12 16106944 16107240 -127679215 - AluSg SINE Alu -11 299 1 288 304 65 28 chr12 16107346 16107560 -127678895 + HAL1 LINE L1 1544 1765 -742 1813 142 6 66 chr12 16107705 16108023 -127678432 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr12 16108023 16108045 -127678410 + AT_rich Low_complexity Low_complexity 1 22 0 247 267 0 0 chr12 16108110 16108185 -127678270 + T-rich Low_complexity Low_complexity 1 75 0 572 279 0 0 chr12 16108206 16108335 -127678120 - FLAM_A SINE Alu -4 129 1 2144 123 0 13 chr12 16108337 16108646 -127677809 - AluSx SINE Alu -7 305 1 225 306 41 20 chr12 16108647 16108745 -127677710 + L2 LINE L2 2698 2797 -517 354 198 12 12 chr12 16109596 16109682 -127676773 + MLT1J2 LTR MaLR 344 429 -21 2190 76 7 16 chr12 16109817 16110121 -127676334 + AluY SINE Alu 1 301 -10 2354 103 0 0 chr12 16110130 16110441 -127676014 + AluSx SINE Alu 1 311 -1 2310 116 0 3 chr12 16111229 16111539 -127674916 - AluSx SINE Alu -3 309 1 185 111 28 0 chr12 16111612 16111648 -127674807 - L2 LINE L2 -2 3311 3275 439 270 132 21 chr12 16111775 16112064 -127674391 + L1ME4a LINE L1 5563 5883 -238 2104 112 20 3 chr12 16112565 16112870 -127673585 + AluSg SINE Alu 1 310 0 359 133 0 0 chr12 16113186 16113246 -127673209 - L1MA4 LINE L1 -8 6292 6233 528 160 0 0 chr12 16113346 16113440 -127673015 - L1MA4 LINE L1 -70 6230 6137 313 312 69 53 chr12 16113997 16114186 -127672269 + HAL1b LINE L1 586 777 -571 473 322 25 29 chr12 16114586 16114831 -127671624 - MLT1J LTR MaLR -29 482 239 1937 152 3 7 chr12 16115041 16115344 -127671111 + AluJb SINE Alu 6 307 -5 524 105 0 53 chr12 16115812 16115878 -127670577 - MSTC LTR MaLR 0 428 367 2281 114 0 16 chr12 16115878 16116193 -127670262 - AluSq SINE Alu -3 310 1 524 105 0 53 chr12 16116193 16116221 -127670234 - MSTC LTR MaLR -61 367 339 312 120 0 0 chr12 16116223 16116273 -127670182 - MSTC LTR MaLR -378 50 1 2143 125 0 0 chr12 16116491 16116787 -127669668 + AluSg1 SINE Alu 1 296 -13 2062 144 30 25 chr12 16116908 16117270 -127669185 + THE1B LTR MaLR 1 364 0 10485 104 22 29 chr12 16117271 16118861 -127667594 + THE1B-int LTR MaLR 2 1580 0 2279 122 37 8 chr12 16118861 16119215 -127667240 + THE1B LTR MaLR 1 364 0 387 312 95 5 chr12 16119749 16119938 -127666517 - MIR SINE MIR -48 214 9 250 268 37 12 chr12 16120099 16120181 -127666274 + L2 LINE L2 3191 3274 -39 366 291 147 50 chr12 16120823 16121109 -127665346 + L1M4 LINE L1 2734 2991 -3155 1860 126 43 7 chr12 16121109 16121386 -127665069 - AluJb SINE Alu -25 287 1 366 291 147 50 chr12 16121386 16121617 -127664838 + L1M4 LINE L1 2991 3301 -2845 2084 102 27 0 chr12 16121620 16121914 -127664541 + AluSq SINE Alu 1 302 -11 869 142 0 8 chr12 16122257 16122391 -127664064 - FLAM_C SINE Alu 0 133 1 3965 125 15 21 chr12 16122556 16123026 -127663429 + L1PA16 LINE L1 5513 5979 -187 4780 45 9 0 chr12 16123026 16123609 -127662846 + LTR10C LTR ERV1 4 591 0 3965 125 15 21 chr12 16123609 16123796 -127662659 + L1PA16 LINE L1 5979 6166 0 313 278 61 0 chr12 16123935 16124050 -127662405 + L1MEd LINE L1 604 725 -5394 865 218 161 59 chr12 16124137 16124462 -127661993 - L1ME LINE L1 -383 5787 5404 1757 132 52 14 chr12 16124462 16124749 -127661706 - AluSx SINE Alu -14 298 1 865 218 161 59 chr12 16124749 16124863 -127661592 - L1ME LINE L1 -766 5404 5303 650 161 23 8 chr12 16125356 16125486 -127660969 - AluJo SINE Alu -176 136 5 1948 106 36 30 chr12 16126406 16126708 -127659747 + AluSx SINE Alu 1 304 -8 200 143 48 0 chr12 16128889 16128931 -127657524 + C-rich Low_complexity Low_complexity 5 48 0 2621 27 0 3 chr12 16129674 16129974 -127656481 + AluY SINE Alu 1 299 -12 321 269 64 0 chr12 16130291 16130369 -127656086 - MIR SINE MIR -148 114 32 184 368 0 0 chr12 16130400 16130457 -127655998 - L2 LINE L2 -15 3298 3242 332 302 21 10 chr12 16133442 16133538 -127652917 - L2 LINE L2 -19 3253 3157 183 42 0 0 chr12 16134545 16134569 -127651886 + (CA)n Simple_repeat Simple_repeat 2 25 0 585 273 120 10 chr12 16134824 16135033 -127651422 + MIR SINE MIR 31 262 0 215 324 99 55 chr12 16135605 16135858 -127650597 - L2 LINE L2 -1020 2294 2031 22 35 0 0 chr12 16136174 16136203 -127650252 + AT_rich Low_complexity Low_complexity 1 29 0 2114 125 3 19 chr12 16136542 16136855 -127649600 - AluJb SINE Alu 0 312 5 2199 164 173 4 chr12 16137783 16138308 -127648147 - MER90 LTR ERV1 0 614 1 469 286 75 6 chr12 16138677 16138838 -127647617 - LTR33 LTR ERVL -326 195 24 287 141 0 26 chr12 16139570 16139692 -127646763 + LTR41 LTR ERVL 1 172 -601 462 148 62 0 chr12 16139753 16139834 -127646621 + MER58B DNA MER1_type 256 341 0 359 267 139 10 chr12 16141126 16141227 -127645228 + L2 LINE L2 3158 3271 -1 1381 158 57 0 chr12 16142261 16142489 -127643966 + AluJo SINE Alu 42 282 -30 2289 91 3 10 chr12 16145174 16145470 -127640985 + AluSq SINE Alu 1 294 -19 293 212 15 0 chr12 16145631 16145697 -127640758 - HsTC2 DNA Tc2 -4 1894 1828 1699 99 0 5 chr12 16146522 16146744 -127639711 + AluY SINE Alu 1 221 -90 376 233 34 41 chr12 16146749 16146915 -127639540 + L1MC3 LINE L1 6002 6166 0 1654 178 28 10 chr12 16147342 16147729 -127638726 + L1MD2 LINE L1 3592 3985 -2161 632 200 0 7 chr12 16147763 16147898 -127638557 + L1MD2 LINE L1 4789 4922 -1224 225 154 0 0 chr12 16147935 16147974 -127638481 + GA-rich Low_complexity Low_complexity 2 40 0 3888 224 48 12 chr12 16148013 16148953 -127637502 + L1MD2 LINE L1 4964 5869 -490 2695 81 21 55 chr12 16148953 16149373 -127637082 - L1PA13 LINE L1 -3 6160 5755 3888 224 48 12 chr12 16149373 16149579 -127636876 + L1MD2 LINE L1 5869 6066 -293 327 25 0 0 chr12 16149579 16149619 -127636836 + (CA)n Simple_repeat Simple_repeat 2 41 0 3888 224 48 12 chr12 16149619 16149738 -127636717 + L1MD2 LINE L1 6066 6273 -86 1148 302 106 17 chr12 16150017 16150481 -127635974 - L2 LINE L2 -2 3311 2807 1657 209 171 9 chr12 16150496 16150951 -127635504 - MLT1F LTR MaLR -13 529 1 308 366 93 12 chr12 16150990 16151236 -127635219 - L2 LINE L2 -540 2774 2509 615 222 99 41 chr12 16151306 16151477 -127634978 - MER5A DNA MER1_type 0 189 9 339 356 86 26 chr12 16151476 16151827 -127634628 + L2 LINE L2 2195 2566 -748 * 271 283 74 111 chr12 16152159 16152456 -127633999 + L2 LINE L2 2937 3222 -50 364 279 44 44 chr12 16152758 16152916 -127633539 + L2 LINE L2 3156 3313 0 2228 109 3 0 chr12 16155037 16155331 -127631124 + AluSq SINE Alu 1 295 -18 252 245 0 0 chr12 16156297 16156350 -127630105 - MIR SINE MIR -6 256 204 1353 137 5 0 chr12 16156498 16156703 -127629752 - AluJb SINE Alu -106 206 1 582 160 10 10 chr12 16156711 16156811 -127629644 - AluJb SINE Alu -23 289 190 396 106 64 0 chr12 16157923 16158017 -127628438 + CT-rich Low_complexity Low_complexity 1 100 0 364 295 152 29 chr12 16158523 16158733 -127627722 - MIR SINE MIR -6 256 21 388 254 61 48 chr12 16159461 16159626 -127626829 - MIR3 SINE MIR -30 178 12 453 279 158 21 chr12 16159726 16159916 -127626539 + MIR SINE MIR 2 217 -45 734 147 94 12 chr12 16160214 16160384 -127626071 + L1MA9 LINE L1 6091 6274 -38 364 257 88 68 chr12 16160570 16160718 -127625737 + MIR SINE MIR 112 262 0 209 33 33 0 chr12 16160784 16160814 -127625641 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr12 16160841 16160866 -127625589 + AT_rich Low_complexity Low_complexity 1 25 0 539 225 33 13 chr12 16160885 16161036 -127625419 - L1MA9 LINE L1 -38 6274 6121 235 295 33 41 chr12 16161183 16161305 -127625150 - MIR3 SINE MIR -40 168 48 1681 175 3 3 chr12 16161580 16161865 -127624590 + AluSx SINE Alu 20 304 -8 417 59 0 0 chr12 16161865 16161916 -127624539 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 620 124 9 0 chr12 16161916 16162021 -127624434 + (GA)n Simple_repeat Simple_repeat 2 107 0 229 321 0 45 chr12 16162738 16162872 -127623583 - MIR SINE MIR -62 146 19 183 129 0 0 chr12 16163531 16163562 -127622893 + (T)n Simple_repeat Simple_repeat 1 31 0 288 241 181 17 chr12 16163934 16164050 -127622405 + MIR3 SINE MIR 68 202 -6 195 163 61 82 chr12 16165676 16165725 -127620730 + L2 LINE L2 3209 3256 -16 746 196 111 54 chr12 16167252 16167702 -127618753 - MER69 DNA AcHobo -2 2524 1980 333 0 0 0 chr12 16167702 16167739 -127618716 + (TG)n Simple_repeat Simple_repeat 1 37 0 746 196 111 54 chr12 16167739 16167797 -127618658 - MER69 DNA AcHobo -546 1980 1927 201 283 19 0 chr12 16168864 16168917 -127617538 - L2 LINE L2 -5 3308 3255 210 238 303 41 chr12 16172259 16172381 -127614074 - MIR3 SINE MIR -11 197 44 314 343 22 15 chr12 16172491 16172625 -127613830 + MER5A DNA MER1_type 18 152 -37 21 57 0 0 chr12 16172627 16172662 -127613793 + AT_rich Low_complexity Low_complexity 1 35 0 2317 98 3 0 chr12 16172672 16172967 -127613488 + AluSp SINE Alu 1 296 -17 2961 161 69 12 chr12 16174039 16174603 -127611852 - L1PA16 LINE L1 -4 6162 5567 5129 196 18 10 chr12 16174715 16176154 -127610301 - L1PA16 LINE L1 -589 5577 4125 347 329 12 42 chr12 16176261 16176428 -127610027 + L2 LINE L2 2709 2870 -444 2594 62 0 0 chr12 16176479 16176787 -127609668 - AluY SINE Alu -3 308 1 222 304 138 36 chr12 16176847 16177094 -127609361 + L2 LINE L2 3004 3275 -38 1944 138 58 19 chr12 16178931 16179292 -127607163 - THE1C LTR MaLR 0 375 1 1077 224 32 44 chr12 16179717 16179818 -127606637 - MER87 LTR ERV1 -39 502 401 1657 181 31 10 chr12 16179818 16180110 -127606345 + AluSx SINE Alu 1 298 -14 1077 224 32 44 chr12 16180110 16180347 -127606108 - MER87 LTR ERV1 -140 401 168 566 318 23 17 chr12 16181165 16181338 -127605117 + MIR3 SINE MIR 20 193 -15 291 358 58 47 chr12 16181667 16182030 -127604425 - L2 LINE L2 -408 2906 2540 475 360 92 10 chr12 16182238 16182541 -127603914 + L2 LINE L2 1729 2056 -1258 408 220 99 0 chr12 16182626 16182717 -127603738 + L2 LINE L2 3202 3301 -12 296 64 21 0 chr12 16182719 16182766 -127603689 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 196 331 205 8 chr12 16182834 16182961 -127603494 + L2 LINE L2 2238 2389 -925 275 372 67 74 chr12 16183009 16183747 -127602708 + L2 LINE L2 2511 3258 -14 414 246 94 49 chr12 16184594 16184797 -127601658 - MIR SINE MIR -49 213 2 297 75 0 0 chr12 16185629 16185669 -127600786 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 1300 101 5 0 chr12 16185669 16185867 -127600588 - L1PA8 LINE L1 -24 6148 5950 25 31 0 0 chr12 16185874 16185906 -127600549 + AT_rich Low_complexity Low_complexity 1 32 0 193 279 0 0 chr12 16187303 16187346 -127599109 + L2 LINE L2 3230 3272 0 372 103 0 0 chr12 16188037 16188095 -127598360 + (TG)n Simple_repeat Simple_repeat 1 58 0 315 164 0 0 chr12 16188491 16188552 -127597903 + (CA)n Simple_repeat Simple_repeat 2 62 0 800 279 117 30 chr12 16188615 16189758 -127596697 + L1ME3A LINE L1 1429 2639 -3576 2151 109 0 7 chr12 16189758 16190052 -127596403 - AluSc SINE Alu -17 292 1 800 279 117 30 chr12 16190052 16190198 -127596257 + L1ME3A LINE L1 2639 2771 -3444 469 226 60 5 chr12 16190220 16190419 -127596036 + L1ME3A LINE L1 2874 3083 -3132 3760 92 6 0 chr12 16190612 16191154 -127595301 - MER41A LTR ERV1 -9 545 1 4629 132 17 36 chr12 16191236 16192099 -127594356 + L1MA6 LINE L1 5428 6274 -26 496 52 13 13 chr12 16192290 16192367 -127594088 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 856 236 81 32 chr12 16192434 16192680 -127593775 - MLT2B1 LTR ERVL -34 486 229 2177 94 23 17 chr12 16192747 16193046 -127593409 - AluSx SINE Alu -11 301 1 1563 233 92 68 chr12 16193074 16194219 -127592236 + L1ME3A LINE L1 5049 6224 -15 364 353 111 27 chr12 16194253 16194748 -127591707 + L2 LINE L2 2739 3271 -1 970 181 0 6 chr12 16195168 16195328 -127591127 + AluJo SINE Alu 1 159 -153 330 345 17 0 chr12 16195410 16195529 -127590926 - MER5C DNA MER1_type -200 124 4 215 319 50 71 chr12 16195863 16196004 -127590451 - MIR SINE MIR -71 191 54 279 300 0 0 chr12 16196046 16196116 -127590339 - MIR SINE MIR -119 143 74 654 241 203 5 chr12 16197574 16197781 -127588674 + MIR SINE MIR 2 249 -13 2254 217 28 17 chr12 16197886 16198416 -127588039 - MLT1F LTR MaLR 0 542 7 350 363 19 32 chr12 16199169 16199326 -127587129 + L3 LINE CR1 1381 1535 -42 590 255 194 5 chr12 16199331 16199547 -127586908 - MIR SINE MIR -3 259 3 2253 125 14 3 chr12 16199657 16200009 -127586446 - L1PA14 LINE L1 -1 6160 5805 1639 134 24 3 chr12 16200435 16200727 -127585728 + L1MA5 LINE L1 6002 6299 -1 21 36 0 0 chr12 16200736 16200764 -127585691 + AT_rich Low_complexity Low_complexity 1 28 0 399 157 0 0 chr12 16201211 16201281 -127585174 + (CA)n Simple_repeat Simple_repeat 1 70 0 24 0 0 0 chr12 16203011 16203035 -127583420 + AT_rich Low_complexity Low_complexity 1 24 0 1921 101 0 104 chr12 16203237 16203564 -127582891 + AluSg SINE Alu 5 297 -13 2498 184 19 35 chr12 16204148 16204687 -127581768 - MER74A LTR ERVL -3 555 26 22 35 0 0 chr12 16205817 16205846 -127580609 + AT_rich Low_complexity Low_complexity 1 29 0 761 285 71 45 chr12 16205851 16206275 -127580180 - LTR16A LTR ERVL 0 450 16 189 184 0 0 chr12 16206499 16206537 -127579918 - L2 LINE L2 0 3313 3276 1331 188 5 0 chr12 16206567 16206785 -127579670 + AluJb SINE Alu 1 219 -93 180 320 53 27 chr12 16209113 16209188 -127577267 + MIR SINE MIR 36 112 -96 1126 141 23 23 chr12 16209233 16209410 -127577045 - FRAM SINE Alu 0 176 1 2332 104 0 0 chr12 16209669 16209967 -127576488 + AluSg SINE Alu 1 298 -12 3833 119 94 20 chr12 16210934 16211648 -127574807 - LTR1 LTR ERV1 -1 784 18 594 279 119 9 chr12 16211889 16212108 -127574347 + MIR SINE MIR 3 245 -17 306 0 0 0 chr12 16212738 16212772 -127573683 + (TG)n Simple_repeat Simple_repeat 2 35 0 230 314 19 0 chr12 16212938 16213043 -127573412 + A-rich Low_complexity Low_complexity 1 107 0 213 94 0 0 chr12 16214656 16214688 -127571767 - L2 LINE L2 -11 3302 3271 418 351 124 53 chr12 16214975 16215842 -127570613 + L2 LINE L2 2225 3195 -77 391 343 34 59 chr12 16216062 16216301 -127570154 + L1MEc LINE L1 1509 1715 -861 844 225 0 28 chr12 16216515 16216697 -127569758 + FRAM SINE Alu 1 169 -7 871 331 68 35 chr12 16216933 16217570 -127568885 + L1MEc LINE L1 2317 2974 -3241 28 0 0 0 chr12 16217571 16217599 -127568856 + AT_rich Low_complexity Low_complexity 1 28 0 329 303 9 9 chr12 16217607 16217716 -127568739 + L1MEc LINE L1 3650 3758 -2457 316 313 53 40 chr12 16218076 16218226 -127568229 - L2 LINE L2 -4 3309 3158 32 43 0 0 chr12 16218338 16218384 -127568071 + AT_rich Low_complexity Low_complexity 1 46 0 305 313 40 40 chr12 16220269 16220368 -127566087 - L2 LINE L2 -25 3247 3149 2133 108 18 0 chr12 16220680 16220995 -127565460 + AluSx SINE Alu 1 320 0 256 329 89 0 chr12 16221276 16221422 -127565033 - MIR SINE MIR -6 256 98 510 250 13 26 chr12 16221444 16221600 -127564855 - MIR SINE MIR 0 262 109 190 333 16 16 chr12 16222875 16222938 -127563517 - MIR SINE MIR -89 119 57 202 293 20 91 chr12 16223280 16223338 -127563117 - MIR SINE MIR -83 125 75 2185 124 0 16 chr12 16223338 16223653 -127562802 + AluSx SINE Alu 1 310 -2 202 293 20 91 chr12 16223653 16223693 -127562762 - MIR SINE MIR -133 75 34 628 357 34 4 chr12 16225345 16225580 -127560875 + MIR SINE MIR 9 250 -12 356 245 102 0 chr12 16226703 16226801 -127559654 + L2 LINE L2 3206 3313 0 276 102 0 0 chr12 16226806 16226855 -127559600 + (TGGA)n Simple_repeat Simple_repeat 3 51 0 200 303 0 15 chr12 16227445 16227511 -127558944 + T-rich Low_complexity Low_complexity 3 67 0 203 254 0 56 chr12 16229109 16229180 -127557275 + L2 LINE L2 3186 3252 -20 203 243 0 0 chr12 16230174 16230211 -127556244 + polypyrimidine Low_complexity Low_complexity 6 42 0 2269 118 0 9 chr12 16232008 16232323 -127554132 - AluSx SINE Alu 0 312 1 1588 126 170 0 chr12 16233176 16233423 -127553032 - AluSx SINE Alu -23 289 1 325 179 52 67 chr12 16234273 16234407 -127552048 + L1MEc LINE L1 2154 2285 -4111 326 258 50 58 chr12 16234417 16234484 -127551971 - L1MEc LINE L1 -4459 1937 1842 22 35 0 0 chr12 16234484 16234513 -127551942 + AT_rich Low_complexity Low_complexity 1 29 0 326 258 50 58 chr12 16234513 16234537 -127551918 - L1MEc LINE L1 -4554 1842 1819 358 209 79 3 chr12 16234538 16234647 -127551808 + AluJ/FRAM SINE Alu 223 302 0 2506 256 152 53 chr12 16234651 16236252 -127550203 - L1MEc LINE L1 -4565 1831 73 505 299 81 15 chr12 16236324 16236521 -127549934 + LTR16A LTR ERVL 241 450 0 313 274 17 68 chr12 16236617 16236734 -127549721 - MIR3 SINE MIR -11 197 87 1021 257 20 4 chr12 16237134 16237383 -127549072 + MIR SINE MIR 7 259 -3 228 35 0 0 chr12 16237720 16237749 -127548706 + (TAG)n Simple_repeat Simple_repeat 1 29 0 355 336 0 35 chr12 16239207 16239350 -127547105 + LTR16A LTR ERVL 93 230 -220 450 0 0 0 chr12 16240452 16240502 -127545953 + (TA)n Simple_repeat Simple_repeat 2 51 0 188 211 0 0 chr12 16240732 16240770 -127545685 - L2 LINE L2 -7 3306 3269 685 341 148 14 chr12 16240958 16241465 -127544990 - L3 LINE CR1 -385 1192 618 921 213 76 105 chr12 16242049 16242457 -127543998 - MER57A LTR ERV1 -5 398 3 22 35 0 0 chr12 16243619 16243648 -127542807 + AT_rich Low_complexity Low_complexity 1 29 0 505 330 124 35 chr12 16244603 16245064 -127541391 + L3 LINE CR1 1071 1572 -5 5470 254 44 22 chr12 16245640 16248351 -127538104 + L1PA12 LINE L1 1 3296 -4288 36269 85 10 10 chr12 16248361 16254153 -127532302 + L1PA6 LINE L1 11 5811 -343 2384 93 0 0 chr12 16254153 16254454 -127532001 + AluY SINE Alu 1 301 -10 36269 85 10 10 chr12 16254454 16254799 -127531656 + L1PA6 LINE L1 5811 6154 0 17378 152 27 16 chr12 16254802 16255358 -127531097 + L1PA11 LINE L1 1652 2201 -4253 2066 145 0 37 chr12 16255358 16255682 -127530773 + AluSx SINE Alu 1 312 0 17378 152 27 16 chr12 16255682 16258824 -127527631 + L1PA11 LINE L1 2201 5837 -617 1864 129 86 0 chr12 16258824 16259102 -127527353 + AluSx SINE Alu 1 302 -10 17378 152 27 16 chr12 16259102 16259727 -127526728 + L1PA11 LINE L1 5837 6454 0 315 215 13 142 chr12 16259762 16259830 -127526625 + MIR SINE MIR 42 79 -172 1996 132 24 0 chr12 16259830 16260126 -127526329 + AluJb SINE Alu 1 303 -9 315 215 13 142 chr12 16260126 16260225 -127526230 + MIR SINE MIR 79 189 -62 870 206 75 9 chr12 16261584 16261812 -127524643 + AluJo SINE Alu 66 308 -4 565 319 56 14 chr12 16262171 16262416 -127524039 - MIR SINE MIR 0 262 14 236 273 34 23 chr12 16262889 16262977 -127523478 + MIR SINE MIR 168 256 -6 1812 172 14 3 chr12 16263069 16263359 -127523096 + AluJo SINE Alu 1 293 -19 300 178 0 0 chr12 16263359 16263432 -127523023 + G-rich Low_complexity Low_complexity 2 74 0 196 182 0 0 chr12 16263648 16263681 -127522774 + L3 LINE CR1 431 463 -1114 2006 234 76 48 chr12 16263688 16263805 -127522650 - L1MCc LINE L1 -4957 1466 1354 1876 183 3 3 chr12 16263805 16264105 -127522350 - AluJo SINE Alu -12 300 1 2006 234 76 48 chr12 16264105 16264763 -127521692 - L1MCc LINE L1 -5069 1354 669 1636 269 5 5 chr12 16264814 16265246 -127521209 - L1MCc LINE L1 -5967 456 25 232 182 0 0 chr12 16265263 16265307 -127521148 - Charlie8 DNA MER1_type -997 1420 1377 1194 278 116 65 chr12 16265454 16266181 -127520274 + L3 LINE CR1 504 1267 -310 230 278 120 37 chr12 16267976 16268084 -127518371 + L2 LINE L2 3196 3312 -1 192 77 0 0 chr12 16268344 16268370 -127518085 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1827 216 121 2 chr12 16268659 16269206 -127517249 + L1MC4 LINE L1 7431 8042 0 335 320 47 13 chr12 16269683 16269833 -127516622 - MIR SINE MIR -71 191 37 651 188 0 18 chr12 16270112 16270282 -127516173 + CT-rich Low_complexity Low_complexity 2 168 0 188 289 99 33 chr12 16270518 16270639 -127515816 + MIR SINE MIR 97 225 -37 209 345 44 53 chr12 16270692 16270805 -127515650 - MIR SINE MIR -76 132 21 808 262 86 13 chr12 16271050 16271283 -127515172 - MIR SINE MIR 0 262 13 267 274 139 36 chr12 16271342 16271645 -127514810 + L1ME4a LINE L1 5784 6117 -4 180 111 0 0 chr12 16273349 16273376 -127513079 + (GCTTG)n Simple_repeat Simple_repeat 2 28 0 1562 220 30 28 chr12 16276080 16276475 -127509980 + MSTD LTR MaLR 1 396 0 181 317 37 99 chr12 16276963 16277124 -127509331 + L2 LINE L2 2490 2640 -674 368 313 123 33 chr12 16277869 16278025 -127508430 + MIR SINE MIR 33 214 -48 2062 150 0 3 chr12 16278025 16278331 -127508124 + AluSx SINE Alu 1 305 -7 368 313 123 33 chr12 16278331 16278385 -127508070 + MIR SINE MIR 214 262 0 225 157 39 20 chr12 16278390 16278441 -127508014 + L2 LINE L2 3221 3272 0 1187 165 74 0 chr12 16278721 16278951 -127507504 + Tigger7 DNA MER2_type 178 424 -309 2558 147 123 4 chr12 16279248 16279737 -127506718 + Tigger7 DNA MER2_type 1 547 -1940 437 188 0 118 chr12 16279732 16279876 -127506579 + Tigger7 DNA MER2_type 2361 2487 0 * 2218 92 10 0 chr12 16279937 16280229 -127506226 + AluSg SINE Alu 1 295 -15 204 67 0 0 chr12 16280271 16280301 -127506154 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 301 262 12 12 chr12 16281351 16281435 -127505020 + MIR SINE MIR 161 244 -18 22 0 0 0 chr12 16281456 16281478 -127504977 + AT_rich Low_complexity Low_complexity 1 22 0 417 245 177 7 chr12 16281633 16281780 -127504675 + MIR SINE MIR 9 180 -82 391 343 35 20 chr12 16282260 16282431 -127504024 - MIR SINE MIR -50 212 40 375 309 9 29 chr12 16282542 16282752 -127503703 + MER112 DNA MER1_type 49 254 -6 2945 260 119 12 chr12 16283157 16284275 -127502180 - L2 LINE L2 0 3313 2056 1823 154 34 14 chr12 16284275 16284568 -127501887 + AluJb SINE Alu 1 299 -13 2945 260 119 12 chr12 16284568 16284724 -127501731 - L2 LINE L2 -1257 2056 1918 277 231 90 13 chr12 16284745 16284823 -127501632 + MIR SINE MIR 31 114 -148 241 170 0 19 chr12 16285081 16285134 -127501321 + AluSc SINE Alu 246 297 -2 480 35 0 0 chr12 16285140 16285198 -127501257 + (TA)n Simple_repeat Simple_repeat 1 58 0 378 0 0 0 chr12 16285261 16285303 -127501152 + (CA)n Simple_repeat Simple_repeat 2 43 0 324 0 0 0 chr12 16285684 16285720 -127500735 + (CA)n Simple_repeat Simple_repeat 2 37 0 708 325 29 0 chr12 16285805 16286048 -127500407 + MIR SINE MIR 12 261 -1 300 253 0 0 chr12 16286049 16286124 -127500331 + (ATG)n Simple_repeat Simple_repeat 1 75 0 316 290 21 11 chr12 16286135 16286228 -127500227 + MIR3 SINE MIR 66 159 -49 33 25 0 0 chr12 16286486 16286526 -127499929 + AT_rich Low_complexity Low_complexity 1 40 0 958 308 47 37 chr12 16286664 16287154 -127499301 + MLT1K LTR MaLR 58 552 -36 2270 99 0 7 chr12 16288139 16288442 -127498013 + AluSg SINE Alu 2 302 -8 194 248 171 26 chr12 16288632 16288749 -127497706 - L2 LINE L2 -13 3300 3167 566 238 105 41 chr12 16289269 16289441 -127497014 + MER5A DNA MER1_type 7 189 0 282 56 0 0 chr12 16290995 16291031 -127495424 + (TG)n Simple_repeat Simple_repeat 1 36 0 22 35 0 0 chr12 16293079 16293108 -127493347 + AT_rich Low_complexity Low_complexity 1 29 0 393 376 5 5 chr12 16293285 16293474 -127492981 + L1ME LINE L1 22 210 -6330 267 31 0 0 chr12 16293494 16293526 -127492929 + (TTG)n Simple_repeat Simple_repeat 2 33 0 219 156 0 22 chr12 16293802 16293847 -127492608 + C-rich Low_complexity Low_complexity 3 46 0 472 266 37 37 chr12 16294132 16294346 -127492109 + L1ME LINE L1 2148 2361 -4179 730 244 93 9 chr12 16294368 16294593 -127491862 + MLT1C LTR MaLR 224 467 0 406 149 36 113 chr12 16294604 16294772 -127491683 + L1ME LINE L1 2393 2547 -3993 1273 220 25 22 chr12 16294778 16295137 -127491318 + L1M4 LINE L1 4264 4623 -1523 5057 222 121 61 chr12 16295154 16297039 -127489416 + L1ME LINE L1 3179 4950 -1590 2001 126 3 17 chr12 16297039 16297341 -127489114 - AluSc SINE Alu -11 298 1 5057 222 121 61 chr12 16297341 16297402 -127489053 + L1ME LINE L1 4950 5006 -1534 6422 70 17 8 chr12 16297402 16298488 -127487967 + L1PA8A LINE L1 5035 6128 -3 5057 222 121 61 chr12 16298488 16298766 -127487689 + L1ME LINE L1 5006 5537 -1003 2047 104 11 4 chr12 16298820 16299100 -127487355 + AluSx SINE Alu 24 305 -7 254 345 78 39 chr12 16299110 16299342 -127487113 - L2 LINE L2 -1330 1984 1744 221 355 79 32 chr12 16300265 16300454 -127486001 + L2 LINE L2 2765 2962 -352 429 320 143 26 chr12 16300757 16300988 -127485467 - MIR SINE MIR -3 259 2 789 196 35 30 chr12 16302658 16302888 -127483567 - L1MC5 LINE L1 -30 7931 7701 641 176 17 0 chr12 16302967 16303086 -127483369 + L1PA16 LINE L1 6040 6160 -6 272 232 23 90 chr12 16303140 16303317 -127483138 + L1ME LINE L1 5948 6112 -403 2490 51 0 0 chr12 16303382 16303677 -127482778 - AluY SINE Alu -16 295 1 278 353 32 5 chr12 16304107 16304294 -127482161 - Tigger8 DNA MER2_type -87 579 388 345 282 45 0 chr12 16304604 16304714 -127481741 - Tigger8 DNA MER2_type -420 246 132 251 319 36 87 chr12 16305301 16305439 -127481016 + L2 LINE L2 3142 3272 0 2209 109 3 0 chr12 16307662 16307956 -127478499 - AluSx SINE Alu -17 295 1 2082 108 3 10 chr12 16308711 16308999 -127477456 + AluSx SINE Alu 4 289 -23 214 296 91 0 chr12 16313261 16313349 -127473106 - MIR SINE MIR -56 206 111 502 238 90 0 chr12 16314863 16314985 -127471470 + MER20 DNA MER1_type 49 181 -38 200 170 38 0 chr12 16315470 16315523 -127470932 + (TA)n Simple_repeat Simple_repeat 2 56 0 24 32 0 0 chr12 16315703 16315734 -127470721 + AT_rich Low_complexity Low_complexity 1 31 0 225 348 65 14 chr12 16316348 16316486 -127469969 - Charlie8 DNA MER1_type -2139 278 134 591 250 91 43 chr12 16317404 16317612 -127468843 - MIR SINE MIR -3 259 42 383 309 37 53 chr12 16318039 16318227 -127468228 - MLT1K LTR MaLR -241 347 163 248 380 73 0 chr12 16318365 16318502 -127467953 - MIR SINE MIR -32 230 84 1367 133 167 31 chr12 16319076 16319393 -127467062 - MER46B DNA MER2_type 0 236 2 298 271 0 0 chr12 16319444 16319529 -127466926 + L1ME2 LINE L1 5579 5663 -501 757 233 47 57 chr12 16319531 16319831 -127466624 + L1ME2 LINE L1 5724 6020 -144 225 216 252 36 chr12 16319920 16320059 -127466396 - MIR SINE MIR -93 169 1 2167 132 0 0 chr12 16320080 16320390 -127466065 - AluSg SINE Alu 0 310 1 2320 103 10 0 chr12 16322978 16323288 -127463167 - AluSq SINE Alu 0 313 1 425 222 93 9 chr12 16323355 16323463 -127462992 - L2 LINE L2 -4 3309 3193 2915 119 15 7 chr12 16323698 16324153 -127462302 - L1PB2 LINE L1 -2 6149 5691 459 333 81 10 chr12 16324718 16324916 -127461539 - MIR SINE MIR -48 214 3 2268 102 0 3 chr12 16326244 16326537 -127459918 - AluY SINE Alu -19 292 1 25 0 0 0 chr12 16327343 16327368 -127459087 + AT_rich Low_complexity Low_complexity 1 25 0 240 143 0 0 chr12 16328064 16328106 -127458349 + (GGAGA)n Simple_repeat Simple_repeat 1 42 0 206 200 25 0 chr12 16328107 16328147 -127458308 + MER5C DNA MER1_type 284 324 0 24 53 0 0 chr12 16329070 16329108 -127457347 + AT_rich Low_complexity Low_complexity 1 38 0 6114 206 40 15 chr12 16329127 16332426 -127454029 + L1MA4 LINE L1 3 3386 -2942 1575 168 7 7 chr12 16332427 16332719 -127453736 - AluSq SINE Alu -8 305 14 261 235 12 0 chr12 16332997 16333082 -127453373 - L1 LINE L1 -2951 3195 3110 2074 124 3 7 chr12 16333082 16333388 -127453067 - AluSq SINE Alu -8 305 1 9863 168 33 31 chr12 16333390 16336018 -127450437 + L1MA4 LINE L1 3385 6016 -466 1096 177 51 9 chr12 16336018 16336233 -127450222 + THE1C LTR MaLR 1 224 -151 1514 112 0 0 chr12 16336953 16337150 -127449305 - AluSx SINE Alu -115 197 1 313 264 132 25 chr12 16337286 16337407 -127449048 - L2 LINE L2 -1 3312 3179 825 276 0 10 chr12 16337467 16337670 -127448785 + MIR SINE MIR 28 228 -34 7172 176 34 30 chr12 16338506 16340258 -127446197 + L1PA16 LINE L1 3539 5282 -884 2394 103 3 0 chr12 16340258 16340570 -127445885 + AluSp SINE Alu 1 313 0 7172 176 34 30 chr12 16340570 16340903 -127445552 + L1PA16 LINE L1 5282 5612 -554 1770 96 100 4 chr12 16340903 16341153 -127445302 + AluSp SINE Alu 1 274 -39 7172 176 34 30 chr12 16341153 16341665 -127444790 + L1PA16 LINE L1 5612 6164 -2 1361 253 65 17 chr12 16341662 16342121 -127444334 + L1M4 LINE L1 4783 5263 -883 * 734 192 29 17 chr12 16342122 16342294 -127444161 + L1MB4 LINE L1 6007 6180 0 2820 249 32 29 chr12 16342307 16343004 -127443451 - L1MEc LINE L1 -5462 934 232 726 143 118 0 chr12 16343004 16343123 -127443332 - FLAM_C SINE Alu 0 133 1 2820 249 32 29 chr12 16343123 16343319 -127443136 - L1MEc LINE L1 -6164 232 38 687 287 101 27 chr12 16343322 16344177 -127442278 - L1M4b LINE L1 -4614 2343 1332 324 120 0 0 chr12 16346462 16346512 -127439943 + (CA)n Simple_repeat Simple_repeat 1 50 0 269 291 116 0 chr12 16346676 16346762 -127439693 - MIR SINE MIR -118 144 49 434 74 0 0 chr12 16347492 16347546 -127438909 + Alu SINE Alu 228 281 -29 2075 102 7 36 chr12 16347948 16348252 -127438203 - AluSx SINE Alu -17 295 1 306 314 159 23 chr12 16348502 16348722 -127437733 - MIR SINE MIR -12 250 1 377 246 136 0 chr12 16348734 16348844 -127437611 - MIR SINE MIR -36 226 102 1715 159 82 12 chr12 16349493 16349833 -127436622 + MLT1A1 LTR MaLR 1 364 -1 446 299 96 0 chr12 16350719 16350886 -127435569 - MLT1J2 LTR MaLR -2 448 266 228 362 145 18 chr12 16351376 16351597 -127434858 + L2 LINE L2 3047 3295 -18 235 306 106 53 chr12 16351771 16351941 -127434514 + MIR SINE MIR 40 218 -44 182 318 0 16 chr12 16352561 16352624 -127433831 + L2 LINE L2 3211 3272 0 266 341 18 43 chr12 16352683 16352847 -127433608 - L3 LINE CR1 -352 1225 1066 2222 102 0 29 chr12 16353709 16354022 -127432433 + AluSx SINE Alu 1 304 -8 748 112 60 22 chr12 16357968 16358102 -127428353 - L1MA9 LINE L1 0 6312 6174 330 153 0 0 chr12 16358102 16358161 -127428294 + (TA)n Simple_repeat Simple_repeat 2 60 0 713 72 0 0 chr12 16358172 16358269 -127428186 - L1MA9 LINE L1 -153 6159 6063 327 301 73 70 chr12 16358955 16359297 -127427158 + L1ME4a LINE L1 5716 6058 -63 210 253 172 10 chr12 16359952 16360051 -127426404 - MIR SINE MIR -110 152 38 43 20 0 0 chr12 16360752 16360802 -127425653 + AT_rich Low_complexity Low_complexity 1 50 0 1719 72 0 0 chr12 16360806 16361013 -127425442 - AluSc SINE Alu -20 289 83 2248 103 0 7 chr12 16361290 16361591 -127424864 - AluSx SINE Alu -13 299 1 2217 117 0 19 chr12 16363267 16363584 -127422871 - AluSx SINE Alu -1 311 1 475 309 48 24 chr12 16365275 16365443 -127421012 + MIR SINE MIR 1 172 -90 224 292 46 0 chr12 16366029 16366094 -127420361 + MIR SINE MIR 40 107 -155 869 271 86 46 chr12 16366098 16366530 -127419925 + LTR16A1 LTR ERVL 1 449 -8 269 221 93 0 chr12 16366530 16366616 -127419839 + MIR SINE MIR 110 203 -59 190 319 31 105 chr12 16368488 16368679 -127417776 - L2 LINE L2 -87 3185 3009 1317 194 56 22 chr12 16368939 16369158 -127417297 - MER58B DNA MER1_type -2080 340 105 1641 207 10 0 chr12 16369158 16369178 -127417277 - AluSq SINE Alu -9 304 286 180 0 0 0 chr12 16369178 16369198 -127417257 + (TG)n Simple_repeat Simple_repeat 1 20 0 1641 207 10 0 chr12 16369198 16369476 -127416979 - AluSq SINE Alu -27 286 3 1317 194 56 22 chr12 16369476 16369576 -127416879 - MER58B DNA MER1_type -2315 105 10 185 95 0 48 chr12 16369932 16369974 -127416481 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 3240 106 47 4 chr12 16370341 16370831 -127415624 + MER9 LTR ERVK 1 511 0 394 236 34 0 chr12 16371151 16371240 -127415215 + MER65C LTR ERV1 1 92 -369 1153 56 0 7 chr12 16371240 16371383 -127415072 + AluSg/x SINE Alu 165 306 -6 2211 133 3 13 chr12 16371383 16371767 -127414688 + MER65C LTR ERV1 80 459 -2 301 243 54 27 chr12 16374821 16374895 -127411560 + MER91C DNA MER1_type 44 119 -21 238 329 43 43 chr12 16375828 16375968 -127410487 + MIR SINE MIR 58 197 -65 790 222 68 17 chr12 16376639 16377024 -127409431 + MLT1C LTR MaLR 1 466 -1 743 198 249 20 chr12 16377115 16377266 -127409189 - MLT1A2 LTR MaLR -4 361 246 1902 130 61 21 chr12 16377266 16377596 -127408859 + MER61A LTR ERV1 1 343 0 743 198 249 20 chr12 16377596 16377737 -127408718 - MLT1A2 LTR MaLR -119 246 2 247 203 0 47 chr12 16377939 16378003 -127408452 - MLT1K LTR MaLR -17 571 511 2057 166 16 51 chr12 16379210 16379639 -127406816 + MLT2D LTR ERVL 1 414 0 499 273 22 49 chr12 16379711 16379894 -127406561 - MER20B DNA MER1_type -605 178 1 228 214 0 0 chr12 16379894 16379936 -127406519 - MIR3 SINE MIR -48 160 119 2062 114 7 0 chr12 16381092 16381396 -127405059 + AluSg SINE Alu 1 306 0 277 191 0 44 chr12 16381638 16381706 -127404749 + MLT1K LTR MaLR 511 575 -13 226 336 121 0 chr12 16383605 16383729 -127402726 + MIR SINE MIR 36 174 -57 2115 125 0 0 chr12 16384214 16384530 -127401925 - AluSx SINE Alu 0 316 1 343 346 60 16 chr12 16384740 16384925 -127401530 - MIR SINE MIR -57 205 13 327 306 11 38 chr12 16385134 16385317 -127401138 + GA-rich Low_complexity Low_complexity 3 180 0 2118 128 0 0 chr12 16385857 16386139 -127400316 + AluSx SINE Alu 1 282 -30 187 54 54 0 chr12 16386142 16386179 -127400276 + A-rich Low_complexity Low_complexity 2 40 0 26 0 0 0 chr12 16388026 16388052 -127398403 + AT_rich Low_complexity Low_complexity 1 26 0 206 223 0 117 chr12 16388176 16388270 -127398185 + L2 LINE L2 3189 3271 -1 245 205 102 102 chr12 16391234 16391361 -127395094 - L3b LINE CR1 -171 1412 1286 193 344 0 0 chr12 16391432 16391493 -127394962 - L3b LINE CR1 -415 1168 1108 315 305 150 20 chr12 16391763 16391963 -127394492 + MIR SINE MIR 21 246 -16 25 31 0 0 chr12 16393012 16393044 -127393411 + AT_rich Low_complexity Low_complexity 1 32 0 1805 150 13 19 chr12 16394449 16394756 -127391699 + AluJb SINE Alu 6 310 -2 23 0 0 0 chr12 16394756 16394779 -127391676 + AT_rich Low_complexity Low_complexity 1 23 0 2249 96 36 0 chr12 16395348 16395649 -127390806 + AluSx SINE Alu 1 312 0 23 0 0 0 chr12 16395837 16395860 -127390595 + AT_rich Low_complexity Low_complexity 1 23 0 1069 228 135 20 chr12 16396508 16396960 -127389495 + Charlie4a DNA MER1_type 1 504 -4 871 254 88 58 chr12 16397183 16397424 -127389031 + L2 LINE L2 1975 2232 -1082 2133 90 21 14 chr12 16397424 16397712 -127388743 - AluSq SINE Alu -17 296 7 871 254 88 58 chr12 16397712 16397832 -127388623 + L2 LINE L2 2232 2347 -967 2946 68 25 8 chr12 16397832 16398229 -127388226 + MLT2A1 LTR ERVL 1 404 -40 214 149 21 21 chr12 16398248 16398295 -127388160 + (TA)n Simple_repeat Simple_repeat 1 47 0 322 105 0 35 chr12 16398303 16398360 -127388095 + MLT2A1 LTR ERVL 399 453 0 2019 271 74 28 chr12 16398360 16398480 -127387975 + L2 LINE L2 2343 2456 -857 1919 91 76 0 chr12 16398480 16398743 -127387712 - AluSp SINE Alu -8 305 23 2019 271 74 28 chr12 16398743 16399489 -127386966 + L2 LINE L2 2456 3246 -67 2261 125 0 0 chr12 16399578 16399882 -127386573 + AluSx SINE Alu 1 304 -8 303 261 86 39 chr12 16402008 16402151 -127384304 + MIR3 SINE MIR 4 160 -68 2532 144 14 23 chr12 16402201 16402639 -127383816 + Tigger2a DNA MER2_type 1 434 0 184 115 0 58 chr12 16402722 16402774 -127383681 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 418 285 81 12 chr12 16403186 16403358 -127383097 - MIR SINE MIR -48 214 31 22 0 0 0 chr12 16403627 16403649 -127382806 + AT_rich Low_complexity Low_complexity 1 22 0 651 290 21 21 chr12 16403852 16404098 -127382357 - L1MC4a LINE L1 -352 5826 5681 354 183 0 0 chr12 16404104 16404175 -127382280 + (CA)n Simple_repeat Simple_repeat 2 72 0 208 295 16 0 chr12 16404175 16404236 -127382219 + (TA)n Simple_repeat Simple_repeat 2 63 0 535 266 73 49 chr12 16404259 16404545 -127381910 - L1MC4a LINE L1 -2179 5629 5337 21 0 0 0 chr12 16406125 16406146 -127380309 + AT_rich Low_complexity Low_complexity 1 21 0 1713 147 68 4 chr12 16406647 16406926 -127379529 - AluJb SINE Alu -15 297 1 2304 77 0 39 chr12 16408150 16408462 -127377993 - AluSc SINE Alu -9 300 1 1616 161 29 6 chr12 16409788 16410099 -127376356 + MER33 DNA MER1_type 7 324 0 1220 119 92 37 chr12 16410228 16410446 -127376009 - MER30 DNA MER1_type 0 230 1 1865 166 47 36 chr12 16410577 16410656 -127375799 + MLT1B LTR MaLR 1 78 -312 2143 117 3 0 chr12 16410656 16410946 -127375509 - AluSx SINE Alu -19 293 3 1865 166 47 36 chr12 16410946 16411252 -127375203 + MLT1B LTR MaLR 78 390 0 21 0 0 0 chr12 16412369 16412390 -127374065 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 16412812 16412833 -127373622 + AT_rich Low_complexity Low_complexity 1 21 0 2261 118 0 3 chr12 16412886 16413199 -127373256 - AluSx SINE Alu 0 312 1 768 238 0 0 chr12 16413365 16413533 -127372922 - L1PB4 LINE L1 -7 6149 5982 467 340 38 0 chr12 16413711 16413870 -127372585 - MIR3 SINE MIR -13 195 31 2188 84 28 0 chr12 16414155 16414441 -127372014 + AluSg SINE Alu 1 294 -16 2216 303 131 23 chr12 16414714 16415796 -127370659 + L2 LINE L2 1413 2611 -703 241 167 0 100 chr12 16415819 16415879 -127370576 + MER94 DNA DNA 1 54 -80 1343 265 83 27 chr12 16415978 16416616 -127369839 + L2 LINE L2 2627 3313 0 256 333 81 0 chr12 16417069 16417156 -127369299 + MIR3 SINE MIR 107 200 -8 216 0 0 0 chr12 16417232 16417256 -127369199 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1172 293 108 72 chr12 16417256 16418086 -127368369 + L2 LINE L2 2048 2907 -407 209 307 14 100 chr12 16418160 16418300 -127368155 + L2 LINE L2 3182 3309 -4 209 194 0 0 chr12 16418357 16418393 -127368062 + T-rich Low_complexity Low_complexity 3 38 0 192 231 39 19 chr12 16419150 16419202 -127367253 - L2 LINE L2 -4 3309 3257 243 356 62 25 chr12 16419805 16419965 -127366490 + L3 LINE CR1 1209 1374 -203 553 288 44 34 chr12 16420074 16420279 -127366176 + MER20B DNA MER1_type 4 210 -573 31 26 0 0 chr12 16420409 16420447 -127366008 + AT_rich Low_complexity Low_complexity 1 38 0 6953 199 56 29 chr12 16421317 16423022 -127363433 - L1 LINE L1 -2504 3824 2167 1319 151 84 74 chr12 16423022 16423306 -127363149 - AluJo SINE Alu -25 287 1 6953 199 56 29 chr12 16423306 16424143 -127362312 - L1 LINE L1 -4161 2167 1354 2214 77 10 33 chr12 16424143 16424443 -127362012 - AluY SINE Alu -18 293 1 6953 199 56 29 chr12 16424443 16425612 -127360843 - L1 LINE L1 -4974 1354 17 562 232 73 16 chr12 16425878 16426124 -127360331 + MER20B DNA MER1_type 524 783 0 188 222 22 0 chr12 16426125 16426170 -127360285 + MIR3 SINE MIR 154 199 -9 493 286 117 64 chr12 16426936 16427278 -127359177 + MLT1J LTR MaLR 109 468 -43 326 292 25 50 chr12 16427529 16427649 -127358806 + L2 LINE L2 3190 3306 -7 274 237 17 0 chr12 16428411 16428470 -127357985 + L2 LINE L2 3209 3268 -4 180 0 0 0 chr12 16428500 16428520 -127357935 + (T)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr12 16428571 16428593 -127357862 + AT_rich Low_complexity Low_complexity 1 22 0 1649 154 15 7 chr12 16428600 16428873 -127357582 + AluJo SINE Alu 19 293 -19 1800 188 0 0 chr12 16428877 16429185 -127357270 - AluJo SINE Alu -4 308 1 23 0 0 0 chr12 16429193 16429216 -127357239 + AT_rich Low_complexity Low_complexity 1 23 0 1531 40 25 5 chr12 16430230 16430429 -127356026 + L1PA8 LINE L1 5970 6172 0 226 211 0 0 chr12 16430559 16430611 -127355844 - MIR SINE MIR -94 168 117 438 265 41 27 chr12 16430797 16430944 -127355511 + MER110 LTR ERV1 256 404 -87 186 269 64 26 chr12 16431021 16431099 -127355356 - MIR SINE MIR -122 140 60 305 306 96 41 chr12 16431714 16431933 -127354522 - MIR SINE MIR -14 248 18 22 35 0 0 chr12 16432550 16432579 -127353876 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 16432655 16432683 -127353772 + AT_rich Low_complexity Low_complexity 1 28 0 2196 122 48 17 chr12 16433311 16433664 -127352791 + THE1B LTR MaLR 1 364 0 11194 87 17 21 chr12 16433664 16435251 -127351204 + THE1B-int LTR MaLR 1 1580 0 2112 138 48 20 chr12 16435251 16435605 -127350850 + THE1B LTR MaLR 1 364 0 764 163 14 14 chr12 16436023 16436323 -127350132 + CT-rich Low_complexity Low_complexity 1 300 0 586 226 17 90 chr12 16436323 16436391 -127350064 - AluJo/FRAM SINE Alu -2 300 229 2271 110 10 0 chr12 16436391 16436699 -127349756 + AluY SINE Alu 1 311 0 586 226 17 90 chr12 16436699 16436807 -127349648 - AluJo/FRAM SINE Alu -73 229 137 1983 122 7 10 chr12 16437615 16437903 -127348552 + AluSx SINE Alu 3 289 -23 321 158 0 0 chr12 16437849 16437906 -127348549 + Alu SINE Alu 236 328 0 236 0 28 28 chr12 16437906 16437942 -127348513 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 384 297 148 0 chr12 16437942 16438097 -127348358 - MIR3 SINE MIR -29 179 2 182 261 22 0 chr12 16438075 16438121 -127348334 - L2 LINE L2 -35 3237 3191 * 2317 109 0 3 chr12 16438197 16438509 -127347946 - AluSx SINE Alu -1 311 1 383 303 38 43 chr12 16438686 16438871 -127347584 + MIR SINE MIR 1 184 -78 1251 51 17 6 chr12 16439373 16439438 -127347017 + (TTTC)n Simple_repeat Simple_repeat 1 243 0 1251 51 17 6 chr12 16439438 16439614 -127346841 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1893 169 0 25 chr12 16439646 16439966 -127346489 - AluSx SINE Alu 0 312 1 25 0 0 0 chr12 16440029 16440054 -127346401 + AT_rich Low_complexity Low_complexity 1 25 0 2177 121 0 22 chr12 16440263 16440578 -127345877 + AluSx SINE Alu 1 308 -4 2110 98 0 24 chr12 16440814 16441125 -127345330 + AluSc SINE Alu 1 304 0 967 148 0 0 chr12 16441655 16441790 -127344665 - FLAM_C SINE Alu -5 138 4 188 255 20 0 chr12 16441806 16441857 -127344598 + MIR3 SINE MIR 139 190 -18 2368 77 34 0 chr12 16442966 16443263 -127343192 - AluSx SINE Alu -5 307 1 361 348 141 0 chr12 16443553 16443688 -127342767 + L2 LINE L2 3119 3272 0 278 154 0 77 chr12 16444726 16444791 -127341664 + MIR SINE MIR 203 262 0 2055 114 11 0 chr12 16445225 16445547 -127340908 - AluSx SINE Alu 0 325 1 490 234 234 7 chr12 16445549 16445690 -127340765 - MIR SINE MIR -74 188 16 339 320 13 11 chr12 16445707 16445839 -127340616 + MIR SINE MIR 15 143 -65 520 256 95 42 chr12 16445842 16445897 -127340558 - MIR3 SINE MIR -9 199 148 1946 143 55 27 chr12 16445897 16446262 -127340193 + THE1C LTR MaLR 1 375 0 520 256 95 42 chr12 16446262 16446374 -127340081 - MIR3 SINE MIR -60 148 23 255 191 0 0 chr12 16446388 16446435 -127340020 + MIR SINE MIR 157 203 -59 282 240 10 52 chr12 16446652 16446748 -127339707 + MIR SINE MIR 86 177 -85 21 0 0 0 chr12 16449257 16449278 -127337177 + AT_rich Low_complexity Low_complexity 1 21 0 2235 109 0 7 chr12 16451735 16452038 -127334417 - AluSx SINE Alu -11 301 1 209 277 18 98 chr12 16452362 16452474 -127333981 - L3 LINE CR1 -3 1574 1472 627 94 0 0 chr12 16452541 16452637 -127333818 + (TCCA)n Simple_repeat Simple_repeat 2 97 0 26 0 0 0 chr12 16453870 16453896 -127332559 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr12 16454092 16454118 -127332337 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2055 104 0 11 chr12 16454118 16454405 -127332050 - AluSx SINE Alu -28 284 1 2079 104 21 0 chr12 16456255 16456543 -127329912 + AluSp SINE Alu 20 313 0 1182 206 63 69 chr12 16456608 16457112 -127329343 + LTR24B LTR ERV1 70 570 -6 187 225 0 0 chr12 16457258 16457298 -127329157 - L2 LINE L2 -5 3308 3269 441 276 78 6 chr12 16458969 16459225 -127327230 - L1ME LINE L1 -606 5625 5352 262 280 32 80 chr12 16459285 16459824 -127326631 - L1ME LINE L1 -839 1737 1302 45 34 0 0 chr12 16460030 16460089 -127326366 + AT_rich Low_complexity Low_complexity 1 59 0 559 205 0 39 chr12 16460106 16460233 -127326222 - FLAM_A SINE Alu -3 139 18 297 0 0 0 chr12 16460708 16460741 -127325714 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 242 340 0 10 chr12 16461656 16461753 -127324702 + L2 LINE L2 2562 2657 -657 1369 207 37 12 chr12 16462072 16462395 -127324060 + MER58B DNA MER1_type 10 340 -1 3052 108 13 5 chr12 16462905 16463463 -127322992 + MER41B LTR ERV1 1 635 0 250 284 9 64 chr12 16464223 16464332 -127322123 - MIR3 SINE MIR -21 187 85 987 208 48 24 chr12 16464489 16464782 -127321673 + L1MCc LINE L1 19 318 -6105 344 172 25 42 chr12 16464798 16464954 -127321501 - MER3 DNA MER1_type -1 208 1 1075 282 118 62 chr12 16464963 16465668 -127320787 + L1MCc LINE L1 335 1078 -5345 317 271 85 34 chr12 16465674 16465792 -127320663 + L1MCc LINE L1 1110 1233 -5190 37 39 0 0 chr12 16465819 16465870 -127320585 + AT_rich Low_complexity Low_complexity 1 51 0 369 231 0 0 chr12 16465871 16465949 -127320506 + MER3 DNA MER1_type 41 118 -91 576 156 69 31 chr12 16465997 16466157 -127320298 + MER3 DNA MER1_type 2459 2624 0 2097 243 67 12 chr12 16466160 16466893 -127319562 + L1MCc LINE L1 2957 3729 -3212 193 296 19 0 chr12 16469554 16469608 -127316847 + MIR SINE MIR 93 147 -61 624 225 7 40 chr12 16469647 16469798 -127316657 - MIR SINE MIR -36 226 81 3928 135 39 43 chr12 16470007 16470778 -127315677 - L1MA5 LINE L1 -2 6298 5531 270 304 49 20 chr12 16471003 16471105 -127315350 + L2 LINE L2 3182 3286 -27 1417 248 118 71 chr12 16471661 16471885 -127314570 + L1ME LINE L1 6 218 -5852 462 65 0 0 chr12 16471885 16471947 -127314508 + (TCCA)n Simple_repeat Simple_repeat 3 64 0 1417 248 118 71 chr12 16471947 16472549 -127313906 + L1ME LINE L1 218 871 -5199 27 0 0 26 chr12 16473675 16473698 -127312757 + AT_rich Low_complexity Low_complexity 1 24 -13 2467 58 0 0 chr12 16473698 16473993 -127312462 + AluY SINE Alu 1 295 -16 27 0 0 26 chr12 16473993 16474007 -127312448 + AT_rich Low_complexity Low_complexity 24 37 0 6755 15 0 1 chr12 16475157 16475966 -127310489 - L1PA2 LINE L1 -4 6151 5344 2537 47 0 3 chr12 16475966 16476310 -127310145 + L1PA2 LINE L1 5017 5359 -787 268 326 171 8 chr12 16478091 16478220 -127308235 - MIR3 SINE MIR -49 159 10 323 266 169 0 chr12 16478497 16478621 -127307834 - MIR SINE MIR -32 230 86 * 391 320 34 29 chr12 16478609 16478784 -127307671 + MIR SINE MIR 15 190 -72 2190 101 0 10 chr12 16478878 16479174 -127307281 - AluSx SINE Alu -8 304 12 215 330 56 42 chr12 16480244 16480459 -127305996 - L2 LINE L2 -527 2787 2570 219 225 0 0 chr12 16481028 16481068 -127305387 + (ATG)n Simple_repeat Simple_repeat 3 42 0 1375 163 0 5 chr12 16481313 16481534 -127304921 - AluJb SINE Alu -54 258 39 2928 6 0 0 chr12 16482182 16482500 -127303955 + AluYb8 SINE Alu 1 318 0 354 287 99 39 chr12 16482572 16482753 -127303702 - MIR SINE MIR -50 212 21 188 390 43 14 chr12 16484422 16484563 -127301892 - L2 LINE L2 -232 3040 2896 315 275 9 37 chr12 16484596 16484705 -127301750 - L2 LINE L2 -501 2813 2708 234 62 0 0 chr12 16485551 16485583 -127300872 + (CA)n Simple_repeat Simple_repeat 2 33 0 544 261 83 22 chr12 16485635 16485815 -127300640 - L2 LINE L2 -939 2375 2185 554 292 91 18 chr12 16485843 16486062 -127300393 - MIR SINE MIR -11 251 17 355 309 36 29 chr12 16486266 16486405 -127300050 + MIR SINE MIR 106 245 -17 367 297 76 0 chr12 16486885 16487030 -127299425 + MIR SINE MIR 94 249 -13 33 43 0 0 chr12 16488046 16488093 -127298362 + AT_rich Low_complexity Low_complexity 1 47 0 2068 102 22 41 chr12 16488330 16488645 -127297810 + AluSx SINE Alu 1 309 -3 197 336 52 43 chr12 16489595 16489711 -127296744 + L3 LINE CR1 1411 1527 -50 206 355 56 0 chr12 16490204 16490311 -127296144 - MIR SINE MIR -2 260 148 2066 123 3 7 chr12 16490565 16490857 -127295598 + AluSq SINE Alu 4 294 -19 186 328 97 46 chr12 16490986 16491122 -127295333 - L2 LINE L2 -557 2757 2607 2354 89 7 0 chr12 16491122 16491425 -127295030 + AluSc SINE Alu 1 305 -4 186 328 97 46 chr12 16491425 16491483 -127294972 - L2 LINE L2 -707 2607 2553 2610 153 26 12 chr12 16491484 16492076 -127294379 - MER4E LTR ERV1 0 766 1 303 352 28 28 chr12 16492104 16492286 -127294169 - MIR3 SINE MIR -7 201 20 22 0 0 0 chr12 16492492 16492514 -127293941 + AT_rich Low_complexity Low_complexity 1 22 0 189 301 48 24 chr12 16492648 16492731 -127293724 + MER5A DNA MER1_type 89 173 -16 * 385 243 0 0 chr12 16492660 16492734 -127293721 - MER5A DNA MER1_type -90 99 26 4279 261 69 40 chr12 16493288 16495559 -127290896 + L1MB1 LINE L1 2 2025 -3945 1336 179 24 72 chr12 16495588 16495926 -127290529 - MLT2B3 LTR ERVL 0 554 236 6045 197 43 61 chr12 16495927 16496976 -127289479 + L1MB1 LINE L1 2866 3933 -2059 1000 62 8 0 chr12 16496976 16497105 -127289350 - L1PA7 LINE L1 -2 6152 6023 6045 197 43 61 chr12 16497105 16499417 -127287038 + L1MB1 LINE L1 3933 5992 0 186 43 0 0 chr12 16499650 16499673 -127286782 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 952 140 0 0 chr12 16499706 16499842 -127286613 + AluSq/x SINE Alu 6 141 -172 8387 177 34 8 chr12 16500246 16502192 -127284263 - L1PBa LINE L1 -2259 4603 2607 1705 194 3 0 chr12 16502211 16502500 -127283955 - AluJb SINE Alu -22 290 1 210 290 0 81 chr12 16503018 16503080 -127283375 - MIR3 SINE MIR -8 200 144 923 143 13 0 chr12 16503124 16503278 -127283177 - L1MD3 LINE L1 -14 7981 7826 3478 196 52 19 chr12 16503281 16503576 -127282879 - L1MA9 LINE L1 -38 6274 5990 2734 120 14 9 chr12 16503576 16504008 -127282447 + MER57B LTR ERV1 1 434 0 3478 196 52 19 chr12 16504008 16504516 -127281939 - L1MA9 LINE L1 -322 5990 5444 189 0 0 0 chr12 16504631 16504652 -127281803 + (T)n Simple_repeat Simple_repeat 1 21 0 48 0 0 0 chr12 16506189 16506237 -127280218 + AT_rich Low_complexity Low_complexity 1 48 0 33 25 0 0 chr12 16506457 16506497 -127279958 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr12 16507298 16507319 -127279136 + AT_rich Low_complexity Low_complexity 1 21 0 274 223 27 45 chr12 16507708 16507820 -127278635 - L1ME4a LINE L1 -14 6107 5998 239 243 57 0 chr12 16507807 16507877 -127278578 - L1MB2 LINE L1 -192 5979 5906 * 203 315 0 0 chr12 16508055 16508109 -127278346 + MER5C DNA MER1_type 1 54 -270 1071 223 64 11 chr12 16508122 16508409 -127278046 - MLT1A1 LTR MaLR -5 360 24 12028 207 27 16 chr12 16508485 16512279 -127274176 - L1PA16 LINE L1 0 6869 3038 726 182 0 8 chr12 16512279 16512411 -127274044 - FLAM_C SINE Alu 0 133 3 12028 207 27 16 chr12 16512411 16512552 -127273903 - L1PA16 LINE L1 -3831 3038 2900 11206 166 32 27 chr12 16513488 16516563 -127269892 - L1PA16 LINE L1 -3929 2920 169 264 202 53 32 chr12 16516564 16516658 -127269797 + MER5C DNA MER1_type 103 198 -126 2618 36 0 0 chr12 16516670 16517005 -127269450 - L1P LINE L1 -2957 3189 2855 204 231 0 0 chr12 16517041 16517080 -127269375 + MER5C DNA MER1_type 283 321 -3 434 260 8 0 chr12 16518112 16518235 -127268220 - L1MB2 LINE L1 -330 5791 5668 5779 120 7 7 chr12 16519088 16519515 -127266940 + L1PA13 LINE L1 4601 5027 -1136 2208 100 0 29 chr12 16519515 16519826 -127266629 + AluY SINE Alu 1 302 -9 5779 120 7 7 chr12 16519826 16519977 -127266478 + L1PA13 LINE L1 5027 5177 -986 252 100 0 0 chr12 16519977 16520017 -127266438 + (CAA)n Simple_repeat Simple_repeat 3 42 0 5779 120 7 7 chr12 16520017 16521008 -127265447 + L1PA13 LINE L1 5176 6162 -1 1538 115 56 4 chr12 16522141 16522411 -127264044 - L1MA8 LINE L1 -6 6285 6002 733 344 104 61 chr12 16522669 16523846 -127262609 + L2 LINE L2 2050 3270 -2 1065 270 65 39 chr12 16523996 16524381 -127262074 + MLT1J LTR MaLR 109 503 -8 297 176 59 0 chr12 16524425 16524493 -127261962 - L1MC4 LINE L1 0 8042 7971 320 300 17 25 chr12 16525179 16525299 -127261156 + HAL1 LINE L1 1008 1126 -1381 243 262 73 37 chr12 16525418 16525609 -127260846 + L1M4 LINE L1 4163 4360 -1786 302 247 82 75 chr12 16525689 16525835 -127260620 + L1MEd LINE L1 1021 1167 -4952 25 31 0 0 chr12 16526072 16526104 -127260351 + AT_rich Low_complexity Low_complexity 1 32 0 245 190 17 0 chr12 16526170 16526228 -127260227 + MER53 DNA DNA 128 186 -3 1197 317 103 38 chr12 16526492 16527528 -127258927 + L1M4 LINE L1 4041 5144 -1002 621 242 110 41 chr12 16527536 16527755 -127258700 + MIR SINE MIR 8 241 -21 291 327 123 89 chr12 16528136 16528552 -127257903 + L2 LINE L2 2843 3272 0 21 0 0 0 chr12 16528773 16528794 -127257661 + AT_rich Low_complexity Low_complexity 1 21 0 345 346 38 6 chr12 16529682 16529841 -127256614 - MIR3 SINE MIR -3 205 42 221 362 38 0 chr12 16530306 16530411 -127256044 + MIR SINE MIR 37 145 -63 475 237 224 0 chr12 16531016 16531168 -127255287 - MIR SINE MIR -1 261 76 216 218 36 0 chr12 16531575 16531630 -127254825 + CT-rich Low_complexity Low_complexity 2 58 0 461 219 60 49 chr12 16531844 16532027 -127254428 + L1MC5 LINE L1 7728 7912 -49 720 264 89 17 chr12 16532070 16532305 -127254150 - MIR SINE MIR -10 252 1 198 310 56 0 chr12 16532349 16532420 -127254035 - MIR SINE MIR -26 236 162 2451 69 0 0 chr12 16532825 16533131 -127253324 - AluY SINE Alu -5 306 1 224 170 85 0 chr12 16534601 16534648 -127251807 - L2 LINE L2 -1 3271 3221 207 310 28 14 chr12 16535000 16535071 -127251384 - MER5C DNA MER1_type -250 74 3 520 224 161 12 chr12 16535341 16535502 -127250953 - MER5A DNA MER1_type -1 188 4 344 164 0 0 chr12 16535678 16535733 -127250722 + Tigger5 DNA MER2_type 1 55 -2268 255 233 211 0 chr12 16535725 16535815 -127250640 + Tigger5 DNA MER2_type 2215 2323 0 * 2520 64 0 0 chr12 16536378 16536675 -127249780 + AluY SINE Alu 1 297 -14 281 228 309 0 chr12 16536840 16536976 -127249479 - L2 LINE L2 -10 3303 3126 276 355 89 10 chr12 16537022 16537225 -127249230 - L3 LINE CR1 -171 1406 1188 2503 57 0 3 chr12 16537312 16537610 -127248845 + AluY SINE Alu 1 297 -14 25 0 0 0 chr12 16538344 16538369 -127248086 + AT_rich Low_complexity Low_complexity 1 25 0 278 255 0 0 chr12 16538655 16538706 -127247749 + MER5A DNA MER1_type 9 59 -130 186 43 0 0 chr12 16539154 16539177 -127247278 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1887 166 0 0 chr12 16539180 16539464 -127246991 - AluSx SINE Alu -28 284 1 1838 138 0 24 chr12 16539612 16539901 -127246554 + AluJb SINE Alu 14 295 -17 2185 119 3 0 chr12 16539904 16540214 -127246241 + AluSx SINE Alu 1 311 -1 2101 218 51 22 chr12 16542342 16542791 -127243664 - MLT2B1 LTR ERVL -58 462 1 2397 156 14 35 chr12 16543039 16543474 -127242981 + MSTA LTR MaLR 1 426 -2 30 27 0 0 chr12 16543898 16543935 -127242520 + AT_rich Low_complexity Low_complexity 1 37 0 249 359 51 0 chr12 16543999 16544116 -127242339 - L2 LINE L2 -20 3293 3171 182 263 0 0 chr12 16544130 16544168 -127242287 - MIR SINE MIR -62 146 109 2136 99 3 0 chr12 16544269 16544584 -127241871 + AluSx SINE Alu 1 316 0 201 273 0 45 chr12 16546867 16546933 -127239522 + MIR SINE MIR 48 110 -98 32 43 0 0 chr12 16546942 16546988 -127239467 + AT_rich Low_complexity Low_complexity 1 46 0 1650 189 71 14 chr12 16547831 16548185 -127238270 + MLT1A2 LTR MaLR 1 374 0 348 300 130 20 chr12 16548504 16548704 -127237751 + L1ME LINE L1 5264 5485 -636 2366 67 27 0 chr12 16548784 16549081 -127237374 - AluY SINE Alu -6 305 1 204 402 12 0 chr12 16549081 16549163 -127237292 - L2 LINE L2 -42 3271 3189 2281 93 0 0 chr12 16549394 16549696 -127236759 - AluSx SINE Alu -10 302 1 313 308 49 42 chr12 16549756 16549899 -127236556 - L2 LINE L2 -411 2903 2760 2248 117 0 0 chr12 16550590 16550889 -127235566 - AluSc SINE Alu -10 299 1 25 0 0 0 chr12 16551134 16551159 -127235296 + AT_rich Low_complexity Low_complexity 1 25 0 289 260 16 94 chr12 16551945 16552072 -127234383 + MLT1I LTR MaLR 289 405 -4 458 264 23 58 chr12 16552140 16552314 -127234141 + L2 LINE L2 3146 3313 0 274 359 51 18 chr12 16552488 16552705 -127233750 - L2 LINE L2 -337 2977 2754 1581 84 5 5 chr12 16552712 16552914 -127233541 + AluSx SINE Alu 6 207 -105 568 96 0 12 chr12 16552927 16553010 -127233445 - Alu SINE Alu -11 301 220 210 171 0 0 chr12 16553149 16553184 -127233271 + (TA)n Simple_repeat Simple_repeat 2 36 0 186 43 0 0 chr12 16553184 16553207 -127233248 + (GA)n Simple_repeat Simple_repeat 2 24 0 489 333 128 41 chr12 16553576 16553942 -127232513 - L2 LINE L2 -91 3222 2825 323 269 67 92 chr12 16553949 16554077 -127232378 + L1 LINE L1 4258 4388 -1758 1578 139 92 31 chr12 16554077 16554212 -127232243 + AluSx SINE Alu 1 126 -186 180 0 0 0 chr12 16554212 16554232 -127232223 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1578 139 92 31 chr12 16554232 16554390 -127232065 + AluSx SINE Alu 126 312 0 323 269 67 92 chr12 16554390 16554607 -127231848 + L1 LINE L1 4388 4594 -1552 294 358 88 20 chr12 16555081 16555229 -127231226 + MIR3 SINE MIR 17 174 -34 7575 25 5 1 chr12 16555404 16556300 -127230155 - L1PA3 LINE L1 0 6155 5257 181 269 0 90 chr12 16557054 16557121 -127229334 - MIR SINE MIR -118 144 84 247 361 65 0 chr12 16558981 16559089 -127227366 + MIR SINE MIR 99 213 -49 7820 128 20 24 chr12 16559259 16560562 -127225893 + HSMAR2 DNA Mariner 3 1300 -2 201 109 0 65 chr12 16560565 16560611 -127225844 + (TGGG)n Simple_repeat Simple_repeat 3 45 0 2462 74 3 3 chr12 16561123 16561434 -127225021 - AluY SINE Alu 0 311 1 522 268 132 26 chr12 16562029 16562301 -127224154 - MLT1K LTR MaLR -21 567 267 438 346 107 7 chr12 16563714 16564003 -127222452 + L2 LINE L2 2215 2532 -782 266 317 102 61 chr12 16564046 16564292 -127222163 + MIR SINE MIR 6 261 -1 196 244 0 134 chr12 16564803 16564837 -127221618 + L2 LINE L2 3234 3252 -61 1442 233 93 92 chr12 16564837 16565002 -127221453 - MLT1E2 LTR MaLR 0 626 463 2154 43 6 93 chr12 16565002 16565326 -127221129 - AluY SINE Alu -15 296 1 1442 233 93 92 chr12 16565326 16565783 -127220672 - MLT1E2 LTR MaLR -163 463 3 196 244 0 134 chr12 16565783 16565830 -127220625 + L2 LINE L2 3252 3304 -9 319 294 83 0 chr12 16566162 16566271 -127220184 - L2 LINE L2 0 3272 3155 472 354 23 40 chr12 16566675 16567036 -127219419 - L2 LINE L2 -214 3058 2704 3666 65 23 0 chr12 16568042 16568515 -127217940 - L1PA7 LINE L1 0 6154 5671 2065 40 61 29 chr12 16569818 16570096 -127216359 + AluY SINE Alu 1 287 -24 1648 196 3 3 chr12 16570106 16570397 -127216058 - AluJo SINE Alu -21 291 1 246 281 0 0 chr12 16571324 16571381 -127215074 + L2 LINE L2 3216 3272 0 328 282 19 10 chr12 16571822 16571925 -127214530 - MIR SINE MIR -32 230 127 293 333 106 0 chr12 16573601 16573733 -127212722 + MIR SINE MIR 109 254 -8 2345 252 60 9 chr12 16575551 16576236 -127210219 - L1MD2 LINE L1 -2 6357 5646 433 254 102 0 chr12 16576334 16576452 -127210003 - MER94 DNA DNA -3 131 2 791 275 45 38 chr12 16580302 16580615 -127205840 - L2 LINE L2 0 3313 2999 216 208 21 0 chr12 16580610 16580658 -127205797 - MIR SINE MIR -1 261 213 * 1622 133 8 16 chr12 16581594 16581843 -127204612 + AluSx SINE Alu 64 310 -2 341 287 32 0 chr12 16581860 16581954 -127204501 - MER103 DNA DNA -4 162 66 534 287 60 31 chr12 16582194 16582419 -127204036 - MIR SINE MIR -10 252 15 731 284 126 30 chr12 16582884 16583359 -127203096 - LTR33 LTR ERVL 0 521 1 512 302 114 67 chr12 16583813 16584171 -127202284 + L2 LINE L2 2897 3271 -1 2262 87 3 0 chr12 16585669 16585956 -127200499 - AluSq SINE Alu -15 298 11 233 253 0 72 chr12 16586029 16586112 -127200343 + L2 LINE L2 2837 2913 -359 214 288 61 0 chr12 16588889 16588955 -127197500 + MIR SINE MIR 180 249 -13 28 79 0 0 chr12 16589630 16589693 -127196762 + AT_rich Low_complexity Low_complexity 1 63 0 2364 137 48 17 chr12 16591854 16592269 -127194186 + Tigger2a DNA MER2_type 5 432 -2 441 254 23 11 chr12 16592769 16592946 -127193509 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 357 24 0 0 chr12 16593689 16593731 -127192724 + (TA)n Simple_repeat Simple_repeat 2 43 0 734 327 100 66 chr12 16596984 16598036 -127188419 + L2 LINE L2 1715 2816 -497 2110 132 10 0 chr12 16598036 16598340 -127188115 + AluSq SINE Alu 1 307 -6 734 327 100 66 chr12 16598340 16598513 -127187942 + L2 LINE L2 2816 2982 -331 1153 261 37 8 chr12 16599024 16599399 -127187056 + L1ME1 LINE L1 5756 6141 -25 6684 200 37 11 chr12 16599468 16600896 -127185559 + L1 LINE L1 13 1478 -6087 5363 221 37 2 chr12 16600896 16602301 -127184154 + L1 LINE L1 3660 5113 -2452 680 115 36 14 chr12 16602302 16602441 -127184014 + GA-rich Low_complexity Low_complexity 3 144 0 198 276 66 13 chr12 16602441 16602517 -127183938 - L2 LINE L2 -831 2483 2404 666 202 0 17 chr12 16602526 16602645 -127183810 + FRAM SINE Alu 36 152 -24 904 252 33 4 chr12 16602677 16602919 -127183536 - L2 LINE L2 -931 2383 2135 2026 188 59 5 chr12 16604668 16605072 -127181383 - MSTB LTR MaLR 0 426 1 1875 164 14 8 chr12 16605165 16605518 -127180937 + L1MA6 LINE L1 5941 6295 -5 18557 176 18 18 chr12 16605602 16609334 -127177121 + L1M1 LINE L1 17 3749 -3816 1741 36 3 2 chr12 16609335 16609559 -127176896 - L1PA5 LINE L1 -163 5991 5764 14124 166 39 13 chr12 16609724 16610630 -127175825 - L1MA3 LINE L1 0 7724 6843 1120 60 13 0 chr12 16610630 16610779 -127175676 - L1PA4 LINE L1 -3 6152 6002 14124 166 39 13 chr12 16610779 16612541 -127173914 - L1MA3 LINE L1 -881 6843 5128 1713 154 70 22 chr12 16612541 16612899 -127173556 + THE1C LTR MaLR 1 375 0 9668 119 43 21 chr12 16612899 16614446 -127172009 + THE1C-int LTR MaLR 1 1580 0 1611 178 67 28 chr12 16614448 16614807 -127171648 + THE1C LTR MaLR 3 375 0 14124 166 39 13 chr12 16614807 16617500 -127168955 - L1MA3 LINE L1 -2596 5128 2195 1200 194 115 10 chr12 16617500 16617870 -127168585 - MSTA LTR MaLR 0 428 9 5148 184 44 9 chr12 16617877 16619350 -127167105 - L1MA3 LINE L1 -5365 2200 15 968 194 83 17 chr12 16620485 16620773 -127165682 - MER69 DNA AcHobo -26 2500 2194 497 336 77 4 chr12 16620875 16621134 -127165321 - ERVL LTR ERVL -1077 4687 4410 * 675 302 55 39 chr12 16621112 16621496 -127164959 - ERVL LTR ERVL -3178 2586 2197 377 200 12 12 chr12 16621531 16621606 -127164849 - MER44D DNA MER2_type -9 600 526 406 213 9 65 chr12 16621606 16621714 -127164741 + Tigger3b DNA MER2_type 1 102 -1129 * 4896 124 50 25 chr12 16621712 16622361 -127164094 + Tigger3b DNA MER2_type 274 954 -2074 2019 123 0 40 chr12 16622361 16622661 -127163794 - AluSx SINE Alu -24 288 1 4896 124 50 25 chr12 16622661 16622930 -127163525 + Tigger3b DNA MER2_type 954 1215 -16 1813 244 25 17 chr12 16622930 16623446 -127163009 + L1ME1 LINE L1 5642 6161 -5 525 168 15 84 chr12 16623486 16623617 -127162838 - L1PA16 LINE L1 -1 6165 6044 898 161 52 35 chr12 16624097 16624194 -127162261 + MER44D DNA MER2_type 1 95 -2396 357 24 0 0 chr12 16624194 16624236 -127162219 + (TG)n Simple_repeat Simple_repeat 1 42 0 898 161 52 35 chr12 16624236 16624368 -127162087 + MER44D DNA MER2_type 95 504 -105 2183 254 67 7 chr12 16624370 16625176 -127161279 - L1M4 LINE L1 -774 5441 4588 5690 261 66 19 chr12 16625208 16625826 -127160629 - L1MEc LINE L1 -2413 3802 3214 1054 187 9 57 chr12 16625826 16626056 -127160399 - MER20 DNA MER1_type 0 219 1 5690 261 66 19 chr12 16626056 16628991 -127157464 - L1MEc LINE L1 -3001 3214 37 1096 264 63 9 chr12 16628991 16629454 -127157001 - Charlie7 DNA MER1_type -352 2260 1773 3588 23 1 0 chr12 16629454 16629944 -127156511 - L1P LINE L1 -728 5427 4937 6384 6 0 1 chr12 16629944 16630653 -127155802 + L1PA2 LINE L1 5442 6152 -3 591 197 14 20 chr12 16630659 16630806 -127155649 - Charlie7 DNA MER1_type -823 1789 1644 678 251 170 19 chr12 16630816 16631139 -127155316 - Charlie7 DNA MER1_type -1834 778 407 476 265 55 32 chr12 16631158 16631377 -127155078 - Charlie7 DNA MER1_type -2338 274 51 25 31 0 0 chr12 16632507 16632539 -127153916 + AT_rich Low_complexity Low_complexity 1 32 0 726 270 42 12 chr12 16633125 16633384 -127153071 - LTR16A1 LTR ERVL 0 457 191 252 284 14 0 chr12 16633460 16633534 -127152921 - LTR16A1 LTR ERVL -378 79 5 962 252 37 8 chr12 16634546 16634788 -127151667 + MIR SINE MIR 6 254 -8 393 133 0 0 chr12 16635643 16635718 -127150737 + (CA)n Simple_repeat Simple_repeat 2 76 0 349 277 102 23 chr12 16636106 16636283 -127150172 - MIR SINE MIR 0 262 72 1802 120 66 15 chr12 16637718 16637992 -127148463 + AluSx SINE Alu 24 311 -1 22 0 0 0 chr12 16638335 16638357 -127148098 + AT_rich Low_complexity Low_complexity 1 22 0 415 301 24 8 chr12 16638823 16638946 -127147509 + MER5A DNA MER1_type 65 189 0 707 169 29 7 chr12 16638968 16639104 -127147351 - MER5B DNA MER1_type -39 139 1 235 204 60 17 chr12 16639654 16639737 -127146718 + MIR SINE MIR 91 141 -67 2571 41 0 0 chr12 16640099 16640393 -127146062 + AluY SINE Alu 1 294 -17 328 153 33 20 chr12 16640393 16640543 -127145912 + (TA)n Simple_repeat Simple_repeat 1 152 0 252 258 15 30 chr12 16640741 16640807 -127145648 - MER91A DNA MER1_type -97 99 35 518 328 84 42 chr12 16640909 16641217 -127145238 + MLT1K LTR MaLR 159 479 -109 219 279 16 126 chr12 16641268 16641522 -127144933 + L2 LINE L2 2440 2665 -649 293 184 0 0 chr12 16641674 16641723 -127144732 + Alu SINE Alu 1 49 -254 275 214 265 31 chr12 16642741 16642839 -127143616 + L2 LINE L2 3192 3312 -1 290 287 74 8 chr12 16643101 16643223 -127143232 + MIR SINE MIR 119 248 -14 279 0 0 0 chr12 16644656 16644687 -127141768 + (TG)n Simple_repeat Simple_repeat 1 31 0 401 374 55 24 chr12 16645130 16645552 -127140903 + L2 LINE L2 1703 2137 -1177 996 358 32 42 chr12 16645597 16646299 -127140156 + ERVL LTR ERVL 2072 2767 -2997 2065 156 23 59 chr12 16646299 16646742 -127139713 + MSTC LTR MaLR 2 428 0 996 358 32 42 chr12 16646742 16646827 -127139628 + ERVL LTR ERVL 2767 2851 -2913 1851 346 66 37 chr12 16647008 16647746 -127138709 + ERVL LTR ERVL 3388 4104 -1660 2109 147 0 0 chr12 16647746 16648058 -127138397 - AluSx SINE Alu 0 312 1 1851 346 66 37 chr12 16648058 16649199 -127137256 + ERVL LTR ERVL 4104 5383 -381 1660 216 27 16 chr12 16649327 16649697 -127136758 + MLT1A2 LTR MaLR 1 374 0 2207 116 69 17 chr12 16649889 16650235 -127136220 + THE1B LTR MaLR 1 364 0 2423 63 0 13 chr12 16651092 16651394 -127135061 + AluY SINE Alu 1 298 -13 409 162 0 0 chr12 16651394 16651462 -127134993 - AluJ/FRAM SINE Alu -14 298 231 202 332 252 7 chr12 16652777 16653051 -127133404 - L2 LINE L2 0 3272 2932 386 162 14 0 chr12 16653885 16653959 -127132496 + MER116 DNA Mariner 2 76 -4 186 43 0 0 chr12 16654024 16654047 -127132408 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 527 312 108 25 chr12 16654050 16654412 -127132043 - L1MEd LINE L1 -5101 1018 627 212 0 36 0 chr12 16654615 16654643 -127131812 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 2222 108 3 3 chr12 16654659 16654966 -127131489 - AluSc SINE Alu -2 307 1 1404 234 29 35 chr12 16655786 16656162 -127130293 + MLT1A2 LTR MaLR 1 374 0 378 127 7 7 chr12 16656186 16656258 -127130197 + L1MA7 LINE L1 5600 5671 -512 2928 128 15 19 chr12 16656258 16656719 -127129736 + MER4D LTR ERV1 1 459 -413 1898 154 10 3 chr12 16656719 16657025 -127129430 + MER4D LTR ERV1 596 903 0 2894 169 26 35 chr12 16657064 16657669 -127128786 + L1MA7 LINE L1 5689 6288 -3 240 59 0 0 chr12 16658305 16658339 -127128116 + (TA)n Simple_repeat Simple_repeat 2 35 0 184 250 115 39 chr12 16658520 16658624 -127127831 - MIR SINE MIR -70 192 81 255 302 85 31 chr12 16660302 16660431 -127126024 - MIR SINE MIR -78 184 49 1777 243 126 24 chr12 16660531 16660946 -127125509 - L1MB3 LINE L1 0 6994 6622 1926 128 3 38 chr12 16660946 16661259 -127125196 - AluSx SINE Alu -8 304 3 1777 243 126 24 chr12 16661259 16661763 -127124692 - L1MB3 LINE L1 -372 6622 5987 * 3870 260 82 28 chr12 16661733 16663573 -127122882 - L1MB3 LINE L1 -2444 4513 2506 1940 187 17 14 chr12 16663594 16663952 -127122503 + MLT1A1 LTR MaLR 6 364 -1 5442 214 84 39 chr12 16663957 16664708 -127121747 - L1MB3 LINE L1 -4566 2393 1677 2152 127 0 16 chr12 16664708 16665023 -127121432 - AluSg SINE Alu 0 310 1 5442 214 84 39 chr12 16665023 16666237 -127120218 - L1MB3 LINE L1 -5282 1677 1 203 229 0 0 chr12 16666814 16666862 -127119593 + L2 LINE L2 3263 3310 -3 2223 144 13 13 chr12 16668454 16668829 -127117626 - THE1C LTR MaLR 0 375 1 2204 99 3 3 chr12 16668968 16669262 -127117193 + AluSx SINE Alu 2 295 -17 250 211 0 0 chr12 16669346 16669398 -127117057 - L1ME4a LINE L1 -2 6119 6068 301 261 80 0 chr12 16669565 16669653 -127116802 - L1ME4a LINE L1 -2018 5790 5696 338 229 67 0 chr12 16669690 16669795 -127116660 - L1ME4a LINE L1 -437 5684 5573 2081 121 0 0 chr12 16670440 16670730 -127115725 - AluSx SINE Alu -22 290 1 1293 278 92 66 chr12 16671903 16672019 -127114436 - L2 LINE L2 -3 3310 3198 182 33 67 0 chr12 16672019 16672049 -127114406 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 1293 278 92 66 chr12 16672049 16672983 -127113472 - L2 LINE L2 -115 3198 2229 722 305 24 47 chr12 16676797 16677095 -127109360 - L3 LINE CR1 -571 1006 716 21 57 0 0 chr12 16677517 16677552 -127108903 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr12 16677721 16677744 -127108711 + AT_rich Low_complexity Low_complexity 1 23 0 2287 105 0 10 chr12 16679034 16679347 -127107108 - AluSg SINE Alu 0 310 1 198 263 0 0 chr12 16679516 16679573 -127106882 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 245 233 137 0 chr12 16679751 16679824 -127106631 - MIR SINE MIR -164 98 16 200 351 14 0 chr12 16680267 16680341 -127106114 + (TATATG)n Simple_repeat Simple_repeat 6 80 0 236 208 0 0 chr12 16680341 16680394 -127106061 - LTR66 LTR ERVL -164 446 394 549 220 0 8 chr12 16680733 16680851 -127105604 - MLT1D LTR MaLR 0 505 389 1333 113 10 41 chr12 16680851 16681217 -127105238 + MSTA LTR MaLR 1 428 0 1137 243 35 49 chr12 16681217 16681582 -127104873 - MLT1D LTR MaLR -112 393 34 184 100 50 33 chr12 16681769 16681829 -127104626 + (TTA)n Simple_repeat Simple_repeat 2 62 0 25 51 0 0 chr12 16681848 16681887 -127104568 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 16682938 16682959 -127103496 + AT_rich Low_complexity Low_complexity 1 21 0 1651 110 38 19 chr12 16683530 16683794 -127102661 + AluSx SINE Alu 29 297 -15 210 320 187 20 chr12 16684545 16684695 -127101760 - MIR SINE MIR 0 262 88 1824 121 26 11 chr12 16684714 16684986 -127101469 + AluSx SINE Alu 3 278 -34 1865 133 136 24 chr12 16685196 16685579 -127100876 + MSTA LTR MaLR 1 426 -2 757 290 147 36 chr12 16686806 16686878 -127099577 - L1ME3A LINE L1 -297 5873 5810 869 177 32 170 chr12 16686878 16687155 -127099300 + MER8 DNA MER2_type 1 239 0 757 290 147 36 chr12 16687155 16687549 -127098906 - L1ME3A LINE L1 -360 5810 5461 2151 202 33 2 chr12 16687549 16687999 -127098456 - MLT1C LTR MaLR -3 464 1 757 290 147 36 chr12 16687999 16689057 -127097398 - L1ME3A LINE L1 -709 5461 4178 404 247 11 0 chr12 16689064 16689153 -127097302 - L1MEc LINE L1 -1213 5728 5639 1131 244 61 46 chr12 16689153 16689498 -127096957 - MLT1A1 LTR MaLR 0 365 16 6259 183 45 2 chr12 16689513 16690789 -127095666 - L1MEc LINE L1 -1306 5635 4304 2527 259 58 40 chr12 16690805 16691387 -127095068 - L1MEc LINE L1 -2920 4021 3451 2209 121 0 6 chr12 16691387 16691701 -127094754 - AluSx SINE Alu 0 312 1 2527 259 58 40 chr12 16691701 16692855 -127093600 - L1MEc LINE L1 -3490 3451 2307 627 262 81 61 chr12 16692929 16693474 -127092981 - L1MEc LINE L1 -4869 2072 1517 28 61 0 0 chr12 16693641 16693690 -127092765 + AT_rich Low_complexity Low_complexity 1 49 0 514 351 50 29 chr12 16693788 16694067 -127092388 - L1MEc LINE L1 -5824 599 315 283 329 0 46 chr12 16694244 16694396 -127092059 - L2 LINE L2 -1 3312 3168 421 227 8 34 chr12 16694494 16694613 -127091842 - L2 LINE L2 -1305 2009 1894 204 262 66 16 chr12 16694836 16694897 -127091558 - MIR SINE MIR -119 89 26 333 172 0 0 chr12 16695675 16695739 -127090716 + (CA)n Simple_repeat Simple_repeat 2 65 0 447 63 0 0 chr12 16697116 16697179 -127089276 + (CA)n Simple_repeat Simple_repeat 2 64 0 285 220 20 10 chr12 16698237 16698337 -127088118 + CT-rich Low_complexity Low_complexity 5 105 0 318 239 122 52 chr12 16698362 16698575 -127087880 - MER5C DNA MER1_type -39 285 58 231 267 67 38 chr12 16698762 16698867 -127087588 - MLT1K LTR MaLR 0 588 481 684 362 37 28 chr12 16699685 16700149 -127086306 - L2 LINE L2 -622 2692 2225 1514 201 0 34 chr12 16700758 16701051 -127085404 + AluJo SINE Alu 9 291 -21 225 363 55 14 chr12 16701426 16701572 -127084883 - L2 LINE L2 -1069 2245 2094 198 143 0 0 chr12 16701917 16701952 -127084503 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 370 250 11 0 chr12 16703867 16703955 -127082500 + MIR SINE MIR 63 151 -111 306 284 60 17 chr12 16704046 16704162 -127082293 + MLT1J2 LTR MaLR 58 178 -272 442 326 15 0 chr12 16705415 16705547 -127080908 + L2 LINE L2 3138 3271 -1 188 294 88 0 chr12 16705650 16705718 -127080737 + MIR SINE MIR 77 150 -58 1943 144 10 10 chr12 16706604 16706902 -127079553 + AluSx SINE Alu 1 298 -14 5390 120 16 27 chr12 16707128 16708012 -127078443 + L1PB1 LINE L1 5274 6147 -4 1186 229 53 15 chr12 16709531 16709871 -127076584 - MLT1B LTR MaLR -5 385 33 23 0 0 0 chr12 16710489 16710512 -127075943 + AT_rich Low_complexity Low_complexity 1 23 0 22 89 0 0 chr12 16711627 16711672 -127074783 + AT_rich Low_complexity Low_complexity 1 45 0 207 179 0 0 chr12 16712187 16712226 -127074229 + (TG)n Simple_repeat Simple_repeat 2 40 0 1009 251 60 36 chr12 16713774 16714304 -127072151 - L1ME LINE L1 -3965 2296 1754 2455 82 3 0 chr12 16714304 16714610 -127071845 - AluSp SINE Alu -4 309 3 758 281 54 62 chr12 16714858 16715621 -127070834 - L1ME LINE L1 -4720 1360 618 1141 187 107 64 chr12 16715621 16715995 -127070460 + MLT1B LTR MaLR 1 390 0 758 281 54 62 chr12 16715995 16716094 -127070361 - L1ME LINE L1 -5462 618 520 6420 18 0 36 chr12 16716351 16717137 -127069318 - L1PA2 LINE L1 -2 6153 5396 228 286 14 0 chr12 16717418 16717488 -127068967 - L1ME LINE L1 -5939 131 61 1236 255 117 47 chr12 16718304 16719049 -127067406 + HAL1b LINE L1 535 1331 -17 2050 140 0 0 chr12 16719600 16719892 -127066563 - AluSx SINE Alu -20 292 1 312 131 0 33 chr12 16719895 16719956 -127066499 - AluSp SINE Alu -170 133 75 21 0 0 0 chr12 16720034 16720055 -127066400 + AT_rich Low_complexity Low_complexity 1 21 0 269 314 32 24 chr12 16720169 16720293 -127066162 + L2 LINE L2 2178 2302 -1012 358 307 31 110 chr12 16720361 16720589 -127065866 - L2 LINE L2 0 3272 3063 263 278 42 62 chr12 16720980 16721124 -127065331 + MIR SINE MIR 91 231 -31 283 301 169 0 chr12 16721296 16721432 -127065023 + MIR SINE MIR 52 210 -52 612 296 152 76 chr12 16723881 16724672 -127061783 + L3 LINE CR1 690 1540 -37 274 303 56 0 chr12 16725374 16725463 -127060992 + MIR SINE MIR 163 256 -6 198 383 32 21 chr12 16726019 16726113 -127060342 + L2 LINE L2 3174 3268 -4 533 325 68 46 chr12 16727365 16727864 -127058591 + L2 LINE L2 1709 2218 -1096 258 266 38 25 chr12 16727881 16727960 -127058495 + MIR3 SINE MIR 113 192 -16 944 171 0 13 chr12 16728253 16728411 -127058044 - FRAM SINE Alu -21 155 1 377 216 240 0 chr12 16728792 16728917 -127057538 + MIR SINE MIR 90 244 -18 432 55 0 0 chr12 16729062 16729117 -127057338 + (CA)n Simple_repeat Simple_repeat 1 55 0 2918 6 0 0 chr12 16730752 16731068 -127055387 + AluYb8 SINE Alu 1 316 -2 2889 184 21 10 chr12 16731284 16731782 -127054673 - L1MA7 LINE L1 0 6291 5783 396 0 0 0 chr12 16731782 16731826 -127054629 + (TG)n Simple_repeat Simple_repeat 2 45 0 2889 184 21 10 chr12 16731826 16731931 -127054524 - L1MA7 LINE L1 -508 5783 5681 182 316 18 0 chr12 16733214 16733271 -127053184 - MIR SINE MIR -114 94 37 191 100 0 50 chr12 16734347 16734387 -127052068 + (TATG)n Simple_repeat Simple_repeat 2 39 0 187 200 0 0 chr12 16734431 16734466 -127051989 - L2 LINE L2 -5 3308 3274 290 302 52 10 chr12 16734513 16734609 -127051846 + L2 LINE L2 3196 3295 -18 190 325 13 26 chr12 16734703 16734780 -127051675 - L3 LINE CR1 -93 1484 1409 1691 183 66 29 chr12 16734803 16735180 -127051275 - MLT2C1 LTR ERVL 0 397 7 1021 345 98 23 chr12 16735192 16735646 -127050809 - L3 LINE CR1 -184 1393 874 243 0 0 0 chr12 16735646 16735673 -127050782 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1021 345 98 23 chr12 16735673 16735871 -127050584 - L3 LINE CR1 -703 874 692 879 249 0 0 chr12 16736426 16736615 -127049840 - MER5A DNA MER1_type 0 189 1 339 271 74 8 chr12 16736699 16736821 -127049634 - L2 LINE L2 -23 3290 3161 632 212 67 12 chr12 16737996 16738161 -127048294 - L1MD3 LINE L1 -10 7985 7812 5034 187 25 20 chr12 16738600 16739722 -127046733 - L1MA10 LINE L1 -1067 5079 3953 5472 172 5 44 chr12 16739725 16741016 -127045439 + L1MA10 LINE L1 5086 6333 -1 329 286 38 53 chr12 16741204 16741337 -127045118 + MIR SINE MIR 70 200 -62 263 147 0 77 chr12 16741393 16741563 -127044892 + (TTA)n Simple_repeat Simple_repeat 1 157 0 513 291 92 39 chr12 16741596 16741802 -127044653 - MIR SINE MIR -23 239 23 183 204 0 0 chr12 16743403 16743452 -127043003 + (TG)n Simple_repeat Simple_repeat 2 50 0 424 193 45 142 chr12 16743887 16744063 -127042392 + MLT1D-int LTR MaLR 1213 1371 0 1521 234 76 39 chr12 16744063 16744524 -127041931 + MLT1D LTR MaLR 1 478 -27 532 290 9 55 chr12 16745453 16745670 -127040785 - MIR SINE MIR -24 238 32 423 275 36 99 chr12 16745878 16746100 -127040355 + MIR SINE MIR 37 244 -18 507 33 0 0 chr12 16747498 16747559 -127038896 + (CA)n Simple_repeat Simple_repeat 2 62 0 3166 216 102 42 chr12 16749592 16750627 -127035828 + L1MC4a LINE L1 6711 7808 0 2356 156 57 0 chr12 16750699 16751104 -127035351 - MSTA LTR MaLR 0 428 1 286 340 123 33 chr12 16751487 16751699 -127034756 - L2 LINE L2 -433 2881 2651 491 222 0 20 chr12 16751981 16752080 -127034375 + MLT1E LTR MaLR 67 163 -430 983 285 96 0 chr12 16752094 16752375 -127034080 + MLT1E LTR MaLR 286 593 0 1446 132 45 0 chr12 16752678 16752898 -127033557 - MER30 DNA MER1_type 0 230 1 930 287 125 34 chr12 16753398 16754061 -127032394 - L2 LINE L2 -3 3310 2602 343 337 65 35 chr12 16754919 16755088 -127031367 + MIR3 SINE MIR 24 197 -11 2108 129 0 0 chr12 16755252 16755547 -127030908 + AluSq SINE Alu 1 295 -18 304 179 26 0 chr12 16756488 16756566 -127029889 + CT-rich Low_complexity Low_complexity 3 82 0 23 78 0 0 chr12 16756679 16756730 -127029725 + AT_rich Low_complexity Low_complexity 1 51 0 37 23 0 0 chr12 16756854 16756898 -127029557 + AT_rich Low_complexity Low_complexity 1 44 0 358 280 108 19 chr12 16757041 16757255 -127029200 - L1M4 LINE L1 -2693 3453 3221 950 147 82 27 chr12 16757265 16757449 -127029006 - L1PA16 LINE L1 0 6166 5973 302 239 28 14 chr12 16757743 16757814 -127028641 + MER5B DNA MER1_type 1 72 -106 22 35 0 0 chr12 16759388 16759417 -127027038 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 16759694 16759722 -127026733 + AT_rich Low_complexity Low_complexity 1 28 0 1612 180 3 22 chr12 16760002 16760318 -127026137 - AluJo SINE Alu -2 310 1 2174 117 3 0 chr12 16760753 16761053 -127025402 + AluSp SINE Alu 1 301 -12 917 232 50 9 chr12 16761416 16761636 -127024819 - MIR SINE MIR 0 262 34 21 0 0 0 chr12 16764250 16764271 -127022184 + AT_rich Low_complexity Low_complexity 1 21 0 443 224 0 90 chr12 16764459 16764593 -127021862 - MIR SINE MIR -110 152 31 21 36 0 0 chr12 16765112 16765140 -127021315 + AT_rich Low_complexity Low_complexity 1 28 0 183 42 0 0 chr12 16765251 16765275 -127021180 + (A)n Simple_repeat Simple_repeat 1 24 0 2065 142 0 0 chr12 16765644 16765940 -127020515 - AluSx SINE Alu -16 296 1 21 0 0 0 chr12 16766172 16766193 -127020262 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr12 16766314 16766363 -127020092 + AT_rich Low_complexity Low_complexity 1 49 0 300 373 4 66 chr12 16766561 16766805 -127019650 + L3 LINE CR1 985 1213 -364 5438 228 55 47 chr12 16766965 16767722 -127018733 + L1MB8 LINE L1 16 765 -5881 495 0 0 0 chr12 16767722 16767777 -127018678 + (CA)n Simple_repeat Simple_repeat 2 56 0 5438 228 55 47 chr12 16767777 16768613 -127017842 + L1MB8 LINE L1 765 1595 -5051 198 0 0 0 chr12 16768613 16768635 -127017820 + (CA)n Simple_repeat Simple_repeat 2 23 0 5438 228 55 47 chr12 16768635 16769142 -127017313 + L1MB8 LINE L1 1595 2096 -4550 4888 183 34 18 chr12 16769161 16771144 -127015311 + L1MB8 LINE L1 4658 6670 -6 903 162 21 90 chr12 16772660 16772894 -127013561 - L1MC1 LINE L1 0 6333 6116 23 0 0 0 chr12 16772923 16772946 -127013509 + AT_rich Low_complexity Low_complexity 1 23 0 423 0 0 0 chr12 16773143 16773190 -127013265 + (CA)n Simple_repeat Simple_repeat 2 48 0 1872 193 95 25 chr12 16773400 16773886 -127012569 - MLT2B1 LTR ERVL 0 520 1 207 95 71 0 chr12 16774089 16774131 -127012324 + A-rich Low_complexity Low_complexity 2 46 0 238 300 136 0 chr12 16774207 16774317 -127012138 + MIR SINE MIR 63 187 -75 340 298 46 71 chr12 16774596 16774799 -127011656 - MIR SINE MIR -50 212 16 801 183 61 17 chr12 16775559 16775739 -127010716 + MER5A DNA MER1_type 1 188 -1 718 0 0 0 chr12 16776173 16776257 -127010198 + L1PA2 LINE L1 6069 6152 -3 603 112 0 0 chr12 16776519 16776617 -127009838 + (CCA)n Simple_repeat Simple_repeat 1 98 0 186 329 12 24 chr12 16776619 16776701 -127009754 - MIR SINE MIR -109 153 73 530 256 55 24 chr12 16779017 16779181 -127007274 + LTR33A LTR ERVL 18 186 -337 614 275 138 4 chr12 16779313 16779560 -127006895 + LTR33A LTR ERVL 244 523 0 467 305 46 0 chr12 16780234 16780365 -127006090 + MIR3 SINE MIR 39 175 -33 569 286 85 5 chr12 16781133 16781322 -127005133 + MIR SINE MIR 48 255 -7 213 39 0 0 chr12 16781322 16781348 -127005107 + (TTA)n Simple_repeat Simple_repeat 2 27 0 382 340 13 13 chr12 16781355 16781505 -127004950 + L2 LINE L2 3164 3313 0 * 1961 138 0 3 chr12 16781881 16782254 -127004201 - AluSc SINE Alu 0 374 3 21 0 0 0 chr12 16782449 16782470 -127003985 + AT_rich Low_complexity Low_complexity 1 21 0 240 274 52 89 chr12 16782478 16782613 -127003842 - MIR SINE MIR -50 212 83 2409 66 0 3 chr12 16783268 16783569 -127002886 - AluY SINE Alu -11 300 1 3382 197 44 95 chr12 16783815 16784243 -127002212 + L1MC4 LINE L1 6918 7366 -676 180 0 0 0 chr12 16784243 16784263 -127002192 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 3382 197 44 95 chr12 16784263 16784529 -127001926 + L1MC4 LINE L1 7366 7644 -398 1918 176 0 0 chr12 16784529 16784835 -127001620 + AluJo SINE Alu 1 306 -6 3382 197 44 95 chr12 16784835 16785318 -127001137 + L1MC4 LINE L1 7644 8036 -6 545 272 77 35 chr12 16786158 16786327 -127000128 - MIR SINE MIR -60 202 27 1313 199 63 102 chr12 16786712 16787108 -126999347 + Charlie4a DNA MER1_type 4 377 -1584 620 13 0 0 chr12 16787108 16787184 -126999271 - L1PA2 LINE L1 -6 6149 6074 1313 199 63 102 chr12 16787184 16787309 -126999146 + Charlie4a DNA MER1_type 377 505 -3 1899 179 89 21 chr12 16788912 16789349 -126997106 - MLT1C LTR MaLR 0 467 1 441 284 222 0 chr12 16792361 16792562 -126993893 + MIR SINE MIR 19 262 0 515 269 82 12 chr12 16792579 16792750 -126993705 - MIR SINE MIR -31 231 49 27 0 0 0 chr12 16792843 16792870 -126993585 + AT_rich Low_complexity Low_complexity 1 27 0 282 284 49 0 chr12 16793162 16793243 -126993212 + MER117 DNA MER1_type 77 161 -36 198 335 72 26 chr12 16793531 16793683 -126992772 + L2 LINE L2 3075 3233 -39 22 70 0 0 chr12 16793728 16793771 -126992684 + AT_rich Low_complexity Low_complexity 1 43 0 2555 58 0 3 chr12 16793942 16794254 -126992201 + AluY SINE Alu 1 311 0 22 0 0 0 chr12 16796021 16796043 -126990412 + AT_rich Low_complexity Low_complexity 1 22 0 400 319 30 24 chr12 16796452 16796618 -126989837 + MIR SINE MIR 1 167 -95 448 267 33 0 chr12 16796648 16796768 -126989687 + MER94 DNA DNA 1 124 -10 1795 268 113 6 chr12 16798399 16799037 -126987418 + L2 LINE L2 1791 2496 -818 1551 232 45 49 chr12 16799047 16799535 -126986920 + L2 LINE L2 2827 3312 -1 268 261 15 0 chr12 16799552 16799617 -126986838 + L2 LINE L2 3207 3272 0 345 247 36 0 chr12 16799672 16799838 -126986617 + (TA)n Simple_repeat Simple_repeat 2 173 0 558 246 15 35 chr12 16801331 16801534 -126984921 + L1MC3 LINE L1 1 199 -5846 2294 215 49 63 chr12 16801546 16801754 -126984701 + L1MC3 LINE L1 1093 1302 -5443 1463 118 0 0 chr12 16801754 16801958 -126984497 + AluY SINE Alu 99 302 -9 2294 215 49 63 chr12 16801958 16802782 -126983673 + L1MC3 LINE L1 1302 2312 -4433 1064 239 12 16 chr12 16802783 16803026 -126983429 - MLT1A1 LTR MaLR -123 242 1 244 255 207 0 chr12 16803034 16803179 -126983276 + L1MC3 LINE L1 3928 4102 -2462 * 4063 249 21 27 chr12 16803168 16804483 -126981972 + L1MC3 LINE L1 4445 5752 -812 * 10629 197 51 29 chr12 16804478 16808200 -126978255 + L1MC1 LINE L1 942 4581 -2032 1994 153 13 0 chr12 16808200 16808508 -126977947 + AluSx SINE Alu 1 312 0 10629 197 51 29 chr12 16808508 16809927 -126976528 + L1MC1 LINE L1 4581 6354 -259 270 81 0 0 chr12 16809927 16809964 -126976491 + (TA)n Simple_repeat Simple_repeat 2 38 0 10629 197 51 29 chr12 16809964 16810230 -126976225 + L1MC1 LINE L1 6354 6613 0 3035 172 25 20 chr12 16810226 16810832 -126975623 + L1MC3 LINE L1 5734 6342 -1861 * 372 356 22 40 chr12 16810887 16811162 -126975293 + L2 LINE L2 2599 2868 -446 23 86 0 0 chr12 16811755 16811813 -126974642 + AT_rich Low_complexity Low_complexity 1 58 0 266 227 80 13 chr12 16812899 16812974 -126973481 + L2 LINE L2 3232 3311 -2 235 220 20 0 chr12 16812974 16813024 -126973431 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 275 338 107 28 chr12 16813161 16813478 -126972977 + L2 LINE L2 2633 2974 -340 217 159 136 0 chr12 16813584 16813628 -126972827 + L2 LINE L2 3264 3313 0 389 292 70 22 chr12 16815056 16815241 -126971214 + MIR SINE MIR 3 196 -66 267 326 95 0 chr12 16815804 16815899 -126970556 - L2 LINE L2 -2 3311 3208 2368 68 16 3 chr12 16816093 16816400 -126970055 + AluY SINE Alu 1 311 0 272 159 0 16 chr12 16816927 16816990 -126969465 + (TA)n Simple_repeat Simple_repeat 1 62 0 29 0 0 0 chr12 16817345 16817374 -126969081 + AT_rich Low_complexity Low_complexity 1 29 0 312 159 16 16 chr12 16818393 16818456 -126967999 + MLT1G LTR MaLR 516 578 -12 21 36 0 0 chr12 16818754 16818782 -126967673 + AT_rich Low_complexity Low_complexity 1 28 0 103 66 0 13 chr12 16819415 16819642 -126966813 + AT_rich Low_complexity Low_complexity 1 224 0 2276 84 13 7 chr12 16820014 16820322 -126966133 + AluSg SINE Alu 1 310 0 22 0 0 0 chr12 16821068 16821090 -126965365 + AT_rich Low_complexity Low_complexity 1 22 0 630 295 6 0 chr12 16821262 16821445 -126965010 + MIR SINE MIR 40 223 -39 645 248 73 24 chr12 16822693 16822899 -126963556 - L2 LINE L2 0 3313 3098 337 290 84 19 chr12 16823201 16823463 -126962992 - L1M4 LINE L1 -1447 4699 4421 25 31 0 0 chr12 16823510 16823542 -126962913 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr12 16823635 16823664 -126962791 + AT_rich Low_complexity Low_complexity 1 29 0 2185 145 57 5 chr12 16824187 16824594 -126961861 - MSTA LTR MaLR 0 428 1 360 103 0 0 chr12 16825387 16825445 -126961010 + (TG)n Simple_repeat Simple_repeat 1 58 0 316 321 164 0 chr12 16825724 16825864 -126960591 - MIR3 SINE MIR 0 208 46 243 0 0 0 chr12 16827469 16827496 -126958959 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 183 176 24 153 chr12 16827674 16827759 -126958696 + L2 LINE L2 2318 2391 -923 * 954 254 62 0 chr12 16827694 16827934 -126958521 + MIR SINE MIR 8 262 0 39 22 0 0 chr12 16827966 16828012 -126958443 + AT_rich Low_complexity Low_complexity 1 46 0 843 150 169 0 chr12 16828200 16828360 -126958095 - MER5A DNA MER1_type -2 187 1 342 300 120 51 chr12 16828381 16828757 -126957698 - L1ME LINE L1 -503 5659 5255 341 307 90 71 chr12 16828952 16829219 -126957236 - L1ME LINE L1 -1134 5012 4741 407 278 156 35 chr12 16829609 16829897 -126956558 - L1ME LINE L1 -2786 3360 3038 574 328 48 61 chr12 16830061 16830521 -126955934 - HAL1 LINE L1 -983 1524 1071 1936 126 37 3 chr12 16831135 16831429 -126955026 + AluSx SINE Alu 1 304 -8 535 217 77 0 chr12 16832058 16832201 -126954254 + MER103 DNA DNA 3 156 -10 2491 64 0 6 chr12 16832333 16832646 -126953809 + AluY SINE Alu 1 311 0 212 211 19 0 chr12 16835165 16835217 -126951238 + (TA)n Simple_repeat Simple_repeat 1 53 0 517 285 59 54 chr12 16835479 16835700 -126950755 - MIR SINE MIR -38 224 3 264 367 22 11 chr12 16835825 16835915 -126950540 - L2 LINE L2 -241 3031 2941 809 244 5 24 chr12 16836583 16836792 -126949663 + L1ME1 LINE L1 49 253 -6143 757 89 28 39 chr12 16836815 16836994 -126949461 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 1849 158 0 0 chr12 16837020 16837298 -126949157 + AluSx SINE Alu 3 280 -32 180 0 0 0 chr12 16837307 16837327 -126949128 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2209 285 57 50 chr12 16837333 16838523 -126947932 + L1ME1 LINE L1 269 1472 -4924 2028 150 0 3 chr12 16838523 16838836 -126947619 + AluSx SINE Alu 1 312 0 2209 285 57 50 chr12 16838836 16839092 -126947363 + L1ME1 LINE L1 1472 1725 -4671 2106 267 66 13 chr12 16839098 16840262 -126946193 + L1ME1 LINE L1 1916 3113 -3102 4960 233 73 40 chr12 16840272 16840407 -126946048 + L1ME1 LINE L1 3696 3825 -2410 306 50 0 0 chr12 16840407 16840447 -126946008 + (CA)n Simple_repeat Simple_repeat 1 40 0 4960 233 73 40 chr12 16840447 16842735 -126943720 + L1ME1 LINE L1 3825 6224 -11 32 67 0 0 chr12 16842852 16842912 -126943543 + AT_rich Low_complexity Low_complexity 1 60 0 2174 104 0 13 chr12 16843183 16843490 -126942965 + AluSq SINE Alu 1 303 -10 321 318 23 8 chr12 16844373 16844502 -126941953 + MER103 DNA DNA 32 162 -4 281 151 38 0 chr12 16844678 16844731 -126941724 - Charlie5 DNA MER1_type -28 2584 2530 21 0 0 0 chr12 16844766 16844787 -126941668 + AT_rich Low_complexity Low_complexity 1 21 0 1332 151 0 13 chr12 16844800 16845032 -126941423 + L1PA16 LINE L1 5938 6166 0 1510 55 0 0 chr12 16845113 16845296 -126941159 + LTR17 LTR ERV1 1 183 -597 4481 32 0 4 chr12 16845296 16845823 -126940632 - L1PA5 LINE L1 -1610 4536 4010 7015 61 1 2 chr12 16845823 16847427 -126939028 + L1PA5 LINE L1 4550 6152 -2 4508 64 40 0 chr12 16847435 16848012 -126938443 + LTR17 LTR ERV1 181 780 0 920 164 32 25 chr12 16848026 16848213 -126938242 - MER33 DNA MER1_type -248 76 1 198 339 0 31 chr12 16848334 16848399 -126938056 - MIR SINE MIR -125 83 21 2289 88 0 13 chr12 16848528 16848835 -126937620 + AluY SINE Alu 1 303 -8 2026 152 45 20 chr12 16849550 16849905 -126936550 - THE1B LTR MaLR 0 364 1 400 291 18 9 chr12 16850476 16850586 -126935869 + MER5A DNA MER1_type 48 158 -31 262 277 227 21 chr12 16852009 16852150 -126934305 - MLT1K LTR MaLR 0 588 419 226 0 59 0 chr12 16852166 16852200 -126934255 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 331 293 19 19 chr12 16852293 16852399 -126934056 - MLT1K LTR MaLR -368 220 115 229 182 36 0 chr12 16852967 16853022 -126933433 + T-rich Low_complexity Low_complexity 5 61 0 1162 184 0 34 chr12 16853253 16853492 -126932963 + AluJb SINE Alu 75 305 -7 399 262 113 85 chr12 16853711 16853993 -126932462 + L1ME4a LINE L1 5631 5920 -201 242 269 11 32 chr12 16855014 16855107 -126931348 + CT-rich Low_complexity Low_complexity 4 94 0 2248 181 2 5 chr12 16855163 16855560 -126930895 + MER57A LTR ERV1 8 403 0 1454 198 160 7 chr12 16855749 16856174 -126930281 + LTR54B LTR ERV1 7 496 -2 977 211 112 74 chr12 16856304 16856627 -126929828 + MLT1D LTR MaLR 58 392 -113 458 336 47 32 chr12 16856902 16857155 -126929300 - MIR SINE MIR -1 261 5 800 189 0 0 chr12 16857361 16857483 -126928972 + FLAM_C SINE Alu 3 124 -19 23 0 0 0 chr12 16857484 16857507 -126928948 + AT_rich Low_complexity Low_complexity 1 23 0 1725 197 54 8 chr12 16858011 16858382 -126928073 + MLT1B LTR MaLR 1 388 -2 186 267 50 17 chr12 16858395 16858455 -126928000 - MER5B DNA MER1_type -52 126 65 32 43 0 0 chr12 16858550 16858596 -126927859 + AT_rich Low_complexity Low_complexity 1 46 0 349 280 51 8 chr12 16859418 16859536 -126926919 + MER94 DNA DNA 5 127 -7 245 298 24 24 chr12 16860754 16860838 -126925617 - MIR SINE MIR -78 130 47 824 240 22 0 chr12 16860958 16861141 -126925314 + MER5A DNA MER1_type 2 188 -1 2138 108 0 53 chr12 16861437 16861760 -126924695 - AluSx SINE Alu -6 306 1 1111 219 27 10 chr12 16862802 16863127 -126923328 - MLT1A1 LTR MaLR -2 363 1 1092 148 20 30 chr12 16863850 16863998 -126922457 + L1MA4 LINE L1 6057 6204 -96 1988 94 3 28 chr12 16863998 16864284 -126922171 - AluSp SINE Alu -12 301 23 1092 148 20 30 chr12 16864284 16864337 -126922118 + L1MA4 LINE L1 6204 6256 -44 32 0 0 0 chr12 16864352 16864384 -126922071 + AT_rich Low_complexity Low_complexity 1 32 0 239 231 93 56 chr12 16864576 16864684 -126921771 + L1ME LINE L1 839 950 -5120 9029 165 32 13 chr12 16864688 16866016 -126920439 - L1PBa LINE L1 -2598 4264 2963 4982 37 2 0 chr12 16866016 16866615 -126919840 - L1PA4 LINE L1 -1 6154 5555 9029 165 32 13 chr12 16866615 16868223 -126918232 - L1PBa LINE L1 -3899 2963 1107 652 165 0 47 chr12 16868223 16868350 -126918105 - AluSq/x SINE Alu -191 121 1 184 320 141 0 chr12 16868851 16868929 -126917526 - L2 LINE L2 -47 3225 3137 2238 161 84 0 chr12 16869488 16869905 -126916550 - LTR47A LTR ERVL 0 452 1 315 309 27 18 chr12 16870889 16870999 -126915456 - MIR3 SINE MIR -13 195 85 6803 70 11 0 chr12 16871027 16872423 -126914032 - L1PA7 LINE L1 0 6154 4753 1555 218 29 35 chr12 16873623 16873939 -126912516 + MLT1A2 LTR MaLR 1 316 -58 3840 113 6 2 chr12 16873939 16874462 -126911993 - MER1A DNA MER1_type 0 527 3 1555 218 29 35 chr12 16874462 16874521 -126911934 + MLT1A2 LTR MaLR 316 374 0 1569 186 100 0 chr12 16874852 16875163 -126911292 - MER7A DNA MER2_type -5 341 2 396 199 81 99 chr12 16876324 16876485 -126909970 - MER5A DNA MER1_type -11 178 21 284 301 55 27 chr12 16876711 16876857 -126909598 + L1ME2 LINE L1 107 256 -6140 13611 186 36 24 chr12 16876876 16881105 -126905350 + L1MA4A LINE L1 568 4747 -2258 749 43 0 0 chr12 16881105 16881196 -126905259 + L1PA5 LINE L1 6054 6145 -9 13611 186 36 24 chr12 16881196 16882326 -126904129 + L1MA4A LINE L1 4747 5863 -1142 228 35 0 0 chr12 16882326 16882355 -126904100 + (CAA)n Simple_repeat Simple_repeat 2 30 0 13611 186 36 24 chr12 16882355 16882418 -126904037 + L1MA4A LINE L1 5863 5924 -1081 2293 78 0 0 chr12 16882418 16882701 -126903754 + AluSc SINE Alu 3 285 -24 13611 186 36 24 chr12 16882701 16883629 -126902826 + L1MA4A LINE L1 5924 6999 -6 853 246 46 4 chr12 16883645 16883925 -126902530 + L1ME2 LINE L1 2286 2577 -3638 452 283 46 85 chr12 16884360 16884643 -126901812 + L1ME2 LINE L1 2615 2886 -3329 280 186 127 0 chr12 16884690 16884808 -126901647 + L1ME2 LINE L1 3177 3309 -2906 2738 245 69 9 chr12 16884829 16885765 -126900690 + L1ME2 LINE L1 5233 6223 -10 2318 96 3 0 chr12 16885965 16886268 -126900187 - AluSp SINE Alu -9 304 1 3927 151 12 29 chr12 16887918 16888321 -126898134 + LTR51 LTR ERV1 1 389 -282 553 91 0 0 chr12 16888321 16888398 -126898057 + MADE1 DNA Mariner 1 77 -3 3927 151 12 29 chr12 16888398 16888676 -126897779 + LTR51 LTR ERV1 389 670 -1 267 339 104 0 chr12 16888845 16888960 -126897495 - MIR SINE MIR -115 147 21 764 256 46 25 chr12 16890760 16890998 -126895457 - MIR SINE MIR -18 244 2 340 219 101 59 chr12 16892626 16892745 -126893710 - MIR SINE MIR -130 132 9 288 305 110 8 chr12 16892955 16893073 -126893382 + MIR SINE MIR 19 148 -114 519 295 54 6 chr12 16893298 16893464 -126892991 + MER5B DNA MER1_type 4 177 -1 404 216 49 0 chr12 16895583 16895685 -126890770 + HAL1 LINE L1 2003 2109 -398 288 214 107 38 chr12 16895761 16895892 -126890563 + HAL1 LINE L1 2241 2380 -127 441 153 22 44 chr12 16896674 16896811 -126889644 + GA-rich Low_complexity Low_complexity 3 136 0 425 271 49 74 chr12 16897657 16897941 -126888514 - L1MC5 LINE L1 -45 7916 7640 974 89 0 0 chr12 16897980 16898127 -126888328 - AluSc SINE Alu 0 304 158 1005 297 35 10 chr12 16898247 16898640 -126887815 - L1MC4 LINE L1 -895 6977 6500 1192 175 68 5 chr12 16898929 16899135 -126887320 - MLT2B2 LTR ERVL -296 219 1 435 308 100 16 chr12 16899205 16899455 -126887000 - L1M4 LINE L1 -1302 4844 4574 268 327 55 21 chr12 16899502 16899817 -126886638 + L1ME LINE L1 4733 5069 -1077 709 224 57 0 chr12 16899848 16900040 -126886415 - L1MA4 LINE L1 -11 6289 6087 274 296 56 19 chr12 16900034 16900250 -126886205 + L1ME LINE L1 5101 5324 -822 * 329 337 96 27 chr12 16900257 16900444 -126886011 + L1ME LINE L1 5604 5803 -367 627 226 9 91 chr12 16901471 16901504 -126884951 - L1MA4 LINE L1 -95 6205 6171 1608 135 92 8 chr12 16901504 16901787 -126884668 - AluSg SINE Alu 0 305 1 627 226 9 91 chr12 16901787 16901982 -126884473 - L1MA4 LINE L1 -129 6171 5995 2349 86 0 13 chr12 16902000 16902303 -126884152 + AluSp SINE Alu 3 301 -12 387 283 0 0 chr12 16902787 16902879 -126883576 + MER5A DNA MER1_type 13 104 -85 196 376 71 7 chr12 16903047 16903188 -126883267 - MIR SINE MIR -111 151 2 2772 272 52 30 chr12 16904076 16905152 -126881303 + L1PA15 LINE L1 2 1558 -5229 3230 161 20 75 chr12 16905152 16905883 -126880572 + LTR8 LTR ERV1 1 691 0 19320 86 20 11 chr12 16905883 16908180 -126878275 + HUERS-P1 LTR ERV1 1 2328 -3935 203 79 26 0 chr12 16908180 16908218 -126878237 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 19320 86 20 11 chr12 16908218 16908594 -126877861 + HUERS-P1 LTR ERV1 2328 2699 -3564 229 260 0 0 chr12 16908595 16908645 -126877810 + PABL_B LTR ERV1 1 50 -617 944 287 68 59 chr12 16908653 16909311 -126877144 + PABL_B LTR ERV1 4 667 0 24424 78 33 15 chr12 16909311 16912792 -126873663 + HUERS-P1 LTR ERV1 2697 6241 -22 3392 155 16 76 chr12 16912842 16913577 -126872878 + LTR8 LTR ERV1 1 691 0 16783 201 16 22 chr12 16913624 16918844 -126867611 + L1PA15 LINE L1 1624 6813 -3 4160 253 32 42 chr12 16919248 16920550 -126865905 + L1MD1 LINE L1 3737 5022 -1124 1641 189 25 0 chr12 16920550 16920835 -126865620 - AluJo SINE Alu -20 292 1 4160 253 32 42 chr12 16920835 16921067 -126865388 + L1MD1 LINE L1 5022 5255 -891 2410 219 93 14 chr12 16921055 16921691 -126864764 + L1MD1 LINE L1 5555 6240 -2 * 245 240 22 17 chr12 16921788 16921967 -126864488 + (TA)n Simple_repeat Simple_repeat 1 180 0 779 266 96 13 chr12 16922081 16922310 -126864145 + LTR16C LTR ERVL 239 486 -5 183 283 58 58 chr12 16922526 16922646 -126863809 + MIR SINE MIR 70 189 -73 1115 176 0 0 chr12 16923437 16923613 -126862842 - AluJb SINE Alu -5 307 132 319 224 289 46 chr12 16923623 16923775 -126862680 + MIR SINE MIR 73 261 -1 219 268 14 0 chr12 16923776 16923847 -126862608 + (TTA)n Simple_repeat Simple_repeat 2 73 0 5386 157 18 28 chr12 16924206 16924829 -126861626 - L1MC2 LINE L1 -10 6334 5723 1658 183 161 0 chr12 16924829 16925195 -126861260 - MSTA LTR MaLR 0 428 4 5386 157 18 28 chr12 16925195 16925602 -126860853 - L1MC2 LINE L1 -621 5723 5314 580 368 147 28 chr12 16925703 16926621 -126859834 - L2 LINE L2 -341 2973 1947 187 308 39 13 chr12 16926681 16926759 -126859696 + L2 LINE L2 3234 3313 0 1829 136 44 0 chr12 16927014 16927331 -126859124 - L1MB2 LINE L1 -2 6169 5839 194 283 167 42 chr12 16929029 16929149 -126857306 - MIR3 SINE MIR -42 166 32 802 136 136 73 chr12 16929465 16929671 -126856784 + MER20 DNA MER1_type 1 219 0 360 88 0 0 chr12 16930942 16930999 -126855456 + (TC)n Simple_repeat Simple_repeat 1 57 0 411 38 0 0 chr12 16930999 16931052 -126855403 + (TG)n Simple_repeat Simple_repeat 2 54 0 206 282 184 0 chr12 16932671 16932774 -126853681 - MIR SINE MIR -74 188 67 1756 209 43 45 chr12 16933227 16933690 -126852765 + MLT1C LTR MaLR 6 467 0 240 311 22 74 chr12 16934435 16934570 -126851885 + MIR SINE MIR 16 143 -65 * 519 335 23 17 chr12 16934542 16934718 -126851737 + MIR SINE MIR 59 235 -27 290 376 32 32 chr12 16934743 16934868 -126851587 + L2 LINE L2 3133 3257 -15 350 264 208 0 chr12 16936126 16936251 -126850204 + MIR SINE MIR 112 262 0 23 54 0 0 chr12 16936263 16936300 -126850155 + AT_rich Low_complexity Low_complexity 1 37 0 3192 101 15 4 chr12 16936425 16936890 -126849565 - L1PA11 LINE L1 0 6174 5705 747 246 33 6 chr12 16937776 16937959 -126848496 - MER5A DNA MER1_type -1 188 1 295 283 72 36 chr12 16988327 16988465 -126797990 - L1ME3 LINE L1 -2 6160 6018 1322 197 122 3 chr12 16988487 16988782 -126797673 + MER7A DNA MER2_type 19 346 0 356 266 48 0 chr12 16988836 16988861 -126797594 - L1MA9 LINE L1 -17 6295 6271 1434 225 92 30 chr12 16988861 16989385 -126797070 - L1ME1 LINE L1 -43 6123 5568 12130 42 2 4 chr12 16989388 16993095 -126793360 - L1PA5 LINE L1 0 6154 2353 297 191 131 12 chr12 16993251 16993335 -126793120 - MER5C DNA MER1_type -202 122 29 485 267 61 6 chr12 16993807 16993972 -126792483 - MER112 DNA MER1_type -84 176 3 187 313 62 12 chr12 16993990 16994070 -126792385 + L2 LINE L2 3189 3272 0 21 57 0 0 chr12 16994128 16994163 -126792292 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 16995042 16995063 -126791392 + AT_rich Low_complexity Low_complexity 1 21 0 390 356 75 0 chr12 16995118 16995264 -126791191 + MER5B DNA MER1_type 17 173 -5 3034 240 60 20 chr12 16995790 16996825 -126789630 + MER69 DNA AcHobo 1451 2526 0 926 201 11 32 chr12 16996974 16997163 -126789292 - MER5A DNA MER1_type -2 187 3 332 307 73 20 chr12 16997176 16997326 -126789129 + L2 LINE L2 1519 1676 -1638 1921 272 152 36 chr12 16997335 16998579 -126787876 + L2 LINE L2 1917 3313 0 2823 10 0 0 chr12 16999325 16999634 -126786821 - AluYa5 SINE Alu -2 309 1 200 214 18 0 chr12 16999702 16999758 -126786697 + (CATA)n Simple_repeat Simple_repeat 4 60 0 369 241 9 18 chr12 16999843 16999955 -126786500 - MER102a DNA MER1_type -6 324 214 392 254 50 86 chr12 17000052 17000272 -126786183 - MER102a DNA MER1_type -117 213 2 212 213 0 82 chr12 17000287 17000348 -126786107 - L2 LINE L2 -695 2619 2564 948 259 41 4 chr12 17000898 17001141 -126785314 + MIR SINE MIR 8 259 -3 500 337 49 0 chr12 17001165 17001328 -126785127 + MIR SINE MIR 6 176 -86 672 163 62 31 chr12 17001570 17001699 -126784756 + FLAM_C SINE Alu 1 133 0 205 95 24 24 chr12 17001699 17001741 -126784714 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 256 227 62 86 chr12 17003439 17003567 -126782888 - MIR SINE MIR -108 154 30 285 75 0 0 chr12 17003736 17003776 -126782679 + (CA)n Simple_repeat Simple_repeat 1 40 0 205 293 114 29 chr12 17006602 17006742 -126779713 + L2 LINE L2 3162 3313 0 2406 130 0 16 chr12 17007580 17007950 -126778505 - THE1B LTR MaLR 0 364 1 1193 269 102 26 chr12 17008171 17008858 -126777597 - L2 LINE L2 -5 3308 2575 2433 209 22 0 chr12 17008867 17008902 -126777553 - MLT2B2 LTR ERVL -15 500 467 450 0 0 0 chr12 17008902 17008952 -126777503 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2433 209 22 0 chr12 17008952 17009405 -126777050 - MLT2B2 LTR ERVL -48 467 1 296 273 206 26 chr12 17009405 17009599 -126776856 - L2 LINE L2 -736 2578 2350 348 322 63 14 chr12 17009717 17010083 -126776372 + L1MEc LINE L1 1763 2104 -4436 330 360 80 26 chr12 17010084 17010348 -126776107 + L1MEc LINE L1 2183 2460 -4261 591 78 0 0 chr12 17010480 17010570 -126775885 + L1PA15 LINE L1 6071 6160 -5 1214 185 60 47 chr12 17012299 17012618 -126773837 - MER33 DNA MER1_type -1 323 1 361 204 80 0 chr12 17012795 17012883 -126773572 - MIR SINE MIR -56 206 112 225 94 0 0 chr12 17013890 17013922 -126772533 + (TTCTCC)n Simple_repeat Simple_repeat 5 36 0 333 0 0 0 chr12 17015353 17015390 -126771065 + (CA)n Simple_repeat Simple_repeat 2 38 0 342 0 0 0 chr12 17016323 17016361 -126770094 + (TG)n Simple_repeat Simple_repeat 2 39 0 446 275 66 75 chr12 17016416 17016750 -126769705 + MLT1I LTR MaLR 79 409 0 215 286 160 42 chr12 17017809 17017928 -126768527 - L2 LINE L2 -5 3308 3176 6703 55 24 5 chr12 17018186 17019093 -126767362 + L1PA7 LINE L1 5228 6151 -3 27 49 0 0 chr12 17019815 17019856 -126766599 + AT_rich Low_complexity Low_complexity 1 41 0 186 43 0 0 chr12 17020509 17020532 -126765923 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 244 390 96 14 chr12 17020688 17021313 -126765142 - L2 LINE L2 -147 3125 2451 865 308 28 4 chr12 17021498 17021751 -126764704 + MIR SINE MIR 4 262 0 383 221 53 11 chr12 17021758 17021853 -126764602 - MIR SINE MIR -57 205 107 310 256 0 45 chr12 17021994 17022127 -126764328 + G-rich Low_complexity Low_complexity 6 132 0 762 159 0 14 chr12 17022631 17022769 -126763686 - FLAM_C SINE Alu -2 141 6 831 301 51 58 chr12 17022967 17023362 -126763093 - L2 LINE L2 -1 3312 2921 691 233 89 41 chr12 17023911 17024203 -126762252 + MLT1J LTR MaLR 6 311 -200 2141 117 0 3 chr12 17024491 17024790 -126761665 - AluSc SINE Alu -11 298 1 225 277 68 68 chr12 17024836 17025320 -126761135 + L1MEc LINE L1 1838 2321 -4075 947 244 87 8 chr12 17025396 17025706 -126760749 + L1MEc LINE L1 2597 2942 -3273 1449 239 0 17 chr12 17025706 17026007 -126760448 - AluJo SINE Alu -16 296 1 947 244 87 8 chr12 17026007 17026065 -126760390 + L1MEc LINE L1 2942 2994 -3221 283 300 65 100 chr12 17026200 17026393 -126760062 + L2 LINE L2 3030 3213 -100 1752 127 0 12 chr12 17026393 17026645 -126759810 - AluSx SINE Alu 0 312 64 283 300 65 100 chr12 17026645 17026711 -126759744 + L2 LINE L2 3213 3280 -33 198 195 44 9 chr12 17026755 17026868 -126759587 + (TA)n Simple_repeat Simple_repeat 1 117 0 308 235 0 0 chr12 17026873 17026941 -126759514 - L1MC4 LINE L1 -1339 6703 6636 802 127 0 8 chr12 17026986 17027104 -126759351 + FLAM_C SINE Alu 5 121 -22 48 32 0 0 chr12 17027105 17027167 -126759288 + AT_rich Low_complexity Low_complexity 1 62 0 1810 157 20 10 chr12 17028065 17028358 -126758097 + AluJo SINE Alu 1 296 -16 1657 147 48 20 chr12 17028578 17028750 -126757705 - AluJo SINE Alu -11 301 116 180 0 0 0 chr12 17028750 17028770 -126757685 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1657 147 48 20 chr12 17028770 17028890 -126757565 - AluJo SINE Alu -196 116 1 23 0 0 0 chr12 17029243 17029266 -126757189 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr12 17030247 17030267 -126756188 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 362 349 33 13 chr12 17030556 17030708 -126755747 - MIR SINE MIR -95 167 13 585 298 56 60 chr12 17031837 17032272 -126754183 + L2 LINE L2 2761 3192 -121 183 42 0 0 chr12 17033219 17033243 -126753212 + (CA)n Simple_repeat Simple_repeat 1 24 0 2290 96 0 3 chr12 17034460 17034763 -126751692 + AluSg1 SINE Alu 1 302 -7 425 303 19 49 chr12 17035398 17035560 -126750895 + MIR3 SINE MIR 42 198 -10 338 232 119 81 chr12 17036376 17036561 -126749894 + Charlie8 DNA MER1_type 3 194 -2223 612 230 7 35 chr12 17036880 17037075 -126749380 - MLT1F LTR MaLR -11 531 370 457 279 35 23 chr12 17037212 17037384 -126749071 - MLT1F LTR MaLR -421 174 1 255 312 42 3 chr12 17037970 17038112 -126748343 - MIR3 SINE MIR -63 145 15 189 0 0 0 chr12 17038200 17038221 -126748234 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 541 295 120 13 chr12 17038946 17039180 -126747275 - MIR SINE MIR -2 260 2 401 0 20 0 chr12 17039901 17039950 -126746505 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 23 0 0 0 chr12 17040330 17040353 -126746102 + AT_rich Low_complexity Low_complexity 1 23 0 238 300 43 0 chr12 17042538 17042608 -126743847 + L2 LINE L2 3199 3271 -1 23 0 0 0 chr12 17042635 17042658 -126743797 + AT_rich Low_complexity Low_complexity 1 23 0 418 319 71 45 chr12 17042899 17043327 -126743128 + L1MEc LINE L1 36 733 -5663 947 285 83 46 chr12 17043366 17043736 -126742719 + L1MEc LINE L1 806 1161 -5235 306 0 0 0 chr12 17043736 17043770 -126742685 + (CA)n Simple_repeat Simple_repeat 1 34 0 947 285 83 46 chr12 17043770 17044100 -126742355 + L1MEc LINE L1 1161 1477 -4919 2258 71 0 10 chr12 17044100 17044396 -126742059 + AluY SINE Alu 1 293 -18 947 285 83 46 chr12 17044396 17044673 -126741782 + L1MEc LINE L1 1477 1820 -4576 435 321 8 0 chr12 17045239 17045373 -126741082 - MIR SINE MIR -25 237 103 279 354 102 16 chr12 17045551 17045718 -126740737 - MIR SINE MIR -62 146 6 22 35 0 0 chr12 17045762 17045791 -126740664 + AT_rich Low_complexity Low_complexity 1 29 0 640 221 0 8 chr12 17046420 17046542 -126739913 + FLAM_A SINE Alu 1 121 -12 780 116 75 7 chr12 17047540 17047686 -126738769 + THE1C LTR MaLR 200 355 -20 2606 48 0 0 chr12 17047905 17048216 -126738239 - AluY SINE Alu 0 311 1 782 130 0 30 chr12 17049899 17050030 -126736425 + FLAM_C SINE Alu 3 129 -4 250 329 162 45 chr12 17050050 17050494 -126735961 + L2 LINE L2 691 1186 -2128 798 164 14 14 chr12 17050598 17050744 -126735711 - THE1C LTR MaLR -229 146 1 21 36 0 0 chr12 17051386 17051414 -126735041 + AT_rich Low_complexity Low_complexity 1 28 0 513 247 27 70 chr12 17051600 17051786 -126734669 + MER5B DNA MER1_type 1 178 0 360 259 191 8 chr12 17051794 17051925 -126734530 - MER5A DNA MER1_type 0 189 35 702 198 70 0 chr12 17051927 17052084 -126734371 - MER105 DNA DNA -36 168 1 329 333 117 46 chr12 17052241 17052739 -126733716 + L2 LINE L2 1792 2324 -990 2046 114 0 7 chr12 17053488 17053787 -126732668 + L1P4 LINE L1 5394 5690 -471 6595 173 3 6 chr12 17053908 17055028 -126731427 - MSTA-int LTR MaLR -535 1116 1 2143 192 31 2 chr12 17055028 17055444 -126731011 - MSTA LTR MaLR 0 428 1 5470 171 46 2 chr12 17055445 17055580 -126730875 + L1PA4 LINE L1 4882 5010 -1145 2079 111 10 16 chr12 17055580 17055886 -126730569 + AluSq SINE Alu 1 304 -9 5470 171 46 2 chr12 17055886 17056998 -126729457 + L1PA4 LINE L1 5010 6155 0 25 31 0 0 chr12 17056998 17057030 -126729425 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr12 17057230 17057256 -126729199 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr12 17058051 17058075 -126728380 + AT_rich Low_complexity Low_complexity 1 24 0 2098 152 0 0 chr12 17058390 17058700 -126727755 - AluSx SINE Alu -2 310 1 304 376 32 0 chr12 17058941 17059066 -126727389 + MER5B DNA MER1_type 2 130 -48 2292 154 63 49 chr12 17059070 17059596 -126726859 - L1MB3 LINE L1 0 6183 5651 467 399 7 13 chr12 17059734 17060042 -126726413 + HERV16 LTR ERVL 1271 1576 -3420 18752 53 0 6 chr12 17060186 17062528 -126723927 - L1P LINE L1 -3816 2330 1 184 184 20 41 chr12 17062892 17062941 -126723514 - L2 LINE L2 0 3313 3266 16520 42 6 2 chr12 17063190 17065289 -126721166 + L1P LINE L1 2913 5020 -1126 31 0 0 0 chr12 17066452 17066483 -126719972 + AT_rich Low_complexity Low_complexity 1 31 0 188 184 0 0 chr12 17067468 17067506 -126718949 - L2 LINE L2 -14 3299 3262 6744 60 4 8 chr12 17068591 17069578 -126716877 - L1PA8 LINE L1 -4 6168 5167 26 0 0 0 chr12 17072201 17072227 -126714228 + AT_rich Low_complexity Low_complexity 1 26 0 868 190 145 5 chr12 17073303 17073503 -126712952 - MER34 LTR ERV1 0 542 315 373 256 73 80 chr12 17074347 17074484 -126711971 - L2 LINE L2 0 3272 3137 1145 266 41 4 chr12 17074746 17075231 -126711224 + L1M4 LINE L1 4077 4579 -1567 300 150 0 0 chr12 17075286 17075326 -126711129 + (T)n Simple_repeat Simple_repeat 1 40 0 340 318 101 11 chr12 17075441 17075620 -126710835 - L2 LINE L2 -723 2591 2397 218 263 38 25 chr12 17075630 17075710 -126710745 + MIR SINE MIR 170 250 -12 480 171 9 0 chr12 17078620 17078725 -126707730 - L1MA8 LINE L1 0 6291 6186 721 280 51 16 chr12 17079696 17079953 -126706502 + MLT1F1 LTR MaLR 2 267 -300 1095 135 48 70 chr12 17080352 17080582 -126705873 + AluJo SINE Alu 87 311 -1 28 48 0 0 chr12 17080615 17080657 -126705798 + AT_rich Low_complexity Low_complexity 1 42 0 7293 41 19 11 chr12 17080798 17081807 -126704648 - L1PA5 LINE L1 -5 6149 5139 37 23 0 0 chr12 17081932 17081976 -126704479 + AT_rich Low_complexity Low_complexity 1 44 0 337 275 64 7 chr12 17082003 17082747 -126703708 + L1ME LINE L1 3026 3986 -2160 720 241 25 46 chr12 17082749 17083031 -126703424 + L1ME LINE L1 5255 5530 -634 25 0 0 0 chr12 17083152 17083177 -126703278 + AT_rich Low_complexity Low_complexity 1 25 0 1232 146 15 0 chr12 17083201 17083406 -126703049 - MER2 DNA MER2_type -136 209 2 497 178 9 9 chr12 17083406 17083507 -126702948 + MER53 DNA DNA 88 188 -1 295 269 28 99 chr12 17083516 17083657 -126702798 + MIR SINE MIR 102 232 -30 1526 203 12 34 chr12 17084773 17085063 -126701392 + MST-int LTR MaLR 1327 1611 -40 4007 138 13 5 chr12 17085063 17085693 -126700762 - MER41B LTR ERV1 0 635 1 1526 203 12 34 chr12 17085693 17085728 -126700727 + MST-int LTR MaLR 1611 1645 -6 369 276 63 8 chr12 17087050 17087177 -126699278 + MIR SINE MIR 84 217 -45 451 307 63 29 chr12 17087927 17088132 -126698323 + LTR33 LTR ERVL 305 516 -5 908 292 101 32 chr12 17088627 17089035 -126697420 + MLT1J2 LTR MaLR 1 436 -14 420 292 46 60 chr12 17089053 17089334 -126697121 - MLT1K LTR MaLR -3 585 309 683 253 150 55 chr12 17090120 17090614 -126695841 - MLT1G LTR MaLR -2 588 48 642 96 10 0 chr12 17090836 17090940 -126695515 + HSMAR2 DNA Mariner 1197 1301 -1 207 0 0 0 chr12 17091044 17091067 -126695388 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 258 296 25 0 chr12 17092078 17092159 -126694296 - MIR3 SINE MIR -13 195 113 244 301 151 0 chr12 17092558 17092651 -126693804 - L2 LINE L2 0 3313 3207 248 226 66 38 chr12 17092719 17092825 -126693630 - L1M4 LINE L1 -937 5209 5101 490 204 9 0 chr12 17092838 17092946 -126693509 + L1M LINE L1 5315 5423 -741 405 274 9 19 chr12 17093054 17093269 -126693186 + L1MEc LINE L1 2172 2384 -4012 336 205 116 54 chr12 17094314 17094426 -126692029 + MIR SINE MIR 144 262 0 451 267 121 56 chr12 17094554 17094786 -126691669 - LTR16C LTR ERVL -244 247 1 305 272 59 88 chr12 17094859 17094995 -126691460 + L2 LINE L2 3178 3309 -4 213 94 0 0 chr12 17097183 17097215 -126689240 + (GA)n Simple_repeat Simple_repeat 2 33 0 229 309 37 98 chr12 17097979 17098355 -126688100 - L2 LINE L2 -76 3237 2885 229 323 21 10 chr12 17098732 17098828 -126687627 - L2 LINE L2 -496 2818 2722 310 259 19 19 chr12 17099185 17099293 -126687162 + MLT1J2-int LTR MaLR 5 112 -1623 * 467 318 42 8 chr12 17099285 17099521 -126686934 + MLT1J2-int LTR MaLR 285 528 -843 1702 293 59 20 chr12 17099696 17100601 -126685854 - L1M4 LINE L1 -2105 4041 3102 2102 282 68 40 chr12 17100737 17102040 -126684415 - L1MEc LINE L1 -5020 1376 37 521 321 176 28 chr12 17102056 17102524 -126683931 + L2 LINE L2 2772 3313 0 1461 197 154 6 chr12 17102551 17102896 -126683559 + MSTD LTR MaLR 1 396 0 4175 226 39 48 chr12 17102898 17104014 -126682441 + MSTD-int LTR MaLR 2 1108 -627 798 292 54 21 chr12 17104183 17104515 -126681940 + HERV16 LTR ERVL 2200 2542 -2454 2137 121 3 3 chr12 17104520 17104818 -126681637 - AluSx SINE Alu -11 301 4 4210 47 0 4 chr12 17104838 17105367 -126681088 - L1PA4 LINE L1 0 6155 5629 4688 211 62 43 chr12 17106122 17106292 -126680163 - L1M4 LINE L1 -506 5678 5513 2542 119 6 3 chr12 17106292 17106653 -126679802 + THE1B LTR MaLR 3 364 0 4688 211 62 43 chr12 17106653 17107204 -126679251 - L1M4 LINE L1 -671 5513 4974 2240 114 0 7 chr12 17107204 17107503 -126678952 + AluSc SINE Alu 1 297 -12 4688 211 62 43 chr12 17107503 17107993 -126678462 - L1M4 LINE L1 -1210 4974 4494 1853 156 57 79 chr12 17107993 17108435 -126678020 - MSTB1 LTR MaLR 0 432 1 4688 211 62 43 chr12 17108435 17109064 -126677391 - L1M4 LINE L1 -1690 4494 3807 25 0 0 0 chr12 17109792 17109817 -126676638 + AT_rich Low_complexity Low_complexity 1 25 0 242 238 111 0 chr12 17109984 17110047 -126676408 - HAL1 LINE L1 -866 1641 1572 469 368 21 51 chr12 17110213 17110642 -126675813 - LTR16C LTR ERVL -4 487 72 21 0 0 0 chr12 17110986 17111007 -126675448 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 17111048 17111072 -126675383 + AT_rich Low_complexity Low_complexity 1 24 0 366 299 175 16 chr12 17111193 17111387 -126675068 - L1MEd LINE L1 -5208 911 687 468 86 0 0 chr12 17111421 17111491 -126674964 + (GA)n Simple_repeat Simple_repeat 1 70 0 338 363 87 45 chr12 17111495 17111850 -126674605 - L1MEd LINE L1 -5479 640 271 1031 57 0 0 chr12 17111927 17112049 -126674406 - AluSq/x SINE Alu -180 133 12 249 98 0 0 chr12 17112121 17112162 -126674293 + (TG)n Simple_repeat Simple_repeat 2 42 0 256 311 0 0 chr12 17117164 17117225 -126669230 - MIR SINE MIR -155 107 47 903 287 94 38 chr12 17118124 17118625 -126667830 + MLT1H LTR MaLR 21 549 0 280 348 37 34 chr12 17118753 17118949 -126667506 + MLT1H-int LTR MaLR 309 508 -863 2201 114 56 14 chr12 17118949 17119307 -126667148 - THE1C LTR MaLR 0 375 3 280 348 37 34 chr12 17119307 17119406 -126667049 + MLT1H-int LTR MaLR 508 605 -766 745 199 131 38 chr12 17120351 17120804 -126665651 + MLT1H LTR MaLR 1 548 -1 584 256 68 11 chr12 17121394 17121585 -126664870 - MER46C DNA MER2_type 0 338 137 382 276 141 56 chr12 17122402 17122552 -126663903 + L2 LINE L2 2943 3079 -193 195 42 0 0 chr12 17122552 17122576 -126663879 + (CA)n Simple_repeat Simple_repeat 1 24 0 382 276 141 56 chr12 17122576 17122729 -126663726 + L2 LINE L2 3079 3272 0 300 154 22 22 chr12 17123852 17123943 -126662512 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 220 236 18 0 chr12 17123965 17124020 -126662435 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 237 280 64 13 chr12 17124881 17125038 -126661417 - L1ME4a LINE L1 -11 6110 5946 21 57 0 0 chr12 17125038 17125073 -126661382 + AT_rich Low_complexity Low_complexity 1 35 0 727 118 0 0 chr12 17125783 17125893 -126660562 - AluY SINE Alu -201 110 1 254 302 54 40 chr12 17126658 17126807 -126659648 + L2 LINE L2 2670 2820 -494 672 259 81 10 chr12 17127642 17127839 -126658616 + MIR SINE MIR 8 218 -44 6287 139 13 4 chr12 17128003 17129007 -126657448 + HSMAR2 DNA Mariner 166 1178 -124 1473 253 78 45 chr12 17129114 17129967 -126656488 - L1MEc LINE L1 -3418 2797 1930 537 16 0 0 chr12 17129967 17130029 -126656426 + (TG)n Simple_repeat Simple_repeat 1 62 0 1473 253 78 45 chr12 17130029 17130398 -126656057 - L1MEc LINE L1 -4285 1930 1575 190 221 130 26 chr12 17131002 17131079 -126655376 + MIR3 SINE MIR 117 201 -7 254 277 76 8 chr12 17131581 17131700 -126654755 - LTR33A LTR ERVL -24 499 373 241 179 75 60 chr12 17131965 17132032 -126654423 - LTR33A LTR ERVL -401 122 55 2459 76 0 13 chr12 17132523 17132837 -126653618 + AluY SINE Alu 1 310 -1 22 70 0 0 chr12 17132879 17132922 -126653533 + AT_rich Low_complexity Low_complexity 1 43 0 543 305 18 24 chr12 17133989 17134153 -126652302 + MIR SINE MIR 12 174 -88 720 241 80 16 chr12 17134156 17134405 -126652050 + Charlie4a DNA MER1_type 244 508 0 259 319 82 7 chr12 17134411 17134546 -126651909 + MLT1J LTR MaLR 326 470 -41 336 289 67 62 chr12 17134588 17134955 -126651500 - HAL1b LINE L1 -780 1550 1186 2113 140 42 22 chr12 17134955 17135312 -126651143 + THE1B LTR MaLR 1 364 0 336 289 67 62 chr12 17135312 17135417 -126651038 - HAL1b LINE L1 -1144 1186 89 983 283 56 24 chr12 17135620 17136211 -126650244 + L1MCa LINE L1 961 1570 -4856 2519 14 4 0 chr12 17136321 17136637 -126649818 - AluY SINE Alu 0 317 1 1563 116 9 17 chr12 17136639 17136871 -126649584 - AluSp SINE Alu -15 298 69 2264 238 67 7 chr12 17137107 17137686 -126648769 + MSTD-int LTR MaLR 1116 1729 -6 1417 211 69 61 chr12 17137691 17138084 -126648371 + MSTD LTR MaLR 1 396 0 690 236 40 25 chr12 17138092 17138291 -126648164 - L1ME2 LINE L1 -106 6058 5857 227 102 0 0 chr12 17138952 17139001 -126647454 - LTR66 LTR ERVL -167 443 395 318 50 0 0 chr12 17139002 17139042 -126647413 + (CA)n Simple_repeat Simple_repeat 2 41 0 203 139 23 23 chr12 17139043 17139086 -126647369 + (TA)n Simple_repeat Simple_repeat 2 44 0 419 289 113 50 chr12 17139235 17139616 -126646839 + MLT1E LTR MaLR 42 494 -101 911 283 140 28 chr12 17139760 17140273 -126646182 - L1ME2 LINE L1 -975 5171 4554 252 0 0 0 chr12 17140273 17140301 -126646154 + (CA)n Simple_repeat Simple_repeat 1 28 0 911 283 140 28 chr12 17140301 17140501 -126645954 - L1ME2 LINE L1 -1592 4554 4378 21 71 0 0 chr12 17140621 17140663 -126645792 + AT_rich Low_complexity Low_complexity 1 42 0 228 288 0 17 chr12 17140685 17140744 -126645711 - L1ME2 LINE L1 -2037 4109 4052 287 313 129 18 chr12 17141565 17141728 -126644727 - MIR SINE MIR -8 254 74 269 252 154 16 chr12 17242522 17242645 -126543810 - MIR SINE MIR -6 256 117 440 294 19 47 chr12 17242878 17242935 -126543520 - L2 LINE L2 0 3313 3256 777 213 34 34 chr12 17242935 17243142 -126543313 + MER3 DNA MER1_type 3 209 0 440 294 19 47 chr12 17243142 17243239 -126543216 - L2 LINE L2 -57 3256 3164 1720 107 0 0 chr12 17243239 17243463 -126542992 + AluSq SINE Alu 1 224 -89 440 294 19 47 chr12 17243463 17243518 -126542937 - L2 LINE L2 -149 3164 3109 1856 159 3 7 chr12 17243906 17244208 -126542247 + AluSg SINE Alu 1 301 -9 815 266 86 4 chr12 17245227 17245460 -126540995 - MIR SINE MIR -10 252 1 2327 110 0 0 chr12 17246900 17247209 -126539246 + AluSc SINE Alu 1 309 0 249 370 82 65 chr12 17247270 17247624 -126538831 - L2 LINE L2 -73 3199 2840 828 155 101 5 chr12 17247762 17247969 -126538486 + L1MC3 LINE L1 7553 7779 -6 230 280 0 32 chr12 17248865 17248958 -126537497 + L1ME4a LINE L1 5967 6056 -65 208 171 24 0 chr12 17250739 17250780 -126535675 + (CGAG)n Simple_repeat Simple_repeat 1 42 0 215 380 102 0 chr12 17251744 17251852 -126534603 - L3 LINE CR1 -15 1562 1444 253 256 163 23 chr12 17251880 17252009 -126534446 - MIR SINE MIR -4 258 112 2139 122 0 3 chr12 17253486 17253781 -126532674 + AluSx SINE Alu 3 296 -16 380 336 30 8 chr12 17253960 17254094 -126532361 - L2 LINE L2 -3 3310 3174 2553 68 0 0 chr12 17254575 17254886 -126531569 + AluY SINE Alu 1 311 0 249 284 0 0 chr12 17255129 17255203 -126531252 + (TAA)n Simple_repeat Simple_repeat 3 76 0 1151 239 20 0 chr12 17256083 17256330 -126530125 - MIR SINE MIR 0 262 11 22 0 0 0 chr12 17256404 17256426 -126530029 + AT_rich Low_complexity Low_complexity 1 22 0 231 264 64 9 chr12 17256567 17256677 -126529778 + L1MC5 LINE L1 7014 7129 -832 400 319 57 7 chr12 17257296 17257437 -126529018 + L2 LINE L2 3117 3264 -8 618 318 59 13 chr12 17257675 17257914 -126528541 - MIR SINE MIR 0 262 13 2234 222 30 8 chr12 17257933 17258388 -126528067 + MLT2B2 LTR ERVL 1 470 -45 233 56 0 28 chr12 17258388 17258424 -126528031 + (TCCA)n Simple_repeat Simple_repeat 4 38 0 2234 222 30 8 chr12 17258424 17258472 -126527983 + MLT2B2 LTR ERVL 470 515 0 2130 97 4 0 chr12 17258889 17259167 -126527288 + AluSg SINE Alu 1 279 -31 355 19 19 19 chr12 17259172 17259225 -126527230 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 389 280 74 51 chr12 17259302 17259477 -126526978 + MIR SINE MIR 23 201 -61 716 288 88 0 chr12 17259713 17259918 -126526537 + MER45C DNA AcHobo 1 223 -730 430 281 110 0 chr12 17259955 17260101 -126526354 + MER45C DNA AcHobo 421 582 -371 2438 79 0 0 chr12 17260576 17260879 -126525576 - AluSg SINE Alu -7 303 1 216 298 0 0 chr12 17261641 17261688 -126524767 + L2 LINE L2 3214 3260 -12 731 133 7 84 chr12 17262985 17263128 -126523327 - FLAM_C SINE Alu 0 133 2 2022 142 39 31 chr12 17263530 17263889 -126522566 - THE1B LTR MaLR -2 362 1 368 277 46 0 chr12 17264350 17264480 -126521975 - L1M4 LINE L1 -3298 2848 2713 415 302 89 34 chr12 17264772 17265007 -126521448 - MIR SINE MIR -2 260 13 2143 123 3 0 chr12 17265929 17266221 -126520234 - AluSx SINE Alu -19 293 1 225 303 142 19 chr12 17266999 17267161 -126519294 - MIR SINE MIR 0 262 81 1189 146 75 66 chr12 17267725 17268087 -126518368 - THE1C LTR MaLR 0 375 11 2155 130 12 18 chr12 17268913 17269252 -126517203 - MER1B DNA MER1_type 0 337 1 1542 178 58 4 chr12 17270032 17270185 -126516270 - AluJo SINE Alu -22 290 147 450 0 0 0 chr12 17270185 17270235 -126516220 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1542 178 58 4 chr12 17270235 17270356 -126516099 - AluJo SINE Alu -165 147 1 23 0 0 0 chr12 17270990 17271013 -126515442 + AT_rich Low_complexity Low_complexity 1 23 0 542 278 81 6 chr12 17271580 17271753 -126514702 + MIR SINE MIR 40 225 -37 1244 105 12 0 chr12 17272537 17272709 -126513746 - AluSq SINE Alu -14 299 126 1294 188 35 60 chr12 17272709 17273023 -126513432 - AluJb SINE Alu -6 306 1 425 220 6 143 chr12 17273049 17273115 -126513340 - MLT1B LTR MaLR -3 592 561 4302 119 5 1 chr12 17273115 17273763 -126512692 + L1PA13 LINE L1 5496 6145 -18 425 220 6 143 chr12 17273763 17273864 -126512591 - MLT1B LTR MaLR -34 561 448 632 250 23 17 chr12 17273911 17274101 -126512354 - MLT1B LTR MaLR -11 379 174 731 291 25 18 chr12 17274145 17274402 -126512053 - MLT1G1 LTR MaLR -285 310 7 1823 41 9 5 chr12 17274699 17274920 -126511535 - AluY SINE Alu -89 222 1 262 243 95 27 chr12 17276795 17276869 -126509586 + L2 LINE L2 3188 3266 -6 * 434 236 62 67 chr12 17276864 17277059 -126509396 - MIR SINE MIR -3 259 66 2895 168 21 25 chr12 17278733 17279157 -126507298 + L1M3f LINE L1 1292 1715 -4850 2381 82 0 35 chr12 17279157 17279473 -126506982 + AluY SINE Alu 1 305 -6 2895 168 21 25 chr12 17279473 17279615 -126506840 + L1M3f LINE L1 1715 1856 -4709 483 175 0 0 chr12 17279603 17279727 -126506728 + L1M3f LINE L1 2401 2500 -4065 * 2159 211 39 16 chr12 17279748 17280307 -126506148 + L1M3f LINE L1 3826 4397 -3168 574 238 0 0 chr12 17280412 17280555 -126505900 - L1 LINE L1 -3286 2860 2718 28 0 0 0 chr12 17281056 17281084 -126505371 + AT_rich Low_complexity Low_complexity 1 28 0 597 275 62 56 chr12 17281120 17281494 -126504961 - L1MC4 LINE L1 -42 8000 7625 635 161 153 0 chr12 17281519 17281656 -126504799 - MER3 DNA MER1_type -2 207 50 396 210 57 0 chr12 17281681 17281805 -126504650 - L1MC4 LINE L1 -431 7611 7481 770 249 231 48 chr12 17281805 17282303 -126504152 + MLT1G1 LTR MaLR 1 589 -6 329 284 82 18 chr12 17282309 17282445 -126504010 - L1MC4a LINE L1 -421 7387 7313 2288 113 0 3 chr12 17282445 17282755 -126503700 - AluSc SINE Alu 0 309 1 329 284 82 18 chr12 17282755 17282801 -126503654 - L1MC4a LINE L1 -495 7313 7271 191 284 63 21 chr12 17283350 17283445 -126503010 + L2 LINE L2 2843 2941 -372 2359 94 0 0 chr12 17283525 17283823 -126502632 - AluY SINE Alu -13 298 1 21 0 0 0 chr12 17283830 17283851 -126502604 + AT_rich Low_complexity Low_complexity 1 21 0 1817 147 0 29 chr12 17284432 17284745 -126501710 - AluJb SINE Alu -8 304 1 3394 136 2 19 chr12 17284870 17285406 -126501049 - MER1A DNA MER1_type 0 527 1 238 160 320 0 chr12 17285427 17285502 -126500953 + MIR SINE MIR 32 130 -78 345 125 0 0 chr12 17285518 17285574 -126500881 + (CA)n Simple_repeat Simple_repeat 2 57 0 2338 125 97 5 chr12 17287470 17287862 -126498593 + MSTA LTR MaLR 1 428 0 305 283 43 65 chr12 17288038 17288176 -126498279 - L2 LINE L2 0 3272 3138 1420 120 19 5 chr12 17288194 17288403 -126498052 + AluSq SINE Alu 1 212 -101 26 30 0 0 chr12 17288608 17288641 -126497814 + AT_rich Low_complexity Low_complexity 1 33 0 1885 124 44 0 chr12 17288644 17288918 -126497537 - AluSx SINE Alu -26 286 1 1976 173 18 12 chr12 17289358 17289693 -126496762 - MER1B DNA MER1_type 0 337 1 2348 96 0 0 chr12 17289825 17290126 -126496329 + AluSc SINE Alu 1 301 -8 1421 223 63 18 chr12 17291158 17291557 -126494898 - LTR40c LTR ERVL -6 459 43 458 230 239 10 chr12 17292732 17292941 -126493514 + MER46C DNA MER2_type 81 337 -1 2042 131 0 0 chr12 17293006 17293468 -126492987 + AluSx SINE Alu 1 462 0 2221 118 0 3 chr12 17294777 17295117 -126491338 - AluSp SINE Alu 0 313 1 963 174 6 0 chr12 17295117 17295278 -126491177 - FRAM SINE Alu -13 163 2 817 264 32 0 chr12 17295300 17295511 -126490944 - MIR SINE MIR -34 228 13 245 306 121 12 chr12 17295546 17295719 -126490736 - L2 LINE L2 -1430 1884 1693 235 263 118 0 chr12 17295770 17295846 -126490609 + MIR3 SINE MIR 123 207 -1 1993 122 4 0 chr12 17297522 17297829 -126488626 + AluSx SINE Alu 2 309 0 1990 117 10 3 chr12 17297938 17298228 -126488227 + AluSx SINE Alu 1 292 -20 199 268 113 10 chr12 17298389 17298486 -126487969 + MIR SINE MIR 156 262 0 224 248 28 138 chr12 17298624 17298769 -126487686 + L2 LINE L2 3180 3308 -5 12284 45 3 2 chr12 17298889 17300503 -126485952 - L1P LINE L1 -851 5295 3680 5631 46 1 1 chr12 17300502 17301221 -126485234 + L1PA5 LINE L1 5416 6134 -20 * 231 370 60 20 chr12 17303325 17303525 -126482930 + L2 LINE L2 1998 2205 -1109 374 294 32 32 chr12 17303865 17303934 -126482521 + L1ME4a LINE L1 5477 5545 -576 1387 206 74 31 chr12 17303934 17304284 -126482171 + MLT1A1 LTR MaLR 1 365 0 374 294 32 32 chr12 17304284 17304435 -126482020 + L1ME4a LINE L1 5544 5697 -424 1316 70 150 0 chr12 17304569 17304769 -126481686 - MER30 DNA MER1_type 0 230 1 276 245 129 20 chr12 17304893 17305040 -126481415 + L1ME4a LINE L1 5954 6116 -5 34 0 0 0 chr12 17305040 17305074 -126481381 + AT_rich Low_complexity Low_complexity 1 34 0 890 169 20 10 chr12 17306589 17306602 -126479853 + L1 LINE L1 3249 3260 -2886 2258 100 3 3 chr12 17306602 17306911 -126479544 + AluSc SINE Alu 1 309 0 890 169 20 10 chr12 17306911 17307098 -126479357 + L1 LINE L1 3260 3451 -2695 3529 102 7 19 chr12 17307468 17308010 -126478445 - MER41B LTR ERV1 -99 536 1 847 268 191 14 chr12 17308010 17308454 -126478001 + L2 LINE L2 2757 3301 -12 266 347 61 0 chr12 17310469 17310567 -126475888 + L2 LINE L2 3204 3307 -6 21 36 0 0 chr12 17310819 17310847 -126475608 + AT_rich Low_complexity Low_complexity 1 28 0 306 194 45 0 chr12 17311652 17311719 -126474736 - L1MCa LINE L1 -4361 2065 1996 347 338 171 0 chr12 17312489 17312705 -126473750 + MIR SINE MIR 2 254 -8 652 221 16 0 chr12 17312803 17312925 -126473530 - FLAM_A SINE Alu -9 124 1 272 305 57 9 chr12 17313078 17313183 -126473272 + L2 LINE L2 2708 2817 -497 22 35 0 0 chr12 17315042 17315071 -126471384 + AT_rich Low_complexity Low_complexity 1 29 0 306 293 25 64 chr12 17315660 17315817 -126470638 + L1MEc LINE L1 1569 1719 -5002 434 292 116 20 chr12 17315862 17316259 -126470196 + L1MEc LINE L1 1666 2100 -4440 23 0 0 0 chr12 17316276 17316299 -126470156 + AT_rich Low_complexity Low_complexity 1 23 0 326 292 200 0 chr12 17316481 17316611 -126469844 - MIR SINE MIR -103 159 4 228 193 104 30 chr12 17316725 17316860 -126469595 + L1MEc LINE L1 2476 2620 -4101 316 195 161 0 chr12 17317233 17317320 -126469135 + MIR SINE MIR 73 173 -89 695 219 112 0 chr12 17317513 17317682 -126468773 - MER58C DNA MER1_type 0 215 28 1777 158 65 3 chr12 17317816 17318138 -126468317 - L1M4 LINE L1 -463 5715 5374 30 0 0 0 chr12 17318163 17318193 -126468262 + AT_rich Low_complexity Low_complexity 1 30 0 1600 184 18 0 chr12 17318582 17318865 -126467590 + AluJb SINE Alu 1 288 -24 181 282 0 70 chr12 17319230 17319301 -126467154 + MIR SINE MIR 160 225 -37 258 244 59 104 chr12 17319749 17319884 -126466571 + MIR SINE MIR 84 212 -50 2473 52 0 52 chr12 17319980 17320308 -126466147 - AluY SINE Alu 0 311 1 1638 170 67 3 chr12 17320580 17320863 -126465592 + AluJb SINE Alu 1 301 -11 239 284 134 31 chr12 17321801 17321928 -126464527 + MIR SINE MIR 106 245 -17 390 310 124 16 chr12 17323264 17323506 -126462949 - L3 LINE CR1 -1125 452 185 1790 158 3 0 chr12 17323608 17323893 -126462562 + AluSx SINE Alu 1 286 -26 350 316 32 13 chr12 17325342 17325500 -126460955 + L1MEd LINE L1 602 762 -5357 22 35 0 0 chr12 17325554 17325583 -126460872 + AT_rich Low_complexity Low_complexity 1 29 0 503 333 40 61 chr12 17325742 17326171 -126460284 - LTR16B LTR ERVL -2 462 43 236 390 20 55 chr12 17326401 17326804 -126459651 + L2 LINE L2 2460 2848 -466 197 263 30 121 chr12 17328321 17328372 -126458083 - MIR3 SINE MIR -4 204 165 352 258 104 39 chr12 17328372 17328554 -126457901 + MER117 DNA MER1_type 1 194 -3 197 263 30 121 chr12 17328554 17328601 -126457854 - MIR3 SINE MIR -43 165 115 2071 102 44 3 chr12 17328712 17329006 -126457449 + AluSc SINE Alu 1 306 -3 422 287 23 16 chr12 17329157 17329286 -126457169 + MIR SINE MIR 43 172 -90 1008 279 59 43 chr12 17329552 17329757 -126456698 + L2 LINE L2 2887 3102 -211 228 86 0 0 chr12 17329757 17329792 -126456663 + (CA)n Simple_repeat Simple_repeat 1 35 0 1008 279 59 43 chr12 17329792 17329959 -126456496 + L2 LINE L2 3102 3265 -48 229 306 76 14 chr12 17329967 17330111 -126456344 - L2 LINE L2 -234 3038 2886 186 191 0 0 chr12 17330164 17330206 -126456249 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2303 90 27 0 chr12 17330236 17330537 -126455918 + AluSg SINE Alu 1 309 -1 4679 88 54 35 chr12 17332751 17333528 -126452927 + L1MA2 LINE L1 5513 6304 0 652 191 0 37 chr12 17334131 17334267 -126452188 + AluJb SINE Alu 159 289 -23 324 304 0 0 chr12 17335324 17335472 -126450983 + A-rich Low_complexity Low_complexity 1 148 0 414 69 0 0 chr12 17335652 17335710 -126450745 + (CA)n Simple_repeat Simple_repeat 2 59 0 303 307 58 58 chr12 17335866 17336003 -126450452 + L2 LINE L2 3136 3272 0 314 309 15 52 chr12 17336089 17336225 -126450230 - L2 LINE L2 -5 3267 3137 319 328 75 8 chr12 17336530 17336664 -126449791 + MIR3 SINE MIR 3 145 -63 1350 156 47 11 chr12 17337353 17337629 -126448826 - AluSp SINE Alu -26 287 2 5643 195 63 23 chr12 17338629 17340001 -126446454 + L1MC3 LINE L1 5640 7067 -718 284 357 38 0 chr12 17340275 17340460 -126445995 - L1ME3A LINE L1 -219 5951 5760 23 0 0 0 chr12 17340471 17340494 -126445961 + AT_rich Low_complexity Low_complexity 1 23 0 2012 132 3 10 chr12 17340531 17340841 -126445614 - AluSg SINE Alu -1 309 2 27 92 0 0 chr12 17340863 17340939 -126445516 + AT_rich Low_complexity Low_complexity 1 76 0 1216 239 42 15 chr12 17340990 17341321 -126445134 + MER58B DNA MER1_type 1 340 -1 213 151 27 14 chr12 17341432 17341505 -126444950 + (TA)n Simple_repeat Simple_repeat 2 75 0 1878 138 14 7 chr12 17342465 17342756 -126443699 + AluJb SINE Alu 5 297 -15 649 236 95 11 chr12 17343006 17343249 -126443206 + L2 LINE L2 2433 2758 -556 22 0 0 0 chr12 17343924 17343946 -126442509 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 17344823 17344844 -126441611 + AT_rich Low_complexity Low_complexity 1 21 0 874 95 0 0 chr12 17344890 17345006 -126441449 - FRAM SINE Alu -5 171 56 1419 182 16 4 chr12 17345015 17345262 -126441193 + AluJb SINE Alu 51 300 -12 1310 211 115 36 chr12 17346630 17346961 -126439494 - MLT1E3 LTR MaLR -7 617 261 182 326 116 23 chr12 17347096 17347182 -126439273 - L2 LINE L2 -52 3220 3127 237 230 40 40 chr12 17347915 17347989 -126438466 + L3b LINE CR1 1393 1466 -117 262 248 29 86 chr12 17348257 17348362 -126438093 - MIR SINE MIR -46 216 118 728 264 106 38 chr12 17348550 17348776 -126437679 + LTR50 LTR ERVL 15 224 -571 210 37 0 0 chr12 17348776 17348803 -126437652 + (TTG)n Simple_repeat Simple_repeat 2 28 0 728 264 106 38 chr12 17348803 17349223 -126437232 + LTR50 LTR ERVL 224 786 -9 259 305 133 9 chr12 17349720 17349825 -126436630 + L2 LINE L2 3155 3272 0 207 0 0 0 chr12 17350060 17350083 -126436372 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 385 97 149 0 chr12 17350619 17350733 -126435722 - AluYa5 SINE Alu -134 167 37 228 247 45 45 chr12 17352997 17353086 -126433369 + L1 LINE L1 4752 4840 -1306 21 57 0 0 chr12 17353165 17353200 -126433255 + AT_rich Low_complexity Low_complexity 1 35 0 1970 165 0 3 chr12 17354169 17354466 -126431989 + AluJo SINE Alu 1 296 -16 1162 187 11 68 chr12 17355079 17355357 -126431098 - AluJb SINE Alu -6 306 45 243 192 72 112 chr12 17355535 17355612 -126430843 - L1ME4a LINE L1 -43 6078 6006 1962 92 70 4 chr12 17355612 17355883 -126430572 - AluSc SINE Alu -20 289 1 243 192 72 112 chr12 17355883 17355930 -126430525 - L1ME4a LINE L1 -115 6006 5959 532 349 35 6 chr12 17357168 17357340 -126429115 + MER91A DNA MER1_type 19 195 -1 1900 190 67 30 chr12 17357668 17358235 -126428220 + L1MD2 LINE L1 5670 6224 -18 1444 210 4 11 chr12 17359045 17359326 -126427129 + AluJo SINE Alu 1 279 -33 833 208 51 0 chr12 17359509 17359725 -126426730 - L1MD3 LINE L1 -21 7974 7748 37 39 0 0 chr12 17360766 17360817 -126425638 + AT_rich Low_complexity Low_complexity 1 51 0 605 284 8 30 chr12 17361228 17361464 -126424991 + LTR16B LTR ERVL 234 464 0 1557 259 56 26 chr12 17361466 17362268 -126424187 - L1ME LINE L1 -5168 902 77 2304 106 0 0 chr12 17362533 17362835 -126423620 + AluSx SINE Alu 9 310 -2 867 304 199 18 chr12 17362913 17363589 -126422866 + L2 LINE L2 2254 3039 -233 240 185 80 80 chr12 17363629 17363673 -126422782 + L1ME LINE L1 5314 5357 -813 1524 158 124 75 chr12 17363673 17364142 -126422313 - LTR22B LTR ERVK 0 492 1 240 185 80 80 chr12 17364142 17364259 -126422196 + L1ME LINE L1 5356 5475 -695 561 206 0 0 chr12 17364550 17364652 -126421803 + FLAM_A SINE Alu 31 132 -10 1466 236 67 76 chr12 17364770 17365295 -126421160 - L1MC4 LINE L1 -3 8039 7511 2130 142 3 7 chr12 17365295 17365604 -126420851 + AluJb SINE Alu 1 308 -4 1466 236 67 76 chr12 17365604 17365761 -126420694 - L1MC4 LINE L1 -531 7511 7362 1726 234 19 28 chr12 17365761 17366227 -126420228 - LTR40b LTR ERVL 0 462 1 1466 236 67 76 chr12 17366227 17366279 -126420176 - L1MC4 LINE L1 -680 7362 7311 22 0 0 0 chr12 17366616 17366638 -126419817 + AT_rich Low_complexity Low_complexity 1 22 0 619 276 62 60 chr12 17366767 17367191 -126419264 + LTR35 LTR ERV1 133 547 -9 2438 202 38 35 chr12 17367568 17367727 -126418728 + L1MC/D LINE L1 4697 4854 -1505 2281 85 0 19 chr12 17367727 17368034 -126418421 - AluY SINE Alu -10 301 1 2438 202 38 35 chr12 17368034 17368762 -126417693 + L1MC/D LINE L1 4854 5589 -770 1615 132 85 34 chr12 17368762 17369057 -126417398 + AluSq SINE Alu 1 310 -3 2438 202 38 35 chr12 17369057 17369246 -126417209 + L1MC/D LINE L1 5589 5776 -583 887 173 48 43 chr12 17369263 17369378 -126417077 - L1M3 LINE L1 -671 5500 5387 1721 148 59 7 chr12 17369378 17369668 -126416787 - AluJo SINE Alu -7 305 1 887 173 48 43 chr12 17369668 17369980 -126416475 - L1M3 LINE L1 -784 5387 5095 596 221 7 7 chr12 17369982 17370131 -126416324 - L1M3 LINE L1 -1205 4941 4793 4052 213 24 32 chr12 17370135 17370868 -126415587 - L1M3 LINE L1 -2105 4041 3303 2444 77 0 10 chr12 17370868 17371179 -126415276 - AluY SINE Alu -3 308 1 4052 213 24 32 chr12 17371179 17371621 -126414834 - L1M3 LINE L1 -2843 3303 2875 2241 110 0 0 chr12 17371621 17371913 -126414542 + AluSg SINE Alu 1 292 -18 4052 213 24 32 chr12 17371913 17371996 -126414459 - L1M3 LINE L1 -3271 2875 2793 705 204 40 62 chr12 17372002 17372246 -126414209 - MLT1E1 LTR MaLR -355 238 5 628 285 99 7 chr12 17372533 17372817 -126413638 - L1ME3A LINE L1 -296 5874 5565 1158 209 0 5 chr12 17372818 17373029 -126413426 + AluJb SINE Alu 87 296 -16 259 312 91 0 chr12 17373053 17373207 -126413248 - L1P5 LINE L1 -635 5521 5354 612 318 86 3 chr12 17373214 17373538 -126412917 - L1ME3A LINE L1 -865 5281 4931 2324 97 3 0 chr12 17373610 17373908 -126412547 - AluSx SINE Alu -13 299 1 314 367 42 5 chr12 17373923 17374138 -126412317 - L1ME3A LINE L1 -1322 4824 4602 1295 260 56 14 chr12 17374180 17374695 -126411760 + L1PB1 LINE L1 15 551 -6312 3887 126 102 82 chr12 17374775 17376119 -126410336 + pTR5 LTR ERV1 741 2438 0 6267 160 32 4 chr12 17376121 17377822 -126408633 + L1PB1 LINE L1 663 2587 -4276 680 187 0 0 chr12 17377821 17377955 -126408500 + L1PB1 LINE L1 4567 4700 -2162 * 5745 106 18 7 chr12 17377962 17378997 -126407458 + L1PB1 LINE L1 5820 6865 -2 339 245 20 66 chr12 17379032 17379086 -126407369 - L1ME3A LINE L1 -1529 4617 4562 1729 161 87 22 chr12 17379086 17379452 -126407003 - MLT1B LTR MaLR 0 390 1 339 245 20 66 chr12 17379452 17379548 -126406907 - L1ME3A LINE L1 -1584 4562 4474 522 283 29 0 chr12 17379620 17379758 -126406697 + LTR33 LTR ERVL 30 171 -350 379 231 0 10 chr12 17379948 17380052 -126406403 + LTR33 LTR ERVL 404 506 -15 254 147 84 11 chr12 17380068 17380163 -126406292 - L1ME3A LINE L1 -1722 4424 4323 207 0 0 0 chr12 17380179 17380202 -126406253 + (CAA)n Simple_repeat Simple_repeat 2 24 0 304 197 15 0 chr12 17380214 17380280 -126406175 + FAM SINE Alu 113 179 0 1681 175 3 29 chr12 17380320 17380634 -126405821 - AluJo SINE Alu -6 306 1 457 276 132 4 chr12 17380721 17380971 -126405484 - L1ME3A LINE L1 -2014 4132 3851 235 333 72 18 chr12 17381225 17381336 -126405119 - L2 LINE L2 0 3272 3156 297 217 152 11 chr12 17381576 17381668 -126404787 - L2 LINE L2 -17 3296 3192 29 28 0 0 chr12 17381795 17381831 -126404624 + AT_rich Low_complexity Low_complexity 1 36 0 941 149 6 12 chr12 17382133 17382294 -126404161 - AluJb SINE Alu -14 298 139 203 114 57 0 chr12 17382791 17382826 -126403629 + CT-rich Low_complexity Low_complexity 3 39 0 202 281 78 0 chr12 17383553 17383617 -126402838 - MIR SINE MIR -111 151 83 209 294 73 15 chr12 17384221 17384289 -126402166 - MER5A DNA MER1_type -85 104 33 200 59 29 0 chr12 17384416 17384450 -126402005 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 274 233 81 23 chr12 17384745 17384831 -126401624 - MER5B DNA MER1_type -1 177 87 40 67 0 0 chr12 17384838 17384913 -126401542 + AT_rich Low_complexity Low_complexity 1 75 0 420 246 105 9 chr12 17384914 17385028 -126401427 - FLAM_A SINE Alu -7 126 2 191 159 0 45 chr12 17385030 17385074 -126401381 - MER5B DNA MER1_type -77 101 60 2351 104 0 0 chr12 17385511 17385819 -126400636 - AluSx SINE Alu -4 308 1 370 251 299 24 chr12 17386034 17386201 -126400254 + MIR SINE MIR 13 225 -37 1452 180 33 0 chr12 17386527 17386771 -126399684 - AluJb SINE Alu -15 297 46 293 306 14 0 chr12 17386852 17386924 -126399531 + L2 LINE L2 3190 3262 -10 559 178 75 0 chr12 17388065 17388172 -126398283 + FLAM_A SINE Alu 12 126 -16 189 383 101 28 chr12 17388486 17388703 -126397752 - L2 LINE L2 -228 3044 2812 25 0 0 0 chr12 17389204 17389229 -126397226 + AT_rich Low_complexity Low_complexity 1 25 0 203 171 0 0 chr12 17389535 17389570 -126396885 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 27 0 0 0 chr12 17389817 17389844 -126396611 + AT_rich Low_complexity Low_complexity 1 27 0 2471 82 0 16 chr12 17391108 17391423 -126395032 + AluSq SINE Alu 1 310 -3 392 282 46 72 chr12 17391739 17391991 -126394464 - L1ME4a LINE L1 -266 5855 5611 2167 88 27 10 chr12 17391991 17392287 -126394168 + AluSq SINE Alu 1 301 -12 392 282 46 72 chr12 17392287 17392339 -126394116 - L1ME4a LINE L1 -510 5611 5559 26 0 0 0 chr12 17392720 17392746 -126393709 + AT_rich Low_complexity Low_complexity 1 26 0 301 188 62 0 chr12 17393328 17393392 -126393063 - MIR SINE MIR -106 156 89 200 224 49 21 chr12 17393699 17393842 -126392613 + (TTATA)n Simple_repeat Simple_repeat 1 147 0 261 196 27 65 chr12 17393859 17394043 -126392412 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 1961 137 10 0 chr12 17394508 17394801 -126391654 + AluSx SINE Alu 1 296 -16 1291 181 8 13 chr12 17394937 17395174 -126391281 + MER46A DNA MER2_type 1 236 0 1533 169 68 20 chr12 17395925 17396220 -126390235 + AluJb SINE Alu 1 309 -3 2073 130 0 35 chr12 17396271 17396587 -126389868 + AluSx SINE Alu 1 305 -7 290 304 0 51 chr12 17397049 17397187 -126389268 - L1ME LINE L1 -448 5673 5543 24 0 0 0 chr12 17397773 17397797 -126388658 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 17399083 17399106 -126387349 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr12 17400476 17400500 -126385955 + AT_rich Low_complexity Low_complexity 1 24 0 2192 89 31 0 chr12 17400580 17400871 -126385584 + AluSg SINE Alu 1 300 -10 247 331 92 0 chr12 17401632 17401762 -126384693 - L2 LINE L2 -213 3059 2918 254 319 91 61 chr12 17401867 17401984 -126384471 - L2 LINE L2 -491 2823 2711 1725 114 0 0 chr12 17401984 17402211 -126384244 + AluSg/x SINE Alu 76 302 -10 254 319 91 61 chr12 17402211 17402311 -126384144 - L2 LINE L2 -603 2711 2615 2208 100 10 0 chr12 17402311 17402602 -126383853 - AluSg SINE Alu -16 294 1 254 319 91 61 chr12 17402602 17402725 -126383730 - L2 LINE L2 -699 2615 2472 207 0 0 0 chr12 17403216 17403239 -126383216 + (T)n Simple_repeat Simple_repeat 1 23 0 394 234 160 62 chr12 17404057 17404301 -126382154 - HAL1b LINE L1 -2 1346 1079 2437 179 42 38 chr12 17404870 17405373 -126381082 - MLT1D LTR MaLR 0 505 1 692 308 224 28 chr12 17405423 17405537 -126380918 + L2 LINE L2 1923 2013 -1300 2417 81 0 3 chr12 17405537 17405833 -126380622 - AluSc SINE Alu -13 296 2 692 308 224 28 chr12 17405833 17406640 -126379815 + L2 LINE L2 2013 3017 -296 314 289 66 16 chr12 17407922 17408043 -126378412 - MIR SINE MIR -45 217 91 284 276 95 0 chr12 17408845 17408950 -126377505 - L2 LINE L2 0 3313 3199 372 325 65 6 chr12 17409257 17409426 -126377029 - MER5A DNA MER1_type -2 187 9 1802 194 149 8 chr12 17409845 17410349 -126376106 - MER90 LTR ERV1 0 575 1 284 321 161 12 chr12 17410538 17410706 -126375749 - MIR SINE MIR -12 250 58 573 247 118 11 chr12 17411048 17411226 -126375229 - MIR3 SINE MIR -3 205 9 3392 16 0 6 chr12 17412347 17412712 -126373743 - SVA Other Other 0 1386 1024 612 252 57 10 chr12 17412803 17412996 -126373459 + MIR SINE MIR 43 246 -16 233 227 0 0 chr12 17413861 17413927 -126372528 - L1ME4a LINE L1 -4 6117 6052 411 231 0 0 chr12 17414130 17414208 -126372247 + MER5A DNA MER1_type 112 189 0 460 227 31 70 chr12 17414322 17414429 -126372026 + L2 LINE L2 3191 3294 -19 2017 144 6 28 chr12 17414429 17414748 -126371707 + AluSx SINE Alu 1 312 0 460 227 31 70 chr12 17414748 17414768 -126371687 + L2 LINE L2 3294 3313 0 186 229 82 0 chr12 17414981 17415042 -126371413 + MIR3 SINE MIR 131 196 -12 1558 111 0 9 chr12 17415108 17415325 -126371130 - AluSg/x SINE Alu -14 296 82 217 277 119 30 chr12 17415349 17415450 -126371005 - L2 LINE L2 -3 3310 3201 231 36 0 0 chr12 17415772 17415800 -126370655 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 704 194 0 0 chr12 17415801 17415925 -126370530 - AluSq/x SINE Alu -189 124 1 260 221 29 29 chr12 17415989 17416057 -126370398 - L2 LINE L2 -21 3292 3225 * 645 262 69 35 chr12 17416055 17416257 -126370198 - MIR SINE MIR -20 242 34 2408 98 0 0 chr12 17416773 17417080 -126369375 - AluSx SINE Alu -4 308 2 605 198 9 9 chr12 17417125 17417241 -126369214 - FLAM_A SINE Alu -26 116 1 489 356 16 11 chr12 17417808 17417999 -126368456 - MIR SINE MIR -51 211 20 394 146 11 56 chr12 17418009 17418098 -126368357 - Charlie3 DNA MER1_type -8 2702 2618 1143 238 99 3 chr12 17418098 17418430 -126368025 - L1MC4 LINE L1 -1153 6889 6526 27 49 0 0 chr12 17418875 17418916 -126367539 + AT_rich Low_complexity Low_complexity 1 41 0 244 227 61 129 chr12 17418922 17419054 -126367401 - L2 LINE L2 -9 3263 3141 21 36 0 0 chr12 17419580 17419608 -126366847 + AT_rich Low_complexity Low_complexity 1 28 0 291 28 0 0 chr12 17420291 17420301 -126366154 + (TG)n Simple_repeat Simple_repeat 1 46 0 291 28 0 0 chr12 17420301 17420337 -126366118 + (TG)n Simple_repeat Simple_repeat 1 36 0 425 303 84 0 chr12 17420580 17420722 -126365733 - MIR3 SINE MIR -11 197 44 274 200 0 33 chr12 17420796 17420856 -126365599 - MER5A DNA MER1_type -16 173 116 2126 86 3 31 chr12 17420883 17421175 -126365280 + AluSc SINE Alu 1 284 -25 204 322 0 35 chr12 17421177 17421264 -126365191 - MER5B DNA MER1_type -70 108 25 2068 119 7 14 chr12 17421970 17422256 -126364199 + AluSq SINE Alu 1 284 -29 27 0 0 0 chr12 17422257 17422284 -126364171 + AT_rich Low_complexity Low_complexity 1 27 0 208 342 61 26 chr12 17422391 17422505 -126363950 - L2 LINE L2 -2 3311 3194 952 138 7 0 chr12 17423179 17423331 -126363124 + L1MC1 LINE L1 6166 6318 -15 2824 10 0 0 chr12 17423341 17423652 -126362803 - AluYa5 SINE Alu 0 311 1 1137 224 126 0 chr12 17424476 17424731 -126361724 + AluJo SINE Alu 1 287 -25 480 258 93 27 chr12 17424832 17425038 -126361417 + MIR SINE MIR 37 262 0 2281 87 23 7 chr12 17426153 17426453 -126360002 - AluSx SINE Alu -7 305 1 739 199 0 0 chr12 17426525 17426656 -126359799 - FLAM_A SINE Alu -2 131 1 2591 35 0 3 chr12 17426785 17427096 -126359359 + AluY SINE Alu 1 310 -1 622 232 67 0 chr12 17427179 17427343 -126359112 + MER105 DNA DNA 30 204 0 315 302 122 0 chr12 17427510 17427649 -126358806 - MIR SINE MIR 0 262 107 244 310 30 50 chr12 17427954 17428054 -126358401 - MIR SINE MIR -149 113 16 1383 154 53 0 chr12 17428339 17428605 -126357850 - L1MA7 LINE L1 -5 6286 6007 321 265 43 9 chr12 17430265 17430450 -126356005 + MIR SINE MIR 20 247 -15 1835 144 58 120 chr12 17431949 17432434 -126354021 + MSTB2 LTR MaLR 1 455 -2 1744 166 39 7 chr12 17432699 17432983 -126353472 + AluJb SINE Alu 1 293 -19 3319 145 46 6 chr12 17433026 17433652 -126352803 - L1MA8 LINE L1 -136 6155 5505 302 240 0 21 chr12 17433657 17433753 -126352702 - HAL1 LINE L1 -1244 1263 1170 212 369 107 7 chr12 17433996 17434145 -126352310 + L2 LINE L2 2891 3054 -218 193 200 29 0 chr12 17434161 17434196 -126352259 - MIR SINE MIR -132 76 41 2318 80 7 10 chr12 17434635 17434936 -126351519 + AluY SINE Alu 1 300 -11 2137 139 0 0 chr12 17435535 17435830 -126350625 + AluJb SINE Alu 1 295 -17 2335 229 43 4 chr12 17436058 17436570 -126349885 - MLT1F LTR MaLR -7 535 4 433 300 53 79 chr12 17436638 17437055 -126349400 - L1MC4 LINE L1 -16 8026 7621 347 299 37 13 chr12 17437099 17437171 -126349284 - L1MC5 LINE L1 -525 7495 7426 912 114 0 0 chr12 17437171 17437311 -126349144 + (TCCTG)n Simple_repeat Simple_repeat 4 143 0 1532 193 65 4 chr12 17437311 17437586 -126348869 - AluJo SINE Alu -20 292 1 347 299 37 13 chr12 17437586 17437944 -126348511 - L1MC5 LINE L1 -593 7427 7167 240 313 35 61 chr12 17438211 17438326 -126348129 - L2 LINE L2 -2 3270 3159 27 29 0 0 chr12 17438602 17438636 -126347819 + AT_rich Low_complexity Low_complexity 1 34 0 1321 188 58 26 chr12 17438875 17439252 -126347203 + MER114 LTR ERV 1 389 -259 345 189 87 87 chr12 17439252 17439379 -126347076 + MLT1H1 LTR MaLR 1 127 -415 439 232 85 31 chr12 17439508 17439739 -126346716 + MLT1H1 LTR MaLR 290 537 -12 468 242 90 22 chr12 17439754 17439977 -126346478 + MER114 LTR ERV 411 648 0 2128 114 0 7 chr12 17440660 17440981 -126345474 - AluSc SINE Alu 0 309 1 198 71 0 0 chr12 17441206 17441234 -126345221 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 5632 134 19 6 chr12 17441710 17442945 -126343510 - L1PB2 LINE L1 0 6151 4899 228 224 0 17 chr12 17443232 17443290 -126343165 + MER94 DNA DNA 78 134 0 357 275 50 17 chr12 17443694 17443814 -126342641 + L2 LINE L2 2640 2763 -551 341 266 53 35 chr12 17443857 17444026 -126342429 + MER112 DNA MER1_type 7 178 -82 315 0 0 0 chr12 17444036 17444071 -126342384 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 39433 60 7 1 chr12 17444071 17450168 -126336287 - L1PA5 LINE L1 -12 6142 11 262 300 22 0 chr12 17450178 17450268 -126336187 + MER112 DNA MER1_type 160 251 -9 527 314 174 23 chr12 17450273 17450401 -126336054 + L2 LINE L2 2804 2911 -402 4284 74 4 2 chr12 17450401 17450954 -126335501 - MER41A LTR ERV1 0 554 1 527 314 174 23 chr12 17450954 17451268 -126335187 + L2 LINE L2 2911 3313 0 465 317 34 10 chr12 17451351 17451559 -126334896 - MER115 DNA AcHobo -440 253 41 387 283 92 72 chr12 17451936 17452227 -126334228 - L1ME4a LINE L1 -4 6117 5802 2322 103 3 0 chr12 17452227 17452529 -126333926 - AluSg SINE Alu -7 303 1 387 283 92 72 chr12 17452529 17452692 -126333763 - L1ME4a LINE L1 -319 5802 5644 1232 178 43 10 chr12 17452806 17453110 -126333345 - MER33 DNA MER1_type -9 315 2 675 169 64 87 chr12 17453274 17453446 -126333009 - MER20 DNA MER1_type 0 219 52 187 378 88 42 chr12 17453755 17453972 -126332483 + L3b LINE CR1 1298 1524 -59 187 352 84 14 chr12 17454018 17454160 -126332295 + L3b LINE CR1 1185 1336 -247 504 295 80 40 chr12 17454720 17455022 -126331433 - L2 LINE L2 -155 3117 2804 2131 113 10 0 chr12 17455348 17455641 -126330814 + AluSx SINE Alu 1 296 -16 283 128 0 0 chr12 17457014 17457061 -126329394 - MADE1 DNA Mariner -1 79 33 367 338 83 6 chr12 17459194 17459351 -126327104 - MIR3 SINE MIR -6 202 34 320 254 91 9 chr12 17460516 17460626 -126325829 - L1MC4 LINE L1 -1336 6706 6588 2320 107 3 0 chr12 17460686 17460994 -126325461 + AluSx SINE Alu 1 309 -3 302 304 107 64 chr12 17461068 17461480 -126324975 - L2 LINE L2 -216 3056 2629 600 179 81 8 chr12 17461723 17461846 -126324609 + FLAM_C SINE Alu 1 132 -11 2158 132 0 7 chr12 17462071 17462374 -126324081 - AluSx SINE Alu -11 301 1 189 250 0 0 chr12 17463072 17463132 -126323323 + CT-rich Low_complexity Low_complexity 3 62 0 611 223 141 92 chr12 17464320 17464647 -126321808 - MLT1J LTR MaLR -76 435 93 1537 68 14 27 chr12 17465626 17465847 -126320608 - L1PA10 LINE L1 -11 6157 5940 331 321 130 36 chr12 17465971 17466410 -126320045 + L2 LINE L2 1288 1767 -1547 374 182 0 0 chr12 17466412 17466488 -126319967 + AluSx SINE Alu 1 57 -245 1645 151 0 0 chr12 17466572 17466811 -126319644 + AluSx SINE Alu 61 299 -13 303 344 77 18 chr12 17466863 17467084 -126319371 + L2 LINE L2 1896 2129 -1185 1487 124 0 113 chr12 17467398 17467681 -126318774 + AluJb SINE Alu 1 251 -61 216 0 0 0 chr12 17467751 17467775 -126318680 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr12 17467815 17467844 -126318611 + AT_rich Low_complexity Low_complexity 1 29 0 483 310 121 6 chr12 17468897 17469071 -126317384 + MIR SINE MIR 13 206 -56 321 333 47 29 chr12 17469209 17469380 -126317075 + MIR3 SINE MIR 34 207 -1 24 0 0 0 chr12 17470857 17470881 -126315574 + AT_rich Low_complexity Low_complexity 1 24 0 2424 94 0 3 chr12 17471839 17472148 -126314307 - AluSq SINE Alu -5 308 1 636 246 47 19 chr12 17473898 17474154 -126312301 + L1ME4a LINE L1 5669 5931 -190 4511 184 67 92 chr12 17474254 17475370 -126311085 - L1MC4 LINE L1 -1 8041 6977 4698 109 4 24 chr12 17475370 17476074 -126310381 - LTR8 LTR ERV1 0 691 2 4511 184 67 92 chr12 17476074 17476579 -126309876 - L1MC4 LINE L1 -1065 6977 6461 276 264 88 11 chr12 17477133 17477224 -126309231 - MIR SINE MIR -74 134 37 206 388 12 0 chr12 17477700 17477780 -126308675 + MIR SINE MIR 43 123 -85 2263 111 0 16 chr12 17477781 17478088 -126308367 - AluSq SINE Alu -11 302 1 269 269 194 32 chr12 17478765 17478951 -126307504 - MIR SINE MIR -17 245 30 650 321 57 24 chr12 17479176 17479422 -126307033 - MIR SINE MIR -6 256 3 551 295 133 21 chr12 17480462 17480696 -126305759 - MIR SINE MIR -2 260 1 2372 87 0 0 chr12 17481397 17481706 -126304749 + AluY SINE Alu 1 309 -2 632 354 91 20 chr12 17483242 17483854 -126302601 + L2 LINE L2 2397 3054 -218 264 316 20 31 chr12 17484900 17484998 -126301457 - MIR SINE MIR -153 109 13 258 286 45 13 chr12 17485303 17485321 -126301134 - L1MA10 LINE L1 0 6334 6317 599 208 56 81 chr12 17485321 17485605 -126300850 - L1ME2 LINE L1 -9 6155 5879 2076 244 78 46 chr12 17485676 17487561 -126298894 - L1MEc LINE L1 -2758 3457 1632 2369 114 0 0 chr12 17487561 17487867 -126298588 - AluSx SINE Alu -6 306 1 2076 244 78 46 chr12 17487867 17488056 -126298399 - L1MEc LINE L1 -4583 1632 1450 7412 171 151 39 chr12 17488056 17489634 -126296821 - MER52A LTR ERV1 0 1755 1 2076 244 78 46 chr12 17489634 17489880 -126296575 - L1MEc LINE L1 -4765 1450 880 180 77 0 0 chr12 17490751 17490777 -126295678 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 6181 95 13 0 chr12 17490780 17491765 -126294690 - L1PA13 LINE L1 -1 6162 5175 422 275 28 0 chr12 17491986 17492095 -126294360 - MIR SINE MIR -1 261 150 27 29 0 0 chr12 17493625 17493659 -126292796 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr12 17493811 17493837 -126292618 + AT_rich Low_complexity Low_complexity 1 26 0 185 333 0 0 chr12 17494471 17494516 -126291939 + L2 LINE L2 3218 3262 -10 2487 51 0 0 chr12 17494791 17495083 -126291372 - AluY SINE Alu -19 292 1 415 269 83 2 chr12 17495267 17495415 -126291040 - MIR SINE MIR -67 141 4 355 357 63 40 chr12 17496038 17496338 -126290117 + L3 LINE CR1 1129 1435 -142 315 0 0 0 chr12 17496488 17496523 -126289932 + (TG)n Simple_repeat Simple_repeat 2 36 0 1529 215 66 18 chr12 17496592 17497029 -126289426 - MLT1C LTR MaLR 0 467 10 303 252 0 137 chr12 17498299 17498407 -126288048 - MIR SINE MIR -56 152 63 353 251 11 99 chr12 17498407 17498598 -126287857 - MER5B DNA MER1_type -4 174 1 303 252 0 137 chr12 17498598 17498620 -126287835 - MIR SINE MIR -145 63 40 2072 107 4 0 chr12 17498642 17498947 -126287508 - AluSx SINE Alu 0 306 1 228 302 0 0 chr12 17499557 17499610 -126286845 - L2 LINE L2 -14 3299 3247 186 43 0 0 chr12 17500095 17500118 -126286337 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 640 49 0 0 chr12 17501495 17501576 -126284879 + L1PA8A LINE L1 6018 6098 -33 2019 40 4 0 chr12 17502314 17502561 -126283894 - L1PA4 LINE L1 0 6155 5908 28 0 0 0 chr12 17502794 17502822 -126283633 + AT_rich Low_complexity Low_complexity 1 28 0 667 183 120 26 chr12 17502822 17503013 -126283442 - L1MA9 LINE L1 -35 6277 6069 2070 185 21 16 chr12 17503329 17503761 -126282694 - MLT1C LTR MaLR -33 434 1 25 31 0 0 chr12 17505076 17505108 -126281347 + AT_rich Low_complexity Low_complexity 1 32 0 1681 164 0 29 chr12 17505491 17505772 -126280683 + AluJo SINE Alu 1 273 -39 184 313 169 66 chr12 17506947 17507113 -126279342 + L2 LINE L2 3075 3257 -15 266 236 0 0 chr12 17507326 17507381 -126279074 + MIR SINE MIR 197 251 -11 2079 151 0 0 chr12 17507502 17507814 -126278641 - AluSx SINE Alu 0 312 1 272 0 79 0 chr12 17508163 17508201 -126278254 + T-rich Low_complexity Low_complexity 5 45 0 1914 138 0 7 chr12 17508201 17508483 -126277972 - AluSx SINE Alu -32 280 1 250 171 0 0 chr12 17509068 17509109 -126277346 - MLT1L LTR MaLR -221 394 354 303 296 164 6 chr12 17509280 17509439 -126277016 + MIR SINE MIR 9 192 -70 1228 132 66 31 chr12 17511630 17511858 -126274597 - MER46A DNA MER2_type 0 236 1 288 301 12 0 chr12 17512410 17512493 -126273962 + L2 LINE L2 3186 3269 -3 709 194 157 8 chr12 17513109 17513357 -126273098 - MER33 DNA MER1_type -32 292 8 2179 141 21 24 chr12 17513591 17513967 -126272488 + THE1C LTR MaLR 1 375 0 11028 97 12 28 chr12 17513967 17515572 -126270883 + THE1C-int LTR MaLR 1 1580 0 2101 136 24 27 chr12 17515572 17515948 -126270507 + THE1C LTR MaLR 1 375 0 314 146 10 126 chr12 17516269 17516372 -126270083 - L1MB7 LINE L1 -19 6165 6075 2168 128 26 0 chr12 17516848 17517152 -126269303 + AluJb SINE Alu 1 312 0 41 36 0 0 chr12 17519105 17519160 -126267295 + AT_rich Low_complexity Low_complexity 1 55 0 2117 146 38 8 chr12 17520131 17520502 -126265953 + MSTB LTR MaLR 1 382 -44 1253 150 191 24 chr12 17520511 17520805 -126265650 - MSTA LTR MaLR -85 343 1 349 135 0 0 chr12 17520805 17520853 -126265602 + MSTB LTR MaLR 379 426 0 7739 173 90 11 chr12 17520853 17522383 -126264072 + MSTB-int LTR MaLR 1 1651 0 2675 135 49 5 chr12 17522383 17522791 -126263664 + MSTB LTR MaLR 1 426 0 4758 217 92 80 chr12 17522880 17523804 -126262651 + L1MCa LINE L1 16 928 -5498 2822 3 0 0 chr12 17523804 17524107 -126262348 - AluYa5 SINE Alu -8 303 1 4758 217 92 80 chr12 17524107 17527660 -126258795 + L1MCa LINE L1 928 4465 -1961 1169 233 164 32 chr12 17527662 17528100 -126258355 + MLT1D LTR MaLR 3 498 -7 531 269 90 0 chr12 17528105 17528306 -126258149 + L1MCa LINE L1 4459 4677 -1749 4987 175 56 22 chr12 17528325 17529473 -126256982 + L1MC3 LINE L1 6599 7785 0 2158 29 44 18 chr12 17529483 17529793 -126256662 + AluY SINE Alu 1 317 0 348 304 160 0 chr12 17529922 17530047 -126256408 - L2 LINE L2 -1 3271 3127 2360 91 0 35 chr12 17530244 17530562 -126255893 - AluSg SINE Alu -3 307 1 773 252 152 29 chr12 17530853 17531202 -126255253 + L2 LINE L2 2922 3313 0 234 256 0 0 chr12 17531492 17531535 -126254920 - MIR SINE MIR -138 70 28 366 255 21 0 chr12 17531824 17531918 -126254537 - MER5A DNA MER1_type -80 109 14 580 266 64 46 chr12 17532024 17532242 -126254213 + MIR SINE MIR 38 259 -3 387 0 0 0 chr12 17533912 17533955 -126252500 + (TG)n Simple_repeat Simple_repeat 2 44 0 233 288 91 53 chr12 17534371 17534503 -126251952 - MER5B DNA MER1_type -2 176 51 227 257 29 57 chr12 17534544 17534614 -126251841 - L2 LINE L2 -1 3271 3204 187 250 0 0 chr12 17535324 17535372 -126251083 + MIR SINE MIR 51 98 -164 216 321 47 65 chr12 17535374 17535589 -126250866 - L2 LINE L2 -667 2647 2437 23 0 0 0 chr12 17537143 17537166 -126249289 + AT_rich Low_complexity Low_complexity 1 23 0 25 83 0 0 chr12 17537594 17537654 -126248801 + AT_rich Low_complexity Low_complexity 1 60 0 386 273 43 43 chr12 17537959 17538098 -126248357 - MIR SINE MIR -100 162 24 511 283 13 0 chr12 17538397 17538549 -126247906 + MIR3 SINE MIR 49 202 -6 404 243 104 21 chr12 17539480 17539624 -126246831 - MIR3 SINE MIR -9 199 44 469 250 104 26 chr12 17540964 17541156 -126245299 + L3b LINE CR1 1178 1384 -199 794 183 112 6 chr12 17541252 17541421 -126245034 - MER5A DNA MER1_type -1 188 2 297 214 117 84 chr12 17542044 17542149 -126244306 - LTR67 LTR ERVL -12 545 432 2340 157 65 2 chr12 17542149 17542550 -126243905 - MSTA LTR MaLR -2 426 1 297 214 117 84 chr12 17542550 17542598 -126243857 - LTR67 LTR ERVL -125 432 387 255 83 0 0 chr12 17542609 17542645 -126243810 + U2 snRNA snRNA 1 36 -152 310 326 0 0 chr12 17542781 17542873 -126243582 - LTR67 LTR ERVL -385 172 81 2444 63 0 7 chr12 17543317 17543620 -126242835 - AluY SINE Alu -10 301 1 878 262 178 22 chr12 17543673 17544307 -126242148 - HAL1b LINE L1 -475 873 141 720 286 66 9 chr12 17547234 17547461 -126238994 - MIR SINE MIR -13 249 10 232 290 0 43 chr12 17547522 17547591 -126238864 - L3 LINE CR1 -3 1574 1509 3888 189 39 22 chr12 17548526 17549167 -126237288 + MER4D LTR ERV1 1 629 -274 2589 114 62 5 chr12 17549167 17549572 -126236883 + MSTA LTR MaLR 1 428 0 3888 189 39 22 chr12 17549572 17549599 -126236856 + MER4D LTR ERV1 629 654 -249 1481 203 54 135 chr12 17549599 17550265 -126236190 + LTR9 LTR ERV1 1 612 0 3888 189 39 22 chr12 17550265 17550467 -126235988 + MER4D LTR ERV1 654 887 -16 2198 113 0 3 chr12 17550626 17550910 -126235545 + AluSq SINE Alu 1 283 -30 1686 72 0 0 chr12 17551338 17551547 -126234908 + AluY SINE Alu 97 305 -6 1131 212 45 38 chr12 17551600 17551888 -126234567 + Charlie1b DNA MER1_type 5 294 -229 489 156 0 0 chr12 17551902 17551992 -126234463 + Charlie1b DNA MER1_type 428 517 -6 286 254 36 17 chr12 17552064 17552181 -126234274 + L1ME LINE L1 5467 5585 -536 1360 164 0 27 chr12 17552195 17552415 -126234040 + AluJo SINE Alu 1 214 -98 258 188 0 0 chr12 17552416 17552464 -126233991 + L1 LINE L1 3586 3633 -2513 21 0 0 0 chr12 17552467 17552488 -126233967 + AT_rich Low_complexity Low_complexity 1 21 0 2115 134 0 0 chr12 17552488 17552786 -126233669 - AluSx SINE Alu -14 298 1 9380 156 32 83 chr12 17552792 17555336 -126231119 + L1PA13 LINE L1 3627 6159 -4 1110 145 0 22 chr12 17555339 17555518 -126230937 + FRAM SINE Alu 1 175 -1 4795 133 32 45 chr12 17555518 17555807 -126230648 + L1MA4 LINE L1 5322 5613 -687 1573 98 0 0 chr12 17555807 17556012 -126230443 + AluSp SINE Alu 106 310 -3 4795 133 32 45 chr12 17556012 17556710 -126229745 + L1MA4 LINE L1 5613 6297 -3 4005 121 180 81 chr12 17557530 17558951 -126227504 + pTR5 LTR ERV1 743 2438 0 1905 101 78 46 chr12 17560331 17560679 -126225776 + MER46B DNA MER2_type 3 236 0 317 293 106 43 chr12 17560698 17561114 -126225341 - MLT1K LTR MaLR -36 552 111 187 365 58 19 chr12 17561320 17561476 -126224979 - L2 LINE L2 -824 2490 2329 227 294 112 49 chr12 17562248 17562391 -126224064 + L2 LINE L2 3101 3252 -20 1001 268 28 12 chr12 17562530 17562780 -126223675 + MIR SINE MIR 2 255 -7 669 222 36 5 chr12 17563048 17563242 -126223213 + L1MD3 LINE L1 7796 7995 0 321 279 203 33 chr12 17563302 17564030 -126222425 + L1ME4a LINE L1 5269 6120 -1 588 214 26 17 chr12 17564326 17564443 -126222012 + FLAM_A SINE Alu 5 122 -11 242 294 143 16 chr12 17564444 17564570 -126221885 + MIR SINE MIR 114 255 -7 415 280 42 28 chr12 17564822 17564965 -126221490 + L2 LINE L2 3169 3313 0 700 197 0 7 chr12 17565188 17565340 -126221115 - MER63 DNA MER1_type 0 1061 911 289 141 47 94 chr12 17565370 17565416 -126221039 - MER63 DNA MER1_type -129 707 660 2249 119 0 3 chr12 17565416 17565718 -126220737 - AluSg SINE Alu -8 302 2 289 141 47 94 chr12 17565718 17565756 -126220699 - MER63 DNA MER1_type -176 660 1 254 155 35 0 chr12 17566170 17566228 -126220227 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 1915 242 41 37 chr12 17566862 17567818 -126218637 - L1ME2 LINE L1 -2 6295 5370 695 246 20 15 chr12 17568757 17568956 -126217499 - MARNA DNA Mariner -18 568 369 328 280 51 25 chr12 17569356 17569513 -126216942 - MARNA DNA Mariner -228 358 198 240 274 83 0 chr12 17569571 17569655 -126216800 - MLT1I LTR MaLR -73 336 246 21 36 0 0 chr12 17570009 17570037 -126216418 + AT_rich Low_complexity Low_complexity 1 28 0 264 241 0 17 chr12 17571096 17571154 -126215301 + L2 LINE L2 3007 3063 -209 443 314 136 34 chr12 17571196 17571432 -126215023 - MIR SINE MIR -1 261 2 613 174 0 0 chr12 17571500 17571609 -126214846 - MER45B DNA AcHobo -368 672 564 962 179 19 82 chr12 17571609 17571877 -126214578 + MLT1A1 LTR MaLR 113 363 -2 271 310 123 29 chr12 17572003 17572174 -126214281 + MIR SINE MIR 6 192 -70 180 0 0 0 chr12 17574019 17574039 -126212416 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 449 244 89 16 chr12 17574276 17574399 -126212056 - MIR SINE MIR -44 218 87 586 179 137 24 chr12 17576973 17577141 -126209314 + LTR41 LTR ERVL 1 187 -586 441 252 29 81 chr12 17577192 17577438 -126209017 + LTR41 LTR ERVL 462 694 -79 454 305 39 19 chr12 17577556 17577710 -126208745 - MER91A DNA MER1_type -22 174 18 217 345 0 0 chr12 17577764 17577822 -126208633 - L2 LINE L2 -93 3179 3122 2253 227 28 30 chr12 17577885 17577950 -126208505 - MLT1F LTR MaLR -9 533 469 2028 186 38 26 chr12 17577950 17578375 -126208080 + MSTB1 LTR MaLR 1 430 -2 2253 227 28 30 chr12 17578375 17578843 -126207612 - MLT1F LTR MaLR -73 469 1 216 135 0 0 chr12 17579687 17579724 -126206731 + (CA)n Simple_repeat Simple_repeat 2 38 0 668 253 30 36 chr12 17580028 17580333 -126206122 - AluSq SINE Alu 0 303 1 21 0 0 0 chr12 17580545 17580566 -126205889 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr12 17580702 17580737 -126205718 + GC_rich Low_complexity Low_complexity 1 35 0 29 78 0 0 chr12 17580764 17580828 -126205627 + GC_rich Low_complexity Low_complexity 1 64 0 2244 124 0 6 chr12 17581388 17581703 -126204752 - AluSq SINE Alu 0 313 1 21 0 0 0 chr12 17581909 17581930 -126204525 + AT_rich Low_complexity Low_complexity 1 21 0 213 121 0 0 chr12 17582131 17582164 -126204291 + (CA)n Simple_repeat Simple_repeat 2 34 0 973 220 31 102 chr12 17582525 17582907 -126203548 + MLT2D LTR ERVL 15 369 -45 225 91 0 0 chr12 17582927 17582960 -126203495 - MLT2D LTR ERVL 0 414 382 271 161 18 0 chr12 17583006 17583062 -126203393 + MLT2D LTR ERVL 464 520 0 399 232 92 8 chr12 17583362 17583482 -126202973 - MLT1H LTR MaLR 0 542 420 323 244 113 9 chr12 17583587 17583702 -126202753 - MLT1H LTR MaLR -307 242 116 2384 143 64 2 chr12 17584131 17584538 -126201917 + MSTB1 LTR MaLR 1 432 0 227 198 24 180 chr12 17584730 17584897 -126201558 + MIR SINE MIR 120 260 -2 2408 43 0 0 chr12 17586538 17586815 -126199640 + AluY SINE Alu 3 279 -32 207 0 0 0 chr12 17586818 17586841 -126199614 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 239 309 0 0 chr12 17587278 17587333 -126199122 + L2 LINE L2 3198 3252 -61 1041 166 0 17 chr12 17588246 17588421 -126198034 + AluJo SINE Alu 126 297 -15 560 217 32 74 chr12 17588724 17588913 -126197542 + MIR SINE MIR 12 192 -70 21 82 0 0 chr12 17588929 17588978 -126197477 + AT_rich Low_complexity Low_complexity 1 49 0 2178 128 3 3 chr12 17589128 17589434 -126197021 + AluSx SINE Alu 1 306 -6 249 108 0 0 chr12 17589822 17589859 -126196596 + (CA)n Simple_repeat Simple_repeat 1 37 0 623 169 81 16 chr12 17591529 17591653 -126194802 - FLAM_C SINE Alu 0 133 2 24 0 0 0 chr12 17592055 17592079 -126194376 + AT_rich Low_complexity Low_complexity 1 24 0 663 215 36 113 chr12 17592404 17592678 -126193777 - MER102b DNA MER1_type -5 336 84 220 91 0 55 chr12 17592679 17592734 -126193721 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 493 178 0 59 chr12 17592856 17592974 -126193481 - THE1C LTR MaLR -264 111 1 10374 111 36 8 chr12 17592974 17594511 -126191944 - THE1C-int LTR MaLR 0 1580 1 453 111 0 0 chr12 17594552 17594615 -126191840 + L1PA7 LINE L1 6077 6139 -15 463 222 6 11 chr12 17594654 17594834 -126191621 + (TA)n Simple_repeat Simple_repeat 1 179 0 1761 107 103 19 chr12 17594834 17595161 -126191294 - THE1C LTR MaLR -23 409 1 1435 206 34 3 chr12 17595161 17595457 -126190998 + MLT1A1 LTR MaLR 61 365 0 202 269 11 65 chr12 17596419 17596512 -126189943 + MIR SINE MIR 125 212 -50 2315 96 3 0 chr12 17596522 17596824 -126189631 - AluSp SINE Alu -10 303 1 555 262 14 0 chr12 17596950 17597095 -126189360 + MER58B DNA MER1_type 195 341 0 216 0 0 0 chr12 17598086 17598110 -126188345 + (T)n Simple_repeat Simple_repeat 1 24 0 327 307 112 63 chr12 17598310 17598515 -126187940 - MIR SINE MIR -24 238 24 1730 185 46 6 chr12 17599075 17599426 -126187029 - MLT1A1 LTR MaLR 0 365 1 333 258 111 35 chr12 17599678 17600156 -126186299 + L1MC4 LINE L1 7278 7893 -149 454 75 43 21 chr12 17600157 17600251 -126186204 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 288 281 9 9 chr12 17600271 17600385 -126186070 + L1MC4 LINE L1 7929 8042 0 410 239 130 57 chr12 17600396 17600626 -126185829 + L1ME3 LINE L1 5895 6141 -21 594 265 33 7 chr12 17601402 17601553 -126184902 + L2 LINE L2 3159 3313 0 570 288 55 55 chr12 17601715 17602059 -126184396 - MLT1J1 LTR MaLR 0 446 103 712 194 32 75 chr12 17602099 17602285 -126184170 + MER45A DNA AcHobo 1 178 0 5012 151 21 37 chr12 17603036 17605115 -126181340 - L1PB4 LINE L1 -2 6154 4116 1600 206 97 9 chr12 17605117 17605549 -126180906 - L1ME1 LINE L1 -298 5868 5399 1351 273 42 50 chr12 17605652 17605777 -126180678 - L1MEc LINE L1 -4712 1684 1560 1901 160 27 0 chr12 17605777 17606070 -126180385 + AluSx SINE Alu 1 301 -11 1351 273 42 50 chr12 17606070 17606191 -126180264 - L1MEc LINE L1 -4836 1560 1440 1739 167 32 35 chr12 17606191 17606503 -126179952 - AluJo SINE Alu -1 311 1 1351 273 42 50 chr12 17606503 17606811 -126179644 - L1MEc LINE L1 -4956 1440 1134 2379 110 22 27 chr12 17606811 17607176 -126179279 - THE1B LTR MaLR -1 363 1 1351 273 42 50 chr12 17607176 17607425 -126179030 - L1MEc LINE L1 -5262 1134 885 1137 264 43 14 chr12 17607457 17607828 -126178627 - L1MEc LINE L1 -5980 416 35 2334 106 0 0 chr12 17607836 17608137 -126178318 - AluSx SINE Alu -11 301 1 21 0 0 0 chr12 17609340 17609361 -126177094 + AT_rich Low_complexity Low_complexity 1 21 0 197 310 206 43 chr12 17610026 17610423 -126176032 - L2 LINE L2 -889 2425 1964 915 135 45 0 chr12 17610516 17610672 -126175783 + THE1A LTR MaLR 62 224 -131 310 279 77 5 chr12 17610805 17611013 -126175442 + L1ME4a LINE L1 5651 5873 -248 207 344 16 0 chr12 17612077 17612141 -126174314 + L2 LINE L2 3204 3268 -4 424 274 109 25 chr12 17612257 17612292 -126174163 - MIR SINE MIR 0 262 231 396 0 0 0 chr12 17612292 17612336 -126174119 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 424 274 109 25 chr12 17612336 17612501 -126173954 - MIR SINE MIR -31 231 45 24 53 0 0 chr12 17613033 17613071 -126173384 + AT_rich Low_complexity Low_complexity 1 38 0 2593 83 20 0 chr12 17613077 17613425 -126173030 + THE1A LTR MaLR 1 355 0 458 178 188 0 chr12 17613447 17613548 -126172907 - FLAM_C SINE Alu -23 120 1 500 99 0 12 chr12 17613724 17613805 -126172650 + (TA)n Simple_repeat Simple_repeat 2 81 0 2299 151 61 7 chr12 17614334 17614744 -126171711 + MSTB1 LTR MaLR 1 432 0 359 301 91 0 chr12 17615591 17615734 -126170721 - L1ME LINE L1 -422 5699 5544 262 372 69 14 chr12 17615934 17616079 -126170376 - L2 LINE L2 -4 3268 3116 656 274 65 74 chr12 17616920 17617351 -126169104 + LTR16A LTR ERVL 20 446 -4 309 196 77 115 chr12 17617921 17618130 -126168325 - L1MC5 LINE L1 -439 7522 7322 574 217 99 103 chr12 17618183 17618245 -126168210 - L1MC5 LINE L1 -1055 6906 6845 2007 132 0 0 chr12 17618245 17618563 -126167892 - AluSx SINE Alu 0 323 6 574 217 99 103 chr12 17618563 17618770 -126167685 - L1MC5 LINE L1 -1116 6845 6636 369 313 55 39 chr12 17619226 17619810 -126166645 - HAL1b LINE L1 -718 630 38 513 271 150 10 chr12 17620768 17620975 -126165480 - MIR SINE MIR -7 255 20 23 68 0 0 chr12 17620981 17621025 -126165430 + AT_rich Low_complexity Low_complexity 1 44 0 578 311 75 37 chr12 17621374 17621615 -126164840 + MIR SINE MIR 9 258 -4 474 261 45 20 chr12 17623143 17623342 -126163113 - Zaphod DNA AcHobo -2674 1357 1154 1032 214 52 18 chr12 17623349 17623681 -126162774 + MER74C LTR ERVL 2 489 -133 1285 189 59 75 chr12 17623681 17624052 -126162403 - MLT1A1 LTR MaLR 0 365 1 1032 214 52 18 chr12 17624052 17624158 -126162297 + MER74C LTR ERVL 489 590 -32 2791 226 88 67 chr12 17624181 17624328 -126162127 - Zaphod DNA AcHobo -2868 1163 1021 2065 100 0 14 chr12 17624328 17624608 -126161847 - AluSc SINE Alu -33 276 1 2791 226 88 67 chr12 17624608 17625026 -126161429 - Zaphod DNA AcHobo -3010 1021 613 855 183 4 108 chr12 17625026 17625266 -126161189 + MER20 DNA MER1_type 1 215 -4 2791 226 88 67 chr12 17625266 17625838 -126160617 - Zaphod DNA AcHobo -3418 613 1 430 195 9 18 chr12 17626701 17626814 -126159641 + CT-rich Low_complexity Low_complexity 1 112 0 220 319 118 34 chr12 17627442 17627561 -126158894 + MIR SINE MIR 71 199 -63 2447 54 0 0 chr12 17628031 17628325 -126158130 - AluY SINE Alu -17 294 1 223 321 0 0 chr12 17628513 17628566 -126157889 - MIR SINE MIR -10 252 200 512 56 0 0 chr12 17628737 17628809 -126157646 + Alu SINE Alu 236 307 -5 264 345 132 23 chr12 17629601 17629821 -126156634 - L2 LINE L2 -896 2418 2175 2391 112 0 14 chr12 17630683 17631041 -126155414 + THE1B LTR MaLR 1 353 -11 454 188 107 9 chr12 17631245 17631357 -126155098 - MER112 DNA MER1_type -27 233 111 1867 216 22 13 chr12 17631484 17631942 -126154513 + MLT1C LTR MaLR 1 462 -5 1704 195 17 66 chr12 17632749 17633055 -126153400 - MLT1C LTR MaLR 0 467 191 2270 86 0 0 chr12 17633055 17633358 -126153097 - AluSc SINE Alu 0 303 1 1704 195 17 66 chr12 17633358 17633532 -126152923 - MLT1C LTR MaLR -276 191 10 236 239 0 14 chr12 17633950 17634021 -126152434 - MLT1B LTR MaLR -183 207 138 816 286 53 0 chr12 17634515 17634760 -126151695 + MIR SINE MIR 5 262 0 1398 70 0 0 chr12 17634902 17635073 -126151382 - AluY SINE Alu -10 301 131 210 343 0 0 chr12 17636212 17636279 -126150176 - MIR3 SINE MIR -11 197 131 433 344 68 52 chr12 17636322 17636648 -126149807 + L2 LINE L2 2956 3286 -27 403 287 7 75 chr12 17637053 17637234 -126149221 + MER5B DNA MER1_type 4 184 -5 1530 162 159 14 chr12 17637365 17637711 -126148744 + MSTD LTR MaLR 1 396 0 378 228 29 59 chr12 17639230 17639366 -126147089 + MER106A DNA MER1_type 8 139 -97 185 216 0 59 chr12 17639971 17640022 -126146433 - L2 LINE L2 0 3313 3266 1609 188 15 18 chr12 17640022 17640352 -126146103 - MSTD LTR MaLR 0 396 68 1384 191 23 0 chr12 17640356 17640613 -126145842 + AluJb SINE Alu 6 268 -44 243 0 0 0 chr12 17640619 17640646 -126145809 + (CA)n Simple_repeat Simple_repeat 2 28 0 392 173 13 0 chr12 17640653 17640728 -126145727 - MSTD LTR MaLR -320 76 1 371 291 96 66 chr12 17640850 17640992 -126145463 - L1ME4a LINE L1 -294 5827 5691 2232 127 0 3 chr12 17640992 17641300 -126145155 - AluSx SINE Alu -5 307 1 371 291 96 66 chr12 17641300 17641490 -126144965 - L1ME4a LINE L1 -430 5691 5485 239 231 0 94 chr12 17642185 17642302 -126144153 - L1ME4a LINE L1 -2380 5428 5323 647 329 76 32 chr12 17643883 17644381 -126142074 - MLT1K LTR MaLR 0 588 69 286 321 164 19 chr12 17644933 17645201 -126141254 + L2 LINE L2 2167 2473 -841 656 272 126 60 chr12 17645307 17645770 -126140685 - L2 LINE L2 -31 3282 2751 2146 110 14 0 chr12 17645770 17646060 -126140395 + AluY SINE Alu 1 294 -17 656 272 126 60 chr12 17646060 17646158 -126140297 - L2 LINE L2 -562 2751 2661 1346 189 41 107 chr12 17646167 17646379 -126140076 + MLT1B LTR MaLR 1 175 -215 2272 199 22 113 chr12 17646379 17646554 -126139901 + LTR8 LTR ERV1 1 190 -501 2366 92 0 0 chr12 17646554 17646860 -126139595 - AluSx SINE Alu -6 306 1 2272 199 22 113 chr12 17646860 17647444 -126139011 + LTR8 LTR ERV1 190 691 0 1346 189 41 107 chr12 17647444 17647644 -126138811 + MLT1B LTR MaLR 175 386 -4 276 290 80 0 chr12 17647676 17647776 -126138679 - MLT1J2 LTR MaLR -65 385 278 3878 284 128 4 chr12 17649642 17651013 -126135442 - L2 LINE L2 -653 2661 1121 335 225 139 7 chr12 17651031 17651182 -126135273 - LTR50 LTR ERVL 0 795 625 560 211 193 6 chr12 17651225 17651386 -126135069 - LTR50 LTR ERVL -604 191 1 356 277 78 14 chr12 17651387 17651528 -126134927 - L2 LINE L2 -2207 1107 958 242 286 36 0 chr12 17651533 17651617 -126134838 - MER91C DNA MER1_type -53 87 1 270 85 0 0 chr12 17652550 17652597 -126133858 - L1MB4 LINE L1 0 6180 6134 278 301 55 48 chr12 17653456 17653602 -126132853 - L2 LINE L2 -69 3244 3098 904 67 0 8 chr12 17655584 17655703 -126130752 + L1PA16 LINE L1 6040 6157 -9 207 0 0 0 chr12 17657213 17657236 -126129219 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 262 259 0 0 chr12 17657239 17657293 -126129162 - L2 LINE L2 -33 3239 3186 398 313 98 0 chr12 17657475 17657638 -126128817 + MIR SINE MIR 9 187 -75 180 125 0 0 chr12 17657703 17657735 -126128720 + (CTATA)n Simple_repeat Simple_repeat 2 33 0 210 315 65 46 chr12 17658359 17658467 -126127988 - MIR SINE MIR -58 150 41 2334 105 0 3 chr12 17658811 17659117 -126127338 - AluSx SINE Alu -7 305 1 182 257 76 76 chr12 17659812 17659956 -126126499 - MER5B DNA MER1_type -5 173 30 433 264 49 28 chr12 17659989 17660133 -126126322 + MIR SINE MIR 7 153 -109 2631 219 91 30 chr12 17660141 17661781 -126124674 + L1ME2 LINE L1 4415 6170 0 338 291 19 0 chr12 17662703 17662806 -126123649 + L3 LINE CR1 1259 1363 -214 195 319 22 33 chr12 17662841 17662932 -126123523 - L3 LINE CR1 -110 1467 1378 586 272 130 0 chr12 17662969 17663153 -126123302 + MIR SINE MIR 50 257 -5 212 387 0 0 chr12 17663162 17663237 -126123218 + L3 LINE CR1 1471 1545 -32 203 356 0 0 chr12 17663644 17663703 -126122752 - L2 LINE L2 -10 3303 3245 1281 244 141 8 chr12 17663821 17664210 -126122245 - MLT1H LTR MaLR -103 446 6 383 331 53 0 chr12 17665677 17665810 -126120645 - MIR3 SINE MIR -38 170 31 26 0 0 0 chr12 17667191 17667217 -126119238 + AT_rich Low_complexity Low_complexity 1 26 0 379 323 63 21 chr12 17667847 17668036 -126118419 + MIR SINE MIR 22 218 -44 596 300 6 18 chr12 17669782 17669952 -126116503 - MER5A DNA MER1_type -21 168 1 968 260 41 8 chr12 17670230 17670472 -126115983 + MIR SINE MIR 13 262 0 891 223 33 33 chr12 17670979 17671194 -126115261 + MER20 DNA MER1_type 4 218 -1 222 118 0 0 chr12 17671821 17671855 -126114600 + (CA)n Simple_repeat Simple_repeat 2 35 0 204 239 73 12 chr12 17672559 17672682 -126113773 + MIR3 SINE MIR 47 205 -3 1848 144 0 14 chr12 17672760 17673038 -126113417 - AluJb SINE Alu -38 274 1 612 312 48 26 chr12 17674484 17674849 -126111606 + MLT1K LTR MaLR 17 422 -166 4058 206 34 59 chr12 17674902 17675967 -126110488 + MER45B DNA AcHobo 3 1040 0 1750 176 15 76 chr12 17675976 17676385 -126110070 - MLT1B LTR MaLR 0 390 7 272 242 11 55 chr12 17676392 17676483 -126109972 + MLT1K LTR MaLR 491 577 -11 23 0 0 0 chr12 17676659 17676682 -126109773 + AT_rich Low_complexity Low_complexity 1 23 0 296 245 118 0 chr12 17677775 17677877 -126108578 - MARNA DNA Mariner -38 548 435 276 333 49 0 chr12 17677794 17677896 -126108559 + MARNA DNA Mariner 64 170 -416 * 351 113 0 0 chr12 17678002 17678055 -126108400 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 252 279 184 14 chr12 17678071 17678218 -126108237 - MARNA DNA Mariner -336 250 79 342 80 0 0 chr12 17678244 17678294 -126108161 + (CA)n Simple_repeat Simple_repeat 2 51 0 209 239 0 0 chr12 17678916 17678962 -126107493 + L2 LINE L2 3224 3269 -3 183 304 98 11 chr12 17679263 17679355 -126107100 + L2 LINE L2 3151 3250 -22 1629 181 20 17 chr12 17679355 17679653 -126106802 - AluJo SINE Alu -10 302 4 220 250 36 0 chr12 17680278 17680334 -126106121 + CT-rich Low_complexity Low_complexity 3 60 0 1998 153 3 0 chr12 17680351 17680652 -126105803 - AluSx SINE Alu -10 302 1 1453 236 109 27 chr12 17681267 17681889 -126104566 - L1MC5 LINE L1 -53 7908 7236 2545 68 0 0 chr12 17682614 17682925 -126103530 - AluY SINE Alu 0 311 1 972 26 0 0 chr12 17683136 17683249 -126103206 - AluY SINE Alu -12 299 187 397 332 16 10 chr12 17683258 17683412 -126103043 - MIR SINE MIR -61 147 2 269 233 70 12 chr12 17683506 17683592 -126102863 - MER103 DNA DNA -49 117 27 398 289 56 21 chr12 17683654 17683796 -126102659 + MIR3 SINE MIR 30 176 -32 381 281 74 20 chr12 17683868 17684070 -126102385 + L2 LINE L2 2287 2499 -815 339 328 108 16 chr12 17684070 17684256 -126102199 + MIR SINE MIR 2 204 -58 256 384 53 0 chr12 17684282 17684488 -126101967 + L2 LINE L2 2511 2727 -587 708 273 13 70 chr12 17684693 17684993 -126101462 + MLT1G3 LTR MaLR 1 283 -247 342 214 0 0 chr12 17685021 17685105 -126101350 + (TG)n Simple_repeat Simple_repeat 2 85 0 201 147 0 0 chr12 17686501 17686535 -126099920 + (GA)n Simple_repeat Simple_repeat 2 35 0 608 335 29 0 chr12 17687227 17687436 -126099019 + MIR SINE MIR 27 241 -21 2215 97 37 0 chr12 17687498 17687797 -126098658 - AluSg SINE Alu 0 310 1 409 332 51 17 chr12 17688179 17688414 -126098041 + MIR SINE MIR 20 262 0 392 304 16 73 chr12 17690321 17690512 -126095943 - MER5A DNA MER1_type 0 189 10 485 257 46 57 chr12 17691991 17692166 -126094289 - MIR SINE MIR -88 174 2 423 257 114 9 chr12 17692202 17692307 -126094148 + L2 LINE L2 3198 3313 0 331 318 133 17 chr12 17693711 17693884 -126092571 + MIR SINE MIR 2 194 -68 204 163 0 0 chr12 17693945 17693988 -126092467 + CT-rich Low_complexity Low_complexity 2 44 0 230 312 78 0 chr12 17694256 17694333 -126092122 + L2 LINE L2 3191 3273 -40 491 284 56 19 chr12 17694524 17694686 -126091769 - MIR SINE MIR -48 214 47 305 329 148 0 chr12 17695307 17695462 -126090993 - MIR SINE MIR -6 256 79 585 0 0 0 chr12 17695482 17695547 -126090908 + (GA)n Simple_repeat Simple_repeat 1 65 0 189 250 0 109 chr12 17696385 17696449 -126090006 + MIR SINE MIR 26 82 -126 * 313 353 0 20 chr12 17696447 17696549 -126089906 + L2 LINE L2 3172 3271 -1 435 119 0 0 chr12 17696894 17696961 -126089494 + (TCTCTG)n Simple_repeat Simple_repeat 5 71 0 277 318 0 0 chr12 17697763 17697829 -126088626 + L2 LINE L2 3172 3237 -35 234 207 0 0 chr12 17698064 17698122 -126088333 + (TG)n Simple_repeat Simple_repeat 1 58 0 449 285 149 19 chr12 17699136 17699350 -126087105 + MIR SINE MIR 20 261 -1 240 296 102 9 chr12 17700095 17700203 -126086252 - MIR3 SINE MIR -10 198 81 1075 231 39 103 chr12 17700581 17701114 -126085341 + LTR53 LTR ERVL 21 519 0 410 219 78 23 chr12 17701318 17701446 -126085009 + L1MA4 LINE L1 6161 6295 -5 209 57 29 0 chr12 17701881 17701916 -126084539 + (TAA)n Simple_repeat Simple_repeat 2 37 0 374 327 76 39 chr12 17702288 17702685 -126083770 + L1ME LINE L1 2819 3236 -2910 5778 143 23 28 chr12 17702895 17703176 -126083279 + L1MA7 LINE L1 4591 4872 -1419 2348 109 19 24 chr12 17703176 17703552 -126082903 + THE1C LTR MaLR 1 374 -1 5778 143 23 28 chr12 17703552 17704974 -126081481 + L1MA7 LINE L1 4872 6289 -2 389 316 94 46 chr12 17705052 17705486 -126080969 + L1ME LINE L1 3761 4215 -1931 1812 133 71 17 chr12 17705877 17706171 -126080284 + AluSx SINE Alu 3 312 0 26 50 0 0 chr12 17706259 17706299 -126080156 + AT_rich Low_complexity Low_complexity 1 40 0 580 327 59 20 chr12 17706793 17707233 -126079222 + L1ME LINE L1 5311 5767 -354 213 39 0 0 chr12 17707235 17707261 -126079194 + (TA)n Simple_repeat Simple_repeat 2 27 0 312 310 0 0 chr12 17707272 17707359 -126079096 - L1MC4 LINE L1 -1335 6707 6621 497 287 67 20 chr12 17707874 17708069 -126078386 + MIR SINE MIR 53 256 -6 249 303 15 0 chr12 17708256 17708322 -126078133 - MIR SINE MIR -110 152 86 249 188 47 47 chr12 17708871 17708935 -126077520 + L2 LINE L2 3250 3313 0 435 358 66 56 chr12 17709228 17709344 -126077111 + L2 LINE L2 1146 1259 -2055 2373 74 3 23 chr12 17709344 17709654 -126076801 - AluSq SINE Alu -9 304 1 435 358 66 56 chr12 17709654 17710096 -126076359 + L2 LINE L2 1259 1713 -1601 1506 175 26 29 chr12 17710096 17710404 -126076051 + AluJo SINE Alu 6 312 0 435 358 66 56 chr12 17710404 17710419 -126076036 + L2 LINE L2 1713 1726 -1588 570 128 30 163 chr12 17710431 17710634 -126075821 - MER53 DNA DNA -13 176 1 1055 328 96 76 chr12 17710636 17711925 -126074530 + L2 LINE L2 1722 3034 -238 269 288 42 108 chr12 17712255 17712467 -126073988 - MIR SINE MIR -52 210 13 1479 312 122 30 chr12 17714109 17714961 -126071494 + L3 LINE CR1 325 1254 -323 321 291 93 0 chr12 17715042 17715128 -126071327 - MIR SINE MIR -168 94 1 258 206 206 27 chr12 17715143 17715216 -126071239 + L3 LINE CR1 1252 1337 -240 184 229 42 0 chr12 17715298 17715346 -126071109 + L3 LINE CR1 1523 1572 -5 289 278 143 23 chr12 17715757 17715890 -126070565 + MIR SINE MIR 65 213 -49 796 251 99 103 chr12 17715963 17716624 -126069831 + MER21B LTR ERV1 60 646 -217 2484 78 0 3 chr12 17716624 17716931 -126069524 + AluSc SINE Alu 1 306 -3 273 299 103 8 chr12 17717218 17717335 -126069120 - MIR SINE MIR -81 181 54 347 296 45 30 chr12 17717544 17717676 -126068779 + L2 LINE L2 3175 3308 -5 741 313 12 19 chr12 17719139 17719395 -126067060 + MIR SINE MIR 9 262 0 248 180 16 33 chr12 17719415 17719476 -126066979 - MIR SINE MIR -17 245 186 27 29 0 0 chr12 17719603 17719637 -126066818 + AT_rich Low_complexity Low_complexity 1 34 0 501 216 16 60 chr12 17719725 17719910 -126066545 + L1MC5 LINE L1 7711 7887 -74 349 208 75 33 chr12 17719926 17720046 -126066409 + L1ME4a LINE L1 5967 6091 -30 1983 182 6 0 chr12 17720106 17720452 -126066003 - MER7A DNA MER2_type 0 346 1 186 43 0 0 chr12 17720548 17720571 -126065884 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 989 275 17 42 chr12 17721854 17722207 -126064248 + L2 LINE L2 471 814 -2500 812 221 74 0 chr12 17722216 17722379 -126064076 + MER58A DNA MER1_type 1 175 -49 315 244 44 0 chr12 17722388 17722478 -126063977 + L2 LINE L2 819 912 -2402 312 316 17 26 chr12 17722492 17722609 -126063846 + L2 LINE L2 3197 3312 -1 917 302 163 15 chr12 17722864 17723612 -126062843 - L2 LINE L2 -1 3312 2455 339 86 0 52 chr12 17723751 17723809 -126062646 + MADE1 DNA Mariner 1 55 -25 598 285 132 21 chr12 17723811 17724046 -126062409 - MIR SINE MIR -1 261 1 256 314 42 2 chr12 17724180 17724300 -126062155 - MIR SINE MIR -66 142 28 26 30 0 0 chr12 17724830 17724863 -126061592 + AT_rich Low_complexity Low_complexity 1 33 0 2426 61 0 7 chr12 17725423 17725717 -126060738 - AluSc SINE Alu -17 292 1 5294 39 0 3 chr12 17726427 17727066 -126059389 - L1PA5 LINE L1 0 6154 5518 2754 35 14 0 chr12 17727066 17727514 -126058941 + L1PA5 LINE L1 5052 5503 -651 336 329 58 0 chr12 17727616 17727753 -126058702 + MIR SINE MIR 48 192 -70 1570 172 63 13 chr12 17727759 17728062 -126058393 + MER2 DNA MER2_type 13 330 -15 24 67 0 0 chr12 17728185 17728230 -126058225 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr12 17728849 17728879 -126057576 + AT_rich Low_complexity Low_complexity 1 30 0 278 327 71 9 chr12 17729053 17729166 -126057289 - L2 LINE L2 -8 3264 3145 935 327 73 37 chr12 17730176 17730248 -126056207 + L2 LINE L2 2459 2527 -745 2493 157 16 16 chr12 17730248 17730682 -126055773 + Tigger2a DNA MER2_type 1 434 0 935 327 73 37 chr12 17730682 17731131 -126055324 + L2 LINE L2 2527 3011 -261 420 20 0 0 chr12 17731337 17731386 -126055069 + (CA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr12 17731410 17731432 -126055023 + AT_rich Low_complexity Low_complexity 1 22 0 274 348 61 30 chr12 17731583 17731813 -126054642 - L2 LINE L2 -1527 1787 1551 21 36 0 0 chr12 17732300 17732328 -126054127 + AT_rich Low_complexity Low_complexity 1 28 0 2430 64 0 32 chr12 17732333 17732646 -126053809 + AluY SINE Alu 1 303 -8 999 285 157 70 chr12 17732948 17734335 -126052120 + HAL1 LINE L1 1 1508 -999 1974 161 0 0 chr12 17734335 17734729 -126051726 + AluSx SINE Alu 1 394 0 815 196 235 18 chr12 17734970 17735277 -126051178 - MER58D DNA MER1_type -15 371 1 608 253 148 0 chr12 17735420 17735582 -126050873 + MER5A DNA MER1_type 4 189 0 1134 234 47 44 chr12 17735677 17736041 -126050414 - MLT1A1 LTR MaLR 0 365 1 654 104 0 0 chr12 17736950 17737046 -126049409 + (TATATG)n Simple_repeat Simple_repeat 1 96 0 2481 58 0 10 chr12 17740047 17740355 -126046100 + AluY SINE Alu 1 305 -6 253 190 17 35 chr12 17740543 17740601 -126045854 - MIR SINE MIR 0 262 206 2483 69 0 3 chr12 17742511 17742814 -126043641 - AluY SINE Alu -9 302 1 320 247 177 48 chr12 17744131 17744317 -126042138 + MIR SINE MIR 47 256 -6 1297 196 69 45 chr12 17744716 17744897 -126041558 - MER58B DNA MER1_type -2080 340 146 2215 112 6 6 chr12 17744897 17745210 -126041245 - AluSp SINE Alu 0 313 1 1297 196 69 45 chr12 17745210 17745360 -126041095 - MER58B DNA MER1_type -2274 146 1 353 320 15 89 chr12 17745360 17745563 -126040892 + MIR3 SINE MIR 12 199 -9 25 31 0 0 chr12 17746884 17746916 -126039539 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr12 17747575 17747618 -126038837 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr12 17748407 17748430 -126038025 + AT_rich Low_complexity Low_complexity 1 23 0 940 214 124 10 chr12 17748586 17748876 -126037579 - MER5C DNA MER1_type -1 323 1 1008 299 138 47 chr12 17749066 17750186 -126036269 - L2 LINE L2 0 3272 2027 214 277 0 0 chr12 17751478 17751525 -126034930 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 265 353 43 9 chr12 17751770 17751886 -126034569 + MIR3 SINE MIR 9 128 -80 396 372 68 15 chr12 17752241 17752580 -126033875 + L1MC5 LINE L1 4785 5141 -1005 9889 200 31 33 chr12 17752771 17755291 -126031164 + L1MB2 LINE L1 2865 5388 -783 751 203 0 0 chr12 17755291 17755424 -126031031 + FLAM_C SINE Alu 1 133 0 9889 200 31 33 chr12 17755424 17756168 -126030287 + L1MB2 LINE L1 5388 6132 -39 1620 132 8 0 chr12 17756164 17756407 -126030048 - L1MA5A LINE L1 -409 5888 5644 * 2716 110 42 0 chr12 17756407 17756832 -126029623 + L1MA5A LINE L1 5847 6291 -6 303 95 0 79 chr12 17756889 17756952 -126029503 + L1MB2 LINE L1 6106 6163 -8 1688 249 25 23 chr12 17756952 17757470 -126028985 + L1MC5 LINE L1 5297 5815 -1993 1618 248 56 63 chr12 17757632 17758280 -126028175 + L1MC5 LINE L1 6823 7474 -487 2439 58 0 0 chr12 17758280 17758573 -126027882 + AluY SINE Alu 1 293 -18 1618 248 56 63 chr12 17758573 17758616 -126027839 + L1MC5 LINE L1 7474 7516 -445 360 0 0 0 chr12 17758616 17758656 -126027799 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 1618 248 56 63 chr12 17758656 17758799 -126027656 + L1MC5 LINE L1 7516 7652 -309 21 36 0 0 chr12 17758914 17758942 -126027513 + AT_rich Low_complexity Low_complexity 1 28 0 228 214 31 31 chr12 17759025 17759123 -126027332 + L1MC5 LINE L1 7827 7924 -37 599 137 145 34 chr12 17759822 17759939 -126026516 - MER58B DNA MER1_type 0 341 212 756 222 71 0 chr12 17760421 17760682 -126025773 - MLT1E1 LTR MaLR -398 256 1 229 135 0 0 chr12 17760684 17760721 -126025734 + (T)n Simple_repeat Simple_repeat 1 180 0 1378 159 4 26 chr12 17760721 17760954 -126025501 - AluJb SINE Alu 0 350 86 495 197 11 6 chr12 17760964 17761136 -126025319 + CT-rich Low_complexity Low_complexity 1 172 0 753 313 86 29 chr12 17761136 17761484 -126024971 - L2 LINE L2 -1884 1430 1063 688 243 55 93 chr12 17761787 17762153 -126024302 - L1MDa LINE L1 -6133 407 56 1598 254 50 7 chr12 17762178 17762744 -126023711 - L1M4 LINE L1 -810 5336 4747 2529 214 112 17 chr12 17762772 17763785 -126022670 - L1ME1 LINE L1 -5 6161 5053 279 291 39 19 chr12 17763785 17763888 -126022567 - MIR SINE MIR -63 145 41 486 287 50 95 chr12 17764306 17764347 -126022108 - L2 LINE L2 -407 2907 2866 2175 128 22 27 chr12 17764347 17764713 -126021742 + THE1B LTR MaLR 1 364 0 11999 89 5 1 chr12 17764713 17766287 -126020168 + THE1B-int LTR MaLR 1 1580 0 2257 128 19 27 chr12 17766287 17766654 -126019801 + THE1B LTR MaLR 1 364 0 486 287 50 95 chr12 17766654 17767011 -126019444 - L2 LINE L2 -445 2869 2525 1875 171 0 13 chr12 17767186 17767485 -126018970 - AluJo SINE Alu -17 295 1 22 35 0 0 chr12 17768704 17768733 -126017722 + AT_rich Low_complexity Low_complexity 1 29 0 228 194 31 102 chr12 17769303 17769401 -126017054 + CT-rich Low_complexity Low_complexity 5 95 0 1451 179 47 33 chr12 17769436 17769737 -126016718 - AluJb SINE Alu -7 305 1 1527 139 8 4 chr12 17769799 17770036 -126016419 + AluSx SINE Alu 2 239 -73 451 248 40 60 chr12 17770479 17770521 -126015934 - MER5A DNA MER1_type -1 188 147 1530 179 45 70 chr12 17770521 17770895 -126015560 + MLT1A1 LTR MaLR 1 365 0 451 248 40 60 chr12 17770895 17771001 -126015454 - MER5A DNA MER1_type -42 147 43 593 249 103 24 chr12 17771029 17771194 -126015261 + MER5B DNA MER1_type 1 178 0 472 240 23 39 chr12 17772341 17772470 -126013985 - MIR SINE MIR -114 148 22 189 229 0 0 chr12 17773262 17773310 -126013145 + GA-rich Low_complexity Low_complexity 4 51 0 486 268 114 23 chr12 17773777 17773997 -126012458 - MIR SINE MIR -2 260 21 196 339 32 0 chr12 17775333 17775395 -126011060 - MIR SINE MIR -76 132 69 22 0 0 0 chr12 17775432 17775454 -126011001 + AT_rich Low_complexity Low_complexity 1 22 0 290 228 59 10 chr12 17775474 17775575 -126010880 - L1ME4a LINE L1 -7 6114 6009 79 44 0 0 chr12 17775584 17775698 -126010757 + AT_rich Low_complexity Low_complexity 1 114 0 323 296 176 49 chr12 17775825 17776149 -126010306 - L1ME4a LINE L1 -392 5729 5365 547 284 100 26 chr12 17777579 17777850 -126008605 + L2 LINE L2 3016 3306 -7 209 270 43 61 chr12 17778012 17778127 -126008328 + L2 LINE L2 2359 2471 -843 21 0 0 0 chr12 17778782 17778803 -126007652 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 17778832 17778853 -126007602 + (CA)n Simple_repeat Simple_repeat 2 22 0 417 230 0 72 chr12 17780577 17780716 -126005739 + MER94 DNA DNA 6 134 0 2128 116 44 41 chr12 17780909 17781272 -126005183 - THE1B LTR MaLR 0 364 1 353 296 45 30 chr12 17783045 17783177 -126003278 - L2 LINE L2 -5 3308 3175 275 299 103 8 chr12 17783386 17783503 -126002952 + MIR SINE MIR 54 181 -81 2535 58 0 10 chr12 17783789 17784099 -126002356 - AluSc SINE Alu -2 307 1 5337 36 0 3 chr12 17784809 17785448 -126001007 - L1PA5 LINE L1 0 6154 5518 2620 38 13 2 chr12 17785448 17785898 -126000557 + L1PA5 LINE L1 5052 5503 -651 386 332 46 14 chr12 17786498 17786715 -125999740 - ERVL LTR ERVL -1119 4645 4422 1065 226 97 20 chr12 17786720 17787070 -125999385 - MLT1D LTR MaLR 0 505 129 1005 161 21 36 chr12 17787070 17787262 -125999193 - AluJb SINE Alu -16 296 108 471 187 7 29 chr12 17787329 17787468 -125998987 + CT-rich Low_complexity Low_complexity 1 136 0 753 313 86 29 chr12 17787468 17787816 -125998639 - L2 LINE L2 -1884 1430 1063 688 243 55 93 chr12 17788119 17788485 -125997970 - L1MDa LINE L1 -6133 407 56 1598 254 50 7 chr12 17788510 17789076 -125997379 - L1ME4a LINE L1 -810 5336 4747 435 234 24 0 chr12 17789090 17789214 -125997241 - L1MA10 LINE L1 0 6334 6208 2331 84 3 0 chr12 17789702 17790001 -125996454 + AluSx SINE Alu 1 300 -12 2315 103 0 0 chr12 17790212 17790522 -125995933 + AluSg SINE Alu 1 310 0 1161 218 70 32 chr12 17791305 17791806 -125994649 + L1MC5 LINE L1 7322 7841 -120 2370 73 0 0 chr12 17794360 17794663 -125991792 - AluY SINE Alu -8 303 1 1178 250 67 58 chr12 17794672 17795311 -125991144 - L1MC5 LINE L1 -494 7467 6823 22 35 0 0 chr12 17795776 17795805 -125990650 + AT_rich Low_complexity Low_complexity 1 29 0 241 308 10 29 chr12 17796373 17796477 -125989978 + CT-rich Low_complexity Low_complexity 2 103 0 1418 179 46 36 chr12 17796505 17796807 -125989648 - AluJb SINE Alu -7 305 1 1527 139 8 4 chr12 17796869 17797106 -125989349 + AluSx SINE Alu 2 239 -73 5599 124 3 3 chr12 17797616 17798469 -125987986 + THE1B-int LTR MaLR 728 1580 0 2257 128 19 27 chr12 17798469 17798836 -125987619 + THE1B LTR MaLR 1 364 0 184 71 71 24 chr12 17799205 17799247 -125987208 + (TTTAA)n Simple_repeat Simple_repeat 4 47 0 245 111 0 0 chr12 17799249 17799285 -125987170 + U2 snRNA snRNA 1 36 -152 327 85 0 0 chr12 17799646 17799693 -125986762 + (GA)n Simple_repeat Simple_repeat 2 48 0 182 342 129 13 chr12 17799725 17799880 -125986575 + L2 LINE L2 2312 2484 -830 2250 90 0 23 chr12 17799897 17800196 -125986259 + AluY SINE Alu 1 292 -19 209 200 0 0 chr12 17800294 17800334 -125986121 + (CAT)n Simple_repeat Simple_repeat 2 41 0 1827 77 8 0 chr12 17801388 17801647 -125984808 + THE1B-int LTR MaLR 1320 1580 0 2286 109 22 27 chr12 17801647 17802013 -125984442 + THE1B LTR MaLR 1 364 0 4541 94 12 5 chr12 17802013 17802681 -125983774 + THE1B-int LTR MaLR 1 673 -907 1303 163 32 0 chr12 17803229 17803481 -125982974 - L1PA16 LINE L1 -84 6082 5823 1160 130 0 0 chr12 17803481 17803643 -125982812 - AluSg/x SINE Alu -14 296 135 358 335 85 65 chr12 17804477 17804817 -125981638 + L2 LINE L2 2909 3255 -17 223 174 0 0 chr12 17804988 17805034 -125981421 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 183 293 107 27 chr12 17805536 17805611 -125980844 - L2 LINE L2 -460 2854 2774 2401 48 0 3 chr12 17805877 17806166 -125980289 - AluY SINE Alu -23 288 1 270 255 0 59 chr12 17806204 17806306 -125980149 + C-rich Low_complexity Low_complexity 2 97 0 267 269 0 0 chr12 17806320 17806450 -125980005 + C-rich Low_complexity Low_complexity 1 130 0 263 135 40 14 chr12 17806471 17806545 -125979910 + C-rich Low_complexity Low_complexity 4 79 0 1103 128 66 0 chr12 17806669 17806865 -125979590 - L1MA5A LINE L1 -242 6055 5847 3780 156 8 6 chr12 17806866 17807519 -125978936 + L1MA6 LINE L1 5647 6300 0 198 0 0 0 chr12 17808136 17808158 -125978297 + (A)n Simple_repeat Simple_repeat 1 22 0 2047 134 40 12 chr12 17809052 17809381 -125977074 - MER1B DNA MER1_type 0 339 2 588 267 20 0 chr12 17809703 17809853 -125976602 + MIR SINE MIR 12 164 -98 2028 206 39 15 chr12 17809854 17810374 -125976081 + L1 LINE L1 4284 4815 -1331 638 243 19 31 chr12 17812015 17812292 -125974163 - L1ME LINE L1 -690 5472 5197 3601 202 108 5 chr12 17812355 17813378 -125973077 - L1P4 LINE L1 -674 5492 4357 513 215 0 0 chr12 17813382 17813475 -125972980 + MLT1E2 LTR MaLR 526 618 -8 259 287 5 64 chr12 17813594 17813782 -125972673 + (CGGGG)n Simple_repeat Simple_repeat 3 179 0 2162 98 7 130 chr12 17814676 17815136 -125971319 - L1MA5 LINE L1 -2 6298 5896 30 27 0 0 chr12 17816099 17816136 -125970319 + GC_rich Low_complexity Low_complexity 1 37 0 401 229 11 29 chr12 17816145 17816320 -125970135 + C-rich Low_complexity Low_complexity 5 176 0 57 61 0 0 chr12 17816320 17816419 -125970036 + GC_rich Low_complexity Low_complexity 1 99 0 448 202 158 57 chr12 17816533 17816762 -125969693 + MLT1H1 LTR MaLR 339 588 -7 229 250 0 0 chr12 17816769 17816825 -125969630 + MIR SINE MIR 95 150 -112 1747 179 7 0 chr12 17817295 17817585 -125968870 - AluJb SINE Alu -20 292 1 3932 169 29 33 chr12 17819222 17820457 -125965998 - L1MA7 LINE L1 -180 6111 4876 2174 112 35 37 chr12 17820457 17820832 -125965623 - THE1C LTR MaLR -1 374 1 3932 169 29 33 chr12 17820832 17820844 -125965611 - L1MA7 LINE L1 -1415 4876 4865 210 314 42 2 chr12 17821700 17821820 -125964635 + MIR SINE MIR 28 150 -66 481 275 140 27 chr12 17821954 17822176 -125964279 + MIR SINE MIR 1 247 -15 203 283 66 0 chr12 17822392 17822498 -125963957 + L2 LINE L2 2449 2561 -753 243 88 0 0 chr12 17823514 17823548 -125962907 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 207 256 23 12 chr12 17824056 17824142 -125962313 + CT-rich Low_complexity Low_complexity 4 90 0 313 320 8 16 chr12 17824241 17824369 -125962086 + CT-rich Low_complexity Low_complexity 2 128 0 1085 274 47 40 chr12 17825265 17825697 -125960758 - MLT1K LTR MaLR -26 562 58 222 222 0 28 chr12 17826481 17826553 -125959902 + C-rich Low_complexity Low_complexity 5 74 0 376 257 114 9 chr12 17826955 17827060 -125959395 - L2 LINE L2 0 3313 3198 354 297 28 41 chr12 17827096 17827241 -125959214 + MIR SINE MIR 2 144 -118 339 169 0 0 chr12 17827371 17827442 -125959013 + C-rich Low_complexity Low_complexity 1 71 0 200 86 29 0 chr12 17827483 17827518 -125958937 + (CCCCCA)n Simple_repeat Simple_repeat 4 39 0 241 241 11 23 chr12 17827530 17827617 -125958838 + C-rich Low_complexity Low_complexity 1 86 0 291 301 0 0 chr12 17827708 17827801 -125958654 + C-rich Low_complexity Low_complexity 1 93 0 2210 135 3 35 chr12 17830208 17830556 -125955899 + MER1B DNA MER1_type 1 337 0 597 212 55 20 chr12 17830579 17830725 -125955730 - MLT1K LTR MaLR -81 507 357 225 229 0 0 chr12 17832266 17832314 -125954141 + L1ME LINE L1 5539 5586 -535 277 194 65 16 chr12 17832351 17832413 -125954042 + MLT1I LTR MaLR 345 409 0 2002 150 186 42 chr12 17832521 17832968 -125953487 - MLT2B2 LTR ERVL 0 515 5 208 381 57 6 chr12 17834048 17834224 -125952231 + L2 LINE L2 3005 3189 -124 468 213 0 0 chr12 17834547 17834674 -125951781 + C-rich Low_complexity Low_complexity 1 127 0 206 271 4 38 chr12 17834749 17835029 -125951426 + C-rich Low_complexity Low_complexity 1 270 0 218 215 7 67 chr12 17835538 17835687 -125950768 + (TGGG)n Simple_repeat Simple_repeat 3 142 0 294 158 22 29 chr12 17836015 17836154 -125950301 + G-rich Low_complexity Low_complexity 3 140 0 232 340 32 0 chr12 17838085 17838179 -125948276 - MER5A DNA MER1_type -3 186 90 35 88 0 0 chr12 17839210 17839301 -125947154 + GC_rich Low_complexity Low_complexity 1 91 0 25 0 0 0 chr12 17839313 17839338 -125947117 + GC_rich Low_complexity Low_complexity 1 25 0 267 297 68 25 chr12 17840063 17840181 -125946274 + MER117 DNA MER1_type 33 155 -42 272 337 20 0 chr12 17840538 17840636 -125945819 - L2 LINE L2 -10 3262 3163 399 284 0 49 chr12 17841075 17841258 -125945197 + CT-rich Low_complexity Low_complexity 3 176 0 21 0 0 0 chr12 17842218 17842239 -125944216 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 17842944 17842968 -125943487 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr12 17843390 17843421 -125943034 + AT_rich Low_complexity Low_complexity 1 31 0 318 50 0 0 chr12 17846329 17846369 -125940086 + (A)n Simple_repeat Simple_repeat 1 40 0 261 231 11 22 chr12 17847707 17847798 -125938657 + (TA)n Simple_repeat Simple_repeat 2 91 0 319 255 0 20 chr12 17847992 17848090 -125938365 - MIR3 SINE MIR -23 185 90 21 0 0 0 chr12 17849873 17849894 -125936561 + AT_rich Low_complexity Low_complexity 1 21 0 180 228 0 0 chr12 17852576 17852633 -125933822 + CT-rich Low_complexity Low_complexity 3 59 0 262 180 0 49 chr12 17854156 17854217 -125932238 + MER4-int LTR ERV1 1101 1158 -5440 356 71 18 0 chr12 17854741 17854797 -125931658 + (GA)n Simple_repeat Simple_repeat 1 57 0 25 0 0 0 chr12 17855950 17855975 -125930480 + AT_rich Low_complexity Low_complexity 1 25 0 232 333 63 40 chr12 17859968 17860094 -125926361 + L2 LINE L2 3136 3264 -8 561 167 8 56 chr12 17860232 17860358 -125926097 + AluSg/x SINE Alu 137 256 -56 192 40 0 0 chr12 17860416 17860441 -125926014 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 211 191 106 0 chr12 17860573 17860620 -125925835 + L2 LINE L2 3218 3269 -3 315 358 89 57 chr12 17862068 17862719 -125923736 + HAL1b LINE L1 26 697 -651 1475 188 117 0 chr12 17862959 17863267 -125923188 - MER2 DNA MER2_type 0 344 1 199 365 113 25 chr12 17863341 17863500 -125922955 - MIR SINE MIR -68 194 22 1251 234 8 86 chr12 17863845 17864322 -125922133 - L1MD3 LINE L1 0 8037 7613 200 170 38 19 chr12 17864644 17864697 -125921758 + GA-rich Low_complexity Low_complexity 2 55 0 249 307 73 49 chr12 17865911 17866118 -125920337 - MLT1G1 LTR MaLR -313 229 20 197 358 42 17 chr12 17866469 17866589 -125919866 + MIR3 SINE MIR 69 191 -17 699 258 58 11 chr12 17867644 17867834 -125918621 + MER3 DNA MER1_type 2 200 -9 223 336 61 30 chr12 17868106 17868237 -125918218 + L2 LINE L2 3179 3313 0 236 157 0 78 chr12 17868970 17869021 -125917434 + MIR3 SINE MIR 154 200 -8 462 289 103 47 chr12 17870254 17870486 -125915969 - MIR SINE MIR -5 257 13 28 61 0 0 chr12 17871578 17871627 -125914828 + AT_rich Low_complexity Low_complexity 1 49 0 1183 179 0 0 chr12 17871628 17871829 -125914626 - AluJo SINE Alu -27 285 85 180 183 56 99 chr12 17871964 17872035 -125914420 + MIR SINE MIR 145 212 -50 27 29 0 0 chr12 17873010 17873044 -125913411 + AT_rich Low_complexity Low_complexity 1 34 0 22 80 0 0 chr12 17873376 17873426 -125913029 + AT_rich Low_complexity Low_complexity 1 50 0 2219 75 0 0 chr12 17873453 17873751 -125912704 + AluY SINE Alu 15 312 0 1548 142 34 4 chr12 17874571 17874804 -125911651 + AluSx SINE Alu 3 242 -70 654 37 0 0 chr12 17874845 17874926 -125911529 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 1619 174 0 0 chr12 17875158 17875434 -125911021 + AluSx SINE Alu 1 276 -36 183 80 0 0 chr12 17875436 17875461 -125910994 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 211 385 68 7 chr12 17875889 17876037 -125910418 - MIR SINE MIR -55 207 51 321 89 0 0 chr12 17876897 17876942 -125909513 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2178 132 0 0 chr12 17877091 17877401 -125909054 - AluSx SINE Alu -2 310 1 504 85 51 0 chr12 17877940 17878058 -125908397 + (TA)n Simple_repeat Simple_repeat 1 124 0 1493 223 7 3 chr12 17878058 17878350 -125908105 - AluJo SINE Alu -19 293 1 23 33 0 0 chr12 17878896 17878926 -125907529 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 17879723 17879744 -125906711 + AT_rich Low_complexity Low_complexity 1 21 0 22 88 0 0 chr12 17880395 17880452 -125906003 + AT_rich Low_complexity Low_complexity 1 57 0 389 276 20 0 chr12 17881437 17881535 -125904920 - MER58B DNA MER1_type -4 337 238 230 306 108 13 chr12 17881648 17881805 -125904650 + MIR3 SINE MIR 23 194 -14 231 248 26 34 chr12 17881829 17881946 -125904509 - L1MC4 LINE L1 -1314 6728 6613 197 171 45 0 chr12 17881953 17882041 -125904414 + (TA)n Simple_repeat Simple_repeat 1 92 0 299 202 9 0 chr12 17882069 17882178 -125904277 + (TA)n Simple_repeat Simple_repeat 1 110 0 270 148 0 131 chr12 17882178 17882239 -125904216 - AluJo SINE Alu -15 287 235 821 198 0 70 chr12 17882239 17882411 -125904044 - AluJo SINE Alu -152 160 1 1921 98 83 14 chr12 17883219 17883496 -125902959 + AluSq SINE Alu 1 296 -17 2067 92 20 26 chr12 17885032 17885338 -125901117 - AluSq SINE Alu -9 304 1 2519 83 11 51 chr12 17885378 17885586 -125900869 - THE1B LTR MaLR -4 360 172 2372 80 0 3 chr12 17885586 17885898 -125900557 + AluY SINE Alu 1 311 0 2519 83 11 51 chr12 17885898 17886064 -125900391 - THE1B LTR MaLR -192 172 1 9547 105 35 60 chr12 17886064 17886142 -125900313 - THE1B-int LTR MaLR 0 1580 1502 2123 101 7 10 chr12 17886142 17886440 -125900015 - AluSg SINE Alu -13 297 1 9547 105 35 60 chr12 17886440 17887981 -125898474 - THE1B-int LTR MaLR -78 1502 1 1341 140 103 120 chr12 17887981 17888249 -125898206 - THE1B LTR MaLR 0 364 176 1873 144 3 17 chr12 17888249 17888541 -125897914 - AluSx SINE Alu -24 288 1 1341 140 103 120 chr12 17888541 17888715 -125897740 - THE1B LTR MaLR -188 176 1 819 203 28 6 chr12 17889311 17889488 -125896967 - MER20 DNA MER1_type -2 217 37 190 395 0 0 chr12 17889920 17889996 -125896459 + L2 LINE L2 3007 3082 -190 370 316 52 16 chr12 17890067 17890260 -125896195 - HAL1b LINE L1 -1063 285 86 25 0 0 0 chr12 17890489 17890514 -125895941 + AT_rich Low_complexity Low_complexity 1 25 0 237 297 0 14 chr12 17890695 17890769 -125895686 + T-rich Low_complexity Low_complexity 2 74 0 1001 225 59 74 chr12 17891284 17891675 -125894780 - L1ME1 LINE L1 0 6178 5790 2081 276 54 24 chr12 17891742 17892495 -125893960 - L1MEc LINE L1 -5528 868 93 302 257 14 0 chr12 17892858 17892932 -125893523 + GA-rich Low_complexity Low_complexity 4 78 0 2215 121 0 6 chr12 17893368 17893681 -125892774 - AluSq SINE Alu 0 313 3 806 162 7 0 chr12 17894197 17894333 -125892122 - MLT1D LTR MaLR 0 505 369 4152 276 47 35 chr12 17894340 17895071 -125891384 + L1MC2 LINE L1 1535 2256 -3959 351 0 0 0 chr12 17895071 17895110 -125891345 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1638 168 11 4 chr12 17895113 17895393 -125891062 - AluSx SINE Alu -30 282 1 4152 276 47 35 chr12 17895393 17895474 -125890981 + L1MC2 LINE L1 2257 2336 -3879 1731 78 42 95 chr12 17895474 17895757 -125890698 + AluY SINE Alu 1 268 -43 210 37 0 0 chr12 17895761 17895788 -125890667 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4152 276 47 35 chr12 17895788 17897904 -125888551 + L1MC2 LINE L1 2338 4501 -1714 2618 169 7 2 chr12 17897904 17898330 -125888125 - MSTA LTR MaLR 0 428 1 4152 276 47 35 chr12 17898330 17898497 -125887958 + L1MC2 LINE L1 4501 4665 -1550 * 5041 128 27 23 chr12 17898492 17899333 -125887122 - L1PA13 LINE L1 -1 6162 5318 17810 179 18 7 chr12 17899336 17902239 -125884216 - L1PA13 LINE L1 -11 7590 4721 2023 128 75 20 chr12 17902239 17902584 -125883871 - THE1B LTR MaLR 0 364 1 17810 179 18 7 chr12 17902584 17905371 -125881084 - L1PA13 LINE L1 -2880 4721 1832 477 193 29 43 chr12 17905371 17905511 -125880944 + L1MC2 LINE L1 4649 4786 -1429 2142 124 0 0 chr12 17905512 17905803 -125880652 + AluSc SINE Alu 1 291 -18 2685 208 40 13 chr12 17905808 17906733 -125879722 + L1MEc LINE L1 4751 5698 -753 521 259 0 7 chr12 17906736 17906875 -125879580 + L1MC2 LINE L1 4781 4918 -1297 3052 204 35 11 chr12 17906882 17907577 -125878878 + L1MC2 LINE L1 5701 6411 -2 527 239 62 8 chr12 17907579 17907709 -125878746 - MLT1D LTR MaLR -121 384 248 778 53 53 24 chr12 17908853 17909022 -125877433 + (TCTA)n Simple_repeat Simple_repeat 3 176 0 1836 104 4 0 chr12 17909653 17909894 -125876561 + AluSp SINE Alu 1 242 -71 1770 147 0 18 chr12 17909896 17910181 -125876274 + AluSx SINE Alu 26 305 -7 637 310 67 64 chr12 17910546 17910875 -125875580 - L2 LINE L2 -411 2903 2574 567 224 32 78 chr12 17910973 17911192 -125875263 + L1MC5 LINE L1 7297 7505 -456 501 261 59 0 chr12 17911192 17911311 -125875144 + MER20 DNA MER1_type 1 126 -93 252 200 92 15 chr12 17911369 17911434 -125875021 + MER20 DNA MER1_type 146 215 -4 953 229 127 14 chr12 17911436 17911799 -125874656 + L1MC5 LINE L1 7498 7901 -60 21 36 0 0 chr12 17912003 17912031 -125874424 + AT_rich Low_complexity Low_complexity 1 28 0 228 355 26 16 chr12 17912133 17912322 -125874133 - L1ME LINE L1 -454 5667 5477 21 0 0 0 chr12 17912357 17912378 -125874077 + AT_rich Low_complexity Low_complexity 1 21 0 1285 147 14 14 chr12 17912454 17912665 -125873790 + AluSg/x SINE Alu 75 314 0 207 0 69 0 chr12 17912665 17912694 -125873761 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 238 321 47 9 chr12 17912717 17912929 -125873526 - L1ME LINE L1 -1549 4597 4378 21 0 0 0 chr12 17916120 17916141 -125870314 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr12 17917547 17917596 -125868859 + AT_rich Low_complexity Low_complexity 1 49 0 377 323 38 15 chr12 17917932 17918065 -125868390 - L3b LINE CR1 -23 1560 1425 379 271 151 55 chr12 17918385 17918603 -125867852 - Charlie8 DNA MER1_type -415 2002 1764 35 54 0 0 chr12 17918897 17918953 -125867502 + AT_rich Low_complexity Low_complexity 1 56 0 3217 286 122 37 chr12 17919113 17920866 -125865589 - Charlie8 DNA MER1_type -341 2076 176 252 0 0 0 chr12 17921006 17921034 -125865421 + (T)n Simple_repeat Simple_repeat 1 28 0 332 220 110 9 chr12 17921251 17921360 -125865095 + MIR SINE MIR 86 205 -57 3786 157 16 3 chr12 17921391 17922060 -125864395 - L1MC1 LINE L1 -6 6327 5650 2450 251 12 25 chr12 17922060 17922812 -125863643 - L1MC1 LINE L1 -985 5161 4420 21 0 0 0 chr12 17922847 17922868 -125863587 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr12 17923018 17923064 -125863391 + AT_rich Low_complexity Low_complexity 1 46 0 402 329 50 6 chr12 17923090 17923251 -125863204 + MIR SINE MIR 23 190 -72 412 255 97 36 chr12 17923363 17923610 -125862845 - L1ME4a LINE L1 -5 6116 5855 560 128 0 0 chr12 17924047 17924133 -125862322 + L1MC1 LINE L1 5894 5979 -354 646 268 169 6 chr12 17925849 17926032 -125860423 - MIR SINE MIR 0 262 50 22 0 0 0 chr12 17927592 17927614 -125858841 + AT_rich Low_complexity Low_complexity 1 22 0 1467 158 142 3 chr12 17927860 17928177 -125858278 - MER46B DNA MER2_type 0 236 1 1384 120 33 49 chr12 17928183 17928432 -125858023 + L1MC1 LINE L1 5935 6178 -155 414 127 89 0 chr12 17928445 17928524 -125857931 + L1MC1 LINE L1 6231 6316 -17 3070 273 78 102 chr12 17928545 17928647 -125857808 + L2 LINE L2 1360 1463 -1851 1722 199 64 0 chr12 17928647 17928989 -125857466 + MLT1A1 LTR MaLR 1 364 -1 3070 273 78 102 chr12 17928989 17929703 -125856752 + L2 LINE L2 1463 2192 -1122 597 219 9 0 chr12 17929703 17929808 -125856647 - FLAM_A SINE Alu -29 113 8 3070 273 78 102 chr12 17929808 17930521 -125855934 + L2 LINE L2 2192 2955 -359 24 53 0 0 chr12 17931687 17931725 -125854730 + AT_rich Low_complexity Low_complexity 1 38 0 214 238 0 0 chr12 17932011 17932053 -125854402 + CT-rich Low_complexity Low_complexity 3 44 0 205 283 0 0 chr12 17932829 17932875 -125853580 - L2 LINE L2 -6 3307 3262 1780 148 3 40 chr12 17932950 17933254 -125853201 + AluJb SINE Alu 1 293 -19 26 0 0 0 chr12 17933258 17933284 -125853171 + AT_rich Low_complexity Low_complexity 1 26 0 2029 208 0 3 chr12 17933289 17933655 -125852800 - MLT1A1 LTR MaLR 0 365 1 23 33 0 0 chr12 17935163 17935193 -125851262 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr12 17935234 17935257 -125851198 + AT_rich Low_complexity Low_complexity 1 23 0 238 275 114 12 chr12 17935491 17935590 -125850865 + MIR SINE MIR 45 153 -55 411 65 26 39 chr12 17935814 17935891 -125850564 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 212 129 0 0 chr12 17935891 17935922 -125850533 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 1942 161 0 0 chr12 17935926 17936224 -125850231 - AluSx SINE Alu -14 298 1 213 132 0 0 chr12 17936671 17936709 -125849746 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 976 253 64 4 chr12 17937029 17937262 -125849193 - MIR SINE MIR -5 257 11 407 269 70 108 chr12 17937631 17938047 -125848408 + MLT1K LTR MaLR 69 468 -120 552 322 99 61 chr12 17938061 17938486 -125847969 + L2 LINE L2 2873 3313 0 8763 202 28 33 chr12 17938687 17941508 -125844947 + L1MA6 LINE L1 3371 6173 -127 535 187 8 8 chr12 17941515 17941638 -125844817 + GA-rich Low_complexity Low_complexity 2 124 0 784 152 0 0 chr12 17941667 17941799 -125844656 + L1MA9 LINE L1 6179 6310 -2 22 0 0 0 chr12 17941827 17941849 -125844606 + AT_rich Low_complexity Low_complexity 1 22 0 1823 201 31 10 chr12 17942033 17942421 -125844034 + MSTD LTR MaLR 1 396 0 5690 242 114 26 chr12 17942423 17944013 -125842442 + MSTD-int LTR MaLR 2 1731 -4 2007 208 8 8 chr12 17944017 17944411 -125842044 + MSTD LTR MaLR 1 394 -2 199 360 142 40 chr12 17944747 17945227 -125841228 - L2 LINE L2 -565 2749 2221 1316 163 51 12 chr12 17945243 17945500 -125840955 - ORSL DNA AcHobo 0 275 9 2220 88 10 0 chr12 17946902 17947198 -125839257 - AluSq SINE Alu -14 299 1 191 350 169 38 chr12 17947631 17948325 -125838130 - L2 LINE L2 -1215 2099 1315 834 258 65 9 chr12 17948714 17948943 -125837512 - MIR SINE MIR 0 262 21 28 29 0 0 chr12 17950365 17950400 -125836055 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr12 17950593 17950617 -125835838 + AT_rich Low_complexity Low_complexity 1 24 0 266 266 117 8 chr12 17950620 17950748 -125835707 - L1ME4a LINE L1 -3 6118 5977 1978 149 3 0 chr12 17950996 17951292 -125835163 + AluSq SINE Alu 3 299 -14 548 306 43 47 chr12 17951308 17951566 -125834889 - MLT1I LTR MaLR -82 327 71 430 139 0 0 chr12 17951674 17951746 -125834709 + L1MA4A LINE L1 6209 6280 -23 24 32 0 0 chr12 17951842 17951873 -125834582 + AT_rich Low_complexity Low_complexity 1 31 0 307 359 75 46 chr12 17952096 17952587 -125833868 + L2 LINE L2 2722 3224 -48 22 0 0 0 chr12 17953194 17953216 -125833239 + AT_rich Low_complexity Low_complexity 1 22 0 15253 28 3 2 chr12 17953227 17955079 -125831376 - L1PA2 LINE L1 -1520 4626 2772 7843 13 0 0 chr12 17955079 17956631 -125829824 + L1PA2 LINE L1 4604 6155 0 25 51 0 0 chr12 17956910 17956949 -125829506 + AT_rich Low_complexity Low_complexity 1 39 0 414 252 42 17 chr12 17958174 17958293 -125828162 - MIR SINE MIR -94 168 47 400 351 109 9 chr12 17958570 17958803 -125827652 + MIR SINE MIR 3 256 -6 2314 40 4 0 chr12 17958940 17959251 -125827204 - AluY SINE Alu 0 320 9 229 342 0 13 chr12 17959577 17959653 -125826802 + L2 LINE L2 2625 2699 -615 217 250 0 0 chr12 17959830 17959878 -125826577 + L2 LINE L2 3261 3308 -5 2257 88 0 0 chr12 17960263 17960560 -125825895 - AluY SINE Alu -10 301 5 589 306 58 21 chr12 17961562 17961804 -125824651 - MIR SINE MIR 0 262 12 565 283 64 60 chr12 17966137 17966370 -125820085 - MIR SINE MIR 0 262 29 4014 168 62 50 chr12 17966890 17967403 -125819052 + MER4D LTR ERV1 1 530 -373 2087 109 0 82 chr12 17967403 17967743 -125818712 + AluSx SINE Alu 1 312 0 4014 168 62 50 chr12 17967743 17968122 -125818333 + MER4D LTR ERV1 530 903 0 250 325 153 16 chr12 17968317 17968572 -125817883 - L2 LINE L2 -779 2535 2246 759 333 125 15 chr12 17968814 17969730 -125816725 - L2 LINE L2 -23 3290 2277 515 16 16 0 chr12 17969840 17969904 -125816551 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 191 288 61 0 chr12 17970579 17970645 -125815810 - L2 LINE L2 -959 2355 2286 197 328 69 0 chr12 17971387 17971445 -125815010 + L2 LINE L2 3194 3255 -17 183 148 0 0 chr12 17971806 17971833 -125814622 + L2 LINE L2 3267 3293 -20 834 39 0 0 chr12 17972396 17972498 -125813957 + (TTCC)n Simple_repeat Simple_repeat 1 102 0 347 290 60 10 chr12 17973053 17973153 -125813302 - L2 LINE L2 -21 3251 3147 838 300 48 31 chr12 17973271 17973624 -125812831 + L2 LINE L2 2955 3313 0 21 0 0 0 chr12 17974251 17974272 -125812183 + AT_rich Low_complexity Low_complexity 1 21 0 665 289 27 51 chr12 17974800 17975056 -125811399 + MIR SINE MIR 13 262 0 206 116 23 0 chr12 17975345 17975388 -125811067 + A-rich Low_complexity Low_complexity 2 45 0 1985 115 0 4 chr12 17975402 17975680 -125810775 - AluSx SINE Alu -25 287 11 2194 202 131 24 chr12 17976376 17977080 -125809375 + LTR1B LTR ERV1 1 826 0 24 0 0 0 chr12 17977263 17977287 -125809168 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr12 17977430 17977457 -125808998 + (CA)n Simple_repeat Simple_repeat 2 28 0 826 169 49 0 chr12 17978080 17978222 -125808233 + MSTB1 LTR MaLR 4 152 -274 1412 158 54 0 chr12 17978520 17978761 -125807694 + MSTB1 LTR MaLR 157 410 -22 217 188 21 42 chr12 17979051 17979099 -125807356 + MIR SINE MIR 110 151 -57 213 302 143 8 chr12 17979309 17979435 -125807020 + MIR SINE MIR 96 238 -24 256 57 0 75 chr12 17979586 17979639 -125806816 + (GAAAA)n Simple_repeat Simple_repeat 3 51 0 2235 48 0 0 chr12 17979835 17980106 -125806349 - L1PA5 LINE L1 -498 5656 5386 3987 47 0 2 chr12 17980106 17980597 -125805858 + L1PA5 LINE L1 5661 6151 -3 217 193 52 46 chr12 17981485 17981587 -125804868 - L2 LINE L2 -274 3039 2937 194 298 0 0 chr12 17981702 17981749 -125804706 + L2 LINE L2 3234 3280 -33 571 332 45 4 chr12 17981762 17982009 -125804446 + MIR SINE MIR 2 258 -4 251 308 0 0 chr12 17982083 17982148 -125804307 + MLT1J LTR MaLR 103 167 -344 3388 128 35 2 chr12 17982276 17982786 -125803669 + MER1A DNA MER1_type 1 527 0 202 332 190 17 chr12 17983148 17983500 -125802955 - L2 LINE L2 -613 2701 2289 273 197 0 0 chr12 17983506 17983572 -125802883 + (CAT)n Simple_repeat Simple_repeat 3 68 0 240 309 175 0 chr12 17983811 17983908 -125802547 + MIR SINE MIR 59 172 -90 432 273 61 23 chr12 17987096 17987228 -125799227 - MIR SINE MIR -87 175 39 234 105 0 0 chr12 17987610 17987648 -125798807 + (T)n Simple_repeat Simple_repeat 1 38 0 967 301 91 9 chr12 17992581 17993023 -125793432 - L2 LINE L2 0 3313 2836 21 36 0 0 chr12 17994690 17994718 -125791737 + AT_rich Low_complexity Low_complexity 1 28 0 195 340 58 0 chr12 17995105 17995208 -125791247 + MIR SINE MIR 39 147 -115 183 305 116 66 chr12 17995309 17995568 -125790887 + L3b LINE CR1 1163 1434 -149 28 71 0 0 chr12 17995933 17995989 -125790466 + AT_rich Low_complexity Low_complexity 1 56 0 431 286 101 30 chr12 17999025 17999193 -125787262 - Charlie8 DNA MER1_type -2162 255 76 241 323 74 117 chr12 17999698 18000048 -125786407 + L2 LINE L2 254 588 -2726 419 360 118 28 chr12 18000585 18001125 -125785330 + L2 LINE L2 1465 2104 -1210 2241 103 3 0 chr12 18001125 18001426 -125785029 - AluSx SINE Alu -10 302 1 419 360 118 28 chr12 18001426 18001701 -125784754 + L2 LINE L2 2104 2353 -961 475 328 86 14 chr12 18001741 18002253 -125784202 + L1M4 LINE L1 3666 4214 -1932 401 306 0 9 chr12 18002619 18002730 -125783725 - L2 LINE L2 -14 3299 3190 505 282 87 29 chr12 18002763 18002969 -125783486 - MIR SINE MIR -44 218 1 363 282 105 24 chr12 18003359 18003568 -125782887 - L1ME4a LINE L1 -17 6104 5879 364 290 101 32 chr12 18003604 18003924 -125782531 - L1MC4 LINE L1 -293 7749 7312 759 160 0 15 chr12 18003927 18004058 -125782397 + FLAM_A SINE Alu 1 129 -4 230 321 89 12 chr12 18004108 18004276 -125782179 - L1MC4a LINE L1 -458 7350 7170 269 268 89 48 chr12 18004306 18004474 -125781981 - L1MC5 LINE L1 -738 7223 7049 2095 106 0 0 chr12 18005332 18005656 -125780799 - AluSx SINE Alu 0 324 1 464 156 0 21 chr12 18006203 18006299 -125780156 - MER53 DNA DNA -2 187 94 194 178 44 0 chr12 18006418 18006463 -125779992 - L2 LINE L2 -551 2763 2717 252 266 63 91 chr12 18006540 18006683 -125779772 + L2 LINE L2 3159 3297 -16 756 242 41 5 chr12 18008516 18008710 -125777745 + MIR SINE MIR 61 261 -1 264 295 58 98 chr12 18009248 18009421 -125777034 + MIR SINE MIR 21 143 -65 206 102 85 0 chr12 18011466 18011525 -125774930 + (TA)n Simple_repeat Simple_repeat 1 64 0 198 0 0 0 chr12 18011830 18011852 -125774603 + (A)n Simple_repeat Simple_repeat 1 22 0 334 270 63 8 chr12 18012563 18012689 -125773766 + MER94 DNA DNA 1 133 -1 21 0 0 0 chr12 18013094 18013115 -125773340 + AT_rich Low_complexity Low_complexity 1 21 0 720 12 0 0 chr12 18013149 18013233 -125773222 - L1PA3 LINE L1 -4 6151 6068 210 333 56 0 chr12 18014905 18014977 -125771478 + MIR3 SINE MIR 14 89 -119 1145 177 67 41 chr12 18015402 18015718 -125770737 - MER33 DNA MER1_type 0 324 1 1679 112 0 5 chr12 18016963 18017218 -125769237 - AluSq SINE Alu 0 315 62 4175 132 24 28 chr12 18017637 18018151 -125768304 - L1MA6 LINE L1 -5 6295 5784 513 0 0 0 chr12 18018151 18018208 -125768247 + (TA)n Simple_repeat Simple_repeat 2 58 0 4175 132 24 28 chr12 18018208 18018476 -125767979 - L1MA6 LINE L1 -516 5784 5516 1386 219 4 14 chr12 18019105 18019383 -125767072 + AluJo SINE Alu 3 277 -35 22 0 0 0 chr12 18022108 18022130 -125764325 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr12 18024162 18024198 -125762257 + AT_rich Low_complexity Low_complexity 1 36 0 1734 150 7 36 chr12 18024212 18024519 -125761936 - AluJo SINE Alu -10 302 5 588 296 6 45 chr12 18024644 18024820 -125761635 + MIR3 SINE MIR 15 183 -25 454 284 103 58 chr12 18025135 18025378 -125761077 + MIR SINE MIR 5 258 -4 233 261 53 63 chr12 18025832 18026131 -125760324 - L1ME4a LINE L1 -4 6117 5822 379 342 41 22 chr12 18026281 18026486 -125759969 + MIR SINE MIR 16 218 -44 376 296 103 65 chr12 18026666 18026957 -125759498 - L1ME4a LINE L1 -504 5617 5316 188 327 45 112 chr12 18028094 18028541 -125757914 - L2 LINE L2 -44 3228 2812 741 230 40 50 chr12 18029056 18029230 -125757225 - MIR SINE MIR -36 226 53 1582 54 0 27 chr12 18029230 18029454 -125757001 + AluY SINE Alu 1 218 -93 741 230 40 50 chr12 18029454 18029479 -125756976 - MIR SINE MIR -209 53 29 299 348 64 42 chr12 18030878 18031114 -125755341 + MIR SINE MIR 19 259 -3 235 217 0 0 chr12 18036538 18036584 -125749871 - L2 LINE L2 -2 3311 3266 396 262 252 0 chr12 18038047 18038253 -125748202 - MIR SINE MIR 0 262 5 22 70 0 0 chr12 18039141 18039184 -125747271 + AT_rich Low_complexity Low_complexity 1 43 0 387 0 0 0 chr12 18039927 18039970 -125746485 + (TG)n Simple_repeat Simple_repeat 2 44 0 453 308 55 28 chr12 18040431 18040613 -125745842 + MIR SINE MIR 48 234 -28 286 317 113 68 chr12 18041006 18041271 -125745184 - L2 LINE L2 -6 3266 2990 235 250 0 17 chr12 18041854 18041914 -125744541 + MLT1J LTR MaLR 2 60 -451 1789 139 73 0 chr12 18043255 18043543 -125742912 - AluSx SINE Alu -3 309 1 862 199 0 0 chr12 18043766 18043917 -125742538 + AluJb SINE Alu 148 298 -14 24 32 0 0 chr12 18044919 18044950 -125741505 + AT_rich Low_complexity Low_complexity 1 31 0 2142 129 8 36 chr12 18045048 18045284 -125741171 + THE1A LTR MaLR 1 225 -130 2502 66 0 0 chr12 18045284 18045586 -125740869 + AluY SINE Alu 1 302 -9 2142 129 8 36 chr12 18045586 18045714 -125740741 + THE1A LTR MaLR 225 355 0 11336 104 7 0 chr12 18045714 18047283 -125739172 + THE1A-int LTR MaLR 1 1580 0 2272 114 17 8 chr12 18047283 18047635 -125738820 + THE1A LTR MaLR 1 355 0 381 22 0 0 chr12 18048073 18048119 -125738336 + (CA)n Simple_repeat Simple_repeat 2 47 0 459 299 142 18 chr12 18048162 18048443 -125738012 - L3b LINE CR1 -166 1417 1102 419 368 54 28 chr12 18050082 18050493 -125735962 + L2 LINE L2 2753 3165 -107 767 115 33 8 chr12 18052565 18052687 -125733768 - FRAM SINE Alu -22 154 30 234 0 0 0 chr12 18053009 18053035 -125733420 + (T)n Simple_repeat Simple_repeat 1 26 0 268 366 53 68 chr12 18054538 18054803 -125731652 - L2 LINE L2 -4 3268 3008 211 324 83 66 chr12 18056146 18056322 -125730133 + MIR SINE MIR 16 192 -70 22 0 0 0 chr12 18056955 18056977 -125729478 + AT_rich Low_complexity Low_complexity 1 22 0 260 306 105 16 chr12 18057795 18057919 -125728536 + MIR3 SINE MIR 11 145 -63 7778 12 7 0 chr12 18057923 18059043 -125727412 + L1PA3 LINE L1 5030 6155 0 261 319 14 0 chr12 18059189 18059258 -125727197 + MIR SINE MIR 122 191 -71 490 287 120 35 chr12 18060217 18060534 -125725921 + MARNA DNA Mariner 10 353 -233 324 325 79 16 chr12 18060833 18060959 -125725496 - MIR SINE MIR -57 151 18 188 366 98 22 chr12 18063679 18063862 -125722593 + L2 LINE L2 2990 3186 -86 246 325 72 0 chr12 18063972 18064055 -125722400 + MIR3 SINE MIR 103 191 -17 450 291 146 28 chr12 18064939 18065152 -125721303 - MIR SINE MIR -24 238 1 819 343 89 28 chr12 18065544 18066109 -125720346 - L2 LINE L2 -4 3309 2717 247 191 0 0 chr12 18066563 18066605 -125719850 - MSTD LTR MaLR 0 396 355 1783 200 96 3 chr12 18066616 18066971 -125719484 - MSTD LTR MaLR -8 388 1 354 350 38 6 chr12 18067585 18067745 -125718710 - MIR3 SINE MIR -12 196 32 1952 110 76 0 chr12 18068531 18068822 -125717633 - AluSq SINE Alu 0 313 1 218 200 0 0 chr12 18071039 18071079 -125715376 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 21 71 0 0 chr12 18073053 18073095 -125713360 + AT_rich Low_complexity Low_complexity 1 42 0 198 230 23 11 chr12 18073833 18073920 -125712535 + CT-rich Low_complexity Low_complexity 1 88 0 397 291 168 17 chr12 18074114 18074293 -125712162 - MIR SINE MIR 0 262 57 191 361 12 36 chr12 18075661 18075744 -125710711 - L2 LINE L2 -5 3267 3187 225 65 0 0 chr12 18075954 18075985 -125710470 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 215 423 39 0 chr12 18075993 18076097 -125710358 - L2 LINE L2 -19 3253 3146 2134 120 141 8 chr12 18076296 18076664 -125709791 + MSTA LTR MaLR 1 417 -11 276 328 93 98 chr12 18076881 18077332 -125709123 + L2 LINE L2 2816 3264 -8 498 243 100 0 chr12 18077470 18077610 -125708845 - MER58A DNA MER1_type 0 156 3 1649 226 80 23 chr12 18077683 18078120 -125708335 + LTR40b LTR ERVL 1 462 0 669 292 60 17 chr12 18078153 18078386 -125708069 + MER102b DNA MER1_type 96 338 -3 2611 190 0 30 chr12 18080105 18080604 -125705851 - MER66B LTR ERV1 0 486 3 21 36 0 0 chr12 18081667 18081695 -125704760 + AT_rich Low_complexity Low_complexity 1 28 0 29 78 0 0 chr12 18082254 18082318 -125704137 + AT_rich Low_complexity Low_complexity 1 64 0 22 35 0 0 chr12 18082405 18082434 -125704021 + AT_rich Low_complexity Low_complexity 1 29 0 2072 112 26 10 chr12 18083065 18083368 -125703087 - AluSc SINE Alu -1 308 1 230 236 36 0 chr12 18083479 18083534 -125702921 - L2 LINE L2 -3 3310 3254 318 250 107 79 chr12 18086276 18086416 -125700039 + MER5A DNA MER1_type 43 186 -3 1443 134 50 23 chr12 18087449 18087710 -125698745 + L1PA16 LINE L1 5890 6157 -9 476 303 51 63 chr12 18087798 18088211 -125698244 - L1ME2 LINE L1 -286 5878 5471 1652 174 22 6 chr12 18088710 18089032 -125697423 - L1PA16 LINE L1 -2 6164 5838 266 333 53 38 chr12 18089094 18089226 -125697229 - MIR SINE MIR -103 159 26 690 240 63 0 chr12 18090686 18090861 -125695594 - MER5A DNA MER1_type 0 189 4 417 342 33 41 chr12 18091012 18091255 -125695200 - MLT1K LTR MaLR -211 377 137 230 347 89 8 chr12 18092667 18092791 -125693664 - MIR3 SINE MIR -73 135 2 350 339 144 6 chr12 18093416 18093596 -125692859 + MIR SINE MIR 31 235 -27 1022 261 28 47 chr12 18093664 18093908 -125692547 - MLT1I LTR MaLR 0 409 171 1761 185 3 3 chr12 18093908 18094211 -125692244 - AluJo SINE Alu -9 303 1 1022 261 28 47 chr12 18094211 18094284 -125692171 - MLT1I LTR MaLR -238 171 98 232 293 40 0 chr12 18094480 18094555 -125691900 + MIR SINE MIR 61 138 -124 1391 208 7 18 chr12 18095040 18095364 -125691091 - AluJo SINE Alu 0 323 3 30 77 0 0 chr12 18095474 18095539 -125690916 + AT_rich Low_complexity Low_complexity 1 65 0 271 334 142 22 chr12 18095628 18095938 -125690517 - L2 LINE L2 -213 3059 2727 231 301 44 48 chr12 18095953 18096159 -125690296 - HAL1 LINE L1 0 2507 2303 1310 121 5 47 chr12 18096320 18096535 -125689920 + AluJo SINE Alu 84 289 -23 335 313 79 51 chr12 18096680 18096894 -125689561 - L1MEd LINE L1 -2421 3708 3489 849 335 76 16 chr12 18097821 18098257 -125688198 - L2 LINE L2 -2 3311 2850 370 286 41 23 chr12 18098270 18098536 -125687919 - L1MEd LINE L1 -2996 3133 2863 326 254 15 46 chr12 18098570 18098700 -125687755 + L1MEd LINE L1 1129 1254 -4865 391 244 73 24 chr12 18098761 18098884 -125687571 + MER3 DNA MER1_type 74 202 -7 594 313 60 30 chr12 18098894 18099258 -125687197 - L2 LINE L2 -1147 2167 1793 1884 155 118 45 chr12 18099355 18099754 -125686701 + MSTA LTR MaLR 1 428 0 230 56 28 0 chr12 18099760 18099796 -125686659 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 734 282 73 63 chr12 18100145 18100666 -125685789 - L1MEd LINE L1 -3311 2818 2293 2137 122 0 0 chr12 18101545 18101841 -125684614 - AluSg SINE Alu -14 296 1 274 275 150 6 chr12 18101958 18102125 -125684330 - L1MEd LINE L1 -4641 1669 1479 759 289 48 29 chr12 18102166 18102690 -125683765 - L1MEd LINE L1 -4866 1253 852 410 312 40 40 chr12 18102850 18103049 -125683406 - L1MEd LINE L1 -5472 647 449 809 201 21 107 chr12 18103144 18103258 -125683197 + MER58C DNA MER1_type 2 124 -2296 189 74 0 0 chr12 18103258 18103285 -125683170 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 633 183 26 0 chr12 18103288 18103403 -125683052 - FLAM_C SINE Alu -15 118 1 809 201 21 107 chr12 18103403 18103518 -125682937 + MER58C DNA MER1_type 126 215 0 1303 198 26 40 chr12 18103579 18103751 -125682704 - L1M4 LINE L1 -810 5336 5170 2275 111 0 3 chr12 18103751 18104049 -125682406 + AluSc SINE Alu 1 297 -12 1303 198 26 40 chr12 18104049 18104225 -125682230 - L1M4 LINE L1 -976 5170 4993 448 193 0 0 chr12 18104276 18104359 -125682096 + L1MC1 LINE L1 6236 6318 -15 1752 175 0 7 chr12 18104359 18104656 -125681799 + AluJo SINE Alu 4 298 -14 2495 50 7 0 chr12 18104658 18104956 -125681499 + AluY SINE Alu 1 300 -11 1704 149 56 83 chr12 18104987 18105383 -125681072 + L1MB5 LINE L1 5782 6166 -8 22 70 0 0 chr12 18105492 18105535 -125680920 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr12 18105627 18105655 -125680800 + AT_rich Low_complexity Low_complexity 1 28 0 2267 108 0 0 chr12 18105864 18106160 -125680295 + AluSc SINE Alu 1 296 -13 285 301 62 18 chr12 18107639 18107752 -125678703 + L2 LINE L2 3150 3267 -5 199 254 34 51 chr12 18108330 18108389 -125678066 + L2 LINE L2 3246 3303 -10 1005 181 0 17 chr12 18110280 18110457 -125675998 - AluJb SINE Alu -2 310 137 734 200 45 73 chr12 18110814 18111034 -125675421 - MER20 DNA MER1_type -2 217 4 294 73 0 0 chr12 18112245 18112286 -125674169 + (TG)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr12 18112776 18112798 -125673657 + AT_rich Low_complexity Low_complexity 1 22 0 21 95 0 0 chr12 18113383 18113446 -125673009 + AT_rich Low_complexity Low_complexity 1 63 0 2205 119 0 16 chr12 18114703 18115013 -125671442 + AluSx SINE Alu 1 305 -7 445 207 40 87 chr12 18115312 18115462 -125670993 - MLT1J LTR MaLR -365 146 4 196 225 0 0 chr12 18115487 18115527 -125670928 - L2 LINE L2 -11 3302 3263 379 214 71 79 chr12 18117910 18118036 -125668419 + MLT1J2 LTR MaLR 26 150 -259 2466 121 162 22 chr12 18118342 18118806 -125667649 - MER1A DNA MER1_type 0 529 1 373 290 91 34 chr12 18119378 18119554 -125666901 + MLT1J2 LTR MaLR 241 426 -24 324 318 131 28 chr12 18119998 18120212 -125666243 - MIR SINE MIR -18 244 9 1222 82 6 0 chr12 18120586 18120756 -125665699 - L1PA11 LINE L1 -5 6169 5999 752 193 31 37 chr12 18120842 18121003 -125665452 + FRAM SINE Alu 1 159 -17 317 311 23 53 chr12 18121331 18121463 -125664992 + MIR SINE MIR 17 144 -64 26 30 0 0 chr12 18123561 18123594 -125662861 + AT_rich Low_complexity Low_complexity 1 33 0 566 277 38 6 chr12 18124030 18124189 -125662266 - MIR SINE MIR 0 262 99 21 36 0 0 chr12 18124637 18124665 -125661790 + AT_rich Low_complexity Low_complexity 1 28 0 205 189 57 0 chr12 18126888 18126941 -125659514 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 28 0 0 0 chr12 18128025 18128053 -125658402 + AT_rich Low_complexity Low_complexity 1 28 0 187 340 0 0 chr12 18128060 18128110 -125658345 + L2 LINE L2 3248 3297 -16 183 267 156 0 chr12 18128692 18128737 -125657718 - L2 LINE L2 -9 3263 3212 591 264 20 0 chr12 18128848 18128996 -125657459 + MIR SINE MIR 112 262 0 288 0 0 0 chr12 18129287 18129319 -125657136 + (T)n Simple_repeat Simple_repeat 1 32 0 502 346 42 0 chr12 18129552 18129766 -125656689 + MIR SINE MIR 1 223 -39 21 36 0 0 chr12 18129805 18129833 -125656622 + AT_rich Low_complexity Low_complexity 1 28 0 401 246 134 15 chr12 18130033 18130167 -125656288 + MIR3 SINE MIR 47 196 -12 2269 196 42 2 chr12 18130200 18130649 -125655806 + MLT1C LTR MaLR 1 467 0 222 231 0 0 chr12 18130691 18130743 -125655712 + (TA)n Simple_repeat Simple_repeat 1 52 0 297 280 10 40 chr12 18131528 18131628 -125654827 + MIR SINE MIR 150 246 -16 342 0 0 0 chr12 18133314 18133352 -125653103 + (CA)n Simple_repeat Simple_repeat 2 39 0 201 244 0 0 chr12 18134387 18134432 -125652023 + (TGGA)n Simple_repeat Simple_repeat 4 48 0 2000 196 65 7 chr12 18134713 18135116 -125651339 + MSTB LTR MaLR 1 426 0 4432 321 77 45 chr12 18136542 18140298 -125646157 + HERV16 LTR ERVL 493 4355 -1130 826 290 77 21 chr12 18140615 18141341 -125645114 + L1MC1 LINE L1 2008 2732 -3483 5742 197 32 5 chr12 18141411 18143028 -125643427 + L1MC1 LINE L1 4736 6401 -1 1928 270 102 28 chr12 18143028 18143914 -125642541 + L1ME3 LINE L1 5187 6133 -29 258 32 0 0 chr12 18143914 18143945 -125642510 + (TG)n Simple_repeat Simple_repeat 2 32 0 868 299 15 11 chr12 18147318 18147579 -125638876 + MIR SINE MIR 1 262 0 246 333 46 28 chr12 18147652 18147760 -125638695 - L2 LINE L2 -5 3308 3199 281 278 83 28 chr12 18147872 18147980 -125638475 + L2 LINE L2 3192 3305 -8 22 35 0 0 chr12 18148976 18149005 -125637450 + AT_rich Low_complexity Low_complexity 1 29 0 213 186 105 93 chr12 18149033 18149119 -125637336 + L2 LINE L2 3223 3309 -4 239 288 25 12 chr12 18149505 18149585 -125636870 + GA-rich Low_complexity Low_complexity 1 81 0 189 0 0 0 chr12 18149728 18149749 -125636706 + (CA)n Simple_repeat Simple_repeat 2 22 0 208 179 26 0 chr12 18149979 18150018 -125636437 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 1615 234 11 86 chr12 18150436 18150781 -125635674 + MLT2B1 LTR ERVL 1 290 -230 3618 75 0 0 chr12 18150781 18151234 -125635221 + MLT2A2 LTR ERVL 1 453 0 1615 234 11 86 chr12 18151234 18151448 -125635007 + MLT2B1 LTR ERVL 290 518 -2 477 0 0 0 chr12 18151459 18151512 -125634943 + (TG)n Simple_repeat Simple_repeat 2 54 0 327 304 66 53 chr12 18152174 18152287 -125634168 + HAL1 LINE L1 958 1068 -1439 13518 138 36 25 chr12 18152287 18154680 -125631775 + Tigger1 DNA MER2_type 1 2418 0 327 304 66 53 chr12 18154680 18154809 -125631646 + HAL1 LINE L1 1068 1203 -1304 21 0 0 0 chr12 18155991 18156012 -125630443 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr12 18156372 18156409 -125630046 + AT_rich Low_complexity Low_complexity 1 37 0 2005 144 3 0 chr12 18156510 18156802 -125629653 + AluSx SINE Alu 1 293 -19 221 375 0 0 chr12 18157100 18157180 -125629275 + L2 LINE L2 3234 3313 0 2246 54 9 66 chr12 18157204 18157521 -125628934 - AluY SINE Alu -12 299 1 21 0 0 0 chr12 18157693 18157714 -125628741 + AT_rich Low_complexity Low_complexity 1 21 0 216 289 42 56 chr12 18158063 18158205 -125628250 - L2 LINE L2 -577 2737 2598 1711 154 14 14 chr12 18158608 18158901 -125627554 + AluSx SINE Alu 2 294 -18 225 300 117 42 chr12 18160018 18160138 -125626317 - L2 LINE L2 -8 3264 3136 291 329 0 0 chr12 18160854 18160936 -125625519 + HERV16 LTR ERVL 1897 1978 -3018 1595 277 135 9 chr12 18160950 18161528 -125624927 + L1MEc LINE L1 68 718 -5678 322 313 60 0 chr12 18161803 18161937 -125624518 + HERV16 LTR ERVL 3427 3568 -1428 1039 326 73 47 chr12 18162006 18162662 -125623793 + HERV16 LTR ERVL 4055 4727 -1037 560 341 14 5 chr12 18162760 18162977 -125623478 + HERV16 LTR ERVL 4879 5097 -667 270 322 11 0 chr12 18163152 18163242 -125623213 + HERV16 LTR ERVL 4806 4896 -100 1053 259 97 35 chr12 18163364 18163734 -125622721 + LTR16A LTR ERVL 52 444 -6 750 282 82 5 chr12 18165344 18165564 -125620891 - MIR SINE MIR -7 255 19 488 311 76 7 chr12 18165853 18166047 -125620408 + MIR SINE MIR 2 208 -54 2018 147 18 54 chr12 18166717 18167106 -125619349 + THE1C LTR MaLR 1 375 0 1246 219 134 12 chr12 18167467 18167795 -125618660 + MLT1A2 LTR MaLR 1 368 -6 31 44 0 0 chr12 18168253 18168298 -125618157 + AT_rich Low_complexity Low_complexity 1 45 0 2240 180 7 31 chr12 18168370 18168815 -125617640 - Tigger2a DNA MER2_type 0 434 1 2199 107 0 3 chr12 18169161 18169451 -125617004 - AluSq SINE Alu -24 289 1 2349 81 0 34 chr12 18169477 18169758 -125616697 + AluY SINE Alu 1 271 -40 239 71 24 0 chr12 18169758 18169800 -125616655 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2349 81 0 34 chr12 18169800 18169838 -125616617 + AluY SINE Alu 271 309 -2 24 32 0 0 chr12 18170106 18170137 -125616318 + AT_rich Low_complexity Low_complexity 1 31 0 2457 109 43 3 chr12 18171320 18171670 -125614785 - THE1B LTR MaLR 0 364 1 258 275 217 0 chr12 18171893 18172031 -125614424 - MIR SINE MIR -77 185 18 736 340 19 4 chr12 18172138 18172394 -125614061 - MIR SINE MIR 0 262 3 321 313 104 66 chr12 18172864 18173439 -125613016 - L2 LINE L2 -1 3312 2705 357 179 46 6 chr12 18173480 18173653 -125612802 + (TA)n Simple_repeat Simple_repeat 1 180 0 235 386 9 0 chr12 18173765 18173879 -125612576 - L2 LINE L2 -689 2625 2511 266 331 178 12 chr12 18174673 18174836 -125611619 + LTR40b LTR ERVL 175 364 -98 279 114 0 0 chr12 18174885 18174929 -125611526 + (CA)n Simple_repeat Simple_repeat 1 44 0 412 334 46 26 chr12 18175182 18175532 -125610923 + L1ME LINE L1 947 1303 -4902 235 284 55 8 chr12 18175675 18175802 -125610653 + L1ME LINE L1 1477 1609 -4606 10029 177 15 11 chr12 18175814 18176133 -125610322 - L1PA14 LINE L1 -13 6148 5832 2465 91 0 0 chr12 18176133 18176440 -125610015 - AluSc SINE Alu -2 307 1 10029 177 15 11 chr12 18176440 18178906 -125607549 - L1PA14 LINE L1 -329 5832 3358 1310 217 23 26 chr12 18178908 18179258 -125607197 - L1PA14 LINE L1 -2906 3240 2892 21 0 0 0 chr12 18179632 18179653 -125606802 + AT_rich Low_complexity Low_complexity 1 21 0 1370 273 65 57 chr12 18179681 18180208 -125606247 + L1ME LINE L1 2178 2699 -3516 2233 139 21 19 chr12 18180208 18180582 -125605873 + THE1C LTR MaLR 1 375 0 1370 273 65 57 chr12 18180582 18180603 -125605852 + L1ME LINE L1 2699 2718 -3497 490 91 39 0 chr12 18180603 18180680 -125605775 - MADE1 DNA Mariner 0 80 1 1370 273 65 57 chr12 18180680 18181118 -125605337 + L1ME LINE L1 2718 3132 -3083 30 45 0 0 chr12 18181207 18181251 -125605204 + AT_rich Low_complexity Low_complexity 1 44 0 186 43 0 0 chr12 18181254 18181277 -125605178 + (TTTTTA)n Simple_repeat Simple_repeat 1 23 0 383 320 17 23 chr12 18181322 18181494 -125604961 + L1ME LINE L1 3179 3349 -2866 237 204 0 0 chr12 18183071 18183115 -125603340 + GA-rich Low_complexity Low_complexity 2 45 0 310 198 168 20 chr12 18186174 18186275 -125600180 + L1ME LINE L1 4565 4680 -1535 48 0 0 0 chr12 18186324 18186372 -125600083 + AT_rich Low_complexity Low_complexity 1 48 0 6826 200 10 9 chr12 18186469 18188004 -125598451 - L1M LINE L1 -743 5403 3893 4955 92 29 3 chr12 18188004 18188365 -125598090 + L1PB1 LINE L1 5410 5760 -391 198 0 0 0 chr12 18188365 18188387 -125598068 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 225 0 0 0 chr12 18188386 18188411 -125598044 + (TA)n Simple_repeat Simple_repeat 2 26 0 4955 92 29 3 chr12 18188387 18188764 -125597691 + L1PB1 LINE L1 5760 6147 -4 382 304 127 19 chr12 18188776 18189295 -125597160 + L1ME LINE L1 4804 5378 -837 2031 137 3 16 chr12 18189295 18189602 -125596853 + AluSx SINE Alu 1 303 -9 946 133 0 22 chr12 18189615 18189795 -125596660 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 968 288 65 24 chr12 18189825 18190329 -125596126 + L1ME LINE L1 5362 5886 -345 1272 245 30 13 chr12 18190950 18191248 -125595207 + MER69 DNA AcHobo 7 309 -2217 236 242 24 40 chr12 18191281 18191405 -125595050 - L1MC4 LINE L1 -1308 6734 6613 214 258 0 0 chr12 18191405 18191471 -125594984 + (TA)n Simple_repeat Simple_repeat 1 66 0 367 362 7 0 chr12 18191580 18191718 -125594737 + MER69 DNA AcHobo 429 567 -659 * 731 231 141 12 chr12 18191715 18191971 -125594484 + MER69 DNA AcHobo 2006 2294 -232 5690 135 9 24 chr12 18191999 18192623 -125593832 + L1PA14 LINE L1 4704 5336 -825 3209 54 7 19 chr12 18192623 18193051 -125593404 + L1PA8 LINE L1 5750 6172 0 5690 135 9 24 chr12 18193051 18193868 -125592587 + L1PA14 LINE L1 5336 6128 -33 334 260 0 10 chr12 18193949 18194053 -125592402 + MER69 DNA AcHobo 2424 2526 0 303 230 0 14 chr12 18195484 18195558 -125590897 + MER5C DNA MER1_type 52 124 -200 317 271 25 0 chr12 18195613 18195706 -125590749 - Tigger7 DNA MER2_type 0 2487 639 283 192 0 0 chr12 18195740 18195792 -125590663 + Tigger3(Golem) DNA MER2_type 153 204 -2825 1414 89 61 0 chr12 18195796 18196009 -125590446 + Tigger3(Golem) DNA MER2_type 2631 2856 -173 593 53 13 0 chr12 18196009 18196085 -125590370 + MADE1 DNA Mariner 4 80 0 2906 180 39 19 chr12 18196097 18196367 -125590088 - MER7C DNA MER2_type -2426 602 339 2406 61 3 0 chr12 18196367 18196661 -125589794 + AluY SINE Alu 1 295 -16 2906 180 39 19 chr12 18196661 18196980 -125589475 - MER7C DNA MER2_type -2689 339 1 343 82 0 129 chr12 18196980 18197057 -125589398 - MER44D DNA MER2_type -1966 521 454 2271 169 35 24 chr12 18197075 18197501 -125588954 - MER44D DNA MER2_type -119 486 1 1449 224 64 43 chr12 18199519 18199957 -125586498 - MLT1C LTR MaLR 0 467 21 2299 117 3 0 chr12 18200433 18200741 -125585714 + AluSp SINE Alu 3 311 -2 21 0 0 0 chr12 18200760 18200781 -125585674 + AT_rich Low_complexity Low_complexity 1 21 0 44341 36 3 2 chr12 18200899 18207046 -125579409 + L1PA4 LINE L1 3 6155 0 1424 241 99 55 chr12 18207205 18208054 -125578401 - L1MC5 LINE L1 -31 7930 7045 21 36 0 0 chr12 18208076 18208104 -125578351 + AT_rich Low_complexity Low_complexity 1 28 0 205 286 29 0 chr12 18208141 18208211 -125578244 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 374 185 22 43 chr12 18208285 18208377 -125578078 - L1MC5 LINE L1 -1098 6863 6774 231 323 102 32 chr12 18208380 18208947 -125577508 - L1MC4a LINE L1 -1155 6653 6047 1692 185 3 0 chr12 18209015 18209301 -125577154 + AluJo SINE Alu 5 291 -21 711 274 12 37 chr12 18209363 18209608 -125576847 - L1MC4a LINE L1 -1941 5867 5629 235 116 139 0 chr12 18210564 18210607 -125575848 - MER58D DNA MER1_type 0 386 338 25 0 0 0 chr12 18210621 18210646 -125575809 + AT_rich Low_complexity Low_complexity 1 25 0 2435 169 41 8 chr12 18210658 18211150 -125575305 - L1MA4 LINE L1 -14 6286 5779 238 126 44 66 chr12 18211169 18211352 -125575103 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 3153 162 19 4 chr12 18211358 18212366 -125574089 - L1MA4 LINE L1 -497 5803 4781 1836 165 22 25 chr12 18212366 18212724 -125573731 - MER58D DNA MER1_type -29 357 1 372 221 32 32 chr12 18212802 18212897 -125573558 + L2 LINE L2 3219 3313 0 263 333 42 42 chr12 18213386 18213530 -125572925 - MIR3 SINE MIR -13 195 52 693 296 65 68 chr12 18214162 18214429 -125572026 + MLT1H LTR MaLR 1 268 -281 863 270 9 35 chr12 18214429 18214659 -125571796 - MER58A DNA MER1_type 0 224 1 693 296 65 68 chr12 18214659 18214746 -125571709 + MLT1H LTR MaLR 268 354 -195 426 39 0 0 chr12 18217511 18217563 -125568892 + (TG)n Simple_repeat Simple_repeat 2 53 0 237 65 0 0 chr12 18218423 18218454 -125568001 + (TG)n Simple_repeat Simple_repeat 1 31 0 1986 249 76 17 chr12 18218975 18219754 -125566701 + L1MC4 LINE L1 7217 8041 -1 1580 165 66 11 chr12 18221253 18221525 -125564930 - AluJo SINE Alu -24 288 2 261 372 31 0 chr12 18223343 18223472 -125562983 - L3 LINE CR1 -38 1539 1407 22 0 0 0 chr12 18223632 18223654 -125562801 + AT_rich Low_complexity Low_complexity 1 22 0 1744 129 24 86 chr12 18225279 18225424 -125561031 + L1PA16 LINE L1 5713 5865 -301 2301 100 0 3 chr12 18225424 18225723 -125560732 + AluSx SINE Alu 1 298 -14 1744 129 24 86 chr12 18225723 18225975 -125560480 + L1PA16 LINE L1 5865 6082 -84 1566 165 32 52 chr12 18226626 18226935 -125559520 + AluJo SINE Alu 1 303 -9 403 257 86 0 chr12 18227776 18227881 -125558574 + L2 LINE L2 3200 3313 0 239 293 65 66 chr12 18227896 18227981 -125558474 + MIR SINE MIR 20 106 -135 1682 191 10 57 chr12 18227981 18228364 -125558091 + MLT1A1 LTR MaLR 1 365 0 239 293 65 66 chr12 18228364 18228405 -125558050 + MIR SINE MIR 106 146 -95 2237 103 0 0 chr12 18228696 18228987 -125557468 + AluSx SINE Alu 14 304 -8 228 163 0 0 chr12 18229377 18229420 -125557035 + T-rich Low_complexity Low_complexity 1 43 0 2248 119 0 3 chr12 18230131 18230434 -125556021 + AluSx SINE Alu 1 302 -10 251 296 44 89 chr12 18230763 18230859 -125555596 + MIR SINE MIR 50 140 -122 2231 94 0 23 chr12 18230859 18231158 -125555297 + AluY SINE Alu 1 292 -19 251 296 44 89 chr12 18231158 18231196 -125555259 + MIR SINE MIR 140 178 -84 209 200 0 0 chr12 18231256 18231296 -125555159 + (CAT)n Simple_repeat Simple_repeat 2 41 0 263 311 83 23 chr12 18232205 18232337 -125554118 - MIR SINE MIR -6 256 117 2386 103 0 0 chr12 18232354 18232664 -125553791 - AluSx SINE Alu -2 310 1 370 243 138 40 chr12 18233982 18234134 -125552321 + MIR SINE MIR 30 196 -66 2560 59 0 0 chr12 18234148 18234451 -125552004 + AluY SINE Alu 1 303 -8 293 268 108 57 chr12 18234544 18234701 -125551754 - MIR SINE MIR -50 212 48 180 0 0 0 chr12 18235370 18235390 -125551065 + (T)n Simple_repeat Simple_repeat 1 20 0 2364 90 0 0 chr12 18237873 18238173 -125548282 - AluY SINE Alu -11 300 1 244 260 26 13 chr12 18238314 18238391 -125548064 + (TATATG)n Simple_repeat Simple_repeat 1 78 0 257 273 73 60 chr12 18239257 18239407 -125547048 - MIR SINE MIR 0 262 111 2242 212 72 32 chr12 18239521 18240733 -125545722 + L1ME2 LINE L1 4757 6015 -149 1420 169 22 18 chr12 18240733 18241011 -125545444 - MLT1A1 LTR MaLR 0 365 87 4000 185 35 4 chr12 18241011 18241947 -125544508 + L1 LINE L1 2329 3293 -2853 1264 189 102 7 chr12 18241950 18242060 -125544395 + AluJo SINE Alu 12 110 -202 207 0 0 0 chr12 18242060 18242083 -125544372 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1264 189 102 7 chr12 18242083 18242247 -125544208 + AluJo SINE Alu 110 312 0 2804 195 35 5 chr12 18242248 18242548 -125543907 + L1 LINE L1 3296 3586 -2560 237 33 0 0 chr12 18242548 18242578 -125543877 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2804 195 35 5 chr12 18242578 18242907 -125543548 + L1 LINE L1 3586 3944 -2202 334 284 23 0 chr12 18242912 18243000 -125543455 - L1MC4 LINE L1 -1339 6703 6614 326 220 0 22 chr12 18243000 18243091 -125543364 + (TATATG)n Simple_repeat Simple_repeat 3 91 0 235 300 0 0 chr12 18243092 18243182 -125543273 + L1MC4 LINE L1 6614 6703 -1339 228 234 0 0 chr12 18243140 18243204 -125543251 - L1MC4 LINE L1 -1339 6703 6640 * 698 178 0 23 chr12 18243223 18243352 -125543103 + FLAM_A SINE Alu 6 131 -11 1393 128 0 0 chr12 18243354 18243580 -125542875 + L1 LINE L1 3952 4177 -1969 342 186 12 0 chr12 18243580 18243666 -125542789 + L1MA4 LINE L1 6208 6294 -6 2408 58 7 3 chr12 18243672 18243966 -125542489 - AluY SINE Alu -16 295 1 30 0 0 0 chr12 18243979 18244009 -125542446 + AT_rich Low_complexity Low_complexity 1 30 0 257 254 99 0 chr12 18245609 18245680 -125540775 - MIR SINE MIR -73 189 112 230 310 19 82 chr12 18246104 18246262 -125540193 + L2 LINE L2 2609 2756 -558 451 174 104 0 chr12 18246866 18247080 -125539375 - L1MA4A LINE L1 -25 6278 5981 186 189 0 0 chr12 18248336 18248373 -125538082 + (CATA)n Simple_repeat Simple_repeat 4 40 0 23 68 0 0 chr12 18248701 18248745 -125537710 + AT_rich Low_complexity Low_complexity 1 44 0 379 290 0 10 chr12 18248837 18248937 -125537518 - MIR3 SINE MIR -33 175 77 463 0 0 0 chr12 18250785 18250839 -125535616 + LTR12 LTR ERV1 653 706 -8 394 250 50 0 chr12 18250891 18250991 -125535464 + MIR SINE MIR 87 191 -71 216 0 0 0 chr12 18251014 18251038 -125535417 + (CA)n Simple_repeat Simple_repeat 1 24 0 584 234 53 35 chr12 18251039 18251170 -125535285 + MIR SINE MIR 89 225 -37 4913 76 45 1 chr12 18251170 18251829 -125534626 + LTR12 LTR ERV1 1 688 0 584 234 53 35 chr12 18251829 18251868 -125534587 + MIR SINE MIR 225 262 0 266 258 106 30 chr12 18252348 18252480 -125533975 - MIR3 SINE MIR -5 203 62 * 467 247 31 66 chr12 18252474 18252675 -125533780 + MIR SINE MIR 64 256 -6 186 320 16 107 chr12 18253959 18254081 -125532374 - MIR SINE MIR -78 130 20 1359 218 56 6 chr12 18255808 18256147 -125530308 + MLT1A1 LTR MaLR 10 365 0 2424 65 3 7 chr12 18256579 18256888 -125529567 - AluY SINE Alu -3 308 1 314 293 57 12 chr12 18257238 18257368 -125529087 - MIR SINE MIR -68 140 20 205 319 22 33 chr12 18257432 18257523 -125528932 - MER5A DNA MER1_type -45 144 55 333 0 0 0 chr12 18260059 18260096 -125526359 + (TG)n Simple_repeat Simple_repeat 2 38 0 824 268 52 20 chr12 18261412 18261662 -125524793 + MIR SINE MIR 5 262 0 479 245 97 36 chr12 18261837 18262033 -125524422 - L2 LINE L2 -1 3312 3105 189 431 0 0 chr12 18262192 18262301 -125524154 - L2 LINE L2 -460 2854 2746 4834 153 19 76 chr12 18262301 18262678 -125523777 + L1MA5 LINE L1 4922 5319 -981 189 0 0 0 chr12 18262678 18262699 -125523756 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2153 51 0 33 chr12 18262702 18262976 -125523479 + AluY SINE Alu 21 285 -26 4834 153 19 76 chr12 18262976 18264033 -125522422 + L1MA5 LINE L1 5321 6298 -2 536 259 56 25 chr12 18264563 18264760 -125521695 - MIR SINE MIR -48 214 12 223 352 56 50 chr12 18265324 18265662 -125520793 + L2 LINE L2 2265 2604 -710 616 317 67 31 chr12 18266536 18266896 -125519559 - HERV16 LTR ERVL -423 5341 4969 386 332 46 14 chr12 18267121 18267338 -125519117 - HERV16 LTR ERVL -1119 4645 4422 1310 210 76 74 chr12 18267343 18267693 -125518762 - MLT1D LTR MaLR 0 505 152 2061 93 10 58 chr12 18267693 18268004 -125518451 - AluSx SINE Alu -16 296 1 1310 210 76 74 chr12 18268004 18268153 -125518302 - MLT1D LTR MaLR -353 152 5 882 273 62 35 chr12 18268255 18268658 -125517797 - HERV16 LTR ERVL -1295 4359 3946 660 372 57 50 chr12 18268854 18269745 -125516710 - HERV16 LTR ERVL -3428 1568 666 1892 178 25 8 chr12 18269745 18270104 -125516351 + MLT1A1 LTR MaLR 1 365 0 660 372 57 50 chr12 18270104 18270380 -125516075 - HERV16 LTR ERVL -4330 666 393 572 169 110 15 chr12 18270465 18270601 -125515854 - L1MA10 LINE L1 -1 6333 6185 2331 109 19 25 chr12 18271123 18271489 -125514966 - THE1B LTR MaLR 0 364 1 1918 77 8 0 chr12 18271489 18271748 -125514707 - THE1B-int LTR MaLR 0 1580 1320 288 0 0 0 chr12 18272047 18272079 -125514376 + (CA)n Simple_repeat Simple_repeat 2 33 0 273 29 0 0 chr12 18272078 18272112 -125514343 + (TC)n Simple_repeat Simple_repeat 2 35 0 * 275 268 0 61 chr12 18273185 18273267 -125513188 + L2 LINE L2 3232 3308 -5 195 191 0 147 chr12 18273476 18273544 -125512911 + L2 LINE L2 3246 3303 -10 279 0 0 0 chr12 18274117 18274148 -125512307 + (TA)n Simple_repeat Simple_repeat 1 31 0 1295 251 51 29 chr12 18274168 18274543 -125511912 + LTR10C LTR ERV1 188 570 -21 219 146 42 21 chr12 18274801 18274849 -125511606 + L2 LINE L2 3259 3307 -6 185 310 28 28 chr12 18274907 18274978 -125511477 - L2 LINE L2 -4 3268 3198 600 305 56 15 chr12 18276656 18276997 -125509458 + L1ME3A LINE L1 4636 4990 -1156 432 146 19 19 chr12 18277005 18277163 -125509292 + (TA)n Simple_repeat Simple_repeat 1 158 0 1006 181 6 0 chr12 18277163 18277329 -125509126 - FRAM SINE Alu -9 167 1 450 294 112 36 chr12 18277473 18277768 -125508687 + L1ME3A LINE L1 5144 5415 -755 4976 78 6 3 chr12 18277768 18278435 -125508020 + L1PA10 LINE L1 5499 6167 -1 450 294 112 36 chr12 18278435 18278796 -125507659 + L1ME3A LINE L1 5415 5848 -322 277 315 48 20 chr12 18278874 18279020 -125507435 + L1ME3A LINE L1 6010 6159 -11 468 224 0 0 chr12 18279268 18279353 -125507102 + L2 LINE L2 3229 3313 0 333 265 33 80 chr12 18279480 18279658 -125506797 - MLT1J LTR MaLR -21 470 262 450 250 153 23 chr12 18279662 18279838 -125506617 - MER58C DNA MER1_type 0 215 17 523 323 14 32 chr12 18279909 18280126 -125506329 - MLT1J LTR MaLR -246 265 53 313 272 102 34 chr12 18280352 18280499 -125505956 - L1ME2 LINE L1 -283 5881 5725 2137 95 7 128 chr12 18281385 18281847 -125504608 - L1MA5 LINE L1 -2 6298 5893 21 0 0 0 chr12 18282862 18282883 -125503572 + AT_rich Low_complexity Low_complexity 1 21 0 486 335 17 9 chr12 18283071 18283250 -125503205 - MIR SINE MIR -64 144 15 2405 93 0 3 chr12 18283371 18283682 -125502773 + AluSq SINE Alu 1 310 -3 3190 153 12 14 chr12 18284893 18285457 -125500998 - L1MA6 LINE L1 0 6300 5738 985 103 28 0 chr12 18285460 18285605 -125500850 + L1MA6 LINE L1 5606 5754 -546 248 343 38 45 chr12 18286072 18286203 -125500252 - L2 LINE L2 -626 2688 2558 3725 127 9 61 chr12 18286203 18286814 -125499641 - MER39B LTR ERV1 -3 650 77 2086 99 4 0 chr12 18286814 18287087 -125499368 - AluSc SINE Alu -15 294 21 3725 127 9 61 chr12 18287087 18287159 -125499296 - MER39B LTR ERV1 -576 77 3 248 343 38 45 chr12 18287159 18287292 -125499163 - L2 LINE L2 -756 2558 2426 248 323 85 43 chr12 18287997 18288129 -125498326 - L2 LINE L2 -1 3312 3170 273 29 0 0 chr12 18288129 18288163 -125498292 + (TG)n Simple_repeat Simple_repeat 2 35 0 248 323 85 43 chr12 18288163 18288194 -125498261 - L2 LINE L2 -143 3170 3142 626 129 0 0 chr12 18288217 18288302 -125498153 + MER81 DNA DNA 30 114 0 447 322 16 22 chr12 18288307 18288490 -125497965 - L2 LINE L2 -225 3088 2907 235 125 429 0 chr12 18288496 18288552 -125497903 + MADE1 DNA Mariner 1 80 0 252 318 141 28 chr12 18290057 18290312 -125496143 + L2 LINE L2 2130 2413 -901 322 283 60 60 chr12 18290505 18290671 -125495784 + LTR33 LTR ERVL 29 194 -327 611 315 90 74 chr12 18291092 18292306 -125494149 + L2 LINE L2 2045 3271 -1 278 250 29 0 chr12 18292388 18292456 -125493999 + L2 LINE L2 3187 3256 -16 269 322 99 8 chr12 18293527 18293648 -125492807 - MIR3 SINE MIR -23 185 54 184 71 71 24 chr12 18294360 18294402 -125492053 + (TTTAA)n Simple_repeat Simple_repeat 4 47 0 259 111 0 0 chr12 18294404 18294440 -125492015 + U2 snRNA snRNA 1 36 -152 327 85 0 0 chr12 18294801 18294848 -125491607 + (GA)n Simple_repeat Simple_repeat 2 48 0 1927 82 22 97 chr12 18295052 18295371 -125491084 + AluYb8 SINE Alu 1 295 -23 255 323 126 71 chr12 18295637 18296136 -125490319 + L2 LINE L2 2774 3301 -12 223 174 0 0 chr12 18296214 18296260 -125490195 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 367 354 76 56 chr12 18296431 18296827 -125489628 - L2 LINE L2 -17 3255 2852 249 339 0 0 chr12 18297030 18297145 -125489310 - MER113 DNA MER1_type? -43 478 364 639 265 104 19 chr12 18297165 18297376 -125489079 + MIR SINE MIR 34 262 0 289 143 129 0 chr12 18297388 18297458 -125488997 - MER113 DNA MER1_type? -306 215 137 5313 160 14 39 chr12 18297461 18298897 -125487558 + L1PA16 LINE L1 4435 5818 -348 1895 132 0 0 chr12 18298897 18299163 -125487292 + AluSx SINE Alu 39 304 -8 5313 160 14 39 chr12 18299163 18299491 -125486964 + L1PA16 LINE L1 5818 6153 -13 272 345 47 18 chr12 18299900 18300071 -125486384 - L2 LINE L2 -837 2477 2302 1253 146 81 158 chr12 18300232 18300663 -125485792 - MLT2D LTR ERVL -14 400 3 1918 133 133 21 chr12 18300902 18301287 -125485168 - MSTA LTR MaLR 0 428 1 380 297 28 7 chr12 18302180 18302325 -125484130 + L1ME LINE L1 5572 5719 -402 252 269 118 8 chr12 18302388 18302507 -125483948 + L1ME LINE L1 5728 5859 -262 181 346 50 10 chr12 18303188 18303289 -125483166 - MIR SINE MIR -77 185 81 6284 25 8 1 chr12 18303561 18304306 -125482149 - L1PA4 LINE L1 -3 6152 5403 320 247 177 48 chr12 18304800 18304986 -125481469 + MIR SINE MIR 47 256 -6 835 194 83 0 chr12 18305386 18305566 -125480889 - MER58B DNA MER1_type -1 340 146 2213 114 3 9 chr12 18305567 18305882 -125480573 - AluSp SINE Alu 0 313 1 244 260 26 13 chr12 18306023 18306100 -125480355 + (TATATG)n Simple_repeat Simple_repeat 1 78 0 331 263 5 37 chr12 18307115 18307332 -125479123 + L1P4 LINE L1 5455 5664 -510 237 319 0 0 chr12 18307343 18307462 -125478993 + AluSq/x SINE Alu 6 124 -179 189 0 0 0 chr12 18307641 18307662 -125478793 + (A)n Simple_repeat Simple_repeat 1 21 0 3609 105 14 0 chr12 18307677 18308190 -125478265 + L1PA11 LINE L1 5652 6171 -3 1699 100 47 0 chr12 18308804 18309105 -125477350 - L1PA7 LINE L1 -5 6149 5835 199 328 69 0 chr12 18309534 18309592 -125476863 + L2 LINE L2 3194 3255 -17 182 148 0 0 chr12 18309953 18309980 -125476475 + L2 LINE L2 3267 3293 -20 686 44 0 11 chr12 18310543 18310634 -125475821 + (TTCC)n Simple_repeat Simple_repeat 1 90 0 353 290 60 10 chr12 18311190 18311290 -125475165 - L2 LINE L2 -21 3251 3147 838 300 48 31 chr12 18311408 18311761 -125474694 + L2 LINE L2 2955 3313 0 659 289 27 51 chr12 18312936 18313192 -125473263 + MIR SINE MIR 13 262 0 206 116 23 0 chr12 18313481 18313524 -125472931 + A-rich Low_complexity Low_complexity 2 45 0 2016 115 0 4 chr12 18313538 18313816 -125472639 - AluSx SINE Alu -25 287 11 2232 200 131 24 chr12 18314512 18315216 -125471239 + LTR1B LTR ERV1 1 826 0 24 0 0 0 chr12 18315399 18315423 -125471032 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr12 18315566 18315593 -125470862 + (CA)n Simple_repeat Simple_repeat 2 28 0 833 169 49 0 chr12 18316216 18316358 -125470097 + MSTB1 LTR MaLR 4 152 -274 1423 158 54 0 chr12 18316656 18316897 -125469558 + MSTB1 LTR MaLR 157 410 -22 214 188 21 42 chr12 18317187 18317235 -125469220 + MIR SINE MIR 110 151 -57 210 302 143 8 chr12 18317445 18317571 -125468884 + MIR SINE MIR 96 238 -24 256 57 0 75 chr12 18317722 18317775 -125468680 + (GAAAA)n Simple_repeat Simple_repeat 3 51 0 2242 48 0 0 chr12 18317971 18318242 -125468213 - L1PA5 LINE L1 -498 5656 5386 4008 47 0 2 chr12 18318242 18318733 -125467722 + L1PA5 LINE L1 5661 6151 -3 220 193 52 46 chr12 18319621 18319723 -125466732 - L2 LINE L2 -274 3039 2937 198 157 216 0 chr12 18319837 18319888 -125466567 + L2 LINE L2 3234 3295 -18 546 329 49 4 chr12 18319897 18320143 -125466312 + MIR SINE MIR 2 258 -4 251 308 0 0 chr12 18320217 18320282 -125466173 + MLT1J LTR MaLR 103 167 -344 3388 128 35 2 chr12 18320410 18320920 -125465535 + MER1A DNA MER1_type 1 527 0 202 332 190 17 chr12 18321282 18321634 -125464821 - L2 LINE L2 -613 2701 2289 285 197 0 0 chr12 18321640 18321706 -125464749 + (CAT)n Simple_repeat Simple_repeat 3 68 0 240 309 175 0 chr12 18321945 18322042 -125464413 + MIR SINE MIR 59 172 -90 432 273 61 23 chr12 18325230 18325362 -125461093 - MIR SINE MIR -87 175 39 234 105 0 0 chr12 18325744 18325782 -125460673 + (T)n Simple_repeat Simple_repeat 1 38 0 25 31 0 0 chr12 18327710 18327742 -125458713 + AT_rich Low_complexity Low_complexity 1 32 0 2245 95 0 0 chr12 18327933 18328227 -125458228 + AluY SINE Alu 1 294 -17 383 337 18 30 chr12 18328301 18328467 -125457988 - MIR SINE MIR -55 207 44 23 0 0 0 chr12 18328839 18328862 -125457593 + AT_rich Low_complexity Low_complexity 1 23 0 6524 102 3 9 chr12 18329616 18330569 -125455886 + L1MA1 LINE L1 5356 6302 0 24 77 0 0 chr12 18331065 18331117 -125455338 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr12 18331182 18331205 -125455250 + AT_rich Low_complexity Low_complexity 1 23 0 408 365 45 14 chr12 18332328 18332550 -125453905 + L3 LINE CR1 199 427 -1150 272 288 114 15 chr12 18332559 18332691 -125453764 - MLT1L LTR MaLR -135 480 336 567 281 107 43 chr12 18332922 18333250 -125453205 - MLT1J2 LTR MaLR -2 448 100 450 361 102 17 chr12 18333317 18333669 -125452786 + L3 LINE CR1 475 856 -721 184 289 58 0 chr12 18333677 18333729 -125452726 - L2 LINE L2 -5 3308 3254 267 343 157 11 chr12 18333897 18334075 -125452380 + L3 LINE CR1 976 1179 -398 236 320 104 32 chr12 18336823 18336948 -125449507 + L2 LINE L2 3139 3272 0 663 300 76 13 chr12 18337083 18337320 -125449135 + MIR SINE MIR 11 262 0 440 291 8 8 chr12 18337527 18337661 -125448794 - MIR SINE MIR 0 262 129 261 326 22 65 chr12 18337693 18337877 -125448578 + L2 LINE L2 3119 3294 -19 781 158 146 126 chr12 18337879 18338126 -125448329 + AluJo SINE Alu 43 294 -18 298 299 31 10 chr12 18338160 18338257 -125448198 - MIR SINE MIR -156 106 8 327 293 145 21 chr12 18338341 18338583 -125447872 + L2 LINE L2 2042 2313 -1001 278 217 20 113 chr12 18338839 18338969 -125447486 + MLT1J2 LTR MaLR 41 162 -284 227 140 20 0 chr12 18339352 18339402 -125447053 + L1ME4a LINE L1 6060 6110 -11 256 347 20 80 chr12 18339523 18339774 -125446681 + L2 LINE L2 2867 3102 -170 2140 119 3 3 chr12 18339860 18340162 -125446293 + AluSc SINE Alu 1 302 -7 334 182 0 0 chr12 18341275 18341330 -125445125 + MER45 DNA AcHobo 1526 1580 -1 751 251 105 16 chr12 18343376 18343623 -125442832 - MER20B DNA MER1_type -287 496 228 783 276 142 35 chr12 18343748 18344114 -125442341 - MER20B DNA MER1_type -375 408 4 1441 200 17 24 chr12 18344138 18344433 -125442022 - AluJo SINE Alu -19 293 1 206 388 3 3 chr12 18344641 18344763 -125441692 + MIR SINE MIR 30 150 -64 1753 160 0 4 chr12 18344817 18345079 -125441376 - AluJb SINE Alu -29 283 23 1952 161 69 62 chr12 18346186 18346608 -125439847 + MSTB LTR MaLR 2 426 0 372 256 158 24 chr12 18346829 18346993 -125439462 + L2 LINE L2 3127 3312 -1 5861 95 17 51 chr12 18351650 18352039 -125434416 + L1PA11 LINE L1 5284 5685 -489 1719 157 0 63 chr12 18352039 18352358 -125434097 + AluSx SINE Alu 6 304 -8 5861 95 17 51 chr12 18352358 18352887 -125433568 + L1PA11 LINE L1 5685 6171 -3 25986 89 6 41 chr12 18353530 18357342 -125429113 - L1PA7 LINE L1 -5 6149 2546 324 0 0 0 chr12 18357342 18357378 -125429077 + (TTA)n Simple_repeat Simple_repeat 2 37 0 25986 89 6 41 chr12 18357378 18358450 -125428005 - L1PA7 LINE L1 -3608 2546 1438 531 282 70 0 chr12 18358450 18358677 -125427778 + L1ME2 LINE L1 1618 1860 -4536 1358 209 80 21 chr12 18358695 18359168 -125427287 + L1ME2 LINE L1 2938 3438 -2777 334 268 79 26 chr12 18359179 18359369 -125427086 - AluY SINE Alu 0 301 102 5686 245 56 24 chr12 18360142 18360188 -125426267 + L1ME2 LINE L1 3393 3436 -2797 1799 173 23 7 chr12 18360188 18360495 -125425960 - AluSx SINE Alu 0 312 1 5686 245 56 24 chr12 18360495 18362168 -125424287 + L1ME2 LINE L1 3436 5232 -1001 2004 125 0 19 chr12 18362168 18362481 -125423974 - AluSc SINE Alu -2 307 1 5686 245 56 24 chr12 18362481 18363506 -125422949 + L1ME2 LINE L1 5232 6222 -11 649 142 0 22 chr12 18364255 18364389 -125422066 + (TTCC)n Simple_repeat Simple_repeat 4 134 0 5019 143 16 22 chr12 18365465 18366830 -125419625 + L1PA16 LINE L1 4808 6159 -7 1952 121 41 0 chr12 18367120 18367410 -125419045 + AluSg SINE Alu 1 302 -8 490 331 93 18 chr12 18367986 18368264 -125418191 + MLT1L LTR MaLR 306 604 -11 216 0 0 0 chr12 18368774 18368798 -125417657 + (CAATT)n Simple_repeat Simple_repeat 4 27 0 595 299 117 7 chr12 18368985 18369283 -125417172 + MLT1J LTR MaLR 3 333 -178 203 194 0 0 chr12 18372163 18372199 -125414256 + A-rich Low_complexity Low_complexity 1 36 0 285 354 6 6 chr12 18372504 18372662 -125413793 + (TA)n Simple_repeat Simple_repeat 1 158 0 22 35 0 0 chr12 18375585 18375614 -125410841 + AT_rich Low_complexity Low_complexity 1 29 0 279 324 65 0 chr12 18376009 18376148 -125410307 - L1MA5 LINE L1 -412 5888 5741 230 282 56 0 chr12 18376139 18376210 -125410245 + L1ME LINE L1 5562 5636 -534 * 1598 326 65 41 chr12 18376413 18377560 -125408895 - L2 LINE L2 -3 3310 2133 1284 297 102 52 chr12 18377974 18378709 -125407746 - L2 LINE L2 -1184 2130 1359 1645 210 79 50 chr12 18378711 18379328 -125407127 + MLT1E3 LTR MaLR 1 624 0 612 318 131 42 chr12 18379329 18379779 -125406676 - L2 LINE L2 -1960 1354 865 1151 213 4 9 chr12 18380154 18380379 -125406076 + MER58A DNA MER1_type 1 224 0 367 259 31 67 chr12 18381070 18381263 -125405192 - L1M4 LINE L1 -2876 3270 3085 508 328 104 55 chr12 18381712 18382407 -125404048 + L2 LINE L2 2470 3187 -85 280 303 30 38 chr12 18382789 18382921 -125403534 + MIR SINE MIR 82 212 -50 23 54 0 0 chr12 18382978 18383015 -125403440 + AT_rich Low_complexity Low_complexity 1 37 0 365 287 126 43 chr12 18383223 18383477 -125402978 - HAL1 LINE L1 -393 2114 1840 617 259 153 10 chr12 18383561 18383874 -125402581 - HAL1 LINE L1 -803 1704 1347 392 276 40 48 chr12 18383932 18384204 -125402251 - HAL1 LINE L1 -1249 1258 989 278 231 19 29 chr12 18384208 18384312 -125402143 + (TA)n Simple_repeat Simple_repeat 1 103 0 2430 186 32 12 chr12 18384312 18384811 -125401644 - Charlie1b DNA MER1_type 0 523 15 254 269 123 8 chr12 18384897 18385027 -125401428 - HAL1 LINE L1 -1553 954 810 1106 234 13 77 chr12 18385079 18385467 -125400988 - MER20B DNA MER1_type 0 783 421 2302 205 19 79 chr12 18385484 18386157 -125400298 - L1MA9 LINE L1 -38 6274 5642 854 230 42 121 chr12 18386157 18386562 -125399893 - MER20B DNA MER1_type -343 440 68 339 306 113 42 chr12 18386846 18387199 -125399256 - HAL1 LINE L1 -2129 378 1 548 299 93 50 chr12 18389076 18389377 -125397078 - LTR33A LTR ERVL -194 329 16 629 347 34 15 chr12 18389645 18389913 -125396542 - MERVL LTR ERVL -2160 3325 3053 2039 113 14 7 chr12 18390170 18390462 -125395993 - AluSx SINE Alu -18 294 1 1179 295 62 70 chr12 18390625 18390830 -125395625 + HERV16 LTR ERVL 100 305 -4691 2103 49 46 0 chr12 18390830 18391093 -125395362 + AluY SINE Alu 6 280 -31 321 47 0 0 chr12 18391095 18391138 -125395317 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 1179 295 62 70 chr12 18391138 18391781 -125394674 + HERV16 LTR ERVL 306 944 -4052 187 371 28 14 chr12 18392357 18392500 -125393955 + L2 LINE L2 2751 2895 -419 2590 164 19 8 chr12 18392602 18393085 -125393370 - L1PA16 LINE L1 -5 6161 5674 2042 127 15 26 chr12 18393644 18393983 -125392472 + MER1B DNA MER1_type 3 337 0 50 31 0 0 chr12 18394397 18394461 -125391994 + AT_rich Low_complexity Low_complexity 1 64 0 494 267 89 13 chr12 18394636 18394905 -125391550 - L2 LINE L2 0 3313 2980 216 0 0 0 chr12 18395627 18395651 -125390804 + (A)n Simple_repeat Simple_repeat 1 24 0 215 263 237 13 chr12 18396297 18396453 -125390002 - L2 LINE L2 -10 3303 3113 188 326 64 52 chr12 18396811 18396983 -125389472 - L2 LINE L2 -587 2727 2554 25 90 0 0 chr12 18397406 18397473 -125388982 + AT_rich Low_complexity Low_complexity 1 67 0 287 276 83 48 chr12 18397927 18398072 -125388383 + MIR SINE MIR 2 151 -111 288 339 0 8 chr12 18398201 18398319 -125388136 - L1M4 LINE L1 -3397 2749 2633 1867 221 60 13 chr12 18398347 18398814 -125387641 - L1MB5 LINE L1 0 6174 5686 3645 225 61 56 chr12 18398818 18399426 -125387029 + L1MA9 LINE L1 991 1595 -4953 1865 160 30 13 chr12 18399426 18399726 -125386729 - AluSx SINE Alu -7 305 1 3645 225 61 56 chr12 18399726 18402437 -125384018 + L1MA9 LINE L1 1595 6300 -248 3784 262 40 15 chr12 18402453 18403833 -125382622 + L1MB4 LINE L1 2482 3895 -2251 2921 179 27 63 chr12 18403816 18404953 -125381502 + L1MB4 LINE L1 4802 5918 -262 * 2097 138 32 6 chr12 18404953 18405300 -125381155 - THE1B LTR MaLR 0 364 9 1064 216 40 0 chr12 18405306 18405528 -125380927 + L1MB4 LINE L1 5910 6140 -40 739 245 59 81 chr12 18405566 18405902 -125380553 - L1MEc LINE L1 -3218 2997 2655 2412 62 0 3 chr12 18405902 18406209 -125380246 - AluY SINE Alu -5 306 1 739 245 59 81 chr12 18406209 18406475 -125379980 - L1MEc LINE L1 -3560 2655 2385 6609 84 3 0 chr12 18406475 18407613 -125378842 - L1PA8 LINE L1 0 6172 5024 739 245 59 81 chr12 18407613 18407627 -125378828 - L1MEc LINE L1 -3830 2385 2372 1152 196 61 61 chr12 18407627 18407923 -125378532 - AluJo SINE Alu -6 296 1 739 245 59 81 chr12 18407923 18408284 -125378171 - L1MEc LINE L1 -3843 2372 1911 2271 281 46 10 chr12 18408288 18409356 -125377099 - L1M4 LINE L1 -2179 3967 2862 9149 152 21 17 chr12 18410339 18411800 -125374655 + Tigger1 DNA MER2_type 1 1472 -946 1558 90 18 0 chr12 18411800 18412087 -125374368 + L1MA2 LINE L1 6077 6367 0 9149 152 21 17 chr12 18412087 18412209 -125374246 + Tigger1 DNA MER2_type 1472 1592 -826 703 198 0 0 chr12 18412210 18412331 -125374124 + FLAM_C SINE Alu 2 122 -21 706 108 0 0 chr12 18412332 18412434 -125374021 + Tigger1 DNA MER2_type 1580 1681 -737 3567 97 12 2 chr12 18412468 18412965 -125373490 - L1PA11 LINE L1 -8 6166 5665 1662 98 8 0 chr12 18412965 18413199 -125373256 + L1PA11 LINE L1 5418 5653 -521 4680 144 8 8 chr12 18413199 18413950 -125372505 + Tigger1 DNA MER2_type 1668 2418 0 1878 47 0 0 chr12 18415772 18416005 -125370450 - L1PA2 LINE L1 0 6155 5923 251 310 53 97 chr12 18417540 18417665 -125368790 - L2 LINE L2 -72 3200 3088 1932 140 64 17 chr12 18417665 18418023 -125368432 - THE1C LTR MaLR 0 375 1 251 310 53 97 chr12 18418023 18418123 -125368332 - L2 LINE L2 -184 3088 2985 578 126 10 0 chr12 18418130 18418233 -125368222 + (TG)n Simple_repeat Simple_repeat 2 105 0 312 349 64 40 chr12 18418376 18418625 -125367830 - L2 LINE L2 -453 2861 2607 194 246 16 33 chr12 18418770 18418831 -125367624 + MIR SINE MIR 166 225 -37 393 109 0 0 chr12 18420658 18420722 -125365733 + (TG)n Simple_repeat Simple_repeat 1 64 0 1189 177 189 0 chr12 18421133 18421381 -125365074 + AluJb SINE Alu 1 295 -17 414 364 69 46 chr12 18421424 18422108 -125364347 + L2 LINE L2 2356 3058 -214 273 308 143 0 chr12 18422283 18422374 -125364081 - L2 LINE L2 0 3313 3210 1118 225 78 19 chr12 18422393 18422664 -125363791 + MER77 LTR ERV1 316 602 -3 709 355 66 13 chr12 18422756 18423074 -125363381 + L2 LINE L2 2641 2975 -339 2395 231 28 53 chr12 18423154 18423790 -125362665 - MER21-int LTR ERV1 -1555 2636 2017 356 348 144 5 chr12 18423866 18424053 -125362402 - L2 LINE L2 -204 3068 2856 814 90 18 0 chr12 18424838 18424949 -125361506 + L1PA13 LINE L1 5550 5662 -506 2779 108 24 0 chr12 18424951 18425368 -125361087 + L1PA13 LINE L1 5729 6155 -8 930 311 101 28 chr12 18425615 18426265 -125360190 - L2 LINE L2 0 3313 2625 994 171 0 0 chr12 18426270 18426440 -125360015 + MLT2C1 LTR ERVL 5 174 -223 327 265 10 20 chr12 18426440 18426542 -125359913 + (TA)n Simple_repeat Simple_repeat 2 102 0 253 116 93 0 chr12 18426548 18426591 -125359864 + MLT2C1 LTR ERVL 349 395 -2 630 267 78 0 chr12 18426592 18426772 -125359683 - L2 LINE L2 -685 2629 2436 300 304 70 25 chr12 18426916 18427074 -125359381 + MIR SINE MIR 84 248 -14 2349 179 15 73 chr12 18427278 18427476 -125358979 + MLT2B1 LTR ERVL 6 214 -306 1624 181 23 13 chr12 18427476 18427785 -125358670 + AluJo SINE Alu 1 312 0 2349 179 15 73 chr12 18427785 18428133 -125358322 + MLT2B1 LTR ERVL 214 520 0 459 0 0 0 chr12 18430097 18430148 -125356307 + (TG)n Simple_repeat Simple_repeat 2 52 0 573 251 59 105 chr12 18430569 18430720 -125355735 + L1MEd LINE L1 569 725 -5585 1872 93 104 0 chr12 18430720 18430990 -125355465 + AluSx SINE Alu 1 298 -14 573 251 59 105 chr12 18430990 18431108 -125355347 + L1MEd LINE L1 725 847 -5463 2147 113 0 10 chr12 18431108 18431409 -125355046 + AluSx SINE Alu 1 298 -14 573 251 59 105 chr12 18431409 18432054 -125354401 + L1MEd LINE L1 847 1497 -4813 333 314 133 9 chr12 18432149 18432359 -125354096 + L1MEd LINE L1 2119 2354 -3775 364 220 17 34 chr12 18432564 18432741 -125353714 + (TA)n Simple_repeat Simple_repeat 1 174 0 1310 277 99 39 chr12 18432741 18433801 -125352654 + L1MEd LINE L1 2638 3761 -2368 621 266 47 70 chr12 18433844 18434145 -125352310 - MER21B LTR ERV1 -149 714 421 413 219 26 73 chr12 18434154 18434305 -125352150 + L1MEd LINE L1 3805 3948 -2181 255 266 184 13 chr12 18434822 18434943 -125351512 - MIR SINE MIR -58 150 19 4198 195 41 21 chr12 18435645 18436481 -125349974 - MER21B LTR ERV1 -9 854 3 198 253 121 12 chr12 18437376 18437459 -125348996 + MIR SINE MIR 166 257 -5 27 62 0 0 chr12 18438731 18438779 -125347676 + AT_rich Low_complexity Low_complexity 1 48 0 224 229 12 48 chr12 18439060 18439143 -125347312 + GA-rich Low_complexity Low_complexity 1 80 0 184 158 0 79 chr12 18439826 18439864 -125346591 - L2 LINE L2 -37 3235 3201 399 21 0 0 chr12 18439900 18439948 -125346507 + (CA)n Simple_repeat Simple_repeat 2 49 0 302 335 145 47 chr12 18440297 18441061 -125345394 - L2 LINE L2 -649 2665 1827 318 283 94 31 chr12 18441456 18441615 -125344840 + MIR SINE MIR 17 185 -77 285 75 0 0 chr12 18443247 18443287 -125343168 + (CA)n Simple_repeat Simple_repeat 2 41 0 2178 104 3 3 chr12 18443952 18444250 -125342205 - AluSg SINE Alu -12 298 1 1356 265 49 15 chr12 18444473 18444884 -125341571 + MER110 LTR ERV1 46 470 -21 650 289 33 0 chr12 18445187 18445367 -125341088 + MIR SINE MIR 71 256 -6 396 0 0 0 chr12 18445958 18446002 -125340453 + (CA)n Simple_repeat Simple_repeat 2 45 0 446 49 16 0 chr12 18447701 18447762 -125338693 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 446 322 74 37 chr12 18449111 18449518 -125336937 - L1MC4a LINE L1 -1843 5965 5544 194 343 181 19 chr12 18449687 18449792 -125336663 - L2 LINE L2 -9 3263 3142 1176 244 125 13 chr12 18449927 18450390 -125336065 - HAL1 LINE L1 -688 1819 1305 2010 218 94 13 chr12 18450392 18450942 -125335513 + MER97b DNA MER1_type? 4 598 -455 222 229 61 8 chr12 18450955 18451086 -125335369 + (TA)n Simple_repeat Simple_repeat 1 138 0 243 88 0 0 chr12 18451100 18451134 -125335321 + (TG)n Simple_repeat Simple_repeat 2 35 0 203 182 55 0 chr12 18451276 18451331 -125335124 + (TA)n Simple_repeat Simple_repeat 2 59 0 270 340 42 46 chr12 18451366 18451672 -125334783 - HAL1 LINE L1 -1551 956 652 351 291 69 87 chr12 18451922 18452197 -125334258 - HAL1 LINE L1 -2233 274 5 21 36 0 0 chr12 18452420 18452448 -125334007 + AT_rich Low_complexity Low_complexity 1 28 0 579 244 77 6 chr12 18452777 18452945 -125333510 - MIR SINE MIR -16 246 67 1316 270 88 17 chr12 18452964 18453382 -125333073 - LTR50 LTR ERVL -7 788 341 2730 10 0 3 chr12 18454130 18454436 -125332019 + AluYa5 SINE Alu 1 305 -6 197 328 16 0 chr12 18454713 18454777 -125331678 + L2 LINE L2 3249 3313 0 355 299 0 41 chr12 18455890 18455987 -125330468 + L2 LINE L2 3221 3313 0 318 377 62 36 chr12 18455998 18456467 -125329988 - L2 LINE L2 -869 2445 1965 308 326 132 16 chr12 18456807 18457065 -125329390 - L2 LINE L2 -222 3091 2804 190 353 98 0 chr12 18458548 18458650 -125327805 + L2 LINE L2 2553 2664 -650 11620 63 3 0 chr12 18458936 18461202 -125325253 - L1PA6 LINE L1 -13 6141 3866 243 339 156 0 chr12 18461571 18461680 -125324775 + L2 LINE L2 3180 3305 -8 904 264 25 21 chr12 18463190 18463425 -125323030 + MIR SINE MIR 27 262 0 204 188 0 0 chr12 18464836 18464868 -125321587 + (CA)n Simple_repeat Simple_repeat 1 32 0 249 211 0 0 chr12 18465573 18465630 -125320825 + T-rich Low_complexity Low_complexity 1 57 0 36 0 0 0 chr12 18466131 18466167 -125320288 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr12 18467093 18467119 -125319336 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr12 18467276 18467297 -125319158 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 18468902 18468923 -125317532 + AT_rich Low_complexity Low_complexity 1 21 0 253 252 238 7 chr12 18470104 18470247 -125316208 - MER104 DNA Tc2 -4 176 1 237 159 0 0 chr12 18470375 18470419 -125316036 + (TA)n Simple_repeat Simple_repeat 1 44 0 281 307 11 0 chr12 18470530 18470618 -125315837 + (CATATA)n Simple_repeat Simple_repeat 3 91 0 22 56 0 0 chr12 18470694 18470730 -125315725 + AT_rich Low_complexity Low_complexity 1 36 0 248 365 75 45 chr12 18471934 18472293 -125314162 + L2 LINE L2 2257 2626 -688 204 53 0 53 chr12 18472427 18472465 -125313990 + (TTTTTA)n Simple_repeat Simple_repeat 1 180 0 2494 31 0 3 chr12 18472465 18472753 -125313702 - AluY SINE Alu 0 325 1 244 372 70 6 chr12 18472894 18473050 -125313405 + L2 LINE L2 2890 3055 -217 213 329 29 0 chr12 18473475 18473545 -125312910 - L2 LINE L2 -799 2515 2444 502 264 96 0 chr12 18473751 18473876 -125312579 - MER58A DNA MER1_type 0 140 4 235 299 105 90 chr12 18473877 18474355 -125312100 - L2 LINE L2 -1068 2246 1762 6252 152 25 20 chr12 18474371 18476636 -125309819 + L1MA5A LINE L1 4016 6292 -5 21 0 0 0 chr12 18477087 18477108 -125309347 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr12 18477258 18477295 -125309160 + AT_rich Low_complexity Low_complexity 1 37 0 890 238 38 33 chr12 18477731 18477971 -125308484 - MIR SINE MIR -10 252 12 24 32 0 0 chr12 18479829 18479860 -125306595 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 18479889 18479910 -125306545 + AT_rich Low_complexity Low_complexity 1 21 0 558 323 205 12 chr12 18480312 18480712 -125305743 + L3 LINE CR1 1094 1570 -7 445 295 34 0 chr12 18480838 18480987 -125305468 - MER103 DNA DNA -3 163 10 21 36 0 0 chr12 18481108 18481136 -125305319 + AT_rich Low_complexity Low_complexity 1 28 0 902 299 28 38 chr12 18481225 18481619 -125304836 - Tigger8 DNA MER2_type -167 499 110 195 162 27 0 chr12 18482899 18482936 -125303519 - L2 LINE L2 -1096 2218 2181 259 341 83 39 chr12 18482987 18483216 -125303239 + L2 LINE L2 2549 2787 -527 3593 170 60 18 chr12 18483269 18483982 -125302473 + Tigger2 DNA MER2_type 2 744 -1974 1555 135 12 4 chr12 18484047 18484299 -125302156 + Tigger2 DNA MER2_type 2463 2716 -2 276 265 0 29 chr12 18484681 18484749 -125301706 + L2 LINE L2 3247 3312 -1 32 26 0 0 chr12 18485105 18485144 -125301311 + AT_rich Low_complexity Low_complexity 1 39 0 853 209 26 68 chr12 18486131 18486365 -125300090 + MER58A DNA MER1_type 1 224 0 321 269 135 43 chr12 18486430 18486571 -125299884 + MIR SINE MIR 83 236 -26 230 0 33 0 chr12 18486887 18486917 -125299538 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 318 280 120 20 chr12 18487578 18487678 -125298777 + L2 LINE L2 3203 3312 -1 1880 200 31 45 chr12 18488193 18488638 -125297817 - L1MCa LINE L1 -5945 481 43 1907 134 0 33 chr12 18489617 18489922 -125296533 + AluSx SINE Alu 1 295 -17 5394 255 46 64 chr12 18490024 18491841 -125294614 + L1MB7 LINE L1 15 1908 -5230 1691 177 0 3 chr12 18491841 18492162 -125294293 + AluSx SINE Alu 1 320 0 5394 255 46 64 chr12 18492162 18492943 -125293512 + L1MB7 LINE L1 1908 2702 -4436 6280 246 68 44 chr12 18493224 18493617 -125292838 + L1MB7 LINE L1 2762 3144 -3813 686 112 0 0 chr12 18493617 18493724 -125292731 + L1MA1 LINE L1 6193 6299 -3 6280 246 68 44 chr12 18493724 18495912 -125290543 + L1MB7 LINE L1 3144 5376 -1581 941 154 11 0 chr12 18495912 18496087 -125290368 + L1MA4 LINE L1 6113 6289 -11 6280 246 68 44 chr12 18496087 18496397 -125290058 + L1MB7 LINE L1 5376 5677 -1280 10430 154 30 24 chr12 18496397 18499420 -125287035 - L1MA3 LINE L1 -8 7716 4670 2031 167 60 32 chr12 18499425 18499944 -125286511 - MLT2A2 LTR ERVL 0 554 1 20106 190 28 6 chr12 18499944 18504487 -125281968 - L1MA3 LINE L1 -2900 4665 17 4078 204 35 9 chr12 18504493 18504915 -125281540 + L1MB7 LINE L1 5659 6068 -927 339 85 0 0 chr12 18504915 18504962 -125281493 + (TG)n Simple_repeat Simple_repeat 2 48 0 4078 204 35 9 chr12 18504962 18505848 -125280607 + L1MB7 LINE L1 6068 6995 0 21 0 0 0 chr12 18505848 18505869 -125280586 + AT_rich Low_complexity Low_complexity 1 21 0 349 276 30 81 chr12 18505977 18506274 -125280181 + L1M4c LINE L1 1364 1839 -904 200 184 0 0 chr12 18506497 18506535 -125279920 + (TG)n Simple_repeat Simple_repeat 1 38 0 345 125 0 0 chr12 18506759 18506815 -125279640 + (TG)n Simple_repeat Simple_repeat 2 57 0 588 301 167 30 chr12 18507039 18507441 -125279014 + LTR16A1 LTR ERVL 1 457 0 731 343 48 26 chr12 18508443 18508860 -125277595 + HERV16 LTR ERVL 1092 1517 -3479 1120 331 59 33 chr12 18508908 18509724 -125276731 + HERV16 LTR ERVL 1719 2561 -2670 259 191 29 15 chr12 18509987 18510055 -125276400 + (CA)n Simple_repeat Simple_repeat 2 70 0 24 53 0 0 chr12 18510062 18510100 -125276355 + AT_rich Low_complexity Low_complexity 1 38 0 1739 171 11 57 chr12 18510712 18511062 -125275393 - MER1B DNA MER1_type -1 336 3 802 130 135 5 chr12 18511406 18511598 -125274857 - L1 LINE L1 -1601 4545 4329 * 1515 201 25 6 chr12 18511595 18511913 -125274542 + L1 LINE L1 4536 4859 -1287 * 2185 260 25 58 chr12 18511909 18513816 -125272639 - L1M2 LINE L1 -4059 2789 1222 1975 177 11 64 chr12 18515312 18515748 -125270707 - MLT2D LTR ERVL 0 414 2 214 423 66 0 chr12 18516819 18516956 -125269499 + MIR3 SINE MIR 9 154 -54 1935 159 0 0 chr12 18517449 18517745 -125268710 - AluSx SINE Alu -16 296 1 209 269 0 0 chr12 18517808 18517860 -125268595 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 778 244 100 35 chr12 18518017 18518336 -125268119 - L1ME1 LINE L1 -1 6165 5826 664 253 32 61 chr12 18518339 18518715 -125267740 - L1ME1 LINE L1 -1462 4684 4320 * 3152 191 27 45 chr12 18518695 18519443 -125267012 - L1MA10 LINE L1 -14 6320 5587 9609 217 39 61 chr12 18519446 18520644 -125265811 - L1P5 LINE L1 -473 6386 5163 186 43 0 0 chr12 18520644 18520667 -125265788 + (TTG)n Simple_repeat Simple_repeat 2 24 0 9609 217 39 61 chr12 18520667 18521477 -125264978 - L1P5 LINE L1 -1696 5163 4337 2138 103 23 7 chr12 18521477 18521778 -125264677 - AluSc SINE Alu 0 309 4 9609 217 39 61 chr12 18521778 18522382 -125264073 - L1P5 LINE L1 -2522 4337 3721 1804 172 0 23 chr12 18522382 18522685 -125263770 - AluJb SINE Alu -16 296 1 9609 217 39 61 chr12 18522685 18523737 -125262718 - L1P5 LINE L1 -3138 3721 2648 1615 112 0 0 chr12 18523737 18523983 -125262472 - AluSg/x SINE Alu 0 316 71 9609 217 39 61 chr12 18523983 18525427 -125261028 - L1P5 LINE L1 -4211 2648 1346 293 279 0 0 chr12 18525432 18525511 -125260944 - L1P5 LINE L1 -5299 1550 1472 329 399 29 78 chr12 18525529 18525810 -125260645 - L1M2 LINE L1 -5736 1113 847 332 316 58 19 chr12 18526215 18526370 -125260085 - L1P5 LINE L1 -5244 1595 1435 677 376 28 34 chr12 18526563 18526900 -125259555 - L1P5 LINE L1 -6320 519 184 1014 30 0 15 chr12 18526900 18527033 -125259422 - L1PA5 LINE L1 0 6154 6024 677 376 28 34 chr12 18527033 18527163 -125259292 - L1P5 LINE L1 -6655 184 55 260 186 0 0 chr12 18527183 18527226 -125259229 + tRNA-Met-e tRNA tRNA 1 43 -32 1667 257 96 70 chr12 18527228 18528342 -125258113 - L1M4 LINE L1 -1942 4204 3033 2180 113 0 10 chr12 18528342 18528643 -125257812 - AluSg1 SINE Alu -11 298 1 1667 257 96 70 chr12 18528643 18529146 -125257309 - L1M4 LINE L1 -3113 3033 2545 584 159 148 39 chr12 18529164 18529346 -125257109 - L1MA9 LINE L1 -7 6305 6104 487 290 76 20 chr12 18529359 18529662 -125256793 - L1MEc LINE L1 -5579 817 498 213 39 0 0 chr12 18529762 18529788 -125256667 + (TC)n Simple_repeat Simple_repeat 1 26 0 509 313 70 9 chr12 18529871 18530101 -125256354 - L1MEc LINE L1 -6117 279 36 366 190 13 0 chr12 18531588 18531667 -125254788 + L1MA4A LINE L1 6201 6280 -23 373 297 22 0 chr12 18531755 18531846 -125254609 - L2 LINE L2 -2 3270 3178 330 26 0 0 chr12 18534793 18534832 -125251623 + (CA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chr12 18535281 18535306 -125251149 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr12 18536271 18536293 -125250162 + AT_rich Low_complexity Low_complexity 1 22 0 404 309 7 37 chr12 18537981 18538117 -125248338 - L2 LINE L2 0 3313 3182 2004 112 26 3 chr12 18538127 18538430 -125248025 + AluSg SINE Alu 1 310 0 208 372 54 20 chr12 18538839 18538987 -125247468 - L2 LINE L2 -908 2406 2254 414 268 0 0 chr12 18538987 18539099 -125247356 + L1MC1 LINE L1 4272 4383 -1763 * 5409 193 13 16 chr12 18539092 18539613 -125246842 + L1MC1 LINE L1 4602 5123 -1210 1352 101 64 14 chr12 18539613 18539831 -125246624 - MER30 DNA MER1_type -1 229 1 5409 193 13 16 chr12 18539831 18540958 -125245497 + L1MC1 LINE L1 5123 6239 -94 275 291 233 35 chr12 18540958 18541271 -125245184 - L2 LINE L2 -1077 2237 1863 196 151 19 19 chr12 18542472 18542525 -125243930 + CT-rich Low_complexity Low_complexity 4 56 0 2099 134 10 0 chr12 18542526 18542832 -125243623 - AluSg SINE Alu -1 309 1 358 319 21 7 chr12 18542832 18542976 -125243479 + CT-rich Low_complexity Low_complexity 2 147 0 1236 198 30 106 chr12 18543022 18543427 -125243028 + MLT1A2 LTR MaLR 1 374 0 242 266 44 80 chr12 18544862 18544975 -125241480 - L2 LINE L2 0 3313 3205 370 304 74 89 chr12 18545006 18545332 -125241123 + MLT1K LTR MaLR 262 582 -6 25 0 0 0 chr12 18545434 18545459 -125240996 + AT_rich Low_complexity Low_complexity 1 25 0 944 127 14 15 chr12 18546364 18547107 -125239348 - HSATII Satellite Satellite -53 742 1 216 269 25 34 chr12 18547183 18547302 -125239153 + (TTAAA)n Simple_repeat Simple_repeat 4 121 0 * 241 336 0 26 chr12 18547217 18547330 -125239125 - HSATII Satellite Satellite -13 157 48 22 0 0 0 chr12 18548999 18549021 -125237434 + AT_rich Low_complexity Low_complexity 1 22 0 256 125 0 0 chr12 18549035 18549075 -125237380 + L1P3 LINE L1 1461 1500 -4961 25 31 0 0 chr12 18549502 18549534 -125236921 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 18549635 18549665 -125236790 + AT_rich Low_complexity Low_complexity 1 30 0 941 188 74 10 chr12 18549823 18550025 -125236430 - MER20 DNA MER1_type -4 215 1 6841 158 21 11 chr12 18550107 18551368 -125235087 - L1P LINE L1 -831 5315 4055 5501 93 15 48 chr12 18551367 18552228 -125234227 + L1PA12 LINE L1 5336 6168 0 * 1639 212 33 12 chr12 18552842 18553177 -125233278 + MER2 DNA MER2_type 1 342 -3 1897 135 18 0 chr12 18553227 18553509 -125232946 - AluSx SINE Alu -12 300 14 2319 94 3 0 chr12 18553665 18553973 -125232482 + AluY SINE Alu 1 309 -2 2450 263 75 54 chr12 18554264 18555939 -125230516 + L1M4 LINE L1 2804 4514 -1632 1391 288 31 27 chr12 18555939 18556007 -125230448 + HERVL40 LTR ERVL 3774 3840 -1690 2324 70 10 0 chr12 18556007 18556307 -125230148 - AluY SINE Alu -8 303 1 1391 288 31 27 chr12 18556307 18556721 -125229734 + HERVL40 LTR ERVL 3840 4258 -1272 1651 148 39 36 chr12 18556749 18557080 -125229375 + THE1C LTR MaLR 21 352 -23 5724 216 34 24 chr12 18557207 18560041 -125226414 - L1 LINE L1 -2711 4497 1614 1919 266 31 62 chr12 18560074 18560716 -125225739 - L1 LINE L1 -6567 642 21 628 173 70 0 chr12 18560746 18560893 -125225562 + LTR40b LTR ERVL 327 462 0 1595 270 77 24 chr12 18560893 18561224 -125225231 - L1MDa LINE L1 -2026 4189 3877 2132 88 3 50 chr12 18561224 18561541 -125224914 - AluSp SINE Alu -9 304 3 1595 270 77 24 chr12 18561541 18563463 -125222992 - L1MDa LINE L1 -2338 3877 1306 303 284 13 19 chr12 18563605 18563760 -125222695 - L1MDa LINE L1 -5230 1166 1013 986 179 19 24 chr12 18563869 18564076 -125222379 - L1M3 LINE L1 -626 5793 5588 291 30 0 0 chr12 18564076 18564109 -125222346 + U6 snRNA snRNA 1 33 -74 9109 233 76 37 chr12 18564109 18566485 -125219970 - L1M3 LINE L1 -782 5600 3317 1517 188 33 0 chr12 18566485 18566757 -125219698 + AluSx SINE Alu 1 281 -31 9109 233 76 37 chr12 18566757 18566775 -125219680 - L1M3 LINE L1 -3065 3317 3301 186 43 0 0 chr12 18566775 18566798 -125219657 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 9109 233 76 37 chr12 18566798 18569478 -125216977 - L1M3 LINE L1 -3081 3301 306 236 156 0 0 chr12 18569580 18569625 -125216830 - LTR66 LTR ERVL -172 438 394 228 174 0 0 chr12 18569587 18569633 -125216822 + LTR66 LTR ERVL 394 439 -171 * 183 80 0 0 chr12 18569637 18569662 -125216793 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 1049 252 50 27 chr12 18569664 18570001 -125216454 - MLT2D LTR ERVL -69 345 1 1244 235 50 4 chr12 18570001 18570282 -125216173 - L1M3 LINE L1 -6075 309 16 2413 137 3 3 chr12 18570319 18570683 -125215772 + THE1B LTR MaLR 1 364 0 716 23 0 0 chr12 18570755 18570843 -125215612 + L1PA3 LINE L1 6068 6155 0 1096 251 50 56 chr12 18571380 18571758 -125214697 + MLT1B LTR MaLR 13 388 -2 302 344 45 25 chr12 18572854 18573011 -125213444 + MIR SINE MIR 101 260 -2 32 43 0 0 chr12 18573511 18573557 -125212898 + AT_rich Low_complexity Low_complexity 1 46 0 196 151 19 19 chr12 18573596 18573649 -125212806 + GA-rich Low_complexity Low_complexity 4 56 0 482 330 59 17 chr12 18575044 18575280 -125211175 - L2 LINE L2 -212 3101 2856 468 299 164 5 chr12 18575301 18575515 -125210940 - LTR16A1 LTR ERVL -30 427 180 320 372 28 7 chr12 18575689 18575834 -125210621 - L2 LINE L2 -602 2712 2565 2362 75 0 10 chr12 18576451 18576758 -125209697 + AluY SINE Alu 1 304 -7 378 0 0 0 chr12 18579100 18579142 -125207313 + (TG)n Simple_repeat Simple_repeat 1 42 0 2210 109 10 0 chr12 18579176 18579470 -125206985 - AluSx SINE Alu -15 297 1 440 126 11 0 chr12 18579631 18579718 -125206737 + (TC)n Simple_repeat Simple_repeat 1 88 0 1034 99 19 0 chr12 18581357 18581519 -125204936 + L1PA12 LINE L1 5883 6047 -121 258 386 79 7 chr12 18581642 18581782 -125204673 + L2 LINE L2 3121 3270 -2 28 0 0 0 chr12 18581825 18581853 -125204602 + AT_rich Low_complexity Low_complexity 1 28 0 226 256 237 38 chr12 18582611 18582822 -125203633 - LTR16C LTR ERVL -79 412 160 354 23 0 0 chr12 18584158 18584201 -125202254 + (TG)n Simple_repeat Simple_repeat 1 43 0 2238 242 107 9 chr12 18584213 18585005 -125201450 - MER63C DNA MER1_type -14 916 47 40 21 0 0 chr12 18585064 18585111 -125201344 + AT_rich Low_complexity Low_complexity 1 47 0 41992 42 1 2 chr12 18585215 18591404 -125195051 + L1PA3 LINE L1 9 6190 0 3233 149 76 18 chr12 18592247 18592864 -125193591 - MER39B LTR ERV1 0 653 1 327 364 115 16 chr12 18593380 18593754 -125192701 - L1ME LINE L1 -463 5699 5289 3939 146 46 60 chr12 18594336 18595347 -125191108 + pTR5 LTR ERV1 741 2029 -409 241 277 11 0 chr12 18595347 18595441 -125191014 + LTR30 LTR ERV1 548 642 -80 1456 90 0 9 chr12 18595444 18595667 -125190788 + pTR5 LTR ERV1 172 392 -2046 584 291 45 39 chr12 18595672 18596005 -125190450 - L1ME LINE L1 -1440 4706 4372 392 316 91 19 chr12 18596183 18596392 -125190063 - L1ME LINE L1 -1817 4329 4106 1486 167 51 4 chr12 18597182 18597457 -125188998 + Ricksha_b DNA DNA 1 288 -966 2903 140 32 13 chr12 18597476 18597841 -125188614 - L1PB3 LINE L1 0 6154 5774 408 82 0 0 chr12 18597841 18597902 -125188553 + (TG)n Simple_repeat Simple_repeat 2 62 0 2903 140 32 13 chr12 18597902 18598065 -125188390 - L1PB3 LINE L1 -380 5774 5616 2945 128 66 53 chr12 18598065 18598627 -125187828 + LTR12 LTR ERV1 13 581 -133 5540 197 51 27 chr12 18598627 18600331 -125186124 - L1PBb LINE L1 -2315 3888 2227 428 123 0 0 chr12 18600331 18600404 -125186051 - MER41B LTR ERV1 -81 554 482 5540 197 51 27 chr12 18600404 18602400 -125184055 - L1PBb LINE L1 -3976 2227 18 3206 286 39 43 chr12 18602399 18604010 -125182445 - L1PBa LINE L1 -5256 1607 3 * 5278 159 21 12 chr12 18604033 18604830 -125181625 + Ricksha_b DNA DNA 274 1082 -1772 2463 62 0 7 chr12 18604830 18605136 -125181319 - AluY SINE Alu -7 304 1 5278 159 21 12 chr12 18605136 18605304 -125181151 + Ricksha_b DNA DNA 1082 1247 -7 230 222 56 0 chr12 18605523 18605577 -125180878 - ORSL DNA AcHobo -218 57 1 800 271 28 0 chr12 18605784 18606002 -125180453 + MER58A DNA MER1_type 1 224 0 301 336 168 0 chr12 18606889 18607038 -125179417 + MIR3 SINE MIR 28 201 -7 272 175 16 0 chr12 18607200 18607263 -125179192 + CT-rich Low_complexity Low_complexity 2 65 0 1367 163 117 72 chr12 18608788 18609217 -125177238 - LTR7 LTR ERV1 -2 448 1 2429 69 45 13 chr12 18609217 18609595 -125176860 - HERVH LTR ERV1 0 7713 7324 1039 148 84 5 chr12 18609595 18609797 -125176658 - HERVH LTR ERV1 -1894 5819 5602 4081 148 0 1 chr12 18609804 18610466 -125175989 - HERVH LTR ERV1 -2564 5149 4489 3179 116 4 8 chr12 18610461 18610972 -125175483 - HERVH LTR ERV1 -3713 4000 3492 * 854 128 20 0 chr12 18610962 18611110 -125175345 - HERVH LTR ERV1 -4423 3290 3140 * 2410 110 0 10 chr12 18611104 18611487 -125174968 - HERVH LTR ERV1 -4726 2987 2609 * 15437 83 49 8 chr12 18611480 18613827 -125172628 - HERVH LTR ERV1 -5269 2444 1 1451 135 123 79 chr12 18613829 18614258 -125172197 - LTR7 LTR ERV1 -2 448 1 1691 165 43 4 chr12 18614383 18614662 -125171793 - AluJb SINE Alu -22 290 1 1706 207 114 79 chr12 18614803 18615567 -125170888 + LTR1B LTR ERV1 1 983 -37 471 316 48 19 chr12 18615950 18616182 -125170273 + MIR SINE MIR 22 260 -2 217 256 103 86 chr12 18616216 18616333 -125170122 + L2 LINE L2 3154 3272 0 274 365 66 17 chr12 18616479 18616660 -125169795 + MIR3 SINE MIR 16 205 -3 22 35 0 0 chr12 18618042 18618071 -125168384 + AT_rich Low_complexity Low_complexity 1 29 0 1521 261 53 34 chr12 18618712 18619218 -125167237 - LTR40a LTR ERVL -1 518 3 186 362 63 39 chr12 18619760 18619887 -125166568 + MIR3 SINE MIR 3 132 -76 23 0 0 0 chr12 18620527 18620550 -125165905 + AT_rich Low_complexity Low_complexity 1 23 0 246 62 0 0 chr12 18620550 18620582 -125165873 + (TA)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr12 18620594 18620618 -125165837 + AT_rich Low_complexity Low_complexity 1 24 0 237 339 91 0 chr12 18621399 18621520 -125164935 - MIR SINE MIR -78 184 53 293 309 0 21 chr12 18621621 18621715 -125164740 - MIR SINE MIR -12 250 159 417 278 191 6 chr12 18621739 18621912 -125164543 + MIR SINE MIR 32 236 -26 209 311 14 27 chr12 18622665 18622739 -125163716 - MIR SINE MIR -182 80 8 2482 55 0 0 chr12 18622778 18623068 -125163387 - AluY SINE Alu -21 290 1 839 324 98 8 chr12 18623740 18624117 -125162338 + LTR16B LTR ERVL 1 411 -53 275 312 21 28 chr12 18624306 18624447 -125162008 + MLT1H LTR MaLR 141 280 -269 243 246 3 0 chr12 18624568 18624635 -125161820 + MLT1H LTR MaLR 475 549 0 699 217 0 92 chr12 18625377 18625617 -125160838 - MER20 DNA MER1_type 0 219 2 1497 225 74 0 chr12 18625678 18626016 -125160439 + MLT1A1 LTR MaLR 1 363 -2 28 0 0 0 chr12 18627211 18627239 -125159216 + AT_rich Low_complexity Low_complexity 1 28 0 3288 114 28 2 chr12 18627352 18627850 -125158605 - MER75 DNA T2_type -3 511 1 316 347 34 0 chr12 18627852 18627999 -125158456 + L1M3c LINE L1 1228 1379 -4762 385 224 0 0 chr12 18628022 18628098 -125158357 + MLT1A1 LTR MaLR 1 76 -320 1774 174 30 75 chr12 18628099 18628536 -125157919 + MSTB1 LTR MaLR 1 417 -15 848 187 43 135 chr12 18628551 18628877 -125157578 + MLT1A1 LTR MaLR 70 365 0 242 348 30 6 chr12 18629286 18629450 -125157005 + L1MEc LINE L1 1624 1791 -4605 319 291 0 80 chr12 18629675 18629826 -125156629 + L1MEc LINE L1 2158 2296 -4100 249 289 50 75 chr12 18629862 18630264 -125156191 + L1MEc LINE L1 2293 2684 -3531 492 251 242 6 chr12 18630312 18630647 -125155808 + L1MEc LINE L1 2805 3218 -2997 316 312 74 50 chr12 18630675 18631172 -125155283 + L1MEc LINE L1 3309 3817 -2398 717 259 7 0 chr12 18631194 18631337 -125155118 - MER82 DNA MER2_type -20 633 490 1743 131 115 35 chr12 18631367 18631681 -125154774 - MER1B DNA MER1_type 0 339 1 * 1769 231 39 18 chr12 18631681 18632116 -125154339 - MER82 DNA MER2_type -209 444 1 488 249 92 29 chr12 18632988 18633161 -125153294 - MLT1J1 LTR MaLR -246 200 17 2249 88 3 19 chr12 18633976 18634283 -125152172 - AluY SINE Alu -9 302 1 274 274 91 89 chr12 18635324 18635740 -125150715 + MLT1J LTR MaLR 1 417 -94 19693 52 27 2 chr12 18635819 18639102 -125147353 + L1PA5 LINE L1 2838 6154 0 26 0 0 0 chr12 18639102 18639128 -125147327 + AT_rich Low_complexity Low_complexity 1 26 0 799 250 60 116 chr12 18639614 18639994 -125146461 - L2 LINE L2 -762 2552 2194 470 305 102 80 chr12 18640455 18640617 -125145838 - L1MEd LINE L1 -5286 833 676 2069 99 0 14 chr12 18640617 18640911 -125145544 - AluSg SINE Alu -18 292 3 470 305 102 80 chr12 18640911 18641210 -125145245 - L1MEd LINE L1 -5443 676 362 2082 164 11 6 chr12 18642124 18642484 -125143971 - MLT1A1 LTR MaLR 0 365 4 216 308 15 0 chr12 18644309 18644374 -125142081 + MIR SINE MIR 4 69 -193 1982 176 12 0 chr12 18646089 18646419 -125140036 + MER7A DNA MER2_type 2 333 -13 355 259 0 12 chr12 18647024 18647105 -125139350 - L2 LINE L2 -4 3309 3230 580 306 24 60 chr12 18648706 18649075 -125137380 + MARNA DNA Mariner 24 379 -207 203 59 0 29 chr12 18649164 18649198 -125137257 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 604 255 20 7 chr12 18649199 18649348 -125137107 - FAM SINE Alu -34 151 1 399 289 44 63 chr12 18649649 18649808 -125136647 - MIR3 SINE MIR -14 194 39 913 151 0 6 chr12 18650250 18650525 -125135930 - AluSc SINE Alu 0 425 152 828 93 8 0 chr12 18650529 18650647 -125135808 + AluSq/x SINE Alu 15 133 -180 1641 247 3 6 chr12 18650701 18651065 -125135390 - MLT1A1 LTR MaLR 0 365 3 1196 350 45 38 chr12 18651672 18652326 -125134129 - L2 LINE L2 -308 3005 2341 1980 209 35 0 chr12 18652326 18652728 -125133727 - MER47B DNA MER2_type -1 417 2 1196 350 45 38 chr12 18652728 18652828 -125133627 - L2 LINE L2 -972 2341 2243 357 332 104 26 chr12 18652926 18653233 -125133222 - L2 LINE L2 -1343 1971 1641 420 188 10 62 chr12 18653631 18653709 -125132746 - 5S rRNA rRNA -30 91 17 1959 152 52 17 chr12 18653709 18654071 -125132384 + THE1C LTR MaLR 1 375 0 420 188 10 62 chr12 18654071 18654088 -125132367 - 5S rRNA rRNA -104 17 1 187 254 0 51 chr12 18654268 18654327 -125132128 - MIR SINE MIR -103 159 104 25 0 0 0 chr12 18654559 18654584 -125131871 + AT_rich Low_complexity Low_complexity 1 25 0 256 300 20 87 chr12 18654782 18654932 -125131523 + L3 LINE CR1 123 262 -1315 338 322 154 7 chr12 18655842 18655991 -125130464 + MER5A DNA MER1_type 1 171 -18 1466 245 94 6 chr12 18655991 18656460 -125129995 - L1ME3A LINE L1 -17 6153 5644 844 245 53 39 chr12 18656466 18656846 -125129609 - MER67C LTR ERV1 -8 506 145 3379 188 59 9 chr12 18656858 18657599 -125128856 + L1 LINE L1 4461 5238 -908 787 176 35 0 chr12 18657600 18657742 -125128713 - MER67D LTR ERV1 -367 147 1 452 215 209 34 chr12 18657750 18657927 -125128528 - L1ME3A LINE L1 -528 5642 5435 332 299 76 21 chr12 18657934 18658225 -125128230 - L1ME3A LINE L1 -2170 3976 3670 454 242 0 0 chr12 18658262 18658353 -125128102 - U6 snRNA snRNA -16 91 1 204 135 0 0 chr12 18658420 18658457 -125127998 + (TCC)n Simple_repeat Simple_repeat 2 38 0 333 330 66 63 chr12 18659143 18659600 -125126855 - L2 LINE L2 -1292 2022 1565 359 290 22 65 chr12 18660627 18660765 -125125690 + MLT1J LTR MaLR 149 280 -231 1470 136 16 4 chr12 18661091 18661349 -125125106 + L1MA4 LINE L1 6034 6294 -6 776 138 109 14 chr12 18661482 18661620 -125124835 - FRAM SINE Alu -26 150 1 378 61 0 0 chr12 18662282 18662331 -125124124 + (A)n Simple_repeat Simple_repeat 1 49 0 200 290 75 32 chr12 18663533 18663626 -125122829 - MIR SINE MIR -92 170 74 303 268 107 42 chr12 18664340 18664508 -125121947 - L1MC/D LINE L1 -2256 5552 5374 207 167 0 0 chr12 18664963 18664999 -125121456 + (TG)n Simple_repeat Simple_repeat 1 36 0 207 206 48 0 chr12 18665205 18665268 -125121187 + T-rich Low_complexity Low_complexity 2 67 0 2472 160 29 35 chr12 18665481 18665852 -125120603 - L1MA8 LINE L1 -4 6287 5918 2031 163 9 0 chr12 18665852 18666196 -125120259 - MER7A DNA MER2_type 0 346 2 2472 160 29 35 chr12 18666196 18666343 -125120112 - L1MA8 LINE L1 -373 5918 5772 1313 261 50 2 chr12 18666343 18666825 -125119630 - L1M3c LINE L1 -4548 2550 2046 1062 200 9 14 chr12 18666832 18667052 -125119403 - AluJo SINE Alu -7 305 87 738 343 31 22 chr12 18667052 18667469 -125118986 - L1M3c LINE L1 -5156 2012 1592 2437 177 69 88 chr12 18667491 18668232 -125118223 - LTR8A LTR ERV1 0 727 1 2363 136 126 32 chr12 18668885 18668949 -125117506 - LTR10A LTR ERV1 -62 547 490 2380 73 7 0 chr12 18668949 18669252 -125117203 - AluSp SINE Alu -7 306 2 2363 136 126 32 chr12 18669252 18669686 -125116769 - LTR10A LTR ERV1 -119 490 2 274 137 20 20 chr12 18669709 18669760 -125116695 - LTR10B LTR ERV1 -496 51 1 604 284 49 18 chr12 18669981 18670266 -125116189 - L1MC/D LINE L1 -1524 4622 4329 509 155 39 19 chr12 18670266 18670416 -125116039 - AluJb SINE Alu 0 329 178 359 200 14 0 chr12 18670533 18670603 -125115852 + MLT2B3 LTR ERVL 1 71 -483 1847 210 89 59 chr12 18670694 18671166 -125115289 + MLT2B3 LTR ERVL 69 554 0 809 293 17 0 chr12 18671206 18671445 -125115010 + L1M4 LINE L1 3896 4138 -2008 355 245 9 19 chr12 18671466 18671572 -125114883 - L1MC/D LINE L1 -2667 3479 3375 * 399 268 16 22 chr12 18671569 18671752 -125114703 + L1M4 LINE L1 4143 4324 -1822 679 289 30 4 chr12 18671769 18672039 -125114416 - L1M4 LINE L1 -1538 5403 5127 354 23 0 0 chr12 18672044 18672087 -125114368 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1580 187 7 4 chr12 18672087 18672360 -125114095 - AluJb SINE Alu -28 284 11 928 266 94 52 chr12 18672360 18673618 -125112837 - L1MCc LINE L1 -3058 3883 2608 342 255 88 42 chr12 18673744 18673936 -125112519 - L1MCc LINE L1 -4670 2271 2071 1644 313 98 48 chr12 18674024 18675306 -125111149 - L1MCc LINE L1 -4887 1536 464 249 33 0 0 chr12 18675306 18675336 -125111119 + (T)n Simple_repeat Simple_repeat 1 30 0 1644 313 98 48 chr12 18675336 18675806 -125110649 - L1MCc LINE L1 -5959 464 19 1534 255 104 18 chr12 18676578 18677021 -125109434 - MLT1E1 LTR MaLR 0 654 174 331 338 48 61 chr12 18677409 18677621 -125108834 - L2 LINE L2 -285 3028 2815 3039 153 17 57 chr12 18677621 18678198 -125108257 - MLT2B3 LTR ERVL 0 554 1 331 338 48 61 chr12 18678198 18678446 -125108009 - L2 LINE L2 -498 2815 2575 26 0 0 0 chr12 18678555 18678581 -125107874 + AT_rich Low_complexity Low_complexity 1 26 0 411 322 155 47 chr12 18679771 18680215 -125106240 + LTR33 LTR ERVL 2 493 -28 404 350 120 43 chr12 18681147 18681521 -125104934 + L2 LINE L2 2898 3300 -13 680 203 75 43 chr12 18681616 18681803 -125104652 - MLT2D LTR ERVL 0 414 222 4090 186 32 66 chr12 18731803 18733027 -125053428 - L1P5 LINE L1 -592 5559 4398 234 0 0 0 chr12 18733027 18733053 -125053402 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 4090 186 32 66 chr12 18733053 18733306 -125053149 - L1P5 LINE L1 -1753 4398 4138 26 0 0 0 chr12 18733357 18733383 -125053072 + AT_rich Low_complexity Low_complexity 1 26 0 206 139 28 0 chr12 18733669 18733705 -125052750 + (ATG)n Simple_repeat Simple_repeat 3 39 0 3694 25 2 0 chr12 18735933 18736375 -125050080 + L1PA2 LINE L1 5712 6154 -1 682 274 62 59 chr12 18737362 18737701 -125048754 + MLT1K LTR MaLR 227 566 -22 334 333 0 10 chr12 18738099 18738195 -125048260 - MIR SINE MIR -150 112 18 1811 163 38 27 chr12 18738914 18739283 -125047172 + THE1C LTR MaLR 1 373 -2 437 261 87 81 chr12 18739513 18739943 -125046512 + MLT1E2 LTR MaLR 1 415 -211 22981 26 10 0 chr12 18740089 18743136 -125043319 + L1P1 LINE L1 2585 5661 -494 10310 173 34 18 chr12 18743239 18745186 -125041269 - HERVE LTR ERV1 -5834 1979 1 1453 245 46 23 chr12 18745186 18745622 -125040833 - LTR2 LTR ERV1 0 449 4 5139 209 28 3 chr12 18745624 18746926 -125039529 + L1 LINE L1 4095 5428 -738 744 204 0 26 chr12 18747027 18747179 -125039276 + MLT1E2 LTR MaLR 479 626 0 196 228 33 130 chr12 18747414 18747506 -125038949 - L3 LINE CR1 -46 1531 1449 2983 262 65 22 chr12 18747772 18749735 -125036720 - L1ME2 LINE L1 -9 6224 4173 1047 280 117 40 chr12 18749735 18750043 -125036412 - L1ME2 LINE L1 -2265 3950 3667 513 32 0 0 chr12 18750043 18750106 -125036349 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1047 280 117 40 chr12 18750106 18750653 -125035802 - L1ME2 LINE L1 -2548 3667 3029 577 222 87 0 chr12 18750654 18750780 -125035675 + MSTA LTR MaLR 31 167 -208 1158 60 0 20 chr12 18750796 18750947 -125035508 + AluY SINE Alu 1 148 -163 692 217 187 3 chr12 18750954 18751156 -125035299 + MSTA LTR MaLR 203 426 -2 239 306 12 0 chr12 18751159 18751244 -125035211 - L1ME2 LINE L1 -3671 2544 2459 1961 138 3 10 chr12 18751447 18751743 -125034712 - AluSg SINE Alu -16 294 1 535 357 21 26 chr12 18751795 18752218 -125034237 - L1ME2 LINE L1 -5968 428 8 21 0 0 0 chr12 18752461 18752482 -125033973 + AT_rich Low_complexity Low_complexity 1 21 0 1110 207 41 98 chr12 18754130 18754517 -125031938 + MLT1A1 LTR MaLR 1 365 0 1034 414 89 5 chr12 18754519 18754901 -125031554 + MLT1A1-int LTR MaLR 3 416 -1319 369 0 0 0 chr12 18754902 18754943 -125031512 + (CA)n Simple_repeat Simple_repeat 2 42 0 2380 181 18 16 chr12 18754970 18755466 -125030989 - L1MA5 LINE L1 -22 6278 5782 800 243 23 0 chr12 18755509 18755686 -125030769 - L1MA5 LINE L1 -504 5793 5613 2256 243 26 87 chr12 18755686 18756465 -125029990 + MLT1A1-int LTR MaLR 407 1137 -598 466 225 109 14 chr12 18756599 18756737 -125029718 + L2 LINE L2 1377 1527 -1787 1268 336 152 2 chr12 18756738 18757303 -125029152 + L2 LINE L2 2006 2655 -659 1097 164 82 86 chr12 18757314 18757570 -125028885 - Tigger3(Golem) DNA MER2_type -2773 256 2 1052 278 57 39 chr12 18758117 18758559 -125027896 + L1MCc LINE L1 17 466 -5957 1098 284 70 61 chr12 18758634 18759786 -125026669 + L1MCc LINE L1 655 1822 -4938 722 282 52 134 chr12 18760004 18760660 -125025795 + L1MDa LINE L1 34 635 -5905 1123 263 75 18 chr12 18760921 18761591 -125024864 + L1MDa LINE L1 2159 2832 -3708 334 159 171 0 chr12 18761603 18761691 -125024764 + L1MDa LINE L1 3903 4005 -2535 * 1002 189 52 21 chr12 18761670 18761903 -125024552 + L1MC1 LINE L1 6479 6718 -9 1307 227 3 7 chr12 18761912 18762198 -125024257 + L1MDa LINE L1 4181 4465 -2075 289 185 120 20 chr12 18762293 18762393 -125024062 + L1ME1 LINE L1 36 254 -6289 316 185 0 109 chr12 18762423 18762515 -125023940 + L1ME1 LINE L1 4500 4581 -1959 227 284 12 0 chr12 18762610 18762691 -125023764 + (TA)n Simple_repeat Simple_repeat 1 82 0 2518 243 45 31 chr12 18762744 18763892 -125022563 + L1ME1 LINE L1 4800 5958 -602 1095 194 18 98 chr12 18763901 18764247 -125022208 + MLT1B LTR MaLR 59 377 -13 1628 264 80 9 chr12 18764251 18764815 -125021640 + L1ME1 LINE L1 5952 6555 -5 224 401 35 7 chr12 18765170 18765312 -125021143 + MIR3 SINE MIR 40 185 -23 306 106 0 0 chr12 18765410 18765457 -125020998 + (CCTA)n Simple_repeat Simple_repeat 3 49 0 21 0 0 0 chr12 18765569 18765590 -125020865 + AT_rich Low_complexity Low_complexity 1 21 0 1792 142 7 0 chr12 18765631 18765913 -125020542 + AluSx SINE Alu 1 284 -28 3797 39 0 0 chr12 18765913 18766370 -125020085 + L1PA3 LINE L1 5696 6152 -3 503 310 116 38 chr12 18766630 18766949 -125019506 + L3 LINE CR1 1230 1573 -4 345 272 40 48 chr12 18766990 18767115 -125019340 + L3 LINE CR1 1337 1460 -117 1704 255 48 10 chr12 18767713 18768128 -125018327 - MLT1F1 LTR MaLR 0 567 137 21 36 0 0 chr12 18769883 18769911 -125016544 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr12 18770351 18770383 -125016072 + AT_rich Low_complexity Low_complexity 1 32 0 1992 170 49 30 chr12 18770450 18770856 -125015599 - MLT2D LTR ERVL 0 414 1 2560 40 0 3 chr12 18772102 18772403 -125014052 + AluY SINE Alu 11 310 -1 3292 175 6 38 chr12 18772415 18773108 -125013347 + L1PA16 LINE L1 5479 6149 -17 28 71 0 0 chr12 18773235 18773291 -125013164 + AT_rich Low_complexity Low_complexity 1 56 0 795 297 112 24 chr12 18773351 18773691 -125012764 - L2 LINE L2 -535 2779 2410 678 197 7 29 chr12 18773765 18773902 -125012553 + THE1C LTR MaLR 3 136 -239 373 211 11 11 chr12 18773902 18773992 -125012463 + L1PA16 LINE L1 6060 6149 -17 1158 148 20 15 chr12 18774187 18774399 -125012056 + THE1C LTR MaLR 143 355 0 21 0 0 0 chr12 18774612 18774633 -125011822 + AT_rich Low_complexity Low_complexity 1 21 0 2256 78 0 36 chr12 18774870 18775179 -125011276 + AluY SINE Alu 1 298 -13 228 178 22 0 chr12 18775762 18775807 -125010648 + A-rich Low_complexity Low_complexity 2 47 0 263 378 68 55 chr12 18776548 18776865 -125009590 - L2 LINE L2 0 3313 2958 25 31 0 0 chr12 18776865 18776897 -125009558 + AT_rich Low_complexity Low_complexity 1 32 0 263 378 68 55 chr12 18776897 18776929 -125009526 - L2 LINE L2 -355 2958 2928 1394 234 8 44 chr12 18777357 18777745 -125008710 + MLT1A2 LTR MaLR 1 374 0 442 362 5 9 chr12 18777837 18778047 -125008408 + L2 LINE L2 2152 2360 -954 418 216 0 0 chr12 18778143 18778217 -125008238 + MLT1H LTR MaLR 51 124 -425 5148 163 35 30 chr12 18778267 18779537 -125006918 - L1MA5 LINE L1 0 6300 5009 1916 146 33 3 chr12 18779537 18779839 -125006616 - AluSx SINE Alu -1 311 1 5148 163 35 30 chr12 18779839 18780331 -125006124 - L1MA5 LINE L1 -1291 5009 4521 343 280 75 0 chr12 18780341 18780448 -125006007 + MLT1H LTR MaLR 236 350 -199 352 349 35 12 chr12 18780606 18780775 -125005680 + L2 LINE L2 2757 2929 -385 435 147 33 7 chr12 18780805 18780955 -125005500 + (TA)n Simple_repeat Simple_repeat 2 155 0 564 273 33 112 chr12 18780969 18781299 -125005156 + L2 LINE L2 3010 3313 0 759 106 18 0 chr12 18781388 18781501 -125004954 - AluY SINE Alu 0 311 197 23 33 0 0 chr12 18782167 18782197 -125004258 + AT_rich Low_complexity Low_complexity 1 30 0 461 253 67 33 chr12 18782262 18782412 -125004043 - MLT1G LTR MaLR -2 588 434 281 340 58 16 chr12 18782664 18782852 -125003603 - MLT1F1 LTR MaLR -343 224 29 7430 203 22 12 chr12 18782852 18783469 -125002986 - L1P5 LINE L1 -708 5443 4833 2211 213 32 10 chr12 18783469 18783966 -125002489 + LTR22 LTR ERVK 1 508 -1 7430 203 22 12 chr12 18783966 18785135 -125001320 - L1P5 LINE L1 -1318 4833 3655 4498 105 4 28 chr12 18785135 18785836 -125000619 + L1PB1 LINE L1 5465 6151 0 230 152 0 0 chr12 18785864 18785897 -125000558 - tRNA-Lys-AAG tRNA tRNA -43 33 1 21 0 0 0 chr12 18786130 18786151 -125000304 + AT_rich Low_complexity Low_complexity 1 21 0 2094 118 13 3 chr12 18786495 18786800 -124999655 + AluSx SINE Alu 1 308 -4 324 279 44 22 chr12 18787295 18787431 -124999024 - MLT1-int LTR MaLR -910 461 323 979 235 32 4 chr12 18787433 18787680 -124998775 - L1MC3 LINE L1 0 7785 7532 36 23 0 0 chr12 18787717 18787760 -124998695 + AT_rich Low_complexity Low_complexity 1 43 0 1059 428 56 0 chr12 18787760 18788045 -124998410 - AluSx SINE Alu -1 301 1 23 0 0 0 chr12 18788096 18788119 -124998336 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr12 18789033 18789060 -124997395 + AT_rich Low_complexity Low_complexity 1 27 0 854 299 48 14 chr12 18790274 18790565 -124995890 + L2 LINE L2 1129 1429 -1885 765 226 62 57 chr12 18790599 18790773 -124995682 + MLT1E LTR MaLR 51 223 -370 596 151 33 46 chr12 18790773 18790895 -124995560 - L1MA8 LINE L1 -2 6289 6168 478 95 81 0 chr12 18790895 18790969 -124995486 + MADE1 DNA Mariner 1 80 0 596 151 33 46 chr12 18790969 18790998 -124995457 - L1MA8 LINE L1 -123 6168 6140 765 226 62 57 chr12 18790998 18791389 -124995066 + MLT1E LTR MaLR 223 591 -2 181 267 0 0 chr12 18791418 18791463 -124994992 + L2 LINE L2 1453 1497 -1817 1865 140 3 3 chr12 18791478 18791764 -124994691 - AluSx SINE Alu -20 292 7 2523 40 3 0 chr12 18791801 18792104 -124994351 - AluYa5 SINE Alu -7 304 1 258 32 0 0 chr12 18792187 18792218 -124994237 + (TG)n Simple_repeat Simple_repeat 2 32 0 318 288 9 9 chr12 18792300 18792411 -124994044 + (TA)n Simple_repeat Simple_repeat 1 111 0 1007 340 70 6 chr12 18792465 18792953 -124993502 + L2 LINE L2 1846 2364 -950 568 310 188 15 chr12 18792955 18793513 -124992942 + L2 LINE L2 2522 3179 -134 215 354 0 0 chr12 18793670 18793735 -124992720 - MIR SINE MIR -187 75 11 261 0 0 0 chr12 18794481 18794510 -124991945 + (GA)n Simple_repeat Simple_repeat 2 30 0 237 314 23 23 chr12 18795911 18795997 -124990458 + MIR SINE MIR 2 87 -175 253 267 38 29 chr12 18796021 18796126 -124990329 - MLT1L LTR MaLR -13 602 497 262 342 64 16 chr12 18796289 18796476 -124989979 + MLT1L LTR MaLR 368 563 -52 349 295 42 58 chr12 18796923 18797113 -124989342 + MIR SINE MIR 76 262 0 474 335 83 54 chr12 18797180 18797661 -124988794 + LTR33 LTR ERVL 26 520 -1 2300 90 3 10 chr12 18797698 18798010 -124988445 - AluSg SINE Alu 0 310 1 22 70 0 0 chr12 18798208 18798251 -124988204 + AT_rich Low_complexity Low_complexity 1 43 0 2186 96 3 0 chr12 18798369 18798651 -124987804 + AluSq SINE Alu 5 287 -26 2505 49 20 0 chr12 18798660 18798964 -124987491 + AluY SINE Alu 1 310 -1 456 292 113 35 chr12 18799131 18799415 -124987040 + LTR67 LTR ERVL 202 507 -50 1335 133 17 43 chr12 18799825 18800058 -124986397 - AluSp SINE Alu -86 227 1 232 172 31 16 chr12 18800138 18800202 -124986253 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 1324 223 51 33 chr12 18800210 18800542 -124985913 - MER7A DNA MER2_type -10 336 1 1339 228 76 42 chr12 18800551 18800998 -124985457 - MLT1C LTR MaLR 0 467 6 305 280 0 50 chr12 18801228 18801328 -124985127 + L1ME4a LINE L1 5989 6083 -38 259 346 76 19 chr12 18801608 18801779 -124984676 + MIR SINE MIR 23 206 -56 211 140 70 0 chr12 18802089 18802146 -124984309 + (TTATA)n Simple_repeat Simple_repeat 1 61 0 235 146 18 36 chr12 18802258 18802313 -124984142 + (TA)n Simple_repeat Simple_repeat 1 54 0 1148 99 93 0 chr12 18802516 18802698 -124983757 - L1MA5A LINE L1 -12 6285 6087 27 0 0 0 chr12 18802939 18802966 -124983489 + AT_rich Low_complexity Low_complexity 1 27 0 2362 116 24 5 chr12 18802967 18803346 -124983109 - L1PA16 LINE L1 -9 6157 5772 722 314 21 42 chr12 18803376 18803991 -124982464 - L1ME3A LINE L1 -241 5929 5328 325 44 0 22 chr12 18804833 18804878 -124981577 + MLT2A2 LTR ERVL 407 450 -3 344 59 20 0 chr12 18804878 18804929 -124981526 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 351 0 0 0 chr12 18805006 18805045 -124981410 + (TA)n Simple_repeat Simple_repeat 1 39 0 287 267 23 61 chr12 18805074 18805205 -124981250 + L1MC4 LINE L1 7917 8042 0 369 322 61 26 chr12 18805383 18805613 -124980842 + L1ME LINE L1 3973 4210 -1936 2102 88 32 0 chr12 18805635 18805919 -124980536 - AluY SINE Alu -18 293 1 21 0 0 0 chr12 18805920 18805941 -124980514 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 18805995 18806016 -124980439 + (A)n Simple_repeat Simple_repeat 1 21 0 410 255 0 28 chr12 18806070 18806176 -124980279 + MER106B DNA MER1_type 21 123 -936 521 309 80 20 chr12 18806264 18806465 -124979990 - MLT1I LTR MaLR -52 357 145 369 225 0 0 chr12 18806465 18806554 -124979901 + (TA)n Simple_repeat Simple_repeat 1 89 0 229 214 71 12 chr12 18806559 18806643 -124979812 + L1MC4 LINE L1 6615 6703 -1339 242 322 0 0 chr12 18806659 18806749 -124979706 + L1MC4 LINE L1 6614 6703 -1339 486 252 0 0 chr12 18806750 18806881 -124979574 + (TA)n Simple_repeat Simple_repeat 1 131 0 234 337 0 0 chr12 18806887 18806976 -124979479 - L1MC4 LINE L1 -1340 6702 6614 * 262 284 23 0 chr12 18806952 18807040 -124979415 + L1MC4 LINE L1 6614 6703 -1339 249 172 0 35 chr12 18807010 18807068 -124979387 - L1MC4 LINE L1 -1339 6703 6648 * 325 296 39 61 chr12 18807319 18807549 -124978906 + L1ME LINE L1 4550 4774 -1372 403 275 117 39 chr12 18807588 18808258 -124978197 + L1ME LINE L1 4862 5575 -587 2737 138 9 0 chr12 18808548 18809022 -124977433 - THE1B-int LTR MaLR -1150 430 1 1895 164 25 33 chr12 18809022 18809199 -124977256 - THE1B LTR MaLR 0 364 187 2491 14 0 0 chr12 18809199 18809474 -124976981 + AluYa5 SINE Alu 37 311 0 1895 164 25 33 chr12 18809474 18809663 -124976792 - THE1B LTR MaLR -177 187 1 9006 196 14 11 chr12 18809663 18811877 -124974578 + L1P5 LINE L1 3301 5514 -637 1303 214 86 12 chr12 18811872 18812209 -124974246 + L1MA10 LINE L1 5972 6333 -1 * 279 100 0 0 chr12 18812270 18812310 -124974145 - MADE1 DNA Mariner -40 40 1 200 182 0 0 chr12 18812738 18812771 -124973684 + (TG)n Simple_repeat Simple_repeat 2 34 0 486 404 56 23 chr12 18812956 18813387 -124973068 - L2 LINE L2 -1 3271 2827 185 330 67 57 chr12 18813573 18813782 -124972673 - L2 LINE L2 -774 2540 2330 230 159 0 0 chr12 18814833 18814877 -124971578 + (TA)n Simple_repeat Simple_repeat 1 44 0 219 139 0 0 chr12 18815846 18815882 -124970573 + (T)n Simple_repeat Simple_repeat 1 36 0 1186 260 65 68 chr12 18816318 18817010 -124969445 + Charlie7 DNA MER1_type 34 723 -1889 183 162 0 0 chr12 18817101 18817138 -124969317 + (TA)n Simple_repeat Simple_repeat 2 38 0 528 305 70 10 chr12 18817631 18817831 -124968624 - MIR SINE MIR 0 262 51 22 35 0 0 chr12 18818666 18818695 -124967760 + AT_rich Low_complexity Low_complexity 1 29 0 570 303 63 31 chr12 18819439 18819693 -124966762 + MIR SINE MIR 1 262 0 371 303 76 28 chr12 18819929 18820140 -124966315 - L2 LINE L2 0 3313 3009 985 248 106 20 chr12 18820308 18820611 -124965844 - MER2 DNA MER2_type -16 329 1 23 54 0 0 chr12 18820623 18820660 -124965795 + AT_rich Low_complexity Low_complexity 1 37 0 330 335 197 0 chr12 18820737 18820955 -124965500 - MIR SINE MIR 0 262 2 24 0 0 0 chr12 18821012 18821036 -124965419 + AT_rich Low_complexity Low_complexity 1 24 0 217 346 56 19 chr12 18821395 18821502 -124964953 - MIR SINE MIR 0 262 152 1893 53 0 0 chr12 18821577 18821805 -124964650 - AluY SINE Alu -8 303 76 432 0 0 0 chr12 18823070 18823118 -124963337 + (CA)n Simple_repeat Simple_repeat 1 48 0 267 194 65 0 chr12 18823732 18823825 -124962630 + (TA)n Simple_repeat Simple_repeat 1 99 0 228 35 0 0 chr12 18823833 18823862 -124962593 + (CA)n Simple_repeat Simple_repeat 2 30 0 180 111 0 0 chr12 18824512 18824539 -124961916 + (TG)n Simple_repeat Simple_repeat 2 28 0 1561 179 7 23 chr12 18824795 18825096 -124961359 + AluJb SINE Alu 17 312 0 332 344 53 8 chr12 18825637 18825768 -124960687 + MIR3 SINE MIR 21 157 -51 50 59 0 0 chr12 18826101 18826186 -124960269 + AT_rich Low_complexity Low_complexity 1 85 0 22 0 0 0 chr12 18826602 18826624 -124959831 + AT_rich Low_complexity Low_complexity 1 22 0 780 237 17 6 chr12 18826916 18827093 -124959362 - MER58A DNA MER1_type 0 224 46 23 54 0 0 chr12 18827456 18827493 -124958962 + AT_rich Low_complexity Low_complexity 1 37 0 846 259 89 25 chr12 18828161 18828485 -124957970 - L1ME2 LINE L1 -9 6155 5811 1097 263 90 57 chr12 18828491 18829534 -124956921 - L1MDa LINE L1 -4025 2696 1464 877 321 79 42 chr12 18829558 18830631 -124955824 - L1MEc LINE L1 -5143 1253 141 2491 20 7 0 chr12 18831194 18831492 -124954963 + L1P LINE L1 2186 2485 -3661 1589 247 31 9 chr12 18831592 18832046 -124954409 - L1P LINE L1 -883 5263 4800 279 0 0 0 chr12 18832046 18832077 -124954378 + (TC)n Simple_repeat Simple_repeat 2 32 0 301 196 0 0 chr12 18832077 18832133 -124954322 + L1MC4 LINE L1 6648 6703 -1339 276 172 0 0 chr12 18832133 18832191 -124954264 + (TA)n Simple_repeat Simple_repeat 2 59 0 512 220 27 0 chr12 18832204 18832366 -124954089 - L1P LINE L1 -1300 4846 4674 * 606 277 30 24 chr12 18832364 18832700 -124953755 + L1M4c LINE L1 2053 2390 -3994 233 253 24 12 chr12 18832755 18832838 -124953617 - L1MDa LINE L1 -5183 1357 1274 25 65 0 0 chr12 18833989 18834035 -124952420 + AT_rich Low_complexity Low_complexity 1 46 0 32 26 0 0 chr12 18834168 18834207 -124952248 + AT_rich Low_complexity Low_complexity 1 39 0 1436 208 64 22 chr12 18834378 18834718 -124951737 - MLT1A1 LTR MaLR 0 365 4 220 373 20 20 chr12 18834837 18835038 -124951417 - MIR SINE MIR 0 262 62 25 51 0 0 chr12 18835054 18835093 -124951362 + AT_rich Low_complexity Low_complexity 1 39 0 242 326 7 0 chr12 18837592 18837736 -124948719 + L1M4 LINE L1 5197 5341 -805 4222 324 90 35 chr12 18837765 18840239 -124946216 - L2 LINE L2 -676 2638 28 2629 176 0 2 chr12 18840280 18840762 -124945693 + L1P LINE L1 4124 4604 -1542 22 0 0 0 chr12 18840771 18840793 -124945662 + AT_rich Low_complexity Low_complexity 1 22 0 921 278 57 22 chr12 18843132 18843538 -124942917 - L1ME3A LINE L1 -219 5951 5532 26 50 0 0 chr12 18843736 18843776 -124942679 + AT_rich Low_complexity Low_complexity 1 40 0 291 299 164 45 chr12 18844519 18844720 -124941735 - LTR67 LTR ERVL -225 332 108 181 331 24 57 chr12 18844833 18844957 -124941498 - MIR SINE MIR -142 120 1 401 302 38 33 chr12 18845618 18845783 -124940672 + MIR SINE MIR 3 169 -67 455 359 105 34 chr12 18846213 18846331 -124940124 + L2 LINE L2 2636 2744 -528 2184 109 0 25 chr12 18846331 18846652 -124939803 - AluSq SINE Alu 0 313 1 455 359 105 34 chr12 18846652 18847125 -124939330 + L2 LINE L2 2744 3270 -2 1360 86 19 10 chr12 18847369 18847578 -124938877 - L1MA6 LINE L1 0 6300 6090 3885 116 9 7 chr12 18847605 18848175 -124938280 - MER39B LTR ERV1 -79 574 4 1045 63 0 28 chr12 18848478 18848620 -124937835 - L1PA10 LINE L1 0 6168 6031 23 33 0 0 chr12 18849164 18849194 -124937261 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr12 18850450 18850482 -124935973 + AT_rich Low_complexity Low_complexity 1 32 0 369 322 56 14 chr12 18851472 18851615 -124934840 - MIR SINE MIR -60 202 54 903 345 28 16 chr12 18854082 18854517 -124931938 + L1M3c LINE L1 1360 1799 -5697 1056 270 45 16 chr12 18854535 18854917 -124931538 + L1M3c LINE L1 2176 2568 -4921 909 303 79 19 chr12 18854945 18855682 -124930773 + L1M3c LINE L1 2803 3583 -3982 8862 146 46 46 chr12 18855691 18859396 -124927059 + L1PBa LINE L1 1 4014 -2848 2074 167 28 0 chr12 18859403 18859757 -124926698 - THE1B LTR MaLR 0 364 1 2631 128 68 0 chr12 18859762 18860176 -124926279 - THE1B-int LTR MaLR -6 1574 1133 9653 151 6 21 chr12 18860278 18861865 -124924590 + Harlequin LTR ERV1 3335 4896 -2917 * 12775 191 12 7 chr12 18861861 18864148 -124922307 + Harlequin LTR ERV1 5469 7766 -47 526 211 10 0 chr12 18864142 18864246 -124922209 + Harlequin LTR ERV1 6747 6851 -45 * 2101 222 31 2 chr12 18864349 18864764 -124921691 + MLT1A1-int LTR MaLR 1308 1734 -1 1015 221 50 99 chr12 18864765 18865149 -124921306 + MLT1A1 LTR MaLR 1 365 0 224 30 30 0 chr12 18865189 18865222 -124921233 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3167 143 25 0 chr12 18865274 18865757 -124920698 + MER1A DNA MER1_type 35 529 0 215 31 31 0 chr12 18867532 18867564 -124918891 + (CAA)n Simple_repeat Simple_repeat 1 33 0 276 100 0 0 chr12 18867772 18867812 -124918643 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 30 0 0 0 chr12 18869205 18869235 -124917220 + AT_rich Low_complexity Low_complexity 1 30 0 1190 173 157 0 chr12 18869245 18869500 -124916955 - L1PA16 LINE L1 -2 6164 5870 2062 124 0 14 chr12 18870803 18871094 -124915361 + AluSc SINE Alu 6 292 -17 417 303 31 6 chr12 18872055 18872217 -124914238 - L3 LINE CR1 -603 974 809 1216 188 104 8 chr12 18872361 18872610 -124913845 + MSTA LTR MaLR 3 275 -153 7005 211 104 19 chr12 18872610 18874228 -124912227 + MER52A LTR ERV1 1 1755 0 886 143 136 0 chr12 18874228 18874365 -124912090 + MSTA LTR MaLR 272 428 0 239 274 0 48 chr12 18875455 18875517 -124910938 + L2 LINE L2 3204 3262 -10 183 302 69 82 chr12 18876511 18876670 -124909785 - L2 LINE L2 -1 3271 3115 23 0 0 0 chr12 18878188 18878211 -124908244 + AT_rich Low_complexity Low_complexity 1 23 0 2393 63 20 3 chr12 18878370 18878669 -124907786 - AluY SINE Alu -7 304 1 1383 207 121 15 chr12 18878957 18879295 -124907160 - MLT1A2 LTR MaLR 0 374 1 679 284 91 23 chr12 18879859 18880224 -124906231 - L2 LINE L2 -157 3156 2771 180 0 0 0 chr12 18880647 18880667 -124905788 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1972 115 7 0 chr12 18880667 18880945 -124905510 - AluSx SINE Alu -32 280 1 850 131 7 29 chr12 18880953 18881090 -124905365 - AluSc SINE Alu -175 134 1 23 54 0 0 chr12 18881444 18881481 -124904974 + AT_rich Low_complexity Low_complexity 1 37 0 297 266 16 0 chr12 18881583 18881647 -124904808 + polypyrimidine Low_complexity Low_complexity 3 67 0 369 0 0 0 chr12 18883642 18883683 -124902772 + (CA)n Simple_repeat Simple_repeat 2 42 0 6835 33 1 1 chr12 18887275 18888099 -124898356 - L1PA4 LINE L1 -3 6152 5329 440 291 5 3 chr12 18888244 18888364 -124898091 + MIR SINE MIR 57 178 -30 203 217 17 0 chr12 18888450 18888510 -124897945 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 21 36 0 0 chr12 18888542 18888570 -124897885 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr12 18889611 18889649 -124896806 + AT_rich Low_complexity Low_complexity 1 38 0 493 306 105 48 chr12 18891705 18892263 -124894192 - L2 LINE L2 -10 3303 2711 395 137 14 0 chr12 18892756 18892829 -124893626 + GA-rich Low_complexity Low_complexity 2 75 0 2034 162 29 6 chr12 18894025 18894365 -124892090 - MER7A DNA MER2_type 0 346 1 921 220 155 25 chr12 18895576 18895899 -124890556 - MLT1A1 LTR MaLR 0 365 1 303 73 0 0 chr12 18896516 18896557 -124889898 - L1PA7 LINE L1 -13 6141 6101 539 95 0 0 chr12 18896659 18896743 -124889712 - L1M1 LINE L1 -612 5542 5459 940 42 25 0 chr12 18896756 18896875 -124889580 + L1P LINE L1 4173 4294 -1852 25 0 0 0 chr12 18897202 18897227 -124889228 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr12 18897380 18897408 -124889047 + AT_rich Low_complexity Low_complexity 1 28 0 5165 87 8 20 chr12 18898164 18899046 -124887409 - L1P3 LINE L1 -694 5478 4608 579 309 70 31 chr12 18899027 18899517 -124886938 - L1MEc LINE L1 -4708 1688 1170 * 2043 139 3 0 chr12 18899517 18899818 -124886637 - AluSg SINE Alu -8 302 1 579 309 70 31 chr12 18899818 18899912 -124886543 - L1MEc LINE L1 -5226 1170 1081 21 57 0 0 chr12 18900130 18900165 -124886290 + AT_rich Low_complexity Low_complexity 1 35 0 1063 336 91 26 chr12 18903516 18904166 -124882289 + L2 LINE L2 2308 3002 -311 311 301 114 34 chr12 18904182 18904358 -124882097 + L2 LINE L2 3124 3313 0 1423 278 29 22 chr12 18904479 18904929 -124881526 - LTR16B LTR ERVL -11 453 1 316 236 0 73 chr12 18905597 18905676 -124880779 - L1MC4 LINE L1 -1339 6703 6633 2280 74 0 3 chr12 18905676 18905961 -124880494 - AluY SINE Alu -15 296 13 316 236 0 73 chr12 18905961 18905991 -124880464 - L1MC4 LINE L1 -1409 6633 6602 21 36 0 0 chr12 18906196 18906224 -124880231 + AT_rich Low_complexity Low_complexity 1 28 0 210 304 80 54 chr12 18907836 18907948 -124878507 - MIR SINE MIR -36 226 112 2556 36 3 0 chr12 18908177 18908482 -124877973 - AluYb8 SINE Alu -12 306 1 296 357 60 30 chr12 18908529 18908798 -124877657 + L2 LINE L2 2593 2869 -445 204 97 0 0 chr12 18909868 18909899 -124876556 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 2318 111 28 3 chr12 18909901 18910261 -124876194 - L1PB1 LINE L1 -10 6141 5773 1652 208 17 0 chr12 18961613 18961911 -124824544 - AluJb SINE Alu -9 303 1 23 33 0 0 chr12 18961914 18961944 -124824511 + AT_rich Low_complexity Low_complexity 1 30 0 214 325 38 0 chr12 18962317 18962397 -124824058 - L2 LINE L2 -8 3305 3223 * 517 288 63 14 chr12 18962391 18962613 -124823842 - L2 LINE L2 -733 2581 2349 2418 107 22 8 chr12 18962859 18963214 -124823241 - L1PB1 LINE L1 -2 6149 5787 195 42 0 0 chr12 18963214 18963238 -124823217 + (TG)n Simple_repeat Simple_repeat 2 25 0 225 0 0 0 chr12 18963258 18963283 -124823172 + (CA)n Simple_repeat Simple_repeat 2 26 0 3809 163 16 21 chr12 18963317 18963922 -124822533 - L1PB1 LINE L1 -360 5791 5184 405 0 0 0 chr12 18963922 18963967 -124822488 + (TTA)n Simple_repeat Simple_repeat 2 46 0 3809 163 16 21 chr12 18963967 18964704 -124821751 - L1PB1 LINE L1 -967 5184 4461 3042 148 21 14 chr12 18964898 18965459 -124820996 - L1MA4 LINE L1 0 6300 5736 264 386 64 29 chr12 18965916 18966087 -124820368 + MER5A DNA MER1_type 11 187 -2 1371 179 55 34 chr12 18966311 18966602 -124819853 - AluJb SINE Alu -9 303 7 884 73 0 0 chr12 18967404 18967514 -124818941 - AluY SINE Alu -10 301 192 224 154 19 0 chr12 18968429 18968481 -124817974 + (TA)n Simple_repeat Simple_repeat 2 54 0 558 227 5 60 chr12 18969328 18969513 -124816942 - LOR1-int LTR ERV1 -6647 1473 1299 21 0 0 0 chr12 18970304 18970325 -124816130 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 18971347 18971375 -124815080 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr12 18972160 18972183 -124814272 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 198 237 105 26 chr12 18973056 18973132 -124813323 + MIR SINE MIR 80 161 -101 318 291 102 0 chr12 18973510 18973637 -124812818 + MIR SINE MIR 67 206 -56 561 264 30 124 chr12 18973648 18973896 -124812559 + MER101B LTR ERV1 1 212 -358 1542 156 201 6 chr12 18973896 18974254 -124812201 - MSTA LTR MaLR 0 428 1 561 264 30 124 chr12 18974254 18974335 -124812120 + MER101B LTR ERV1 212 299 -271 427 378 65 13 chr12 18978173 18978403 -124808052 - MIR SINE MIR 0 262 21 544 337 127 23 chr12 18978431 18978817 -124807638 - L3 LINE CR1 -104 1473 1048 1282 162 8 17 chr12 18979926 18980160 -124806295 + AluJb SINE Alu 70 301 -11 1332 160 0 9 chr12 18980368 18980587 -124805868 + AluJb SINE Alu 82 298 -14 25 0 0 0 chr12 18980637 18980662 -124805793 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr12 18981869 18981892 -124804563 + AT_rich Low_complexity Low_complexity 1 23 0 269 293 38 38 chr12 18984908 18985014 -124801441 + L2 LINE L2 3190 3295 -18 371 344 185 32 chr12 18986280 18987007 -124799448 - L2 LINE L2 0 3313 2483 427 333 79 50 chr12 18987724 18988066 -124798389 - MLT1K LTR MaLR -234 354 3 33 25 0 0 chr12 18988106 18988146 -124798309 + AT_rich Low_complexity Low_complexity 1 40 0 1820 90 9 100 chr12 18988146 18988467 -124797988 - AluSq SINE Alu -21 292 1 23 54 0 0 chr12 18988743 18988780 -124797675 + AT_rich Low_complexity Low_complexity 1 37 0 408 286 23 64 chr12 18988780 18989046 -124797409 + L1M4 LINE L1 2232 2486 -3660 22 35 0 0 chr12 18989210 18989239 -124797216 + AT_rich Low_complexity Low_complexity 1 29 0 40 37 0 0 chr12 18989348 18989402 -124797053 + AT_rich Low_complexity Low_complexity 1 54 0 322 235 17 92 chr12 18989430 18989549 -124796906 + L1MB5 LINE L1 3 112 -6430 3361 257 41 46 chr12 18989668 18989936 -124796519 + L1MB5 LINE L1 350 618 -5924 1796 142 26 3 chr12 18989936 18990239 -124796216 + AluSg SINE Alu 1 310 0 3361 257 41 46 chr12 18990239 18991271 -124795184 + L1MB5 LINE L1 618 1643 -4899 897 229 80 0 chr12 18991286 18991535 -124794920 + L1MB5 LINE L1 1509 1777 -4869 2072 158 36 46 chr12 18991669 18992223 -124794232 + MLT2A2 LTR ERVL 1 554 0 262 286 0 44 chr12 18992236 18992327 -124794128 + L1MB2 LINE L1 582 668 -5907 3038 174 25 9 chr12 18992400 18993036 -124793419 + L1MB2 LINE L1 1985 2630 -4016 1685 188 22 8 chr12 18993042 18993410 -124793045 + L1MB3 LINE L1 5807 6179 -4 3324 194 28 35 chr12 18993416 18994246 -124792209 + L1MB2 LINE L1 4449 5272 -1372 3853 210 40 35 chr12 18994250 18995497 -124790958 + L1MB2 LINE L1 5425 6668 -1 955 257 34 34 chr12 18995495 18995822 -124790633 + L1MB5 LINE L1 1767 2093 -4553 * 1039 253 108 35 chr12 18995921 18996730 -124789725 + L1MB5 LINE L1 2363 3227 -3417 2044 222 10 32 chr12 18996758 18996958 -124789497 + L1MB5 LINE L1 5977 6180 -492 2378 230 18 6 chr12 18996958 18997467 -124788988 - MLT2B2 LTR ERVL 0 515 1 2044 222 10 32 chr12 18997467 18997765 -124788690 + L1MB5 LINE L1 6180 6464 -208 463 250 110 0 chr12 18997768 18997904 -124788551 + L1MB5 LINE L1 6513 6663 -9 23 33 0 0 chr12 18997937 18997967 -124788488 + AT_rich Low_complexity Low_complexity 1 30 0 240 167 0 0 chr12 18999043 18999091 -124787364 + Alu SINE Alu 259 306 -2 266 365 62 15 chr12 19000160 19000500 -124785955 - L1MC/D LINE L1 -1911 5897 5542 690 268 61 45 chr12 19000576 19000822 -124785633 + MIR SINE MIR 13 262 0 307 358 72 46 chr12 19000923 19001525 -124784930 - L2 LINE L2 -183 3089 2467 1923 139 13 0 chr12 19001560 19001862 -124784593 + AluSx SINE Alu 1 306 -6 225 0 0 0 chr12 19002027 19002052 -124784403 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1933 117 45 3 chr12 19002253 19002543 -124783912 + AluSx SINE Alu 2 303 -9 439 349 20 21 chr12 19002616 19002820 -124783635 - MIR SINE MIR -30 232 30 247 247 26 26 chr12 19004666 19004743 -124781712 - MIR SINE MIR 0 262 186 350 330 122 5 chr12 19005014 19005211 -124781244 - MIR SINE MIR -9 253 34 213 154 0 0 chr12 19005494 19005533 -124780922 + (CATA)n Simple_repeat Simple_repeat 2 40 0 348 64 0 0 chr12 19005541 19005588 -124780867 + (TG)n Simple_repeat Simple_repeat 2 48 0 33 43 0 0 chr12 19006237 19006284 -124780171 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr12 19006339 19006361 -124780094 + AT_rich Low_complexity Low_complexity 1 22 0 23 78 0 0 chr12 19006543 19006594 -124779861 + AT_rich Low_complexity Low_complexity 1 51 0 214 118 66 26 chr12 19007294 19007370 -124779085 + (TTATA)n Simple_repeat Simple_repeat 1 79 0 28 48 0 0 chr12 19007377 19007419 -124779036 + AT_rich Low_complexity Low_complexity 1 42 0 212 339 79 22 chr12 19007620 19007809 -124778646 - MIR3 SINE MIR -7 201 3 301 281 78 39 chr12 19009255 19009383 -124777072 - MIR SINE MIR -39 223 91 * 821 238 26 22 chr12 19009381 19009612 -124776843 - MIR SINE MIR 0 262 31 186 346 50 40 chr12 19010218 19010319 -124776136 + L2 LINE L2 2987 3088 -184 33 43 0 0 chr12 19010536 19010583 -124775872 + AT_rich Low_complexity Low_complexity 1 47 0 870 171 94 0 chr12 19011388 19011569 -124774886 + L1PBa LINE L1 3 200 -6663 12012 171 70 7 chr12 19011569 19015763 -124770692 + L1PBa LINE L1 634 5089 -1773 764 295 0 0 chr12 19016065 19016255 -124770200 - MIR SINE MIR -33 229 40 771 326 164 27 chr12 19018863 19019564 -124766891 - L2 LINE L2 0 3313 2516 1890 129 11 11 chr12 19019568 19019899 -124766556 + AluSp SINE Alu 1 331 0 2253 90 0 0 chr12 19020431 19020742 -124765713 - AluYa5 SINE Alu 0 311 1 23 68 0 0 chr12 19021359 19021403 -124765052 + AT_rich Low_complexity Low_complexity 1 44 0 213 346 119 10 chr12 19022208 19022309 -124764146 + L2 LINE L2 2940 3051 -221 23 33 0 0 chr12 19023082 19023112 -124763343 + AT_rich Low_complexity Low_complexity 1 30 0 42052 50 7 4 chr12 19023568 19029692 -124756763 + L1PA4 LINE L1 1 6144 -11 218 336 88 9 chr12 19029741 19029854 -124756601 + MIR3 SINE MIR 83 204 -4 882 323 56 39 chr12 19030600 19031568 -124754887 + HAL1 LINE L1 1178 2161 -346 231 304 71 68 chr12 19031640 19031962 -124754493 + MLT1I LTR MaLR 73 395 -14 4311 214 20 9 chr12 19032044 19032943 -124753512 - MER49 LTR ERV1 0 923 15 3502 203 121 44 chr12 19033134 19033630 -124752825 + Tigger6a DNA MER2_type 4 461 -1136 2609 118 11 8 chr12 19033630 19034004 -124752451 + THE1C LTR MaLR 1 375 0 9644 112 33 43 chr12 19034004 19035600 -124750855 + THE1C-int LTR MaLR 1 1580 0 2644 101 5 8 chr12 19035600 19035976 -124750479 + THE1C LTR MaLR 1 375 0 3502 203 121 44 chr12 19035976 19036480 -124749975 + Tigger6a DNA MER2_type 460 1083 0 275 271 7 79 chr12 19036481 19036621 -124749834 + HAL1 LINE L1 2373 2502 -5 22 56 0 0 chr12 19036623 19036659 -124749796 + AT_rich Low_complexity Low_complexity 1 36 0 477 307 82 26 chr12 19036816 19037047 -124749408 - MIR SINE MIR -1 261 18 21 0 0 0 chr12 19037440 19037461 -124748994 + AT_rich Low_complexity Low_complexity 1 21 0 183 357 9 45 chr12 19037487 19037599 -124748856 + MER5A DNA MER1_type 2 109 -80 1155 206 12 4 chr12 19037737 19037904 -124748551 - L1MA10 LINE L1 -5 6329 6158 207 0 0 0 chr12 19037904 19037927 -124748528 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1155 206 12 4 chr12 19037927 19038016 -124748439 - L1MA10 LINE L1 -176 6158 6071 26 100 0 0 chr12 19038471 19038541 -124747914 + AT_rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr12 19038769 19038791 -124747664 + AT_rich Low_complexity Low_complexity 1 22 0 362 159 0 0 chr12 19039150 19039213 -124747242 - L1MA6 LINE L1 -11 6289 6227 207 0 0 0 chr12 19039426 19039449 -124747006 + (CA)n Simple_repeat Simple_repeat 1 23 0 263 209 23 12 chr12 19039454 19039540 -124746915 + L1MC4 LINE L1 6617 6703 -1339 876 288 74 22 chr12 19039547 19039737 -124746718 - L1M4 LINE L1 -3617 2765 2586 2060 105 3 35 chr12 19039737 19040052 -124746403 - AluSc SINE Alu -4 305 1 876 288 74 22 chr12 19040052 19040504 -124745951 - L1M4 LINE L1 -3796 2586 2084 297 0 0 0 chr12 19040620 19040653 -124745802 + (TG)n Simple_repeat Simple_repeat 2 34 0 189 171 0 0 chr12 19040653 19040688 -124745767 + (TA)n Simple_repeat Simple_repeat 2 36 0 1332 94 6 6 chr12 19040924 19041105 -124745350 - AluSq SINE Alu -20 293 113 1237 272 80 12 chr12 19041116 19041678 -124744777 - L1M4 LINE L1 -2512 3634 3035 225 167 42 21 chr12 19041678 19041726 -124744729 + CT-rich Low_complexity Low_complexity 3 51 0 1536 241 69 20 chr12 19041872 19042564 -124743891 + L1MB8 LINE L1 4790 5528 -656 1445 114 0 0 chr12 19042579 19042789 -124743666 - L1PA13 LINE L1 -84 6079 5870 2034 196 125 51 chr12 19042791 19043398 -124743057 + L1MB8 LINE L1 5514 6165 -13 344 274 18 73 chr12 19043838 19044002 -124742453 + L2 LINE L2 3159 3313 0 22 0 0 0 chr12 19044346 19044368 -124742087 + AT_rich Low_complexity Low_complexity 1 22 0 25 83 0 0 chr12 19044559 19044619 -124741836 + AT_rich Low_complexity Low_complexity 1 60 0 27 29 0 0 chr12 19044777 19044811 -124741644 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr12 19045025 19045054 -124741401 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr12 19046327 19046350 -124740105 + AT_rich Low_complexity Low_complexity 1 23 0 706 215 17 35 chr12 19046794 19046966 -124739489 - MER45A DNA AcHobo -9 169 1 264 319 59 25 chr12 19046984 19047103 -124739352 - MIR SINE MIR -80 182 60 204 299 0 30 chr12 19048642 19048709 -124737746 - L2 LINE L2 -4 3268 3204 23 0 0 0 chr12 19048991 19049014 -124737441 + AT_rich Low_complexity Low_complexity 1 23 0 337 323 57 31 chr12 19049452 19049644 -124736811 + L2 LINE L2 2244 2440 -874 545 78 0 0 chr12 19049791 19049868 -124736587 - AluY SINE Alu -58 253 177 27 62 0 0 chr12 19050797 19050845 -124735610 + AT_rich Low_complexity Low_complexity 1 48 0 350 292 185 0 chr12 19051838 19051968 -124734487 - L2 LINE L2 -1 3312 3159 21 57 0 0 chr12 19052262 19052297 -124734158 + AT_rich Low_complexity Low_complexity 1 35 0 185 220 0 34 chr12 19052419 19052438 -124734017 + GA-rich Low_complexity Low_complexity 4 22 -38 2336 57 40 0 chr12 19052438 19052735 -124733720 + AluY SINE Alu 1 309 -2 185 220 0 34 chr12 19052735 19052774 -124733681 + GA-rich Low_complexity Low_complexity 22 60 0 22 35 0 0 chr12 19053668 19053697 -124732758 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr12 19053978 19053998 -124732457 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 271 385 26 17 chr12 19054298 19054415 -124732040 - L2 LINE L2 0 3272 3155 1358 275 123 16 chr12 19054429 19054917 -124731538 - MLT1F LTR MaLR -2 540 1 2550 39 0 0 chr12 19055634 19055939 -124730516 - AluY SINE Alu -6 305 1 24 0 0 0 chr12 19056058 19056082 -124730373 + AT_rich Low_complexity Low_complexity 1 24 0 291 157 0 0 chr12 19057970 19058021 -124728434 + CT-rich Low_complexity Low_complexity 2 52 0 200 167 0 56 chr12 19058013 19058067 -124728388 + T-rich Low_complexity Low_complexity 3 53 0 * 257 262 58 29 chr12 19058247 19058350 -124728105 + MIR SINE MIR 89 194 -68 25 31 0 0 chr12 19058651 19058683 -124727772 + AT_rich Low_complexity Low_complexity 1 32 0 558 311 110 23 chr12 19058750 19059049 -124727406 - L3 LINE CR1 -36 1541 1217 22 0 0 0 chr12 19061141 19061163 -124725292 + AT_rich Low_complexity Low_complexity 1 22 0 1330 166 143 21 chr12 19061400 19061747 -124724708 + MSTA LTR MaLR 1 367 -29 451 333 33 33 chr12 19064804 19065044 -124721411 - L1MDa LINE L1 -4589 1951 1712 4338 201 32 58 chr12 19065045 19065106 -124721349 - L1M2 LINE L1 -521 5776 5715 1373 163 56 14 chr12 19065106 19065394 -124721061 - L1MA8 LINE L1 -15 6276 5977 4338 201 32 58 chr12 19065394 19067369 -124719086 - L1M2 LINE L1 -582 5715 3818 400 286 128 50 chr12 19067394 19067749 -124718706 - L1MDa LINE L1 -4863 1667 1269 22 35 0 0 chr12 19067774 19067803 -124718652 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 19068384 19068405 -124718050 + AT_rich Low_complexity Low_complexity 1 21 0 233 356 17 17 chr12 19068628 19068746 -124717709 - MIR SINE MIR -71 191 74 21 71 0 0 chr12 19068838 19068880 -124717575 + AT_rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr12 19068986 19069030 -124717425 + AT_rich Low_complexity Low_complexity 1 44 0 341 246 40 62 chr12 19069754 19069978 -124716477 + MER113 DNA MER1_type? 4 222 -299 2239 49 3 0 chr12 19071073 19071358 -124715097 + L1PA5 LINE L1 5866 6151 -3 3978 240 51 22 chr12 19071816 19073653 -124712802 + L1M4 LINE L1 3902 5794 -384 385 259 61 0 chr12 19073661 19073792 -124712663 + L1M4 LINE L1 4781 4919 -1227 233 167 62 0 chr12 19073843 19073891 -124712564 + L1M4 LINE L1 2300 2350 -3796 725 180 70 0 chr12 19073954 19074126 -124712329 - L1MA7 LINE L1 0 6291 6108 441 274 19 0 chr12 19074122 19074279 -124712176 - L1MDa LINE L1 -3890 2650 2491 * 20579 58 3 1 chr12 19074286 19076922 -124709533 + L1P LINE L1 334 2974 -3172 214 186 51 0 chr12 19077156 19077215 -124709240 + (TA)n Simple_repeat Simple_repeat 2 63 0 213 154 0 0 chr12 19077216 19077255 -124709200 + (TG)n Simple_repeat Simple_repeat 2 40 0 822 241 77 14 chr12 19077641 19077861 -124708594 - MIR SINE MIR 0 262 29 350 270 34 62 chr12 19078846 19079024 -124707431 + MIR SINE MIR 84 256 -6 449 290 37 67 chr12 19082061 19082284 -124704171 - MLT1H1 LTR MaLR -310 245 25 262 156 31 0 chr12 19082512 19082576 -124703879 + (TA)n Simple_repeat Simple_repeat 2 67 0 23 78 0 0 chr12 19083633 19083684 -124702771 + AT_rich Low_complexity Low_complexity 1 51 0 25 95 0 0 chr12 19084190 19084264 -124702191 + AT_rich Low_complexity Low_complexity 1 74 0 23 68 0 0 chr12 19085389 19085433 -124701022 + AT_rich Low_complexity Low_complexity 1 44 0 2335 103 130 8 chr12 19086145 19086544 -124699911 - LTR7 LTR ERV1 -2 448 1 244 345 0 18 chr12 19087018 19087131 -124699324 + GA-rich Low_complexity Low_complexity 3 113 0 33 25 0 0 chr12 19087582 19087622 -124698833 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr12 19087740 19087762 -124698693 + AT_rich Low_complexity Low_complexity 1 22 0 4831 260 76 41 chr12 19087862 19089748 -124696707 + L1M4b LINE L1 11 1976 -4879 1769 132 4 0 chr12 19089796 19090053 -124696402 + AluSx SINE Alu 17 274 -38 507 189 98 14 chr12 19090275 19090418 -124696037 + ORSL DNA AcHobo 2 156 -119 24 0 0 0 chr12 19091051 19091075 -124695380 + AT_rich Low_complexity Low_complexity 1 24 0 410 346 0 39 chr12 19092021 19092200 -124694255 + L2 LINE L2 1813 1984 -1330 1087 303 141 12 chr12 19092271 19092760 -124693695 + L2 LINE L2 2175 2726 -588 798 267 53 50 chr12 19092772 19093169 -124693286 - L2 LINE L2 -734 2580 2183 509 290 170 26 chr12 19093134 19093469 -124692986 + L2 LINE L2 2688 3085 -228 * 1791 124 0 33 chr12 19093949 19094223 -124692232 - AluSx SINE Alu -11 301 37 270 306 142 35 chr12 19094325 19094586 -124691869 + L3b LINE CR1 1295 1583 0 416 194 20 0 chr12 19094721 19094819 -124691636 + CT-rich Low_complexity Low_complexity 1 100 0 327 49 0 0 chr12 19094847 19094888 -124691567 + (TC)n Simple_repeat Simple_repeat 1 41 0 1572 178 3 28 chr12 19094889 19095176 -124691279 - AluJb SINE Alu -32 280 1 25 0 0 0 chr12 19095267 19095292 -124691163 + AT_rich Low_complexity Low_complexity 1 25 0 1738 202 64 13 chr12 19095384 19095761 -124690694 + MSTD LTR MaLR 1 396 0 21 36 0 0 chr12 19096630 19096658 -124689797 + AT_rich Low_complexity Low_complexity 1 28 0 258 299 120 0 chr12 19097651 19097768 -124688687 + LTR16A LTR ERVL 299 429 -21 814 236 137 22 chr12 19097833 19098146 -124688309 + LTR52 LTR ERVL 3 351 -70 599 229 25 0 chr12 19098184 19098306 -124688149 - MER45A DNA AcHobo -52 126 2 269 340 51 6 chr12 19098654 19098810 -124687645 + L2 LINE L2 997 1159 -2155 335 287 180 41 chr12 19098865 19099109 -124687346 + L2 LINE L2 1636 1913 -1401 1126 296 53 78 chr12 19099109 19099916 -124686539 + L2 LINE L2 2442 3229 -84 21 57 0 0 chr12 19101075 19101110 -124685345 + AT_rich Low_complexity Low_complexity 1 35 0 375 298 71 14 chr12 19102909 19103050 -124683405 + MIR SINE MIR 19 167 -95 399 368 138 11 chr12 19104014 19104457 -124681998 + L2 LINE L2 1812 2310 -1004 1160 170 16 5 chr12 19104796 19104990 -124681465 + AluJb SINE Alu 4 199 -113 898 112 12 59 chr12 19104991 19105160 -124681295 + L1PA6 LINE L1 5992 6152 -2 1323 76 6 0 chr12 19105160 19105332 -124681123 + AluSp SINE Alu 120 292 -21 824 192 0 7 chr12 19105335 19105486 -124680969 + AluJo/FRAM SINE Alu 137 286 -16 440 291 101 64 chr12 19105506 19105974 -124680481 + L2 LINE L2 2700 3177 -95 1012 152 0 0 chr12 19106370 19106521 -124679934 + AluSg/x SINE Alu 135 285 -25 3195 195 123 51 chr12 19106678 19108187 -124678268 + MER52A LTR ERV1 1 1750 -5 315 325 9 18 chr12 19108646 19108760 -124677695 - L2 LINE L2 -2 3311 3199 22 0 0 0 chr12 19109344 19109366 -124677089 + AT_rich Low_complexity Low_complexity 1 22 0 694 231 0 20 chr12 19109413 19109560 -124676895 - FRAM SINE Alu -13 163 20 488 245 94 61 chr12 19109817 19110029 -124676426 - MER20 DNA MER1_type 0 219 1 270 359 88 24 chr12 19110679 19110849 -124675606 + MIR3 SINE MIR 13 193 -15 228 202 36 24 chr12 19112601 19112685 -124673770 + (TA)n Simple_repeat Simple_repeat 2 86 0 1062 331 90 46 chr12 19114291 19115514 -124670941 + L2 LINE L2 2022 3295 -18 263 114 71 0 chr12 19115689 19115759 -124670696 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 24 32 0 0 chr12 19116238 19116269 -124670186 + AT_rich Low_complexity Low_complexity 1 31 0 230 296 122 32 chr12 19116460 19116704 -124669751 + MLT1J LTR MaLR 172 481 -30 22 0 0 0 chr12 19116833 19116855 -124669600 + AT_rich Low_complexity Low_complexity 1 22 0 525 225 58 14 chr12 19116876 19117014 -124669441 + L1MB7 LINE L1 5998 6141 -43 407 41 0 0 chr12 19117005 19117054 -124669401 - L1PA2 LINE L1 -875 5271 5223 * 7785 12 1 0 chr12 19117054 19117948 -124668507 + L1PA2 LINE L1 5260 6155 0 186 43 0 0 chr12 19118612 19118635 -124667820 + (TA)n Simple_repeat Simple_repeat 2 24 0 2161 91 27 0 chr12 19118776 19119072 -124667383 - AluSq SINE Alu -9 304 1 215 235 0 20 chr12 19119152 19119203 -124667252 + L2 LINE L2 3264 3313 0 308 338 78 39 chr12 19122481 19122635 -124663820 + MIR SINE MIR 86 245 -17 1511 169 6 60 chr12 19125340 19125654 -124660801 - AluJb SINE Alu -15 297 1 1773 117 224 8 chr12 19126233 19126585 -124659870 - MSTA LTR MaLR 0 428 1 2291 109 0 6 chr12 19127443 19127756 -124658699 + AluSx SINE Alu 1 311 -1 23 33 0 0 chr12 19129601 19129631 -124656824 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr12 19130907 19130954 -124655501 + AT_rich Low_complexity Low_complexity 1 47 0 317 24 24 0 chr12 19131813 19131855 -124654600 + (CA)n Simple_repeat Simple_repeat 2 44 0 644 11 23 23 chr12 19132200 19132288 -124654167 + L1PA4 LINE L1 6068 6155 0 279 133 0 0 chr12 19132559 19132604 -124653851 + (TA)n Simple_repeat Simple_repeat 2 46 0 187 361 12 0 chr12 19133121 19133204 -124653251 - MER5A DNA MER1_type -51 138 55 1245 115 0 26 chr12 19134806 19134997 -124651458 + L1PA14 LINE L1 5967 6152 -9 1942 146 17 0 chr12 19135579 19135867 -124650588 + AluJb SINE Alu 1 293 -19 3871 179 27 14 chr12 19136304 19136931 -124649524 + L1MA10 LINE L1 5525 6166 -168 321 26 0 0 chr12 19136931 19136969 -124649486 + (CA)n Simple_repeat Simple_repeat 2 39 0 3871 179 27 14 chr12 19136969 19137130 -124649325 + L1MA10 LINE L1 6166 6323 -11 21130 42 9 0 chr12 19137609 19141054 -124645401 + L1PA4 LINE L1 2697 6155 0 29 0 0 0 chr12 19142585 19142614 -124643841 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 19143332 19143364 -124643091 + AT_rich Low_complexity Low_complexity 1 32 0 43 47 0 0 chr12 19143778 19143842 -124642613 + AT_rich Low_complexity Low_complexity 1 64 0 299 294 42 17 chr12 19143883 19144002 -124642453 - MIR SINE MIR -3 259 138 2274 105 0 0 chr12 19144053 19144349 -124642106 + AluSg SINE Alu 3 298 -12 423 132 0 0 chr12 19145246 19145314 -124641141 + (TA)n Simple_repeat Simple_repeat 2 69 0 234 179 51 90 chr12 19146006 19146084 -124640371 + MER110A LTR ERV1 41 115 -353 894 288 67 72 chr12 19146101 19146214 -124640241 - MLT1E2 LTR MaLR -9 617 505 1789 167 3 3 chr12 19146214 19146520 -124639935 - AluSx SINE Alu 0 306 1 894 288 67 72 chr12 19146520 19147014 -124639441 - MLT1E2 LTR MaLR -121 505 49 320 296 59 46 chr12 19147202 19147478 -124638977 + MER110A LTR ERV1 218 491 0 228 319 11 43 chr12 19148307 19148401 -124638054 - MIR SINE MIR -110 152 62 425 329 99 63 chr12 19148412 19148450 -124638005 + HERV16 LTR ERVL 189 224 -4772 811 278 32 0 chr12 19148450 19148666 -124637789 - MER58A DNA MER1_type -1 223 1 425 329 99 63 chr12 19148666 19149313 -124637142 + HERV16 LTR ERVL 224 899 -4097 3335 221 32 5 chr12 19149500 19150290 -124636165 - L1M2 LINE L1 -1752 4394 3584 * 3406 225 29 14 chr12 19150269 19151157 -124635298 + L1M2 LINE L1 4381 5282 -864 370 138 56 50 chr12 19151161 19151321 -124635134 + (TATAA)n Simple_repeat Simple_repeat 4 164 0 1454 204 114 8 chr12 19151342 19151729 -124634726 + L1M2 LINE L1 5313 5740 -572 448 343 35 68 chr12 19151742 19152171 -124634284 + L1MA4A LINE L1 15 429 -6739 2047 265 37 31 chr12 19152506 19153713 -124632742 + L1MA4A LINE L1 1619 2843 -4325 578 278 18 9 chr12 19154176 19154403 -124632052 + L1PA15-16 LINE L1 2897 3125 -4440 2984 290 118 33 chr12 19154640 19156214 -124630241 + L1M2b LINE L1 1 1708 -5501 318 321 115 36 chr12 19156215 19156380 -124630075 + L1M2b LINE L1 1210 1387 -5822 3009 237 40 16 chr12 19156383 19156804 -124629651 + L1PA15-16 LINE L1 3077 3486 -4079 2010 126 3 7 chr12 19156804 19157090 -124629365 + AluSx SINE Alu 1 285 -27 3009 237 40 16 chr12 19157090 19158054 -124628401 + L1PA15-16 LINE L1 3486 4588 -2977 328 211 39 0 chr12 19158058 19158162 -124628293 + GA-rich Low_complexity Low_complexity 1 108 0 17766 126 53 14 chr12 19158286 19158947 -124627508 + MER41C-int LTR ERV1 3 637 -7119 402 39 0 0 chr12 19158947 19158999 -124627456 + (CA)n Simple_repeat Simple_repeat 2 53 0 17766 126 53 14 chr12 19158999 19161180 -124625275 + MER41C-int LTR ERV1 637 2956 -4800 1251 131 5 5 chr12 19161166 19161364 -124625091 + MER41C-int LTR ERV1 4244 4441 -3315 * 9126 88 16 5 chr12 19161357 19162588 -124623867 + MER41C-int LTR ERV1 5151 6395 -1361 3817 91 33 4 chr12 19162579 19163118 -124623337 + MER41C-int LTR ERV1 7199 7753 -3 * 3128 152 29 16 chr12 19163147 19163694 -124622761 + MER41C LTR ERV1 1 554 0 8010 203 40 9 chr12 19163710 19164162 -124622293 + L1MA4A LINE L1 4231 4667 -2500 369 43 0 0 chr12 19164162 19164209 -124622246 + (CA)n Simple_repeat Simple_repeat 2 48 0 354 23 0 0 chr12 19164208 19164251 -124622204 + (GA)n Simple_repeat Simple_repeat 2 44 0 * 8010 203 40 9 chr12 19164209 19165711 -124620744 + L1MA4A LINE L1 4667 6203 -964 2076 160 42 5 chr12 19165833 19166233 -124620222 + L1MA4A LINE L1 6674 7088 -236 8178 165 47 13 chr12 19166234 19167731 -124618724 - Tigger1 DNA MER2_type -867 1551 3 2156 106 7 0 chr12 19167755 19168048 -124618407 + AluSg SINE Alu 2 296 -14 3660 204 66 13 chr12 19168070 19169201 -124617254 + L1M2 LINE L1 4262 5458 -743 329 158 12 0 chr12 19169323 19169405 -124617050 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 719 345 62 17 chr12 19169439 19169940 -124616515 + HERV16 LTR ERVL 1688 2260 -2918 256 386 102 14 chr12 19170272 19170567 -124615888 + L2 LINE L2 2549 2869 -445 201 356 35 0 chr12 19170819 19170934 -124615521 + MIR SINE MIR 13 131 -131 2237 173 20 43 chr12 19170958 19171397 -124615058 - MSTB1 LTR MaLR 0 432 4 6602 221 70 12 chr12 19171400 19172955 -124613500 - MSTB1-int LTR MaLR 0 1651 6 2003 190 38 14 chr12 19172955 19173377 -124613078 - MSTB1 LTR MaLR 0 432 1 186 354 15 0 chr12 19173591 19173656 -124612799 + L2 LINE L2 3193 3258 -14 184 179 0 0 chr12 19175286 19175314 -124611141 - MIR SINE MIR -26 236 209 210 189 14 27 chr12 19175342 19175416 -124611039 + (TA)n Simple_repeat Simple_repeat 2 74 0 396 288 32 0 chr12 19175458 19175583 -124610872 - MIR SINE MIR -122 140 12 2182 110 52 25 chr12 19175792 19176157 -124610298 - THE1C LTR MaLR 0 375 1 24 32 0 0 chr12 19177249 19177280 -124609175 + AT_rich Low_complexity Low_complexity 1 31 0 252 122 0 0 chr12 19179735 19179776 -124606679 - L2 LINE L2 -1 3312 3272 23 68 0 0 chr12 19180482 19180526 -124605929 + AT_rich Low_complexity Low_complexity 1 44 0 210 193 0 0 chr12 19181462 19181519 -124604936 + (TA)n Simple_repeat Simple_repeat 1 57 0 21 0 0 0 chr12 19182195 19182216 -124604239 + AT_rich Low_complexity Low_complexity 1 21 0 319 239 11 65 chr12 19183021 19183113 -124603342 + MER8 DNA MER2_type 1 87 -152 1913 248 95 15 chr12 19183136 19183737 -124602718 - MER82 DNA MER2_type -4 649 1 454 353 71 50 chr12 19183934 19184690 -124601765 - L2 LINE L2 -8 3305 2535 315 336 8 16 chr12 19184726 19184854 -124601601 - MIR SINE MIR -112 150 24 1483 195 0 10 chr12 19185065 19185357 -124601098 - L1PA16 LINE L1 -11 6155 5867 189 74 0 0 chr12 19185497 19185524 -124600931 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1810 153 11 3 chr12 19185526 19185808 -124600647 - AluSq SINE Alu -29 284 1 1903 238 51 30 chr12 19185878 19186450 -124600005 - L1MD3 LINE L1 -15 7980 7397 432 211 33 0 chr12 19186470 19186560 -124599895 - MLT1F1 LTR MaLR -470 97 5 648 278 17 0 chr12 19186563 19186743 -124599712 - L1MD3 LINE L1 -716 7279 7097 2141 80 0 4 chr12 19186941 19187215 -124599240 + AluY SINE Alu 34 306 -5 243 61 0 0 chr12 19187694 19187727 -124598728 + (CA)n Simple_repeat Simple_repeat 2 34 0 195 156 0 0 chr12 19189459 19189491 -124596964 - L2 LINE L2 -17 3296 3265 512 283 151 5 chr12 19189513 19189718 -124596737 + MIR SINE MIR 28 262 0 24 53 0 0 chr12 19189827 19189865 -124596590 + AT_rich Low_complexity Low_complexity 1 38 0 211 124 66 25 chr12 19189963 19190084 -124596371 + (TA)n Simple_repeat Simple_repeat 2 127 0 468 372 53 13 chr12 19190446 19190750 -124595705 + L2 LINE L2 2538 2853 -461 197 204 0 45 chr12 19191190 19191234 -124595221 + MIR SINE MIR 197 238 -24 22 35 0 0 chr12 19191288 19191317 -124595138 + AT_rich Low_complexity Low_complexity 1 29 0 1305 272 24 62 chr12 19192034 19192453 -124594002 - MER70B LTR ERVL -162 416 14 294 148 0 0 chr12 19192683 19192737 -124593718 + (CA)n Simple_repeat Simple_repeat 2 55 0 23 0 0 0 chr12 19193753 19193776 -124592679 + AT_rich Low_complexity Low_complexity 1 23 0 21 82 0 0 chr12 19195021 19195070 -124591385 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr12 19196657 19196689 -124589766 + AT_rich Low_complexity Low_complexity 1 32 0 264 30 0 0 chr12 19196968 19197001 -124589454 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr12 19198449 19198470 -124587985 + AT_rich Low_complexity Low_complexity 1 21 0 198 308 111 26 chr12 19198540 19198657 -124587798 + MIR SINE MIR 61 187 -75 1149 211 81 36 chr12 19199044 19199352 -124587103 - MER2 DNA MER2_type -23 322 1 348 239 138 73 chr12 19200453 19200742 -124585713 - L1ME3A LINE L1 0 6170 5863 355 265 142 37 chr12 19201071 19201233 -124585222 + MER5A DNA MER1_type 9 187 -2 1893 211 60 16 chr12 19201460 19201944 -124584511 - MLT1D LTR MaLR 0 505 1 267 394 64 42 chr12 19202382 19202680 -124583775 - L2 LINE L2 -344 2970 2680 1675 194 0 16 chr12 19202680 19202984 -124583471 + AluJo SINE Alu 1 299 -13 267 394 64 42 chr12 19202984 19203279 -124583176 - L2 LINE L2 -634 2680 2364 279 295 48 19 chr12 19203465 19203570 -124582885 + L2 LINE L2 3191 3298 -15 578 286 78 10 chr12 19203979 19204171 -124582284 + MIR SINE MIR 32 236 -26 21 0 0 0 chr12 19204171 19204192 -124582263 + AT_rich Low_complexity Low_complexity 1 21 0 267 79 0 0 chr12 19205058 19205096 -124581359 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chr12 19205321 19205343 -124581112 + (TATG)n Simple_repeat Simple_repeat 3 24 0 2106 117 0 0 chr12 19205350 19205633 -124580822 - AluSx SINE Alu -29 283 1 189 269 19 0 chr12 19205931 19205983 -124580472 - L2 LINE L2 0 3313 3261 1808 178 7 0 chr12 19206195 19206499 -124579956 + AluJo SINE Alu 1 306 -6 1079 265 158 33 chr12 19206692 19207820 -124578635 + L1ME3A LINE L1 4890 6164 -6 26 0 0 0 chr12 19207907 19207933 -124578522 + AT_rich Low_complexity Low_complexity 1 26 0 470 305 120 6 chr12 19207956 19208123 -124578332 - MIR SINE MIR -58 204 19 1040 261 68 32 chr12 19208159 19208569 -124577886 - MLT1C LTR MaLR -1 466 42 23 0 0 0 chr12 19208847 19208870 -124577585 + AT_rich Low_complexity Low_complexity 1 23 0 461 347 86 0 chr12 19209511 19209733 -124576722 - MIR SINE MIR -15 247 7 504 261 93 101 chr12 19209908 19210681 -124575774 + LTR41 LTR ERVL 1 767 -6 25 0 0 0 chr12 19211425 19211450 -124575005 + AT_rich Low_complexity Low_complexity 1 25 0 215 287 184 11 chr12 19211616 19211703 -124574752 - L3b LINE CR1 -147 1436 1335 31 0 0 0 chr12 19211999 19212030 -124574425 + AT_rich Low_complexity Low_complexity 1 31 0 230 233 20 7 chr12 19213327 19213477 -124572978 + (TA)n Simple_repeat Simple_repeat 2 153 0 11709 199 35 13 chr12 19214577 19218360 -124568095 - L1MA5 LINE L1 -5 6295 2419 3804 173 32 17 chr12 19218410 19219596 -124566859 + L1MA8 LINE L1 4874 6072 -219 * 6518 165 35 30 chr12 19219592 19220981 -124565474 - L1P3 LINE L1 -4734 1141 67 2270 68 0 14 chr12 19220981 19221277 -124565178 - AluY SINE Alu -1 310 19 6518 165 35 30 chr12 19221277 19221345 -124565110 - L1P3 LINE L1 -5808 67 1 327 150 88 0 chr12 19221343 19221423 -124565032 + L1MA8 LINE L1 6057 6143 -148 * 1800 168 98 21 chr12 19221424 19221842 -124564613 - LTR7 LTR ERV1 0 450 1 3332 111 8 10 chr12 19221842 19222364 -124564091 - HERVH LTR ERV1 0 7713 7193 2949 202 28 36 chr12 19222349 19222966 -124563489 - HERVH LTR ERV1 -2693 5020 4408 * 2341 71 3 3 chr12 19222966 19223260 -124563195 + AluY SINE Alu 1 294 -17 2949 202 28 36 chr12 19223260 19223355 -124563100 - HERVH LTR ERV1 -3305 4408 4314 3871 11 0 0 chr12 19223452 19223892 -124562563 - L1PA2 LINE L1 -4 6151 5712 11107 29 5 0 chr12 19223892 19225225 -124561230 + L1P LINE L1 3194 4532 -1614 8075 215 16 16 chr12 19225237 19227288 -124559167 - HERVH LTR ERV1 -3468 5148 2255 2107 87 75 83 chr12 19227288 19227689 -124558766 - LTR14B LTR ERVK 0 608 1 8333 142 55 37 chr12 19227692 19229587 -124556868 - HERVH LTR ERV1 -5454 2259 1 1919 165 96 21 chr12 19229587 19230006 -124556449 - LTR7 LTR ERV1 0 450 1 461 163 111 15 chr12 19230006 19230141 -124556314 + L1MA8 LINE L1 6140 6287 -4 25 0 0 0 chr12 19230367 19230392 -124556063 + AT_rich Low_complexity Low_complexity 1 25 0 280 119 34 0 chr12 19230893 19230952 -124555503 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 1315 244 37 26 chr12 19231021 19231369 -124555086 + MLT1B LTR MaLR 10 361 -29 587 371 63 43 chr12 19231434 19232033 -124554422 + L2 LINE L2 186 796 -2518 1735 199 11 20 chr12 19232046 19232397 -124554058 - MLT1A1 LTR MaLR -13 352 5 1459 259 62 36 chr12 19232585 19235080 -124551375 - L1MDa LINE L1 -3831 2813 23 2196 61 44 10 chr12 19235196 19235490 -124550965 - AluY SINE Alu -7 304 1 1182 260 24 68 chr12 19235727 19236139 -124550316 - MSTD LTR MaLR -2 394 1 25 51 0 0 chr12 19236623 19236662 -124549793 + AT_rich Low_complexity Low_complexity 1 39 0 413 0 39 0 chr12 19237875 19237927 -124548528 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 188 292 14 28 chr12 19238774 19238846 -124547609 + L2 LINE L2 2888 2958 -314 191 340 109 39 chr12 19240165 19240477 -124545978 - L2 LINE L2 -725 2589 2256 2688 266 37 41 chr12 19241112 19242591 -124543864 + L1MD2 LINE L1 4661 6127 -232 357 325 35 0 chr12 19243942 19244056 -124542399 + L2 LINE L2 3192 3309 -4 21 36 0 0 chr12 19244186 19244214 -124542241 + AT_rich Low_complexity Low_complexity 1 28 0 255 180 11 45 chr12 19244538 19244627 -124541828 + GA-rich Low_complexity Low_complexity 2 87 0 275 315 23 2 chr12 19244803 19244902 -124541553 - MIR SINE MIR -68 140 41 277 298 111 29 chr12 19244908 19245079 -124541376 + MIR SINE MIR 64 248 -14 1197 235 131 75 chr12 19247162 19248066 -124538389 + LTR1B LTR ERV1 1 1020 0 26 30 0 0 chr12 19248649 19248682 -124537773 + AT_rich Low_complexity Low_complexity 1 33 0 463 297 36 42 chr12 19250395 19250587 -124535868 - MIR SINE MIR -37 225 35 234 0 0 0 chr12 19250617 19250643 -124535812 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3735 16 0 2 chr12 19250643 19251076 -124535379 - L1PA2 LINE L1 -13 6142 5711 21 0 0 0 chr12 19252306 19252327 -124534128 + AT_rich Low_complexity Low_complexity 1 21 0 667 351 22 36 chr12 19253472 19253717 -124532738 + HERVL LTR ERVL 4853 5089 -565 2002 109 21 0 chr12 19253717 19254001 -124532454 - AluY SINE Alu -21 290 1 667 351 22 36 chr12 19254001 19254253 -124532202 + HERVL LTR ERVL 5089 5343 -311 483 282 66 28 chr12 19254473 19254654 -124531801 + LTR33 LTR ERVL 8 195 -326 1531 247 66 18 chr12 19255144 19255819 -124530636 + L1MCa LINE L1 2339 3046 -3380 811 208 6 0 chr12 19255839 19255998 -124530457 + FRAM SINE Alu 8 167 -9 2705 85 6 0 chr12 19256008 19256361 -124530094 - THE1A LTR MaLR 0 355 1 8798 116 139 1 chr12 19256361 19256830 -124529625 - THE1A-int LTR MaLR 0 1580 1177 210 37 0 0 chr12 19256830 19256857 -124529598 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 8798 116 139 1 chr12 19256857 19257776 -124528679 - THE1A-int LTR MaLR -403 1177 1 2315 122 32 0 chr12 19257776 19258120 -124528335 - THE1A LTR MaLR 0 355 1 1261 224 86 65 chr12 19258136 19258377 -124528078 + L1MCa LINE L1 3075 3309 -3117 2021 127 13 3 chr12 19258377 19258676 -124527779 - AluSx SINE Alu -9 303 2 1261 224 86 65 chr12 19258676 19259037 -124527418 + L1MCa LINE L1 3309 3690 -2736 * 1705 185 65 3 chr12 19259034 19259417 -124527038 + L1MC1 LINE L1 5926 6332 -1 371 225 55 39 chr12 19259434 19259616 -124526839 + L1MEc LINE L1 2445 2614 -3926 * 587 261 130 15 chr12 19259591 19259990 -124526465 + L1MEc LINE L1 3568 4012 -2528 362 194 14 0 chr12 19260166 19260238 -124526217 + MSTA LTR MaLR 1 73 -355 3180 164 5 55 chr12 19260238 19260860 -124525595 + MSTA-int LTR MaLR 1061 1651 0 2191 163 33 37 chr12 19260861 19260891 -124525564 + MSTA LTR MaLR 2 31 -397 1895 85 111 4 chr12 19260891 19261162 -124525293 - AluYa8 SINE Alu -10 300 1 2191 163 33 37 chr12 19261162 19261560 -124524895 + MSTA LTR MaLR 31 428 0 794 224 66 76 chr12 19261563 19261867 -124524588 - LTR52 LTR ERVL -98 323 23 1898 155 11 33 chr12 19261908 19261957 -124524498 - L1MB1 LINE L1 0 6168 6119 1768 164 3 20 chr12 19261957 19262255 -124524200 - AluSx SINE Alu -19 293 1 1898 155 11 33 chr12 19262255 19262567 -124523888 - L1MB1 LINE L1 -49 6119 5815 256 168 84 0 chr12 19262637 19262732 -124523723 + (TA)n Simple_repeat Simple_repeat 1 103 0 189 107 33 74 chr12 19262749 19262871 -124523584 + (TTATA)n Simple_repeat Simple_repeat 1 117 0 324 213 61 6 chr12 19262875 19263039 -124523416 + (TA)n Simple_repeat Simple_repeat 2 174 0 1944 199 38 59 chr12 19263039 19263769 -124522686 - L1MB1 LINE L1 -391 5777 5050 1952 128 68 11 chr12 19263769 19264122 -124522333 + THE1C LTR MaLR 3 375 0 1944 199 38 59 chr12 19264122 19264308 -124522147 - L1MB1 LINE L1 -1118 5050 4862 * 2573 192 23 0 chr12 19264299 19264826 -124521629 + L1MEc LINE L1 4181 4719 -1821 683 173 33 61 chr12 19264830 19265359 -124521096 + L1MA7 LINE L1 5412 6046 -245 1923 175 0 0 chr12 19265359 19265667 -124520788 - AluSx SINE Alu -3 309 2 683 173 33 61 chr12 19265667 19265857 -124520598 + L1MA7 LINE L1 6046 6240 -51 1724 285 96 36 chr12 19265880 19267225 -124519230 + L1MEc LINE L1 5132 6557 -7 584 126 11 21 chr12 19267225 19267320 -124519135 - FLAM SINE Alu -11 132 39 21 36 0 0 chr12 19267830 19267858 -124518597 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr12 19268074 19268106 -124518349 + AT_rich Low_complexity Low_complexity 1 32 0 940 161 7 0 chr12 19268128 19268277 -124518178 - AluSg/x SINE Alu -11 301 152 2292 59 0 7 chr12 19268285 19268575 -124517880 - AluYb8 SINE Alu 0 318 31 262 91 11 5 chr12 19268575 19268622 -124517833 + Alu SINE Alu 3 37 -263 25 0 0 0 chr12 19270129 19270154 -124516301 + AT_rich Low_complexity Low_complexity 1 25 0 1669 154 17 17 chr12 19270602 19270901 -124515554 + AluJb SINE Alu 1 299 -13 369 251 25 23 chr12 19270902 19271126 -124515329 - ERVL LTR ERVL -3679 2085 1799 * 1193 306 64 8 chr12 19271122 19271592 -124514863 - ERVL LTR ERVL -4360 1404 909 595 277 13 0 chr12 19271648 19271803 -124514652 + MER58B DNA MER1_type 167 323 -18 1380 291 35 33 chr12 19271803 19272353 -124514102 + L1MCb LINE L1 4 554 -5491 5390 258 87 31 chr12 19272415 19274257 -124512198 + L1MCb LINE L1 553 2290 -4274 2264 71 3 0 chr12 19274257 19274578 -124511877 + AluY SINE Alu 2 323 0 5390 258 87 31 chr12 19274578 19277276 -124509179 + L1MCb LINE L1 2290 5335 -1229 23 33 0 0 chr12 19277303 19277333 -124509122 + AT_rich Low_complexity Low_complexity 1 30 0 1004 251 22 38 chr12 19277394 19277764 -124508691 + L1M4 LINE L1 2464 2827 -3319 1956 127 7 0 chr12 19277767 19278043 -124508412 + AluSq SINE Alu 5 282 -31 28 0 0 0 chr12 19278055 19278083 -124508372 + AT_rich Low_complexity Low_complexity 1 28 0 839 176 21 16 chr12 19278103 19278291 -124508164 - L1MA4 LINE L1 -14 6286 6098 * 2759 259 61 17 chr12 19278288 19279433 -124507022 + L1M4 LINE L1 2848 4043 -2103 2035 229 90 71 chr12 19279432 19280375 -124506080 + L1MC3 LINE L1 6813 7773 -12 * 405 318 8 24 chr12 19280525 19280651 -124505804 - ERVL LTR ERVL -5061 703 580 683 329 32 22 chr12 19280890 19281203 -124505252 - ERVL LTR ERVL -2903 2861 2546 2926 176 49 3 chr12 19281919 19282514 -124503941 + L1MA6 LINE L1 5679 6300 0 1842 212 59 162 chr12 19282749 19283973 -124502482 - MER52A LTR ERV1 -2 1753 656 1703 197 34 8 chr12 19284292 19284647 -124501808 + MLT1A1 LTR MaLR 2 365 0 21 36 0 0 chr12 19284986 19285014 -124501441 + AT_rich Low_complexity Low_complexity 1 28 0 438 20 0 0 chr12 19285738 19285789 -124500666 + (TG)n Simple_repeat Simple_repeat 2 52 0 384 119 0 0 chr12 19286682 19286712 -124499743 + (TA)n Simple_repeat Simple_repeat 1 89 0 384 119 0 0 chr12 19286712 19286771 -124499684 + (TA)n Simple_repeat Simple_repeat 2 60 0 1160 217 21 3 chr12 19286838 19287124 -124499331 - L1MD1 LINE L1 -1 6241 5951 1120 173 26 67 chr12 19287304 19287645 -124498810 - L1MD1 LINE L1 -420 5822 5496 641 319 19 5 chr12 19287679 19287889 -124498566 + LTR57-int LTR ERVL 1853 2065 -3278 566 360 46 41 chr12 19288075 19289061 -124497394 + LTR57-int LTR ERVL 3130 4100 -1243 306 244 0 49 chr12 19289807 19289889 -124496566 + MER4B-int LTR ERV1 5998 6075 -683 936 272 101 17 chr12 19289891 19290299 -124496156 + LTR47B LTR ERVL 2 443 0 837 256 30 0 chr12 19290299 19290611 -124495844 - L1MC/D LINE L1 -743 5797 5567 4335 171 17 18 chr12 19290632 19291511 -124494944 - L1MA8 LINE L1 -5 6286 5409 1508 189 55 3 chr12 19291511 19291876 -124494579 - L1MA8 LINE L1 -1098 5048 4665 * 2228 176 41 10 chr12 19291874 19292381 -124494074 + L1MA8 LINE L1 4145 4667 -1479 * 3818 255 34 22 chr12 19292375 19293737 -124492718 - L1MC/D LINE L1 -978 5562 4185 2162 149 31 8 chr12 19293737 19294093 -124492362 - THE1B LTR MaLR 0 364 1 10253 95 8 86 chr12 19294099 19295805 -124490650 - THE1B-int LTR MaLR -7 1573 1 2295 132 28 8 chr12 19295805 19296162 -124490293 - THE1B LTR MaLR 0 364 1 397 179 0 0 chr12 19296216 19296310 -124490145 - AluSg/x SINE Alu 0 312 219 1541 293 37 38 chr12 19296311 19297237 -124489218 - L1MDa LINE L1 -5413 1127 37 33 25 0 0 chr12 19297249 19297289 -124489166 + AT_rich Low_complexity Low_complexity 1 40 0 1637 148 161 75 chr12 19297329 19297701 -124488754 - MER4A LTR ERV1 0 664 261 525 175 21 10 chr12 19297701 19297798 -124488657 - MER4A LTR ERV1 -566 98 1 21 57 0 0 chr12 19298656 19298691 -124487764 + AT_rich Low_complexity Low_complexity 1 35 0 995 329 28 46 chr12 19299962 19300167 -124486288 - L2 LINE L2 0 3313 3106 2291 107 3 0 chr12 19300167 19300477 -124485978 + AluSp SINE Alu 3 313 0 995 329 28 46 chr12 19300477 19300770 -124485685 - L2 LINE L2 -207 3106 2824 1097 308 163 6 chr12 19300799 19301296 -124485159 - L2 LINE L2 -778 2536 1962 458 342 16 0 chr12 19301291 19301475 -124484980 + L2 LINE L2 1841 2027 -1287 * 3119 153 32 44 chr12 19302446 19302647 -124483808 - L1MC1 LINE L1 -1 6332 6130 2111 117 0 3 chr12 19302647 19302946 -124483509 - AluSx SINE Alu -14 298 1 3119 153 32 44 chr12 19302946 19303430 -124483025 - L1MC1 LINE L1 -203 6130 5655 3008 156 31 2 chr12 19303733 19304245 -124482210 - MER1A DNA MER1_type 0 527 1 469 314 82 79 chr12 19304246 19304587 -124481868 + L2 LINE L2 2927 3268 -4 2441 116 6 6 chr12 19304895 19305258 -124481197 + THE1B LTR MaLR 1 363 -1 427 260 44 61 chr12 19305558 19305739 -124480716 - MLT1K LTR MaLR 0 588 411 182 299 45 15 chr12 19305920 19305987 -124480468 + L3 LINE CR1 190 258 -1319 1928 176 84 0 chr12 19307993 19308386 -124478069 - MSTB LTR MaLR 0 426 1 2093 185 82 13 chr12 19308630 19309061 -124477394 - MLT1C LTR MaLR 0 426 9 186 403 106 36 chr12 19309452 19309951 -124476504 + L2 LINE L2 2221 2754 -560 906 143 0 0 chr12 19309967 19310107 -124476348 - AluSp/q SINE Alu -13 300 161 237 73 91 0 chr12 19310123 19310178 -124476277 + (TTATA)n Simple_repeat Simple_repeat 5 64 0 428 364 36 38 chr12 19310347 19310712 -124475743 - L2 LINE L2 0 3313 2950 191 285 98 24 chr12 19311559 19311682 -124474773 - L2 LINE L2 -809 2505 2374 353 338 114 32 chr12 19311774 19312238 -124474217 + L1MEc LINE L1 856 1357 -5039 3821 28 15 0 chr12 19312451 19312914 -124473541 + L1PA4 LINE L1 5685 6154 -1 215 214 67 0 chr12 19313053 19313142 -124473313 + (TA)n Simple_repeat Simple_repeat 1 95 0 1220 281 111 28 chr12 19313329 19314541 -124471914 + L1MEc LINE L1 2631 3943 -2272 404 307 111 48 chr12 19317032 19317491 -124468964 - HAL1 LINE L1 -109 2398 1911 300 262 183 0 chr12 19317651 19317777 -124468678 - HAL1 LINE L1 -860 1647 1499 1220 194 96 97 chr12 19317780 19318193 -124468262 - MSTD LTR MaLR 0 396 1 246 335 76 25 chr12 19318283 19318441 -124468014 - HAL1 LINE L1 -1958 549 384 212 333 126 16 chr12 19320049 19320232 -124466223 + MIR SINE MIR 48 250 -12 2583 20 7 0 chr12 19320667 19320969 -124465486 - AluY SINE Alu -7 304 1 569 105 0 12 chr12 19322823 19322909 -124463546 + AluSc SINE Alu 213 297 -12 252 274 128 43 chr12 19324098 19324215 -124462240 + L2 LINE L2 3187 3313 0 660 306 86 5 chr12 19324508 19324730 -124461725 + MIR SINE MIR 15 254 -8 27 73 0 0 chr12 19325419 19325474 -124460981 + AT_rich Low_complexity Low_complexity 1 55 0 2050 76 14 10 chr12 19325482 19325773 -124460682 + AluY SINE Alu 1 292 -19 210 37 0 0 chr12 19325779 19325806 -124460649 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 285 169 0 0 chr12 19326217 19326276 -124460179 + (TA)n Simple_repeat Simple_repeat 1 59 0 26 30 0 0 chr12 19326452 19326485 -124459970 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr12 19326523 19326544 -124459911 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr12 19326664 19326694 -124459761 + AT_rich Low_complexity Low_complexity 1 30 0 632 77 11 0 chr12 19328122 19328213 -124458242 + (GGAA)n Simple_repeat Simple_repeat 4 95 0 23 0 0 0 chr12 19328616 19328639 -124457816 + AT_rich Low_complexity Low_complexity 1 23 0 1184 327 168 19 chr12 19328845 19329619 -124456836 + L2 LINE L2 1928 2816 -498 1738 212 26 0 chr12 19329752 19330096 -124456359 - MLT1A1 LTR MaLR -9 356 4 203 346 115 0 chr12 19330517 19330595 -124455860 + L2 LINE L2 3184 3270 -2 2606 323 108 35 chr12 19331482 19331797 -124454658 - L2 LINE L2 -8 3305 3015 2106 241 39 49 chr12 19331797 19332490 -124453965 - MER76 LTR ERV -2 686 1 2606 323 108 35 chr12 19332490 19334239 -124452216 - L2 LINE L2 -298 3015 1084 549 267 5 37 chr12 19334795 19334982 -124451473 - LOR1-int LTR ERV1 -6647 1473 1293 10239 76 14 1 chr12 19435251 19436560 -124349895 - LOR1-int LTR ERV1 -4872 3754 2430 8621 74 29 5 chr12 19436546 19437708 -124348747 - LOR1-int LTR ERV1 -6613 2013 824 * 4777 66 55 6 chr12 19437744 19438398 -124348057 - HERVK14 LTR ERVK -5160 785 100 351 203 25 0 chr12 19438398 19438477 -124347978 - L1M3 LINE L1 -641 5693 5613 * 423 191 0 11 chr12 19438476 19438581 -124347874 - L1MB1 LINE L1 -215 5963 5860 * 654 27 0 0 chr12 19438571 19438646 -124347809 - HERVK14 LTR ERVK -5870 75 1 1995 97 81 88 chr12 19438646 19439040 -124347415 - LTR14B LTR ERVK 0 608 7 21 0 0 0 chr12 19439422 19439443 -124347012 + AT_rich Low_complexity Low_complexity 1 21 0 454 255 38 0 chr12 19439511 19439663 -124346792 - L1ME2 LINE L1 -1 6161 6003 343 209 12 35 chr12 19439817 19439903 -124346552 + L2 LINE L2 3229 3312 -1 657 314 36 61 chr12 19440161 19440524 -124345931 - L2 LINE L2 -17 3296 2943 1570 278 90 8 chr12 19440529 19441062 -124345393 - L1MEc LINE L1 -5686 710 134 247 268 46 108 chr12 19441062 19441256 -124345199 + L2 LINE L2 3132 3313 0 8514 201 34 63 chr12 19441640 19442085 -124344370 - L1MB1 LINE L1 -19 7568 7112 6393 121 36 22 chr12 19442085 19443141 -124343314 + MER11C LTR ERVK 1 1071 0 8514 201 34 63 chr12 19443141 19444232 -124342223 - L1MB1 LINE L1 -475 7112 5992 1737 166 19 22 chr12 19444232 19444545 -124341910 - AluSx SINE Alu 0 312 1 8514 201 34 63 chr12 19444545 19446396 -124340059 - L1MB1 LINE L1 -1595 5992 4279 2666 263 66 16 chr12 19446386 19447984 -124338471 - L1MB1 LINE L1 -4046 3519 2012 * 785 321 40 51 chr12 19448520 19448969 -124337486 - L1MB1 LINE L1 -5697 1799 1356 349 298 137 32 chr12 19448987 19449111 -124337344 + L2 LINE L2 3126 3262 -10 2289 118 0 0 chr12 19449781 19450087 -124336368 - AluSc SINE Alu -3 306 1 210 71 0 0 chr12 19450521 19450549 -124335906 + (TC)n Simple_repeat Simple_repeat 1 28 0 322 378 67 22 chr12 19451440 19451710 -124334745 - L2 LINE L2 -453 2861 2580 323 268 129 57 chr12 19451733 19451942 -124334513 - MIR SINE MIR -3 259 36 448 315 87 34 chr12 19452022 19452343 -124334112 - L2 LINE L2 -785 2529 2192 1882 243 24 21 chr12 19452346 19452806 -124333649 + L1M3b LINE L1 4 465 -5811 207 100 0 0 chr12 19452806 19452836 -124333619 + (CA)n Simple_repeat Simple_repeat 2 31 0 309 326 0 0 chr12 19453087 19453176 -124333279 - L1MC4 LINE L1 -1339 6703 6615 204 125 0 0 chr12 19453177 19453209 -124333246 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 2677 181 50 21 chr12 19453359 19453977 -124332478 - L1MA7 LINE L1 -10 6281 5646 4357 232 32 19 chr12 19454015 19455509 -124330946 + L1PA13 LINE L1 1208 2729 -4068 439 149 16 3 chr12 19455532 19455622 -124330833 + MSTC LTR MaLR 338 428 0 2111 126 0 10 chr12 19455798 19456099 -124330356 - AluSx SINE Alu -12 300 3 181 227 45 0 chr12 19456647 19456691 -124329764 + L2 LINE L2 3259 3304 -9 285 272 12 0 chr12 19457506 19457587 -124328868 + L1ME LINE L1 5518 5599 -522 1568 220 0 0 chr12 19457679 19457979 -124328476 + AluJb SINE Alu 3 302 -10 22 56 0 0 chr12 19458924 19458960 -124327495 + AT_rich Low_complexity Low_complexity 1 36 0 2315 70 23 0 chr12 19459226 19459527 -124326928 - AluY SINE Alu -3 308 1 228 242 30 15 chr12 19459527 19459593 -124326862 - L1ME LINE L1 -537 5584 5518 26 0 0 0 chr12 19460892 19460918 -124325537 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr12 19460933 19460970 -124325485 + AT_rich Low_complexity Low_complexity 1 37 0 384 312 123 26 chr12 19460971 19461125 -124325330 + MIR SINE MIR 6 174 -88 24 77 0 0 chr12 19461135 19461187 -124325268 + AT_rich Low_complexity Low_complexity 1 52 0 323 318 0 9 chr12 19461513 19461623 -124324832 + GA-rich Low_complexity Low_complexity 4 112 0 964 55 16 0 chr12 19461623 19461751 -124324704 + L1PA14 LINE L1 6015 6144 -17 24 32 0 0 chr12 19461756 19461787 -124324668 + AT_rich Low_complexity Low_complexity 1 31 0 557 130 32 32 chr12 19461874 19461997 -124324458 - L1MB1 LINE L1 -2 6166 6044 276 250 29 29 chr12 19463878 19463982 -124322473 + T-rich Low_complexity Low_complexity 3 106 0 202 200 0 0 chr12 19464224 19464264 -124322191 + CT-rich Low_complexity Low_complexity 1 40 0 4766 127 60 19 chr12 19464273 19465063 -124321392 - LTR12 LTR ERV1 0 826 5 14572 96 18 11 chr12 19465069 19467656 -124318799 - HERV9 LTR ERV1 0 8399 504 * 34654 83 1 4 chr12 19467655 19472237 -124314218 - HERV9 LTR ERV1 -2082 6317 1749 459 287 77 24 chr12 19472487 19472696 -124313759 + MIR SINE MIR 32 251 -11 21 36 0 0 chr12 19474051 19474079 -124312376 + AT_rich Low_complexity Low_complexity 1 28 0 349 159 32 0 chr12 19474224 19474287 -124312168 - L1MA4 LINE L1 -362 5938 5874 301 196 31 0 chr12 19474287 19474383 -124312072 + L1MA3 LINE L1 6206 6305 0 346 316 85 62 chr12 19474595 19475076 -124311379 + L1MEc LINE L1 1000 1491 -5116 338 303 29 63 chr12 19475160 19475335 -124311120 + L1MEc LINE L1 1409 1577 -4849 441 0 0 0 chr12 19475335 19475384 -124311071 + (CA)n Simple_repeat Simple_repeat 2 50 0 784 202 66 27 chr12 19475385 19475568 -124310887 - Tigger2 DNA MER2_type -1 2717 2528 207 48 48 24 chr12 19475580 19475622 -124310833 + (TA)n Simple_repeat Simple_repeat 1 43 0 1156 149 0 0 chr12 19475622 19475796 -124310659 - AluSx SINE Alu -10 300 127 42231 53 8 4 chr12 19475801 19481916 -124304539 - L1PA4 LINE L1 -13 6142 2 880 158 0 0 chr12 19481938 19482065 -124304390 - AluSx SINE Alu -185 127 1 4428 190 33 6 chr12 19482065 19482921 -124303534 - Tigger2 DNA MER2_type -174 2544 1666 400 275 40 73 chr12 19482995 19483242 -124303213 + L1ME3A LINE L1 5675 5905 -265 26 50 0 0 chr12 19483407 19483447 -124303008 + AT_rich Low_complexity Low_complexity 1 40 0 8264 224 12 8 chr12 19483552 19484990 -124301465 - L1PA15 LINE L1 0 6816 5385 210 91 0 0 chr12 19484990 19485023 -124301432 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 8264 224 12 8 chr12 19485023 19486478 -124299977 - L1PA15 LINE L1 -1431 5385 3909 5720 249 40 22 chr12 19486480 19487414 -124299041 - L1PA15 LINE L1 -2994 3803 2887 1839 158 3 16 chr12 19487414 19487730 -124298725 - AluSx SINE Alu 0 312 1 5720 249 40 22 chr12 19487730 19489272 -124297183 - L1PA15 LINE L1 -3910 2887 1286 21 36 0 0 chr12 19490613 19490641 -124295814 + AT_rich Low_complexity Low_complexity 1 28 0 3729 243 47 19 chr12 19490678 19492220 -124294235 + L1MD2 LINE L1 4518 6015 -344 2049 138 3 0 chr12 19492220 19492525 -124293930 - AluSx SINE Alu -6 306 1 3729 243 47 19 chr12 19492525 19492574 -124293881 + L1MD2 LINE L1 6015 6061 -298 330 45 0 0 chr12 19492574 19492618 -124293837 + (CA)n Simple_repeat Simple_repeat 1 44 0 3729 243 47 19 chr12 19492618 19492815 -124293640 + L1MD2 LINE L1 6061 6359 0 1374 275 135 21 chr12 19492810 19493389 -124293066 + L1MEc LINE L1 9 653 -5743 * 1601 170 3 17 chr12 19493436 19493730 -124292725 + L1PB3 LINE L1 5865 6154 0 422 190 95 26 chr12 19493744 19493860 -124292595 + L1M4 LINE L1 4076 4199 -1947 198 260 0 20 chr12 19493910 19493960 -124292495 + L3 LINE CR1 1524 1572 -5 21 57 0 0 chr12 19494300 19494335 -124292120 + AT_rich Low_complexity Low_complexity 1 35 0 932 239 21 13 chr12 19494391 19494665 -124291790 + L1MEc LINE L1 673 901 -5317 2649 272 71 22 chr12 19494691 19496064 -124290391 + L1MEc LINE L1 1034 2474 -3922 305 250 118 19 chr12 19497427 19497565 -124288890 + MIR SINE MIR 56 215 -47 631 234 1 1 chr12 19497688 19497832 -124288623 - L1MB5 LINE L1 -55 6119 5979 4645 198 14 62 chr12 19497872 19498312 -124288143 - L1MC1 LINE L1 -13 6320 5861 2079 127 0 0 chr12 19498312 19498603 -124287852 - AluSx SINE Alu -21 291 1 4645 198 14 62 chr12 19498603 19499173 -124287282 - L1MC1 LINE L1 -472 5861 5408 2215 98 0 10 chr12 19499173 19499469 -124286986 - AluSc SINE Alu -16 293 1 4645 198 14 62 chr12 19499469 19499961 -124286494 - L1MC1 LINE L1 -925 5408 4894 2316 283 53 30 chr12 19500755 19501583 -124284872 - L2 LINE L2 -545 2769 1923 721 316 20 0 chr12 19501596 19501849 -124284606 - L2 LINE L2 -1615 1699 1442 2249 61 0 67 chr12 19501870 19502198 -124284257 + AluY SINE Alu 1 306 -5 239 269 8 108 chr12 19504440 19504570 -124281885 + MIR3 SINE MIR 90 206 -2 2651 83 2 28 chr12 19505543 19505880 -124280575 - L1PA13 LINE L1 -6 6157 5830 2195 122 0 0 chr12 19505880 19506184 -124280271 - AluY SINE Alu -7 304 1 2651 83 2 28 chr12 19506184 19506241 -124280214 - L1PA13 LINE L1 -333 5830 5773 24 0 0 0 chr12 19506499 19506523 -124279932 + AT_rich Low_complexity Low_complexity 1 24 0 509 367 33 11 chr12 19508482 19508907 -124277548 - ERVL LTR ERVL -1211 4314 3833 581 311 183 35 chr12 19509910 19510390 -124276065 + MLT1H1 LTR MaLR 1 593 -2 325 283 94 29 chr12 19512711 19512849 -124273606 + L3b LINE CR1 1302 1448 -135 21 0 0 0 chr12 19513270 19513291 -124273164 + AT_rich Low_complexity Low_complexity 1 21 0 3550 162 35 56 chr12 19514997 19515799 -124270656 + LTR1 LTR ERV1 1 785 0 22 0 0 0 chr12 19515891 19515913 -124270542 + AT_rich Low_complexity Low_complexity 1 22 0 1817 132 103 27 chr12 19516179 19516549 -124269906 - LTR14B LTR ERVK 0 608 211 249 85 21 43 chr12 19516537 19516584 -124269871 - LTR14B LTR ERVK -562 46 1 * 500 92 153 20 chr12 19516587 19516685 -124269770 - HERVK14 LTR ERVK 0 5945 5835 304 212 0 17 chr12 19516685 19516760 -124269695 - MER41C LTR ERV1 -491 63 1 3254 62 33 17 chr12 19516760 19517402 -124269053 - HERVK14 LTR ERVK -186 5759 5038 305 122 0 0 chr12 19517402 19517451 -124269004 - HERV17 LTR ERV1 -8145 481 433 * 722 101 58 0 chr12 19517450 19517588 -124268867 - HERV17 LTR ERV1 -3073 5553 5408 7623 269 30 6 chr12 19517772 19520246 -124266209 - L1M4 LINE L1 -1295 4851 2317 3945 199 30 26 chr12 19520259 19522001 -124264454 - L1MA9 LINE L1 -5 7267 5436 990 254 88 54 chr12 19521989 19522926 -124263529 - L1M4 LINE L1 -3623 3942 2955 * 578 165 50 25 chr12 19522962 19523083 -124263372 + MER70B LTR ERVL 39 162 -416 2025 243 12 36 chr12 19523085 19523579 -124262876 + MER70B LTR ERVL 95 576 -2 2967 255 63 57 chr12 19523584 19525470 -124260985 - L1MA9 LINE L1 -4281 2826 926 928 212 111 9 chr12 19525488 19525714 -124260741 - L1MA9 LINE L1 -6780 250 2 631 254 14 39 chr12 19525724 19525954 -124260501 - L1MEc LINE L1 -3967 2429 2206 2516 62 3 0 chr12 19525954 19526263 -124260192 - AluY SINE Alu -1 310 1 631 254 14 39 chr12 19526263 19526315 -124260140 - L1MEc LINE L1 -4190 2206 2154 22 35 0 0 chr12 19526870 19526899 -124259556 + AT_rich Low_complexity Low_complexity 1 29 0 1519 99 0 5 chr12 19528026 19528251 -124258204 + AluSg/x SINE Alu 81 304 0 180 310 75 80 chr12 19531286 19531499 -124254956 - MIR SINE MIR -6 256 45 26 50 0 0 chr12 19532578 19532618 -124253837 + AT_rich Low_complexity Low_complexity 1 40 0 262 307 144 20 chr12 19533072 19533225 -124253230 + LTR67 LTR ERVL 29 200 -357 273 75 0 0 chr12 19533748 19533788 -124252667 + (GA)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr12 19534365 19534387 -124252068 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr12 19534619 19534656 -124251799 + AT_rich Low_complexity Low_complexity 1 37 0 253 171 237 0 chr12 19534668 19534744 -124251711 + L1ME3A LINE L1 5844 5937 -233 357 314 27 53 chr12 19534756 19534944 -124251511 + L1ME3A LINE L1 5979 6161 -9 23 54 0 0 chr12 19535637 19535674 -124250781 + AT_rich Low_complexity Low_complexity 1 37 0 297 326 43 0 chr12 19536040 19536181 -124250274 - MER103 DNA DNA -17 149 3 298 245 160 0 chr12 19536902 19536996 -124249459 + MIR SINE MIR 54 162 -100 312 287 40 67 chr12 19537119 19537269 -124249186 - L2 LINE L2 0 3313 3168 204 321 19 0 chr12 19537511 19537564 -124248891 - L2 LINE L2 -70 3202 3149 231 274 0 82 chr12 19537723 19537796 -124248659 + MIR SINE MIR 123 189 -73 433 245 42 94 chr12 19537967 19538159 -124248296 + L2 LINE L2 3130 3311 -2 1758 144 30 30 chr12 19541118 19541416 -124245039 - AluSx SINE Alu -14 298 1 379 263 102 8 chr12 19541595 19541713 -124244742 + MER94 DNA DNA 5 133 -1 262 266 0 0 chr12 19542140 19542204 -124244251 - 7SK RNA RNA -97 96 33 25 0 0 0 chr12 19543168 19543193 -124243262 + AT_rich Low_complexity Low_complexity 1 25 0 2327 264 26 46 chr12 19543564 19543845 -124242610 + L1ME1 LINE L1 5315 5600 -566 2470 59 0 0 chr12 19543845 19544150 -124242305 + AluY SINE Alu 1 305 -6 1784 142 0 43 chr12 19544156 19544459 -124241996 + AluSx SINE Alu 1 290 -22 2327 264 26 46 chr12 19544459 19545016 -124241439 + L1ME1 LINE L1 5605 6143 -23 376 288 101 0 chr12 19546000 19546166 -124240289 + MIR SINE MIR 31 215 -47 21 71 0 0 chr12 19546521 19546563 -124239892 + AT_rich Low_complexity Low_complexity 1 42 0 1177 342 61 26 chr12 19547335 19548218 -124238237 + HERV16 LTR ERVL 1981 2894 -2102 466 343 23 17 chr12 19549062 19549234 -124237221 + LTR16C LTR ERVL 130 302 -189 209 328 57 94 chr12 19549735 19549851 -124236604 - L2 LINE L2 -34 3238 3119 2434 56 3 0 chr12 19549851 19550155 -124236300 + AluY SINE Alu 1 305 -6 456 67 0 0 chr12 19550158 19550218 -124236237 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 209 328 57 94 chr12 19550218 19550499 -124235956 - L2 LINE L2 -155 3117 2852 22 0 0 0 chr12 19551261 19551283 -124235172 + AT_rich Low_complexity Low_complexity 1 22 0 526 281 60 15 chr12 19551325 19551524 -124234931 - MIR SINE MIR -47 215 8 1103 277 58 12 chr12 19551525 19551883 -124234572 + L1MC3 LINE L1 2669 3058 -3088 2340 98 0 3 chr12 19551883 19552188 -124234267 + AluSc SINE Alu 1 304 -5 1103 277 58 12 chr12 19552188 19552328 -124234127 + L1MC3 LINE L1 3058 3190 -2956 3258 259 57 14 chr12 19552328 19553566 -124232889 + L1MC3 LINE L1 4112 5397 -793 1049 197 76 0 chr12 19553567 19553732 -124232723 - AluJb SINE Alu -10 302 118 183 42 0 0 chr12 19553732 19553756 -124232699 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1049 197 76 0 chr12 19553756 19553788 -124232667 - AluJb SINE Alu -194 118 90 5594 201 81 16 chr12 19553790 19554517 -124231938 + L1MC3 LINE L1 5397 6075 -1710 1803 171 12 21 chr12 19554517 19554857 -124231598 - MER1B DNA MER1_type 0 337 1 5594 201 81 16 chr12 19554857 19555519 -124230936 + L1MC3 LINE L1 6075 6876 -909 23885 172 25 25 chr12 19555520 19561900 -124224555 + L1PA10 LINE L1 10 6469 -14 2771 225 89 39 chr12 19561905 19562215 -124224240 + L1MC3 LINE L1 6862 7155 -630 2213 81 0 37 chr12 19562215 19562537 -124223918 + AluSg SINE Alu 1 310 0 2771 225 89 39 chr12 19562537 19563089 -124223366 + L1MC3 LINE L1 7155 7767 -18 4276 237 22 17 chr12 19564691 19566711 -124219744 - L1MA9 LINE L1 -374 5938 3909 3447 210 23 25 chr12 19567057 19567942 -124218513 - L1 LINE L1 -1730 5437 4555 766 244 0 12 chr12 19567943 19568111 -124218344 + LTR28 LTR ERV1 1 166 -854 505 251 78 33 chr12 19568158 19568449 -124218006 + MER61D LTR ERV1 344 1297 -11 2490 248 59 8 chr12 19568596 19569459 -124216996 - L1 LINE L1 -2610 4557 3651 1374 224 28 41 chr12 19569449 19569854 -124216601 + L1M2c LINE L1 2217 2618 -4171 * 1913 129 39 4 chr12 19569916 19570196 -124216259 + AluSx SINE Alu 1 290 -22 380 270 25 31 chr12 19570237 19570396 -124216059 - L1 LINE L1 -3552 3615 3458 21 57 0 0 chr12 19570400 19570435 -124216020 + AT_rich Low_complexity Low_complexity 1 35 0 309 154 18 47 chr12 19570437 19570606 -124215849 + (TATAA)n Simple_repeat Simple_repeat 1 164 0 * 476 94 47 20 chr12 19570601 19570750 -124215705 + (TA)n Simple_repeat Simple_repeat 1 153 0 444 194 38 14 chr12 19570750 19571103 -124215352 + (TATAA)n Simple_repeat Simple_repeat 1 361 0 936 264 30 0 chr12 19571103 19571368 -124215087 - L1 LINE L1 -3693 3474 3202 9374 234 57 25 chr12 19571413 19574317 -124212138 - L1 LINE L1 -4161 3007 1 21 0 0 0 chr12 19574364 19574385 -124212070 + AT_rich Low_complexity Low_complexity 1 21 0 535 338 0 0 chr12 19574822 19574973 -124211482 + MIR SINE MIR 7 157 -105 388 312 34 99 chr12 19574969 19575053 -124211402 - MIR SINE MIR 0 262 174 * 300 27 0 0 chr12 19575053 19575090 -124211365 + (CA)n Simple_repeat Simple_repeat 2 38 0 388 312 34 99 chr12 19575090 19575268 -124211187 - MIR SINE MIR -88 174 17 225 375 107 26 chr12 19575372 19575719 -124210736 + L2 LINE L2 2384 2758 -556 311 370 55 0 chr12 19575841 19575987 -124210468 + MIR3 SINE MIR 49 202 -6 261 0 0 0 chr12 19576206 19576235 -124210220 + (TA)n Simple_repeat Simple_repeat 2 30 0 2008 198 57 29 chr12 19577036 19577525 -124208930 + MLT1D LTR MaLR 1 503 -2 295 241 101 0 chr12 19578067 19578146 -124208309 + L2 LINE L2 3227 3313 0 22 0 0 0 chr12 19578158 19578180 -124208275 + AT_rich Low_complexity Low_complexity 1 22 0 2047 126 3 3 chr12 19582045 19582355 -124204100 - AluSx SINE Alu -2 310 1 21 82 0 0 chr12 19582408 19582457 -124203998 + AT_rich Low_complexity Low_complexity 1 49 0 230 304 59 29 chr12 19582866 19582968 -124203487 + L2 LINE L2 3208 3312 -1 191 254 109 0 chr12 19584604 19584659 -124201796 - MIR3 SINE MIR -8 200 140 317 246 108 109 chr12 19584728 19585040 -124201415 - L2 LINE L2 -529 2785 2403 2180 82 26 10 chr12 19585040 19585346 -124201109 + AluY SINE Alu 1 311 0 317 246 108 109 chr12 19585346 19585422 -124201033 - L2 LINE L2 -911 2403 2328 1158 317 53 9 chr12 19585423 19585874 -124200581 - L2 LINE L2 -1110 2204 1734 1215 207 91 12 chr12 19585886 19586205 -124200250 - L1MC3 LINE L1 -1 7784 7441 350 271 42 0 chr12 19586192 19586288 -124200167 - L1M4 LINE L1 -2442 3704 3605 * 25 0 0 0 chr12 19586293 19586318 -124200137 + AT_rich Low_complexity Low_complexity 1 25 0 226 290 16 0 chr12 19586563 19586625 -124199830 + MLT1H LTR MaLR 1 63 -486 766 307 4 8 chr12 19586627 19586865 -124199590 - L1MCb LINE L1 -5586 321 85 275 268 41 31 chr12 19586873 19586970 -124199485 - L1MCb LINE L1 -6310 116 19 692 307 107 46 chr12 19586975 19587172 -124199283 - L2 LINE L2 -1609 1705 1521 1455 209 67 34 chr12 19587172 19587618 -124198837 + MLT1C LTR MaLR 5 465 -2 692 307 107 46 chr12 19587618 19587899 -124198556 - L2 LINE L2 -1793 1521 1198 1144 273 133 28 chr12 19588990 19589419 -124197036 - MLT1H LTR MaLR -9 540 67 5586 181 48 47 chr12 19589419 19589795 -124196660 + L1M4c LINE L1 403 777 -5607 1971 146 10 0 chr12 19589795 19590104 -124196351 - AluSx SINE Alu 0 312 1 5586 181 48 47 chr12 19590104 19591136 -124195319 + L1M4c LINE L1 777 1812 -4572 526 257 19 49 chr12 19591136 19591340 -124195115 - MLT1D LTR MaLR -84 421 199 216 0 0 0 chr12 19591835 19591859 -124194596 + (T)n Simple_repeat Simple_repeat 1 24 0 29 0 0 0 chr12 19592004 19592033 -124194422 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 19592593 19592625 -124193830 + AT_rich Low_complexity Low_complexity 1 32 0 971 271 182 64 chr12 19693209 19693943 -124092512 - L2 LINE L2 -5 3308 2488 1080 218 40 40 chr12 19693944 19694192 -124092263 - MLT1E LTR MaLR 0 593 346 536 295 77 10 chr12 19694222 19694429 -124092026 - MLT1E LTR MaLR -371 222 2 2100 185 0 8 chr12 19694619 19694987 -124091468 - MLT1A1 LTR MaLR 0 365 1 583 209 67 8 chr12 19695309 19695443 -124091012 - LTR9 LTR ERV1 0 612 471 2334 185 23 70 chr12 19695446 19696002 -124090453 - LTR9 LTR ERV1 -82 530 1 1424 220 59 93 chr12 19697606 19698209 -124088246 + MLT1E2 LTR MaLR 2 613 -41 2007 111 0 11 chr12 19698892 19699171 -124087284 - AluSx SINE Alu -36 276 1 380 340 39 31 chr12 19699218 19699400 -124087055 + MIR SINE MIR 2 181 -81 2205 88 0 7 chr12 19699400 19699712 -124086743 + AluSg SINE Alu 3 312 0 380 340 39 31 chr12 19699712 19699730 -124086725 + MIR SINE MIR 181 197 -65 225 0 0 0 chr12 19699730 19699755 -124086700 + (TA)n Simple_repeat Simple_repeat 1 25 0 380 340 39 31 chr12 19699755 19699811 -124086644 + MIR SINE MIR 197 262 0 592 323 78 9 chr12 19699896 19700113 -124086342 + MIR SINE MIR 3 234 -28 588 263 48 88 chr12 19700363 19700740 -124085715 - L1ME4a LINE L1 -295 5826 5470 1246 198 34 0 chr12 19700754 19700991 -124085464 + MLT1A1 LTR MaLR 121 365 0 1398 165 106 30 chr12 19700991 19701294 -124085161 - MLT1D LTR MaLR -179 326 1 320 267 9 19 chr12 19702793 19702898 -124083557 - MIR3 SINE MIR -1 207 104 1255 192 54 11 chr12 19703291 19703551 -124082904 - MLT1A1 LTR MaLR -94 271 1 312 290 91 5 chr12 19703771 19703957 -124082498 - L1ME3A LINE L1 -219 5951 5750 329 290 80 0 chr12 19703957 19704095 -124082360 - L1MEd LINE L1 -3987 2553 2405 352 275 86 42 chr12 19704593 19705153 -124081302 - L1MEd LINE L1 -4602 1992 1380 180 217 0 0 chr12 19705153 19705199 -124081256 + (TG)n Simple_repeat Simple_repeat 2 47 0 389 250 38 85 chr12 19705233 19705469 -124080986 - L1MEd LINE L1 -5171 1359 1135 383 243 63 9 chr12 19707188 19707299 -124079156 + MER51D LTR ERV1 464 580 -77 22 0 0 0 chr12 19707901 19707923 -124078532 + AT_rich Low_complexity Low_complexity 1 22 0 243 304 101 7 chr12 19709570 19709708 -124076747 - MER103 DNA DNA -7 159 9 27 73 0 0 chr12 19709960 19710015 -124076440 + AT_rich Low_complexity Low_complexity 1 55 0 200 338 14 0 chr12 19710318 19710389 -124076066 + MIR SINE MIR 76 147 -115 204 165 25 152 chr12 19711533 19711612 -124074843 + L2 LINE L2 3156 3224 -89 2024 146 0 0 chr12 19711805 19712106 -124074349 - AluSx SINE Alu -11 301 1 23 33 0 0 chr12 19712840 19712870 -124073585 + AT_rich Low_complexity Low_complexity 1 30 0 367 354 99 14 chr12 19713190 19713413 -124073042 - MIR SINE MIR 0 262 21 324 0 0 0 chr12 19714480 19714516 -124071939 + (CA)n Simple_repeat Simple_repeat 2 37 0 204 292 175 25 chr12 19715039 19715159 -124071296 - L2 LINE L2 -1 3271 3134 428 366 130 27 chr12 19715345 19716006 -124070449 - L2 LINE L2 -341 2973 2245 1788 180 40 19 chr12 19716007 19716379 -124070076 - MLT1B LTR MaLR 0 390 11 196 329 43 0 chr12 19716412 19716482 -124069973 - MIR SINE MIR -109 153 81 634 116 32 0 chr12 19717802 19717897 -124068558 + AluJ/FLAM SINE Alu 1 98 -214 24 0 0 0 chr12 19717940 19717964 -124068491 + GC_rich Low_complexity Low_complexity 1 24 0 359 261 25 17 chr12 19717991 19718110 -124068345 + (TATG)n Simple_repeat Simple_repeat 3 122 0 593 202 17 6 chr12 19718114 19718292 -124068163 + (TA)n Simple_repeat Simple_repeat 1 180 0 470 306 91 39 chr12 19718485 19718717 -124067738 + MIR SINE MIR 4 247 -15 199 289 33 11 chr12 19718729 19718819 -124067636 - MIR3 SINE MIR -5 203 112 2488 183 35 27 chr12 19719637 19720048 -124066407 + MER66B LTR ERV1 1 418 -68 2347 99 0 10 chr12 19720048 19720360 -124066095 - AluSc SINE Alu 0 309 1 2488 183 35 27 chr12 19720360 19720430 -124066025 + MER66B LTR ERV1 418 486 0 575 261 119 20 chr12 19722613 19722866 -124063589 + MARNA DNA Mariner 146 423 -163 293 242 0 0 chr12 19722920 19722982 -124063473 - MLT1J2 LTR MaLR -28 422 361 457 238 64 91 chr12 19723046 19723325 -124063130 - MLT1I LTR MaLR -121 288 51 225 378 134 18 chr12 19724985 19725260 -124061195 + L3b LINE CR1 1276 1582 -1 21 36 0 0 chr12 19725646 19725674 -124060781 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr12 19726222 19726261 -124060194 + (TG)n Simple_repeat Simple_repeat 2 40 0 282 322 141 17 chr12 19726892 19727069 -124059386 - MIR SINE MIR -44 218 20 1921 153 19 16 chr12 19729513 19729879 -124056576 - L1MA2 LINE L1 -155 6149 5783 202 273 0 45 chr12 19732075 19732141 -124054314 - L2 LINE L2 -28 3285 3223 237 98 0 0 chr12 19733512 19733553 -124052902 + (TG)n Simple_repeat Simple_repeat 2 42 0 203 351 59 17 chr12 19734755 19734927 -124051528 - MIR3 SINE MIR -33 229 1 21 36 0 0 chr12 19734945 19734973 -124051482 + AT_rich Low_complexity Low_complexity 1 28 0 209 348 22 39 chr12 19738840 19739021 -124047434 + MER5B DNA MER1_type 1 178 0 492 214 0 0 chr12 19739069 19739167 -124047288 + MER5A DNA MER1_type 9 106 -83 2905 156 57 31 chr12 19739224 19740010 -124046445 + pTR5 LTR ERV1 743 2021 -417 376 238 10 0 chr12 19740011 19740112 -124046343 + LTR30 LTR ERV1 541 642 -80 2175 107 3 0 chr12 19740112 19740431 -124046024 + pTR5 LTR ERV1 66 385 -2053 1789 151 20 29 chr12 19740432 19740776 -124045679 - THE1C LTR MaLR -31 344 4 600 279 35 23 chr12 19743252 19743424 -124043031 + MER91A DNA MER1_type 3 176 -20 403 270 56 0 chr12 19743426 19743515 -124042940 - MER81 DNA DNA -20 94 1 239 348 22 0 chr12 19743726 19743818 -124042637 - MIR SINE MIR -79 183 90 678 276 186 58 chr12 19745217 19746025 -124040430 - L2 LINE L2 -6 3307 2376 2199 117 3 0 chr12 19746358 19746666 -124039789 - AluSx SINE Alu -3 309 1 234 385 0 0 chr12 19746666 19746744 -124039711 - L2 LINE L2 -1 3271 3194 871 79 87 0 chr12 19747892 19748019 -124038436 + MER85 DNA T2_type 1 138 -1 21 0 0 0 chr12 19748280 19748301 -124038154 + AT_rich Low_complexity Low_complexity 1 21 0 2098 112 23 10 chr12 19748303 19748606 -124037849 - AluSx SINE Alu -3 309 3 1672 169 17 7 chr12 19749236 19749526 -124036929 - AluJb SINE Alu -19 293 1 197 65 32 0 chr12 19749948 19749979 -124036476 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 12196 186 41 23 chr12 19749997 19753634 -124032821 - L1MA7 LINE L1 -2 6493 2791 7122 188 39 11 chr12 19753624 19755229 -124031226 - L1 LINE L1 -1603 5962 4313 * 2056 254 46 60 chr12 19755232 19756413 -124030042 - L1 LINE L1 -4415 3150 2175 19047 142 36 39 chr12 19756599 19759183 -124027272 - L1P3 LINE L1 -1599 4862 2191 567 71 0 41 chr12 19759183 19759281 -124027174 + SVA Other Other 1293 1386 0 19047 142 36 39 chr12 19759281 19760204 -124026251 - L1P3 LINE L1 -4270 2191 1267 6782 159 14 29 chr12 19760222 19761463 -124024992 - L1P3 LINE L1 -4743 1132 3 2805 286 58 34 chr12 19761470 19763736 -124022719 - L1MA7 LINE L1 -4244 2107 1 329 264 174 52 chr12 19763778 19763814 -124022641 + MIR SINE MIR 83 113 -149 2286 104 3 7 chr12 19763814 19764122 -124022333 - AluSq SINE Alu -6 307 1 329 264 174 52 chr12 19764122 19764240 -124022215 + MIR SINE MIR 113 256 -6 2055 128 0 7 chr12 19764364 19764660 -124021795 + AluSq SINE Alu 1 294 -19 895 215 23 56 chr12 19764818 19765032 -124021423 - MER63A DNA MER1_type 0 210 4 479 270 13 63 chr12 19768147 19768306 -124018149 - MIR SINE MIR -49 213 63 760 330 143 30 chr12 19769257 19769846 -124016609 + L2 LINE L2 1223 1953 -1361 1969 129 161 11 chr12 19769846 19770218 -124016237 + MSTA LTR MaLR 1 428 0 760 330 143 30 chr12 19770218 19770540 -124015915 + L2 LINE L2 1953 2237 -1077 4816 206 50 16 chr12 19770552 19771963 -124014492 - L1MD1 LINE L1 -1 6635 5156 1756 241 83 25 chr12 19771958 19772439 -124014016 - L1MD1 LINE L1 -6016 524 16 * 548 338 151 21 chr12 19772439 19772862 -124013593 + L2 LINE L2 2230 2707 -607 2113 144 0 0 chr12 19773193 19773505 -124012950 - AluSx SINE Alu 0 312 1 23 33 0 0 chr12 19774642 19774672 -124011783 + AT_rich Low_complexity Low_complexity 1 30 0 2213 33 7 4 chr12 19775102 19775373 -124011082 + L1PA4 LINE L1 5881 6152 -3 722 288 35 31 chr12 19775549 19775805 -124010650 - MIR SINE MIR 0 262 6 255 204 255 20 chr12 19775839 19775937 -124010518 - MIR SINE MIR -29 233 113 189 269 39 0 chr12 19776114 19776166 -124010289 + L2 LINE L2 3219 3272 0 180 377 0 0 chr12 19777869 19777946 -124008509 - MIR SINE MIR -27 235 159 412 308 93 17 chr12 19778379 19778551 -124007904 + MIR SINE MIR 14 198 -64 341 263 0 0 chr12 19778549 19778629 -124007826 - MIR SINE MIR -16 246 167 * 207 259 17 0 chr12 19778643 19778701 -124007754 + MIR SINE MIR 203 261 -1 865 222 35 5 chr12 19778727 19778925 -124007530 - MER3 DNA MER1_type -3 206 3 6390 81 3 0 chr12 19781662 19783051 -124003404 - L1PA14 LINE L1 -4 6157 4748 330 310 83 99 chr12 19783068 19783523 -124002932 - L2 LINE L2 0 3272 2825 239 271 0 0 chr12 19784035 19784094 -124002361 + L2 LINE L2 2187 2245 -1069 383 322 92 58 chr12 19784195 19784521 -124001934 + L2 LINE L2 2626 2962 -352 283 309 31 10 chr12 19785176 19785273 -124001182 - MIR SINE MIR -108 154 56 185 216 0 0 chr12 19786269 19786306 -124000149 + L2 LINE L2 3261 3297 -16 328 285 75 11 chr12 19786682 19786819 -123999636 - MIR3 SINE MIR -5 203 60 221 0 35 0 chr12 19786901 19786930 -123999525 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 506 274 24 18 chr12 19788637 19788805 -123997650 - MIR SINE MIR 0 262 94 294 313 53 27 chr12 19795074 19795224 -123991231 + MIR3 SINE MIR 18 171 -37 252 288 96 0 chr12 19795267 19795340 -123991115 + L2 LINE L2 3194 3273 -40 216 303 61 0 chr12 19795839 19795905 -123990550 + L2 LINE L2 3200 3269 -3 232 234 0 85 chr12 19796294 19796388 -123990067 + L1M4 LINE L1 3892 3977 -2169 583 263 108 20 chr12 19796649 19796900 -123989555 + L1M4 LINE L1 3871 4143 -2003 834 307 18 26 chr12 19797108 19797489 -123988966 + L1M4 LINE L1 4490 4867 -1279 271 192 0 0 chr12 19797622 19797674 -123988781 - L2 LINE L2 -1 3312 3261 751 286 147 39 chr12 19797754 19798241 -123988214 + L2 LINE L2 2753 3282 -31 205 250 0 0 chr12 19798252 19798304 -123988151 + (TG)n Simple_repeat Simple_repeat 1 52 0 432 0 0 0 chr12 19799033 19799081 -123987374 + (TA)n Simple_repeat Simple_repeat 1 48 0 387 0 0 0 chr12 19799080 19799123 -123987332 + (GA)n Simple_repeat Simple_repeat 2 44 0 * 1911 103 53 4 chr12 19799124 19799387 -123987068 - AluSq SINE Alu -37 276 1 610 339 44 7 chr12 19799995 19800408 -123986047 + HAL1b LINE L1 211 638 -710 859 227 0 0 chr12 19800586 19800749 -123985706 + FRAM SINE Alu 1 160 -16 21 0 0 0 chr12 19801079 19801100 -123985355 + AT_rich Low_complexity Low_complexity 1 21 0 325 301 70 19 chr12 19801114 19801270 -123985185 + L1MC4a LINE L1 5895 6058 -1750 2394 56 3 3 chr12 19801385 19801688 -123984767 - AluY SINE Alu -8 303 1 21 0 0 0 chr12 19802466 19802487 -123983968 + AT_rich Low_complexity Low_complexity 1 21 0 217 254 14 0 chr12 19803162 19803233 -123983222 + (TA)n Simple_repeat Simple_repeat 1 72 0 381 271 21 0 chr12 19804670 19804766 -123981689 + Charlie2 DNA MER1_type 228 325 -2457 916 261 95 35 chr12 19804767 19805192 -123981263 + Charlie2 DNA MER1_type 1855 2320 -542 218 81 27 0 chr12 19805192 19805229 -123981226 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 916 261 95 35 chr12 19805229 19805339 -123981116 + Charlie2 DNA MER1_type 2320 2422 -440 1637 186 7 11 chr12 19806376 19806655 -123979800 + AluJo SINE Alu 5 282 -30 191 304 128 20 chr12 19806691 19806793 -123979662 - L2 LINE L2 -1 3312 3200 182 325 39 0 chr12 19806882 19806959 -123979496 - L2 LINE L2 -225 3047 2968 1940 207 99 18 chr12 19807030 19807484 -123978971 - MLT1D LTR MaLR -13 492 2 1609 176 92 46 chr12 19807603 19807641 -123978814 - MLT2D LTR ERVL -4 410 375 345 24 0 0 chr12 19807641 19807683 -123978772 + (TG)n Simple_repeat Simple_repeat 1 42 0 1609 176 92 46 chr12 19807683 19808036 -123978419 - MLT2D LTR ERVL -39 375 1 615 266 113 81 chr12 19808248 19808688 -123977767 + MLT1G LTR MaLR 10 503 -46 229 307 0 85 chr12 19808697 19808715 -123977740 - L1MC/D LINE L1 -512 5832 5815 967 281 100 5 chr12 19808715 19809332 -123977123 - L1ME3A LINE L1 -343 5810 5106 254 108 0 0 chr12 19809417 19809454 -123977001 + MER54A LTR ERVL 102 138 -763 2140 108 7 3 chr12 19809471 19809766 -123976689 - AluSq SINE Alu -17 296 1 2193 234 18 0 chr12 19809785 19810226 -123976229 + MER54A LTR ERVL 453 901 0 1144 284 99 20 chr12 19810361 19811318 -123975137 - L1MEd LINE L1 -3193 2936 1937 301 225 34 28 chr12 19811537 19811715 -123974740 + (TA)n Simple_repeat Simple_repeat 2 180 0 648 304 36 18 chr12 19811780 19812381 -123974074 - L1MEd LINE L1 -4862 1257 700 562 272 27 22 chr12 19814468 19814652 -123971803 + MER5A DNA MER1_type 2 186 -3 317 336 27 20 chr12 19814859 19815005 -123971450 - L2 LINE L2 -183 3089 2943 205 147 0 0 chr12 19817194 19817228 -123969227 - L2 LINE L2 -2 3311 3278 236 316 64 59 chr12 19817245 19817432 -123969023 + MER5A DNA MER1_type 1 188 -1 31 26 0 0 chr12 19818295 19818333 -123968122 + AT_rich Low_complexity Low_complexity 1 38 0 204 143 0 0 chr12 19818782 19818824 -123967631 + (TC)n Simple_repeat Simple_repeat 1 42 0 2427 79 0 0 chr12 19819110 19819402 -123967053 + AluSc SINE Alu 2 293 -16 1555 276 76 11 chr12 19820813 19821353 -123965102 - L2 LINE L2 -865 2449 1875 17916 208 54 20 chr12 19821362 19823276 -123963179 + L1PA14 LINE L1 6 1855 -5744 2099 93 43 20 chr12 19823276 19823577 -123962878 - AluY SINE Alu -3 308 1 17916 208 54 20 chr12 19823577 19827001 -123959454 + L1PA14 LINE L1 1855 6167 -1432 291 28 0 0 chr12 19827001 19827037 -123959418 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 17916 208 54 20 chr12 19827037 19828399 -123958056 + L1PA14 LINE L1 6167 7482 -117 261 102 85 68 chr12 19828397 19828456 -123957999 + L1PA15 LINE L1 6104 6163 -2 * 23 54 0 0 chr12 19828495 19828532 -123957923 + AT_rich Low_complexity Low_complexity 1 37 0 455 246 152 11 chr12 19828539 19828730 -123957725 - L2 LINE L2 -1428 1886 1669 468 354 13 18 chr12 19828737 19828963 -123957492 - L2 LINE L2 -2708 606 382 280 309 32 16 chr12 19829435 19829561 -123956894 - MER20B DNA MER1_type -613 170 43 344 182 68 0 chr12 19829575 19829663 -123956792 - MER53 DNA DNA 0 189 96 341 211 53 0 chr12 19829728 19829804 -123956651 + MER91C DNA MER1_type 61 140 0 402 343 108 66 chr12 19830865 19832138 -123954317 - L2 LINE L2 -456 2858 1533 1666 176 14 100 chr12 19832138 19832559 -123953896 - MLT1B LTR MaLR -5 385 1 191 297 192 11 chr12 19832613 19832795 -123953660 - L2 LINE L2 -1855 1459 1245 1529 250 77 52 chr12 19833194 19833389 -123953066 + L1MDa LINE L1 1564 1753 -4968 2077 116 3 49 chr12 19833389 19833716 -123952739 + AluSp SINE Alu 1 312 -1 1529 250 77 52 chr12 19833716 19834410 -123952045 + L1MDa LINE L1 1753 2512 -4209 1181 73 0 11 chr12 19834528 19834707 -123951748 + (TTTCC)n Simple_repeat Simple_repeat 2 178 0 2077 119 3 0 chr12 19834723 19835017 -123951438 - AluSp SINE Alu -17 296 2 2933 169 94 13 chr12 19835026 19835835 -123950620 + MER41-int LTR ERV1 528 1489 -4457 1687 84 5 0 chr12 19835937 19836152 -123950303 - AluSp SINE Alu -97 216 1 1302 213 115 25 chr12 19836165 19836522 -123949933 + MLT1D LTR MaLR 117 505 0 531 234 101 43 chr12 19836564 19836773 -123949682 + L1MEc LINE L1 4 224 -6172 608 199 144 30 chr12 19837169 19837370 -123949085 + MER2 DNA MER2_type 122 345 0 1970 257 36 16 chr12 19837426 19838112 -123948343 - L1M4 LINE L1 -2211 3935 3236 784 240 14 5 chr12 19838162 19838379 -123948076 - L1M4 LINE L1 -3318 2828 2610 486 233 29 0 chr12 19838605 19838708 -123947747 + MER5A DNA MER1_type 84 189 0 468 221 39 94 chr12 19839177 19839358 -123947097 + L1ME LINE L1 5512 5682 -439 3380 49 11 16 chr12 19839845 19840296 -123946159 + L1PA8 LINE L1 5724 6172 0 269 292 108 15 chr12 19840300 19840430 -123946025 - L2 LINE L2 -389 2925 2784 830 289 62 62 chr12 19840551 19841063 -123945392 - L2 LINE L2 -556 2758 2247 2271 79 3 10 chr12 19841164 19841468 -123944987 - MLT2A1 LTR ERVL -142 302 1 180 200 0 0 chr12 19841817 19841862 -123944593 + (CAT)n Simple_repeat Simple_repeat 2 46 0 981 238 111 49 chr12 19841862 19842206 -123944249 + MLT1A1 LTR MaLR 1 365 0 335 319 72 0 chr12 19842222 19842360 -123944095 - MIR SINE MIR -40 222 75 309 352 38 19 chr12 19842406 19842565 -123943890 - MIR3 SINE MIR -24 184 23 925 230 0 0 chr12 19844494 19844672 -123941783 + MER45A DNA AcHobo 1 178 0 403 278 154 12 chr12 19844750 19844919 -123941536 + L2 LINE L2 3119 3311 -2 21 0 0 0 chr12 19845309 19845330 -123941125 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 19846241 19846270 -123940185 + AT_rich Low_complexity Low_complexity 1 29 0 10874 25 1 0 chr12 19846431 19848478 -123937977 + L1PA3 LINE L1 4099 6147 -8 227 29 57 0 chr12 19848496 19848531 -123937924 + (TAAAAA)n Simple_repeat Simple_repeat 4 40 0 518 325 94 32 chr12 19848924 19849551 -123936904 + L1 LINE L1 2676 3412 -2734 515 256 82 54 chr12 19849663 19850120 -123936335 + L1 LINE L1 3520 3983 -2163 * 1885 119 3 22 chr12 19850111 19850423 -123936032 + L1MA5A LINE L1 5813 6118 -179 492 167 0 0 chr12 19850427 19850511 -123935944 - L1P LINE L1 -1561 4585 4502 * 592 164 79 29 chr12 19850510 19850650 -123935805 + L1 LINE L1 4598 4744 -1402 2198 223 86 12 chr12 19850655 19851327 -123935128 + L1PBa LINE L1 321 1042 -5821 8453 181 31 2 chr12 19851335 19854442 -123932013 + L1PBa LINE L1 1094 4440 -2422 21 0 0 0 chr12 19854448 19854469 -123931986 + AT_rich Low_complexity Low_complexity 1 21 0 503 281 152 23 chr12 19854648 19854865 -123931590 + MIR SINE MIR 5 249 -13 23 33 0 0 chr12 19855694 19855724 -123930731 + AT_rich Low_complexity Low_complexity 1 30 0 7468 25 2 10 chr12 19856133 19857542 -123928913 + L1PA4 LINE L1 4750 6152 -3 321 301 219 15 chr12 19857828 19858024 -123928431 - MIR SINE MIR -17 245 10 782 322 23 29 chr12 19859648 19859996 -123926459 + MARNA DNA Mariner 60 405 -181 2744 279 52 23 chr12 19860180 19861211 -123925244 + L2 LINE L2 2068 3119 -194 283 275 0 25 chr12 19861223 19861303 -123925152 + L2 LINE L2 3236 3313 0 281 291 55 36 chr12 19862349 19862459 -123923996 - MER5A DNA MER1_type -15 174 63 336 309 69 29 chr12 19863494 19863698 -123922757 + L2 LINE L2 2169 2380 -934 180 0 0 0 chr12 19863779 19863799 -123922656 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 2285 141 3 5 chr12 19863800 19864154 -123922301 - L1PB1 LINE L1 -5 6146 5792 393 22 0 0 chr12 19864154 19864200 -123922255 + (TG)n Simple_repeat Simple_repeat 2 47 0 2285 141 3 5 chr12 19864200 19864215 -123922240 - L1PB1 LINE L1 -359 5792 5778 1216 104 38 0 chr12 19864269 19864452 -123922003 - L1PB1 LINE L1 -361 5790 5601 21 0 0 0 chr12 19865731 19865752 -123920703 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr12 19866805 19866842 -123919613 + AT_rich Low_complexity Low_complexity 1 37 0 1231 271 136 44 chr12 19867021 19868224 -123918231 + L1ME LINE L1 239 1528 -4552 1776 272 58 14 chr12 19868251 19868565 -123917890 - L1M4 LINE L1 -3057 3089 2790 2178 67 60 0 chr12 19868565 19868847 -123917608 - AluY SINE Alu -12 299 1 1776 272 58 14 chr12 19868847 19869317 -123917138 - L1M4 LINE L1 -3356 2790 2233 468 111 0 0 chr12 19869324 19869396 -123917059 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 405 319 69 81 chr12 19869439 19869759 -123916696 - L3 LINE CR1 -638 939 624 235 217 65 0 chr12 19870342 19870434 -123916021 + (TA)n Simple_repeat Simple_repeat 1 98 0 14864 223 33 16 chr12 19870752 19876358 -123910097 - L1MA7 LINE L1 -11 7699 2023 382 173 37 25 chr12 19876358 19876439 -123910016 - L1MA7 LINE L1 -5873 1613 1532 597 214 43 0 chr12 19877639 19877756 -123908699 + FLAM_A SINE Alu 2 123 -10 25 31 0 0 chr12 19877763 19877795 -123908660 + AT_rich Low_complexity Low_complexity 1 32 0 185 309 73 0 chr12 19878821 19878876 -123907579 - L2 LINE L2 0 3313 3255 1682 167 73 3 chr12 19878952 19879240 -123907215 + AluSx SINE Alu 1 308 -4 284 313 18 9 chr12 19880069 19880181 -123906274 + Tigger1 DNA MER2_type 1040 1152 -1266 239 307 121 18 chr12 19880616 19880782 -123905673 - L2 LINE L2 -911 2403 2221 985 212 13 44 chr12 19880782 19881008 -123905447 + MER20 DNA MER1_type 1 219 0 447 212 126 13 chr12 19881093 19881244 -123905211 - MIR SINE MIR 0 262 95 258 94 94 62 chr12 19881244 19881308 -123905147 - MLT2B1 LTR ERVL 0 520 455 1645 200 105 64 chr12 19881349 19881805 -123904650 - MLT2B1 LTR ERVL -44 476 2 27054 165 49 48 chr12 19881806 19885049 -123901406 - ERVL-B1 LTR ERVL -7 5757 2506 2048 91 11 4 chr12 19885049 19885350 -123901105 - AluSp SINE Alu 0 307 5 27054 165 49 48 chr12 19885350 19887471 -123898984 - ERVL-B1 LTR ERVL -3258 2506 388 496 170 0 0 chr12 19887476 19887570 -123898885 - MLT2B2 LTR ERVL -421 94 1 225 383 21 0 chr12 19887570 19887664 -123898791 - MIR SINE MIR -163 99 4 189 0 0 0 chr12 19887777 19887798 -123898657 + (A)n Simple_repeat Simple_repeat 1 21 0 24 53 0 0 chr12 19887975 19888013 -123898442 + AT_rich Low_complexity Low_complexity 1 38 0 43 56 0 0 chr12 19888764 19888835 -123897620 + AT_rich Low_complexity Low_complexity 1 71 0 2043 131 3 10 chr12 19890569 19890874 -123895581 - AluSq SINE Alu -10 303 1 1105 248 3 10 chr12 19890955 19891254 -123895201 - L1M4 LINE L1 -1014 5132 4836 390 21 0 0 chr12 19891612 19891659 -123894796 + (TG)n Simple_repeat Simple_repeat 2 48 0 188 224 41 61 chr12 19893407 19893456 -123892999 + L2 LINE L2 3214 3261 -11 201 275 159 43 chr12 19893468 19893606 -123892849 - MIR SINE MIR -108 154 1 401 252 79 0 chr12 19894477 19894604 -123891851 - MIR SINE MIR -13 249 113 291 385 82 0 chr12 19894748 19894930 -123891525 - L2 LINE L2 -1899 1415 1219 379 238 167 33 chr12 19895760 19895970 -123890485 + L1ME4a LINE L1 5879 6116 -5 953 196 28 14 chr12 19896084 19896298 -123890157 + L1PA16 LINE L1 5950 6166 0 264 200 0 0 chr12 19896348 19896403 -123890052 - L1MA2 LINE L1 0 6304 6250 27 29 0 0 chr12 19897107 19897141 -123889314 + AT_rich Low_complexity Low_complexity 1 34 0 3563 239 42 157 chr12 19897865 19899122 -123887333 + L2 LINE L2 1200 2600 -713 279 0 0 0 chr12 19899122 19899153 -123887302 + (TC)n Simple_repeat Simple_repeat 2 32 0 3563 239 42 157 chr12 19899153 19899170 -123887285 + L2 LINE L2 2600 2617 -696 213 65 0 0 chr12 19899170 19899201 -123887254 + (TG)n Simple_repeat Simple_repeat 2 32 0 3563 239 42 157 chr12 19899201 19899471 -123886984 + L2 LINE L2 2617 2916 -397 441 0 0 0 chr12 19899471 19899520 -123886935 + (TG)n Simple_repeat Simple_repeat 2 50 0 3563 239 42 157 chr12 19899520 19900284 -123886171 + L2 LINE L2 2916 3240 -73 238 333 0 0 chr12 19900294 19900351 -123886104 + Zaphod DNA AcHobo 11 67 -3964 1218 320 75 33 chr12 19900376 19900848 -123885607 + MER115 DNA AcHobo 144 641 -52 2017 189 26 75 chr12 19900848 19901339 -123885116 + MLT1C LTR MaLR 1 467 0 1218 320 75 33 chr12 19901339 19901384 -123885071 + MER115 DNA AcHobo 641 683 -10 204 40 0 0 chr12 19901700 19901725 -123884730 + (GA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr12 19902556 19902584 -123883871 + AT_rich Low_complexity Low_complexity 1 28 0 3762 175 50 25 chr12 19904049 19904832 -123881623 + L1MC3 LINE L1 6884 7685 -100 5239 235 51 37 chr12 19904841 19904909 -123881546 + L1M4 LINE L1 2 68 -6578 1588 168 3 54 chr12 19904909 19905057 -123881398 + AluJo SINE Alu 2 156 -161 2066 110 34 0 chr12 19905057 19905349 -123881106 + AluSg1 SINE Alu 1 302 -7 1588 168 3 54 chr12 19905349 19905531 -123880924 + AluJo SINE Alu 156 317 0 5239 235 51 37 chr12 19905531 19907363 -123879092 + L1M4 LINE L1 68 1919 -4727 22 56 0 0 chr12 19907363 19907399 -123879056 + AT_rich Low_complexity Low_complexity 1 36 0 392 313 33 0 chr12 19907969 19908119 -123878336 - MIR SINE MIR -38 224 70 903 264 81 3 chr12 19908133 19908428 -123878027 - L1MC4 LINE L1 -141 7901 7584 1026 63 0 14 chr12 19908431 19908573 -123877882 - L1PA4 LINE L1 0 6155 6016 600 263 35 6 chr12 19908573 19908744 -123877711 + L1M4 LINE L1 1907 2082 -4564 7281 178 83 14 chr12 19908745 19910294 -123876161 + L1MB3 LINE L1 4 1658 -4726 4119 111 57 71 chr12 19910292 19911082 -123875373 + L1PA15 LINE L1 5374 6152 -13 * 2776 156 152 29 chr12 19911120 19911830 -123874625 + L1PA15-16 LINE L1 1645 2426 -3958 1450 212 17 3 chr12 19911818 19912120 -123874335 + L1MB3 LINE L1 4205 4510 -1872 * 1281 180 14 0 chr12 19912128 19912345 -123874110 - MER2 DNA MER2_type -124 221 2 3751 180 13 31 chr12 19912349 19913371 -123873084 + L1MB3 LINE L1 5216 6219 -200 4780 35 0 0 chr12 19913371 19913935 -123872520 + L1PA3 LINE L1 5591 6154 -1 23 0 0 0 chr12 19913935 19913958 -123872497 + AT_rich Low_complexity Low_complexity 1 23 0 1049 174 14 14 chr12 19913964 19914182 -123872273 + L1MB3 LINE L1 6202 6419 0 23 54 0 0 chr12 19914239 19914276 -123872179 + AT_rich Low_complexity Low_complexity 1 37 0 1085 103 0 81 chr12 19914276 19914422 -123872033 + AluSp SINE Alu 1 132 -181 2126 106 3 7 chr12 19914422 19914715 -123871740 + AluSc SINE Alu 3 294 -15 1085 103 0 81 chr12 19914715 19914742 -123871713 + AluSp SINE Alu 132 160 -153 1951 232 77 7 chr12 19914743 19915576 -123870879 + L1M4c LINE L1 2080 2976 -3406 411 208 40 0 chr12 19915577 19915678 -123870777 + L1MC3 LINE L1 7679 7783 -2 275 347 148 14 chr12 19916395 19916611 -123869844 - MIR SINE MIR -10 252 8 553 235 81 81 chr12 19917797 19918057 -123868398 - MIR SINE MIR 0 262 3 219 267 156 22 chr12 19918089 19918179 -123868276 - MIR SINE MIR -25 237 136 1653 152 49 85 chr12 19918220 19918429 -123868026 - MLT1A2 LTR MaLR 0 374 184 2134 95 3 43 chr12 19918429 19918733 -123867722 - AluSg SINE Alu -18 292 1 1653 152 49 85 chr12 19918733 19918911 -123867544 - MLT1A2 LTR MaLR -190 184 1 195 129 0 0 chr12 19919047 19919078 -123867377 + (CA)n Simple_repeat Simple_repeat 2 32 0 256 216 114 34 chr12 19919144 19919232 -123867223 - MIR3 SINE MIR -23 185 91 403 286 53 41 chr12 19919249 19919420 -123867035 + MIR SINE MIR 79 251 -11 213 121 0 0 chr12 19919423 19919456 -123866999 + (TTA)n Simple_repeat Simple_repeat 3 35 0 1949 123 13 38 chr12 19919666 19919982 -123866473 + AluSg SINE Alu 1 308 -2 534 258 108 0 chr12 19920276 19920443 -123866012 - MER3 DNA MER1_type -8 201 17 1747 194 34 8 chr12 19920517 19920873 -123865582 - MLT1A1 LTR MaLR 0 365 1 561 284 63 29 chr12 19921452 19921691 -123864764 - LTR33 LTR ERVL -274 247 1 1628 230 148 27 chr12 19922330 19922857 -123863598 - MLT1E LTR MaLR -2 591 1 346 294 96 11 chr12 19923084 19923261 -123863194 + L2 LINE L2 3122 3313 0 508 288 69 42 chr12 19923392 19923772 -123862683 + MLT1H1 LTR MaLR 1 364 -178 613 245 0 20 chr12 19923785 19923936 -123862519 + MER3 DNA MER1_type 30 130 -79 3335 173 25 9 chr12 19924132 19924785 -123861670 + L1PB4 LINE L1 5490 6152 -4 392 343 30 34 chr12 19924884 19925117 -123861338 + MLT1K LTR MaLR 345 576 -12 681 251 30 6 chr12 19926170 19926337 -123860118 - MER5A DNA MER1_type 0 189 19 557 265 26 20 chr12 19926363 19926514 -123859941 + MER5B DNA MER1_type 27 178 0 245 254 16 0 chr12 19926651 19926714 -123859741 + (TG)n Simple_repeat Simple_repeat 1 64 0 2816 230 82 20 chr12 19927115 19928273 -123858182 - L1ME1 LINE L1 -5 6161 4934 2534 214 54 9 chr12 19929436 19929992 -123856463 - MER90 LTR ERV1 -11 603 23 233 365 0 0 chr12 19930018 19930092 -123856363 - L2 LINE L2 -194 3078 3005 21 0 0 0 chr12 19930423 19930444 -123856011 + AT_rich Low_complexity Low_complexity 1 21 0 630 221 147 30 chr12 19933200 19933431 -123853024 - MIR SINE MIR 0 262 5 1737 154 81 31 chr12 19933516 19933873 -123852582 + THE1C LTR MaLR 1 375 0 333 68 0 0 chr12 19934596 19934640 -123851815 + (CA)n Simple_repeat Simple_repeat 1 44 0 210 233 17 33 chr12 19935583 19935643 -123850812 + L2 LINE L2 3214 3272 0 27 62 0 0 chr12 19936440 19936488 -123849967 + AT_rich Low_complexity Low_complexity 1 48 0 185 174 0 22 chr12 19937716 19937762 -123848693 + GA-rich Low_complexity Low_complexity 3 47 0 1557 70 74 5 chr12 19938108 19938323 -123848132 - MER30 DNA MER1_type 0 230 1 227 331 113 73 chr12 19938892 19938970 -123847485 - L2 LINE L2 0 3272 3199 1965 141 0 3 chr12 19938970 19939290 -123847165 - AluSq SINE Alu 0 319 1 227 331 113 73 chr12 19939290 19939361 -123847094 - L2 LINE L2 -73 3199 3116 405 361 65 31 chr12 19939737 19940092 -123846363 - L2 LINE L2 -616 2698 2332 237 330 33 22 chr12 19943361 19943543 -123842912 + HAL1b LINE L1 407 590 -758 266 0 0 29 chr12 19945088 19945123 -123841332 + (TA)n Simple_repeat Simple_repeat 1 34 0 318 261 94 39 chr12 19945797 19945977 -123840478 - L3 LINE CR1 -277 1300 1111 265 308 125 8 chr12 19946174 19946294 -123840161 + MIR3 SINE MIR 74 207 -1 250 239 14 14 chr12 19946890 19946961 -123839494 + MER112 DNA MER1_type 9 79 -181 720 103 0 0 chr12 19947010 19947117 -123839338 + (CTATT)n Simple_repeat Simple_repeat 4 110 0 1724 113 49 0 chr12 19947408 19947692 -123838763 - L1MA3 LINE L1 -1 6304 6007 477 286 138 61 chr12 19949196 19949573 -123836882 + MLT1K LTR MaLR 162 567 -21 2165 120 0 7 chr12 19949752 19950052 -123836403 - AluSx SINE Alu -14 298 1 363 315 87 7 chr12 19950226 19950375 -123836080 + L2 LINE L2 3152 3312 -1 26 0 0 0 chr12 19950931 19950957 -123835498 + AT_rich Low_complexity Low_complexity 1 26 0 313 237 52 74 chr12 19951307 19951442 -123835013 + L1M1 LINE L1 15 146 -7419 423 0 0 0 chr12 19951714 19951761 -123834694 + (TCC)n Simple_repeat Simple_repeat 2 48 0 240 341 87 24 chr12 19952771 19952897 -123833558 + MER5A DNA MER1_type 37 170 -19 1212 68 0 0 chr12 19952926 19953072 -123833383 - AluSg/x SINE Alu -10 302 157 408 315 119 31 chr12 19953130 19953473 -123832982 - Tigger8 DNA MER2_type -35 631 258 367 218 0 13 chr12 19953473 19953551 -123832904 + LTR24B LTR ERV1 1 77 -499 544 315 47 36 chr12 19953613 19953972 -123832483 + LTR24B LTR ERV1 207 569 -7 364 330 98 40 chr12 19954124 19954435 -123832020 - L2 LINE L2 -1211 2103 1757 1986 124 0 13 chr12 19954435 19954734 -123831721 - AluSq SINE Alu -18 295 1 364 330 98 40 chr12 19954734 19954870 -123831585 - L2 LINE L2 -1557 1757 1630 21 0 0 0 chr12 19955067 19955088 -123831367 + AT_rich Low_complexity Low_complexity 1 21 0 2079 129 0 0 chr12 19955691 19955978 -123830477 + AluSx SINE Alu 1 287 -25 313 252 93 66 chr12 19955993 19956055 -123830400 + L1MC4a LINE L1 5766 5825 -1983 2236 99 3 19 chr12 19956055 19956367 -123830088 + AluSx SINE Alu 4 310 -2 313 252 93 66 chr12 19956367 19956455 -123830000 + L1MC4a LINE L1 5825 5920 -1888 1666 234 80 28 chr12 19956902 19957367 -123829088 - MLT1D LTR MaLR -12 493 5 5546 192 21 35 chr12 19957991 19959708 -123826747 - L1MA9 LINE L1 -38 6274 4600 532 281 0 0 chr12 19959708 19959836 -123826619 + FLAM_C SINE Alu 2 129 -4 5546 192 21 35 chr12 19959836 19960292 -123826163 - L1MA9 LINE L1 -1712 4600 4139 2046 279 100 19 chr12 19960393 19960840 -123825615 - L2 LINE L2 -301 3012 2495 6641 36 0 0 chr12 19960840 19961668 -123824787 + L1PA4 LINE L1 5341 6168 0 2046 279 100 19 chr12 19961668 19961961 -123824494 - L2 LINE L2 -818 2495 2227 21 57 0 0 chr12 19962071 19962106 -123824349 + AT_rich Low_complexity Low_complexity 1 35 0 247 222 0 0 chr12 19962804 19962849 -123823606 + MER112 DNA MER1_type 203 247 -13 1029 179 42 24 chr12 19964781 19964993 -123821462 + MER20 DNA MER1_type 4 219 0 318 50 0 0 chr12 19965292 19965332 -123821123 + (GA)n Simple_repeat Simple_repeat 1 40 0 1767 60 5 0 chr12 19965507 19965725 -123820730 - AluY SINE Alu -10 301 83 428 246 37 52 chr12 19965735 19965907 -123820548 - FLAM_A SINE Alu 0 171 2 188 307 40 0 chr12 19967006 19967081 -123819374 - MIR SINE MIR -104 158 81 21 104 0 0 chr12 19967291 19967368 -123819087 + AT_rich Low_complexity Low_complexity 1 77 0 1095 314 103 35 chr12 19967536 19967907 -123818548 + L2 LINE L2 2155 2499 -815 1917 172 52 75 chr12 19967907 19968332 -123818123 + MER47B DNA MER2_type 4 418 0 1095 314 103 35 chr12 19968332 19968708 -123817747 + L2 LINE L2 2499 2953 -361 24 53 0 0 chr12 19969499 19969537 -123816918 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 19969741 19969762 -123816693 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 19969943 19969966 -123816489 + AT_rich Low_complexity Low_complexity 1 23 0 1925 251 39 20 chr12 19969984 19970559 -123815896 - L1ME3A LINE L1 -23 6147 5564 368 221 229 16 chr12 19970586 19970708 -123815747 + MIR SINE MIR 21 168 -94 429 281 165 0 chr12 19970807 19971049 -123815406 + L1ME4a LINE L1 5616 5897 -224 197 254 73 0 chr12 19971720 19971775 -123814680 + MER5C DNA MER1_type 31 89 -235 403 311 145 31 chr12 19971954 19972505 -123813950 + L2 LINE L2 2701 3309 -4 229 295 67 0 chr12 19972822 19972927 -123813528 + Tigger8 DNA MER2_type 379 490 -176 229 259 0 0 chr12 19975489 19975543 -123810912 - MIR SINE MIR -132 130 77 244 319 94 51 chr12 19975897 19976035 -123810420 + L2 LINE L2 2946 3089 -183 187 286 89 0 chr12 19976119 19976175 -123810280 + L2 LINE L2 3212 3272 -41 228 313 134 9 chr12 19976538 19976650 -123809805 + L2 LINE L2 3186 3311 -2 1532 194 7 14 chr12 19977171 19977455 -123809000 + AluJo SINE Alu 1 282 -30 27 29 0 0 chr12 19977455 19977489 -123808966 + AT_rich Low_complexity Low_complexity 1 34 0 302 358 102 47 chr12 19977666 19978281 -123808174 - L2 LINE L2 -406 2908 2260 205 330 156 27 chr12 19978281 19978505 -123807950 + MIR SINE MIR 1 253 -9 569 305 37 5 chr12 19980076 19980266 -123806189 - MIR SINE MIR -11 251 56 29 0 0 0 chr12 19980657 19980686 -123805769 + AT_rich Low_complexity Low_complexity 1 29 0 1637 252 51 43 chr12 19981250 19981758 -123804697 + LTR40a LTR ERVL 1 512 -7 9364 191 38 30 chr12 19982100 19982280 -123804175 - L1MA10 LINE L1 -1 6333 6156 1630 173 4 4 chr12 19982280 19982557 -123803898 - AluJb SINE Alu -33 279 3 9364 191 38 30 chr12 19982557 19984444 -123802011 - L1MA10 LINE L1 -178 6156 4287 264 30 0 0 chr12 19984444 19984477 -123801978 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2090 108 0 0 chr12 19984481 19984758 -123801697 - AluSx SINE Alu -35 277 1 9364 191 38 30 chr12 19984758 19985532 -123800923 - L1MA10 LINE L1 -2049 4285 3454 660 217 0 0 chr12 19985532 19985647 -123800808 - FLAM_C SINE Alu -18 115 1 9364 191 38 30 chr12 19985647 19986006 -123800449 - L1MA10 LINE L1 -2880 3454 3100 34 84 0 0 chr12 19986534 19986617 -123799838 + AT_rich Low_complexity Low_complexity 1 83 0 202 333 101 14 chr12 19986796 19986934 -123799521 + MIR SINE MIR 100 249 -13 357 62 0 0 chr12 19989576 19989624 -123796831 + (TG)n Simple_repeat Simple_repeat 1 48 0 252 0 0 0 chr12 19989623 19989651 -123796804 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 191 289 184 9 chr12 19989993 19990107 -123796348 - MIR SINE MIR -10 252 119 1792 210 22 0 chr12 19990140 19990497 -123795958 - MLT1A1 LTR MaLR 0 365 1 434 217 126 42 chr12 19990967 19991110 -123795345 - MER5A DNA MER1_type -28 161 7 777 276 68 19 chr12 19991613 19991983 -123794472 - L1ME4a LINE L1 -216 5905 5518 333 103 26 39 chr12 19992201 19992279 -123794176 + CT-rich Low_complexity Low_complexity 1 77 0 260 210 12 0 chr12 19992278 19992359 -123794096 + (CA)n Simple_repeat Simple_repeat 1 82 0 * 216 298 184 35 chr12 19992410 19992524 -123793931 + L2 LINE L2 3183 3313 0 195 355 154 5 chr12 19993494 19993714 -123792741 + L2 LINE L2 1317 1569 -1745 1314 169 13 17 chr12 19993758 19994030 -123792425 - AluJb SINE Alu 0 324 54 372 283 9 9 chr12 19994041 19994147 -123792308 - MIR SINE MIR -155 107 2 1683 169 34 9 chr12 19994422 19994771 -123791684 - L1MA10 LINE L1 -1 6333 5976 3924 111 31 5 chr12 19994988 19995593 -123790862 + L1PA15 LINE L1 5543 6163 -2 2266 109 0 0 chr12 19996048 19996360 -123790095 - AluSx SINE Alu 0 312 1 796 160 0 0 chr12 19996478 19996609 -123789846 - FLAM_C SINE Alu -2 131 1 350 306 21 49 chr12 19996699 19996843 -123789612 + MIR SINE MIR 7 146 -116 210 338 15 0 chr12 19996903 19996971 -123789484 + L2 LINE L2 3204 3272 0 327 276 230 11 chr12 19997306 19997480 -123788975 - LTR33 LTR ERVL -6 515 304 506 280 85 20 chr12 19997556 19997756 -123788699 - LTR33 LTR ERVL -306 215 3 532 282 107 32 chr12 19999369 19999586 -123786869 + L1ME LINE L1 5268 5467 -703 303 28 0 0 chr12 19999586 19999622 -123786833 + (TG)n Simple_repeat Simple_repeat 2 37 0 532 282 107 32 chr12 19999622 19999805 -123786650 + L1ME LINE L1 5467 5707 -463 200 313 7 33 chr12 20000099 20000249 -123786206 + A-rich Low_complexity Low_complexity 3 148 0 300 370 82 27 chr12 20002493 20002712 -123783743 - L2 LINE L2 0 3272 3042 405 304 0 9 chr12 20002825 20002940 -123783515 + LTR16A LTR ERVL 212 325 -125 741 163 98 49 chr12 20002948 20003132 -123783323 - MER58C DNA MER1_type -1 214 22 355 300 10 0 chr12 20003153 20003253 -123783202 + LTR16A LTR ERVL 338 438 -12 560 195 102 68 chr12 20003315 20003592 -123782863 + MER92B LTR ERV1 10 355 -199 416 91 91 0 chr12 20003592 20003656 -123782799 + MER41B LTR ERV1 1 70 -565 498 244 96 67 chr12 20003656 20003791 -123782664 - LTR28 LTR ERV1 0 1020 688 1489 225 67 114 chr12 20003856 20004638 -123781817 - LTR1B LTR ERV1 -81 745 1 3967 90 32 12 chr12 20004638 20005196 -123781259 + MER41B LTR ERV1 67 635 0 485 216 28 128 chr12 20005205 20005423 -123781032 + MER92C LTR ERV1 357 552 -2 3201 218 155 28 chr12 20005806 20007222 -123779233 - Charlie2a DNA MER1_type -38 2824 1228 867 236 73 9 chr12 20007265 20007592 -123778863 - Charlie2a DNA MER1_type -1767 1095 748 8068 146 47 1 chr12 20007636 20007770 -123778685 + Tigger1 DNA MER2_type 85 211 -2207 1922 122 7 46 chr12 20007770 20008074 -123778381 - AluSx SINE Alu -19 293 2 8068 146 47 1 chr12 20008074 20009280 -123777175 + Tigger1 DNA MER2_type 211 1487 -931 956 152 0 0 chr12 20009280 20009425 -123777030 - AluJb SINE Alu -167 145 1 34 0 0 0 chr12 20009616 20009650 -123776805 + AT_rich Low_complexity Low_complexity 1 34 0 2050 165 31 0 chr12 20009668 20010020 -123776435 - MER47A DNA MER2_type -1 365 3 22 70 0 0 chr12 20010078 20010121 -123776334 + AT_rich Low_complexity Low_complexity 1 43 0 30417 110 25 56 chr12 20010771 20017117 -123769338 + L1PA7 LINE L1 12 6151 -3 312 291 102 16 chr12 20017975 20018102 -123768353 - MIR3 SINE MIR -41 167 30 310 327 78 14 chr12 20018156 20018373 -123768082 - L3 LINE CR1 -346 1231 1001 237 65 0 0 chr12 20018999 20019030 -123767425 + (A)n Simple_repeat Simple_repeat 1 31 0 320 286 34 41 chr12 20019506 20019653 -123766802 - L1M4 LINE L1 -1445 4701 4556 461 283 146 31 chr12 20019659 20019885 -123766570 - MIR SINE MIR -8 254 3 382 281 208 22 chr12 20020370 20020683 -123765772 - L1M4 LINE L1 -2149 3997 3627 445 326 78 20 chr12 20020831 20021076 -123765379 - LTR33 LTR ERVL -157 364 106 1959 188 9 28 chr12 20021750 20022078 -123764377 - L1 LINE L1 -1128 5018 4698 191 88 29 0 chr12 20022078 20022112 -123764343 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1959 188 9 28 chr12 20022112 20022219 -123764236 - L1 LINE L1 -1448 4698 4591 2599 153 23 14 chr12 20022221 20023260 -123763195 + L1PA15 LINE L1 5030 6162 -3 24 32 0 0 chr12 20023412 20023443 -123763012 + AT_rich Low_complexity Low_complexity 1 31 0 760 304 45 13 chr12 20023588 20023969 -123762486 - L1ME3A LINE L1 -225 5945 5553 366 326 93 19 chr12 20024002 20024272 -123762183 - L1ME3A LINE L1 -3380 2766 2477 945 282 36 4 chr12 20024782 20025030 -123761425 - MIR SINE MIR 0 262 7 32 91 0 0 chr12 20025055 20025143 -123761312 + AT_rich Low_complexity Low_complexity 1 88 0 687 308 96 27 chr12 20025158 20025450 -123761005 + L2 LINE L2 3001 3312 -1 26 0 0 0 chr12 20026005 20026031 -123760424 + AT_rich Low_complexity Low_complexity 1 26 0 374 88 18 0 chr12 20026317 20026374 -123760081 - MLT1D LTR MaLR -1 504 447 7236 183 17 14 chr12 20026381 20027679 -123758776 + L1M1 LINE L1 15 1316 -6249 * 9502 115 12 68 chr12 20027676 20029394 -123757061 + L1PA8A LINE L1 2525 4146 -2000 2102 83 16 0 chr12 20029392 20029705 -123756750 - L1M1 LINE L1 -4822 2743 2426 * 7742 122 7 5 chr12 20029705 20031664 -123754791 + L1PA8A LINE L1 4169 6129 -2 7875 137 13 9 chr12 20031676 20032799 -123753656 + L1M1 LINE L1 2419 3554 -4011 3264 91 5 223 chr12 20032799 20033648 -123752807 + MER4A LTR ERV1 1 664 0 7875 137 13 9 chr12 20033648 20034208 -123752247 + L1M1 LINE L1 3554 4110 -3455 371 61 0 0 chr12 20034311 20034360 -123752095 + MER4B LTR ERV1 562 610 0 4477 207 13 103 chr12 20034362 20035028 -123751427 + L1M1 LINE L1 3544 4268 -3297 480 99 0 0 chr12 20035028 20035099 -123751356 + (TG)n Simple_repeat Simple_repeat 2 72 0 842 139 0 0 chr12 20035099 20035221 -123751234 - AluJb SINE Alu -190 122 1 4477 207 13 103 chr12 20035221 20035965 -123750490 + L1M1 LINE L1 4266 4938 -2627 44510 38 0 1 chr12 20035967 20042127 -123744328 + L1PA3 LINE L1 1 6152 -3 4500 170 23 0 chr12 20042117 20042941 -123743514 + L1M1 LINE L1 4891 5733 -1832 * 1375 161 99 0 chr12 20042942 20043185 -123743270 - MLT1D LTR MaLR -199 306 40 338 316 95 6 chr12 20043519 20043687 -123742768 + L1M4 LINE L1 2847 3029 -3117 213 65 0 0 chr12 20044389 20044420 -123742035 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 316 144 11 58 chr12 20044429 20044617 -123741838 + (TA)n Simple_repeat Simple_repeat 2 180 0 35 63 0 0 chr12 20044648 20044711 -123741744 + AT_rich Low_complexity Low_complexity 1 63 0 23 78 0 0 chr12 20044803 20044854 -123741601 + AT_rich Low_complexity Low_complexity 1 51 0 566 307 48 84 chr12 20044907 20045464 -123740991 + L1M4 LINE L1 3803 4339 -1807 548 302 63 10 chr12 20045707 20045912 -123740543 - MIR SINE MIR -10 252 37 224 206 32 0 chr12 20046498 20046561 -123739894 + A-rich Low_complexity Low_complexity 2 66 0 22 80 0 0 chr12 20046674 20046724 -123739731 + AT_rich Low_complexity Low_complexity 1 50 0 26 74 0 0 chr12 20046814 20046868 -123739587 + AT_rich Low_complexity Low_complexity 1 54 0 189 0 0 0 chr12 20046875 20046896 -123739559 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr12 20046970 20046992 -123739463 + AT_rich Low_complexity Low_complexity 1 22 0 369 287 8 16 chr12 20047265 20047394 -123739061 - MLT1H1 LTR MaLR 0 555 428 737 315 17 8 chr12 20047410 20047645 -123738810 - MLT1H1 LTR MaLR -254 301 65 647 316 59 19 chr12 20047722 20048029 -123738426 + LTR16B LTR ERVL 129 447 -17 237 198 40 40 chr12 20048034 20048135 -123738320 + (CTATA)n Simple_repeat Simple_repeat 3 103 0 249 178 44 0 chr12 20048146 20048191 -123738264 - MLT1H1 LTR MaLR -532 58 12 1268 123 5 0 chr12 20048674 20048861 -123737594 + MLT1C LTR MaLR 1 188 -279 1574 181 4 0 chr12 20048971 20049237 -123737218 + MLT1C LTR MaLR 199 465 -2 1459 264 40 11 chr12 20050556 20051082 -123735373 - L1M4 LINE L1 -1588 4558 4018 821 275 69 59 chr12 20051091 20051398 -123735057 + L2 LINE L2 2681 3001 -312 2474 58 0 16 chr12 20051398 20051706 -123734749 - AluY SINE Alu -8 303 1 821 275 69 59 chr12 20051706 20051938 -123734517 + L2 LINE L2 3001 3229 -84 243 0 0 0 chr12 20051994 20052021 -123734434 + (TA)n Simple_repeat Simple_repeat 1 27 0 821 160 0 0 chr12 20052310 20052429 -123734026 - FLAM_C SINE Alu -24 119 1 1781 162 0 7 chr12 20052547 20052831 -123733624 - AluJo SINE Alu -30 282 1 1991 160 0 0 chr12 20053638 20053938 -123732517 + AluJb SINE Alu 1 300 -12 23 0 0 0 chr12 20054429 20054452 -123732003 + AT_rich Low_complexity Low_complexity 1 23 0 875 238 60 34 chr12 20056689 20056987 -123729468 + MER46C DNA MER2_type 18 323 -15 258 304 51 0 chr12 20057043 20057122 -123729333 + MIR SINE MIR 67 149 -113 311 293 95 34 chr12 20057943 20058090 -123728365 - MIR3 SINE MIR -12 196 41 25 31 0 0 chr12 20058469 20058501 -123727954 + AT_rich Low_complexity Low_complexity 1 32 0 2373 66 3 16 chr12 20060093 20060397 -123726058 - AluY SINE Alu -11 300 1 2265 103 3 0 chr12 20060429 20060729 -123725726 + AluSp SINE Alu 1 301 -12 815 253 134 40 chr12 20061560 20062001 -123724454 - MLT1H LTR MaLR 0 542 55 278 183 14 14 chr12 20062011 20062082 -123724373 - MLT1G LTR MaLR -9 581 511 855 360 81 29 chr12 20063465 20064454 -123722001 + ERVL LTR ERVL 4287 5326 -438 958 299 17 23 chr12 20064665 20065019 -123721436 + LTR16A LTR ERVL 7 358 -92 287 278 0 74 chr12 20065142 20065250 -123721205 - MIR SINE MIR -78 184 85 204 226 0 0 chr12 20065533 20065586 -123720869 + A-rich Low_complexity Low_complexity 1 53 0 201 369 0 0 chr12 20065758 20065823 -123720632 + GA-rich Low_complexity Low_complexity 4 68 0 24 0 0 0 chr12 20066610 20066634 -123719821 + AT_rich Low_complexity Low_complexity 1 24 0 1637 184 32 0 chr12 20068568 20068846 -123717609 + AluJb SINE Alu 2 288 -24 321 291 118 24 chr12 20069097 20069224 -123717231 - MER5A DNA MER1_type 0 189 51 387 0 0 0 chr12 20069292 20069335 -123717120 + (CA)n Simple_repeat Simple_repeat 2 44 0 241 337 0 22 chr12 20069853 20069942 -123716513 + MIR SINE MIR 20 106 -102 240 198 198 12 chr12 20070136 20070217 -123716238 + MIR SINE MIR 101 196 -66 408 88 0 0 chr12 20071437 20071494 -123714961 + (CA)n Simple_repeat Simple_repeat 2 58 0 315 238 60 0 chr12 20072380 20072464 -123713991 + MIR SINE MIR 66 154 -108 16309 139 19 37 chr12 20072469 20073866 -123712589 - Tigger4(Zombi) DNA MER2_type -5 2726 1305 651 195 9 0 chr12 20073866 20073979 -123712476 - FLAM_C SINE Alu -19 114 1 16309 139 19 37 chr12 20073979 20074829 -123711626 - Tigger4(Zombi) DNA MER2_type -1426 1305 537 2128 103 7 13 chr12 20074829 20075129 -123711326 + AluSx SINE Alu 1 298 -14 16309 139 19 37 chr12 20075129 20075655 -123710800 - Tigger4(Zombi) DNA MER2_type -2194 537 3 588 204 0 9 chr12 20075702 20075815 -123710640 + FLAM_A SINE Alu 16 127 -15 950 194 75 5 chr12 20076098 20076299 -123710156 - MER20 DNA MER1_type 0 219 5 241 227 193 23 chr12 20076515 20076603 -123709852 + MIR SINE MIR 51 153 -109 4413 197 49 28 chr12 20076743 20078065 -123708390 - L1MA10 LINE L1 -1 6333 4974 4191 137 20 9 chr12 20078074 20078758 -123707697 - Tigger3b DNA MER2_type -526 705 14 1194 240 71 4 chr12 20078797 20079304 -123707151 - L1ME LINE L1 -501 5661 5121 701 280 139 51 chr12 20079314 20079725 -123706730 + L2 LINE L2 2867 3313 0 347 324 40 4 chr12 20079850 20080075 -123706380 - L1MEd LINE L1 -4991 1128 896 210 314 0 0 chr12 20080871 20080922 -123705533 - L2 LINE L2 -6 3266 3216 25 31 0 0 chr12 20081842 20081874 -123704581 + AT_rich Low_complexity Low_complexity 1 32 0 325 300 134 42 chr12 20082421 20082704 -123703751 - L2 LINE L2 0 3313 3005 10134 146 7 10 chr12 20082988 20084682 -123701773 + L1PA11 LINE L1 3337 5025 -1121 955 148 0 0 chr12 20084683 20084845 -123701610 - L1P LINE L1 -1392 4754 4593 6530 88 7 2 chr12 20084845 20085973 -123700482 + L1PA11 LINE L1 5033 6165 -9 27 29 0 0 chr12 20085973 20086007 -123700448 + AT_rich Low_complexity Low_complexity 1 34 0 243 125 0 0 chr12 20086640 20086680 -123699775 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 21 0 0 0 chr12 20087670 20087691 -123698764 + AT_rich Low_complexity Low_complexity 1 21 0 235 273 26 0 chr12 20088320 20088397 -123698058 + MER116 DNA Mariner 2 80 0 1502 198 40 69 chr12 20088574 20089055 -123697400 - LTR37B LTR ERV1 -1 467 1 2137 112 0 13 chr12 20089124 20089436 -123697019 + AluSx SINE Alu 1 308 -4 14797 192 60 9 chr12 20089975 20090285 -123696170 - L1PB1 LINE L1 -8 6859 6566 486 0 0 0 chr12 20090285 20090339 -123696116 + (TA)n Simple_repeat Simple_repeat 1 54 0 414 0 0 0 chr12 20090338 20090384 -123696071 + (GA)n Simple_repeat Simple_repeat 2 47 0 * 14797 192 60 9 chr12 20090339 20091743 -123694712 - L1PB1 LINE L1 -301 6566 5235 189 0 0 0 chr12 20091743 20091764 -123694691 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 14797 192 60 9 chr12 20091764 20095000 -123691455 - L1PB1 LINE L1 -1632 5235 1485 2292 113 0 0 chr12 20095000 20095311 -123691144 + AluSq SINE Alu 1 311 -2 14797 192 60 9 chr12 20095311 20096860 -123689595 - L1PB1 LINE L1 -5382 1485 17 25 0 0 0 chr12 20096884 20096909 -123689546 + AT_rich Low_complexity Low_complexity 1 25 0 1745 169 42 6 chr12 20097061 20097392 -123689063 + MER2 DNA MER2_type 1 343 -1 1335 279 82 60 chr12 20097533 20098131 -123688324 + L3 LINE CR1 320 930 -647 433 296 25 38 chr12 20098140 20098299 -123688156 + MIR SINE MIR 1 157 -105 610 294 69 9 chr12 20098486 20098719 -123687736 - MIR SINE MIR -5 257 11 210 338 60 20 chr12 20099977 20100128 -123686327 + L2 LINE L2 1865 2021 -1293 265 338 12 0 chr12 20100204 20100284 -123686171 - L2 LINE L2 -10 3303 3223 692 240 31 31 chr12 20100336 20100528 -123685927 + MIR SINE MIR 60 251 -11 250 266 16 16 chr12 20100909 20100973 -123685482 - L2 LINE L2 -4 3309 3246 2205 128 0 0 chr12 20101079 20101444 -123685011 + AluSx SINE Alu 1 365 0 200 273 0 0 chr12 20101480 20101524 -123684931 + L2 LINE L2 3217 3260 -12 2168 236 16 7 chr12 20101918 20102436 -123684019 + L1ME1 LINE L1 5655 6333 -1 223 378 27 14 chr12 20102630 20102778 -123683677 - L2 LINE L2 -993 2321 2172 637 203 105 14 chr12 20102962 20103130 -123683325 + MER39 LTR ERV1 7 144 -509 * 921 232 34 34 chr12 20103125 20103362 -123683093 + MER39 LTR ERV1 306 542 -165 543 197 45 38 chr12 20103364 20103496 -123682959 + FLAM_A SINE Alu 1 133 0 825 149 17 72 chr12 20103525 20103706 -123682749 + MER39 LTR ERV1 537 707 0 342 0 0 0 chr12 20103899 20103937 -123682518 + (A)n Simple_repeat Simple_repeat 1 38 0 299 241 45 98 chr12 20104312 20104424 -123682031 + MER5A DNA MER1_type 63 168 -21 431 299 105 40 chr12 20104444 20104892 -123681563 + L2 LINE L2 1791 2267 -1047 427 287 62 80 chr12 20105209 20105484 -123680971 - MLT1H LTR MaLR -198 351 82 21 0 0 0 chr12 20105697 20105718 -123680737 + AT_rich Low_complexity Low_complexity 1 21 0 5608 160 23 51 chr12 20106052 20107159 -123679296 + L1MA9 LINE L1 4217 5298 -1014 903 150 0 0 chr12 20107159 20107292 -123679163 + FLAM_C SINE Alu 1 133 0 5608 160 23 51 chr12 20107292 20107704 -123678751 + L1MA9 LINE L1 5298 5720 -592 1419 159 68 50 chr12 20107704 20107864 -123678591 + L1MA9 LINE L1 5986 6142 -170 327 49 0 0 chr12 20107864 20107905 -123678550 + (CA)n Simple_repeat Simple_repeat 2 42 0 1419 159 68 50 chr12 20107905 20108065 -123678390 + L1MA9 LINE L1 6142 6312 0 2916 266 131 19 chr12 20108079 20109361 -123677094 + L2 LINE L2 1835 3270 -43 778 230 49 11 chr12 20109369 20109764 -123676691 + MER34 LTR ERV1 41 540 -2 180 0 0 0 chr12 20111055 20111075 -123675380 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 453 165 153 0 chr12 20111304 20111389 -123675066 + FLAM_A SINE Alu 9 106 -36 449 0 0 35 chr12 20111412 20111470 -123674985 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 939 285 86 29 chr12 20112210 20113278 -123673177 - L1ME LINE L1 -648 5514 4378 624 245 10 139 chr12 20113310 20113604 -123672851 + MIR SINE MIR 1 256 -6 781 269 22 16 chr12 20113609 20113791 -123672664 - MLT1I LTR MaLR -2 407 225 809 251 49 0 chr12 20113866 20114049 -123672406 - MLT1I LTR MaLR -200 209 18 35 24 0 0 chr12 20114076 20114118 -123672337 + AT_rich Low_complexity Low_complexity 1 42 0 188 345 24 24 chr12 20114226 20114310 -123672145 - MIR SINE MIR -167 95 12 270 252 17 101 chr12 20114418 20114537 -123671918 - L1ME LINE L1 -1934 4212 4104 445 246 104 30 chr12 20114559 20115001 -123671454 - L1ME LINE L1 -694 5472 4985 207 0 0 0 chr12 20115324 20115347 -123671108 + (A)n Simple_repeat Simple_repeat 1 23 0 376 258 70 31 chr12 20115725 20115853 -123670602 + MIR SINE MIR 124 256 -6 332 292 35 26 chr12 20117860 20117973 -123668482 + MIR SINE MIR 20 133 -129 368 291 99 28 chr12 20118452 20118593 -123667862 + MIR SINE MIR 56 206 -56 313 87 43 0 chr12 20118602 20118672 -123667783 - Alu SINE Alu 0 309 238 2072 138 3 0 chr12 20120804 20121101 -123665354 + AluSx SINE Alu 1 298 -14 503 48 36 12 chr12 20121734 20121818 -123664637 + (TA)n Simple_repeat Simple_repeat 2 87 0 490 245 27 34 chr12 20121919 20122066 -123664389 - L2 LINE L2 -12 3301 3156 2247 110 0 0 chr12 20122369 20122678 -123663777 + AluSg1 SINE Alu 1 309 0 317 239 120 48 chr12 20122729 20122938 -123663517 + L1MEd LINE L1 991 1214 -4905 319 142 87 16 chr12 20122938 20123065 -123663390 + (TA)n Simple_repeat Simple_repeat 2 137 0 321 71 55 98 chr12 20123067 20123250 -123663205 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 234 116 23 0 chr12 20124585 20124628 -123661827 + MADE1 DNA Mariner 37 80 0 397 272 99 49 chr12 20125035 20125239 -123661216 + MIR SINE MIR 9 237 -25 2147 143 102 2 chr12 20126743 20127136 -123659319 - MSTB1 LTR MaLR 0 432 1 21 71 0 0 chr12 20127179 20127221 -123659234 + AT_rich Low_complexity Low_complexity 1 42 0 2213 117 0 10 chr12 20128310 20128619 -123657836 - MER1B DNA MER1_type -2 337 32 2121 119 13 7 chr12 20128675 20128977 -123657478 + AluSg SINE Alu 1 304 -6 317 309 151 22 chr12 20129045 20129184 -123657271 + L2 LINE L2 3116 3272 0 1658 148 9 62 chr12 20129866 20130191 -123656264 - MLT1B LTR MaLR -4 386 79 354 111 0 0 chr12 20130194 20130248 -123656207 + U2 snRNA snRNA 4 57 -131 * 534 115 19 77 chr12 20130243 20130347 -123656108 - MLT1B LTR MaLR -292 98 1 1690 185 6 23 chr12 20131596 20131938 -123654517 - MLT1A1 LTR MaLR -27 401 5 351 0 0 0 chr12 20132375 20132414 -123654041 + (CA)n Simple_repeat Simple_repeat 2 40 0 1201 274 110 68 chr12 20133555 20134118 -123652337 + MLT2E LTR ERVL 34 620 -8 30 45 0 0 chr12 20134198 20134242 -123652213 + AT_rich Low_complexity Low_complexity 1 44 0 32 0 0 0 chr12 20134699 20134731 -123651724 + AT_rich Low_complexity Low_complexity 1 32 0 2230 318 73 28 chr12 20134750 20135927 -123650528 + ERVL LTR ERVL 802 2031 -3733 407 169 78 0 chr12 20135935 20136012 -123650443 + MSTC LTR MaLR 1 83 -345 2404 125 11 16 chr12 20137494 20137871 -123648584 + THE1C LTR MaLR 1 375 0 267 31 0 0 chr12 20137936 20137968 -123648487 + (TG)n Simple_repeat Simple_repeat 2 33 0 180 378 16 24 chr12 20138416 20138543 -123647912 - L2 LINE L2 -9 3304 3179 264 30 0 0 chr12 20138664 20138697 -123647758 + (TG)n Simple_repeat Simple_repeat 2 34 0 866 244 92 58 chr12 20139482 20139830 -123646625 + MLT1A1 LTR MaLR 6 365 0 39 50 0 0 chr12 20140804 20140864 -123645591 + AT_rich Low_complexity Low_complexity 1 60 0 25676 137 15 15 chr12 20141016 20143617 -123642838 - L1PA8A LINE L1 -1 6445 3844 198 0 0 0 chr12 20143617 20143639 -123642816 + (TGG)n Simple_repeat Simple_repeat 1 22 0 25676 137 15 15 chr12 20143639 20147428 -123639027 - L1PA8A LINE L1 -2602 3844 4 259 170 38 28 chr12 20147894 20148000 -123638455 + (TA)n Simple_repeat Simple_repeat 2 108 0 187 306 56 28 chr12 20149331 20149439 -123637016 - L3 LINE CR1 -12 1565 1455 226 250 42 159 chr12 20149950 20150300 -123636155 + L2 LINE L2 2739 3053 -219 1771 149 29 32 chr12 20150443 20150752 -123635703 + AluJb SINE Alu 1 308 -4 650 264 82 72 chr12 20151267 20151672 -123634783 - MLT1I LTR MaLR 0 409 1 1860 174 0 13 chr12 20152089 20152399 -123634056 + AluJb SINE Alu 5 310 -2 713 239 28 0 chr12 20153048 20153190 -123633265 + FRAM SINE Alu 1 146 -30 930 182 42 118 chr12 20153488 20153871 -123632584 - MLT1A1 LTR MaLR 0 365 1 286 204 11 68 chr12 20154759 20154847 -123631608 + L2 LINE L2 3190 3272 0 509 323 95 26 chr12 20155531 20155763 -123630692 - MIR SINE MIR -14 248 1 632 298 198 32 chr12 20156245 20156775 -123629680 + L3 LINE CR1 636 1253 -324 184 327 83 60 chr12 20156919 20157087 -123629368 - L2 LINE L2 -53 3219 3048 2505 125 31 76 chr12 20157126 20157615 -123628840 - MLT1C LTR MaLR 0 467 1 371 322 88 64 chr12 20158163 20158617 -123627838 - L2 LINE L2 -342 2972 2508 215 353 8 16 chr12 20158644 20158766 -123627689 - MER5A DNA MER1_type -1 188 68 261 350 119 14 chr12 20158851 20158994 -123627461 + L3 LINE CR1 1352 1509 -68 305 284 200 19 chr12 20159519 20159674 -123626781 + MIR SINE MIR 2 184 -78 1333 217 81 21 chr12 20160167 20160549 -123625906 - MLT1C LTR MaLR -4 463 59 205 218 109 0 chr12 20160834 20160889 -123625566 + MIR SINE MIR 200 260 -2 3286 152 75 0 chr12 20160889 20161449 -123625006 - MER7C DNA MER2_type 0 602 1 670 138 17 0 chr12 20161727 20161843 -123624612 - L1M2 LINE L1 -492 5808 5691 340 325 0 0 chr12 20162029 20162143 -123624312 - L1M3b LINE L1 -5552 729 616 233 259 25 12 chr12 20162115 20162196 -123624259 - L1M3b LINE L1 -5520 761 680 * 6107 174 37 13 chr12 20162194 20164378 -123622077 + L1MA7 LINE L1 3988 6291 0 235 343 0 14 chr12 20164918 20164988 -123621467 - MIR3 SINE MIR -126 82 14 227 149 0 21 chr12 20165099 20165146 -123621309 + (TTTCC)n Simple_repeat Simple_repeat 1 46 0 484 252 116 7 chr12 20165274 20165429 -123621026 - MIR SINE MIR -70 192 21 2132 146 0 0 chr12 20165531 20165840 -123620615 - AluSx SINE Alu -3 309 1 181 169 169 84 chr12 20166195 20166266 -123620189 + L3 LINE CR1 708 784 -793 328 304 62 27 chr12 20166442 20166554 -123619901 + L2 LINE L2 3155 3270 -2 2457 196 22 0 chr12 20168371 20168816 -123617639 + MLT2B1 LTR ERVL 1 455 -65 6457 89 14 1 chr12 20168830 20170060 -123616395 + L1PA11 LINE L1 4925 6166 -8 29 78 0 0 chr12 20170060 20170124 -123616331 + AT_rich Low_complexity Low_complexity 1 64 0 578 206 14 7 chr12 20170226 20170367 -123616088 + MER104 DNA Tc2 37 178 -2 1605 180 42 52 chr12 20170496 20170897 -123615558 + MLT2C1 LTR ERVL 1 397 0 551 285 102 68 chr12 20171014 20171385 -123615070 - L1MC4a LINE L1 -1736 6072 5715 447 19 0 0 chr12 20171385 20171437 -123615018 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 551 285 102 68 chr12 20171437 20171857 -123614598 - L1MC4a LINE L1 -2093 5715 5254 506 253 99 70 chr12 20172057 20172330 -123614125 - L1MC4a LINE L1 -1194 4952 4672 281 337 49 43 chr12 20172458 20172621 -123613834 + MIR3 SINE MIR 37 200 -8 269 196 181 38 chr12 20174541 20174674 -123611781 - MIR SINE MIR -80 182 31 2836 142 33 16 chr12 20175041 20175390 -123611065 - L1PB4 LINE L1 0 6156 5794 309 51 0 0 chr12 20175390 20175429 -123611026 + (TA)n Simple_repeat Simple_repeat 1 39 0 2836 142 33 16 chr12 20175429 20175593 -123610862 - L1PB4 LINE L1 -362 5794 5634 1913 120 7 3 chr12 20176259 20176559 -123609896 - L1MA3 LINE L1 -7 6298 5998 762 187 0 0 chr12 20177407 20177546 -123608909 - FLAM_C SINE Alu -4 139 1 650 296 42 35 chr12 20177863 20178123 -123608332 + LTR16C LTR ERVL 101 362 -129 410 269 128 58 chr12 20178486 20178917 -123607538 + HERV16 LTR ERVL 343 803 -4193 362 356 17 0 chr12 20179418 20179592 -123606863 + HERV16 LTR ERVL 1454 1630 -4024 518 309 0 0 chr12 20179592 20179741 -123606714 + HERV16 LTR ERVL 1736 1884 -3112 1980 326 74 40 chr12 20179901 20180677 -123605778 + HERV16 LTR ERVL 2124 2969 -2795 2430 107 11 8 chr12 20180677 20181031 -123605424 - THE1A LTR MaLR 0 355 1 1980 326 74 40 chr12 20181031 20181648 -123604807 + HERV16 LTR ERVL 2969 3564 -2200 2249 85 7 7 chr12 20182107 20182412 -123604043 + AluSc SINE Alu 1 305 -4 227 267 50 0 chr12 20182473 20182574 -123603881 + L1ME4a LINE L1 5982 6087 -34 288 167 111 0 chr12 20183515 20183587 -123602868 + MER116 DNA Mariner 1 80 0 1100 315 163 41 chr12 20184259 20185160 -123601295 + L2 LINE L2 1953 3080 -233 2240 67 49 0 chr12 20185160 20185444 -123601011 + AluY SINE Alu 3 300 -11 1100 315 163 41 chr12 20185444 20185691 -123600764 + L2 LINE L2 3080 3295 -18 258 288 0 25 chr12 20185992 20186072 -123600383 + HAL1 LINE L1 1 78 -2429 243 61 0 0 chr12 20187067 20187100 -123599355 + (TC)n Simple_repeat Simple_repeat 2 34 0 223 349 106 15 chr12 20188457 20188589 -123597866 + L2 LINE L2 2926 3069 -203 198 386 0 0 chr12 20188733 20188803 -123597652 + L2 LINE L2 3238 3307 -6 278 274 106 26 chr12 20189319 20189432 -123597023 + MIR SINE MIR 68 189 -73 245 170 18 125 chr12 20189740 20189852 -123596603 - L1ME4a LINE L1 -53 6068 5969 635 139 104 26 chr12 20190435 20190550 -123595905 - FLAM_C SINE Alu -9 124 1 324 0 0 0 chr12 20191307 20191343 -123595112 + (TG)n Simple_repeat Simple_repeat 2 37 0 687 316 64 37 chr12 20191762 20192218 -123594237 + L1MEd LINE L1 680 1147 -4972 2049 112 7 0 chr12 20192295 20192573 -123593882 + AluSx SINE Alu 1 280 -32 265 74 19 19 chr12 20192579 20192633 -123593822 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 491 48 0 0 chr12 20192774 20192836 -123593619 + AluY SINE Alu 1 62 -251 1270 137 11 0 chr12 20192836 20193046 -123593409 + AluSg/x SINE Alu 97 308 0 381 252 42 42 chr12 20193508 20193627 -123592828 - MIR SINE MIR -70 192 74 189 345 46 11 chr12 20194990 20195077 -123591378 - MIR SINE MIR -6 256 167 5914 60 0 0 chr12 20195308 20196044 -123590411 - L1PA8 LINE L1 -2 6170 5435 1883 154 0 29 chr12 20196070 20196376 -123590079 - AluSx SINE Alu -15 297 1 309 350 117 12 chr12 20196460 20196623 -123589832 - HAL1 LINE L1 -697 1810 1631 623 318 90 38 chr12 20196624 20197045 -123589410 - HAL1 LINE L1 -904 1603 1161 332 283 131 2 chr12 20198464 20198656 -123587799 + L1ME3 LINE L1 5924 6154 -8 1076 203 25 0 chr12 20198815 20199052 -123587403 + MER63 DNA MER1_type 811 1053 -7 503 207 124 33 chr12 20199330 20199451 -123587004 + FLAM_C SINE Alu 2 133 0 3918 120 28 0 chr12 20199484 20200099 -123586356 + L1PB3 LINE L1 5523 6154 0 35 54 0 0 chr12 20200644 20200700 -123585755 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr12 20201136 20201165 -123585290 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr12 20202881 20202907 -123583548 + AT_rich Low_complexity Low_complexity 1 26 0 531 316 86 6 chr12 20204752 20204926 -123581529 + MIR SINE MIR 52 239 -23 397 329 99 61 chr12 20204946 20205290 -123581165 + L3 LINE CR1 1220 1576 -1 298 313 121 0 chr12 20205580 20205679 -123580776 - L2 LINE L2 -4 3309 3199 377 309 10 27 chr12 20206808 20206970 -123579485 + MER5A DNA MER1_type 20 175 -3 1522 155 70 8 chr12 20207579 20207837 -123578618 + AluSx SINE Alu 1 274 -38 317 274 0 0 chr12 20207926 20207999 -123578456 + MLT1J LTR MaLR 112 184 -327 21291 149 32 22 chr12 20208463 20209233 -123577222 - L1MA3 LINE L1 0 7724 6963 2059 116 16 26 chr12 20209233 20209544 -123576911 + AluSx SINE Alu 1 308 -4 21291 149 32 22 chr12 20209544 20216409 -123570046 - L1MA3 LINE L1 -761 6963 11 680 174 79 17 chr12 20217325 20217503 -123568952 + MER53 DNA DNA 1 189 0 281 311 57 16 chr12 20219107 20219229 -123567226 - MIR3 SINE MIR -73 135 9 2293 180 14 5 chr12 20219547 20219970 -123566485 + MLT2B1 LTR ERVL 3 429 -91 231 88 0 0 chr12 20220138 20220172 -123566283 + (T)n Simple_repeat Simple_repeat 1 34 0 412 290 13 62 chr12 20221939 20222136 -123564319 + MER5A DNA MER1_type 1 189 0 243 315 11 11 chr12 20222443 20222532 -123563923 + MIR SINE MIR 47 135 -127 192 77 0 0 chr12 20223893 20223919 -123562536 + (CAA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr12 20224966 20224994 -123561461 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 20225043 20225063 -123561392 + (A)n Simple_repeat Simple_repeat 1 20 0 2222 99 0 7 chr12 20225279 20225573 -123560882 + AluSg SINE Alu 2 293 -17 329 259 30 30 chr12 20225578 20225713 -123560742 - L1MC4 LINE L1 -1339 6983 1949 406 323 96 12 chr12 20226151 20226318 -123560137 + MER5A DNA MER1_type 7 187 -2 2361 174 83 10 chr12 20226556 20227038 -123559417 - LTR40a LTR ERVL -2 517 1 2155 241 133 46 chr12 20227121 20227886 -123558569 + L2 LINE L2 2039 2736 -577 2243 196 38 18 chr12 20227886 20228381 -123558074 - MLT1D LTR MaLR 0 505 1 2155 241 133 46 chr12 20228381 20228532 -123557923 + L2 LINE L2 2736 2872 -441 2033 108 40 77 chr12 20228532 20228606 -123557849 - THE1B LTR MaLR 0 364 289 2080 77 44 4 chr12 20228606 20228911 -123557544 + AluY SINE Alu 1 316 0 2033 108 40 77 chr12 20228911 20229213 -123557242 - THE1B LTR MaLR -75 289 1 2155 241 133 46 chr12 20229213 20229457 -123556998 + L2 LINE L2 2872 3309 -4 269 191 90 45 chr12 20230195 20230284 -123556171 + MER34 LTR ERV1 438 530 -12 4139 122 11 9 chr12 20230366 20231000 -123555455 - MER41B LTR ERV1 0 635 1 3318 125 82 16 chr12 20231477 20232051 -123554404 - LTR9 LTR ERV1 0 612 1 180 221 0 59 chr12 20232702 20232770 -123553685 + L2 LINE L2 3024 3087 -226 856 197 13 40 chr12 20232810 20233038 -123553417 - MER34 LTR ERV1 0 542 321 2077 143 36 51 chr12 20233048 20233516 -123552939 + LTR2B LTR ERV1 1 461 -29 284 279 0 13 chr12 20233695 20233774 -123552681 - MER39 LTR ERV1 -624 83 6 586 259 0 60 chr12 20233800 20233985 -123552470 + L2 LINE L2 3117 3290 -23 582 173 0 0 chr12 20233986 20234119 -123552336 + (TGGA)n Simple_repeat Simple_repeat 1 133 0 4000 165 14 11 chr12 20234445 20235155 -123551300 - MER50 LTR ERV1 -22 712 1 869 182 47 9 chr12 20235645 20235859 -123550596 + L1M4 LINE L1 4774 4995 -1151 * 5258 122 42 3 chr12 20235856 20236817 -123549638 + L1MA8 LINE L1 5231 6227 -64 666 271 53 21 chr12 20236817 20237101 -123549354 + MSTC LTR MaLR 1 293 -135 781 151 0 7 chr12 20237103 20237242 -123549213 + L1M2 LINE L1 5430 5567 -724 401 165 50 71 chr12 20237284 20237466 -123548989 + (TATG)n Simple_repeat Simple_repeat 1 178 0 739 175 26 91 chr12 20237530 20237684 -123548771 - MLT1A1 LTR MaLR -13 383 217 234 233 0 0 chr12 20237669 20237712 -123548743 + Alu SINE Alu 136 178 -130 * 1020 178 12 136 chr12 20238789 20239120 -123547335 - MLT1A1 LTR MaLR 0 365 76 985 192 0 20 chr12 20239120 20239318 -123547137 - AluJo SINE Alu -2 310 117 348 163 0 9 chr12 20239321 20239384 -123547071 - Alu SINE Alu -244 56 1 198 0 0 0 chr12 20239510 20239532 -123546923 + (A)n Simple_repeat Simple_repeat 1 22 0 1792 186 15 0 chr12 20240304 20240642 -123545813 + MER2 DNA MER2_type 1 343 -1 326 258 0 0 chr12 20243575 20243641 -123542814 + tRNA-Ile-ATT tRNA tRNA 9 74 -3 753 244 64 50 chr12 20244798 20245081 -123541374 + MLT1I LTR MaLR 20 306 -103 808 156 0 0 chr12 20245371 20245499 -123540956 + FLAM_C SINE Alu 1 128 -5 1786 194 0 6 chr12 20246031 20246345 -123540110 - AluJo SINE Alu 0 312 1 738 278 161 44 chr12 20246598 20247076 -123539379 - LTR67 LTR ERVL -4 553 20 407 260 221 16 chr12 20247597 20247921 -123538534 - L1MEc LINE L1 -5132 1815 1327 1963 140 0 20 chr12 20248238 20248531 -123537924 + AluSx SINE Alu 1 287 -25 384 22 0 0 chr12 20248534 20248579 -123537876 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 408 326 72 9 chr12 20248783 20249102 -123537353 - L1MEc LINE L1 -6023 1115 777 2363 110 0 0 chr12 20250178 20250488 -123535967 - AluSg SINE Alu 0 310 1 190 297 144 0 chr12 20250797 20250915 -123535540 - L2 LINE L2 -6 3307 3173 249 141 16 62 chr12 20251091 20251155 -123535300 - MER116 DNA Mariner 0 80 20 2852 6 0 28 chr12 20251155 20251480 -123534975 - AluYb8 SINE Alu 0 318 3 1714 180 0 35 chr12 20251595 20251912 -123534543 + AluJo SINE Alu 1 306 -6 2171 107 10 0 chr12 20252010 20252309 -123534146 + AluSx SINE Alu 1 302 -10 405 256 120 0 chr12 20252363 20252488 -123533967 - MIR SINE MIR -71 191 52 24 53 0 0 chr12 20252676 20252714 -123533741 + AT_rich Low_complexity Low_complexity 1 38 0 204 324 111 20 chr12 20253889 20254142 -123532313 + L2 LINE L2 1799 2074 -1240 206 227 15 45 chr12 20255023 20255089 -123531366 + CT-rich Low_complexity Low_complexity 2 65 0 1166 276 4 0 chr12 20257685 20257935 -123528520 + MIR SINE MIR 2 252 -10 1093 229 54 23 chr12 20258006 20258360 -123528095 + LTR40a LTR ERVL 155 519 0 258 272 0 0 chr12 20258371 20258452 -123528003 + L1ME2 LINE L1 3348 3428 -2718 2023 254 23 7 chr12 20258455 20259256 -123527199 + L1ME2 LINE L1 5062 5873 -293 30 69 0 0 chr12 20259688 20259746 -123526709 + GC_rich Low_complexity Low_complexity 1 58 0 185 0 40 0 chr12 20260159 20260184 -123526271 + (GGA)n Simple_repeat Simple_repeat 3 28 0 2182 120 0 3 chr12 20261895 20262186 -123524269 - AluSq SINE Alu -23 290 1 506 277 34 5 chr12 20262186 20262357 -123524098 + L1ME2 LINE L1 5921 6091 -71 284 349 86 0 chr12 20262480 20262632 -123523823 + MIR SINE MIR 73 237 -25 10342 129 37 27 chr12 20263345 20265173 -123521282 - Tigger1 DNA MER2_type -572 1846 1 355 311 67 7 chr12 20265173 20265308 -123521147 + MIR SINE MIR 5 147 -115 255 204 0 0 chr12 20265333 20265387 -123521068 + (TA)n Simple_repeat Simple_repeat 1 54 0 243 0 0 0 chr12 20265889 20265916 -123520539 + (T)n Simple_repeat Simple_repeat 1 27 0 28 0 0 0 chr12 20266009 20266037 -123520418 + GC_rich Low_complexity Low_complexity 1 28 0 396 0 0 0 chr12 20267461 20267505 -123518950 + (TG)n Simple_repeat Simple_repeat 2 45 0 2218 112 7 3 chr12 20268059 20268355 -123518100 + AluSq SINE Alu 1 297 -16 436 245 72 29 chr12 20268506 20268645 -123517810 + MIR SINE MIR 30 174 -88 2239 88 0 33 chr12 20268754 20269059 -123517396 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr12 20269160 20269183 -123517272 + (TA)n Simple_repeat Simple_repeat 2 24 0 2199 104 3 7 chr12 20269915 20270213 -123516242 - AluSc SINE Alu -12 297 1 1590 168 7 58 chr12 20270257 20270420 -123516035 - AluJo SINE Alu -14 298 157 2370 97 0 0 chr12 20270420 20270718 -123515737 - AluSc SINE Alu -11 298 1 1590 168 7 58 chr12 20270718 20270864 -123515591 - AluJo SINE Alu -155 157 5 2018 147 3 0 chr12 20271347 20271647 -123514808 - AluJb SINE Alu -11 301 1 27 62 0 0 chr12 20271688 20271736 -123514719 + AT_rich Low_complexity Low_complexity 1 48 0 2302 100 3 0 chr12 20273604 20273904 -123512551 + AluSx SINE Alu 1 301 -11 276 353 75 40 chr12 20274082 20274255 -123512200 - MIR SINE MIR -50 212 34 21 0 0 0 chr12 20274577 20274598 -123511857 + AT_rich Low_complexity Low_complexity 1 21 0 260 308 0 0 chr12 20276006 20276071 -123510384 + CT-rich Low_complexity Low_complexity 2 66 0 654 132 93 39 chr12 20276885 20277014 -123509441 + FRAM SINE Alu 24 159 -17 1564 173 23 47 chr12 20277016 20277316 -123509139 + AluJo SINE Alu 1 293 -19 22 35 0 0 chr12 20277316 20277345 -123509110 + AT_rich Low_complexity Low_complexity 1 29 0 2315 52 18 0 chr12 20277357 20277643 -123508812 - AluY SINE Alu -20 291 1 414 311 112 31 chr12 20277892 20278053 -123508402 - MER91A DNA MER1_type -18 178 5 847 284 86 0 chr12 20278213 20278445 -123508010 + MIR SINE MIR 1 252 -10 2373 100 0 0 chr12 20278599 20278909 -123507546 + AluSg SINE Alu 1 310 0 343 312 8 16 chr12 20280179 20280304 -123506151 - MIR SINE MIR -94 168 45 385 296 45 18 chr12 20281335 20281555 -123504900 + L1ME3A LINE L1 2395 2620 -3526 563 240 7 27 chr12 20281693 20281843 -123504612 - MER58C DNA MER1_type -68 147 1 872 152 8 0 chr12 20281888 20282020 -123504435 + FLAM_C SINE Alu 1 133 -10 1689 245 75 109 chr12 20282032 20282071 -123504384 + L1ME3A LINE L1 3357 3396 -2774 2010 151 3 0 chr12 20282071 20282375 -123504080 + AluSx SINE Alu 1 305 -7 1689 245 75 109 chr12 20282375 20285123 -123501332 + L1ME3A LINE L1 3396 6047 -123 3320 78 2 21 chr12 20285123 20285462 -123500993 - L1PA14 LINE L1 -1 6160 5831 1996 100 0 15 chr12 20285462 20285732 -123500723 - AluSc SINE Alu -9 300 35 3320 78 2 21 chr12 20285732 20285868 -123500587 - L1PA14 LINE L1 -330 5831 5694 1689 245 75 109 chr12 20285868 20285898 -123500557 + L1ME3A LINE L1 6047 6077 -93 2394 96 0 6 chr12 20285932 20286244 -123500211 - AluSx SINE Alu -2 310 1 1136 151 14 119 chr12 20286864 20287149 -123499306 + AluJo SINE Alu 39 293 -19 181 364 0 0 chr12 20289899 20289965 -123496490 - L2 LINE L2 -451 2863 2798 991 266 89 51 chr12 20290398 20290872 -123495583 + MLT1J LTR MaLR 1 492 -19 227 234 0 0 chr12 20291026 20291073 -123495382 + MLT1I LTR MaLR 98 144 -265 260 193 26 13 chr12 20291266 20291344 -123495111 + MLT1H LTR MaLR 317 546 -3 2104 106 28 0 chr12 20291510 20291792 -123494663 + AluSx SINE Alu 1 290 -22 203 175 0 0 chr12 20292141 20292181 -123494274 + T-rich Low_complexity Low_complexity 1 40 0 293 206 262 16 chr12 20292395 20292521 -123493934 + MLT2E LTR ERVL 296 452 -176 2142 135 3 3 chr12 20292648 20292960 -123493495 - AluSx SINE Alu 0 312 1 1817 168 21 0 chr12 20293192 20293483 -123492972 + AluJo SINE Alu 2 298 -14 489 53 0 40 chr12 20293999 20294075 -123492380 + L1PA7 LINE L1 6082 6154 0 1798 201 16 26 chr12 20294314 20294692 -123491763 - MLT1A2 LTR MaLR 0 374 1 1388 249 73 39 chr12 20295569 20296034 -123490421 - MLT1H1 LTR MaLR 0 555 75 883 233 138 63 chr12 20297104 20297546 -123488909 - MLT1H LTR MaLR -1 548 74 489 34 0 0 chr12 20298081 20298140 -123488315 + (TA)n Simple_repeat Simple_repeat 1 59 0 832 129 0 0 chr12 20298404 20298528 -123487927 + AluJb SINE Alu 180 303 -9 2916 132 43 62 chr12 20299356 20299653 -123486802 - L1MB4 LINE L1 -1 6179 5899 2367 66 0 7 chr12 20299653 20299956 -123486499 - AluY SINE Alu -10 301 1 2916 132 43 62 chr12 20299956 20300266 -123486189 - L1MB4 LINE L1 -281 5899 5584 1074 185 5 5 chr12 20300282 20300471 -123485984 - AluJo SINE Alu -19 293 105 1744 142 4 4 chr12 20301043 20301297 -123485158 + AluJb SINE Alu 1 254 -58 1577 150 61 64 chr12 20301986 20302149 -123484306 + AluJo SINE Alu 1 164 -148 2421 77 0 3 chr12 20302149 20302448 -123484007 + AluY SINE Alu 1 298 -13 1000 141 0 0 chr12 20302448 20302597 -123483858 + FRAM SINE Alu 1 40 0 872 167 0 29 chr12 20302630 20302768 -123483687 + AluJo SINE Alu 1 134 -178 716 104 0 0 chr12 20303123 20303594 -123482861 + AluSx SINE Alu 3 473 0 931 120 0 22 chr12 20303411 20303633 -123482822 + (GAAA)n Simple_repeat Simple_repeat 2 219 0 306 0 0 0 chr12 20303924 20303958 -123482497 + (TG)n Simple_repeat Simple_repeat 2 35 0 1883 189 113 0 chr12 20304188 20304569 -123481886 - MSTB LTR MaLR -2 424 1 1528 189 35 7 chr12 20304593 20304879 -123481576 + AluJo SINE Alu 1 294 -18 225 321 12 12 chr12 20305178 20305259 -123481196 + L3 LINE CR1 1473 1553 -24 712 289 88 29 chr12 20305444 20305538 -123480917 - L1ME4a LINE L1 -5 6116 6029 2182 122 0 0 chr12 20305538 20305825 -123480630 + AluSx SINE Alu 1 287 -25 712 289 88 29 chr12 20305825 20306312 -123480143 - L1ME4a LINE L1 -92 6029 5501 293 197 26 66 chr12 20306383 20306459 -123479996 + L2 LINE L2 3241 3313 0 810 243 6 0 chr12 20306618 20306795 -123479660 + MER45A DNA AcHobo 1 178 0 2281 115 0 3 chr12 20307592 20307904 -123478551 - AluSq SINE Alu -2 311 1 2017 127 0 3 chr12 20308238 20308544 -123477911 - AluSg SINE Alu 0 305 1 295 224 158 0 chr12 20309012 20309088 -123477367 - L2 LINE L2 -1 3271 3184 938 277 52 47 chr12 20309088 20309554 -123476901 - MLT1J LTR MaLR 0 511 44 209 254 0 75 chr12 20310794 20310861 -123475594 - L2 LINE L2 0 3272 3211 24 0 0 0 chr12 20310927 20310951 -123475504 + AT_rich Low_complexity Low_complexity 1 24 0 262 61 41 0 chr12 20311410 20311459 -123474996 + (TA)n Simple_repeat Simple_repeat 2 52 0 327 387 61 11 chr12 20311896 20312077 -123474378 - L2 LINE L2 -189 3083 2894 370 315 112 52 chr12 20312153 20312610 -123473845 - L2 LINE L2 -531 2783 2219 405 330 27 5 chr12 20312614 20312799 -123473656 - MER5A DNA MER1_type 0 189 1 373 283 65 28 chr12 20312806 20313053 -123473402 - L2 LINE L2 -1262 2052 1797 348 288 55 68 chr12 20313450 20313596 -123472859 - MIR3 SINE MIR -62 146 3 1766 174 3 20 chr12 20314433 20314737 -123471718 + AluSx SINE Alu 1 299 -13 320 292 68 30 chr12 20316392 20316578 -123469877 + MIR3 SINE MIR 3 192 -70 2400 66 7 0 chr12 20316845 20317150 -123469305 - AluY SINE Alu -4 307 1 2541 52 0 0 chr12 20317377 20317686 -123468769 - AluY SINE Alu -2 309 1 421 282 61 0 chr12 20317700 20317881 -123468574 + L1ME4a LINE L1 5602 5793 -328 411 322 192 9 chr12 20317895 20318109 -123468346 + MIR SINE MIR 8 260 -2 397 293 29 29 chr12 20318230 20318404 -123468051 + L1ME4a LINE L1 5947 6120 -1 2514 50 0 0 chr12 20318517 20318816 -123467639 - AluY SINE Alu -8 303 5 41 30 0 15 chr12 20319885 20319910 -123466545 + AT_rich Low_complexity Low_complexity 1 25 -40 1152 84 0 0 chr12 20319910 20320064 -123466391 + L1PB1 LINE L1 5997 6150 -1 41 30 0 15 chr12 20320064 20320104 -123466351 + AT_rich Low_complexity Low_complexity 25 65 0 1971 147 0 13 chr12 20320327 20320626 -123465829 + AluSx SINE Alu 3 297 -15 209 321 12 12 chr12 20321410 20321491 -123464964 - L2 LINE L2 -213 3059 2979 591 349 144 23 chr12 20321673 20322320 -123464135 - L2 LINE L2 -561 2753 1961 2187 118 3 7 chr12 20322320 20322625 -123463830 - AluSx SINE Alu -7 305 2 591 349 144 23 chr12 20322625 20322894 -123463561 - L2 LINE L2 -1353 1961 1726 186 161 0 0 chr12 20323571 20323602 -123462853 - MIR SINE MIR -8 254 224 260 357 18 30 chr12 20323602 20323770 -123462685 - L2 LINE L2 -159 3113 2948 262 169 0 62 chr12 20323808 20323873 -123462582 - L2 LINE L2 -660 2654 2594 2378 75 9 25 chr12 20323929 20324247 -123462208 - AluSp SINE Alu 0 313 1 2254 210 11 11 chr12 20324403 20324870 -123461585 + MLT1C LTR MaLR 1 467 0 741 283 50 35 chr12 20325646 20325929 -123460526 - MLT1I LTR MaLR -7 402 116 287 271 45 39 chr12 20326143 20326298 -123460157 - MER103 DNA DNA -2 164 9 23 33 0 0 chr12 20326412 20326442 -123460013 + AT_rich Low_complexity Low_complexity 1 30 0 1681 174 0 27 chr12 20326691 20327013 -123459442 - AluJb SINE Alu 0 312 1 21 36 0 0 chr12 20327234 20327262 -123459193 + AT_rich Low_complexity Low_complexity 1 28 0 2128 121 0 10 chr12 20327741 20328039 -123458416 + AluSx SINE Alu 1 295 -17 25 51 0 0 chr12 20328062 20328101 -123458354 + AT_rich Low_complexity Low_complexity 1 39 0 212 167 24 0 chr12 20328109 20328151 -123458304 + (CA)n Simple_repeat Simple_repeat 1 43 0 * 220 191 0 0 chr12 20328146 20328188 -123458267 + (CAA)n Simple_repeat Simple_repeat 2 43 0 207 0 0 0 chr12 20330113 20330136 -123456319 + (A)n Simple_repeat Simple_repeat 1 23 0 2060 144 7 0 chr12 20330241 20330546 -123455909 - AluSx SINE Alu -5 307 1 2090 133 3 19 chr12 20331386 20331703 -123454752 + AluSx SINE Alu 1 312 0 809 161 84 7 chr12 20331936 20332079 -123454376 + FRAM SINE Alu 1 145 -31 4643 73 5 8 chr12 20332341 20332928 -123453527 + SVA Other Other 802 1386 0 2459 67 0 0 chr12 20333928 20334225 -123452230 - AluSg SINE Alu -13 297 1 1050 198 0 6 chr12 20334353 20334535 -123451920 - AluJo SINE Alu -12 300 120 1668 126 0 0 chr12 20334833 20335063 -123451392 + AluSg/x SINE Alu 80 309 -1 1773 177 19 19 chr12 20336016 20336327 -123450128 + AluJo SINE Alu 2 312 0 453 81 0 0 chr12 20336780 20336842 -123449613 + (TA)n Simple_repeat Simple_repeat 1 62 0 1687 184 54 3 chr12 20337107 20337439 -123449016 - MLT1C LTR MaLR 0 467 119 * 2023 189 78 25 chr12 20337433 20337999 -123448456 + LTR1B LTR ERV1 231 826 0 595 277 131 18 chr12 20338326 20338654 -123447801 + MLT1G1 LTR MaLR 231 595 0 1259 148 14 23 chr12 20338813 20339029 -123447426 + L1PB4 LINE L1 5938 6151 -5 1812 160 3 7 chr12 20339032 20339335 -123447120 - AluJb SINE Alu 0 302 1 355 366 41 5 chr12 20339368 20339562 -123446893 + MIR SINE MIR 61 261 -1 634 355 96 15 chr12 20339586 20339994 -123446461 - L2 LINE L2 -6 3266 2826 581 301 75 25 chr12 20341833 20342072 -123444383 + MIR SINE MIR 6 256 -6 853 323 92 11 chr12 20342090 20342802 -123443653 - L2 LINE L2 -1 3312 2524 1876 169 0 3 chr12 20342819 20343115 -123443340 + AluJb SINE Alu 1 295 -17 1218 204 5 0 chr12 20344233 20344454 -123442001 - AluJo SINE Alu -6 306 85 453 355 62 5 chr12 20344718 20344929 -123441526 - MIR SINE MIR -12 250 28 339 311 23 15 chr12 20345283 20345415 -123441040 + MLT1J LTR MaLR 2 134 -377 2169 181 106 53 chr12 20345445 20345916 -123440539 - MER92B LTR ERV1 0 636 125 2154 124 134 11 chr12 20345916 20346296 -123440159 - MSTA LTR MaLR 0 428 2 2169 181 106 53 chr12 20346296 20346428 -123440027 - MER92B LTR ERV1 -511 125 1 427 205 18 94 chr12 20346505 20346676 -123439779 + MLT1J LTR MaLR 318 475 -36 1017 207 110 61 chr12 20347187 20347638 -123438817 + MER39 LTR ERV1 67 707 0 2672 180 104 16 chr12 20348281 20348849 -123437606 - LTR26E LTR ERV1 -4 618 1 328 259 9 28 chr12 20349367 20349475 -123436980 + MER34 LTR ERV1 25 130 -412 2243 110 7 3 chr12 20349762 20350070 -123436385 - AluSx SINE Alu -3 309 1 326 219 21 52 chr12 20350513 20350609 -123435846 + L2 LINE L2 3221 3313 0 2740 203 99 58 chr12 20350625 20351439 -123435016 + MER21B LTR ERV1 5 852 -11 216 351 121 17 chr12 20351598 20351772 -123434683 + MIR SINE MIR 71 262 0 973 231 100 31 chr12 20352078 20352219 -123434236 + MER93a LTR ERV1 61 191 -211 1841 136 70 0 chr12 20352219 20352535 -123433920 + MER44D DNA MER2_type 2 609 0 973 231 100 31 chr12 20352535 20352713 -123433742 + MER93a LTR ERV1 191 402 0 1139 175 9 33 chr12 20353108 20353319 -123433136 - AluJo SINE Alu -21 291 86 2202 85 4 0 chr12 20354555 20354871 -123431584 - AluSx SINE Alu 0 317 1 326 318 65 50 chr12 20355468 20355669 -123430786 - L2 LINE L2 -175 3097 2894 207 315 77 23 chr12 20355720 20355850 -123430605 - L2 LINE L2 -558 2756 2620 551 197 62 68 chr12 20355913 20356059 -123430396 - MLT2D LTR ERVL -40 480 237 371 164 27 9 chr12 20356059 20356169 -123430286 + (TA)n Simple_repeat Simple_repeat 2 113 0 272 151 57 0 chr12 20356171 20356224 -123430231 + MLT2D LTR ERVL 234 289 -125 243 169 0 0 chr12 20356237 20356308 -123430147 + (TA)n Simple_repeat Simple_repeat 1 71 0 226 233 82 92 chr12 20356308 20356514 -123429941 + HAL1 LINE L1 837 1040 -1467 193 222 0 56 chr12 20357022 20357076 -123429379 - L2 LINE L2 0 3313 3263 1897 125 78 33 chr12 20358670 20359029 -123427426 - THE1C LTR MaLR 0 375 1 7434 142 7 43 chr12 20359031 20360391 -123426064 - THE1C-int LTR MaLR -2 1578 269 1184 147 30 22 chr12 20360491 20360723 -123425732 + THE1C LTR MaLR 142 375 0 1520 93 0 4 chr12 20360724 20360949 -123425506 - THE1C-int LTR MaLR -1354 226 3 1908 124 93 34 chr12 20360951 20361305 -123425150 - THE1C LTR MaLR 0 375 1 2421 229 84 20 chr12 20361412 20362112 -123424343 - MER21B LTR ERV1 -107 756 12 266 316 22 104 chr12 20362929 20363075 -123423380 - L2 LINE L2 -562 2752 2636 2161 122 0 0 chr12 20363075 20363362 -123423093 + AluSg SINE Alu 5 291 -19 266 316 22 104 chr12 20363362 20363484 -123422971 - L2 LINE L2 -678 2636 2506 2039 162 68 16 chr12 20363770 20364208 -123422247 - LOR1b LTR ERV1 0 461 1 472 330 123 37 chr12 20364517 20365107 -123421348 - L2 LINE L2 0 3272 2647 390 42 0 0 chr12 20367931 20367979 -123418476 + (TG)n Simple_repeat Simple_repeat 2 49 0 798 217 42 19 chr12 20368096 20368359 -123418096 - MER69 DNA AcHobo -7 2519 2251 * 1963 246 74 50 chr12 20368357 20368601 -123417854 - MER69 DNA AcHobo -1425 1101 864 612 211 31 0 chr12 20368601 20368729 -123417726 - FLAM_A SINE Alu -1 132 1 1963 246 74 50 chr12 20368729 20369482 -123416973 - MER69 DNA AcHobo -1662 864 1 2145 132 0 6 chr12 20369598 20369909 -123416546 + AluSq SINE Alu 1 309 -4 3818 44 0 0 chr12 20370349 20370808 -123415647 - L1PA3 LINE L1 -5 6150 5692 2290 88 0 32 chr12 20370916 20371224 -123415231 + AluSx SINE Alu 1 298 -14 415 367 54 17 chr12 20371349 20371589 -123414866 - L2 LINE L2 -220 3052 2804 349 248 72 20 chr12 20371745 20371898 -123414557 + L1MC4a LINE L1 6137 6297 -1511 8419 135 36 2 chr12 20371898 20373324 -123413131 + Tigger1 DNA MER2_type 1 1475 -943 5292 85 8 30 chr12 20373328 20374129 -123412326 + L1PA11 LINE L1 5384 6166 -8 4701 133 90 27 chr12 20374144 20374835 -123411620 + Tigger1 DNA MER2_type 1465 2227 -191 2092 143 10 0 chr12 20374835 20375143 -123411312 - AluSx SINE Alu -1 311 1 4701 133 90 27 chr12 20375143 20375347 -123411108 + Tigger1 DNA MER2_type 2227 2417 -1 1303 236 73 13 chr12 20375417 20375870 -123410585 + L1MC4 LINE L1 6599 7078 -964 1252 191 0 42 chr12 20375877 20376113 -123410342 + AluJo SINE Alu 87 312 0 1941 204 60 23 chr12 20376138 20376618 -123409837 + L1MC4 LINE L1 7191 7688 -354 857 107 7 14 chr12 20376637 20376777 -123409678 - L1PA14 LINE L1 0 6161 6023 1911 203 27 47 chr12 20376787 20376839 -123409616 + L1ME LINE L1 5150 5202 -964 2191 120 0 16 chr12 20376839 20377155 -123409300 + AluSx SINE Alu 1 311 -1 1911 203 27 47 chr12 20377155 20377689 -123408766 + L1ME LINE L1 5202 5723 -443 1443 267 71 53 chr12 20377689 20377842 -123408613 + L2 LINE L2 2550 2699 -614 2992 55 3 8 chr12 20377842 20378227 -123408228 - L1PA7 LINE L1 -1 6153 5771 1443 267 71 53 chr12 20378227 20378628 -123407827 + L2 LINE L2 2699 3165 -148 2349 84 3 23 chr12 20378628 20378938 -123407517 - AluSp SINE Alu -9 304 1 1443 267 71 53 chr12 20378938 20379090 -123407365 + L2 LINE L2 3165 3313 0 1608 177 52 0 chr12 20384677 20384847 -123401608 - AluJo SINE Alu -9 303 110 180 0 0 0 chr12 20384847 20384867 -123401588 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 1608 177 52 0 chr12 20384867 20384984 -123401471 - AluJo SINE Alu -202 110 1 1925 89 75 14 chr12 20385845 20386126 -123400329 - AluSq SINE Alu -15 298 1 181 189 0 57 chr12 20386412 20386465 -123399990 - MIR SINE MIR -45 217 168 2370 95 0 0 chr12 20387095 20387391 -123399064 + AluSx SINE Alu 6 301 -11 364 346 96 51 chr12 20387632 20388120 -123398335 - L2 LINE L2 -459 2855 2346 504 271 107 23 chr12 20388305 20388482 -123397973 - L2 LINE L2 -2 3311 3120 205 314 15 73 chr12 20388914 20389051 -123397404 - L2 LINE L2 -68 3245 3117 210 257 188 30 chr12 20389340 20389441 -123397014 + L2 LINE L2 3151 3267 -5 2094 107 0 17 chr12 20389594 20389892 -123396563 - AluSx SINE Alu -19 293 1 1757 153 10 43 chr12 20390876 20391176 -123395279 + AluJo SINE Alu 1 290 -22 2348 165 105 31 chr12 20391481 20392088 -123394367 - L1MA9 LINE L1 -168 6144 5493 371 258 32 8 chr12 20392206 20392330 -123394125 - L1ME4a LINE L1 -1 6120 5994 231 293 37 18 chr12 20392346 20392510 -123393945 + (TA)n Simple_repeat Simple_repeat 2 168 0 275 198 0 143 chr12 20392807 20392898 -123393557 - L1ME4a LINE L1 -538 5583 5506 388 237 101 0 chr12 20393007 20393146 -123393309 - MLT1H1 LTR MaLR -3 552 400 333 289 83 22 chr12 20393408 20393588 -123392867 + MER117 DNA MER1_type 1 191 -6 390 345 115 14 chr12 20394200 20394478 -123391977 - L1ME4a LINE L1 -89 6032 5727 310 254 71 25 chr12 20394986 20395190 -123391265 - L1ME4a LINE L1 -651 5511 5299 311 196 0 103 chr12 20395252 20395359 -123391096 - Charlie7 DNA MER1_type -6 2606 2511 431 129 69 10 chr12 20395363 20395464 -123390991 - Charlie7 DNA MER1_type -2455 157 51 192 77 0 0 chr12 20396385 20396411 -123390044 + (T)n Simple_repeat Simple_repeat 1 26 0 1848 160 3 7 chr12 20396542 20396836 -123389619 - AluJo SINE Alu -19 293 1 2322 111 0 0 chr12 20396845 20397152 -123389303 - AluSx SINE Alu -2 310 4 1361 254 62 47 chr12 20397990 20398029 -123388426 - MLT1H LTR MaLR 0 549 512 2231 86 7 10 chr12 20398029 20398332 -123388123 + AluY SINE Alu 10 311 0 1361 254 62 47 chr12 20398332 20398828 -123387627 - MLT1H LTR MaLR -37 512 6 419 349 51 20 chr12 20399239 20399434 -123387021 + L2 LINE L2 3104 3304 -9 243 343 140 19 chr12 20399605 20399920 -123386535 - L2 LINE L2 -2200 1114 762 284 343 106 16 chr12 20399924 20400178 -123386277 - L2 LINE L2 -2881 433 157 2487 70 0 0 chr12 20400664 20400965 -123385490 - AluY SINE Alu -10 301 1 301 308 47 0 chr12 20401657 20401764 -123384691 - L1ME4a LINE L1 -891 5255 5144 836 264 37 77 chr12 20401945 20402244 -123384211 - L1ME4a LINE L1 -2097 4049 3775 1438 179 20 13 chr12 20402244 20402546 -123383909 - L1MC1 LINE L1 -15 6318 6015 836 264 37 77 chr12 20402546 20402728 -123383727 - L1ME4a LINE L1 -2371 3775 3587 516 286 100 76 chr12 20402739 20403109 -123383346 - L1ME4a LINE L1 -3575 2571 2193 189 121 0 0 chr12 20404992 20405025 -123381430 + (T)n Simple_repeat Simple_repeat 1 33 0 1682 122 17 54 chr12 20405568 20405864 -123380591 + AluSx SINE Alu 7 291 -21 339 25 0 0 chr12 20405893 20405933 -123380522 + (CA)n Simple_repeat Simple_repeat 2 41 0 201 344 62 31 chr12 20406073 20406169 -123380286 - L2 LINE L2 -23 3249 3151 206 256 12 49 chr12 20406374 20406456 -123379999 - MIR SINE MIR -14 248 170 2228 75 0 4 chr12 20406891 20407169 -123379286 + AluY SINE Alu 16 292 -19 305 231 308 14 chr12 20409244 20409465 -123376990 - L1ME4a LINE L1 -2 6119 5834 23 0 0 0 chr12 20409614 20409637 -123376818 + AT_rich Low_complexity Low_complexity 1 23 0 242 146 0 73 chr12 20410370 20410425 -123376030 + MER5B DNA MER1_type 128 178 0 1020 177 35 0 chr12 20410768 20410971 -123375484 - Charlie4 DNA MER1_type -1735 226 17 209 229 49 33 chr12 20411193 20411254 -123375201 - MIR SINE MIR -10 252 191 255 320 41 25 chr12 20411499 20411621 -123374834 + MIR SINE MIR 86 209 -53 419 278 58 68 chr12 20411771 20411976 -123374479 - MIR SINE MIR -3 259 57 851 114 0 0 chr12 20461977 20462100 -123324355 - L1P5 LINE L1 -496 5660 5538 313 329 92 38 chr12 20462511 20462751 -123323704 - MIR SINE MIR -3 259 7 1994 123 3 23 chr12 20462925 20463234 -123323221 + AluJb SINE Alu 4 306 -6 200 176 20 20 chr12 20463293 20463344 -123323111 + (TA)n Simple_repeat Simple_repeat 2 52 0 294 259 26 17 chr12 20463345 20463461 -123322994 - L1ME4a LINE L1 -1942 5866 5750 264 59 0 0 chr12 20464332 20464366 -123322089 + (T)n Simple_repeat Simple_repeat 1 34 0 199 328 80 42 chr12 20464555 20464817 -123321638 + L2 LINE L2 1834 2105 -1209 416 306 261 13 chr12 20464880 20465187 -123321268 + L2 LINE L2 2904 3286 -27 513 0 0 0 chr12 20465214 20465271 -123321184 + (TG)n Simple_repeat Simple_repeat 2 58 0 1051 276 140 52 chr12 20465418 20466195 -123320260 + L2 LINE L2 2450 3311 -2 21 0 0 0 chr12 20466404 20466425 -123320030 + AT_rich Low_complexity Low_complexity 1 21 0 2509 123 63 19 chr12 20467346 20467819 -123318636 + L1MA4A LINE L1 5808 6301 -2 3115 212 62 26 chr12 20468255 20469517 -123316938 + L1MB7 LINE L1 4857 6171 -13 342 317 85 18 chr12 20469732 20469896 -123316559 + MIR SINE MIR 48 222 -40 307 155 35 0 chr12 20470190 20470248 -123316207 + L1MC1 LINE L1 6110 6169 -164 196 291 13 25 chr12 20474307 20474386 -123312069 + MIR SINE MIR 21 98 -110 238 280 0 0 chr12 20475609 20475659 -123310796 + L2 LINE L2 3210 3259 -13 2192 91 10 7 chr12 20475662 20475958 -123310497 + AluSq SINE Alu 1 297 -16 277 328 147 17 chr12 20476280 20476396 -123310059 + 7SLRNA srpRNA srpRNA 25 155 -165 8065 134 20 2 chr12 20476520 20477795 -123308660 + HSMAR2 DNA Mariner 2 1300 -2 23 68 0 0 chr12 20478622 20478666 -123307789 + AT_rich Low_complexity Low_complexity 1 44 0 959 208 153 64 chr12 20478750 20479169 -123307286 + MLT1D LTR MaLR 7 462 -43 1553 131 15 12 chr12 20479174 20479622 -123306833 - LTR54 LTR ERV1 0 510 2 311 154 0 0 chr12 20479629 20479681 -123306774 - MLT1D LTR MaLR 0 505 454 582 140 0 11 chr12 20479735 20479828 -123306627 + AluSg/x SINE Alu 191 282 -27 1464 135 9 0 chr12 20479937 20480152 -123306303 + AluSq SINE Alu 1 217 -96 195 69 0 0 chr12 20480359 20480388 -123306067 + (T)n Simple_repeat Simple_repeat 1 29 0 227 292 92 15 chr12 20480409 20480474 -123305981 - MIR SINE MIR -185 77 8 207 344 0 0 chr12 20480768 20480829 -123305626 - L2 LINE L2 -227 3045 2985 188 339 91 8 chr12 20482225 20482346 -123304109 - L2 LINE L2 -1965 1349 1219 2340 85 3 0 chr12 20482432 20482725 -123303730 + AluSx SINE Alu 1 294 -18 23 33 0 0 chr12 20482829 20482859 -123303596 + AT_rich Low_complexity Low_complexity 1 30 0 2291 107 0 0 chr12 20483917 20484215 -123302240 + AluSx SINE Alu 1 298 -14 222 228 0 152 chr12 20484713 20484792 -123301663 - L2 LINE L2 -1 3312 3246 199 318 71 19 chr12 20485211 20485365 -123301090 - L2 LINE L2 -1341 1973 1812 460 177 150 9 chr12 20485450 20485563 -123300892 - MLT1F1 LTR MaLR -6 561 433 233 167 0 0 chr12 20485560 20485596 -123300859 - MLT1F LTR MaLR -506 36 1 * 203 120 0 20 chr12 20486430 20486480 -123299975 + (TTTTTA)n Simple_repeat Simple_repeat 1 49 0 459 0 0 0 chr12 20486481 20486537 -123299918 - L1HS LINE L1 -2 6153 6098 1151 192 0 63 chr12 20486569 20486824 -123299631 - MER8 DNA MER2_type 0 239 1 2176 116 0 10 chr12 20487461 20487762 -123298693 + AluSq SINE Alu 1 298 -15 198 294 63 32 chr12 20488207 20488333 -123298122 + MIR SINE MIR 79 208 -54 1604 104 0 0 chr12 20488705 20488917 -123297538 + AluSg/x SINE Alu 98 309 -3 569 174 0 0 chr12 20489851 20489943 -123296512 - AluJ/FLAM SINE Alu -220 92 1 280 261 55 20 chr12 20489946 20490188 -123296267 + L1P LINE L1 5054 5300 -846 2037 130 10 0 chr12 20490191 20490498 -123295957 + AluSx SINE Alu 1 310 -2 216 0 0 0 chr12 20491799 20491823 -123294632 + (T)n Simple_repeat Simple_repeat 1 24 0 2073 134 3 6 chr12 20492126 20492439 -123294016 - AluSx SINE Alu 0 312 1 2119 125 6 0 chr12 20492949 20493260 -123293195 - AluSq SINE Alu 0 313 1 849 194 68 10 chr12 20493424 20493630 -123292825 + MER20 DNA MER1_type 2 219 0 614 223 0 0 chr12 20493740 20493852 -123292603 + MIR SINE MIR 11 122 -140 236 254 15 0 chr12 20493899 20493966 -123292489 + (CATATA)n Simple_repeat Simple_repeat 1 68 0 2339 160 26 33 chr12 20493966 20494385 -123292070 + MER44D DNA MER2_type 1 471 -134 684 205 0 0 chr12 20494395 20494512 -123291943 - FLAM_C SINE Alu -16 117 1 228 59 0 0 chr12 20494513 20494547 -123291908 + MER44D DNA MER2_type 458 491 -114 300 183 0 56 chr12 20494548 20494619 -123291836 - L2 LINE L2 -71 3242 3176 1184 150 25 93 chr12 20494804 20495084 -123291371 - Tigger3(Golem) DNA MER2_type -7 3022 2762 1613 145 4 0 chr12 20495085 20495327 -123291128 + AluSx SINE Alu 21 263 -49 746 232 0 0 chr12 20495351 20495493 -123290962 - AluJb SINE Alu -42 270 129 820 124 18 0 chr12 20495498 20495611 -123290844 + FRAM SINE Alu 32 146 -30 38 22 0 0 chr12 20495625 20495670 -123290785 + AT_rich Low_complexity Low_complexity 1 45 0 1899 83 40 0 chr12 20496927 20497180 -123289275 - AluSx SINE Alu -14 298 36 32 0 0 0 chr12 20498574 20498606 -123287849 + AT_rich Low_complexity Low_complexity 1 32 0 298 284 46 9 chr12 20499246 20499355 -123287100 - MIR SINE MIR -77 185 73 2020 120 0 7 chr12 20500120 20500432 -123286023 + AluSx SINE Alu 1 310 0 2046 133 3 22 chr12 20500873 20501188 -123285267 - AluSx SINE Alu -3 309 1 1602 178 22 0 chr12 20501910 20502015 -123284440 + AluJo SINE Alu 21 122 -190 242 28 0 28 chr12 20502015 20502051 -123284404 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1602 178 22 0 chr12 20502051 20502221 -123284234 + AluJo SINE Alu 122 302 -10 189 0 0 0 chr12 20503842 20503863 -123282592 + (T)n Simple_repeat Simple_repeat 1 21 0 282 239 87 0 chr12 20506105 20506197 -123280258 - HAL1b LINE L1 0 1348 1249 704 257 122 14 chr12 20506218 20506440 -123280015 - MIR SINE MIR -14 248 3 332 278 135 53 chr12 20506640 20506921 -123279534 - L1ME LINE L1 -439 5682 5379 776 303 16 12 chr12 20506939 20507190 -123279265 + MIR SINE MIR 2 253 -9 222 287 79 114 chr12 20508263 20508465 -123277990 - L2 LINE L2 -63 3209 3015 219 254 16 0 chr12 20508980 20509043 -123277412 + L2 LINE L2 1932 1995 -1319 305 280 13 0 chr12 20510234 20510309 -123276146 + L2 LINE L2 2986 3061 -252 23 54 0 0 chr12 20510817 20510854 -123275601 + AT_rich Low_complexity Low_complexity 1 37 0 347 227 18 64 chr12 20510967 20511077 -123275378 + L1MC4 LINE L1 6599 6703 -1339 7056 117 135 102 chr12 20511688 20513332 -123273123 + pTR5 LTR ERV1 741 2438 0 485 234 167 31 chr12 20513924 20514116 -123272339 + MIR SINE MIR 26 243 -19 314 318 110 13 chr12 20514808 20514962 -123271493 + MLT1J LTR MaLR 1 169 -342 259 195 61 49 chr12 20515096 20515178 -123271277 + MLT1J LTR MaLR 377 459 -52 314 234 46 138 chr12 20515194 20515412 -123271043 - MLT1L LTR MaLR -417 198 1 2418 139 31 7 chr12 20516046 20516471 -123269984 + L1MB5 LINE L1 5536 5970 -204 538 198 0 33 chr12 20516475 20516596 -123269859 + L1MB5 LINE L1 6057 6173 -1 630 201 119 0 chr12 20517318 20517452 -123269003 - FAM SINE Alu -35 150 1 198 0 0 0 chr12 20517915 20517937 -123268518 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 239 281 0 18 chr12 20518704 20518761 -123267694 + MER113 DNA MER1_type? 464 519 -2 348 245 32 21 chr12 20518995 20519089 -123267366 + HsTC2 DNA Tc2 50 144 -1754 296 266 199 6 chr12 20519102 20519259 -123267196 + HsTC2 DNA Tc2 1295 1481 -417 180 77 0 0 chr12 20519288 20519314 -123267141 + (A)n Simple_repeat Simple_repeat 1 26 0 288 211 0 0 chr12 20520126 20520202 -123266253 + (TA)n Simple_repeat Simple_repeat 1 76 0 743 131 0 77 chr12 20520202 20520332 -123266123 - FLAM_A SINE Alu -13 120 1 844 118 99 0 chr12 20520345 20520497 -123265958 - L1MC3 LINE L1 -169 7616 7450 5065 170 56 7 chr12 20520509 20521513 -123264942 - L1MC3 LINE L1 -746 5400 5281 856 139 16 0 chr12 20522811 20522940 -123263515 - AluSq/x SINE Alu -181 131 1 2176 116 0 10 chr12 20523100 20523401 -123263054 + AluSq SINE Alu 1 298 -15 212 333 48 16 chr12 20523846 20523972 -123262483 + MIR SINE MIR 79 208 -54 1885 148 0 10 chr12 20524104 20524394 -123262061 + AluSx SINE Alu 1 287 -25 23 54 0 0 chr12 20525110 20525147 -123261308 + AT_rich Low_complexity Low_complexity 1 37 0 208 250 0 0 chr12 20525414 20525470 -123260985 + A-rich Low_complexity Low_complexity 1 56 0 522 290 20 20 chr12 20525631 20525871 -123260584 + L1MC/D LINE L1 5286 5524 -707 215 245 0 0 chr12 20527586 20527639 -123258816 + T-rich Low_complexity Low_complexity 1 53 0 2045 133 3 16 chr12 20528112 20528428 -123258027 - AluSx SINE Alu 0 312 1 1946 118 3 43 chr12 20528638 20528943 -123257512 + AluJo SINE Alu 1 293 -19 1943 153 7 0 chr12 20529033 20529328 -123257127 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr12 20529346 20529369 -123257086 + AT_rich Low_complexity Low_complexity 1 23 0 207 100 0 0 chr12 20529519 20529549 -123256906 + (T)n Simple_repeat Simple_repeat 1 30 0 2108 102 3 14 chr12 20530139 20530432 -123256023 + AluSq SINE Alu 1 290 -23 180 0 0 0 chr12 20530435 20530455 -123256000 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2236 94 0 17 chr12 20531787 20532103 -123254352 - AluSx SINE Alu 0 311 1 879 181 114 5 chr12 20532261 20532454 -123254001 + L1PA16 LINE L1 5951 6164 -2 26 82 0 0 chr12 20532648 20532709 -123253746 + AT_rich Low_complexity Low_complexity 1 61 0 623 323 48 36 chr12 20532724 20532975 -123253480 - MIR SINE MIR -1 261 8 202 232 188 14 chr12 20533108 20533177 -123253278 - MIR SINE MIR -39 169 88 598 260 46 40 chr12 20533278 20533451 -123253004 - LTR16A LTR ERVL -14 436 263 190 200 25 0 chr12 20533451 20533491 -123252964 - L2 LINE L2 -5 3267 3227 642 266 92 14 chr12 20533660 20533867 -123252588 - MIR SINE MIR -1 261 39 354 335 65 41 chr12 20534774 20535019 -123251436 - L2 LINE L2 -98 3215 2965 25 0 0 0 chr12 20535513 20535538 -123250917 + AT_rich Low_complexity Low_complexity 1 25 0 417 240 41 16 chr12 20535538 20535659 -123250796 + L1MC4 LINE L1 7784 7907 -135 1380 158 116 0 chr12 20535764 20535866 -123250589 + AluJb SINE Alu 3 92 -220 240 59 0 0 chr12 20535866 20535900 -123250555 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1380 158 116 0 chr12 20535900 20536056 -123250399 + AluJb SINE Alu 92 291 -21 1748 174 0 0 chr12 20536069 20536344 -123250111 + AluSx SINE Alu 5 279 -33 25 0 0 0 chr12 20536344 20536369 -123250086 + AT_rich Low_complexity Low_complexity 1 25 0 2014 123 0 7 chr12 20536939 20537223 -123249232 + AluSx SINE Alu 1 282 -30 2325 82 14 0 chr12 20537245 20537536 -123248919 + AluSp SINE Alu 1 295 -18 2341 102 3 0 chr12 20538671 20538974 -123247481 + AluSx SINE Alu 3 306 -6 25 0 0 0 chr12 20539072 20539097 -123247358 + AT_rich Low_complexity Low_complexity 1 25 0 1846 157 31 0 chr12 20540792 20541085 -123245370 + AluJb SINE Alu 1 302 -10 21 0 0 0 chr12 20541146 20541167 -123245288 + AT_rich Low_complexity Low_complexity 1 21 0 1587 193 7 7 chr12 20542020 20542343 -123244112 + AluJo SINE Alu 1 323 0 1914 141 3 10 chr12 20542468 20542772 -123243683 - AluSx SINE Alu -10 302 1 443 304 24 12 chr12 20543390 20543558 -123242897 - MIR SINE MIR -65 197 28 1563 193 7 14 chr12 20545046 20545342 -123241113 + AluJo SINE Alu 1 294 -18 232 353 146 27 chr12 20545396 20545657 -123240798 - L2 LINE L2 -17 3296 3005 1798 136 0 0 chr12 20545973 20546231 -123240224 + AluSx SINE Alu 2 259 -53 226 319 33 11 chr12 20546240 20546331 -123240124 - L2 LINE L2 -839 2475 2383 700 56 56 0 chr12 20546353 20546460 -123239995 + L1MA8 LINE L1 6169 6281 -10 299 300 27 2 chr12 20546481 20546630 -123239825 + L1P5 LINE L1 5389 5549 -602 27 0 0 0 chr12 20547702 20547729 -123238726 + AT_rich Low_complexity Low_complexity 1 27 0 337 262 154 20 chr12 20548425 20548574 -123237881 + L3 LINE CR1 1064 1232 -345 2083 110 11 0 chr12 20548955 20549237 -123237218 + AluSx SINE Alu 12 296 -16 180 465 30 10 chr12 20549322 20549423 -123237032 - MIR3 SINE MIR -104 104 2 997 113 0 13 chr12 20549600 20549751 -123236704 - AluSg/x SINE Alu 0 312 164 588 129 148 0 chr12 20549874 20549975 -123236480 - FLAM_C SINE Alu -27 116 1 2009 118 70 0 chr12 20550363 20550650 -123235805 - AluSx SINE Alu -5 307 1 972 173 60 0 chr12 20550714 20550882 -123235573 + AluJb SINE Alu 121 298 -14 1810 145 28 3 chr12 20550940 20551230 -123235225 + AluSq SINE Alu 1 297 -16 2155 74 3 3 chr12 20551404 20551720 -123234735 - AluY SINE Alu 0 316 1 22 35 0 0 chr12 20552289 20552318 -123234137 + AT_rich Low_complexity Low_complexity 1 29 0 1308 104 0 6 chr12 20552552 20552812 -123233643 + AluSx SINE Alu 1 308 -4 23 0 0 0 chr12 20552894 20552917 -123233538 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr12 20553510 20553537 -123232918 + AT_rich Low_complexity Low_complexity 1 27 0 2075 127 0 0 chr12 20553693 20554007 -123232448 - AluSx SINE Alu 0 314 1 455 305 86 0 chr12 20554426 20554577 -123231878 + FAM SINE Alu 2 165 -10 5031 191 89 13 chr12 20555110 20556261 -123230194 + Charlie1a DNA MER1_type 1 1239 -216 293 137 0 39 chr12 20556244 20556295 -123230160 + Charlie1a DNA MER1_type 1406 1454 -1 * 2168 120 7 0 chr12 20556323 20556624 -123229831 + AluSx SINE Alu 1 303 -9 1964 123 3 20 chr12 20556648 20556941 -123229514 - AluSx SINE Alu -24 288 1 2495 79 3 0 chr12 20557434 20557739 -123228716 + AluSx SINE Alu 1 306 -6 1882 104 48 11 chr12 20559548 20559866 -123226589 - AluSg SINE Alu 0 330 3 22 35 0 0 chr12 20560844 20560873 -123225582 + AT_rich Low_complexity Low_complexity 1 29 0 1983 141 0 7 chr12 20561761 20562066 -123224389 + AluSx SINE Alu 1 303 -9 202 182 0 0 chr12 20562066 20562099 -123224356 + polypurine Low_complexity Low_complexity 1 33 0 2215 122 0 0 chr12 20562294 20562589 -123223866 + AluSx SINE Alu 1 295 -17 24 53 0 0 chr12 20562615 20562653 -123223802 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr12 20562955 20562978 -123223477 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr12 20563871 20563926 -123222529 + AT_rich Low_complexity Low_complexity 1 55 0 2145 109 0 26 chr12 20565588 20565892 -123220563 + AluSx SINE Alu 1 296 -16 2102 124 3 3 chr12 20565903 20566201 -123220254 + AluSx SINE Alu 1 298 -14 2815 13 0 0 chr12 20566979 20567289 -123219166 + AluYb8 SINE Alu 1 310 -8 26 0 0 0 chr12 20567382 20567408 -123219047 + AT_rich Low_complexity Low_complexity 1 26 0 2032 101 28 3 chr12 20567562 20567848 -123218607 + AluSx SINE Alu 1 293 -19 192 97 0 0 chr12 20568037 20568068 -123218387 + (T)n Simple_repeat Simple_repeat 1 31 0 1572 73 0 0 chr12 20568116 20568307 -123218148 - AluSq SINE Alu -122 191 1 27 0 0 0 chr12 20568356 20568383 -123218072 + AT_rich Low_complexity Low_complexity 1 27 0 280 295 83 26 chr12 20569229 20569385 -123217070 + MIR SINE MIR 86 250 -12 22 56 0 0 chr12 20570043 20570079 -123216376 + AT_rich Low_complexity Low_complexity 1 36 0 2193 86 3 51 chr12 20570491 20570804 -123215651 + AluSp SINE Alu 1 298 -15 1876 130 0 4 chr12 20572066 20572335 -123214120 - AluSx SINE Alu -44 268 1 701 180 180 0 chr12 20572361 20572533 -123213922 - MER3 DNA MER1_type -6 203 1 2083 115 0 0 chr12 20572548 20572826 -123213629 - AluSx SINE Alu 0 312 35 1850 158 3 7 chr12 20573121 20573413 -123213042 + 7SLRNA srpRNA srpRNA 5 295 -25 1904 126 48 3 chr12 20573454 20573747 -123212708 - AluJb SINE Alu -6 306 1 1714 100 71 0 chr12 20573778 20574018 -123212437 + AluSq SINE Alu 1 257 -56 744 154 0 0 chr12 20574451 20574568 -123211887 + AluJb SINE Alu 1 117 -195 2208 103 7 0 chr12 20574919 20575209 -123211246 + AluSg SINE Alu 5 296 -14 2152 116 0 13 chr12 20575209 20575520 -123210935 + AluSp SINE Alu 1 307 -6 1314 106 0 6 chr12 20575545 20575724 -123210731 + AluSg/x SINE Alu 112 289 -21 214 234 0 0 chr12 20576226 20576273 -123210182 + (CGG)n Simple_repeat Simple_repeat 3 49 0 1996 130 3 3 chr12 20576826 20577118 -123209337 + AluSq SINE Alu 1 292 -21 201 276 0 41 chr12 20577562 20577660 -123208795 + A-rich Low_complexity Low_complexity 2 95 0 2097 120 0 46 chr12 20578400 20578725 -123207730 + AluSx SINE Alu 1 310 -2 2138 80 38 3 chr12 20579111 20579400 -123207055 + AluSx SINE Alu 3 301 -11 2254 107 0 0 chr12 20579977 20580267 -123206188 + AluSx SINE Alu 14 303 -9 836 157 64 7 chr12 20580271 20580411 -123206044 + AluJo SINE Alu 1 148 -164 11933 127 42 7 chr12 20580426 20580788 -123205667 - Tigger1 DNA MER2_type -82 2336 1988 1582 165 25 59 chr12 20580788 20581109 -123205346 + AluJo SINE Alu 1 310 -2 11933 127 42 7 chr12 20581109 20582772 -123203683 - Tigger1 DNA MER2_type -430 1988 242 1502 143 5 5 chr12 20582772 20582996 -123203459 + AluJo SINE Alu 44 267 -45 21 0 0 0 chr12 20583074 20583095 -123203360 + AT_rich Low_complexity Low_complexity 1 21 0 307 229 95 24 chr12 20583096 20583227 -123203228 + L1ME2 LINE L1 5992 6134 -28 26 0 0 0 chr12 20583498 20583524 -123202931 + AT_rich Low_complexity Low_complexity 1 26 0 1457 176 70 33 chr12 20586723 20586995 -123199460 + AluJo SINE Alu 1 282 -30 207 0 0 0 chr12 20587560 20587583 -123198872 + (T)n Simple_repeat Simple_repeat 1 23 0 2166 110 14 0 chr12 20588279 20588571 -123197884 + AluSx SINE Alu 1 296 -16 25 75 0 32 chr12 20590081 20590174 -123196281 + AT_rich Low_complexity Low_complexity 1 90 0 1957 153 3 0 chr12 20590523 20590818 -123195637 + AluSx SINE Alu 1 296 -16 1920 138 9 34 chr12 20590990 20591310 -123195145 - AluSx SINE Alu 0 312 1 1544 174 17 51 chr12 20592508 20592801 -123193654 - AluJo SINE Alu -29 283 1 1803 129 76 0 chr12 20592881 20593144 -123193311 + AluSq SINE Alu 3 285 -28 2290 112 7 0 chr12 20593174 20593479 -123192976 + AluSx SINE Alu 1 307 -5 280 301 14 0 chr12 20594100 20594173 -123192282 - MIR SINE MIR -96 112 39 1693 177 32 0 chr12 20594749 20595031 -123191424 + AluJo SINE Alu 2 292 -20 2346 82 0 0 chr12 20595046 20595339 -123191116 + AluSg SINE Alu 1 293 -17 2181 92 7 0 chr12 20595368 20595702 -123190753 + AluSp SINE Alu 4 339 0 199 352 0 0 chr12 20595919 20595973 -123190482 + L2 LINE L2 3211 3264 -8 5221 123 43 18 chr12 20596210 20597270 -123189185 - L1PA16 LINE L1 0 6166 5108 2155 147 0 0 chr12 20597270 20597582 -123188873 - AluSx SINE Alu 0 312 1 7697 200 29 4 chr12 20597591 20598196 -123188259 - L1 LINE L1 -1114 5032 4443 360 0 0 0 chr12 20598196 20598236 -123188219 + (TG)n Simple_repeat Simple_repeat 2 41 0 7697 200 29 4 chr12 20598236 20599429 -123187026 - L1 LINE L1 -1703 4443 3190 1262 169 147 52 chr12 20599437 20599709 -123186746 + AluJb SINE Alu 6 303 -9 25 0 0 0 chr12 20600208 20600233 -123186222 + AT_rich Low_complexity Low_complexity 1 25 0 830 142 0 8 chr12 20601015 20601142 -123185313 - FLAM_C SINE Alu -7 126 1 1339 212 26 11 chr12 20601378 20601647 -123184808 + AluJb SINE Alu 1 273 -39 1639 158 91 0 chr12 20601654 20601919 -123184536 + AluJo SINE Alu 1 289 -23 753 174 0 56 chr12 20602102 20602263 -123184192 - FAM SINE Alu -2 47 1 261 157 182 91 chr12 20602274 20602319 -123184136 - L1ME3A LINE L1 -198 5972 5932 1669 167 51 0 chr12 20602319 20602594 -123183861 - AluJb SINE Alu -23 289 1 261 157 182 91 chr12 20602594 20602669 -123183786 - L1ME3A LINE L1 -238 5932 5841 1997 82 0 0 chr12 20602690 20602935 -123183520 + AluSp SINE Alu 50 294 -19 1854 128 0 44 chr12 20602935 20603233 -123183222 + AluSc SINE Alu 1 285 -24 2207 116 0 7 chr12 20603244 20603547 -123182908 - AluSg SINE Alu -9 301 1 722 155 0 165 chr12 20604339 20604468 -123181987 + AluJb SINE Alu 3 89 -223 360 0 0 0 chr12 20604468 20604508 -123181947 + (TA)n Simple_repeat Simple_repeat 2 41 0 722 155 0 165 chr12 20604508 20604578 -123181877 + AluJb SINE Alu 89 169 -143 180 0 0 0 chr12 20604622 20604642 -123181813 + (A)n Simple_repeat Simple_repeat 1 20 0 1932 136 13 13 chr12 20604662 20604971 -123181484 - AluJo SINE Alu -3 309 1 1752 123 3 58 chr12 20605040 20605333 -123181122 - AluSg SINE Alu 0 310 34 1528 166 0 0 chr12 20605334 20605569 -123180886 - AluSx SINE Alu -76 236 2 296 296 120 32 chr12 20606337 20606462 -123179993 - L3 LINE CR1 -81 1496 1361 1420 64 0 0 chr12 20606615 20606786 -123179669 - AluSp SINE Alu -2 311 141 242 211 44 111 chr12 20606871 20606909 -123179546 + MIR SINE MIR 120 159 -103 2310 109 13 0 chr12 20606909 20607212 -123179243 + AluSx SINE Alu 1 307 -5 242 211 44 111 chr12 20607212 20607263 -123179192 + MIR SINE MIR 159 203 -59 408 59 15 73 chr12 20607378 20607446 -123179009 + AluSp SINE Alu 76 139 -174 1730 100 12 0 chr12 20607447 20607687 -123178768 + AluSq SINE Alu 58 300 -13 431 233 47 47 chr12 20607716 20607845 -123178610 + MER3 DNA MER1_type 38 166 -43 736 182 29 112 chr12 20607850 20607976 -123178479 - AluJo/FRAM SINE Alu -21 291 181 1808 138 46 3 chr12 20607976 20608258 -123178197 + AluSx SINE Alu 1 294 -18 736 182 29 112 chr12 20608258 20608301 -123178154 - AluJo/FRAM SINE Alu -131 181 136 294 130 22 0 chr12 20608303 20608349 -123178106 + MER3 DNA MER1_type 157 203 -6 1006 133 7 0 chr12 20608393 20608543 -123177912 + AluSg/x SINE Alu 154 304 -8 231 91 61 0 chr12 20608607 20608640 -123177815 - MER58 DNA MER1_type -1 2419 2385 2266 110 0 16 chr12 20608661 20608979 -123177476 - AluSq SINE Alu 0 313 1 363 289 69 47 chr12 20609128 20609360 -123177095 + L1 LINE L1 4488 4724 -1422 475 261 62 12 chr12 20609387 20609548 -123176907 + MIR SINE MIR 89 257 -5 275 147 200 0 chr12 20609563 20609638 -123176817 + L1 LINE L1 4736 4825 -1321 5436 30 9 20 chr12 20609963 20610602 -123175853 + SVA Other Other 755 1386 0 1877 160 3 19 chr12 20610626 20610938 -123175517 + AluSx SINE Alu 1 307 -5 232 282 35 12 chr12 20610940 20611025 -123175430 + L1ME LINE L1 5390 5476 -645 1750 180 3 3 chr12 20611371 20611666 -123174789 - AluJb SINE Alu -17 295 1 1933 101 4 0 chr12 20612008 20612256 -123174199 + AluSx SINE Alu 1 249 -63 1025 136 51 11 chr12 20612256 20612433 -123174022 + AluSg/x SINE Alu 122 305 -7 24 0 0 0 chr12 20612872 20612896 -123173559 + AT_rich Low_complexity Low_complexity 1 24 0 1664 129 39 126 chr12 20613112 20613404 -123173051 - MER7A DNA MER2_type -2692 346 95 2096 125 10 0 chr12 20613404 20613700 -123172755 + AluSx SINE Alu 1 299 -13 1664 129 39 126 chr12 20613700 20613788 -123172667 - MER7A DNA MER2_type -2943 95 1 430 290 88 59 chr12 20614017 20614358 -123172097 - L1ME4a LINE L1 -269 5852 5502 1701 115 59 48 chr12 20614460 20614730 -123171725 + AluSx SINE Alu 1 273 -39 215 91 0 23 chr12 20614740 20614751 -123171704 + (TAAAAA)n Simple_repeat Simple_repeat 4 14 -32 2388 97 0 0 chr12 20614751 20615061 -123171394 + AluSx SINE Alu 1 310 -2 215 91 0 23 chr12 20615061 20615093 -123171362 + (TAAAAA)n Simple_repeat Simple_repeat 14 46 0 2109 118 10 3 chr12 20615115 20615411 -123171044 + AluSx SINE Alu 1 298 -14 23 33 0 0 chr12 20615602 20615632 -123170823 + AT_rich Low_complexity Low_complexity 1 30 0 1576 131 71 19 chr12 20615991 20616259 -123170196 + AluJo SINE Alu 1 282 -30 38 0 0 0 chr12 20617001 20617039 -123169416 + AT_rich Low_complexity Low_complexity 1 38 0 2234 122 3 0 chr12 20617512 20617816 -123168639 - AluSx SINE Alu -7 305 1 184 151 38 75 chr12 20617969 20618022 -123168433 + MER5C DNA MER1_type 90 140 -184 432 262 90 0 chr12 20618257 20618402 -123168053 - MER46C DNA MER2_type -8 330 173 1221 117 6 6 chr12 20618431 20618611 -123167844 + AluSg/x SINE Alu 119 298 -14 1463 212 19 19 chr12 20618686 20619047 -123167408 - AluJb SINE Alu 0 312 3 573 92 0 0 chr12 20619259 20619335 -123167120 + AluSx SINE Alu 2 77 -236 231 36 0 0 chr12 20619337 20619365 -123167090 + (CAA)n Simple_repeat Simple_repeat 1 28 0 441 58 0 0 chr12 20619411 20619463 -123166992 + AluSx SINE Alu 82 133 -177 2087 123 0 3 chr12 20619464 20619756 -123166699 + AluSg SINE Alu 1 291 -19 240 249 269 20 chr12 20619824 20620021 -123166434 + L1MC4 LINE L1 7706 7951 -91 2042 104 26 23 chr12 20620118 20620427 -123166028 + AluSg SINE Alu 1 310 0 1778 132 86 4 chr12 20620589 20620869 -123165586 - AluJb SINE Alu -9 303 1 809 161 0 0 chr12 20620888 20621006 -123165449 + FLAM_C SINE Alu 1 118 -25 342 197 15 15 chr12 20621213 20621279 -123165176 + AluJb SINE Alu 213 278 -24 2082 102 3 14 chr12 20621463 20621748 -123164707 + AluSp SINE Alu 23 304 -9 1815 166 10 13 chr12 20621752 20622053 -123164402 + AluJb SINE Alu 1 300 -12 827 129 38 30 chr12 20622234 20622366 -123164089 - FLAM_C SINE Alu 0 133 1 1519 157 43 47 chr12 20622426 20622725 -123163730 - AluJb SINE Alu 0 312 15 2049 126 3 10 chr12 20622788 20623108 -123163347 - AluSx SINE Alu 0 312 1 2224 88 10 3 chr12 20623114 20623410 -123163045 - AluSp SINE Alu -15 298 1 2689 26 0 7 chr12 20623792 20624100 -123162355 - AluY SINE Alu -1 310 5 2417 68 0 7 chr12 20624137 20624433 -123162022 - AluY SINE Alu -17 294 1 1221 166 0 39 chr12 20624997 20625226 -123161229 - AluJo SINE Alu -8 304 85 2131 128 0 13 chr12 20625530 20625835 -123160620 + AluSx SINE Alu 1 301 -11 1668 182 19 16 chr12 20625884 20626192 -123160263 + AluJo SINE Alu 1 309 -3 619 159 37 9 chr12 20626198 20626305 -123160150 - Tigger2 DNA MER2_type -228 2490 2381 2304 89 20 0 chr12 20626308 20626610 -123159845 - AluSg SINE Alu -2 308 1 1971 129 41 7 chr12 20626903 20627197 -123159258 - AluSx SINE Alu -8 304 1 261 0 0 0 chr12 20627270 20627299 -123159156 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1755 134 0 39 chr12 20627307 20627591 -123158864 - AluJb SINE Alu -39 273 1 2464 58 0 22 chr12 20629332 20629644 -123156811 + AluY SINE Alu 1 305 -6 1271 149 50 14 chr12 20629700 20629921 -123156534 + AluJb SINE Alu 1 229 -83 1642 171 10 20 chr12 20629978 20630270 -123156185 + AluJo SINE Alu 4 292 -20 23 33 0 0 chr12 20630295 20630325 -123156130 + AT_rich Low_complexity Low_complexity 1 30 0 2063 105 11 21 chr12 20632398 20632683 -123153772 - AluSx SINE Alu -30 282 1 22 70 0 0 chr12 20633044 20633087 -123153368 + AT_rich Low_complexity Low_complexity 1 43 0 535 195 26 45 chr12 20633640 20633794 -123152661 - AluSg/x SINE Alu 0 312 162 2424 78 0 3 chr12 20634509 20634815 -123151640 + AluY SINE Alu 1 305 -6 515 329 0 22 chr12 20635264 20635401 -123151054 + MIR3 SINE MIR 11 144 -64 1610 249 133 53 chr12 20636354 20636515 -123149940 + L1M4c LINE L1 892 1039 -5345 2064 133 0 7 chr12 20636515 20636809 -123149646 - AluJo SINE Alu -18 294 3 1610 249 133 53 chr12 20636809 20637503 -123148952 + L1M4c LINE L1 1039 1816 -4568 477 219 123 0 chr12 20637619 20637733 -123148722 - MER58A DNA MER1_type 0 128 1 466 319 156 27 chr12 20637768 20638173 -123148282 - L3 LINE CR1 -477 1100 644 613 133 0 51 chr12 20638223 20638321 -123148134 + AluJ/FLAM SINE Alu 3 95 -217 1901 100 65 7 chr12 20638330 20638620 -123147835 - AluSx SINE Alu -1 311 5 1902 136 40 31 chr12 20638622 20638945 -123147510 - THE1B LTR MaLR -38 326 1 757 271 78 18 chr12 20639041 20639322 -123147133 + MLT1C LTR MaLR 168 465 -2 188 278 175 0 chr12 20639340 20639437 -123147018 - L2 LINE L2 -209 3104 2991 706 144 117 0 chr12 20640145 20640256 -123146199 + FLAM_A SINE Alu 4 127 -6 524 157 8 104 chr12 20640552 20640686 -123145769 + L2 LINE L2 3191 3311 -2 21 0 0 0 chr12 20640762 20640783 -123145672 + AT_rich Low_complexity Low_complexity 1 21 0 189 279 22 0 chr12 20641011 20641078 -123145377 - MIR SINE MIR -102 106 38 1898 152 14 0 chr12 20642352 20642648 -123143807 - AluJo SINE Alu -8 304 5 1592 156 17 21 chr12 20643411 20643699 -123142756 - MER1B DNA MER1_type -18 321 35 844 181 110 16 chr12 20643714 20643896 -123142559 - MER7A DNA MER2_type -149 197 1 193 354 0 0 chr12 20643906 20643954 -123142501 + L2 LINE L2 3210 3257 -15 2273 107 0 0 chr12 20644292 20644592 -123141863 + AluSq SINE Alu 6 305 -8 778 116 126 0 chr12 20645050 20645240 -123141215 + AluY SINE Alu 79 292 -19 424 293 89 19 chr12 20645917 20646187 -123140268 - L1MC4a LINE L1 -1871 5937 5649 301 234 70 63 chr12 20646223 20646307 -123140148 - L1MC4a LINE L1 -709 5461 5374 2189 125 3 0 chr12 20646307 20646612 -123139843 - AluSq SINE Alu -7 306 1 301 234 70 63 chr12 20646612 20646685 -123139770 - L1MC4a LINE L1 -796 5374 5303 467 116 0 109 chr12 20648817 20648955 -123137500 - AluSc SINE Alu -52 257 135 2135 112 34 0 chr12 20648959 20649254 -123137201 - AluSq SINE Alu -8 305 1 980 133 7 0 chr12 20649254 20649405 -123137050 - L1MC1 LINE L1 -162 6171 6020 2029 86 0 15 chr12 20649420 20649688 -123136767 + AluSq SINE Alu 35 298 -15 1275 230 14 0 chr12 20649688 20649984 -123136471 - L1MC4a LINE L1 -991 5155 4856 1208 213 32 29 chr12 20650015 20650292 -123136163 + AluJo SINE Alu 5 282 -30 2082 103 47 20 chr12 20650292 20650593 -123135862 - AluSg SINE Alu -1 309 1 531 271 16 0 chr12 20650599 20650728 -123135727 - FLAM_C SINE Alu -2 131 1 1051 128 0 0 chr12 20651395 20651577 -123134878 + AluSg/x SINE Alu 135 316 0 1104 53 0 0 chr12 20652097 20652228 -123134227 - AluY SINE Alu -12 299 169 1457 134 119 15 chr12 20652411 20652680 -123133775 - AluSg1 SINE Alu -12 297 1 2225 100 37 0 chr12 20652750 20653049 -123133406 - AluSx SINE Alu -2 310 1 2155 80 7 31 chr12 20653062 20653380 -123133075 - AluY SINE Alu 0 311 1 53 30 0 0 chr12 20653563 20653630 -123132825 + AT_rich Low_complexity Low_complexity 1 67 0 1425 181 19 37 chr12 20653703 20653973 -123132482 + AluJo SINE Alu 1 265 -47 850 208 6 51 chr12 20654159 20654337 -123132118 - AluJb SINE Alu -24 288 119 755 78 8 23 chr12 20654370 20654498 -123131957 + (TTC)n Simple_repeat Simple_repeat 2 127 0 836 144 8 0 chr12 20654505 20654637 -123131818 - FLAM_C SINE Alu -2 141 9 2657 203 133 25 chr12 20654646 20655317 -123131138 + MER21B LTR ERV1 85 827 -36 240 234 16 16 chr12 20655330 20655394 -123131061 - MLT1J2 LTR MaLR -315 135 72 227 191 21 0 chr12 20655654 20655701 -123130754 + Looper DNA T2_type 874 921 -637 2464 56 0 16 chr12 20656394 20656698 -123129757 - AluY SINE Alu -12 299 1 868 195 16 5 chr12 20657211 20657396 -123129059 - AluSg/x SINE Alu -1 311 125 2063 122 3 7 chr12 20657534 20657829 -123128626 - AluSq SINE Alu -19 294 1 320 231 103 79 chr12 20657897 20658100 -123128355 + MLT1J LTR MaLR 238 445 -66 1720 146 11 7 chr12 20658103 20658383 -123128072 - AluJb SINE Alu -10 302 22 517 86 0 0 chr12 20658383 20658453 -123128002 + AluSp/q SINE Alu 233 302 -11 1799 178 111 111 chr12 20658705 20658959 -123127496 - MLT2B2 LTR ERVL -8 507 254 1981 120 27 20 chr12 20658959 20659260 -123127195 - AluSx SINE Alu -9 303 1 1799 178 111 111 chr12 20659260 20659437 -123127018 - MLT2B2 LTR ERVL -261 254 73 2191 97 30 0 chr12 20659437 20659735 -123126720 - AluSx SINE Alu -5 307 1 1799 178 111 111 chr12 20659735 20659809 -123126646 - MLT2B2 LTR ERVL -441 74 1 2110 128 7 0 chr12 20660122 20660419 -123126036 + AluJb SINE Alu 1 299 -13 1984 123 10 32 chr12 20660562 20660872 -123125583 - AluSx SINE Alu -9 303 1 473 81 0 0 chr12 20660885 20660947 -123125508 - Alu SINE Alu -255 63 2 494 182 88 54 chr12 20661177 20661325 -123125130 + MLT1J LTR MaLR 318 470 -41 2111 139 0 3 chr12 20661328 20661631 -123124824 - AluSx SINE Alu -10 302 1 2245 67 3 3 chr12 20661783 20662099 -123124356 - AluY SINE Alu 0 316 1 600 274 12 75 chr12 20662369 20662505 -123123950 + MIR SINE MIR 15 158 -104 1927 158 20 10 chr12 20662505 20662808 -123123647 + AluJo SINE Alu 1 306 -6 600 274 12 75 chr12 20662808 20662868 -123123587 + MIR SINE MIR 158 194 -68 2212 134 0 0 chr12 20662868 20663175 -123123280 + AluSx SINE Alu 1 307 -5 600 274 12 75 chr12 20663175 20663229 -123123226 + MIR SINE MIR 194 250 -12 981 136 0 73 chr12 20663242 20663419 -123123036 + AluJb SINE Alu 149 312 0 272 150 0 0 chr12 20663506 20663546 -123122909 - MER2 DNA MER2_type 0 345 306 434 205 0 13 chr12 20663561 20663639 -123122816 - MER2 DNA MER2_type -247 98 22 1999 96 3 99 chr12 20663739 20664083 -123122372 - AluY SINE Alu 0 311 1 2407 101 0 0 chr12 20664110 20664408 -123122047 - AluSx SINE Alu -14 298 1 489 156 117 83 chr12 20664609 20664814 -123121641 + L1MC5 LINE L1 6921 7132 -829 1930 149 0 10 chr12 20664842 20665137 -123121318 + AluSx SINE Alu 1 292 -20 481 231 63 32 chr12 20665420 20665641 -123120814 + AluY SINE Alu 68 295 -16 348 202 91 0 chr12 20665817 20665916 -123120539 + L1MC5 LINE L1 7539 7646 -315 2211 91 3 7 chr12 20666640 20666936 -123119519 + AluSg1 SINE Alu 1 295 -14 1376 166 147 4 chr12 20667254 20667375 -123119080 + AluJb SINE Alu 2 104 -208 9396 41 3 2 chr12 20667375 20669288 -123117167 - L1PA4 LINE L1 -1 6154 4241 1376 166 147 4 chr12 20669288 20669431 -123117024 + AluJb SINE Alu 104 304 -8 1896 170 0 0 chr12 20670810 20671099 -123115356 + AluJb SINE Alu 1 289 -23 1898 161 0 7 chr12 20671502 20671801 -123114654 + AluSx SINE Alu 1 297 -15 533 108 0 0 chr12 20671910 20671984 -123114471 - AluS SINE Alu -237 75 2 2032 117 10 7 chr12 20672025 20672323 -123114132 + AluSx SINE Alu 1 299 -13 2257 82 3 3 chr12 20673004 20673295 -123113160 - AluSx SINE Alu -21 291 1 273 279 117 56 chr12 20673368 20673547 -123112908 + MIR SINE MIR 61 250 -12 1492 83 10 5 chr12 20675386 20675579 -123110876 + AluSp SINE Alu 98 291 -22 2041 157 0 0 chr12 20675789 20676113 -123110342 - AluSx SINE Alu 0 312 1 601 164 0 29 chr12 20676201 20676305 -123110150 + AluSq/x SINE Alu 26 126 -186 1178 184 56 16 chr12 20677465 20677715 -123108740 - AluJo SINE Alu -1 311 52 1876 139 26 35 chr12 20677775 20678085 -123108370 - AluJb SINE Alu -5 307 1 4710 101 24 24 chr12 20678106 20678780 -123107675 - L1PB2 LINE L1 -1 6150 5474 2219 83 31 0 chr12 20678780 20679068 -123107387 - AluSc SINE Alu -12 297 1 4710 101 24 24 chr12 20679068 20679113 -123107342 - L1PB2 LINE L1 -676 5475 5431 744 155 0 62 chr12 20679117 20679278 -123107177 - L1PB2 LINE L1 -787 5359 5209 1773 167 26 7 chr12 20679540 20679846 -123106609 - AluJb SINE Alu 0 312 1 2075 112 0 4 chr12 20679900 20680176 -123106279 + AluSx SINE Alu 25 299 -13 2165 90 38 0 chr12 20680177 20680465 -123105990 + AluSp SINE Alu 3 301 -12 604 98 19 2 chr12 20681034 20681130 -123105325 - LTR17 LTR ERV1 -354 360 247 2264 95 0 3 chr12 20681159 20681453 -123105002 + AluSc SINE Alu 1 293 -16 2112 115 3 3 chr12 20681453 20681740 -123104715 + AluSx SINE Alu 1 287 -25 2100 134 7 0 chr12 20681822 20682114 -123104341 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr12 20682645 20682666 -123103789 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 20682769 20682798 -123103657 + AT_rich Low_complexity Low_complexity 1 29 0 280 307 80 29 chr12 20683276 20683413 -123103042 - MIR3 SINE MIR -27 181 38 1837 124 17 44 chr12 20684148 20684340 -123102115 - AluSg SINE Alu 0 300 138 1984 98 40 11 chr12 20684340 20684494 -123101961 - AluSc SINE Alu -24 285 118 2484 77 0 3 chr12 20684494 20684804 -123101651 - AluY SINE Alu -2 309 1 1984 98 40 11 chr12 20684804 20684926 -123101529 - AluSc SINE Alu -191 118 1 1837 124 17 44 chr12 20684926 20685061 -123101394 - AluSg SINE Alu -162 138 1 2051 122 31 0 chr12 20685280 20685566 -123100889 + AluSx SINE Alu 4 298 -14 568 170 21 112 chr12 20685982 20686024 -123100431 - Charlie2 DNA MER1_type -13 2849 2805 1855 176 0 13 chr12 20686024 20686330 -123100125 + AluJb SINE Alu 1 302 -10 568 170 21 112 chr12 20686330 20686402 -123100053 - Charlie2 DNA MER1_type -57 2805 2728 2186 129 3 0 chr12 20686402 20686711 -123099744 + AluSq SINE Alu 1 310 -3 568 170 21 112 chr12 20686711 20686746 -123099709 - Charlie2 DNA MER1_type -134 2728 2717 2082 139 0 3 chr12 20686746 20687047 -123099408 - AluSx SINE Alu -12 300 1 568 170 21 112 chr12 20687047 20687083 -123099372 - Charlie2 DNA MER1_type -145 2717 2679 2077 126 0 7 chr12 20687083 20687391 -123099064 - AluSq SINE Alu 0 306 1 2102 95 74 0 chr12 20687767 20688050 -123098405 + AluSp SINE Alu 1 304 -9 1739 152 29 0 chr12 20688263 20688559 -123097896 - AluJb SINE Alu 0 304 1 23 54 0 0 chr12 20688792 20688829 -123097626 + AT_rich Low_complexity Low_complexity 1 37 0 504 293 60 28 chr12 20689220 20689357 -123097098 + MIR SINE MIR 6 156 -106 1687 171 109 50 chr12 20689357 20689761 -123096694 - MSTC LTR MaLR 0 428 1 504 293 60 28 chr12 20689761 20689872 -123096583 + MIR SINE MIR 156 262 0 23 33 0 0 chr12 20689951 20689981 -123096474 + AT_rich Low_complexity Low_complexity 1 30 0 2568 35 0 0 chr12 20690157 20690446 -123096009 + AluY SINE Alu 1 289 -22 734 252 129 31 chr12 20690969 20691255 -123095200 + L1MC/D LINE L1 5344 5657 -2151 1586 109 154 16 chr12 20691335 20691619 -123094836 + AluJb SINE Alu 4 321 0 1639 97 0 9 chr12 20692000 20692216 -123094239 + AluSp SINE Alu 85 298 -15 1953 99 74 14 chr12 20692424 20692707 -123093748 + AluSx SINE Alu 1 300 -12 2163 106 0 20 chr12 20692769 20693108 -123093347 + AluSg SINE Alu 1 310 0 245 174 0 0 chr12 20694804 20694850 -123091605 + L2 LINE L2 3267 3312 -1 500 200 44 15 chr12 20695658 20695793 -123090662 + MIR SINE MIR 124 262 0 330 281 170 0 chr12 20696166 20696319 -123090136 + MER91A DNA MER1_type 18 196 0 2254 113 0 13 chr12 20696410 20696721 -123089734 - AluSc SINE Alu -2 307 1 183 42 0 0 chr12 20696729 20696753 -123089702 + (TTA)n Simple_repeat Simple_repeat 1 24 0 701 147 0 0 chr12 20696754 20696856 -123089599 - FLAM_C SINE Alu -20 123 22 883 98 8 0 chr12 20696867 20696999 -123089456 - MER41B LTR ERV1 0 635 503 3375 74 7 35 chr12 20697725 20698027 -123088428 - MER41A LTR ERV1 -106 448 162 2210 114 7 0 chr12 20698027 20698333 -123088122 - AluSg SINE Alu -2 308 1 3375 74 7 35 chr12 20698333 20698491 -123087964 - MER41A LTR ERV1 -392 162 1 640 241 76 0 chr12 20698623 20698781 -123087674 + MER96 DNA MER1_type 2 171 -4 1736 139 0 0 chr12 20698840 20699078 -123087377 + AluSx SINE Alu 59 296 -16 1790 151 30 26 chr12 20699177 20699481 -123086974 + AluSx SINE Alu 1 305 -7 639 0 0 0 chr12 20699800 20699871 -123086584 + (CAATA)n Simple_repeat Simple_repeat 1 71 0 1606 193 25 0 chr12 20700061 20700335 -123086120 + AluJb SINE Alu 1 281 -31 192 40 0 0 chr12 20700339 20700364 -123086091 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1748 90 5 0 chr12 20700555 20700778 -123085677 - AluSq SINE Alu -8 305 82 829 134 0 0 chr12 20700778 20700897 -123085558 - AluSx SINE Alu -12 300 182 717 148 0 0 chr12 20700897 20701005 -123085450 - AluSx SINE Alu -203 109 2 2204 123 0 3 chr12 20701017 20701325 -123085130 - AluY SINE Alu -4 307 1 2216 111 0 3 chr12 20701564 20701861 -123084594 - AluSx SINE Alu -16 296 1 2168 110 3 3 chr12 20701863 20702155 -123084300 - AluSc SINE Alu -17 292 1 2564 160 10 53 chr12 20702157 20702378 -123084077 + MER4E LTR ERV1 268 497 -282 1717 186 0 19 chr12 20702378 20702685 -123083770 - AluJb SINE Alu -11 301 1 2564 160 10 53 chr12 20702685 20702968 -123083487 + MER4E LTR ERV1 497 750 -29 576 93 0 0 chr12 20702977 20703052 -123083403 + AluJb SINE Alu 192 266 -46 2304 75 7 13 chr12 20703462 20703767 -123082688 + AluSc SINE Alu 1 303 -6 2115 111 0 0 chr12 20703802 20704082 -123082373 + AluSx SINE Alu 1 280 -32 2322 90 0 17 chr12 20704176 20704477 -123081978 - AluSq SINE Alu -11 302 7 2083 122 24 0 chr12 20704483 20704779 -123081676 - AluSg SINE Alu -7 303 1 189 346 110 8 chr12 20704835 20704962 -123081493 + L2 LINE L2 994 1133 -2181 2092 145 3 3 chr12 20705217 20705528 -123080927 + AluSx SINE Alu 1 311 -1 1081 224 127 0 chr12 20705553 20705798 -123080657 + AluSx SINE Alu 30 305 -7 1897 128 23 0 chr12 20706026 20706291 -123080164 + AluSg SINE Alu 6 276 -34 1317 112 0 0 chr12 20706654 20706824 -123079631 - AluSq SINE Alu -18 295 126 2461 89 0 3 chr12 20706934 20707247 -123079208 + AluSx SINE Alu 1 312 0 216 111 0 0 chr12 20707459 20707495 -123078960 + (CCG)n Simple_repeat Simple_repeat 1 36 0 240 186 0 0 chr12 20707523 20707566 -123078889 + CT-rich Low_complexity Low_complexity 2 44 0 195 69 0 0 chr12 20707680 20707709 -123078746 + (TCC)n Simple_repeat Simple_repeat 1 29 0 230 153 17 0 chr12 20707935 20707994 -123078461 + C-rich Low_complexity Low_complexity 3 62 0 237 258 43 21 chr12 20708362 20708455 -123078000 - Charlie2 DNA MER1_type -4 2858 2764 2269 170 165 39 chr12 20708485 20709208 -123077247 - Charlie2 DNA MER1_type -185 2677 1864 753 248 28 64 chr12 20709213 20709495 -123076960 - Charlie2 DNA MER1_type -2554 308 37 1064 186 145 9 chr12 20709728 20709949 -123076506 + AluSg SINE Alu 1 251 -59 1954 137 102 75 chr12 20709949 20710470 -123075985 - MER39 LTR ERV1 -21 686 181 1718 152 18 79 chr12 20710470 20710800 -123075655 + AluJb SINE Alu 1 310 -2 1954 137 102 75 chr12 20710800 20710817 -123075638 - MER39 LTR ERV1 -526 181 166 4163 130 13 3 chr12 20710817 20711446 -123075009 - MER41B LTR ERV1 0 635 1 1954 137 102 75 chr12 20711446 20711504 -123074951 - MER39 LTR ERV1 -541 166 1 230 152 0 0 chr12 20711508 20711541 -123074914 - L2 LINE L2 -36 3236 3204 1341 152 171 12 chr12 20711834 20712091 -123074364 + AluSc SINE Alu 1 298 -1 792 142 122 14 chr12 20712091 20712239 -123074216 + AluJb SINE Alu 134 297 -15 377 318 14 34 chr12 20712746 20712894 -123073561 + MER5C DNA MER1_type 11 155 -169 2395 91 3 0 chr12 20712899 20713196 -123073259 + AluSp SINE Alu 1 298 -15 2496 58 0 0 chr12 20713227 20713522 -123072933 + AluY SINE Alu 1 295 -16 2207 100 0 0 chr12 20713532 20713811 -123072644 + AluSq SINE Alu 2 280 -33 285 29 0 0 chr12 20713811 20713845 -123072610 + (CA)n Simple_repeat Simple_repeat 1 34 0 1187 183 13 22 chr12 20713908 20714132 -123072323 - AluJb SINE Alu -6 306 85 279 238 100 0 chr12 20714140 20714220 -123072235 + LTR33 LTR ERVL 8 95 -426 2110 192 38 38 chr12 20714222 20714496 -123071959 - Charlie1b DNA MER1_type -2240 521 245 897 104 0 22 chr12 20714496 20714631 -123071824 - FLAM_C SINE Alu 0 133 2 2110 192 38 38 chr12 20714631 20714877 -123071578 - Charlie1b DNA MER1_type -2515 246 1 2344 68 0 0 chr12 20714947 20715226 -123071229 + AluY SINE Alu 27 305 -6 233 258 65 0 chr12 20715347 20715409 -123071046 + LTR33 LTR ERVL 303 368 -153 760 241 24 12 chr12 20715549 20715719 -123070736 + MER5A DNA MER1_type 9 180 -9 2424 84 3 0 chr12 20715723 20716020 -123070435 - AluSp SINE Alu -15 298 1 1407 178 4 32 chr12 20716031 20716284 -123070171 - AluJo SINE Alu -21 291 46 1926 124 0 11 chr12 20716301 20716575 -123069880 - AluY SINE Alu -38 273 3 2414 103 3 0 chr12 20716581 20716893 -123069562 - AluSp SINE Alu 0 313 1 343 307 34 80 chr12 20716939 20717115 -123069340 + L1ME3A LINE L1 5761 5928 -242 353 127 0 0 chr12 20717250 20717305 -123069150 + Alu SINE Alu 1 55 -247 293 185 15 0 chr12 20717329 20717394 -123069061 + GA-rich Low_complexity Low_complexity 2 67 0 1328 148 21 100 chr12 20717402 20717741 -123068714 + L1MB5 LINE L1 5860 6171 -3 2219 129 0 0 chr12 20717837 20718147 -123068308 + AluSx SINE Alu 1 310 -2 28 0 0 0 chr12 20718163 20718191 -123068264 + AT_rich Low_complexity Low_complexity 1 28 0 2472 63 0 10 chr12 20718191 20718492 -123067963 + AluY SINE Alu 1 298 -13 183 304 101 0 chr12 20718581 20718660 -123067795 + L2 LINE L2 2972 3058 -214 216 226 194 0 chr12 20718758 20718820 -123067635 + L2 LINE L2 3194 3267 -5 857 196 6 18 chr12 20718925 20719093 -123067362 + FRAM SINE Alu 1 166 0 2369 108 0 0 chr12 20719148 20719455 -123067000 - AluSg SINE Alu -3 307 1 2110 128 0 3 chr12 20719837 20720142 -123066313 + AluSx SINE Alu 1 304 0 727 193 0 57 chr12 20720286 20720426 -123066029 + FLAM_C SINE Alu 2 133 0 2327 87 0 10 chr12 20720441 20720740 -123065715 + AluSc SINE Alu 1 296 -13 526 254 18 0 chr12 20720792 20720906 -123065549 - FLAM_C SINE Alu -25 118 3 1866 130 56 18 chr12 20720939 20721058 -123065397 + AluSq SINE Alu 1 114 -199 2226 93 4 0 chr12 20721058 20721373 -123065082 + AluSp SINE Alu 2 317 0 1866 130 56 18 chr12 20721373 20721537 -123064918 + AluSq SINE Alu 114 296 -17 1045 179 0 0 chr12 20721541 20721714 -123064741 + FRAM SINE Alu 1 167 -9 1555 152 35 48 chr12 20722046 20722173 -123064282 + AluSx SINE Alu 16 143 -169 243 0 0 0 chr12 20722173 20722200 -123064255 + (TG)n Simple_repeat Simple_repeat 2 28 0 231 36 0 0 chr12 20722199 20722227 -123064228 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 1555 152 35 48 chr12 20722200 20722388 -123064067 + AluSx SINE Alu 143 300 -12 1515 194 0 38 chr12 20722454 20722768 -123063687 + AluJo SINE Alu 1 302 -10 2405 91 7 7 chr12 20723324 20723632 -123062823 - AluSq SINE Alu -5 308 1 315 0 0 0 chr12 20724267 20724302 -123062153 + (TG)n Simple_repeat Simple_repeat 2 36 0 2157 104 0 14 chr12 20724302 20724591 -123061864 - AluSx SINE Alu -27 285 1 2188 109 20 0 chr12 20724593 20724887 -123061568 - AluSg SINE Alu -10 300 1 4957 244 48 30 chr12 20724891 20724916 -123061539 - L1PBa LINE L1 -5212 1651 1628 1201 185 60 63 chr12 20724916 20725247 -123061208 - AluJb SINE Alu 0 302 2 1467 169 0 99 chr12 20725253 20725456 -123060999 - AluJb SINE Alu 0 330 172 2312 113 10 0 chr12 20725456 20725765 -123060690 - AluSx SINE Alu 0 312 1 1467 169 0 99 chr12 20725765 20725922 -123060533 - AluJb SINE Alu -158 172 1 4957 244 48 30 chr12 20725922 20727783 -123058672 - L1PBa LINE L1 -5239 1624 639 2282 66 11 0 chr12 20727783 20728070 -123058385 + AluY SINE Alu 1 290 -21 4957 244 48 30 chr12 20728070 20728720 -123057735 - L1PBa LINE L1 -6224 639 3 2587 123 22 75 chr12 20728733 20729037 -123057418 - LTR39 LTR ERV1 -304 479 160 2036 114 27 7 chr12 20729037 20729335 -123057120 - AluSx SINE Alu -6 306 3 2587 123 22 75 chr12 20729335 20729423 -123057032 - LTR39 LTR ERV1 -623 160 117 2355 91 3 3 chr12 20729423 20729732 -123056723 - AluSc SINE Alu 0 309 1 2587 123 22 75 chr12 20729732 20729844 -123056611 - LTR39 LTR ERV1 -666 117 1 327 138 17 0 chr12 20729846 20729904 -123056551 - L1MC1 LINE L1 -107 6226 6168 4146 60 0 5 chr12 20781523 20782094 -123004361 + L1P3 LINE L1 5254 5821 -351 1346 156 9 130 chr12 20782089 20782513 -123003942 + L1PA12 LINE L1 2699 3064 -4510 * 445 324 242 16 chr12 20783007 20783371 -123003084 + L2 LINE L2 2847 3292 -21 195 42 0 0 chr12 20783379 20783403 -123003052 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 183 80 0 0 chr12 20783984 20784009 -123002446 + (TATG)n Simple_repeat Simple_repeat 4 28 0 22 0 0 0 chr12 20784539 20784561 -123001894 + AT_rich Low_complexity Low_complexity 1 22 0 1615 181 33 26 chr12 20784583 20784886 -123001569 + AluJo SINE Alu 1 305 -7 261 384 15 0 chr12 20785184 20785317 -123001138 + L2 LINE L2 2198 2332 -982 238 148 93 0 chr12 20785317 20785371 -123001084 + L1PB4 LINE L1 6098 6156 0 758 214 9 86 chr12 20785599 20785809 -123000646 + MIR SINE MIR 59 252 -10 2342 92 0 10 chr12 20785811 20786117 -123000338 - AluSg SINE Alu -7 303 1 199 420 35 18 chr12 20786145 20786314 -123000141 + L2 LINE L2 2555 2726 -588 4932 125 59 25 chr12 20787338 20787726 -122998729 - L1MA8 LINE L1 -25 6266 5893 1673 157 88 64 chr12 20787726 20788119 -122998336 + LTR54 LTR ERV1 1 410 -100 2242 87 0 7 chr12 20788119 20788408 -122998047 - AluSc SINE Alu -22 287 1 1673 157 88 64 chr12 20788408 20788512 -122997943 + LTR54 LTR ERV1 410 510 0 4932 125 59 25 chr12 20788512 20789069 -122997386 - L1MA8 LINE L1 -398 5893 5289 29 0 0 0 chr12 20789083 20789112 -122997343 + AT_rich Low_complexity Low_complexity 1 29 0 353 277 54 0 chr12 20791082 20791212 -122995243 + L1ME3A LINE L1 6023 6159 -11 495 342 39 9 chr12 20791440 20791671 -122994784 - MIR SINE MIR -5 257 20 301 208 13 26 chr12 20792731 20792808 -122993647 - L1MC5 LINE L1 -306 7655 7580 2517 126 10 3 chr12 20792810 20793199 -122993256 - L1PA15 LINE L1 -3 6162 5771 5304 106 10 0 chr12 20793214 20794026 -122992429 - L1PB1 LINE L1 -8 6859 6040 394 222 8 8 chr12 20794022 20794139 -122992316 - L1PB1 LINE L1 -1029 5833 5717 * 1086 275 55 15 chr12 20794164 20794687 -122991768 - L1PB1 LINE L1 -6314 549 6 2130 75 14 0 chr12 20794704 20794996 -122991459 - AluY SINE Alu -15 296 1 7885 245 35 47 chr12 20795007 20799512 -122986943 - L1PA12 LINE L1 -2580 5004 1101 7191 197 41 34 chr12 20799512 20801342 -122985113 + L1PA14 LINE L1 3671 5520 -641 1988 155 3 0 chr12 20801342 20801639 -122984816 + AluSx SINE Alu 1 298 -14 7191 197 41 34 chr12 20801639 20802278 -122984177 + L1PA14 LINE L1 5520 6153 -8 7885 245 35 47 chr12 20802278 20803351 -122983104 - L1PA12 LINE L1 -6483 1101 17 6901 195 33 21 chr12 20803346 20806138 -122980317 - L1PA16 LINE L1 -11 6858 4044 * 2559 50 0 0 chr12 20806144 20806443 -122980012 - AluY SINE Alu -12 299 1 3522 118 0 27 chr12 20806443 20807043 -122979412 - L1PA16 LINE L1 -3984 2865 2282 288 239 45 0 chr12 20807066 20807221 -122979234 + (TTATA)n Simple_repeat Simple_repeat 2 163 0 84 92 0 6 chr12 20807247 20807561 -122978894 + AT_rich Low_complexity Low_complexity 1 45 0 270 267 53 15 chr12 20807618 20807749 -122978706 - L1ME LINE L1 -393 5728 5593 29 0 0 0 chr12 20807851 20807880 -122978575 + AT_rich Low_complexity Low_complexity 1 29 0 1752 175 7 26 chr12 20808529 20808837 -122977618 - AluJo SINE Alu -8 304 3 233 310 120 0 chr12 20808906 20809006 -122977449 + MIR SINE MIR 148 259 -3 272 281 89 0 chr12 20809313 20809448 -122977007 + L1ME3A LINE L1 4143 4289 -1857 1137 296 104 7 chr12 20809468 20810469 -122975986 + L1ME3A LINE L1 4620 5724 -446 331 286 0 0 chr12 20810475 20810566 -122975889 + L1MC4 LINE L1 6613 6703 -1339 359 162 27 0 chr12 20810566 20810640 -122975815 + (TATG)n Simple_repeat Simple_repeat 2 77 0 222 37 0 0 chr12 20810640 20810667 -122975788 + (CA)n Simple_repeat Simple_repeat 2 28 0 1406 234 40 40 chr12 20810668 20811143 -122975312 + L1ME3A LINE L1 5691 6165 -5 666 268 86 71 chr12 20811194 20811926 -122974529 + L1ME3A LINE L1 4381 5123 -1023 262 268 26 8 chr12 20812048 20812176 -122974279 + L1ME3A LINE L1 5293 5422 -740 413 294 53 0 chr12 20812212 20812382 -122974073 + L1ME3A LINE L1 5771 5949 -221 22 0 0 0 chr12 20813407 20813429 -122973026 + AT_rich Low_complexity Low_complexity 1 22 0 2284 158 59 2 chr12 20813945 20814351 -122972104 - MSTB1 LTR MaLR 0 432 4 279 54 0 0 chr12 20814557 20814594 -122971861 + (TG)n Simple_repeat Simple_repeat 2 38 0 2130 108 3 23 chr12 20814946 20815251 -122971204 - AluSx SINE Alu -13 299 1 407 324 125 0 chr12 20815552 20815728 -122970727 + MIR SINE MIR 57 254 -8 21 36 0 0 chr12 20815798 20815826 -122970629 + AT_rich Low_complexity Low_complexity 1 28 0 2411 54 10 3 chr12 20815929 20816227 -122970228 + AluY SINE Alu 1 300 -11 299 136 23 0 chr12 20816426 20816470 -122969985 - Tigger5 DNA MER2_type 0 2323 2279 2400 32 4 4 chr12 20816522 20816837 -122969618 - AluY SINE Alu 0 315 1 2553 43 3 3 chr12 20817087 20817392 -122969063 + AluY SINE Alu 1 305 -6 289 271 49 57 chr12 20817585 20817708 -122968747 - MIR SINE MIR -60 148 28 2324 59 29 10 chr12 20817796 20818102 -122968353 + AluSq SINE Alu 1 312 -1 309 340 59 13 chr12 20819310 20819463 -122966992 - L3b LINE CR1 -80 1503 1344 22 0 0 0 chr12 20819651 20819673 -122966782 + AT_rich Low_complexity Low_complexity 1 22 0 476 288 84 77 chr12 20820095 20820380 -122966075 + L2 LINE L2 2175 2461 -853 234 91 0 0 chr12 20820524 20820557 -122965898 + (TA)n Simple_repeat Simple_repeat 1 33 0 764 246 27 58 chr12 20820581 20820841 -122965614 - MLT1J LTR MaLR -241 270 19 453 347 62 32 chr12 20821443 20821812 -122964643 - L2 LINE L2 -1121 2193 1814 268 378 8 0 chr12 20822426 20822545 -122963910 - MIR SINE MIR 0 262 143 1739 188 27 0 chr12 20823151 20823444 -122963011 - AluJo SINE Alu -11 301 1 266 375 81 22 chr12 20824243 20824379 -122962076 - L2 LINE L2 -4 3268 3125 315 120 93 27 chr12 20825616 20825691 -122960764 - L1PA8 LINE L1 0 6172 6093 22 35 0 0 chr12 20826595 20826624 -122959831 + AT_rich Low_complexity Low_complexity 1 29 0 287 175 0 0 chr12 20827536 20827593 -122958862 + L1 LINE L1 5201 5257 -889 318 207 0 0 chr12 20827693 20827751 -122958704 + MSTA LTR MaLR 369 426 -2 23 0 0 0 chr12 20827836 20827859 -122958596 + AT_rich Low_complexity Low_complexity 1 23 0 278 231 0 51 chr12 20827882 20827960 -122958495 + MER93b LTR ERV1 270 343 -30 24 0 0 0 chr12 20829915 20829939 -122956516 + AT_rich Low_complexity Low_complexity 1 24 0 371 293 207 0 chr12 20830130 20830304 -122956151 - MIR SINE MIR -43 219 10 403 265 94 12 chr12 20830332 20830502 -122955953 - L1MC4a LINE L1 -1898 5910 5727 539 295 0 7 chr12 20830518 20830657 -122955798 - L2 LINE L2 0 3313 3176 459 194 65 0 chr12 20830803 20830911 -122955544 - L1MD2 LINE L1 -22 6337 6223 1065 133 0 0 chr12 20830911 20831062 -122955393 + THE1C LTR MaLR 1 151 -224 373 220 55 49 chr12 20831407 20831576 -122954879 + MLT1I LTR MaLR 231 565 -2 250 167 130 19 chr12 20831576 20831630 -122954825 - L2 LINE L2 -685 2629 2570 295 224 61 3 chr12 20831764 20831875 -122954580 - L1M3 LINE L1 -677 5491 5370 428 264 38 44 chr12 20831962 20832121 -122954334 - MIR SINE MIR -2 260 103 27861 44 2 0 chr12 20832132 20835540 -122950915 + L1P LINE L1 4 3418 -2728 626 312 32 28 chr12 20836840 20837058 -122949397 - MIR SINE MIR -27 235 17 616 288 132 0 chr12 20837084 20837296 -122949159 + MIR SINE MIR 23 262 0 223 255 39 69 chr12 20837478 20837580 -122948875 + MIR SINE MIR 49 147 -115 850 284 88 15 chr12 20838789 20838886 -122947569 - L1MD2 LINE L1 -2021 5787 5699 578 89 0 0 chr12 20838886 20838965 -122947490 - MADE1 DNA Mariner 0 80 2 850 284 88 15 chr12 20838965 20839275 -122947180 - L1MD2 LINE L1 -2109 5699 5350 441 324 66 23 chr12 20839308 20839567 -122946888 - L1MD2 LINE L1 -896 5250 4981 217 316 88 9 chr12 20840215 20840329 -122946126 - L2 LINE L2 -10 3303 3181 338 217 29 0 chr12 20840601 20840670 -122945785 - L2 LINE L2 -14 3258 3188 310 311 86 106 chr12 20840694 20840998 -122945457 - L2 LINE L2 -38 3234 2936 3329 86 286 0 chr12 20840998 20841533 -122944922 + LTR12 LTR ERV1 1 688 0 310 311 86 106 chr12 20841533 20841578 -122944877 - L2 LINE L2 -336 2936 2892 255 299 124 29 chr12 20841604 20841741 -122944714 - L2 LINE L2 -480 2834 2685 4403 176 33 1 chr12 20841770 20842618 -122943837 - L1P LINE L1 -1407 4739 3865 5629 122 18 10 chr12 20842619 20844066 -122942389 + L1PA14 LINE L1 4704 6161 0 641 162 84 7 chr12 20844130 20844272 -122942183 + L1MA9 LINE L1 6159 6311 -1 1300 222 19 0 chr12 20844298 20844559 -122941896 + AluJo SINE Alu 1 266 -46 2216 207 26 42 chr12 20844772 20845274 -122941181 - MER52A LTR ERV1 0 1755 1262 1611 142 8 0 chr12 20845376 20845644 -122940811 - L1 LINE L1 -907 5239 4970 780 106 28 14 chr12 20845659 20845801 -122940654 + CT-rich Low_complexity Low_complexity 2 145 0 969 165 11 27 chr12 20845808 20845996 -122940459 - L1 LINE L1 -1193 4953 4769 540 349 66 37 chr12 20846122 20846155 -122940300 + L2 LINE L2 2437 2468 -846 3457 137 27 0 chr12 20846155 20846668 -122939787 + MER1A DNA MER1_type 1 527 0 540 349 66 37 chr12 20846668 20847041 -122939414 + L2 LINE L2 2468 2855 -459 1422 165 32 19 chr12 20847058 20847373 -122939082 - L1MA9 LINE L1 -10 6302 5984 387 291 137 38 chr12 20847407 20847750 -122938705 + L2 LINE L2 2830 3206 -107 312 208 150 17 chr12 20847843 20847963 -122938492 + L2 LINE L2 3159 3294 -19 642 231 173 91 chr12 20848126 20848664 -122937791 + MER34C LTR ERV1 4 585 0 243 367 47 16 chr12 20849083 20849211 -122937244 + MIR3 SINE MIR 70 201 -7 971 209 107 0 chr12 20849413 20849628 -122936827 - MIR SINE MIR -5 257 20 443 231 154 13 chr12 20850438 20850601 -122935854 - MIR3 SINE MIR -14 194 15 22 0 0 0 chr12 20850989 20851011 -122935444 + AT_rich Low_complexity Low_complexity 1 22 0 1006 238 105 13 chr12 20851258 20851616 -122934839 - MER57A LTR ERV1 0 403 48 371 172 83 41 chr12 20852267 20852412 -122934043 - LTR37B LTR ERV1 -107 361 211 716 129 0 0 chr12 20852541 20852642 -122933813 - L1PA10 LINE L1 -13 6155 6055 5008 103 8 1 chr12 20852642 20853360 -122933095 + L1P LINE L1 3614 4339 -1807 563 222 45 45 chr12 20853377 20853575 -122932880 - LTR37B LTR ERV1 -270 198 1 339 297 0 17 chr12 20853845 20853963 -122932492 - L1MC5 LINE L1 -44 7917 7802 2775 221 67 41 chr12 20853993 20854031 -122932424 - L1ME1 LINE L1 0 6239 6203 856 124 0 0 chr12 20854031 20854152 -122932303 - L1PA10 LINE L1 -12 6156 6036 2775 221 67 41 chr12 20854152 20854727 -122931728 - L1ME1 LINE L1 -36 6203 5644 1974 136 144 24 chr12 20854727 20855109 -122931346 + MSTA LTR MaLR 1 428 0 2775 221 67 41 chr12 20855109 20855202 -122931253 - L1ME1 LINE L1 -595 5644 5555 2195 110 3 0 chr12 20855202 20855501 -122930954 + AluSg SINE Alu 4 303 -7 2775 221 67 41 chr12 20855501 20855895 -122930560 - L1ME1 LINE L1 -684 5555 5129 1674 252 73 42 chr12 20855919 20856031 -122930424 - L1ME1 LINE L1 -3321 2894 2787 2184 113 139 16 chr12 20856031 20856412 -122930043 + MSTA LTR MaLR 1 428 0 1674 252 73 42 chr12 20856412 20857077 -122929378 - L1ME1 LINE L1 -3428 2787 2116 2028 151 26 83 chr12 20857077 20857535 -122928920 + MSTB1 LTR MaLR 1 432 0 1674 252 73 42 chr12 20857535 20857903 -122928552 - L1ME1 LINE L1 -4099 2116 1761 272 184 0 0 chr12 20857962 20858011 -122928444 - U7 snRNA snRNA -14 49 1 376 162 108 18 chr12 20859179 20859290 -122927165 - LTR37B LTR ERV1 0 468 348 28 0 0 0 chr12 20861259 20861287 -122925168 + AT_rich Low_complexity Low_complexity 1 28 0 3597 139 18 21 chr12 20861298 20861915 -122924540 - L1MB1 LINE L1 -1 6167 5553 366 279 106 0 chr12 20862345 20862449 -122924006 + MIR3 SINE MIR 45 159 -49 189 0 0 0 chr12 20862573 20862594 -122923861 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 2091 101 7 0 chr12 20862594 20862871 -122923584 - AluY SINE Alu -29 282 4 867 219 6 6 chr12 20863825 20864008 -122922447 + LTR41 LTR ERVL 1 183 -590 674 248 26 88 chr12 20864180 20864486 -122921969 + LTR41 LTR ERVL 486 772 -1 781 254 147 0 chr12 20864958 20865182 -122921273 + MIR SINE MIR 6 262 0 345 125 0 0 chr12 20865265 20865321 -122921134 + (ATG)n Simple_repeat Simple_repeat 2 57 0 193 309 275 20 chr12 20866555 20866704 -122919751 - MER5A DNA MER1_type -1 188 2 746 310 48 37 chr12 20868507 20868859 -122917596 - L2 LINE L2 -1 3312 2957 203 61 30 0 chr12 20869041 20869074 -122917381 + (GA)n Simple_repeat Simple_repeat 1 34 0 521 210 12 80 chr12 20869118 20869205 -122917250 - MLT1A2 LTR MaLR -223 151 78 2696 94 6 3 chr12 20869205 20869568 -122916887 + THE1B LTR MaLR 1 364 0 521 210 12 80 chr12 20869568 20869642 -122916813 - MLT1A2 LTR MaLR -296 78 1 767 258 0 6 chr12 20870542 20870705 -122915750 + MLT1F1 LTR MaLR 1 162 -431 26 0 0 0 chr12 20871283 20871309 -122915146 + AT_rich Low_complexity Low_complexity 1 26 0 271 202 10 96 chr12 20871581 20871685 -122914770 + MIR SINE MIR 111 205 -57 205 330 35 43 chr12 20871970 20872085 -122914370 + MIR3 SINE MIR 72 185 -23 339 258 0 123 chr12 20872268 20872305 -122914150 - MIR SINE MIR 0 262 222 3200 49 5 2 chr12 20872305 20872712 -122913743 + L1PA6 LINE L1 5744 6151 -3 339 258 0 123 chr12 20872712 20872837 -122913618 - MIR SINE MIR -40 222 120 366 268 116 7 chr12 20873216 20873354 -122913101 - MIR SINE MIR 0 262 110 207 69 0 0 chr12 20873538 20873567 -122912888 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4155 72 24 35 chr12 20873567 20874160 -122912295 - L1PA8 LINE L1 -22 6150 5565 28 29 0 0 chr12 20874692 20874727 -122911728 + AT_rich Low_complexity Low_complexity 1 35 0 475 219 0 9 chr12 20874886 20875000 -122911455 + L1PB4 LINE L1 6043 6155 -1 754 342 127 23 chr12 20875017 20875798 -122910657 - L2 LINE L2 -2096 1218 357 2149 68 6 95 chr12 20875914 20876252 -122910203 + AluSg SINE Alu 1 308 -2 670 192 105 83 chr12 20876256 20876569 -122909886 - LTR56 LTR ERV1 -125 320 1 396 240 70 105 chr12 20876673 20876873 -122909582 + MIR SINE MIR 6 198 -64 327 120 0 167 chr12 20877524 20877632 -122908823 - L1MB3 LINE L1 0 6183 6094 188 260 207 33 chr12 20877926 20878076 -122908379 - MIR SINE MIR -10 252 77 867 228 147 11 chr12 20878831 20879078 -122907377 + MLT1F1 LTR MaLR 321 567 0 2297 306 80 40 chr12 20879092 20880058 -122906397 - L2 LINE L2 -1087 2227 1198 1962 111 35 7 chr12 20880058 20880346 -122906109 + AluSc SINE Alu 1 296 -13 2297 306 80 40 chr12 20880346 20880625 -122905830 - L2 LINE L2 -2116 1198 932 209 336 148 16 chr12 20880865 20880993 -122905462 + L2 LINE L2 3127 3271 -42 231 125 83 0 chr12 20883094 20883142 -122903313 - MER53 DNA DNA -137 52 1 421 306 155 10 chr12 20883171 20883364 -122903091 - MIR SINE MIR -7 255 35 632 284 95 31 chr12 20885658 20886046 -122900409 - L1MC5 LINE L1 -48 7913 7501 1023 224 30 25 chr12 20887316 20887553 -122898902 - MIR SINE MIR -23 239 2 651 198 0 3 chr12 20887609 20887751 -122898704 + L1ME1 LINE L1 6037 6334 0 325 240 69 108 chr12 20887983 20888362 -122898093 - L1MEc LINE L1 -3531 2684 2321 576 246 91 64 chr12 20888551 20888880 -122897575 - L1MEc LINE L1 -4822 1574 1237 552 188 145 7 chr12 20889148 20889286 -122897169 + MIR SINE MIR 106 262 0 251 284 37 12 chr12 20889298 20889379 -122897076 + MIR SINE MIR 109 191 -71 202 209 0 0 chr12 20889405 20889448 -122897007 + (TTG)n Simple_repeat Simple_repeat 2 44 0 478 167 0 44 chr12 20890049 20890163 -122896292 - MER96B DNA MER1_type? -59 358 250 1944 223 43 10 chr12 20890172 20890661 -122895794 - MLT1D LTR MaLR 0 505 1 1981 132 3 14 chr12 20891293 20891589 -122894866 - AluSx SINE Alu -19 293 1 186 156 0 0 chr12 20891707 20891739 -122894716 - MIR SINE MIR -91 117 86 236 341 9 28 chr12 20893015 20893123 -122893332 + MER5A DNA MER1_type 1 117 -72 232 298 99 33 chr12 20893039 20893160 -122893295 - MER5A DNA MER1_type -24 165 37 * 23 0 0 0 chr12 20893443 20893466 -122892989 + AT_rich Low_complexity Low_complexity 1 23 0 1906 132 4 4 chr12 20893492 20893773 -122892682 + AluSx SINE Alu 20 300 -12 676 274 50 39 chr12 20894478 20894759 -122891696 + L1M3e LINE L1 1663 1946 -5084 426 366 0 11 chr12 20894763 20894954 -122891501 + L2 LINE L2 2457 2645 -669 889 196 18 0 chr12 20894965 20895128 -122891327 + MER45A DNA AcHobo 13 178 0 188 333 118 0 chr12 20895156 20895249 -122891206 + L2 LINE L2 2662 2765 -549 878 157 39 0 chr12 20895286 20895439 -122891016 - L1PB1 LINE L1 -21 6130 5972 * 1507 223 11 13 chr12 20895418 20895791 -122890664 - L1 LINE L1 -1059 5087 4716 7619 91 57 33 chr12 20895791 20897021 -122889434 + pTR5 LTR ERV1 763 2021 -417 290 248 30 20 chr12 20897022 20897123 -122889332 + LTR30 LTR ERV1 541 642 -80 885 61 35 0 chr12 20897123 20897238 -122889217 + pTR5 LTR ERV1 66 184 -2254 610 219 65 0 chr12 20897243 20897398 -122889057 - L1PBa LINE L1 -6693 170 6 343 299 90 40 chr12 20897482 20897659 -122888796 + L2 LINE L2 2841 3026 -287 762 281 98 29 chr12 20897670 20898087 -122888368 - MLT1J2 LTR MaLR -3 447 2 477 349 60 5 chr12 20899324 20899539 -122886916 + MIR SINE MIR 1 227 -35 4878 130 32 45 chr12 20899548 20900029 -122886426 - L1PA16 LINE L1 0 6166 5680 2097 108 11 0 chr12 20900029 20900306 -122886149 - AluSg SINE Alu -30 280 1 4878 130 32 45 chr12 20900306 20900836 -122885619 - L1PA16 LINE L1 -486 5680 5167 306 252 8 84 chr12 20900872 20900991 -122885464 + L1MC/D LINE L1 5286 5395 -964 326 319 35 0 chr12 20901059 20901172 -122885283 + L1MC/D LINE L1 5548 5664 -2144 1399 200 13 10 chr12 20901204 20901514 -122884941 - L1P LINE L1 -982 5164 4854 243 291 12 70 chr12 20901536 20901622 -122884833 + L2 LINE L2 3191 3271 -1 548 247 50 108 chr12 20902281 20902662 -122883793 - L1MC4a LINE L1 -1902 5906 5548 181 0 69 0 chr12 20903734 20903763 -122882692 + (TTG)n Simple_repeat Simple_repeat 2 32 0 2230 104 3 0 chr12 20904249 20904548 -122881907 - AluSg SINE Alu -10 300 1 437 253 56 56 chr12 20904573 20904751 -122881704 - MLT1K LTR MaLR -6 582 405 483 230 162 7 chr12 20904752 20904900 -122881555 - MLT1A1 LTR MaLR -194 171 1 1564 258 60 71 chr12 20904903 20905566 -122880889 - MER21B LTR ERV1 -193 670 15 1674 104 5 0 chr12 20905650 20905872 -122880583 - AluSq SINE Alu -13 300 78 261 0 0 0 chr12 20906706 20906735 -122879720 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1965 144 3 3 chr12 20906816 20907114 -122879341 + AluJb SINE Alu 1 298 -14 608 205 26 0 chr12 20908483 20908600 -122877855 + LTR48B LTR ERV1 1 120 -524 464 150 34 122 chr12 20908608 20908755 -122877700 - MLT1E2 LTR MaLR -492 134 1 1999 116 14 0 chr12 20908784 20909069 -122877386 + AluSx SINE Alu 3 291 -21 303 337 129 51 chr12 20909130 20909542 -122876913 - L2 LINE L2 -1 3271 2828 1730 143 39 52 chr12 20910216 20910524 -122875931 - AluSx SINE Alu -8 304 1 22 35 0 0 chr12 20911157 20911186 -122875269 + AT_rich Low_complexity Low_complexity 1 29 0 1817 104 0 4 chr12 20912798 20913047 -122873408 - AluSg SINE Alu -9 301 54 229 240 177 31 chr12 20914873 20914969 -122871486 + MIR SINE MIR 95 204 -58 21 0 0 0 chr12 20914969 20914990 -122871465 + AT_rich Low_complexity Low_complexity 1 21 0 205 175 48 32 chr12 20915054 20915117 -122871338 + (TATAA)n Simple_repeat Simple_repeat 5 68 0 25 75 0 0 chr12 20915119 20915172 -122871283 + AT_rich Low_complexity Low_complexity 1 53 0 572 270 28 39 chr12 20915524 20915729 -122870726 + MIR SINE MIR 37 241 -21 1890 110 31 41 chr12 20915836 20916127 -122870328 + AluSx SINE Alu 1 288 -24 2492 78 0 0 chr12 20916140 20916447 -122870008 + AluSq SINE Alu 3 309 -4 2880 174 20 14 chr12 20916733 20917289 -122869166 - MER89 LTR ERV1 0 559 1 244 349 7 34 chr12 20917338 20917484 -122868971 - L3 LINE CR1 -127 1450 1309 2094 111 3 38 chr12 20917938 20918254 -122868201 - AluSx SINE Alu -5 307 3 2252 89 31 6 chr12 20919126 20919450 -122867005 + L1PA13 LINE L1 5814 6145 -18 213 39 0 0 chr12 20919453 20919479 -122866976 + (TAA)n Simple_repeat Simple_repeat 2 27 0 440 283 152 30 chr12 20919586 20919915 -122866540 + MLT1J1 LTR MaLR 76 444 -2 626 296 129 18 chr12 20920491 20920771 -122865684 - L2 LINE L2 -444 2870 2560 775 235 0 0 chr12 20920936 20921089 -122865366 - AluJb SINE Alu -16 296 144 213 39 0 0 chr12 20921464 20921490 -122864965 + (CA)n Simple_repeat Simple_repeat 2 27 0 530 319 94 60 chr12 20922512 20923257 -122863198 - L3 LINE CR1 -28 1549 780 300 115 0 0 chr12 20923271 20923323 -122863132 - L1PA15 LINE L1 -3 6162 6111 195 291 36 0 chr12 20925258 20925313 -122861142 - L3 LINE CR1 -814 763 707 29 28 0 0 chr12 20925383 20925419 -122861036 + AT_rich Low_complexity Low_complexity 1 36 0 3479 125 45 96 chr12 20925733 20926485 -122859970 - LTR1 LTR ERV1 -56 729 16 2142 99 3 3 chr12 20926575 20926869 -122859586 + AluY SINE Alu 1 294 -17 622 268 175 25 chr12 20926873 20927258 -122859197 + L1ME3A LINE L1 2593 2919 -3227 2361 78 3 0 chr12 20927258 20927553 -122858902 + AluY SINE Alu 1 296 -15 622 268 175 25 chr12 20927553 20927617 -122858838 + L1ME3A LINE L1 2919 2972 -3174 2162 112 0 7 chr12 20927617 20927913 -122858542 + AluSg SINE Alu 1 294 -16 622 268 175 25 chr12 20927913 20928303 -122858152 + L1ME3A LINE L1 2972 3559 -2587 2297 282 125 23 chr12 20928311 20928650 -122857805 + L1ME3A LINE L1 3630 3933 -2237 1028 224 9 26 chr12 20928650 20928878 -122857577 - MER58A DNA MER1_type 0 224 1 2297 282 125 23 chr12 20928878 20929888 -122856567 + L1ME3A LINE L1 3933 4838 -1332 2191 109 0 3 chr12 20929888 20930220 -122856235 - AluSq SINE Alu 0 331 1 2297 282 125 23 chr12 20930220 20930935 -122855520 + L1ME3A LINE L1 4838 5905 -265 293 322 28 51 chr12 20931080 20931257 -122855198 + L1ME3A LINE L1 5988 6160 -10 1268 188 106 0 chr12 20933136 20933391 -122853064 + AluJo SINE Alu 1 282 -30 567 162 11 39 chr12 20933394 20933573 -122852882 + GA-rich Low_complexity Low_complexity 1 174 0 240 143 16 32 chr12 20933590 20933653 -122852802 + GA-rich Low_complexity Low_complexity 2 63 0 216 320 144 21 chr12 20935248 20935345 -122851110 + MIR SINE MIR 47 155 -107 294 193 20 3 chr12 20935554 20935751 -122850704 + AluJo SINE Alu 1 257 -45 306 0 0 0 chr12 20935769 20935803 -122850652 + (CA)n Simple_repeat Simple_repeat 1 34 0 632 290 94 9 chr12 20936574 20936798 -122849657 + MIR SINE MIR 7 249 -13 24 0 0 0 chr12 20936963 20936987 -122849468 + AT_rich Low_complexity Low_complexity 1 24 0 228 353 24 0 chr12 20936989 20937074 -122849381 - MLT1K LTR MaLR -340 248 162 804 270 189 27 chr12 20937153 20937671 -122848784 + L1MC4 LINE L1 7441 8042 0 734 63 0 0 chr12 20938308 20938403 -122848052 - AluS SINE Alu -217 95 1 376 258 21 0 chr12 20938512 20938609 -122847846 + MIR SINE MIR 52 150 -112 25 51 0 0 chr12 20938612 20938651 -122847804 + AT_rich Low_complexity Low_complexity 1 39 0 211 214 107 0 chr12 20938735 20938791 -122847664 - L2 LINE L2 -62 3210 3149 25 51 0 0 chr12 20939064 20939103 -122847352 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 20939768 20939789 -122846666 + AT_rich Low_complexity Low_complexity 1 21 0 1695 170 123 157 chr12 20939847 20940871 -122845584 - Charlie2 DNA MER1_type -4 2858 1870 563 286 103 42 chr12 20940899 20941161 -122845294 - Charlie2 DNA MER1_type -2504 278 1 301 353 20 20 chr12 20941163 20941316 -122845139 - L2 LINE L2 -556 2758 2606 660 295 106 34 chr12 20941413 20941735 -122844720 - L3 LINE CR1 -244 1333 989 2546 40 30 0 chr12 20941962 20942262 -122844193 - AluY SINE Alu -2 309 1 528 233 68 0 chr12 20943440 20943573 -122842882 + L1ME3 LINE L1 6014 6155 -7 432 257 79 40 chr12 20944322 20944474 -122841981 + MIR3 SINE MIR 13 170 -38 190 322 52 61 chr12 20948122 20948237 -122838218 - MER5A DNA MER1_type -29 160 47 2062 106 26 7 chr12 20948539 20948841 -122837614 - AluY SINE Alu -3 308 1 1559 175 0 15 chr12 20950514 20950782 -122835673 - AluJo SINE Alu -11 301 38 32 81 0 0 chr12 20950789 20950863 -122835592 + AT_rich Low_complexity Low_complexity 1 74 0 379 352 80 56 chr12 20951211 20951498 -122834957 + L2 LINE L2 2979 3272 0 494 265 26 8 chr12 20953020 20953254 -122833201 + L1ME LINE L1 4146 4383 -1763 * 4416 225 12 28 chr12 20953236 20954475 -122831980 + L1M4 LINE L1 2916 4134 -2012 1134 242 9 0 chr12 20954475 20954702 -122831753 - Charlie1a DNA MER1_type -1224 231 3 4484 185 84 27 chr12 20954709 20954959 -122831496 + L1MA8 LINE L1 4790 5024 -1267 1693 141 36 7 chr12 20954959 20955235 -122831220 + AluSq SINE Alu 21 304 -9 4484 185 84 27 chr12 20955235 20956226 -122830229 + L1MA8 LINE L1 5024 6117 -174 2220 105 6 25 chr12 20956226 20956541 -122829914 - AluSx SINE Alu -2 310 2 4484 185 84 27 chr12 20956541 20956726 -122829729 + L1MA8 LINE L1 6117 6290 -1 285 331 120 0 chr12 20957667 20957809 -122828646 + L1ME LINE L1 5420 5578 -2230 4429 82 21 6 chr12 20957838 20958461 -122827994 - L1PB1 LINE L1 0 6151 5520 2252 91 7 3 chr12 20958477 20958774 -122827681 + AluSx SINE Alu 1 298 -14 703 289 76 24 chr12 20958789 20959038 -122827417 - MIR SINE MIR 0 262 1 317 296 63 13 chr12 20959045 20959204 -122827251 + L1ME LINE L1 5598 5764 -357 760 289 108 44 chr12 20959314 20959768 -122826687 + LTR33 LTR ERVL 35 517 -4 210 333 0 0 chr12 20959979 20960048 -122826407 + MIR SINE MIR 146 214 -48 2112 137 0 0 chr12 20964869 20965162 -122821293 - AluSx SINE Alu -19 293 1 2327 93 13 0 chr12 20965400 20965700 -122820755 + AluSp SINE Alu 1 304 -9 610 238 130 27 chr12 20966194 20966417 -122820038 - MIR SINE MIR -10 252 7 303 93 0 0 chr12 20967235 20967278 -122819177 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 392 299 51 114 chr12 20967295 20967413 -122819042 + L1ME LINE L1 31 155 -5915 2520 53 0 3 chr12 20967413 20967717 -122818738 - AluY SINE Alu -8 303 1 392 299 51 114 chr12 20967717 20968009 -122818446 + L1ME LINE L1 155 415 -5655 731 172 8 0 chr12 20968022 20968144 -122818311 - FLAM_A SINE Alu -10 123 1 1003 365 90 24 chr12 20968371 20969242 -122817213 + L1ME LINE L1 556 1483 -4778 386 184 97 0 chr12 20969401 20969515 -122816940 + L1ME LINE L1 2793 2917 -3163 2218 199 39 18 chr12 20970251 20970744 -122815711 + MLT1D LTR MaLR 1 503 -2 456 279 16 66 chr12 20970758 20970941 -122815514 - MER5B DNA MER1_type -1 177 4 1352 256 83 23 chr12 20970972 20971444 -122815011 - MLT1D LTR MaLR 0 505 6 226 329 20 9 chr12 20972628 20972743 -122813712 + MER5A DNA MER1_type 14 119 -59 222 116 0 0 chr12 20972894 20972937 -122813518 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1290 33 0 0 chr12 20972937 20973089 -122813366 - L1PA3 LINE L1 -6 6149 5998 5915 75 1 0 chr12 20974755 20975566 -122810889 + L1PA8A LINE L1 5293 6104 -27 2083 114 37 0 chr12 20976381 20976680 -122809775 + AluSg SINE Alu 1 310 0 190 327 106 35 chr12 20978200 20978454 -122808001 - L2 LINE L2 -28 3285 3014 233 291 0 0 chr12 20978882 20978937 -122807518 + (TG)n Simple_repeat Simple_repeat 2 56 0 3047 201 11 5 chr12 20979765 20980377 -122806078 + MER82 DNA MER2_type 1 616 -37 237 234 68 41 chr12 20980430 20980558 -122805897 + MIR SINE MIR 17 152 -68 784 152 0 16 chr12 20981168 20981293 -122805162 - FLAM_A SINE Alu -10 123 1 2516 177 18 81 chr12 20983094 20983649 -122802806 - MLT2B1 LTR ERVL 0 520 1 210 290 0 58 chr12 20984036 20984105 -122802350 + MIR SINE MIR 49 113 -149 2293 98 14 0 chr12 20984208 20984504 -122801951 - AluSp SINE Alu -13 300 1 202 283 104 38 chr12 20984545 20984651 -122801804 - MIR3 SINE MIR -54 154 42 180 336 55 82 chr12 20984702 20984812 -122801643 - L2 LINE L2 -37 3235 3129 405 315 93 6 chr12 20984945 20985107 -122801348 + MIR SINE MIR 22 197 -65 414 216 0 0 chr12 20985126 20985214 -122801241 + MER94 DNA DNA 8 95 -39 333 344 104 0 chr12 20985421 20985575 -122800880 - MIR3 SINE MIR -1 207 38 198 300 150 17 chr12 20986443 20986563 -122799892 + L2 LINE L2 3133 3268 -4 260 118 0 20 chr12 20986938 20986989 -122799466 + (GA)n Simple_repeat Simple_repeat 2 51 0 2168 107 19 23 chr12 20987750 20988060 -122798395 - AluSx SINE Alu -3 309 1 2300 108 13 0 chr12 20988625 20988932 -122797523 - AluSp SINE Alu -2 311 1 247 230 0 27 chr12 20989269 20989343 -122797112 - MLT1K LTR MaLR 0 588 517 1569 213 32 15 chr12 20989586 20989994 -122796461 + MLT1C LTR MaLR 53 467 0 1384 55 6 6 chr12 20990693 20990874 -122795581 - L1PA6 LINE L1 -11 6143 5963 2618 52 23 0 chr12 20990874 20991219 -122795236 + L1PA6 LINE L1 5601 5953 -201 2985 126 133 61 chr12 20991278 20992000 -122794455 - LTR1 LTR ERV1 0 785 12 409 318 194 5 chr12 20992613 20992824 -122793631 + MIR SINE MIR 2 252 -10 2142 186 38 2 chr12 20993948 20993982 -122792473 - MLT2D LTR ERVL 0 414 383 318 67 0 0 chr12 20993982 20994027 -122792428 + (TG)n Simple_repeat Simple_repeat 1 45 0 2142 186 38 2 chr12 20994027 20994390 -122792065 - MLT2D LTR ERVL -31 383 3 23 0 0 0 chr12 20994492 20994515 -122791940 + AT_rich Low_complexity Low_complexity 1 23 0 5331 57 0 3 chr12 20995218 20995886 -122790569 + L1PA8 LINE L1 5505 6170 -2 505 197 45 15 chr12 20998111 20998243 -122788212 + L1 LINE L1 4255 4390 -1756 817 287 38 4 chr12 20998243 20998480 -122787975 + MIR SINE MIR 8 252 -10 260 328 30 30 chr12 20998716 20998914 -122787541 + L2 LINE L2 2456 2653 -661 268 83 42 0 chr12 20999156 20999204 -122787251 + L1MB3 LINE L1 6132 6181 -2 1703 211 45 31 chr12 20999399 21000026 -122786429 + MER52A LTR ERV1 1 800 -955 1744 131 12 0 chr12 21000193 21000445 -122786010 + AluJb SINE Alu 46 300 -12 239 178 0 0 chr12 21000598 21000643 -122785812 + MER96B DNA MER1_type? 192 236 -181 2441 97 0 0 chr12 21001426 21001726 -122784729 + AluSg SINE Alu 4 303 -7 442 211 73 9 chr12 21002032 21002141 -122784314 + MIR SINE MIR 147 262 0 1981 145 0 22 chr12 21002264 21002581 -122783874 - AluJb SINE Alu -2 310 1 2310 82 0 22 chr12 21002583 21002899 -122783556 - AluY SINE Alu -2 309 1 686 201 66 33 chr12 21003189 21003433 -122783022 + Charlie1 DNA MER1_type 2510 2761 0 301 314 29 20 chr12 21003620 21003722 -122782733 - MIR SINE MIR -51 211 109 1330 207 66 9 chr12 21004168 21004305 -122782150 - MLT1A1 LTR MaLR 0 365 237 496 125 0 0 chr12 21004305 21004385 -122782070 - MADE1 DNA Mariner 0 80 1 1330 207 66 9 chr12 21004385 21004580 -122781875 - MLT1A1 LTR MaLR -128 237 14 333 308 92 39 chr12 21006830 21006960 -122779495 - L2 LINE L2 0 3272 3136 216 0 0 0 chr12 21007081 21007105 -122779350 + (A)n Simple_repeat Simple_repeat 1 24 0 266 283 41 59 chr12 21007506 21007764 -122778691 + MLT1L LTR MaLR 1 318 -297 203 304 0 18 chr12 21010389 21010445 -122776010 - L2 LINE L2 -2 3311 3257 203 330 60 10 chr12 21010980 21011080 -122775375 - L2 LINE L2 0 3272 3168 830 209 16 27 chr12 21012500 21012687 -122773768 - MER5A DNA MER1_type -4 185 1 235 277 15 0 chr12 21012688 21012753 -122773702 + MER5B DNA MER1_type 111 176 -2 238 334 87 65 chr12 21013160 21013483 -122772972 - L2 LINE L2 -1857 1457 1128 3057 106 151 16 chr12 21013705 21014250 -122772205 + LTR35 LTR ERV1 1 618 0 383 121 0 0 chr12 21014439 21014497 -122771958 + LTR35 LTR ERV1 50 107 -511 24 53 0 0 chr12 21014641 21014679 -122771776 + AT_rich Low_complexity Low_complexity 1 38 0 204 276 79 64 chr12 21015627 21015830 -122770625 - L2 LINE L2 -99 3214 3009 372 303 61 23 chr12 21015910 21016042 -122770413 - L2 LINE L2 -614 2700 2564 214 109 22 65 chr12 21016989 21017005 -122769450 + GA-rich Low_complexity Low_complexity 3 18 -28 2280 114 0 0 chr12 21017005 21017313 -122769142 + AluSc SINE Alu 1 308 -1 214 109 22 65 chr12 21017313 21017342 -122769113 + GA-rich Low_complexity Low_complexity 18 46 0 3385 41 5 0 chr12 21018754 21019169 -122767286 + L1PA4 LINE L1 5735 6151 -4 275 181 0 12 chr12 21019376 21019459 -122766996 + (TA)n Simple_repeat Simple_repeat 2 83 0 435 327 122 19 chr12 21019588 21019964 -122766491 + L2 LINE L2 2331 2745 -569 232 86 29 0 chr12 21020402 21020437 -122766018 - L2 LINE L2 -9 3304 3269 22 0 0 0 chr12 21023469 21023491 -122762964 + AT_rich Low_complexity Low_complexity 1 22 0 1236 123 23 32 chr12 21024301 21024520 -122761935 + THE1C LTR MaLR 159 375 0 1403 272 80 67 chr12 21024565 21025516 -122760939 + HAL1 LINE L1 433 1395 -1112 2500 233 111 14 chr12 21025860 21026939 -122759516 + L1ME3 LINE L1 4972 6155 -7 647 200 97 24 chr12 21027718 21027883 -122758572 + MER5B DNA MER1_type 1 177 -1 1051 148 6 6 chr12 21028315 21028497 -122757958 + L1PB1 LINE L1 5957 6138 -13 610 242 70 23 chr12 21028762 21028977 -122757478 + MER110 LTR ERV1 246 470 -21 186 43 0 0 chr12 21029991 21030014 -122756441 + (TG)n Simple_repeat Simple_repeat 1 23 0 314 280 40 0 chr12 21030376 21030476 -122755979 + MIR SINE MIR 78 181 -81 257 425 12 12 chr12 21031537 21031697 -122754758 + L2 LINE L2 3103 3262 -10 692 210 35 142 chr12 21032012 21032386 -122754069 - MER33 DNA MER1_type -1 323 1 221 229 42 0 chr12 21033323 21033371 -122753084 - L2 LINE L2 -92 3221 3172 15945 78 7 1 chr12 21034227 21037216 -122749239 - L1PA7 LINE L1 0 6154 3177 209 250 96 77 chr12 21037585 21037689 -122748766 + L2 LINE L2 3208 3313 0 988 210 179 53 chr12 21037890 21038431 -122748024 + MLT1G LTR MaLR 2 573 -17 874 126 0 7 chr12 21038483 21038626 -122747829 - L1MB7 LINE L1 -16 6168 6027 267 260 0 14 chr12 21038893 21038966 -122747489 - MIR SINE MIR -21 241 170 2523 68 0 0 chr12 21039252 21039559 -122746896 + AluY SINE Alu 1 307 -4 265 235 25 0 chr12 21039707 21039788 -122746667 + (TA)n Simple_repeat Simple_repeat 1 83 0 192 152 0 0 chr12 21039876 21039909 -122746546 + A-rich Low_complexity Low_complexity 1 33 0 252 140 60 0 chr12 21040424 21040474 -122745981 - MER116 DNA Mariner -26 54 2 391 150 0 0 chr12 21040727 21040787 -122745668 - MLT1J LTR MaLR 0 511 452 1447 150 101 28 chr12 21040831 21041117 -122745338 + AluJo SINE Alu 1 307 -5 285 277 130 47 chr12 21041192 21041231 -122745224 + L1MC/D LINE L1 5543 5577 -2231 1839 191 82 3 chr12 21041231 21041623 -122744832 - MSTA LTR MaLR -3 425 3 285 277 130 47 chr12 21041623 21041836 -122744619 + L1MC/D LINE L1 5577 5816 -1992 21 82 0 0 chr12 21041848 21041897 -122744558 + AT_rich Low_complexity Low_complexity 1 49 0 21494 157 11 20 chr12 21041928 21046956 -122739499 + L1P3 LINE L1 2 5060 -1401 2434 93 0 0 chr12 21049533 21049844 -122736611 + AluSq SINE Alu 1 311 -2 291 394 0 30 chr12 21050308 21050440 -122736015 + MIR SINE MIR 16 143 -65 480 286 66 39 chr12 21050723 21050905 -122735550 + MIR SINE MIR 32 218 -44 361 90 30 0 chr12 21052060 21052127 -122734328 + (GA)n Simple_repeat Simple_repeat 2 70 0 216 351 13 0 chr12 21053375 21053452 -122733003 - L2 LINE L2 -4 3309 3232 * 599 326 133 0 chr12 21053447 21053711 -122732744 + L2 LINE L2 1406 1704 -1610 519 213 29 0 chr12 21053743 21053879 -122732576 - LTR37A LTR ERV1 0 426 287 3869 147 28 35 chr12 21053879 21054622 -122731833 + L1MB3 LINE L1 5444 6181 -2 4529 156 42 38 chr12 21054753 21055692 -122730763 - L1MA8 LINE L1 0 6291 5350 1033 216 34 8 chr12 21055701 21055937 -122730518 - LTR37A LTR ERV1 -177 249 8 239 143 0 0 chr12 21056023 21056058 -122730397 + MLT1H LTR MaLR 73 107 -442 2286 94 0 16 chr12 21056058 21056366 -122730089 + AluSg SINE Alu 1 303 -7 1317 249 71 56 chr12 21056382 21056831 -122729624 + MLT1H LTR MaLR 94 549 0 465 329 6 12 chr12 21056832 21056996 -122729459 + L2 LINE L2 2403 2565 -749 33 90 0 0 chr12 21057017 21057106 -122729349 + AT_rich Low_complexity Low_complexity 1 89 0 279 342 37 68 chr12 21057122 21057283 -122729172 + L2 LINE L2 3117 3272 0 819 97 0 0 chr12 21057325 21057439 -122729016 + MER85 DNA T2_type 1 114 -25 209 297 14 40 chr12 21057607 21057681 -122728774 + L2 LINE L2 3234 3305 -8 298 330 28 0 chr12 21058372 21058478 -122727977 + Charlie2 DNA MER1_type 29 137 -2645 1241 201 201 65 chr12 21058587 21059285 -122727170 + Charlie2 DNA MER1_type 1856 2648 -214 21 0 0 0 chr12 21060250 21060271 -122726184 + AT_rich Low_complexity Low_complexity 1 21 0 719 127 0 8 chr12 21060871 21060989 -122725466 - Ricksha DNA DNA -7 3247 3131 890 171 7 0 chr12 21061001 21061153 -122725302 - FRAM SINE Alu -16 160 8 8479 126 30 22 chr12 21061160 21062092 -122724363 - Ricksha DNA DNA -121 3125 2175 4424 86 147 57 chr12 21062092 21062848 -122723607 - LTR12 LTR ERV1 -2 824 1 8479 126 30 22 chr12 21062848 21063336 -122723119 - Ricksha DNA DNA -1071 2175 1693 755 186 5 5 chr12 21063338 21063531 -122722924 - Ricksha DNA DNA -969 285 1 874 130 0 0 chr12 21064913 21065036 -122721419 + THE1B LTR MaLR 1 123 -241 429 145 13 13 chr12 21065137 21065213 -122721242 + THE1B LTR MaLR 287 362 -2 534 282 11 23 chr12 21066430 21066604 -122719851 + MER91B DNA MER1_type 4 175 -15 213 286 86 36 chr12 21066634 21066774 -122719681 + MIR SINE MIR 56 202 -60 296 172 31 16 chr12 21067357 21067421 -122719034 + MLT1K LTR MaLR 189 253 -335 405 0 0 0 chr12 21067856 21067901 -122718554 + (CA)n Simple_repeat Simple_repeat 2 46 0 2178 84 19 10 chr12 21067955 21068263 -122718192 - AluY SINE Alu 0 311 1 246 207 35 0 chr12 21070525 21070583 -122715872 + GA-rich Low_complexity Low_complexity 2 61 0 252 0 0 0 chr12 21070730 21070758 -122715697 + (T)n Simple_repeat Simple_repeat 1 28 0 2181 107 0 0 chr12 21071059 21071366 -122715089 + AluSx SINE Alu 5 311 0 389 113 28 0 chr12 21071834 21071905 -122714550 + MLT1D LTR MaLR 433 505 0 1105 169 73 119 chr12 21071924 21072268 -122714187 - MLT1D LTR MaLR -177 328 1 313 256 80 0 chr12 21072278 21072403 -122714052 + L1M4 LINE L1 2302 2436 -3710 2442 63 0 0 chr12 21072799 21073086 -122713369 - AluY SINE Alu -24 287 1 181 359 0 0 chr12 21073602 21073655 -122712800 + L2 LINE L2 3207 3259 -13 1592 167 35 37 chr12 21073663 21074014 -122712441 + MLT1B LTR MaLR 1 465 -2 186 43 0 0 chr12 21074088 21074111 -122712344 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 25 90 0 0 chr12 21074714 21074781 -122711674 + AT_rich Low_complexity Low_complexity 1 67 0 2139 100 27 0 chr12 21074835 21075134 -122711321 - AluSq SINE Alu -6 307 1 1421 195 3 30 chr12 21075157 21075455 -122711000 - AluJo SINE Alu -12 290 1 399 154 77 0 chr12 21075497 21075588 -122710867 - L1MA8 LINE L1 0 6291 6194 283 157 0 0 chr12 21076368 21076419 -122710036 - L1MB4 LINE L1 0 6180 6130 74 32 0 0 chr12 21077617 21077712 -122708743 + AT_rich Low_complexity Low_complexity 1 95 0 1014 167 4 94 chr12 21077860 21078094 -122708361 + AluJb SINE Alu 86 298 -14 194 233 151 0 chr12 21078554 21078627 -122707828 - L2 LINE L2 0 3272 3189 191 356 59 17 chr12 21078644 21078762 -122707693 - MIR SINE MIR -21 241 119 352 281 54 84 chr12 21078922 21079125 -122707330 + MIR SINE MIR 2 198 -64 325 310 30 20 chr12 21079120 21079220 -122707235 + MIR SINE MIR 12 112 -150 * 946 193 190 49 chr12 21079293 21079640 -122706815 + MSTD LTR MaLR 1 396 0 24 0 0 0 chr12 21079640 21079664 -122706791 + AT_rich Low_complexity Low_complexity 1 24 0 600 224 83 75 chr12 21079669 21079815 -122706640 + LTR9 LTR ERV1 299 449 -163 1898 171 3 0 chr12 21079815 21080136 -122706319 - AluSx SINE Alu 0 312 1 600 224 83 75 chr12 21080136 21080217 -122706238 + LTR9 LTR ERV1 449 528 -84 219 363 78 0 chr12 21080410 21080512 -122705943 + L2 LINE L2 2595 2704 -610 967 119 16 52 chr12 21080994 21081188 -122705267 + L1MA8 LINE L1 6083 6269 -22 469 0 16 16 chr12 21081188 21081250 -122705205 + (TG)n Simple_repeat Simple_repeat 1 62 0 643 77 0 0 chr12 21081297 21081388 -122705067 - L1PA3 LINE L1 0 6155 6065 23 33 0 0 chr12 21081389 21081419 -122705036 + AT_rich Low_complexity Low_complexity 1 30 0 1030 284 134 30 chr12 21081517 21081979 -122704476 - LTR33 LTR ERVL -10 511 2 247 303 67 73 chr12 21082237 21082402 -122704053 + L2 LINE L2 3150 3313 0 272 87 58 101 chr12 21082536 21082605 -122703850 - FLAM SINE Alu 0 133 69 2116 115 7 3 chr12 21084065 21084361 -122702094 + AluSq SINE Alu 1 297 -16 2434 68 3 10 chr12 21085465 21085773 -122700682 + AluY SINE Alu 1 306 -5 646 344 208 25 chr12 21086672 21087954 -122698501 - L3 LINE CR1 -1 1576 60 1789 146 0 52 chr12 21088094 21088402 -122698053 - AluJo SINE Alu -17 295 4 883 259 64 12 chr12 21088994 21089245 -122697210 + LTR50 LTR ERVL 388 651 -144 643 199 37 12 chr12 21089986 21090147 -122696308 - Charlie1a DNA MER1_type 0 1455 1291 3219 235 51 10 chr12 21090289 21091114 -122695341 - Charlie1a DNA MER1_type -596 859 1 207 0 0 0 chr12 21092591 21092614 -122693841 + (A)n Simple_repeat Simple_repeat 1 23 0 286 228 196 43 chr12 21093708 21093800 -122692655 - MER5B DNA MER1_type -52 126 21 872 178 89 0 chr12 21093814 21093983 -122692472 + MER5A DNA MER1_type 6 189 0 620 209 150 7 chr12 21094031 21094184 -122692271 - MER8 DNA MER2_type 0 239 65 428 302 75 6 chr12 21094617 21094776 -122691679 - MIR SINE MIR -30 232 63 285 313 76 21 chr12 21095981 21096125 -122690330 + MIR SINE MIR 47 198 -64 1745 79 32 0 chr12 21147469 21147722 -122638733 - L1MA2 LINE L1 0 6304 6044 184 381 16 24 chr12 21147744 21147870 -122638585 - MIR SINE MIR -65 143 19 2384 45 0 36 chr12 21148191 21148499 -122637956 + AluY SINE Alu 1 297 -14 210 365 0 35 chr12 21148757 21148842 -122637613 + L2 LINE L2 3191 3272 0 435 207 97 62 chr12 21149001 21149146 -122637309 + MIR SINE MIR 57 206 -56 21 36 0 0 chr12 21149680 21149708 -122636747 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 21149820 21149841 -122636614 + AT_rich Low_complexity Low_complexity 1 21 0 188 323 68 30 chr12 21150417 21150550 -122635905 + MIR SINE MIR 75 212 -50 189 0 0 0 chr12 21151105 21151126 -122635329 + (A)n Simple_repeat Simple_repeat 1 21 0 468 276 92 27 chr12 21151711 21151896 -122634559 + MIR SINE MIR 47 243 -19 1403 247 42 9 chr12 21152157 21152489 -122633966 - MLT1A2 LTR MaLR 0 374 32 287 139 70 0 chr12 21152489 21152551 -122633904 - MLT1A1 LTR MaLR -289 76 1 225 183 0 0 chr12 21153088 21153148 -122633307 + (TA)n Simple_repeat Simple_repeat 2 61 0 222 37 0 0 chr12 21153148 21153175 -122633280 + (GA)n Simple_repeat Simple_repeat 2 28 0 236 399 6 12 chr12 21153986 21154149 -122632306 + L2 LINE L2 2692 2853 -461 2394 67 6 22 chr12 21154226 21154541 -122631914 - AluY SINE Alu -1 310 1 256 354 50 0 chr12 21155451 21155550 -122630905 + L2 LINE L2 3160 3263 -9 291 309 66 31 chr12 21155553 21155754 -122630701 - MIR SINE MIR -41 221 16 213 121 0 0 chr12 21155754 21155787 -122630668 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 203 433 28 11 chr12 21155967 21156147 -122630308 - L2 LINE L2 -214 3058 2876 5361 256 39 19 chr12 21156255 21160529 -122625926 - L1 LINE L1 -2958 4209 3 288 229 51 8 chr12 21160597 21160715 -122625740 - L1M4 LINE L1 -1031 5115 4993 512 347 129 27 chr12 21160957 21161579 -122624876 + L3 LINE CR1 187 871 -706 290 295 78 93 chr12 21162056 21162249 -122624206 - L2 LINE L2 0 3313 3124 3825 35 29 2 chr12 21162343 21162822 -122623633 + L1PA3 LINE L1 5664 6155 0 28 48 0 0 chr12 21163117 21163159 -122623296 + AT_rich Low_complexity Low_complexity 1 42 0 420 185 0 0 chr12 21163236 21163301 -122623154 + L1MCa LINE L1 460 524 -5902 1130 270 89 65 chr12 21163321 21163813 -122622642 - MLT1E LTR MaLR 0 593 90 7043 173 81 10 chr12 21163814 21165255 -122621200 + L1MC1 LINE L1 34 1577 -4849 14602 227 38 30 chr12 21165296 21170889 -122615566 + L1PA15 LINE L1 7 6158 -658 1243 155 0 5 chr12 21170989 21171196 -122615259 + L1PA15 LINE L1 6609 6814 -2 1780 201 56 21 chr12 21171197 21172071 -122614384 + L1MC1 LINE L1 1701 2734 -3873 4380 160 54 12 chr12 21172085 21173488 -122612967 + L1MA7 LINE L1 4707 6280 -11 2670 227 36 87 chr12 21173518 21174708 -122611747 + L1MC1 LINE L1 2599 3727 -2699 12084 140 26 11 chr12 21174708 21176444 -122610011 - Tigger1 DNA MER2_type 0 2418 647 2186 169 52 5 chr12 21176444 21176847 -122609608 + MSTB LTR MaLR 1 422 -4 12084 140 26 11 chr12 21176847 21177109 -122609346 - Tigger1 DNA MER2_type -1771 647 390 3387 210 32 33 chr12 21177109 21177214 -122609241 + L1MC1 LINE L1 3964 4068 -2358 1533 124 151 112 chr12 21177214 21177626 -122608829 + MSTA LTR MaLR 1 428 0 3387 210 32 33 chr12 21177626 21178111 -122608344 + L1MC1 LINE L1 4068 4555 -1871 2227 108 51 17 chr12 21178111 21178463 -122607992 - THE1B LTR MaLR 0 364 1 3387 210 32 33 chr12 21178463 21178768 -122607687 + L1MC1 LINE L1 4555 4859 -1567 * 5708 192 19 15 chr12 21178766 21180239 -122606216 + L1MC1 LINE L1 5133 6613 0 454 243 301 12 chr12 21180558 21180731 -122605724 - MIR SINE MIR -28 234 12 215 296 52 22 chr12 21180779 21180914 -122605541 + L2 LINE L2 1914 2052 -1262 409 280 107 7 chr12 21181157 21181307 -122605148 - L2 LINE L2 -10 3303 3139 2164 163 5 25 chr12 21183973 21184371 -122602084 + MLT1B LTR MaLR 1 390 0 703 65 0 40 chr12 21184493 21184617 -122601838 + (TA)n Simple_repeat Simple_repeat 2 120 0 328 259 0 9 chr12 21184645 21184753 -122601702 - L1ME LINE L1 -304 5817 5711 190 349 0 16 chr12 21184755 21184818 -122601637 + MIR SINE MIR 47 108 -154 316 229 115 61 chr12 21186148 21186303 -122600152 - HAL1b LINE L1 -3 6118 1187 344 211 116 0 chr12 21186371 21186466 -122599989 + MIR SINE MIR 156 261 -1 21 36 0 0 chr12 21186732 21186760 -122599695 + AT_rich Low_complexity Low_complexity 1 28 0 356 286 53 8 chr12 21186876 21187009 -122599446 - MIR SINE MIR -2 260 122 2218 251 98 33 chr12 21187034 21187731 -122598724 + L1MB8 LINE L1 21 762 -6097 * 4690 189 44 20 chr12 21187727 21189043 -122597412 + L1MB8 LINE L1 5160 6528 -461 429 20 0 0 chr12 21189043 21189093 -122597362 + (CA)n Simple_repeat Simple_repeat 2 51 0 4690 189 44 20 chr12 21189093 21189534 -122596921 + L1MB8 LINE L1 6528 6957 -32 1768 168 50 25 chr12 21189535 21189893 -122596562 + MLT2D LTR ERVL 5 371 -43 280 93 19 19 chr12 21189896 21189950 -122596505 + (TA)n Simple_repeat Simple_repeat 1 54 0 260 126 89 0 chr12 21189959 21190011 -122596444 + MLT2C2 LTR ERVL 417 464 0 185 270 27 27 chr12 21190038 21190112 -122596343 - MIR SINE MIR -123 139 66 22 0 0 0 chr12 21190594 21190616 -122595839 + AT_rich Low_complexity Low_complexity 1 22 0 192 402 68 24 chr12 21192671 21192967 -122593488 - L3 LINE CR1 -81 1496 1188 22 35 0 0 chr12 21192970 21192999 -122593456 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr12 21193012 21193044 -122593411 + AT_rich Low_complexity Low_complexity 1 32 0 301 237 118 0 chr12 21195533 21195626 -122590829 + MIR SINE MIR 118 221 -41 21 0 0 0 chr12 21196486 21196507 -122589948 + AT_rich Low_complexity Low_complexity 1 21 0 288 242 0 0 chr12 21196976 21197071 -122589384 + (CATATA)n Simple_repeat Simple_repeat 5 99 0 27 49 0 0 chr12 21197411 21197452 -122589003 + AT_rich Low_complexity Low_complexity 1 41 0 259 328 144 29 chr12 21197545 21197719 -122588736 - MIR SINE MIR -46 216 23 2089 104 0 14 chr12 21197958 21198281 -122588174 - AluSx SINE Alu 0 319 1 2089 117 3 0 chr12 21198313 21198596 -122587859 - AluSp SINE Alu -8 305 22 227 349 48 24 chr12 21198648 21198731 -122587724 - L2 LINE L2 -49 3223 3139 22 94 0 0 chr12 21199331 21199395 -122587060 + AT_rich Low_complexity Low_complexity 1 64 0 231 36 0 0 chr12 21200577 21200605 -122585850 + (CA)n Simple_repeat Simple_repeat 2 29 0 332 336 48 0 chr12 21201204 21201350 -122585105 + L1M3e LINE L1 299 451 -6579 232 291 63 16 chr12 21201363 21201490 -122584965 - L1MCc LINE L1 -6268 155 23 357 207 0 69 chr12 21201501 21201617 -122584838 - L1ME LINE L1 -301 5820 5713 1327 125 5 0 chr12 21201644 21201836 -122584619 - MSTB1 LTR MaLR -13 419 227 755 125 0 0 chr12 21201857 21201969 -122584486 - MSTB1 LTR MaLR -320 112 1 486 180 0 23 chr12 21202355 21202483 -122583972 + CT-rich Low_complexity Low_complexity 3 127 0 2159 93 10 0 chr12 21202516 21202807 -122583648 + AluSx SINE Alu 1 294 -18 231 265 0 0 chr12 21203742 21203791 -122582664 - L3 LINE CR1 -19 1558 1510 2373 198 2 2 chr12 21204839 21205299 -122581156 - L1P LINE L1 -1217 4929 4470 948 249 85 14 chr12 21205448 21205802 -122580653 - LTR37A LTR ERV1 0 426 48 1921 240 67 52 chr12 21205810 21206427 -122580028 + MLT1E2 LTR MaLR 1 626 0 1869 103 56 56 chr12 21207707 21208009 -122578446 + AluSx SINE Alu 1 302 -10 348 137 50 35 chr12 21208293 21208578 -122577877 + (TA)n Simple_repeat Simple_repeat 1 289 0 1170 155 27 133 chr12 21208680 21209047 -122577408 + MLT1A1 LTR MaLR 38 365 0 227 255 0 0 chr12 21209523 21209574 -122576881 + CT-rich Low_complexity Low_complexity 2 52 0 334 333 75 33 chr12 21210298 21210538 -122575917 + L2 LINE L2 2344 2593 -721 352 272 80 16 chr12 21210599 21210724 -122575731 + MIR SINE MIR 105 237 -25 2299 85 3 0 chr12 21210936 21211229 -122575226 - AluSp SINE Alu -16 297 4 212 226 16 57 chr12 21212184 21212308 -122574147 + (TTTA)n Simple_repeat Simple_repeat 4 122 0 606 180 8 23 chr12 21212316 21212444 -122574011 - FLAM_A SINE Alu -6 136 11 260 150 0 0 chr12 21213207 21213247 -122573208 + L2 LINE L2 3226 3265 -7 218 171 0 0 chr12 21213286 21213321 -122573134 + (CA)n Simple_repeat Simple_repeat 2 36 0 363 333 16 8 chr12 21213741 21213867 -122572588 - MIR SINE MIR -113 149 23 1918 100 3 60 chr12 21213987 21214331 -122572124 + AluSx SINE Alu 1 327 0 422 320 59 106 chr12 21215622 21216215 -122570240 + L2 LINE L2 2358 2919 -353 1197 106 5 25 chr12 21216215 21216414 -122570041 + MER107 DNA MER1_type 3 197 0 422 320 59 106 chr12 21216414 21216697 -122569758 + L2 LINE L2 2919 3214 -58 240 324 27 54 chr12 21219015 21219163 -122567292 - L2 LINE L2 -459 2855 2712 295 244 0 122 chr12 21220438 21220553 -122565902 + MER5A DNA MER1_type 9 109 -80 180 238 148 30 chr12 21221483 21221584 -122564871 - L2 LINE L2 -1 3312 3200 1951 132 24 3 chr12 21221585 21221873 -122564582 - AluSx SINE Alu -18 294 1 24 0 0 0 chr12 21222204 21222228 -122564227 + AT_rich Low_complexity Low_complexity 1 24 0 2534 46 0 3 chr12 21222626 21222928 -122563527 - AluY SINE Alu -10 301 1 233 365 21 36 chr12 21224006 21224198 -122562257 + L2 LINE L2 2658 2846 -468 236 407 106 21 chr12 21224634 21224870 -122561585 - L2 LINE L2 -1 3271 3016 23 33 0 0 chr12 21226034 21226064 -122560391 + AT_rich Low_complexity Low_complexity 1 30 0 5472 164 27 26 chr12 21226270 21226787 -122559668 + L1MC2 LINE L1 5186 5701 -643 2136 75 7 4 chr12 21226787 21227067 -122559388 - AluSc SINE Alu -28 281 1 5472 164 27 26 chr12 21227067 21227299 -122559156 + L1MC2 LINE L1 5701 5931 -413 1902 208 5 37 chr12 21227299 21227708 -122558747 + MSTD LTR MaLR 1 396 0 5472 164 27 26 chr12 21227708 21228106 -122558349 + L1MC2 LINE L1 5931 6336 -8 22 70 0 0 chr12 21228418 21228461 -122557994 + AT_rich Low_complexity Low_complexity 1 43 0 603 33 11 22 chr12 21230244 21230336 -122556119 + (TATAA)n Simple_repeat Simple_repeat 1 91 0 1063 266 67 36 chr12 21230339 21230760 -122555695 + L1MC4a LINE L1 5450 5883 -1925 20627 169 28 25 chr12 21230800 21233217 -122553238 - L1 LINE L1 -2018 5547 3140 1176 54 0 0 chr12 21233217 21233365 -122553090 - L1PA4 LINE L1 -3 6152 6005 20627 169 28 25 chr12 21233365 21236331 -122550124 - L1 LINE L1 -4425 3140 13 306 0 0 0 chr12 21236732 21236766 -122549689 + (TG)n Simple_repeat Simple_repeat 2 35 0 454 244 30 61 chr12 21236838 21236969 -122549486 + L2 LINE L2 3187 3313 0 34 24 0 0 chr12 21238019 21238060 -122548395 + AT_rich Low_complexity Low_complexity 1 41 0 644 270 22 22 chr12 21239330 21239508 -122546947 - MER5B DNA MER1_type 0 178 1 1172 190 20 92 chr12 21239531 21239836 -122546619 - L1M1 LINE L1 -7266 299 17 342 67 0 0 chr12 21240159 21240204 -122546251 + (TG)n Simple_repeat Simple_repeat 2 46 0 2277 107 10 0 chr12 21240393 21240701 -122545754 + AluSp SINE Alu 1 311 -2 788 164 14 14 chr12 21240848 21240988 -122545467 + LTR40a LTR ERVL 371 510 -9 305 221 0 107 chr12 21241839 21241961 -122544494 + MER31-int LTR ERV1 3394 3502 -1434 265 311 47 34 chr12 21242296 21242444 -122544011 + MER31-int LTR ERV1 3841 3990 -946 376 157 124 11 chr12 21242687 21242776 -122543679 + LTR37B LTR ERV1 64 162 -306 351 261 128 15 chr12 21242911 21243114 -122543341 + LTR37B LTR ERV1 243 468 0 5428 51 14 9 chr12 21243360 21244052 -122542403 + L1PA7 LINE L1 5402 6097 -57 582 83 0 0 chr12 21244089 21244173 -122542282 + L1PA7 LINE L1 6070 6153 -1 37 0 0 0 chr12 21244425 21244462 -122541993 + AT_rich Low_complexity Low_complexity 1 37 0 210 147 0 0 chr12 21244706 21244740 -122541715 + (TG)n Simple_repeat Simple_repeat 1 34 0 2383 139 8 5 chr12 21244740 21245114 -122541341 - THE1C LTR MaLR 0 375 1 9093 127 56 36 chr12 21245119 21246663 -122539792 - THE1C-int LTR MaLR -6 1574 1 2555 125 3 8 chr12 21246663 21247040 -122539415 - THE1C LTR MaLR 0 375 1 15739 145 36 12 chr12 21247624 21249985 -122536470 - Tigger4(Zombi) DNA MER2_type 0 2731 298 2350 173 26 17 chr12 21249985 21250407 -122536048 + MSTB LTR MaLR 1 426 0 15739 145 36 12 chr12 21250407 21250713 -122535742 - Tigger4(Zombi) DNA MER2_type -2433 298 1 928 192 0 0 chr12 21250778 21250950 -122535505 - AluJb SINE Alu 0 305 134 23 54 0 0 chr12 21251139 21251176 -122535279 + AT_rich Low_complexity Low_complexity 1 37 0 2156 133 32 3 chr12 21251191 21251536 -122534919 + THE1A LTR MaLR 1 355 0 11350 95 16 1 chr12 21251536 21253092 -122533363 + THE1A-int LTR MaLR 1 1580 0 2264 114 14 6 chr12 21253092 21253444 -122533011 + THE1A LTR MaLR 1 355 0 501 238 87 101 chr12 21253955 21254312 -122532143 - MLT2C1 LTR ERVL -1 396 45 * 596 227 13 32 chr12 21254173 21254327 -122532128 - MLT1E3 LTR MaLR -423 201 51 413 252 99 0 chr12 21254331 21254462 -122531993 - MLT2F LTR ERVL -519 144 1 4723 183 68 15 chr12 21254761 21255778 -122530677 - L1MC1 LINE L1 0 6333 5263 2498 69 0 0 chr12 21255802 21256107 -122530348 - AluY SINE Alu -6 305 1 21 0 0 0 chr12 21256143 21256164 -122530291 + AT_rich Low_complexity Low_complexity 1 21 0 1491 213 10 17 chr12 21256164 21256465 -122529990 - AluJo SINE Alu -13 299 1 25 0 0 0 chr12 21256606 21256631 -122529824 + AT_rich Low_complexity Low_complexity 1 25 0 1415 355 52 30 chr12 21257198 21258185 -122528270 + HERV16 LTR ERVL 3 1010 -3986 7122 168 42 8 chr12 21258247 21260547 -122525908 - L1MA4 LINE L1 -7 6475 4102 4639 223 33 33 chr12 21260540 21262053 -122524402 - L1MA4 LINE L1 -3841 2487 974 * 2357 150 57 8 chr12 21262053 21262454 -122524001 - MSTA LTR MaLR 0 428 8 5667 162 13 17 chr12 21262469 21263452 -122523003 - L1MA4 LINE L1 -4349 979 1 1176 218 33 64 chr12 21263455 21263785 -122522670 - MLT1A1 LTR MaLR -45 320 1 634 320 79 67 chr12 21264174 21264805 -122521650 + HERV16 LTR ERVL 1321 1959 -3037 1523 332 187 26 chr12 21265341 21265398 -122521057 + L2 LINE L2 1806 1852 -1461 2227 126 70 34 chr12 21265398 21265811 -122520644 - MSTA LTR MaLR 0 428 1 1523 332 187 26 chr12 21265811 21267040 -122519415 + L2 LINE L2 1852 3312 -1 221 314 8 51 chr12 21267495 21267613 -122518842 + MIR SINE MIR 86 198 -64 225 263 0 18 chr12 21267695 21267752 -122518703 + MIR SINE MIR 21 76 -186 242 121 0 0 chr12 21267927 21267960 -122518495 + MIR SINE MIR 114 146 -116 223 211 0 0 chr12 21267931 21267969 -122518486 + MIR3 SINE MIR 119 156 -52 * 26 0 0 0 chr12 21270266 21270292 -122516163 + AT_rich Low_complexity Low_complexity 1 26 0 388 338 27 27 chr12 21270396 21270615 -122515840 + L2 LINE L2 1599 1817 -1497 402 378 50 8 chr12 21270869 21271131 -122515324 - MLT1K LTR MaLR -165 423 151 276 336 56 8 chr12 21271278 21271403 -122515052 - MIR SINE MIR -130 132 2 563 165 21 0 chr12 21271432 21271529 -122514926 + AluJ/FLAM SINE Alu 2 100 -212 393 182 10 125 chr12 21271630 21271822 -122514633 + FAM SINE Alu 4 173 -2 201 184 0 41 chr12 21272295 21272344 -122514111 + L2 LINE L2 3267 3313 0 236 120 20 0 chr12 21272458 21272508 -122513947 + (CAGGA)n Simple_repeat Simple_repeat 5 55 0 508 180 5 53 chr12 21272515 21272704 -122513751 + G-rich Low_complexity Low_complexity 1 180 0 2967 165 88 2 chr12 21272775 21273297 -122513158 - HUERS-P2 LTR ERV1 -1487 1601 1035 1692 163 3 10 chr12 21273480 21273774 -122512681 - AluJb SINE Alu -12 300 9 187 157 39 0 chr12 21274513 21274564 -122511891 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 189 0 0 0 chr12 21274701 21274722 -122511733 + (GA)n Simple_repeat Simple_repeat 2 22 0 26 74 0 0 chr12 21276086 21276140 -122510315 + AT_rich Low_complexity Low_complexity 1 54 0 2484 199 47 34 chr12 21277584 21278238 -122508217 + L1ME1 LINE L1 4504 5166 -980 6292 225 21 24 chr12 21278250 21280975 -122505480 + L1PB3 LINE L1 4 1776 -5087 1280 117 11 5 chr12 21280999 21281187 -122505268 + AluSg/x SINE Alu 118 306 -6 12774 218 38 11 chr12 21281189 21282281 -122504174 + L1PB3 LINE L1 1791 2852 -4018 2271 83 3 10 chr12 21282281 21282414 -122504041 + AluY SINE Alu 1 133 -178 2338 94 13 0 chr12 21282414 21282722 -122503733 + AluSp SINE Alu 1 312 -1 2271 83 3 10 chr12 21282722 21282888 -122503567 + AluY SINE Alu 133 298 -13 12774 218 38 11 chr12 21282888 21286675 -122499780 + L1PB3 LINE L1 2852 6866 -4 1550 202 75 76 chr12 21286685 21286925 -122499530 + L1ME1 LINE L1 5152 5391 -775 1596 245 21 43 chr12 21286925 21287439 -122499016 + MLT1D LTR MaLR 3 505 0 1550 202 75 76 chr12 21287439 21287898 -122498557 + L1ME1 LINE L1 5391 5883 -283 358 42 21 0 chr12 21288835 21288883 -122497572 - MADE1 DNA Mariner -30 50 2 26 0 0 0 chr12 21290104 21290130 -122496325 + AT_rich Low_complexity Low_complexity 1 26 0 2103 115 6 22 chr12 21290239 21290552 -122495903 + AluSg SINE Alu 1 308 -2 229 320 100 31 chr12 21290631 21291021 -122495434 + L1ME LINE L1 5385 5801 -320 212 400 91 9 chr12 21291715 21291945 -122494510 + L2 LINE L2 111 359 -2955 730 308 116 11 chr12 21291970 21292350 -122494105 + LTR16A LTR ERVL 26 445 -5 631 285 45 0 chr12 21292356 21292535 -122493920 + HERV16 LTR ERVL 2 188 -4808 602 330 114 13 chr12 21292688 21293073 -122493382 + LTR16A LTR ERVL 1 424 -26 1426 170 49 59 chr12 21293963 21294269 -122492186 - AluJo SINE Alu -9 303 1 212 303 0 40 chr12 21294661 21294737 -122491718 - L2 LINE L2 -1834 1480 1408 2014 116 0 0 chr12 21295749 21296017 -122490438 - AluSx SINE Alu -8 304 37 229 346 89 34 chr12 21296441 21296620 -122489835 - L3 LINE CR1 -701 876 688 393 218 202 32 chr12 21297800 21297988 -122488467 - MIR SINE MIR -6 256 37 22 35 0 0 chr12 21298567 21298596 -122487859 + AT_rich Low_complexity Low_complexity 1 29 0 275 348 78 33 chr12 21299245 21299515 -122486940 - L2 LINE L2 -2482 832 551 384 364 18 12 chr12 21300336 21300501 -122485954 + MIR3 SINE MIR 15 180 -28 268 310 54 16 chr12 21300759 21300888 -122485567 - ERVL LTR ERVL -2046 3718 3585 477 226 31 92 chr12 21300947 21301114 -122485341 - MER112 DNA MER1_type -14 246 97 1681 165 7 37 chr12 21301114 21301434 -122485021 + AluSx SINE Alu 1 311 0 477 226 31 92 chr12 21301434 21301525 -122484930 - MER112 DNA MER1_type -163 97 2 946 341 40 17 chr12 21301527 21301696 -122484759 - ERVL LTR ERVL -2271 3493 3329 1520 50 0 0 chr12 21301696 21301878 -122484577 + AluY SINE Alu 119 300 -11 946 341 40 17 chr12 21301878 21302183 -122484272 - ERVL LTR ERVL -2435 3329 3008 741 276 45 39 chr12 21303135 21303561 -122482894 + L1MEc LINE L1 950 1476 -1014 2247 94 7 0 chr12 21303561 21303858 -122482597 + AluSq SINE Alu 1 299 -14 741 276 45 39 chr12 21303858 21304159 -122482296 + L1MEc LINE L1 1476 1774 -716 890 271 23 55 chr12 21304374 21304684 -122481771 - HsTC2c DNA Tc2 -3 726 427 647 287 116 39 chr12 21304688 21305965 -122480490 + L1MEc LINE L1 2378 3752 -2377 940 299 84 44 chr12 21305969 21307792 -122478663 + L1MEc LINE L1 4038 5934 -219 198 0 0 0 chr12 21308368 21308390 -122478065 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2618 45 3 0 chr12 21308404 21308713 -122477742 + AluY SINE Alu 1 310 -1 553 163 0 0 chr12 21308720 21308806 -122477649 - FRAM SINE Alu -57 119 34 758 158 0 8 chr12 21309059 21309192 -122477263 + FLAM_A SINE Alu 11 142 0 403 254 8 40 chr12 21309286 21309412 -122477043 + FLAM_A SINE Alu 13 134 -8 21 0 0 0 chr12 21309501 21309522 -122476933 + AT_rich Low_complexity Low_complexity 1 21 0 1829 187 6 8 chr12 21309989 21310347 -122476108 + L1MB3 LINE L1 5825 6181 -2 205 294 0 0 chr12 21310645 21310696 -122475759 + L3 LINE CR1 1077 1127 -450 233 214 36 0 chr12 21310709 21310765 -122475690 + HsTC2 DNA Tc2 29 86 -1812 211 294 64 19 chr12 21311293 21311503 -122474952 + L3 LINE CR1 1117 1390 -187 204 396 43 14 chr12 21311736 21311875 -122474580 + L3 LINE CR1 1428 1570 -7 1998 132 10 13 chr12 21313253 21313563 -122472892 + AluSg SINE Alu 1 309 -1 23 33 0 0 chr12 21313730 21313760 -122472695 + AT_rich Low_complexity Low_complexity 1 30 0 410 297 63 17 chr12 21314152 21314327 -122472128 - MIR SINE MIR -6 256 74 4914 168 71 31 chr12 21314417 21315891 -122470564 + L1MA9 LINE L1 4792 6312 0 198 0 0 0 chr12 21316623 21316645 -122469810 + (A)n Simple_repeat Simple_repeat 1 22 0 193 256 0 0 chr12 21316970 21317009 -122469446 - L2 LINE L2 -83 3230 3192 185 132 26 0 chr12 21317588 21317626 -122468829 + (TA)n Simple_repeat Simple_repeat 2 40 0 1920 119 44 7 chr12 21319023 21319316 -122467139 + AluSx SINE Alu 1 304 -8 251 369 5 56 chr12 21320244 21320439 -122466016 - L2 LINE L2 -665 2649 2465 309 275 221 0 chr12 21320447 21320596 -122465859 + MIR SINE MIR 37 218 -44 2383 62 0 37 chr12 21320756 21321077 -122465378 + AluY SINE Alu 3 311 0 2905 152 18 2 chr12 21322174 21322668 -122463787 + L1MB3 LINE L1 5682 6183 0 348 246 82 16 chr12 21323863 21323985 -122462470 + MIR SINE MIR 109 238 -24 * 390 278 110 48 chr12 21323978 21324187 -122462268 - MIR SINE MIR -3 259 38 195 339 0 0 chr12 21324200 21324256 -122462199 - L3 LINE CR1 -463 1114 1059 493 307 58 70 chr12 21324308 21324637 -122461818 - L3 LINE CR1 -641 936 612 720 253 0 35 chr12 21325034 21325204 -122461251 + FRAM SINE Alu 1 164 -2 461 122 21 64 chr12 21325446 21325634 -122460821 + (TA)n Simple_repeat Simple_repeat 1 180 0 227 266 229 0 chr12 21325783 21325892 -122460563 - MIR SINE MIR 0 262 129 683 239 122 32 chr12 21326004 21326192 -122460263 - MER20 DNA MER1_type -14 205 1 4054 130 47 14 chr12 21327305 21327444 -122459011 - L1MA4 LINE L1 -5 6295 6162 2134 123 25 38 chr12 21327444 21327811 -122458644 + THE1B LTR MaLR 1 362 -2 4054 130 47 14 chr12 21327811 21328380 -122458075 - L1MA4 LINE L1 -138 6162 5564 592 246 0 0 chr12 21328391 21328558 -122457897 - FLAM_A SINE Alu 0 168 2 247 333 72 13 chr12 21328754 21328907 -122457548 + L3 LINE CR1 836 997 -580 194 360 50 29 chr12 21329061 21329200 -122457255 + L3 LINE CR1 1018 1159 -418 206 303 15 45 chr12 21329205 21329271 -122457184 + L3 LINE CR1 1434 1497 -80 388 174 22 0 chr12 21329522 21329614 -122456841 + (TA)n Simple_repeat Simple_repeat 1 94 0 276 252 96 15 chr12 21332906 21333041 -122453414 - L1ME4a LINE L1 0 6121 5976 4937 130 20 4 chr12 21333504 21334312 -122452143 + L1P LINE L1 4480 5300 -846 751 153 8 0 chr12 21334312 21334436 -122452019 + AluSq/x SINE Alu 1 125 -188 722 58 16 50 chr12 21334452 21334573 -122451882 + L1P LINE L1 5293 5409 -765 255 123 48 34 chr12 21334727 21334873 -122451582 + (TA)n Simple_repeat Simple_repeat 2 149 0 209 182 73 0 chr12 21334879 21334934 -122451521 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 267 145 65 22 chr12 21334941 21335079 -122451376 + (TATAG)n Simple_repeat Simple_repeat 2 145 0 39 50 0 0 chr12 21335084 21335144 -122451311 + AT_rich Low_complexity Low_complexity 1 60 0 625 194 78 2 chr12 21335466 21335643 -122450812 - MLT1D LTR MaLR 0 505 286 231 79 26 0 chr12 21335649 21335687 -122450768 + L1MA9 LINE L1 6265 6303 -9 300 318 11 0 chr12 21336115 21336203 -122450252 + L2 LINE L2 3178 3266 -6 195 391 29 22 chr12 21336781 21336919 -122449536 - L2 LINE L2 -236 3036 2898 223 292 15 0 chr12 21337412 21337477 -122448978 - MIR SINE MIR 0 262 197 550 277 130 12 chr12 21338891 21339144 -122447311 + L2 LINE L2 3023 3305 -8 522 330 106 13 chr12 21339223 21339459 -122446996 - MIR SINE MIR 0 262 5 225 336 112 9 chr12 21339672 21339788 -122446667 - MIR3 SINE MIR -8 200 73 574 353 65 14 chr12 21340351 21340790 -122445665 - L2 LINE L2 -147 3166 2701 1263 203 49 36 chr12 21340805 21341260 -122445195 + MLT2B1 LTR ERVL 4 512 -8 880 132 0 0 chr12 21341710 21341846 -122444609 + L1PA10 LINE L1 6027 6162 -6 27672 127 16 74 chr12 21341962 21347267 -122439188 + L1P LINE L1 1 5000 -1146 7352 230 55 44 chr12 21347887 21350764 -122435691 + L1MC/D LINE L1 2636 5530 -745 2292 124 14 0 chr12 21350765 21351129 -122435326 - L1MA3 LINE L1 0 6305 5937 192 167 0 28 chr12 21351390 21351426 -122435029 - MIR SINE MIR -63 145 111 1767 175 34 0 chr12 21351915 21352206 -122434249 + AluJb SINE Alu 4 304 -8 386 269 13 20 chr12 21352722 21352871 -122433584 + HAL1b LINE L1 724 871 -477 866 260 86 27 chr12 21353077 21353369 -122433086 + Charlie1a DNA MER1_type 1 309 -1146 6965 155 40 2 chr12 21353375 21354521 -122431934 + L1M1 LINE L1 18 1207 -6358 * 12381 151 37 23 chr12 21354519 21358649 -122427806 + L1P2 LINE L1 2477 7146 -428 6379 81 24 0 chr12 21358751 21359884 -122426571 + L1PA4 LINE L1 4996 6151 -4 6311 142 12 17 chr12 21359887 21361227 -122425228 + L1MA3 LINE L1 4973 6305 0 3962 233 65 21 chr12 21361231 21362343 -122424112 + Charlie1a DNA MER1_type 293 1453 -2 877 177 143 51 chr12 21362523 21362817 -122423638 - L1MDa LINE L1 -4710 1830 1510 682 198 0 0 chr12 21362815 21362941 -122423514 - L1MDa LINE L1 -6400 140 15 * 240 241 12 48 chr12 21362941 21363024 -122423431 + L1 LINE L1 4890 4969 -1177 2149 110 10 3 chr12 21363056 21363364 -122423091 - AluSq SINE Alu -3 310 1 23 33 0 0 chr12 21363370 21363400 -122423055 + AT_rich Low_complexity Low_complexity 1 30 0 307 286 25 80 chr12 21363404 21363603 -122422852 + L1MC/D LINE L1 5028 5215 -931 839 275 40 40 chr12 21363642 21363988 -122422467 + L1MC/D LINE L1 5255 5600 -2208 308 280 60 0 chr12 21363989 21364089 -122422366 + L1MC/D LINE L1 5635 5740 -2068 290 116 74 8 chr12 21365244 21365365 -122421090 + GA-rich Low_complexity Low_complexity 1 129 0 297 75 0 0 chr12 21365738 21365778 -122420677 + (CA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr12 21365783 21365804 -122420651 + AT_rich Low_complexity Low_complexity 1 21 0 194 304 18 0 chr12 21366584 21366640 -122419815 - L2 LINE L2 0 3272 3216 185 353 101 8 chr12 21366697 21366816 -122419639 + MIR SINE MIR 16 145 -63 234 0 0 0 chr12 21368121 21368147 -122418308 + (CA)n Simple_repeat Simple_repeat 1 26 0 4275 97 3 7 chr12 21368432 21369038 -122417417 + L1P3 LINE L1 755 1358 -5103 200 239 22 0 chr12 21369536 21369582 -122416873 - L2 LINE L2 -12 3301 3255 193 258 0 11 chr12 21369648 21369830 -122416625 + (TA)n Simple_repeat Simple_repeat 1 180 0 469 342 27 16 chr12 21369834 21370018 -122416437 + L3 LINE CR1 1041 1226 -351 21 89 0 0 chr12 21370251 21370307 -122416148 + AT_rich Low_complexity Low_complexity 1 56 0 22 56 0 0 chr12 21370418 21370454 -122416001 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr12 21370591 21370629 -122415826 + AT_rich Low_complexity Low_complexity 1 38 0 38 51 0 0 chr12 21371062 21371121 -122415334 + AT_rich Low_complexity Low_complexity 1 59 0 306 217 0 0 chr12 21371162 21371231 -122415224 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 2437 67 0 3 chr12 21371231 21371528 -122414927 - AluY SINE Alu -15 296 1 220 35 0 0 chr12 21371763 21371792 -122414663 - L2 LINE L2 0 3313 3285 * 4182 301 156 22 chr12 21371789 21373272 -122413183 - L2 LINE L2 -572 2742 884 2832 14 26 0 chr12 21373272 21373622 -122412833 + L1PA2 LINE L1 5794 6152 -3 4182 301 156 22 chr12 21373622 21374274 -122412181 - L2 LINE L2 -2430 884 321 225 65 0 0 chr12 21374317 21374348 -122412107 + (TC)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr12 21374348 21374372 -122412083 + (CA)n Simple_repeat Simple_repeat 1 24 0 343 129 0 29 chr12 21374524 21374594 -122411861 + (TCC)n Simple_repeat Simple_repeat 3 70 0 406 329 58 13 chr12 21374595 21374820 -122411635 - LTR16C LTR ERVL -50 441 207 902 176 0 0 chr12 21374865 21375024 -122411431 - L1PB4 LINE L1 0 6156 5998 530 295 13 7 chr12 21375050 21375199 -122411256 + L2 LINE L2 680 829 -2485 279 261 94 36 chr12 21375344 21375482 -122410973 + MLT1L LTR MaLR 231 451 -159 1100 274 97 69 chr12 21375671 21375932 -122410523 + L1MEc LINE L1 1656 1908 -4632 2012 135 7 3 chr12 21375932 21376228 -122410227 + AluSq SINE Alu 1 297 -16 1100 274 97 69 chr12 21376228 21377640 -122408815 + L1MEc LINE L1 1908 3381 -3159 805 283 6 0 chr12 21377649 21377826 -122408629 - MER5A DNA MER1_type 0 189 12 30 45 0 0 chr12 21377855 21377899 -122408556 + AT_rich Low_complexity Low_complexity 1 44 0 617 162 0 9 chr12 21377947 21378052 -122408403 + Tigger2 DNA MER2_type 2 105 -2613 11895 134 56 96 chr12 21378153 21378826 -122407629 + Tigger2 DNA MER2_type 395 1094 -1624 1475 141 18 114 chr12 21378826 21378965 -122407490 + AluJb SINE Alu 1 91 -211 771 112 0 0 chr12 21378965 21379081 -122407374 + (TA)n Simple_repeat Simple_repeat 1 116 0 1475 141 18 114 chr12 21379081 21379275 -122407180 + AluJb SINE Alu 91 302 0 11895 134 56 96 chr12 21379275 21379537 -122406918 + Tigger2 DNA MER2_type 1094 1365 -1353 775 235 6 6 chr12 21379537 21379703 -122406752 - FRAM SINE Alu -10 166 1 11895 134 56 96 chr12 21379703 21381023 -122405432 + Tigger2 DNA MER2_type 1365 2718 0 671 280 101 3 chr12 21381193 21381489 -122404966 + L2 LINE L2 1181 1505 -1809 814 188 80 6 chr12 21381566 21381742 -122404713 + MER5A DNA MER1_type 1 189 0 2025 186 23 30 chr12 21382069 21382123 -122404332 - MLT1C LTR MaLR 0 467 414 1325 81 63 18 chr12 21382123 21382345 -122404110 + L1PA10 LINE L1 5937 6168 0 2025 186 23 30 chr12 21382345 21382725 -122403730 - MLT1C LTR MaLR -53 414 36 21 36 0 0 chr12 21383159 21383187 -122403268 + AT_rich Low_complexity Low_complexity 1 28 0 765 246 25 20 chr12 21383257 21383533 -122402922 - Charlie7 DNA MER1_type -2078 534 217 373 274 9 9 chr12 21383576 21383689 -122402766 + GA-rich Low_complexity Low_complexity 2 114 0 24 0 0 0 chr12 21386470 21386494 -122399961 + AT_rich Low_complexity Low_complexity 1 24 0 2289 85 20 7 chr12 21386563 21386688 -122399767 + AluY SINE Alu 1 123 -188 353 22 22 0 chr12 21386688 21386734 -122399721 + (CA)n Simple_repeat Simple_repeat 2 48 0 2289 85 20 7 chr12 21386734 21386913 -122399542 + AluY SINE Alu 123 309 -2 270 0 0 0 chr12 21387039 21387069 -122399386 + (A)n Simple_repeat Simple_repeat 1 30 0 2383 75 3 3 chr12 21388011 21388316 -122398139 - AluY SINE Alu -6 305 1 238 295 48 0 chr12 21389637 21389742 -122396713 + MIR SINE MIR 37 152 -62 220 217 277 12 chr12 21389888 21389971 -122396484 + MIR3 SINE MIR 2 106 -102 25 0 0 0 chr12 21391248 21391273 -122395182 + AT_rich Low_complexity Low_complexity 1 25 0 418 308 99 16 chr12 21391291 21391544 -122394911 + L1M4 LINE L1 4748 5021 -1125 6218 246 158 15 chr12 21391544 21393758 -122392697 + L1PA12 LINE L1 6 3071 -4510 595 167 61 122 chr12 21393766 21394029 -122392426 + L1MA9 LINE L1 6061 6307 -5 587 190 0 0 chr12 21394054 21394154 -122392301 + FLAM_A SINE Alu 20 119 -23 220 262 0 16 chr12 21394519 21394580 -122391875 - MER5A DNA MER1_type 0 189 130 2107 127 0 22 chr12 21396093 21396408 -122390047 + AluSc SINE Alu 1 308 -1 367 227 57 11 chr12 21397718 21397806 -122388649 - L2 LINE L2 -14 3299 3208 22 0 0 0 chr12 21397952 21397974 -122388481 + AT_rich Low_complexity Low_complexity 1 22 0 609 81 0 0 chr12 21398814 21398901 -122387554 + L1PA3 LINE L1 6069 6155 0 352 283 57 9 chr12 21398959 21399065 -122387390 - L2 LINE L2 -2 3311 3201 707 343 29 0 chr12 21399511 21399791 -122386664 + MLT1J LTR MaLR 224 511 0 483 259 177 6 chr12 21401423 21401581 -122384874 + MIR SINE MIR 2 186 -76 269 179 60 0 chr12 21402866 21402933 -122383522 + L1MA5A LINE L1 6224 6294 -3 785 238 29 0 chr12 21403866 21404038 -122382417 + MER45A DNA AcHobo 1 177 -1 23 54 0 0 chr12 21404179 21404216 -122382239 + AT_rich Low_complexity Low_complexity 1 37 0 203 269 19 0 chr12 21404334 21404386 -122382069 + CT-rich Low_complexity Low_complexity 3 55 0 324 374 89 0 chr12 21404389 21404512 -122381943 - L2 LINE L2 -23 3249 3116 199 398 56 64 chr12 21405083 21405425 -122381030 - L2 LINE L2 -15 3257 2919 269 192 19 0 chr12 21405960 21406012 -122380443 - L3 LINE CR1 -2 1575 1523 2180 102 0 3 chr12 21407811 21408157 -122378298 - AluSx SINE Alu 0 345 1 206 375 41 66 chr12 21408887 21408990 -122377465 + L2 LINE L2 2360 2464 -850 1264 226 107 3 chr12 21408990 21409317 -122377138 + MLT1A1 LTR MaLR 5 365 0 206 375 41 66 chr12 21409317 21409456 -122376999 + L2 LINE L2 2464 2596 -718 333 0 0 0 chr12 21409737 21409774 -122376681 + (CA)n Simple_repeat Simple_repeat 2 38 0 1697 175 110 22 chr12 21410364 21410828 -122375627 + MLT2A2 LTR ERVL 1 520 -34 858 142 53 60 chr12 21410864 21411166 -122375289 + HERV9 LTR ERV1 840 1139 -5757 294 213 0 0 chr12 21411167 21411228 -122375227 + HERV9 LTR ERV1 7504 7564 -835 * 4795 127 16 127 chr12 21411224 21413382 -122373073 + pTR5 LTR ERV1 504 2606 0 350 0 0 0 chr12 21413382 21413421 -122373034 + MLT2A2 LTR ERVL 415 453 0 2342 114 114 5 chr12 21413598 21413984 -122372471 - MSTA LTR MaLR 0 428 1 2081 181 58 29 chr12 21414412 21414860 -122371595 - LOR1b LTR ERV1 0 461 1 249 345 118 20 chr12 21414866 21415069 -122371386 + MIR SINE MIR 25 247 -15 289 339 16 0 chr12 21415142 21415263 -122371192 - L2 LINE L2 -223 3049 2927 231 81 0 27 chr12 21415269 21415306 -122371149 - LTR28 LTR ERV1 0 1020 985 510 224 238 14 chr12 21416282 21416492 -122369963 + MIR SINE MIR 3 259 -3 5369 137 11 16 chr12 21417433 21418474 -122367981 + L1PA16 LINE L1 5127 6162 -4 24 32 0 0 chr12 21420014 21420045 -122366410 + AT_rich Low_complexity Low_complexity 1 31 0 1398 103 0 0 chr12 21421470 21421654 -122364801 - AluSg/x SINE Alu -18 294 111 1497 77 5 0 chr12 21421876 21422071 -122364384 - AluSg/x SINE Alu -6 306 111 2300 48 0 64 chr12 21422293 21422607 -122363848 - AluY SINE Alu -17 294 1 491 295 111 25 chr12 21423189 21423433 -122363022 - MLT1K LTR MaLR -2 586 322 239 174 22 0 chr12 21423497 21423543 -122362912 - MLT1K LTR MaLR -359 229 183 249 250 0 0 chr12 21424422 21424470 -122361985 + MIR SINE MIR 84 131 -77 525 268 117 11 chr12 21424598 21424777 -122361678 - MLT1I LTR MaLR -17 392 195 659 225 104 12 chr12 21425469 21425642 -122360813 + MER5A DNA MER1_type 1 189 0 324 48 0 0 chr12 21428185 21428227 -122358228 + (CA)n Simple_repeat Simple_repeat 1 42 0 2325 146 68 2 chr12 21428448 21428845 -122357610 - MSTA LTR MaLR 0 428 6 264 196 54 0 chr12 21429259 21429315 -122357140 + MER20B DNA MER1_type 723 781 -2 230 267 0 0 chr12 21430066 21430126 -122356329 + 5S rRNA rRNA 31 90 -31 1116 15 0 0 chr12 21431554 21431684 -122354771 + L1PA3 LINE L1 6026 6155 0 1689 140 67 0 chr12 21432927 21433214 -122353241 + MER7A DNA MER2_type 8 312 -34 316 137 0 0 chr12 21433206 21433257 -122353198 + MSTB2 LTR MaLR 407 457 0 * 1078 299 62 76 chr12 21433257 21433672 -122352783 - L2 LINE L2 -27 3286 2867 650 228 88 16 chr12 21433672 21433865 -122352590 - MER3 DNA MER1_type -1 208 2 1078 299 62 76 chr12 21433865 21434460 -122351995 - L2 LINE L2 -446 2867 2291 21 36 0 0 chr12 21435174 21435202 -122351253 + AT_rich Low_complexity Low_complexity 1 28 0 184 153 0 51 chr12 21437037 21437096 -122349359 + CT-rich Low_complexity Low_complexity 4 59 0 225 154 0 0 chr12 21437752 21437791 -122348664 + (CGTG)n Simple_repeat Simple_repeat 3 41 0 270 73 0 0 chr12 21438959 21439000 -122347455 + (T)n Simple_repeat Simple_repeat 1 41 0 28 29 0 0 chr12 21440386 21440421 -122346034 + AT_rich Low_complexity Low_complexity 1 35 0 191 235 0 15 chr12 21445203 21445271 -122341184 + (TG)n Simple_repeat Simple_repeat 1 67 0 713 363 81 78 chr12 21445372 21445694 -122340761 - MER33 DNA MER1_type -1 323 1 21 57 0 0 chr12 21448999 21449034 -122337421 + AT_rich Low_complexity Low_complexity 1 35 0 338 328 11 101 chr12 21450241 21450430 -122336025 - MER5A DNA MER1_type -2 187 16 379 223 0 89 chr12 21450637 21450749 -122335706 + MIR SINE MIR 88 189 -73 198 298 53 61 chr12 21450834 21450965 -122335490 + MIR SINE MIR 98 227 -35 556 276 138 40 chr12 21451907 21452233 -122334222 - L2 LINE L2 -462 2852 2495 2970 123 0 2 chr12 21502659 21503082 -122283373 - HERVH LTR ERV1 -2804 4909 4488 3372 100 4 4 chr12 21503084 21503573 -122282882 - HERVH LTR ERV1 -3720 3993 3505 904 136 27 0 chr12 21503577 21503724 -122282731 - HERVH LTR ERV1 -4423 3290 3140 * 15136 138 16 14 chr12 21503703 21506380 -122280075 - HERVH LTR ERV1 -4718 2995 1 3630 64 2 7 chr12 21506382 21506832 -122279623 - LTR7 LTR ERV1 -2 448 1 962 45 0 0 chr12 21506832 21506944 -122279511 - L1P LINE L1 -6030 116 5 2596 196 31 21 chr12 21507170 21507752 -122278703 - L1 LINE L1 -1975 4171 3584 2582 231 20 27 chr12 21507798 21508528 -122277927 - L1 LINE L1 -3128 3018 2294 2246 82 26 10 chr12 21508528 21508832 -122277623 - AluSc SINE Alu 0 309 1 783 227 0 27 chr12 21508849 21508999 -122277456 - FRAM SINE Alu -30 146 1 22 35 0 0 chr12 21509466 21509495 -122276960 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr12 21509504 21509534 -122276921 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 21510012 21510033 -122276422 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr12 21510558 21510593 -122275862 + AT_rich Low_complexity Low_complexity 1 35 0 333 272 125 41 chr12 21510848 21511320 -122275135 + L1 LINE L1 2759 3308 -2838 575 138 0 0 chr12 21511411 21511520 -122274935 + L1P LINE L1 5254 5362 -804 2303 71 0 0 chr12 21511523 21511823 -122274632 + AluY SINE Alu 1 300 0 241 289 48 10 chr12 21511987 21512091 -122274364 + L1 LINE L1 3589 3696 -2450 342 0 0 0 chr12 21512370 21512408 -122274047 + (T)n Simple_repeat Simple_repeat 1 38 0 982 219 0 5 chr12 21513047 21513243 -122273212 + HERVH LTR ERV1 4955 5149 -2564 1155 128 88 10 chr12 21513244 21513448 -122273007 + HERVH LTR ERV1 5600 5819 -1894 2548 87 45 13 chr12 21513448 21513826 -122272629 + HERVH LTR ERV1 7324 7713 0 3411 69 2 7 chr12 21513826 21514276 -122272179 + LTR7 LTR ERV1 1 448 -2 43131 45 3 2 chr12 21514278 21520320 -122266135 + L1PA3 LINE L1 112 6155 0 4509 181 56 38 chr12 21520314 21521444 -122265011 + L1 LINE L1 4156 5305 -841 * 1765 132 27 14 chr12 21521457 21521753 -122264702 - L1MA4A LINE L1 -335 5968 5669 6417 130 124 107 chr12 21521817 21523644 -122262811 - pTR5 LTR ERV1 0 8399 389 15560 25 2 0 chr12 21523744 21526350 -122260105 + L1PA3 LINE L1 3544 6153 -2 3188 170 63 5 chr12 21526370 21527035 -122259420 - L1 LINE L1 -1548 5300 4597 7628 186 54 39 chr12 21527057 21528085 -122258370 - L1 LINE L1 -2607 4241 3230 296 77 0 0 chr12 21528085 21528124 -122258331 + U2 snRNA snRNA 4 42 -146 7628 186 54 39 chr12 21528124 21528989 -122257466 - L1 LINE L1 -3618 3230 2379 2449 73 0 0 chr12 21528989 21529289 -122257166 - AluY SINE Alu -11 300 1 7628 186 54 39 chr12 21529289 21529944 -122256511 - L1 LINE L1 -4469 2379 1735 2196 101 0 0 chr12 21529944 21530230 -122256225 - AluY SINE Alu -6 305 20 7628 186 54 39 chr12 21530230 21530932 -122255523 - L1 LINE L1 -5113 1735 2 2352 88 0 3 chr12 21531733 21532038 -122254417 - AluY SINE Alu -7 304 1 293 70 42 28 chr12 21532343 21532414 -122254041 + (TATAA)n Simple_repeat Simple_repeat 1 72 0 21 0 0 0 chr12 21532498 21532519 -122253936 + AT_rich Low_complexity Low_complexity 1 21 0 396 0 0 0 chr12 21533317 21533361 -122253094 + (TG)n Simple_repeat Simple_repeat 1 44 0 182 62 31 0 chr12 21534210 21534242 -122252213 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 32 91 0 0 chr12 21536515 21536603 -122249852 + AT_rich Low_complexity Low_complexity 1 88 0 2266 105 13 0 chr12 21537621 21537926 -122248529 + AluSp SINE Alu 1 309 -4 24 32 0 0 chr12 21538452 21538483 -122247972 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr12 21540405 21540427 -122246028 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr12 21541283 21541305 -122245150 + (A)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr12 21541745 21541767 -122244688 + AT_rich Low_complexity Low_complexity 1 22 0 32 67 0 0 chr12 21541824 21541884 -122244571 + AT_rich Low_complexity Low_complexity 1 60 0 279 0 0 0 chr12 21542533 21542564 -122243891 + (CA)n Simple_repeat Simple_repeat 1 31 0 953 35 0 0 chr12 21543110 21543226 -122243229 - L1PA4 LINE L1 -14 6141 6026 362 343 43 39 chr12 21543261 21543541 -122242914 + ERVL LTR ERVL 5043 5323 -441 335 209 55 18 chr12 21543672 21543782 -122242673 - L1MC5 LINE L1 -48 7913 7800 212 290 10 0 chr12 21543803 21543903 -122242552 + (TA)n Simple_repeat Simple_repeat 2 102 0 1063 209 36 111 chr12 21543934 21544521 -122241934 - L1MC5 LINE L1 -247 7714 7172 1463 141 12 8 chr12 21544525 21544773 -122241682 + L1PA16 LINE L1 5911 6159 -7 801 228 111 96 chr12 21545282 21545892 -122240563 - L1MC5 LINE L1 -785 7176 6618 1168 305 114 0 chr12 21545984 21546371 -122240084 - L2 LINE L2 -1093 2221 1791 762 331 141 14 chr12 21546372 21546868 -122239587 - L2 LINE L2 -1766 1548 990 1569 233 70 12 chr12 21546873 21547302 -122239153 + MLT1C LTR MaLR 6 459 -8 604 248 23 8 chr12 21547304 21547437 -122239018 + MER58B DNA MER1_type 205 339 -2 22 0 0 0 chr12 21547966 21547988 -122238467 + AT_rich Low_complexity Low_complexity 1 22 0 236 324 3 83 chr12 21548014 21548171 -122238284 - MIR SINE MIR -52 210 66 185 62 0 31 chr12 21548549 21548581 -122237874 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 301 330 92 12 chr12 21549333 21549506 -122236949 + MIR SINE MIR 15 201 -61 311 167 0 0 chr12 21550779 21550833 -122235622 - MER103 DNA DNA -94 72 19 480 297 151 25 chr12 21550896 21551253 -122235202 - L1 LINE L1 -2111 4035 3634 229 213 71 85 chr12 21551734 21551875 -122234580 - HAL1 LINE L1 -79 2428 2290 21 0 0 0 chr12 21552854 21552875 -122233580 + AT_rich Low_complexity Low_complexity 1 21 0 230 317 50 0 chr12 21553316 21553376 -122233079 - L2 LINE L2 -12 3301 3239 1299 203 88 21 chr12 21553469 21553809 -122232646 - L1M2 LINE L1 -678 5634 5272 1235 51 6 0 chr12 21553820 21553978 -122232477 - L1PA5 LINE L1 -3 6151 5993 358 213 0 0 chr12 21555888 21555949 -122230506 - MER5A DNA MER1_type -118 71 11 22 0 0 0 chr12 21556219 21556241 -122230214 + AT_rich Low_complexity Low_complexity 1 22 0 601 320 54 24 chr12 21556637 21557316 -122229139 - L1M2 LINE L1 -1832 4314 3596 318 26 0 0 chr12 21557316 21557355 -122229100 + (TG)n Simple_repeat Simple_repeat 1 39 0 185 62 0 31 chr12 21557592 21557624 -122228831 + (TA)n Simple_repeat Simple_repeat 1 31 0 408 313 34 14 chr12 21558293 21558440 -122228015 + MER5A DNA MER1_type 1 150 -39 193 270 32 16 chr12 21560319 21560382 -122226073 - MIR3 SINE MIR -2 206 143 467 293 8 8 chr12 21560874 21561007 -122225448 + MIR SINE MIR 81 213 -49 218 260 16 134 chr12 21561309 21561436 -122225019 - L2 LINE L2 -18 3295 3184 1039 307 57 18 chr12 21561700 21562137 -122224318 - L2 LINE L2 -48 3265 2812 254 252 402 0 chr12 21562151 21562278 -122224177 - MER5A DNA MER1_type -3 186 9 760 230 28 6 chr12 21562287 21562465 -122223990 - L2 LINE L2 -517 2797 2616 22 35 0 0 chr12 21562888 21562917 -122223538 + AT_rich Low_complexity Low_complexity 1 29 0 2918 9 0 0 chr12 21562967 21563285 -122223170 + AluYb8 SINE Alu 1 318 0 1288 34 0 0 chr12 21563563 21563712 -122222743 - AluY SINE Alu 0 311 163 1393 107 70 5 chr12 21564339 21564554 -122221901 + MER30 DNA MER1_type 1 229 -1 2749 10 0 0 chr12 21566446 21566746 -122219709 - AluY SINE Alu -11 300 1 967 188 61 0 chr12 21567049 21567246 -122219209 + MER3 DNA MER1_type 1 209 0 293 351 9 0 chr12 21567586 21567700 -122218755 + MIR SINE MIR 145 259 -3 22 0 0 0 chr12 21570721 21570743 -122215712 + AT_rich Low_complexity Low_complexity 1 22 0 393 22 0 0 chr12 21571013 21571059 -122215396 + (T)n Simple_repeat Simple_repeat 1 46 0 247 250 118 96 chr12 21572072 21572208 -122214247 - L2 LINE L2 0 3313 3175 11425 178 16 29 chr12 21572949 21573133 -122213322 + Tigger1 DNA MER2_type 1 186 -2232 303 28 0 0 chr12 21573133 21573169 -122213286 + (TTA)n Simple_repeat Simple_repeat 1 36 0 11425 178 16 29 chr12 21573169 21574787 -122211668 + Tigger1 DNA MER2_type 186 1780 -638 2488 62 3 0 chr12 21574787 21575091 -122211364 + AluSp SINE Alu 1 305 -8 11425 178 16 29 chr12 21575091 21575722 -122210733 + Tigger1 DNA MER2_type 1780 2418 0 231 192 55 55 chr12 21578391 21578464 -122207991 - L1ME2 LINE L1 -9 6155 6083 369 0 0 0 chr12 21578483 21578524 -122207931 + (TA)n Simple_repeat Simple_repeat 2 42 0 234 0 0 0 chr12 21578524 21578550 -122207905 + (TG)n Simple_repeat Simple_repeat 2 27 0 1074 277 52 6 chr12 21578555 21578918 -122207537 - L1ME3 LINE L1 -93 6069 5693 38 68 0 0 chr12 21578918 21578991 -122207464 + AT_rich Low_complexity Low_complexity 1 73 0 340 161 83 12 chr12 21579005 21579173 -122207282 + (TA)n Simple_repeat Simple_repeat 1 180 0 313 161 77 19 chr12 21579097 21579252 -122207203 + (TTATA)n Simple_repeat Simple_repeat 1 164 0 * 38 75 0 0 chr12 21579256 21579336 -122207119 + AT_rich Low_complexity Low_complexity 1 80 0 247 179 24 32 chr12 21579340 21579463 -122206992 + (TATAA)n Simple_repeat Simple_repeat 3 124 0 214 198 62 10 chr12 21579475 21579571 -122206884 + (TTATA)n Simple_repeat Simple_repeat 3 103 0 35 41 0 0 chr12 21579685 21579734 -122206721 + AT_rich Low_complexity Low_complexity 1 49 0 776 275 27 9 chr12 21579740 21579962 -122206493 - L1ME3 LINE L1 -526 5636 5411 239 302 121 13 chr12 21580132 21580281 -122206174 + MIR SINE MIR 92 256 -6 22 0 0 0 chr12 21580752 21580774 -122205681 + AT_rich Low_complexity Low_complexity 1 22 0 5373 168 14 17 chr12 21580774 21581569 -122204886 - L1PA16 LINE L1 -7 6159 5359 2380 46 0 0 chr12 21581569 21581880 -122204575 - AluY SINE Alu 0 311 1 5373 168 14 17 chr12 21581880 21582414 -122204041 - L1PA16 LINE L1 -807 5359 4825 26 64 0 0 chr12 21582928 21582975 -122203480 + AT_rich Low_complexity Low_complexity 1 47 0 1487 231 40 23 chr12 21584889 21585357 -122201098 - LTR22 LTR ERVK -4 454 1 596 274 14 14 chr12 21586004 21586150 -122200305 - MIR SINE MIR -105 157 12 476 270 170 35 chr12 21586281 21586511 -122199944 + MIR SINE MIR 2 262 0 264 283 85 19 chr12 21587521 21587627 -122198828 + MIR SINE MIR 118 230 -32 430 318 74 5 chr12 21588814 21589003 -122197452 - MARNA DNA Mariner -43 543 342 247 286 39 0 chr12 21589015 21589092 -122197363 - MARNA DNA Mariner -474 112 33 476 282 18 31 chr12 21589378 21589541 -122196914 + MIR3 SINE MIR 38 198 -10 272 359 33 0 chr12 21589929 21590021 -122196434 - L2 LINE L2 -30 3242 3148 227 343 127 12 chr12 21591536 21591702 -122194753 - MIR3 SINE MIR 0 208 24 1704 177 30 35 chr12 21591928 21592295 -122194160 - MLT1A1 LTR MaLR 0 365 1 221 250 0 0 chr12 21592673 21592721 -122193734 + T-rich Low_complexity Low_complexity 1 48 0 274 349 53 8 chr12 21592835 21592967 -122193488 - MIR SINE MIR -72 190 53 595 328 61 77 chr12 21593240 21594006 -122192449 - L2 LINE L2 -3 3310 2543 282 29 0 0 chr12 21594855 21594890 -122191565 + (TA)n Simple_repeat Simple_repeat 2 36 0 1981 157 24 8 chr12 21594986 21595355 -122191100 - THE1C LTR MaLR 0 375 1 1471 238 64 31 chr12 21595356 21596025 -122190430 - Charlie2 DNA MER1_type -4 2858 2168 195 42 0 0 chr12 21596597 21596621 -122189834 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2080 64 18 25 chr12 21596624 21596906 -122189549 - AluY SINE Alu -31 280 1 211 241 0 17 chr12 21597563 21597621 -122188834 + CT-rich Low_complexity Low_complexity 3 59 0 531 281 45 9 chr12 21597776 21597997 -122188458 + Charlie2a DNA MER1_type 611 839 -2023 29 28 0 0 chr12 21598034 21598070 -122188385 + AT_rich Low_complexity Low_complexity 1 36 0 1739 265 107 73 chr12 21598508 21599614 -122186841 + L1MC5 LINE L1 5254 6321 -1640 2309 109 0 0 chr12 21599614 21599925 -122186530 + AluSx SINE Alu 1 311 -1 1739 265 107 73 chr12 21599925 21601214 -122185241 + L1MC5 LINE L1 6321 7793 -168 1921 136 0 14 chr12 21601214 21601509 -122184946 + AluSx SINE Alu 1 291 -21 1739 265 107 73 chr12 21601509 21601637 -122184818 + L1MC5 LINE L1 7793 7915 -46 786 271 70 24 chr12 21601925 21602308 -122184147 - L1MC5 LINE L1 -86 7875 7475 1777 257 78 47 chr12 21602310 21603136 -122183319 - L1MC4 LINE L1 -2 8040 7190 386 281 111 28 chr12 21603349 21603594 -122182861 - Charlie8 DNA MER1_type -1010 1407 71 191 361 14 0 chr12 21603774 21603846 -122182609 - L2 LINE L2 -61 3211 3139 519 310 110 58 chr12 21604239 21604684 -122181771 - L2 LINE L2 -685 2629 2162 602 208 23 15 chr12 21605987 21606117 -122180338 + MER94 DNA DNA 1 131 -3 28 0 0 0 chr12 21606804 21606832 -122179623 + AT_rich Low_complexity Low_complexity 1 28 0 2427 73 0 0 chr12 21607620 21607920 -122178535 - AluY SINE Alu -11 300 1 229 222 185 0 chr12 21608381 21608462 -122177993 - MIR SINE MIR -115 147 52 383 210 81 66 chr12 21608910 21609021 -122177434 - FLAM_A SINE Alu -28 105 5 365 312 99 41 chr12 21610334 21610555 -122175900 - MIR SINE MIR -6 256 23 612 179 77 8 chr12 21610850 21610967 -122175488 - FLAM_A SINE Alu -8 125 1 351 252 29 0 chr12 21610977 21611080 -122175375 - HAL1 LINE L1 -144 2363 2258 309 267 22 67 chr12 21611170 21611305 -122175150 - HAL1b LINE L1 -471 877 749 342 0 0 0 chr12 21611403 21611441 -122175014 + (A)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr12 21611989 21612009 -122174446 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 427 199 54 5 chr12 21612009 21612195 -122174260 - AluY SINE Alu -31 280 86 461 270 72 65 chr12 21612640 21613098 -122173357 + L1MCa LINE L1 103 788 -5634 850 237 77 11 chr12 21613476 21613763 -122172692 + L1MCa LINE L1 1129 1434 -4989 7064 216 34 10 chr12 21614261 21616965 -122169490 + L1PA16 LINE L1 3404 6165 -1 9377 224 52 12 chr12 21616979 21620010 -122166445 + L1MA5A LINE L1 2627 5785 -512 694 71 36 0 chr12 21620010 21620122 -122166333 + (GAAA)n Simple_repeat Simple_repeat 1 116 0 5659 39 4 0 chr12 21620123 21620820 -122165635 - L1PA5 LINE L1 -1630 4516 3817 7262 37 8 1 chr12 21620820 21622439 -122164016 + L1PA5 LINE L1 4521 6145 -9 230 81 27 0 chr12 21622452 21622489 -122163966 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 1502 164 8 4 chr12 21622513 21622775 -122163680 + L1MA5A LINE L1 5797 6059 -238 7392 222 34 19 chr12 21622785 21624081 -122162374 + L1MA6 LINE L1 2116 3436 -2710 874 142 13 7 chr12 21624081 21624236 -122162219 + L1PB2 LINE L1 5990 6145 -6 7392 222 34 19 chr12 21624236 21624944 -122161511 + L1MA6 LINE L1 3436 4132 -2014 4863 173 43 27 chr12 21624942 21626559 -122159896 + L1MA6 LINE L1 4659 6285 -15 * 31 44 0 0 chr12 21626699 21626744 -122159711 + AT_rich Low_complexity Low_complexity 1 45 0 242 317 0 0 chr12 21626759 21626841 -122159614 + L1MC4 LINE L1 6615 6696 -1346 272 214 14 14 chr12 21626847 21626917 -122159538 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 188 338 95 0 chr12 21627018 21627092 -122159363 + MER5B DNA MER1_type 24 104 -74 231 36 0 0 chr12 21627612 21627640 -122158815 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 22 35 0 0 chr12 21627905 21627934 -122158521 + AT_rich Low_complexity Low_complexity 1 29 0 4678 208 56 6 chr12 21628839 21629936 -122156519 + L1MCa LINE L1 531 1682 -4744 * 39167 41 1 1 chr12 21629933 21634750 -122151705 + L1P LINE L1 2 4815 -1331 1038 182 11 0 chr12 21634750 21634932 -122151523 + L1MC1 LINE L1 6142 6330 -3 654 218 95 78 chr12 21635166 21635233 -122151222 - MLT1D LTR MaLR -82 423 359 2001 147 0 3 chr12 21635233 21635546 -122150909 - AluSx SINE Alu 0 312 1 654 218 95 78 chr12 21635546 21635721 -122150734 - MLT1D LTR MaLR -146 359 177 302 0 26 0 chr12 21635750 21635788 -122150667 + (CA)n Simple_repeat Simple_repeat 2 40 0 2295 81 0 0 chr12 21636022 21636317 -122150138 + AluY SINE Alu 1 295 -16 221 392 31 0 chr12 21636467 21636564 -122149891 + L3 LINE CR1 1422 1521 -56 329 300 62 24 chr12 21636626 21636836 -122149619 - L1MC4a LINE L1 -1870 5938 5721 2601 298 76 27 chr12 21637056 21637563 -122148892 - L1MC2 LINE L1 -11 6333 5769 1569 158 169 21 chr12 21637563 21637936 -122148519 + MSTA LTR MaLR 1 428 0 2601 298 76 27 chr12 21637936 21638243 -122148212 - L1MC2 LINE L1 -575 5769 5479 22 0 0 0 chr12 21638362 21638384 -122148071 + AT_rich Low_complexity Low_complexity 1 22 0 1724 134 21 3 chr12 21638400 21638690 -122147765 - L1PA15 LINE L1 -2 6163 5869 1772 153 0 0 chr12 21638690 21638972 -122147483 + L1P4 LINE L1 5395 5676 -489 2420 129 11 5 chr12 21639016 21639389 -122147066 + THE1C LTR MaLR 1 375 0 9160 129 40 37 chr12 21639389 21640965 -122145490 + THE1C-int LTR MaLR 1 1580 0 2640 111 0 5 chr12 21640965 21641342 -122145113 + THE1C LTR MaLR 1 375 0 384 370 60 5 chr12 21641684 21641884 -122144571 + MIR SINE MIR 52 262 0 21 36 0 0 chr12 21641938 21641966 -122144489 + AT_rich Low_complexity Low_complexity 1 28 0 981 183 5 5 chr12 21644273 21644464 -122141991 + L1PB1 LINE L1 3 193 -6670 * 13840 194 45 19 chr12 21644451 21646424 -122140031 + L1PB1 LINE L1 620 2541 -4326 279 0 0 0 chr12 21646424 21646455 -122140000 + (CA)n Simple_repeat Simple_repeat 2 32 0 13840 194 45 19 chr12 21646455 21650497 -122135958 + L1PB1 LINE L1 2541 6867 0 21 36 0 0 chr12 21651406 21651434 -122135021 + AT_rich Low_complexity Low_complexity 1 28 0 227 188 83 0 chr12 21652047 21652095 -122134360 - L2 LINE L2 -6 3266 3215 352 248 80 66 chr12 21652126 21652263 -122134192 + MIR SINE MIR 68 206 -56 239 325 9 9 chr12 21652924 21653038 -122133417 + (CA)n Simple_repeat Simple_repeat 2 115 0 2227 321 126 25 chr12 21653095 21653286 -122133169 + L2 LINE L2 107 277 -3037 2094 122 0 7 chr12 21653286 21653582 -122132873 - AluSx SINE Alu -18 294 1 2227 321 126 25 chr12 21653582 21654981 -122131474 + L2 LINE L2 277 1857 -1457 463 235 74 7 chr12 21654998 21655192 -122131263 + L1PB4 LINE L1 907 1114 -5090 1186 81 0 0 chr12 21655210 21655359 -122131096 + AluSc SINE Alu 149 297 -12 10516 220 43 41 chr12 21655438 21659900 -122126555 + L1PB4 LINE L1 1253 5718 -495 1875 166 0 6 chr12 21659900 21660026 -122126429 + AluSq SINE Alu 1 126 -187 642 104 0 0 chr12 21660026 21660122 -122126333 + (CATAA)n Simple_repeat Simple_repeat 2 97 0 1875 166 0 6 chr12 21660122 21660309 -122126146 + AluSq SINE Alu 126 312 -1 10516 220 43 41 chr12 21660309 21660803 -122125652 + L1PB4 LINE L1 5718 6210 -3 1803 330 112 44 chr12 21660857 21662212 -122124243 + L2 LINE L2 1883 3313 0 415 323 100 35 chr12 21662895 21663388 -122123067 + L2 LINE L2 2785 3312 -1 22 56 0 0 chr12 21664286 21664322 -122122133 + AT_rich Low_complexity Low_complexity 1 36 0 349 295 0 33 chr12 21666476 21666598 -122119857 + GA-rich Low_complexity Low_complexity 4 121 0 224 356 9 17 chr12 21666801 21666916 -122119539 + MIR3 SINE MIR 89 202 -6 22 0 0 0 chr12 21667298 21667320 -122119135 + AT_rich Low_complexity Low_complexity 1 22 0 1457 217 102 3 chr12 21667383 21667715 -122118740 + MLT1A1 LTR MaLR 1 365 0 352 205 71 31 chr12 21667846 21667973 -122118482 - Charlie1 DNA MER1_type -3 2758 2627 723 277 33 0 chr12 21667973 21668157 -122118298 - Charlie1 DNA MER1_type -2544 217 28 269 308 75 42 chr12 21668499 21668619 -122117836 + MIR3 SINE MIR 79 202 -6 192 405 40 7 chr12 21669080 21669228 -122117227 + L3b LINE CR1 1300 1452 -131 247 366 113 14 chr12 21669266 21669408 -122117047 + MIR SINE MIR 12 167 -95 387 184 0 0 chr12 21669859 21669865 -122116590 + (TA)n Simple_repeat Simple_repeat 2 7 -108 369 0 0 0 chr12 21669865 21669906 -122116549 + (CA)n Simple_repeat Simple_repeat 2 42 0 387 184 0 0 chr12 21669906 21670013 -122116442 + (TA)n Simple_repeat Simple_repeat 6 115 0 248 269 54 30 chr12 21671624 21671791 -122114664 - L1ME4a LINE L1 -115 6006 5836 1292 246 0 4 chr12 21671902 21672288 -122114167 + AluJb SINE Alu 5 389 0 42 36 0 0 chr12 21672314 21672370 -122114085 + AT_rich Low_complexity Low_complexity 1 56 0 521 315 122 13 chr12 21673143 21673381 -122113074 - L3 LINE CR1 -35 1542 1279 603 123 69 100 chr12 21673699 21673829 -122112626 + MER63 DNA MER1_type 1 752 -310 68 24 0 0 chr12 21674310 21674392 -122112063 + AT_rich Low_complexity Low_complexity 1 82 0 732 283 11 38 chr12 21675316 21675581 -122110874 + HsTC2a DNA Tc2 4 261 -483 1056 228 5 9 chr12 21675582 21675793 -122110662 + L1MA1 LINE L1 1699 1908 -5657 6453 179 24 29 chr12 21675796 21678926 -122107529 + L1MA1 LINE L1 1963 7721 0 13467 184 25 27 chr12 21678942 21679804 -122106651 + L1MA2 LINE L1 2268 3130 -4593 1941 150 23 0 chr12 21679804 21680110 -122106345 - AluSq SINE Alu 0 313 1 13467 184 25 27 chr12 21680110 21681859 -122104596 + L1MA2 LINE L1 3130 4881 -2842 366 94 0 0 chr12 21681859 21681912 -122104543 + MADE1 DNA Mariner 1 53 -27 13467 184 25 27 chr12 21681912 21684556 -122101899 + L1MA2 LINE L1 4881 7723 0 23 0 0 0 chr12 21684556 21684579 -122101876 + AT_rich Low_complexity Low_complexity 1 23 0 8707 212 53 58 chr12 21684604 21685583 -122100872 + L1MB1 LINE L1 2908 3891 -3696 545 215 0 0 chr12 21685583 21685676 -122100779 + MER2 DNA MER2_type 1 93 -252 8707 212 53 58 chr12 21685676 21687459 -122098996 + L1MB1 LINE L1 3891 5682 -1905 390 42 0 0 chr12 21687459 21687507 -122098948 + (CA)n Simple_repeat Simple_repeat 1 48 0 8707 212 53 58 chr12 21687507 21689307 -122097148 + L1MB1 LINE L1 5682 7528 -59 13746 159 27 62 chr12 21689307 21691169 -122095286 - Tigger2 DNA MER2_type 0 2718 984 2982 105 11 0 chr12 21691169 21691607 -122094848 - L1PA10 LINE L1 -2 6166 5724 13746 159 27 62 chr12 21691607 21692558 -122093897 - Tigger2 DNA MER2_type -1734 984 2 317 167 0 0 chr12 21692559 21692619 -122093836 + L1MB1 LINE L1 7527 7586 -1 391 306 101 21 chr12 21696006 21696333 -122090122 - L1ME4a LINE L1 -246 5875 5523 22 0 0 0 chr12 21696384 21696406 -122090049 + AT_rich Low_complexity Low_complexity 1 22 0 531 292 125 19 chr12 21696596 21696812 -122089643 + MER8 DNA MER2_type 1 239 0 260 376 62 6 chr12 21697820 21697982 -122088473 - L2 LINE L2 -212 3060 2890 448 325 51 5 chr12 21698331 21698528 -122087927 + MLT1J LTR MaLR 6 211 -300 190 389 67 0 chr12 21699825 21699915 -122086540 - L2 LINE L2 -224 3048 2953 524 334 83 55 chr12 21699950 21700404 -122086051 + HAL1 LINE L1 830 1269 -1238 1929 122 3 47 chr12 21700404 21700723 -122085732 + AluSq SINE Alu 1 305 -8 1925 48 48 37 chr12 21700725 21700994 -122085461 + AluY SINE Alu 39 310 -1 524 334 83 55 chr12 21700994 21701123 -122085332 + HAL1 LINE L1 1269 1433 -1074 348 323 13 7 chr12 21701141 21701296 -122085159 + HAL1 LINE L1 1486 1641 -866 1043 225 81 63 chr12 21701341 21701675 -122084780 + MER2 DNA MER2_type 1 340 -5 1019 201 9 27 chr12 21702477 21702696 -122083759 - MER20 DNA MER1_type -1 218 4 2540 101 13 0 chr12 21703091 21703469 -122082986 - L1PB2 LINE L1 0 6151 5769 5958 90 16 0 chr12 21703489 21704322 -122082133 - L1PA8A LINE L1 -1 6130 5285 261 103 0 0 chr12 21704318 21704357 -122082098 + L1PA8A LINE L1 5224 5262 -884 * 1111 214 97 27 chr12 21704816 21705115 -122081340 + MLT1A1 LTR MaLR 16 335 -30 546 306 90 39 chr12 21705134 21705389 -122081066 + L2 LINE L2 2548 2815 -499 305 232 0 120 chr12 21705494 21705619 -122080836 + L1P LINE L1 3341 3450 -2696 2203 99 7 0 chr12 21705623 21705917 -122080538 - AluSg SINE Alu -14 296 1 1047 253 44 34 chr12 21705928 21706339 -122080116 + L1PA15 LINE L1 3220 3634 -2512 3314 205 12 3 chr12 21706349 21707016 -122079439 + L1PA15 LINE L1 5491 6163 -2 244 288 53 11 chr12 21707051 21707180 -122079275 + L1M4 LINE L1 349 546 -5757 2195 88 0 25 chr12 21707538 21707858 -122078597 - AluSx SINE Alu 0 312 1 1564 271 57 43 chr12 21707955 21708765 -122077690 + L1M4 LINE L1 804 1714 -4589 2482 45 10 19 chr12 21708765 21709078 -122077377 + AluY SINE Alu 2 311 0 1564 271 57 43 chr12 21709078 21709154 -122077301 + L1M4 LINE L1 1714 1787 -4516 810 215 33 9 chr12 21709272 21709486 -122076969 - L1M4c LINE L1 -5066 1318 1100 852 253 18 14 chr12 21709490 21709711 -122076744 - MLT1A1 LTR MaLR 0 365 144 24588 98 7 3 chr12 21709711 21714058 -122072397 - L1PA7 LINE L1 -4 6150 1784 210 162 0 0 chr12 21714431 21714468 -122071987 + T-rich Low_complexity Low_complexity 4 40 0 11970 231 28 33 chr12 21715052 21717600 -122068855 + L1PB3 LINE L1 3 2561 -4309 2057 119 14 0 chr12 21717600 21717893 -122068562 + AluSc SINE Alu 1 297 -12 11970 231 28 33 chr12 21717893 21719962 -122066493 + L1PB3 LINE L1 2561 4638 -2232 1560 197 0 25 chr12 21719962 21720282 -122066173 + AluSx SINE Alu 1 312 0 11970 231 28 33 chr12 21720282 21723429 -122063026 + L1PB3 LINE L1 4638 6863 -7 23 54 0 0 chr12 21724308 21724345 -122062110 + AT_rich Low_complexity Low_complexity 1 37 0 227 315 111 6 chr12 21724562 21724724 -122061731 + HAL1 LINE L1 1483 1661 -846 1001 216 70 63 chr12 21724997 21725284 -122061171 - MLT1A1 LTR MaLR 0 365 77 512 274 37 55 chr12 21725791 21726008 -122060447 + L1M4 LINE L1 2775 2986 -3396 1285 171 0 5 chr12 21726008 21726230 -122060225 + L1PA15 LINE L1 5944 6164 -1 512 274 37 55 chr12 21726230 21726340 -122060115 + L1M4 LINE L1 2986 3096 -3286 23 33 0 0 chr12 21726368 21726398 -122060057 + AT_rich Low_complexity Low_complexity 1 30 0 5766 204 100 75 chr12 21726441 21728414 -122058041 + L1ME3 LINE L1 1 2023 -4403 1412 193 100 0 chr12 21728474 21728743 -122057712 - AluSx SINE Alu -8 304 9 933 170 57 5 chr12 21728756 21728950 -122057505 + L1ME3 LINE L1 2120 2323 -4103 2053 28 4 4 chr12 21729094 21729343 -122057112 + L1PA3 LINE L1 5901 6149 -6 21 0 0 0 chr12 21729344 21729365 -122057090 + AT_rich Low_complexity Low_complexity 1 21 0 2997 249 23 49 chr12 21729406 21729508 -122056947 + L1ME3 LINE L1 2308 2411 -4015 1764 176 42 6 chr12 21729508 21729844 -122056611 + MER7A DNA MER2_type 1 346 0 2997 249 23 49 chr12 21729844 21730878 -122055577 + L1ME3 LINE L1 2411 3406 -3020 2146 92 0 0 chr12 21730878 21731149 -122055306 + AluY SINE Alu 3 273 -38 2997 249 23 49 chr12 21731149 21731375 -122055080 + L1ME3 LINE L1 3406 3636 -2790 * 3235 137 59 21 chr12 21731348 21732020 -122054435 + L1PB1 LINE L1 2354 3052 -3810 375 94 0 0 chr12 21732020 21732073 -122054382 - AluY SINE Alu 0 301 249 1407 67 72 0 chr12 21732073 21732253 -122054202 - AluY SINE Alu -118 193 1 12059 205 33 5 chr12 21732253 21735500 -122050955 + L1PB1 LINE L1 3041 6376 -491 2555 158 23 5 chr12 21735508 21735951 -122050504 + L1PB1 LINE L1 6417 6867 0 339 25 0 0 chr12 21735993 21736033 -122050422 + (CA)n Simple_repeat Simple_repeat 1 40 0 23 86 0 0 chr12 21736237 21736295 -122050160 + AT_rich Low_complexity Low_complexity 1 58 0 2127 127 7 0 chr12 21736393 21736692 -122049763 - AluSg SINE Alu -6 304 4 34203 102 14 11 chr12 21736772 21741836 -122044619 + L1PA6 LINE L1 11 5090 -1056 1047 59 0 0 chr12 21741841 21741976 -122044479 - L1PA6 LINE L1 -7 6147 6013 6511 61 40 1 chr12 21741996 21743030 -122043425 + L1PA6 LINE L1 5084 6151 -3 441 287 32 44 chr12 21743037 21743059 -122043396 + L1ME3 LINE L1 5076 5097 -1765 2189 109 3 3 chr12 21743059 21743361 -122043094 + AluSc SINE Alu 1 302 -7 441 287 32 44 chr12 21743361 21743464 -122042991 + L1ME3 LINE L1 5097 5200 -1662 2417 71 0 0 chr12 21743464 21743761 -122042694 - AluY SINE Alu -14 297 1 441 287 32 44 chr12 21743761 21743925 -122042530 + L1ME3 LINE L1 5200 5363 -1499 307 299 39 91 chr12 21744066 21744297 -122042158 + L1ME3 LINE L1 5511 5729 -1133 611 289 53 24 chr12 21744529 21744915 -122041540 + L1ME3 LINE L1 5985 6383 -503 1026 199 166 14 chr12 21745029 21745306 -122041149 - MSTA LTR MaLR -109 319 1 8134 168 15 48 chr12 21745306 21746939 -122039516 - MSTA-int LTR MaLR 0 1580 3 1752 135 170 22 chr12 21746941 21747312 -122039143 - MSTA LTR MaLR 0 428 3 401 326 53 26 chr12 21747314 21747504 -122038951 + L1ME3 LINE L1 6391 6585 -293 213 324 38 19 chr12 21748201 21748306 -122038149 - L2 LINE L2 -66 3247 3141 420 157 47 6 chr12 21748308 21748480 -122037975 + (TA)n Simple_repeat Simple_repeat 2 180 0 1959 183 45 33 chr12 21748480 21749007 -122037448 - MLT2A2 LTR ERVL -8 546 5 237 101 51 25 chr12 21749007 21749086 -122037369 + (TA)n Simple_repeat Simple_repeat 1 81 0 1399 222 91 63 chr12 21749107 21749535 -122036920 + MLT1D LTR MaLR 6 445 -60 13722 167 55 65 chr12 21749535 21751198 -122035257 + MER4C-int LTR ERV1 1357 3034 -3564 207 0 0 0 chr12 21751198 21751221 -122035234 + (TAAAA)n Simple_repeat Simple_repeat 1 23 0 13722 167 55 65 chr12 21751221 21751933 -122034522 + MER4C-int LTR ERV1 3034 3751 -2847 216 97 0 0 chr12 21751933 21751964 -122034491 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 13722 167 55 65 chr12 21751964 21754529 -122031926 + MER4C-int LTR ERV1 3751 6429 -169 2597 127 69 5 chr12 21754576 21755008 -122031447 + MER4C LTR ERV1 5 464 -1 27 29 0 0 chr12 21756039 21756073 -122030382 + AT_rich Low_complexity Low_complexity 1 34 0 217 263 40 50 chr12 21756108 21756207 -122030248 - L2 LINE L2 -2 3270 3173 22 56 0 0 chr12 21756655 21756691 -122029764 + AT_rich Low_complexity Low_complexity 1 36 0 312 326 76 15 chr12 21756730 21756862 -122029593 - L1MC/D LINE L1 -1958 5850 5711 17042 142 29 35 chr12 21756865 21757689 -122028766 - L1PA10 LINE L1 -1 6883 6055 2089 84 27 43 chr12 21757689 21757988 -122028467 - AluY SINE Alu -17 294 1 17042 142 29 35 chr12 21757988 21761334 -122025121 - L1PA10 LINE L1 -829 6055 2730 26 64 0 0 chr12 21761435 21761482 -122024973 + AT_rich Low_complexity Low_complexity 1 47 0 29356 106 12 8 chr12 21761482 21766839 -122019616 - L1PA7 LINE L1 -6 6463 1042 14666 145 4 10 chr12 21766841 21769097 -122017358 + HUERS-P3 LTR ERV1 1956 4197 -4722 * 16409 156 8 8 chr12 21769070 21771671 -122014784 + HUERS-P3 LTR ERV1 4311 6912 -2007 1162 206 20 10 chr12 21771890 21772154 -122014301 + HUERS-P3 LTR ERV1 7156 8915 -4 1239 264 56 72 chr12 21772155 21772777 -122013678 + LTR9 LTR ERV1 1 612 0 2193 162 8 5 chr12 21772874 21773546 -122012909 - L1PA10 LINE L1 -5193 1670 850 1964 172 101 35 chr12 21773874 21774328 -122012127 + LTR2B LTR ERV1 7 490 0 32874 108 41 41 chr12 21774328 21781232 -122005223 + Harlequin LTR ERV1 1 6896 0 736 72 0 0 chr12 21781236 21781333 -122005122 - AluYb8 SINE Alu -187 131 35 3581 135 5 27 chr12 21781352 21781876 -122004579 + L1M1 LINE L1 2884 3530 -4035 2335 92 0 20 chr12 21781876 21782182 -122004273 + AluSg SINE Alu 1 300 -10 3581 135 5 27 chr12 21782182 21782397 -122004058 + L1M1 LINE L1 3530 3748 -3817 * 11858 206 41 14 chr12 21782375 21785627 -122000828 + L1PA14 LINE L1 4005 7357 -223 4070 151 29 12 chr12 21785242 21785997 -122000458 + L1MA3 LINE L1 6955 7722 -2 * 1877 146 75 22 chr12 21786555 21786877 -121999578 + MER1B DNA MER1_type 1 339 0 263 247 37 12 chr12 21787108 21787189 -121999266 - L2 LINE L2 -903 2411 2329 230 304 104 9 chr12 21787204 21787319 -121999136 - L2 LINE L2 -2621 693 568 285 304 11 0 chr12 21787640 21787732 -121998723 + MLT1L LTR MaLR 344 436 -179 1729 63 0 0 chr12 21787785 21788086 -121998369 + L1PA5 LINE L1 5934 6234 0 517 211 0 0 chr12 21788141 21788236 -121998219 - FRAM SINE Alu -17 159 65 470 264 90 57 chr12 21788517 21788984 -121997471 + L1MCa LINE L1 19 795 -5627 606 271 81 7 chr12 21789348 21789643 -121996812 + L1MCa LINE L1 1120 1436 -4987 7229 213 20 19 chr12 21790134 21792901 -121993554 + L1PA16 LINE L1 3403 6165 -1 * 9460 210 32 27 chr12 21792888 21797650 -121988805 + L1MA5A LINE L1 3462 6766 -950 821 130 25 56 chr12 21797650 21797812 -121988643 + L1PB2 LINE L1 5993 6149 -2 9460 210 32 27 chr12 21797812 21798520 -121987935 + L1MA5A LINE L1 6766 7469 -247 5262 171 27 18 chr12 21798511 21800132 -121986323 + L1MA6 LINE L1 4654 6285 -15 * 261 83 0 0 chr12 21800287 21800323 -121986132 + (CA)n Simple_repeat Simple_repeat 2 37 0 27 29 0 0 chr12 21800511 21800545 -121985910 + AT_rich Low_complexity Low_complexity 1 34 0 3972 205 55 31 chr12 21800632 21801628 -121984827 + LTR28 LTR ERV1 1 1020 0 29 0 0 0 chr12 21802003 21802032 -121984423 + AT_rich Low_complexity Low_complexity 1 29 0 8377 225 72 20 chr12 21802954 21804661 -121981794 + L1MCa LINE L1 574 2191 -4235 1531 178 10 50 chr12 21804661 21804959 -121981496 + AluJb SINE Alu 1 286 -26 8377 225 72 20 chr12 21804959 21805315 -121981140 + L1MCa LINE L1 2191 2527 -3899 506 200 118 41 chr12 21805315 21805510 -121980945 - MER6B DNA MER2_type 0 210 1 8377 225 72 20 chr12 21805510 21805748 -121980707 + L1MCa LINE L1 2527 2751 -3675 1238 155 12 139 chr12 21805748 21805903 -121980552 + AluY SINE Alu 1 88 -253 2216 118 0 7 chr12 21805903 21806209 -121980246 + AluSc SINE Alu 1 304 -5 1238 155 12 139 chr12 21806209 21806435 -121980020 + AluY SINE Alu 88 341 0 8377 225 72 20 chr12 21806435 21808765 -121977690 + L1MCa LINE L1 2751 5448 -978 349 222 9 28 chr12 21808782 21808890 -121977565 + L1MC1 LINE L1 4081 4186 -2240 520 210 0 0 chr12 21808890 21808990 -121977465 + FRAM SINE Alu 41 140 -36 180 0 0 0 chr12 21808995 21809015 -121977440 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5183 191 25 36 chr12 21809015 21809254 -121977201 + L1MC1 LINE L1 5441 5681 -932 2437 74 0 26 chr12 21809254 21809565 -121976890 + AluY SINE Alu 3 305 -6 5183 191 25 36 chr12 21809565 21810519 -121975936 + L1MC1 LINE L1 5681 6612 -1 25 31 0 0 chr12 21810571 21810603 -121975852 + AT_rich Low_complexity Low_complexity 1 32 0 23 54 0 0 chr12 21810826 21810863 -121975592 + AT_rich Low_complexity Low_complexity 1 37 0 2019 121 7 7 chr12 21810916 21811213 -121975242 + AluSx SINE Alu 1 297 -15 493 125 42 25 chr12 21811213 21811333 -121975122 + GA-rich Low_complexity Low_complexity 2 123 0 215 360 98 18 chr12 21811333 21811497 -121974958 + L3 LINE CR1 1345 1521 -56 245 279 13 97 chr12 21811570 21811796 -121974659 - L1MC4a LINE L1 -1881 5927 5721 250 200 0 0 chr12 21811805 21811850 -121974605 - L1MC4a LINE L1 -2151 5657 5613 2001 206 71 14 chr12 21812079 21812561 -121973894 - L1MC3 LINE L1 -14 7771 5810 1019 198 198 4 chr12 21812563 21812806 -121973649 + MSTA LTR MaLR 1 290 -138 8688 147 11 72 chr12 21812821 21813733 -121972722 + MSTA-int LTR MaLR 5 971 -609 317 167 0 0 chr12 21813733 21813787 -121972668 + AluSq/x SINE Alu 83 136 -167 852 229 0 0 chr12 21813787 21813953 -121972502 + AluJo/FRAM SINE Alu 137 302 0 8688 147 11 72 chr12 21813953 21814472 -121971983 + MSTA-int LTR MaLR 970 1379 -201 2315 95 0 3 chr12 21814472 21814767 -121971688 - AluY SINE Alu -17 294 1 8688 147 11 72 chr12 21814767 21814958 -121971497 + MSTA-int LTR MaLR 1379 1580 0 1721 168 160 19 chr12 21814959 21815333 -121971122 + MSTA LTR MaLR 2 428 0 1105 226 104 0 chr12 21815341 21815628 -121970827 - L1MC3 LINE L1 -540 5804 5488 1870 156 3 20 chr12 21815636 21815938 -121970517 - AluSx SINE Alu -15 297 1 1167 136 11 5 chr12 21816112 21816296 -121970159 - L1PA15 LINE L1 -112 6053 5869 1792 138 0 0 chr12 21816296 21816578 -121969877 + L1P4 LINE L1 5395 5676 -489 355 355 54 22 chr12 21816932 21817166 -121969289 + MIR SINE MIR 20 262 0 24 32 0 0 chr12 21820465 21820496 -121965959 + AT_rich Low_complexity Low_complexity 1 31 0 196 229 83 0 chr12 21821112 21821160 -121965295 - L2 LINE L2 -6 3266 3215 319 231 90 0 chr12 21821226 21821304 -121965151 + MIR SINE MIR 100 184 -78 2128 148 19 19 chr12 21821596 21821960 -121964495 + THE1B LTR MaLR 1 364 0 11604 98 4 6 chr12 21821960 21823543 -121962912 + THE1B-int LTR MaLR 1 1580 0 1973 138 33 25 chr12 21823543 21823904 -121962551 + THE1B LTR MaLR 1 364 0 2072 331 128 26 chr12 21824871 21826467 -121959988 + L2 LINE L2 107 1865 -1449 11366 218 32 33 chr12 21826475 21828506 -121957949 + L1PB4 LINE L1 907 2937 -3276 2070 142 0 3 chr12 21828506 21828809 -121957646 + AluSx SINE Alu 1 302 -10 11366 218 32 33 chr12 21828809 21832006 -121954449 + L1PB4 LINE L1 2937 6213 0 1724 336 101 31 chr12 21832007 21833407 -121953048 + L2 LINE L2 1833 3313 0 240 269 141 32 chr12 21833935 21834091 -121952364 - L3 LINE CR1 -594 983 811 338 292 64 0 chr12 21834106 21834287 -121952168 + L2 LINE L2 2781 2971 -301 205 241 35 17 chr12 21834622 21834680 -121951775 - L3 LINE CR1 -1079 498 440 26 50 0 0 chr12 21835506 21835546 -121950909 + AT_rich Low_complexity Low_complexity 1 40 0 2066 124 0 7 chr12 21836021 21836319 -121950136 + AluSg SINE Alu 1 296 -14 331 212 53 18 chr12 21837896 21838009 -121948446 + GA-rich Low_complexity Low_complexity 4 120 0 246 306 83 9 chr12 21838209 21838317 -121948138 + MIR3 SINE MIR 89 204 -4 32 67 0 0 chr12 21838503 21838563 -121947892 + AT_rich Low_complexity Low_complexity 1 60 0 193 179 71 36 chr12 21838797 21838853 -121947602 + MIR SINE MIR 110 167 -95 813 89 0 8 chr12 21839403 21839526 -121946929 + AluY SINE Alu 188 309 -2 29 47 0 0 chr12 21840961 21841004 -121945451 + AT_rich Low_complexity Low_complexity 1 43 0 448 312 126 34 chr12 21841124 21841387 -121945068 - L3 LINE CR1 -13 1564 1278 2180 102 3 3 chr12 21841594 21841887 -121944568 + AluSx SINE Alu 1 293 -19 586 154 54 85 chr12 21841993 21842123 -121944332 + MER63 DNA MER1_type 1 752 -84 48 43 0 0 chr12 21842609 21842678 -121943777 + AT_rich Low_complexity Low_complexity 1 69 0 1220 257 112 55 chr12 21843610 21844210 -121942245 + HsTC2a DNA Tc2 11 644 -100 621 335 48 9 chr12 21844216 21844446 -121942009 + L1M3d LINE L1 5 243 -5648 4143 94 19 0 chr12 21844540 21845117 -121941338 + L1PA10 LINE L1 5577 6164 -4 679 298 7 32 chr12 21845129 21845358 -121941097 + L1M3d LINE L1 252 688 -5203 183 42 0 0 chr12 21845358 21845382 -121941073 + (CAAAAA)n Simple_repeat Simple_repeat 4 27 0 834 304 82 56 chr12 21845385 21845914 -121940541 + L1M3d LINE L1 247 808 -5083 7802 171 48 42 chr12 21845933 21847467 -121938988 + L1MB1 LINE L1 747 2290 -5275 2211 187 14 0 chr12 21847458 21847876 -121938579 + L1MB1 LINE L1 4985 5408 -2157 * 4505 204 16 11 chr12 21847898 21849146 -121937309 + L1MB1 LINE L1 6064 7325 -262 7540 73 15 6 chr12 21849146 21850144 -121936311 + LTR13 LTR ERVK 1 1007 0 4505 204 16 11 chr12 21850144 21850350 -121936105 + L1MB1 LINE L1 7325 7528 -59 513 234 0 0 chr12 21850350 21850444 -121936011 - Tigger2 DNA MER2_type 0 2718 2625 487 148 0 0 chr12 21850467 21850548 -121935907 - L1 LINE L1 -2157 3989 3909 13615 160 33 40 chr12 21850554 21853183 -121933272 - Tigger2 DNA MER2_type -108 2610 1 323 312 0 32 chr12 21853648 21853773 -121932682 + Charlie8 DNA MER1_type 104 224 -2193 370 306 113 19 chr12 21856412 21856952 -121929503 - L1ME4a LINE L1 0 6121 5531 395 211 0 0 chr12 21857361 21857432 -121929023 + MER8 DNA MER2_type 169 239 0 333 0 0 0 chr12 21858088 21858125 -121928330 + (CA)n Simple_repeat Simple_repeat 2 38 0 2558 39 3 0 chr12 21858470 21858775 -121927680 + AluY SINE Alu 1 306 -5 503 302 47 51 chr12 21859308 21859563 -121926892 + MLT1J LTR MaLR 9 262 -249 260 167 0 0 chr12 21859662 21859710 -121926745 + MLT1J LTR MaLR 429 476 -35 195 271 21 0 chr12 21859744 21859792 -121926663 - L2 LINE L2 -1417 1897 1849 22 56 0 0 chr12 21859919 21859955 -121926500 + AT_rich Low_complexity Low_complexity 1 36 0 685 318 73 61 chr12 21860937 21861515 -121924940 + HAL1 LINE L1 831 1415 -1092 429 305 38 9 chr12 21861520 21861733 -121924722 + HAL1 LINE L1 1451 1669 -838 988 183 5 67 chr12 21861766 21861867 -121924588 + MER2 DNA MER2_type 1 82 -263 1712 172 10 3 chr12 21861867 21862170 -121924285 + AluSx SINE Alu 3 307 -5 988 183 5 67 chr12 21862170 21862292 -121924163 + MER2 DNA MER2_type 82 210 -135 56 61 0 0 chr12 21862893 21862991 -121923464 + AT_rich Low_complexity Low_complexity 1 98 0 867 225 14 27 chr12 21863258 21863480 -121922975 - MER20 DNA MER1_type 0 219 1 6613 215 82 87 chr12 21864168 21866249 -121920206 + L1M3 LINE L1 2286 4628 -1543 1248 219 14 28 chr12 21866249 21866532 -121919923 - AluJo SINE Alu -33 279 1 6613 215 82 87 chr12 21866532 21867683 -121918772 + L1M3 LINE L1 4628 5783 -388 1536 113 0 0 chr12 21867682 21867895 -121918560 + L1PA15 LINE L1 5418 5630 -535 * 1671 147 3 93 chr12 21867899 21868143 -121918312 + L1PA15 LINE L1 5837 6042 -123 2117 87 0 11 chr12 21868143 21868468 -121917987 + AluY SINE Alu 1 322 0 1671 147 3 93 chr12 21868468 21868575 -121917880 + L1PA15 LINE L1 6042 6157 -8 2479 264 60 25 chr12 21868581 21868979 -121917476 - L1M4 LINE L1 -1433 4713 4330 306 0 0 0 chr12 21868979 21869013 -121917442 + (TG)n Simple_repeat Simple_repeat 1 34 0 2479 264 60 25 chr12 21869013 21869566 -121916889 - L1M4 LINE L1 -1816 4330 3729 * 4651 199 42 11 chr12 21869563 21870638 -121915817 - L1MC2 LINE L1 0 6842 5735 1672 235 15 30 chr12 21870644 21871112 -121915343 - L1MC2 LINE L1 -4824 1822 1362 1030 251 55 26 chr12 21871123 21871466 -121914989 - MLT1A1 LTR MaLR -11 354 2 22 56 0 0 chr12 21871473 21871509 -121914946 + AT_rich Low_complexity Low_complexity 1 36 0 470 254 0 17 chr12 21871527 21871645 -121914810 - L1MC2 LINE L1 -5825 717 602 22 0 0 0 chr12 21871932 21871954 -121914501 + AT_rich Low_complexity Low_complexity 1 22 0 510 256 108 26 chr12 21872289 21872594 -121913861 + L1ME LINE L1 500 829 -5241 383 145 40 13 chr12 21872648 21872724 -121913731 - L1ME LINE L1 -3774 2306 2229 1624 192 33 3 chr12 21872742 21873101 -121913354 + L1ME LINE L1 2310 2679 -3401 2260 113 7 0 chr12 21873677 21873977 -121912478 - AluSx SINE Alu -10 302 1 601 141 8 16 chr12 21873991 21874112 -121912343 + L1ME LINE L1 2700 2819 -3261 1812 162 3 7 chr12 21874143 21874440 -121912015 - AluSx SINE Alu -16 296 1 343 279 26 7 chr12 21874465 21874619 -121911836 + (TA)n Simple_repeat Simple_repeat 1 157 0 425 349 130 37 chr12 21874648 21874930 -121911525 + HAL1 LINE L1 1219 1562 -945 2251 90 3 3 chr12 21874930 21875218 -121911237 - AluY SINE Alu -16 295 8 425 349 130 37 chr12 21875218 21875397 -121911058 + HAL1 LINE L1 1562 1723 -784 1049 197 128 66 chr12 21875609 21875883 -121910572 - MLT1A1 LTR MaLR 0 365 75 259 269 10 39 chr12 21876389 21876493 -121909962 + L1M4 LINE L1 2539 2639 -3507 2112 117 0 36 chr12 21876531 21876840 -121909615 + AluSg SINE Alu 1 298 -12 1390 127 5 9 chr12 21876936 21877157 -121909298 + L1PA15 LINE L1 5944 6163 -2 6663 227 46 52 chr12 21877371 21878068 -121908387 + L1MCa LINE L1 1 701 -5725 1825 117 4 11 chr12 21878068 21878334 -121908121 + AluSg1 SINE Alu 35 298 -11 6663 227 46 52 chr12 21878334 21879925 -121906530 + L1MCa LINE L1 701 2301 -4125 1667 192 45 3 chr12 21879925 21880259 -121906196 + MER7A DNA MER2_type 1 346 0 6663 227 46 52 chr12 21880259 21880521 -121905934 + L1MCa LINE L1 2301 2563 -3863 521 43 0 0 chr12 21880521 21880591 -121905864 + L1PA4 LINE L1 6083 6152 -3 6663 227 46 52 chr12 21880591 21881784 -121904671 + L1MCa LINE L1 2563 3795 -2631 2328 103 0 0 chr12 21881784 21882095 -121904360 + AluY SINE Alu 1 311 0 6663 227 46 52 chr12 21882095 21882449 -121904006 + L1MCa LINE L1 3795 4150 -2276 2179 163 11 3 chr12 21882478 21882839 -121903616 + THE1B LTR MaLR 1 364 0 6681 131 40 47 chr12 21882839 21884066 -121902389 + THE1B-int LTR MaLR 1 1218 -362 227 99 62 25 chr12 21884180 21884261 -121902194 + (TA)n Simple_repeat Simple_repeat 1 84 0 227 187 16 47 chr12 21884315 21884580 -121901875 + (TA)n Simple_repeat Simple_repeat 1 256 0 535 185 17 22 chr12 21884619 21884797 -121901658 + (TA)n Simple_repeat Simple_repeat 2 178 0 183 118 20 39 chr12 21884813 21884864 -121901591 + (TA)n Simple_repeat Simple_repeat 1 50 0 247 257 20 40 chr12 21884868 21885020 -121901435 + (CATATA)n Simple_repeat Simple_repeat 2 150 0 * 493 189 22 42 chr12 21884956 21885319 -121901136 + (TA)n Simple_repeat Simple_repeat 1 356 0 1116 254 103 35 chr12 21885371 21885800 -121900655 + MLT1D LTR MaLR 6 463 -42 800 273 131 4 chr12 21885851 21886126 -121900329 - L2 LINE L2 -165 3148 2839 769 335 21 10 chr12 21886630 21886890 -121899565 + MIR SINE MIR 2 262 0 23 54 0 0 chr12 21887071 21887108 -121899347 + AT_rich Low_complexity Low_complexity 1 37 0 2277 103 0 0 chr12 21887346 21887648 -121898807 - AluSg SINE Alu -8 302 1 2324 129 85 14 chr12 21888043 21888477 -121897978 + MER4C LTR ERV1 1 465 0 5766 154 127 61 chr12 21888488 21888588 -121897867 + MER4C-int LTR ERV1 1 93 -6505 4240 74 4 0 chr12 21888588 21889140 -121897315 + MER41A LTR ERV1 1 554 0 5766 154 127 61 chr12 21889140 21890047 -121896408 + MER4C-int LTR ERV1 93 938 -5660 342 45 0 0 chr12 21890047 21890091 -121896364 + (TG)n Simple_repeat Simple_repeat 1 44 0 5766 154 127 61 chr12 21890091 21890863 -121895592 + MER4C-int LTR ERV1 938 1657 -4941 2064 130 7 0 chr12 21890863 21891155 -121895300 + AluSg SINE Alu 7 300 -10 5766 154 127 61 chr12 21891155 21891767 -121894688 + MER4C-int LTR ERV1 1657 2485 -4113 14419 168 48 46 chr12 21891768 21892897 -121893558 + MER4C-int LTR ERV1 2846 3971 -2627 2105 147 0 10 chr12 21892897 21893211 -121893244 - AluSx SINE Alu -1 311 1 14419 168 48 46 chr12 21893211 21895824 -121890631 + MER4C-int LTR ERV1 3971 6595 -3 1725 100 30 7 chr12 21895830 21896099 -121890356 + MER4C LTR ERV1 1 275 -190 2564 100 60 21 chr12 21896107 21896538 -121889917 + LTR7 LTR ERV1 1 448 -2 14673 93 22 15 chr12 21896540 21899381 -121887074 + HERVH LTR ERV1 1 2985 -4728 807 144 20 0 chr12 21899377 21899523 -121886932 + HERVH LTR ERV1 3140 3288 -4425 * 3269 101 4 6 chr12 21899515 21900018 -121886437 + HERVH LTR ERV1 3492 3993 -3720 2629 143 8 11 chr12 21900020 21900638 -121885817 + HERVH LTR ERV1 4488 5149 -2564 1127 96 0 6 chr12 21900639 21900817 -121885638 + HERVH LTR ERV1 5600 5776 -1937 2269 79 3 10 chr12 21900836 21901128 -121885327 + AluY SINE Alu 1 290 -21 6377 136 26 7 chr12 21901129 21902659 -121883796 + L1MA1 LINE L1 4739 6302 0 239 292 23 88 chr12 21903138 21903309 -121883146 - L2 LINE L2 -2 3311 3152 29 28 0 0 chr12 21903337 21903373 -121883082 + AT_rich Low_complexity Low_complexity 1 36 0 228 67 0 0 chr12 21903729 21903759 -121882696 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 2343 65 0 23 chr12 21903809 21904116 -121882339 - AluY SINE Alu -11 300 1 241 297 191 3 chr12 21904145 21904428 -121882027 - L1MC4a LINE L1 -1866 5942 5607 331 275 22 22 chr12 21904560 21904738 -121881717 + (TA)n Simple_repeat Simple_repeat 2 179 0 2317 250 52 17 chr12 21904813 21905444 -121881011 + MER82 DNA MER2_type 1 653 0 2344 100 3 0 chr12 21906518 21906819 -121879636 + AluSp SINE Alu 1 302 -11 21 0 0 0 chr12 21908732 21908753 -121877702 + AT_rich Low_complexity Low_complexity 1 21 0 252 235 0 0 chr12 21908769 21908837 -121877618 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 2574 43 0 3 chr12 21908956 21909255 -121877200 - AluY SINE Alu -13 298 1 216 274 126 52 chr12 21909418 21909553 -121876902 - MER5B DNA MER1_type -30 148 4 214 250 44 44 chr12 21910514 21910582 -121875873 + L2 LINE L2 82 149 -3165 1218 81 0 0 chr12 21910587 21910736 -121875719 + AluY SINE Alu 1 149 -162 4190 125 170 86 chr12 21910738 21912158 -121874297 + pTR5 LTR ERV1 745 2428 -10 1237 89 12 6 chr12 21912158 21912326 -121874129 + AluSg/x SINE Alu 132 300 -12 3660 301 198 25 chr12 21912332 21914595 -121871860 + L2 LINE L2 156 2809 -505 605 301 62 67 chr12 21914611 21915000 -121871455 + L2 LINE L2 2927 3313 0 739 328 102 14 chr12 21915233 21915771 -121870684 + L2 LINE L2 2730 3313 0 245 317 0 24 chr12 21915863 21915945 -121870510 + Charlie2 DNA MER1_type 3 82 -2780 345 240 0 0 chr12 21915955 21916051 -121870404 - L1MA10 LINE L1 -8 6326 6231 308 299 77 5 chr12 21916071 21916292 -121870163 - L1ME2 LINE L1 -128 6036 5800 2273 100 7 0 chr12 21916292 21916593 -121869862 - AluY SINE Alu -8 303 1 835 244 174 36 chr12 21916596 21917146 -121869309 - L1ME2 LINE L1 -816 5330 4705 547 229 57 61 chr12 21917178 21917423 -121869032 - L1ME2 LINE L1 -1939 4207 3964 397 196 72 39 chr12 21917472 21917625 -121868830 + L1M4 LINE L1 3830 3987 -2159 * 930 220 73 0 chr12 21917624 21917883 -121868572 + L1MA4 LINE L1 5986 6263 -37 233 162 29 44 chr12 21917888 21917956 -121868499 + L1M4 LINE L1 3975 4041 -2105 823 214 30 10 chr12 21918245 21918446 -121868009 + MER3 DNA MER1_type 1 205 -4 516 316 128 20 chr12 21918758 21919055 -121867400 - L1ME LINE L1 -389 5732 5404 225 369 97 0 chr12 21920427 21920530 -121865925 + L2 LINE L2 3155 3267 -5 1959 146 3 13 chr12 21920609 21920911 -121865544 + AluSx SINE Alu 2 300 -12 1529 210 22 92 chr12 21920957 21921500 -121864955 + MLT1D LTR MaLR 1 505 0 228 277 15 0 chr12 21921804 21921869 -121864586 + LTR16B LTR ERVL 3 68 -396 591 261 62 23 chr12 21922220 21922367 -121864088 + MIR SINE MIR 14 154 -108 2432 86 0 0 chr12 21922367 21922671 -121863784 + AluY SINE Alu 1 304 -7 216 0 0 0 chr12 21922671 21922695 -121863760 + (TA)n Simple_repeat Simple_repeat 2 25 0 591 261 62 23 chr12 21922695 21922722 -121863733 + MIR SINE MIR 153 196 -66 1107 223 20 13 chr12 21922728 21923028 -121863427 + L1MB7 LINE L1 5858 6165 -1 938 235 48 101 chr12 21923119 21923514 -121862941 + MLT1B LTR MaLR 1 374 -16 1333 178 68 34 chr12 21923533 21923857 -121862598 + MLT1B-int LTR MaLR 4 342 -1029 2109 109 13 7 chr12 21923857 21924159 -121862296 - AluY SINE Alu -7 304 1 1333 178 68 34 chr12 21924159 21924188 -121862267 + MLT1B-int LTR MaLR 342 369 -1002 292 197 15 0 chr12 21924302 21924368 -121862087 + MLT1B-int LTR MaLR 680 746 -989 1005 219 23 0 chr12 21924518 21924733 -121861722 + MLT1B-int LTR MaLR 1321 1540 -195 2859 111 21 74 chr12 21924804 21924991 -121861464 - MER4B LTR ERV1 0 779 584 2252 110 3 0 chr12 21924991 21925291 -121861164 + AluY SINE Alu 1 301 -10 2859 111 21 74 chr12 21925291 21925748 -121860707 - MER4B LTR ERV1 -195 584 1 226 259 0 19 chr12 21925749 21925803 -121860652 - L2 LINE L2 -1051 2263 2211 187 295 9 29 chr12 21925891 21925996 -121860459 - L2 LINE L2 -1230 2084 1982 2417 75 10 0 chr12 21925999 21926307 -121860148 + AluY SINE Alu 1 311 0 15407 170 40 4 chr12 21927242 21931275 -121855180 + L1MA2 LINE L1 17 4239 -3326 1385 127 17 38 chr12 21931314 21931550 -121854905 - THE1B LTR MaLR -2 362 132 7007 113 22 9 chr12 21931550 21932569 -121853886 - THE1B-int LTR MaLR -548 1032 1 1918 169 25 33 chr12 21932569 21932936 -121853519 - THE1B LTR MaLR 0 364 1 6129 153 21 6 chr12 21932936 21934354 -121852101 + L1MA2 LINE L1 6286 7723 0 24536 105 29 32 chr12 21934362 21939245 -121847210 + Harlequin LTR ERV1 17 3395 0 3659 148 2 5 chr12 21939247 21939828 -121846627 + Harlequin LTR ERV1 4396 4974 -3425 526 226 75 0 chr12 21939797 21940076 -121846379 + Harlequin LTR ERV1 842 1141 -5755 * 225 214 29 43 chr12 21941342 21941412 -121845043 + CT-rich Low_complexity Low_complexity 2 70 0 2161 164 92 2 chr12 21941707 21942109 -121844346 - Tigger2 DNA MER2_type -1 2717 2280 422 134 15 0 chr12 21942107 21942174 -121844281 - Tigger2 DNA MER2_type -2649 69 2 * 279 93 0 0 chr12 21942176 21942219 -121844236 + (CA)n Simple_repeat Simple_repeat 2 44 0 245 188 0 42 chr12 21942237 21942285 -121844170 - MLT2D LTR ERVL -125 395 350 751 161 7 0 chr12 21942347 21942484 -121843971 - MLT2D LTR ERVL -263 151 14 484 315 42 15 chr12 21942725 21942985 -121843470 - L1M4 LINE L1 -1368 4778 4512 442 266 37 21 chr12 21943254 21943442 -121843013 - L1M4 LINE L1 -1944 4202 4012 308 197 34 26 chr12 21943485 21943602 -121842853 + MER69 DNA AcHobo 2379 2496 -30 519 206 0 19 chr12 21943603 21943710 -121842745 + FRAM SINE Alu 65 169 -7 331 294 137 41 chr12 21943803 21944000 -121842455 - MLT1L LTR MaLR -179 436 221 627 262 0 0 chr12 21944474 21944663 -121841792 - AluJ SINE Alu 0 345 157 * 663 143 0 84 chr12 21944662 21944781 -121841674 - AluJ SINE Alu -203 109 1 21 0 0 0 chr12 21944787 21944808 -121841647 + AT_rich Low_complexity Low_complexity 1 21 0 473 299 279 30 chr12 21945695 21946233 -121840222 + L2 LINE L2 44 715 -2599 10454 189 26 42 chr12 21946296 21950051 -121836404 - L1MA3 LINE L1 -5 7719 4032 13759 154 43 31 chr12 21950076 21952682 -121833773 - L1MA3 LINE L1 -3824 3741 1104 409 222 65 9 chr12 21952690 21952798 -121833657 - L1MA3 LINE L1 -7436 129 16 1404 164 17 0 chr12 21953675 21953906 -121832549 - L1P3 LINE L1 -6217 244 10 316 259 86 80 chr12 21954118 21954280 -121832175 - MLT1L LTR MaLR -299 168 6 2256 92 3 3 chr12 21954625 21954920 -121831535 - AluSg SINE Alu -15 295 1 336 274 102 32 chr12 21955148 21955305 -121831150 - L1ME LINE L1 -403 5718 5551 6711 165 49 15 chr12 21955992 21957690 -121828765 + L1PBa LINE L1 1690 3478 -3384 7474 25 8 0 chr12 21957690 21958705 -121827750 + L1PA3 LINE L1 5135 6159 0 6711 165 49 15 chr12 21958705 21959182 -121827273 + L1PBa LINE L1 3478 3937 -2925 63 84 0 0 chr12 21959416 21959570 -121826885 + AT_rich Low_complexity Low_complexity 1 154 0 342 298 199 35 chr12 21959599 21959881 -121826574 - L2 LINE L2 -37 3276 2949 659 319 77 50 chr12 21960089 21960465 -121825990 - L2 LINE L2 -1 3312 2927 4229 286 144 45 chr12 21960467 21962974 -121823481 - L2 LINE L2 -491 2823 70 384 319 165 28 chr12 21963306 21963488 -121822967 - MIR SINE MIR -31 231 25 199 356 42 17 chr12 21963984 21964102 -121822353 + MER5A DNA MER1_type 41 161 -28 230 204 0 0 chr12 21964409 21964458 -121821997 + L1MC4 LINE L1 6659 6707 -1335 44031 43 2 1 chr12 21965844 21971995 -121814460 - L1PA4 LINE L1 0 6155 2 25 65 0 0 chr12 21973187 21973233 -121813222 + AT_rich Low_complexity Low_complexity 1 46 0 24 32 0 0 chr12 21973531 21973562 -121812893 + AT_rich Low_complexity Low_complexity 1 31 0 2566 237 51 8 chr12 21973608 21974233 -121812222 - MER82 DNA MER2_type -1 652 1 252 286 200 8 chr12 21974520 21974775 -121811680 + L1MC4a LINE L1 5639 5942 -1866 23 33 0 0 chr12 21975212 21975242 -121811213 + AT_rich Low_complexity Low_complexity 1 30 0 326 331 41 35 chr12 21975291 21975436 -121811019 + L2 LINE L2 3125 3270 -2 22 35 0 0 chr12 21975471 21975500 -121810955 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr12 21976062 21976091 -121810364 + AT_rich Low_complexity Low_complexity 1 29 0 192 341 73 0 chr12 21976345 21976427 -121810028 - MIR SINE MIR -128 134 47 864 316 19 0 chr12 21977468 21977724 -121808731 - MIR SINE MIR 0 262 2 4894 214 14 3 chr12 21978135 21979227 -121807228 + L1PA15-16 LINE L1 1891 3000 -3849 1442 162 37 68 chr12 21979330 21979626 -121806829 - AluJb SINE Alu -23 289 3 344 360 30 24 chr12 21979636 21979800 -121806655 - L1ME LINE L1 -588 5854 5690 3255 275 35 4 chr12 21979922 21981301 -121805154 - L1ME LINE L1 -2460 3966 2552 10437 83 1 9 chr12 21981309 21983439 -121803016 - L1PA6 LINE L1 -13 6141 3947 9866 98 10 0 chr12 21983439 21984812 -121801643 + L1P3 LINE L1 29 1415 -5046 647 236 0 23 chr12 21984814 21984965 -121801490 - L1ME LINE L1 -4008 2599 2451 1687 195 32 6 chr12 21984965 21985303 -121801152 - MER7A DNA MER2_type -1 345 1 647 236 0 23 chr12 21985303 21985325 -121801130 - L1ME LINE L1 -4156 2451 2430 1737 199 119 9 chr12 21985333 21985786 -121800669 - L1ME LINE L1 -4204 2222 1720 * 5435 204 56 54 chr12 21985784 21987272 -121799183 - L1ME LINE L1 -4915 1511 21 496 296 61 36 chr12 21987338 21987700 -121798755 - L1MDa LINE L1 -3231 2984 2614 319 351 27 11 chr12 21987888 21988076 -121798379 - L1MDa LINE L1 -3846 2369 2179 1598 184 64 50 chr12 21988192 21988550 -121797905 + MLT1A1 LTR MaLR 3 365 0 227 260 13 13 chr12 21988848 21988925 -121797530 - L1MDa LINE L1 -4618 1597 1521 374 298 29 55 chr12 21988968 21989206 -121797249 - L1MDa LINE L1 -4912 1484 1253 254 240 13 67 chr12 21989304 21989454 -121797001 + T-rich Low_complexity Low_complexity 5 146 0 21 0 0 0 chr12 21990290 21990311 -121796144 + AT_rich Low_complexity Low_complexity 1 21 0 216 159 45 0 chr12 21991161 21991205 -121795250 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 2499 53 3 0 chr12 21991610 21991909 -121794546 - AluY SINE Alu -11 300 1 23 54 0 0 chr12 21992316 21992353 -121794102 + AT_rich Low_complexity Low_complexity 1 37 0 2031 130 3 0 chr12 21992424 21992716 -121793739 + AluSg SINE Alu 1 293 -17 275 104 21 0 chr12 21992862 21992910 -121793545 + L1MA9 LINE L1 6252 6300 -12 565 253 160 3 chr12 21993189 21993648 -121792807 - MER114 LTR ERV -6 642 88 5951 101 19 16 chr12 21993688 21995690 -121790765 + L1PA14 LINE L1 4183 6161 0 28 35 0 35 chr12 21995726 21995748 -121790707 + AT_rich Low_complexity Low_complexity 1 22 -33 1845 174 0 0 chr12 21995748 21996041 -121790414 + AluSx SINE Alu 14 306 -6 28 35 0 35 chr12 21996041 21996075 -121790380 + AT_rich Low_complexity Low_complexity 22 55 0 289 246 0 73 chr12 21997415 21997525 -121788930 - L1MDa LINE L1 -5476 729 628 1447 191 88 9 chr12 21997525 21997854 -121788601 - MLT1A1 LTR MaLR 0 365 11 210 263 20 101 chr12 21998974 21999073 -121787382 + L2 LINE L2 3178 3268 -4 298 305 79 30 chr12 21999381 21999545 -121786910 + L1MC2 LINE L1 612 990 -5656 * 1813 212 45 27 chr12 21999530 21999567 -121786888 + L1MC2 LINE L1 1323 1358 -5288 1208 244 58 19 chr12 21999567 21999927 -121786528 + MLT1A2 LTR MaLR 1 374 0 1813 212 45 27 chr12 21999927 22000404 -121786051 + L1MC2 LINE L1 1358 1846 -4800 2935 197 24 26 chr12 22000411 22001090 -121785365 + L1MC2 LINE L1 5752 6428 -414 3709 212 51 23 chr12 22001589 22001814 -121784641 - L1MB2 LINE L1 -12 5983 5766 2173 118 0 19 chr12 22001814 22002128 -121784327 - AluSg SINE Alu 0 310 3 3709 212 51 23 chr12 22002128 22003137 -121783318 - L1MB2 LINE L1 -229 5766 4711 1436 271 67 27 chr12 22003133 22003941 -121782514 - L1MB2 LINE L1 -4586 1315 365 * 376 273 114 53 chr12 22004238 22004465 -121781990 - L1MB2 LINE L1 -5650 241 1 807 319 48 69 chr12 22005000 22005662 -121780793 - L2 LINE L2 -119 3194 2547 1217 225 24 78 chr12 22005663 22006045 -121780410 - MLT1A1 LTR MaLR -4 361 1 693 203 94 61 chr12 22006865 22007077 -121779378 + MER20 DNA MER1_type 1 219 0 430 267 103 75 chr12 22007341 22007701 -121778754 - HAL1 LINE L1 -1244 1263 894 2188 77 53 0 chr12 22007781 22008066 -121778389 - AluY SINE Alu -11 300 1 22 35 0 0 chr12 22008232 22008261 -121778194 + AT_rich Low_complexity Low_complexity 1 29 0 195 304 0 43 chr12 22009039 22009108 -121777347 + L2 LINE L2 1832 1897 -1417 482 327 40 5 chr12 22009358 22009557 -121776898 - MLT1J LTR MaLR -300 211 6 250 343 67 29 chr12 22010142 22010247 -121776208 + L2 LINE L2 3175 3283 -30 284 250 0 0 chr12 22011061 22011125 -121775330 + Tigger2 DNA MER2_type 1 64 -2654 239 342 13 0 chr12 22011200 22011276 -121775179 - MER2 DNA MER2_type -268 77 1 328 323 91 32 chr12 22011578 22012077 -121774378 + L1ME4a LINE L1 5527 6064 -57 2228 141 28 0 chr12 22012077 22012431 -121774024 + THE1B LTR MaLR 1 364 0 328 323 91 32 chr12 22012431 22012492 -121773963 + L1ME4a LINE L1 6064 6120 -1 272 284 80 0 chr12 22013450 22013538 -121772917 + L2 LINE L2 3178 3272 0 246 186 16 33 chr12 22014987 22015055 -121771400 - Charlie8 DNA MER1_type -1008 1409 1351 362 296 0 32 chr12 22015130 22015255 -121771200 - Charlie8 DNA MER1_type -2204 213 93 327 177 0 0 chr12 22015668 22015730 -121770725 - L1MB1 LINE L1 -1 5991 5930 1262 189 24 0 chr12 22015730 22015984 -121770471 + Tigger2 DNA MER2_type 3 262 -2456 1331 325 20 47 chr12 22015995 22016628 -121769827 + L1PA13 LINE L1 788 1403 -6171 306 320 10 0 chr12 22016749 22016846 -121769609 + L1PA13 LINE L1 2085 2182 -5399 4900 265 33 25 chr12 22017115 22017220 -121769235 + L1PA13 LINE L1 2203 2306 -5278 1646 189 3 3 chr12 22017220 22017505 -121768950 - AluJb SINE Alu -27 285 1 4900 265 33 25 chr12 22017505 22020123 -121766332 + L1PA13 LINE L1 2306 4992 -2592 12710 178 20 11 chr12 22020160 22022505 -121763950 + Tigger2 DNA MER2_type 251 2615 -103 1277 174 14 5 chr12 22022506 22022724 -121763731 + MSTA LTR MaLR 1 220 -208 3459 175 34 14 chr12 22022739 22023437 -121763018 - L1MB1 LINE L1 -124 5868 5157 1844 127 11 7 chr12 22023465 22023749 -121762706 - AluSx SINE Alu -18 294 10 1243 184 37 52 chr12 22023749 22024016 -121762439 - L1MA8 LINE L1 -11 6280 6017 2455 166 24 11 chr12 22024016 22024468 -121761987 + LTR22A LTR ERVK 1 458 0 1243 184 37 52 chr12 22024468 22024527 -121761928 - L1MA8 LINE L1 -274 6017 5959 1741 152 29 3 chr12 22024540 22024850 -121761605 - L1PB3 LINE L1 -2 6152 5835 252 295 34 13 chr12 22024850 22024999 -121761456 - L1MB1 LINE L1 -825 5145 4994 * 6137 225 48 70 chr12 22024987 22027324 -121759131 - L1MB1 LINE L1 -1327 4643 2357 546 219 10 0 chr12 22027337 22027433 -121759022 - MER2 DNA MER2_type -247 98 2 239 219 24 24 chr12 22027435 22027517 -121758938 - L1MB1 LINE L1 -3615 2355 2274 1170 181 11 67 chr12 22027604 22027803 -121758652 - MSTB-int LTR MaLR -1116 535 353 2266 91 0 3 chr12 22027803 22028100 -121758355 - AluY SINE Alu -15 296 1 1170 181 11 67 chr12 22028100 22028170 -121758285 - MSTB-int LTR MaLR -1298 353 281 1098 83 6 13 chr12 22028170 22028326 -121758129 - AluSp SINE Alu -158 155 1 191 59 0 29 chr12 22028399 22028433 -121758022 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1588 179 11 0 chr12 22028462 22028742 -121757713 - MSTB-int LTR MaLR -1368 283 1 1791 220 59 5 chr12 22028742 22029146 -121757309 - MSTB LTR MaLR 0 426 1 599 302 73 90 chr12 22029148 22029419 -121757036 - L1MB1 LINE L1 -5110 781 507 197 33 33 0 chr12 22029419 22029449 -121757006 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 599 302 73 90 chr12 22029449 22029997 -121756458 - L1MB1 LINE L1 -5384 507 210 603 342 26 4 chr12 22030022 22030250 -121756205 - L1MB1 LINE L1 -5651 240 8 1284 290 82 30 chr12 22030261 22030867 -121755588 - HsTC2a DNA Tc2 -102 642 5 189 238 175 0 chr12 22031526 22031589 -121754866 - L2 LINE L2 -1 3312 3239 326 214 51 86 chr12 22032251 22032368 -121754087 - MER63 DNA MER1_type -309 753 15 378 373 113 0 chr12 22032659 22032906 -121753549 + L3 LINE CR1 1278 1552 -25 202 50 50 25 chr12 22033080 22033120 -121753335 + (TTTTC)n Simple_repeat Simple_repeat 5 45 0 21 36 0 0 chr12 22033695 22033723 -121752732 + AT_rich Low_complexity Low_complexity 1 28 0 1928 131 3 11 chr12 22033775 22034110 -121752345 - AluSx SINE Alu 0 333 1 215 338 39 0 chr12 22034110 22034187 -121752268 + L2 LINE L2 3234 3313 0 235 244 13 39 chr12 22034207 22034285 -121752170 + L1ME LINE L1 5841 5916 -205 3957 57 0 6 chr12 22035892 22036397 -121750058 + L1PA8 LINE L1 5666 6167 -5 22 0 0 0 chr12 22036818 22036840 -121749615 + AT_rich Low_complexity Low_complexity 1 22 0 276 309 154 44 chr12 22036945 22037081 -121749374 - MIR SINE MIR -100 162 12 247 265 29 0 chr12 22037731 22037799 -121748656 - MIR3 SINE MIR -3 205 136 882 259 25 0 chr12 22038172 22038408 -121748047 + Charlie1 DNA MER1_type 1 242 -2519 451 224 0 40 chr12 22038393 22038518 -121747937 + Charlie1 DNA MER1_type 2624 2743 -18 * 204 204 74 19 chr12 22038537 22038591 -121747864 - MIR SINE MIR -86 176 120 1248 222 116 6 chr12 22038660 22038989 -121747466 - MLT1A1 LTR MaLR 0 365 1 28 79 0 0 chr12 22039201 22039264 -121747191 + AT_rich Low_complexity Low_complexity 1 63 0 230 321 110 37 chr12 22039454 22039563 -121746892 - MIR3 SINE MIR -3 205 89 310 284 11 11 chr12 22039756 22039851 -121746604 + CT-rich Low_complexity Low_complexity 2 96 0 5077 180 20 9 chr12 22041150 22043053 -121743402 - L1PA16 LINE L1 -10 6156 4233 42332 35 22 2 chr12 22043070 22049097 -121737358 - L1PA2 LINE L1 -3 6152 4 3020 221 14 42 chr12 22049101 22049952 -121736503 - L1 LINE L1 -1904 4242 3416 243 61 0 0 chr12 22050139 22050172 -121736283 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 254 352 57 0 chr12 22052131 22052290 -121734165 - L2 LINE L2 -300 2972 2805 252 309 96 34 chr12 22052333 22052511 -121733944 + L3 LINE CR1 818 1006 -571 680 286 98 137 chr12 22052990 22053771 -121732684 - L2 LINE L2 0 3313 2503 1920 147 3 3 chr12 22053771 22054070 -121732385 - AluSx SINE Alu -13 299 1 680 286 98 137 chr12 22054070 22054373 -121732082 - L2 LINE L2 -810 2503 2198 524 247 0 0 chr12 22054373 22054500 -121731955 - FRAM SINE Alu 0 180 54 680 286 98 137 chr12 22054500 22054738 -121731717 - L2 LINE L2 -1115 2198 1952 685 94 9 0 chr12 22054744 22054850 -121731605 + AluSg/x SINE Alu 197 303 -6 2351 201 7 56 chr12 22054850 22055403 -121731052 + L1 LINE L1 3696 4221 -1925 2097 180 50 16 chr12 22055402 22055983 -121730472 + L1P5 LINE L1 5116 5711 -445 * 26 30 0 0 chr12 22056153 22056186 -121730269 + AT_rich Low_complexity Low_complexity 1 33 0 225 0 0 0 chr12 22056382 22056407 -121730048 + (A)n Simple_repeat Simple_repeat 1 25 0 324 120 0 0 chr12 22056407 22056457 -121729998 + (TA)n Simple_repeat Simple_repeat 2 51 0 22 56 0 0 chr12 22058901 22058937 -121727518 + AT_rich Low_complexity Low_complexity 1 36 0 314 365 66 10 chr12 22058937 22059134 -121727321 - MIR SINE MIR 0 262 55 245 284 0 0 chr12 22059175 22059242 -121727213 + (TA)n Simple_repeat Simple_repeat 2 68 0 3584 179 47 61 chr12 22059723 22060142 -121726313 + L1MC2 LINE L1 5478 5901 -443 1876 163 0 10 chr12 22060142 22060455 -121726000 + AluSg SINE Alu 1 310 0 3584 179 47 61 chr12 22060455 22060903 -121725552 + L1MC2 LINE L1 5901 6333 -11 286 200 12 24 chr12 22060918 22061003 -121725452 + L1MC4 LINE L1 5347 5430 -2378 752 287 15 48 chr12 22061063 22061397 -121725058 + L1MC4 LINE L1 5613 5935 -1873 22 56 0 0 chr12 22061879 22061915 -121724540 + AT_rich Low_complexity Low_complexity 1 36 0 274 167 39 26 chr12 22061987 22062065 -121724390 + (TA)n Simple_repeat Simple_repeat 2 80 0 438 295 48 21 chr12 22062112 22062482 -121723973 - L1MEc LINE L1 -912 1664 1492 1008 242 118 31 chr12 22062482 22062838 -121723617 + MLT1D LTR MaLR 39 425 -80 3304 145 41 3 chr12 22063078 22063664 -121722791 - L1MC1 LINE L1 0 6333 5726 2763 249 17 35 chr12 22063669 22064330 -121722125 - L1M4 LINE L1 -1796 4350 3706 2319 100 3 0 chr12 22064330 22064639 -121721816 - AluSp SINE Alu -3 310 1 2763 249 17 35 chr12 22064639 22064815 -121721640 - L1M4 LINE L1 -2440 3706 3528 3661 58 0 2 chr12 22064832 22065298 -121721157 - L1PA5 LINE L1 0 6154 5690 289 184 58 58 chr12 22065298 22065395 -121721060 + U2 snRNA snRNA 12 108 -80 1156 155 63 38 chr12 22065398 22065637 -121720818 - LTR8-int LTR ERV1 -3672 2274 2030 284 230 23 11 chr12 22065637 22065724 -121720731 - L1MC4 LINE L1 -1340 6702 6615 * 323 202 22 34 chr12 22065646 22065735 -121720720 + L1MC4 LINE L1 6616 6703 -1339 9786 157 53 65 chr12 22065813 22067934 -121718521 - LTR8-int LTR ERV1 -4161 2102 6 3904 143 11 73 chr12 22067939 22068676 -121717779 - LTR8 LTR ERV1 0 691 1 3231 275 26 30 chr12 22068679 22070029 -121716426 - L1P LINE L1 -3126 3020 1676 759 239 36 18 chr12 22070868 22071177 -121715278 - L1MCa LINE L1 -3950 2476 2280 4412 183 104 61 chr12 22071209 22071729 -121714726 - L1MCa LINE L1 -4538 1888 1392 2247 99 0 0 chr12 22071729 22072022 -121714433 - AluSg SINE Alu -17 293 1 4412 183 104 61 chr12 22072022 22072755 -121713700 - L1MCa LINE L1 -5034 1392 580 26 0 0 0 chr12 22072874 22072900 -121713555 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr12 22073035 22073058 -121713397 + AT_rich Low_complexity Low_complexity 1 23 0 5268 182 11 19 chr12 22073886 22074858 -121711597 - Tigger1 DNA MER2_type -1451 967 3 475 261 73 6 chr12 22074906 22075071 -121711384 + HAL1 LINE L1 2332 2507 0 14076 159 24 6 chr12 22075167 22076889 -121709566 + L1MA1 LINE L1 1093 2874 -4691 207 0 0 0 chr12 22076889 22076912 -121709543 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 14076 159 24 6 chr12 22076912 22077642 -121708813 + L1MA1 LINE L1 2874 3589 -3976 543 192 0 0 chr12 22077646 22077745 -121708710 - MSTA LTR MaLR -4 424 326 12533 190 21 21 chr12 22077747 22081836 -121704619 + L1MA1 LINE L1 3640 7721 0 1877 215 26 11 chr12 22082107 22082484 -121703971 - MSTB LTR MaLR -1 425 43 1993 142 19 9 chr12 22082489 22082812 -121703643 - MER61E LTR ERV1 -4 565 240 2535 52 0 10 chr12 22083963 22084271 -121702184 - AluY SINE Alu -6 305 1 358 241 84 0 chr12 22084404 22084487 -121701968 - MIR SINE MIR -78 184 95 2200 100 0 7 chr12 22084881 22085182 -121701273 + AluSq SINE Alu 1 299 -14 535 174 0 0 chr12 22087778 22087864 -121698591 + AluS SINE Alu 1 86 -227 9551 69 4 2 chr12 22087864 22089135 -121697320 - L1P LINE L1 -1611 4535 3262 357 24 0 0 chr12 22090101 22090143 -121696312 + (TG)n Simple_repeat Simple_repeat 2 43 0 210 204 0 20 chr12 22090149 22090198 -121696257 + (TA)n Simple_repeat Simple_repeat 1 48 0 832 220 20 20 chr12 22090198 22090398 -121696057 - L1M3 LINE L1 -377 5791 5592 * 2394 267 28 13 chr12 22090394 22091097 -121695358 - L1M3 LINE L1 -969 5177 4464 428 92 0 0 chr12 22091099 22091164 -121695291 - L1MA3 LINE L1 0 6305 6241 13335 166 28 56 chr12 22091165 22095901 -121690554 - L1PA11 LINE L1 -137 6273 1988 1803 171 0 3 chr12 22095901 22096193 -121690262 - AluJb SINE Alu -21 291 1 13335 166 28 56 chr12 22096193 22098110 -121688345 - L1PA11 LINE L1 -4422 1988 19 239 288 0 0 chr12 22098229 22098288 -121688167 + CT-rich Low_complexity Low_complexity 2 60 0 23 33 0 0 chr12 22100521 22100551 -121685904 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr12 22100801 22100825 -121685630 + AT_rich Low_complexity Low_complexity 1 24 0 783 309 223 14 chr12 22101429 22102012 -121684443 + L2 LINE L2 2 706 -2608 208 250 50 25 chr12 22102014 22102094 -121684361 + L2 LINE L2 2330 2411 -903 21 36 0 0 chr12 22103944 22103972 -121682483 + AT_rich Low_complexity Low_complexity 1 28 0 715 315 81 17 chr12 22104093 22104560 -121681895 - L1M3 LINE L1 -2062 4084 3588 385 299 119 40 chr12 22104619 22105014 -121681441 - L1M3 LINE L1 -2615 3531 3106 401 211 35 35 chr12 22105048 22105162 -121681293 - MLT1C LTR MaLR -301 166 53 586 214 13 0 chr12 22105585 22105908 -121680547 + (TA)n Simple_repeat Simple_repeat 1 327 0 506 278 78 67 chr12 22105908 22106768 -121679687 - L1M3 LINE L1 -3127 3019 2151 2236 232 8 23 chr12 22106921 22107446 -121679009 - LTR40a LTR ERVL -2 517 1 928 236 10 5 chr12 22107446 22107645 -121678810 - HERVL40 LTR ERVL 0 5530 5331 366 331 8 15 chr12 22107645 22107775 -121678680 + LTR40a LTR ERVL 256 384 -135 1673 35 0 0 chr12 22109115 22109316 -121677139 + L1PA4 LINE L1 5948 6148 -7 2199 105 0 3 chr12 22109668 22109963 -121676492 + AluSx SINE Alu 1 294 -18 460 331 93 23 chr12 22110037 22110339 -121676116 + L1MC/D LINE L1 4061 4383 -1763 333 0 0 0 chr12 22110397 22110434 -121676021 + (CA)n Simple_repeat Simple_repeat 2 38 0 20747 160 30 18 chr12 22110468 22111589 -121674866 + L1MA2 LINE L1 12 1118 -6606 1823 132 36 33 chr12 22111589 22111923 -121674532 - MER1B DNA MER1_type 0 337 3 20747 160 30 18 chr12 22111923 22115179 -121671276 + L1MA2 LINE L1 1118 4500 -3224 2268 109 0 3 chr12 22115179 22115483 -121670972 + AluSc SINE Alu 1 303 -6 20747 160 30 18 chr12 22115483 22118262 -121668193 + L1MA2 LINE L1 4500 7245 -479 1134 56 0 0 chr12 22118261 22118404 -121668051 + L1PA2 LINE L1 1 143 -6003 * 23834 28 0 0 chr12 22118405 22122034 -121664421 + L1PA2 LINE L1 2528 6155 0 2932 127 12 22 chr12 22122034 22122169 -121664286 + L1MA2 LINE L1 7233 7368 -355 2014 148 3 0 chr12 22122169 22122467 -121663988 + AluSx SINE Alu 1 299 -13 2932 127 12 22 chr12 22122467 22122827 -121663628 + L1MA2 LINE L1 7368 7723 0 38 98 0 0 chr12 22122827 22122949 -121663506 + AT_rich Low_complexity Low_complexity 1 122 0 252 310 8 0 chr12 22123035 22123164 -121663291 + (TA)n Simple_repeat Simple_repeat 2 131 0 375 23 0 0 chr12 22123194 22123238 -121663217 + (TG)n Simple_repeat Simple_repeat 1 44 0 570 196 14 174 chr12 22123250 22123526 -121662929 + MER21B LTR ERV1 17 248 -615 1008 221 98 96 chr12 22123617 22123993 -121662462 + MER21B LTR ERV1 439 815 -48 295 244 0 24 chr12 22124018 22124141 -121662314 + (TATG)n Simple_repeat Simple_repeat 2 121 0 327 293 53 75 chr12 22124293 22124918 -121661537 + L1MC/D LINE L1 4631 5241 -905 241 238 20 69 chr12 22125061 22125162 -121661293 + L1MC/D LINE L1 5384 5479 -865 255 258 22 67 chr12 22125677 22125766 -121660689 - MIR SINE MIR -81 181 97 280 266 0 0 chr12 22125808 22125887 -121660568 + MER116 DNA Mariner 2 80 0 22 35 0 0 chr12 22126140 22126169 -121660286 + AT_rich Low_complexity Low_complexity 1 29 0 1826 132 7 4 chr12 22126592 22126904 -121659551 - AluSx SINE Alu 0 313 1 2314 103 0 0 chr12 22127032 22127334 -121659121 + AluSg SINE Alu 1 302 -8 285 98 0 0 chr12 22127576 22127617 -121658838 + (TA)n Simple_repeat Simple_repeat 1 41 0 265 327 59 0 chr12 22128789 22128890 -121657565 + MIR SINE MIR 100 206 -56 1638 176 30 36 chr12 22130249 22130550 -121655905 - AluJo SINE Alu -11 301 3 395 329 19 19 chr12 22130737 22130895 -121655560 - MER5A DNA MER1_type -31 158 1 533 65 26 0 chr12 22131202 22131279 -121655176 + (TTTC)n Simple_repeat Simple_repeat 3 81 0 325 253 30 30 chr12 22132131 22132230 -121654225 - MER5B DNA MER1_type 0 178 80 319 133 117 0 chr12 22133062 22133122 -121653333 - MIR SINE MIR -79 183 117 571 223 14 58 chr12 22133146 22133285 -121653170 + MER5B DNA MER1_type 46 178 0 228 136 0 0 chr12 22133765 22133809 -121652646 - LTR66 LTR ERVL -173 437 394 300 207 0 46 chr12 22133809 22133896 -121652559 - L1MC4 LINE L1 -1345 6697 6615 189 171 0 0 chr12 22133900 22133935 -121652520 + (TA)n Simple_repeat Simple_repeat 1 35 0 554 201 0 15 chr12 22133958 22134092 -121652363 + (TATATG)n Simple_repeat Simple_repeat 1 132 0 240 306 124 23 chr12 22136178 22136443 -121650012 + L2 LINE L2 1793 2084 -1230 1704 163 7 23 chr12 22136565 22136866 -121649589 - AluSq SINE Alu -17 296 1 1026 120 0 0 chr12 22136866 22136999 -121649456 - AluSq/x SINE Alu -178 135 3 215 122 0 24 chr12 22137129 22137170 -121649285 + (TA)n Simple_repeat Simple_repeat 1 40 0 197 304 27 45 chr12 22138285 22138397 -121648058 - L2 LINE L2 -5 3308 3199 583 254 92 0 chr12 22138782 22138924 -121647531 - MER63A DNA MER1_type -1 209 55 2250 102 0 3 chr12 22140342 22140636 -121645819 - AluSx SINE Alu -19 293 1 286 271 125 105 chr12 22142192 22142543 -121643912 + HAL1 LINE L1 43 400 -2107 3253 267 95 38 chr12 22142679 22144147 -121642308 + HAL1 LINE L1 613 2164 -343 9458 165 76 36 chr12 22144188 22144620 -121641835 - Tigger1 DNA MER2_type -1 2417 2004 2323 65 0 7 chr12 22144620 22144912 -121641543 - AluY SINE Alu -21 290 1 9458 165 76 36 chr12 22144912 22145687 -121640768 - Tigger1 DNA MER2_type -414 2004 1261 1825 143 0 0 chr12 22145687 22145953 -121640502 + AluSx SINE Alu 35 300 -12 9458 165 76 36 chr12 22145953 22146801 -121639654 - Tigger1 DNA MER2_type -1157 1261 279 1423 179 4 48 chr12 22146807 22147075 -121639380 + AluJb SINE Alu 7 262 -50 1542 172 32 4 chr12 22147113 22147392 -121639063 - Tigger1 DNA MER2_type -2129 289 3 1897 131 7 13 chr12 22147440 22147738 -121638717 + AluSx SINE Alu 1 296 -16 1804 100 35 4 chr12 22147740 22148001 -121638454 + AluY SINE Alu 43 311 0 326 225 119 31 chr12 22148018 22148178 -121638277 + HAL1 LINE L1 2334 2507 0 436 358 83 42 chr12 22150301 22150852 -121635603 + L2 LINE L2 1711 2284 -1030 929 202 145 3 chr12 22150885 22151182 -121635273 + Charlie4a DNA MER1_type 169 507 -1 2269 78 14 3 chr12 22152133 22152427 -121634028 - AluY SINE Alu -13 298 2 970 313 68 28 chr12 22153355 22153710 -121632745 + MER70A LTR ERVL 1 369 -103 26 30 0 0 chr12 22153882 22153915 -121632540 + AT_rich Low_complexity Low_complexity 1 33 0 278 368 81 0 chr12 22153944 22154080 -121632375 + L3 LINE CR1 488 634 -943 2043 139 0 0 chr12 22154493 22154806 -121631649 - AluSx SINE Alu 0 315 3 192 77 0 0 chr12 22154899 22154925 -121631530 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 342 274 12 0 chr12 22155966 22156050 -121630405 + L2 LINE L2 3227 3311 -2 669 235 0 15 chr12 22156124 22156260 -121630195 - MLT1A1 LTR MaLR 0 365 232 4147 113 3 21 chr12 22156262 22156883 -121629572 - MER4B LTR ERV1 0 610 1 18455 110 24 9 chr12 22156883 22157286 -121629169 - MER4B-int LTR ERV1 0 6758 6363 1686 173 3 46 chr12 22157286 22157609 -121628846 + AluJb SINE Alu 3 311 -1 18455 110 24 9 chr12 22157609 22159961 -121626494 - MER4B-int LTR ERV1 -395 6363 3960 2416 115 22 3 chr12 22159961 22160318 -121626137 + THE1B LTR MaLR 1 364 0 9269 100 61 69 chr12 22160318 22161911 -121624544 + THE1B-int LTR MaLR 1 1580 0 2366 117 4 8 chr12 22161913 22162266 -121624189 + THE1B LTR MaLR 3 420 -12 11463 139 38 10 chr12 22162860 22164220 -121622235 - MER4B-int LTR ERV1 -2797 3961 2529 1739 179 20 0 chr12 22164220 22164348 -121622107 + AluJb SINE Alu 1 125 -187 207 0 0 0 chr12 22164348 22164371 -121622084 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1739 179 20 0 chr12 22164371 22164543 -121621912 + AluJb SINE Alu 125 307 -5 11463 139 38 10 chr12 22164543 22165152 -121621303 - MER4B-int LTR ERV1 -4229 2529 1938 608 197 160 21 chr12 22165152 22165340 -121621115 - MER4B-int LTR ERV1 -5123 1475 1262 314 189 0 44 chr12 22165386 22165476 -121620979 - MER4B-int LTR ERV1 -5764 834 749 2537 148 132 22 chr12 22165540 22166047 -121620408 - MER4B-int LTR ERV1 -6035 563 1 3473 148 15 26 chr12 22166050 22166665 -121619790 - MER4B LTR ERV1 0 610 3 1001 216 19 14 chr12 22166678 22166891 -121619564 - MLT1A1 LTR MaLR -146 219 6 191 313 60 0 chr12 22166935 22167002 -121619453 + L3 LINE CR1 882 952 -625 372 240 240 0 chr12 22167694 22167819 -121618636 - MIR SINE MIR -2 260 106 230 311 19 0 chr12 22169357 22169463 -121616992 + (TA)n Simple_repeat Simple_repeat 1 108 0 392 258 33 8 chr12 22169811 22169931 -121616524 - L2 LINE L2 -8 3305 3183 720 149 27 34 chr12 22171084 22171232 -121615223 - L1MB1 LINE L1 -13 6155 6009 1495 198 67 60 chr12 22172211 22172631 -121613824 + MER31B LTR ERV1 14 436 -30 269 370 49 12 chr12 22172991 22173153 -121613302 + MIR SINE MIR 95 262 0 489 331 53 7 chr12 22173153 22173304 -121613151 - L2 LINE L2 0 3272 3115 264 317 58 29 chr12 22173405 22173509 -121612946 + MIR SINE MIR 8 114 -148 353 308 60 11 chr12 22173535 22173717 -121612738 - LTR33A LTR ERVL -7 516 326 311 280 43 81 chr12 22173737 22173923 -121612532 - LTR33A LTR ERVL -344 179 1 1038 225 46 0 chr12 22174966 22175184 -121611271 - MIR SINE MIR -4 258 31 249 222 16 0 chr12 22175244 22175307 -121611148 + L1ME4a LINE L1 5952 6015 -106 22 70 0 0 chr12 22176427 22176470 -121609985 + AT_rich Low_complexity Low_complexity 1 43 0 482 253 112 76 chr12 22176817 22177094 -121609361 - L2 LINE L2 -804 2510 2224 253 235 0 94 chr12 22177324 22177409 -121609046 + MIR SINE MIR 186 262 0 23 68 0 0 chr12 22179797 22179841 -121606614 + AT_rich Low_complexity Low_complexity 1 44 0 2062 133 10 0 chr12 22181373 22181681 -121604774 + AluSx SINE Alu 1 311 -1 352 55 36 0 chr12 22181681 22181736 -121604719 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 316 294 79 89 chr12 22181905 22182121 -121604334 + L2 LINE L2 1772 1986 -1328 3099 99 25 8 chr12 22182121 22182597 -121603858 - L1MA1 LINE L1 -5 6297 5814 316 294 79 89 chr12 22182597 22182672 -121603783 + L2 LINE L2 1986 2060 -1254 1568 178 32 3 chr12 22182794 22183103 -121603352 + L1MC1 LINE L1 6011 6328 -5 451 237 67 77 chr12 22183276 22183470 -121602985 + MLT1K LTR MaLR 397 588 0 337 330 184 36 chr12 22183499 22184047 -121602408 + L2 LINE L2 2623 3272 0 552 273 173 74 chr12 22184048 22184564 -121601891 + L1ME4a LINE L1 5423 6007 -114 2439 74 3 10 chr12 22184564 22184874 -121601581 + AluSc SINE Alu 1 308 -1 552 273 173 74 chr12 22184874 22184954 -121601501 + L1ME4a LINE L1 6007 6078 -43 300 308 145 0 chr12 22184995 22185112 -121601343 - MIR SINE MIR -124 138 5 2344 90 0 7 chr12 22185506 22185816 -121600639 + AluSq SINE Alu 4 311 -2 222 150 0 0 chr12 22187482 22187522 -121598933 + (A)n Simple_repeat Simple_repeat 1 40 0 297 280 149 17 chr12 22187966 22188141 -121598314 + MIR SINE MIR 51 248 -14 21 0 0 0 chr12 22189138 22189159 -121597296 + AT_rich Low_complexity Low_complexity 1 21 0 265 286 12 0 chr12 22189198 22189282 -121597173 + L1ME1 LINE L1 5530 5614 -507 339 234 121 8 chr12 22189288 22189412 -121597043 + L1MEd LINE L1 8 145 -5974 351 291 117 25 chr12 22189600 22190036 -121596419 + L1MEd LINE L1 561 1036 -5083 369 284 157 26 chr12 22190068 22190297 -121596158 + MIR SINE MIR 4 262 0 542 289 69 92 chr12 22190300 22191027 -121595428 + L1MEd LINE L1 2093 2802 -3327 1994 182 70 12 chr12 22191116 22191529 -121594926 + MLT1C LTR MaLR 3 439 -28 185 263 105 0 chr12 22191647 22191704 -121594751 + L3 LINE CR1 1502 1564 -13 203 175 25 0 chr12 22192003 22192043 -121594412 + (GGGTG)n Simple_repeat Simple_repeat 5 45 0 21 36 0 0 chr12 22192527 22192555 -121593900 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr12 22192649 22192677 -121593778 + AT_rich Low_complexity Low_complexity 1 28 0 468 301 86 93 chr12 22192915 22193357 -121593098 + HAL1 LINE L1 114 552 -1955 349 320 13 45 chr12 22193445 22193601 -121592854 + HAL1 LINE L1 689 839 -1668 1420 60 0 0 chr12 22193605 22193772 -121592683 + AluY SINE Alu 131 297 -14 1174 236 38 40 chr12 22193787 22194160 -121592295 + L1ME1 LINE L1 5629 6000 -166 638 196 12 12 chr12 22194184 22194347 -121592108 + L1MA10 LINE L1 6163 6325 -9 40213 71 7 3 chr12 22194435 22200567 -121585888 + L1PA6 LINE L1 1 6154 0 1330 281 168 28 chr12 22200682 22201707 -121584748 + HAL1 LINE L1 972 2139 -368 650 241 41 36 chr12 22201722 22202088 -121584367 + L1MC5 LINE L1 6894 7233 -728 1518 217 71 35 chr12 22202147 22202741 -121583714 + L1MC5 LINE L1 7260 7843 -118 232 283 64 84 chr12 22202857 22203108 -121583347 + HAL1 LINE L1 2220 2465 -42 24 53 0 0 chr12 22203123 22203161 -121583294 + AT_rich Low_complexity Low_complexity 1 38 0 307 335 124 10 chr12 22203232 22203426 -121583029 + L2 LINE L2 2458 2673 -641 418 272 77 2 chr12 22203436 22203597 -121582858 + MIR SINE MIR 33 203 -45 454 248 20 0 chr12 22203693 22203794 -121582661 - MER5A DNA MER1_type -77 112 10 462 300 62 0 chr12 22204151 22204311 -121582144 + MIR SINE MIR 66 235 -27 2123 35 0 0 chr12 22204338 22204592 -121581863 - L1PA4 LINE L1 0 6155 5902 204 375 31 10 chr12 22204742 22204838 -121581617 + MIR SINE MIR 24 121 -87 2573 154 25 25 chr12 22204863 22205349 -121581106 - MER66B LTR ERV1 0 486 1 2212 113 3 3 chr12 22205734 22206043 -121580412 + AluSp SINE Alu 5 313 0 263 318 0 0 chr12 22206330 22206396 -121580059 + L2 LINE L2 3225 3290 -23 1555 182 27 24 chr12 22208802 22208829 -121577626 - AluJo SINE Alu -12 300 275 210 37 0 0 chr12 22208829 22208856 -121577599 + (TC)n Simple_repeat Simple_repeat 2 28 0 1555 182 27 24 chr12 22208856 22209125 -121577330 - AluJo SINE Alu -37 275 3 1773 187 12 0 chr12 22211408 22211751 -121574704 - L1MB1 LINE L1 -1 6167 5821 23 0 0 0 chr12 22211904 22211927 -121574528 + AT_rich Low_complexity Low_complexity 1 23 0 2371 82 3 0 chr12 22212806 22213100 -121573355 + AluSg SINE Alu 3 297 -13 1591 137 3 109 chr12 22214816 22215137 -121571318 + MER50 LTR ERV1 1 287 -447 5509 147 3 6 chr12 22215137 22215525 -121570930 + L1PB3 LINE L1 5104 5492 -662 2256 107 3 3 chr12 22215525 22215834 -121570621 + AluSc SINE Alu 1 309 0 5509 147 3 6 chr12 22215834 22216499 -121569956 + L1PB3 LINE L1 5492 6154 0 2165 107 7 0 chr12 22216533 22216832 -121569623 + AluSg SINE Alu 9 309 -1 241 355 54 32 chr12 22216850 22216943 -121569512 - MIR SINE MIR -97 111 17 261 329 98 30 chr12 22217762 22217926 -121568529 + L2 LINE L2 3094 3268 -4 27 0 0 0 chr12 22217950 22217977 -121568478 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr12 22218722 22218759 -121567696 + AT_rich Low_complexity Low_complexity 1 37 0 2382 79 0 0 chr12 22218769 22219074 -121567381 - AluY SINE Alu -6 305 1 270 333 91 38 chr12 22220233 22220365 -121566090 + MIR SINE MIR 88 226 -36 2427 125 6 3 chr12 22220365 22220724 -121565731 + THE1B LTR MaLR 1 360 -4 10131 109 37 37 chr12 22220728 22222308 -121564147 + THE1B-int LTR MaLR 1 1580 0 2346 118 28 3 chr12 22222308 22222663 -121563792 + THE1B LTR MaLR 1 364 0 215 121 61 45 chr12 22223892 22223958 -121562497 + (TTATA)n Simple_repeat Simple_repeat 4 70 0 282 106 0 21 chr12 22223974 22224021 -121562434 + MADE1 DNA Mariner 35 80 0 671 271 19 67 chr12 22226752 22227021 -121559434 + Charlie2 DNA MER1_type 7 262 -2520 2165 222 86 27 chr12 22227308 22228041 -121558414 + Charlie2b DNA MER1_type 1333 2108 -674 1595 158 54 14 chr12 22228281 22228376 -121558079 + AluJb SINE Alu 23 113 -199 225 0 0 0 chr12 22228376 22228401 -121558054 + (CA)n Simple_repeat Simple_repeat 2 26 0 1595 158 54 14 chr12 22228401 22228558 -121557897 + AluJb SINE Alu 113 289 -23 276 30 0 0 chr12 22228558 22228591 -121557864 + (CA)n Simple_repeat Simple_repeat 2 34 0 1595 158 54 14 chr12 22228591 22228616 -121557839 + AluJb SINE Alu 289 312 0 42589 35 21 1 chr12 22229019 22235049 -121551406 + L1PA2 LINE L1 1 6154 -1 383 304 67 35 chr12 22235058 22235176 -121551279 + L1MC/D LINE L1 4068 4181 -1965 23 33 0 0 chr12 22235176 22235206 -121551249 + AT_rich Low_complexity Low_complexity 1 30 0 383 304 67 35 chr12 22235206 22235574 -121550881 + L1MC/D LINE L1 4181 4604 -1542 219 224 12 24 chr12 22235589 22235674 -121550781 + T-rich Low_complexity Low_complexity 2 85 0 425 287 98 68 chr12 22235935 22236537 -121549918 + L1MC/D LINE L1 4881 5495 -768 207 0 0 0 chr12 22237721 22237744 -121548711 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr12 22238237 22238260 -121548195 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 6221 106 26 1 chr12 22238263 22239394 -121547061 - L1PA10 LINE L1 -23 6145 4994 2253 118 52 30 chr12 22239384 22239789 -121546666 + L1PA10 LINE L1 4598 5011 -1135 * 295 233 146 0 chr12 22239856 22239959 -121546496 + MIR SINE MIR 60 177 -85 440 285 49 14 chr12 22239969 22240113 -121546342 - L2 LINE L2 -5 3308 3160 291 104 0 0 chr12 22240168 22240216 -121546239 + (TG)n Simple_repeat Simple_repeat 1 48 0 677 261 143 9 chr12 22240545 22240775 -121545680 - MIR SINE MIR 0 262 2 776 296 110 49 chr12 22241082 22241528 -121544927 - L2 LINE L2 -144 3169 2667 1818 148 16 35 chr12 22241528 22241846 -121544609 + AluJb SINE Alu 1 312 0 776 296 110 49 chr12 22241846 22242022 -121544433 - L2 LINE L2 -646 2667 2503 333 68 0 0 chr12 22242720 22242764 -121543691 + (TG)n Simple_repeat Simple_repeat 1 44 0 694 240 6 34 chr12 22243347 22243526 -121542929 + MER58A DNA MER1_type 12 185 -39 22 0 0 0 chr12 22243527 22243549 -121542906 + AT_rich Low_complexity Low_complexity 1 22 0 748 273 103 75 chr12 22244441 22245697 -121540758 - L1ME3 LINE L1 -306 5925 4617 1628 147 75 18 chr12 22245697 22245976 -121540479 - AluJb SINE Alu -17 295 1 748 273 103 75 chr12 22245976 22246042 -121540413 - L1ME3 LINE L1 -1614 4617 4554 2273 96 3 0 chr12 22246110 22246401 -121540054 + AluSx SINE Alu 3 294 -18 21 36 0 0 chr12 22247088 22247116 -121539339 + AT_rich Low_complexity Low_complexity 1 28 0 1905 121 0 11 chr12 22247236 22247517 -121538938 - AluSx SINE Alu 0 312 35 744 258 22 13 chr12 22248018 22248247 -121538208 + PABL_B LTR ERV1 437 667 0 251 175 0 0 chr12 22248247 22248287 -121538168 - AluSx SINE Alu -262 40 1 246 211 0 0 chr12 22248304 22248356 -121538099 - L1ME3 LINE L1 -3106 3109 3058 414 301 82 50 chr12 22248359 22249054 -121537401 - L1ME3 LINE L1 -3182 3033 2317 328 320 58 13 chr12 22249070 22249226 -121537229 - L1ME3 LINE L1 -4084 2312 2150 320 335 63 37 chr12 22249496 22249845 -121536610 - HAL1 LINE L1 -849 1658 1301 378 323 78 22 chr12 22249851 22250083 -121536372 - L1ME3 LINE L1 -5011 1194 950 21 57 0 0 chr12 22250099 22250134 -121536321 + AT_rich Low_complexity Low_complexity 1 35 0 270 0 0 0 chr12 22250366 22250396 -121536059 + (CA)n Simple_repeat Simple_repeat 1 30 0 581 198 0 0 chr12 22250622 22250723 -121535732 - 7SLRNA srpRNA srpRNA -9 311 211 423 264 107 30 chr12 22250760 22250957 -121535498 + HAL1 LINE L1 1712 1923 -584 856 266 58 54 chr12 22251134 22251619 -121534836 + HAL1 LINE L1 1978 2464 -43 25 65 0 0 chr12 22251636 22251682 -121534773 + AT_rich Low_complexity Low_complexity 1 46 0 2074 133 42 33 chr12 22252410 22252771 -121533684 - THE1B LTR MaLR 0 364 1 663 235 46 7 chr12 22252832 22252985 -121533470 + MER58 DNA MER1_type 1 159 -2261 545 215 0 9 chr12 22252989 22253096 -121533359 + L1MDa LINE L1 21 126 -6414 458 216 93 0 chr12 22253106 22253203 -121533252 + L1MDa LINE L1 250 355 -6185 42757 34 22 1 chr12 22253225 22259244 -121527211 + L1PA2 LINE L1 11 6155 0 908 286 33 94 chr12 22259246 22259701 -121526754 + L2 LINE L2 2058 2484 -830 314 291 8 34 chr12 22259901 22260018 -121526437 - MER94 DNA DNA -19 115 2 630 291 189 25 chr12 22260021 22260706 -121525749 + L2 LINE L2 2507 3313 0 23 0 0 0 chr12 22261191 22261214 -121525241 + AT_rich Low_complexity Low_complexity 1 23 0 739 249 79 84 chr12 22261584 22262038 -121524417 - MLT1J LTR MaLR -49 462 11 1779 181 3 19 chr12 22263223 22263532 -121522923 - AluJo SINE Alu -8 304 1 1535 185 57 26 chr12 22264070 22264403 -121522052 + LTR52 LTR ERVL 1 349 -72 351 44 0 0 chr12 22264403 22264448 -121522007 + (TG)n Simple_repeat Simple_repeat 1 45 0 1535 185 57 26 chr12 22264448 22264498 -121521957 + LTR52 LTR ERVL 349 396 -25 186 393 24 0 chr12 22264710 22264794 -121521661 - L2 LINE L2 -8 3305 3220 1867 171 0 3 chr12 22264997 22265302 -121521153 - AluJb SINE Alu -8 304 1 217 394 87 0 chr12 22265367 22265494 -121520961 - L2 LINE L2 -581 2733 2596 3407 169 83 74 chr12 22266321 22266837 -121519618 + MER63C DNA MER1_type 7 536 -524 3337 62 16 5 chr12 22266837 22267285 -121519170 - L1PA12 LINE L1 0 6168 5716 3407 169 83 74 chr12 22267285 22267684 -121518771 + MER63C DNA MER1_type 536 930 0 746 186 150 0 chr12 22267957 22268124 -121518331 + LTR47A LTR ERVL 261 452 0 182 316 53 21 chr12 22268577 22268672 -121517783 - L2 LINE L2 -1033 2281 2184 561 301 68 9 chr12 22268732 22268951 -121517504 - MIR SINE MIR -25 237 6 216 322 126 82 chr12 22270132 22270474 -121515981 - L2 LINE L2 -52 3220 2864 205 221 15 59 chr12 22271221 22271289 -121515166 + MIR3 SINE MIR 120 184 -24 2018 117 16 10 chr12 22272139 22272448 -121514007 - AluSx SINE Alu -1 311 1 221 298 175 9 chr12 22272817 22272931 -121513524 - L2 LINE L2 -1 3271 3139 183 303 49 56 chr12 22273422 22273496 -121512959 - L2 LINE L2 -1317 1997 1924 770 181 0 23 chr12 22273496 22273629 -121512826 + FLAM_C SINE Alu 2 131 -2 183 303 49 56 chr12 22273629 22273716 -121512739 - L2 LINE L2 -1390 1924 1837 484 98 31 0 chr12 22274554 22274641 -121511814 - L1MA8 LINE L1 -23 6289 6186 2056 160 33 13 chr12 22274641 22275035 -121511420 - L1 LINE L1 -1961 4185 3784 2274 86 0 3 chr12 22275042 22275332 -121511123 - AluY SINE Alu -22 289 1 1127 280 115 20 chr12 22275332 22276246 -121510209 - L1M2c LINE L1 -4557 2541 1534 380 368 6 23 chr12 22276914 22277088 -121509367 - L1M2c LINE L1 -5968 1130 960 253 296 59 7 chr12 22277512 22277664 -121508791 - Charlie7 DNA MER1_type -1 2611 2452 202 267 199 30 chr12 22278119 22278250 -121508205 + MIR SINE MIR 46 198 -64 189 302 0 38 chr12 22278310 22278363 -121508092 - L2 LINE L2 -19 3294 3244 301 277 75 0 chr12 22278549 22278643 -121507812 - MIR SINE MIR -2 260 160 361 117 0 17 chr12 22278643 22278703 -121507752 + Charlie1 DNA MER1_type 2700 2758 -3 376 307 187 4 chr12 22278705 22278946 -121507509 - L2 LINE L2 -2032 1282 998 255 386 111 36 chr12 22279701 22280115 -121506340 - L2 LINE L2 -16 3256 2812 2375 61 3 7 chr12 22280152 22280449 -121506006 + AluY SINE Alu 1 296 -15 1770 151 0 14 chr12 22280651 22280929 -121505526 + AluJo SINE Alu 14 287 -25 23 0 0 0 chr12 22280931 22280954 -121505501 + AT_rich Low_complexity Low_complexity 1 23 0 2272 65 21 10 chr12 22281715 22282005 -121504450 + AluY SINE Alu 2 294 -17 23 0 0 0 chr12 22282870 22282893 -121503562 + AT_rich Low_complexity Low_complexity 1 23 0 2391 63 3 38 chr12 22283859 22284177 -121502278 - AluY SINE Alu -4 307 1 502 284 56 35 chr12 22284816 22285013 -121501442 - MIR SINE MIR -42 220 20 853 28 9 0 chr12 22285262 22285369 -121501086 - L1PA5 LINE L1 -11 6143 6036 665 242 135 6 chr12 22285507 22285685 -121500770 - MIR SINE MIR -54 208 8 33 66 0 0 chr12 22286169 22286230 -121500225 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr12 22286375 22286398 -121500057 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr12 22286454 22286497 -121499958 + AT_rich Low_complexity Low_complexity 1 43 0 245 194 48 48 chr12 22286555 22286617 -121499838 + Charlie8 DNA MER1_type 2356 2417 0 23 54 0 0 chr12 22287189 22287226 -121499229 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr12 22289373 22289395 -121497060 + AT_rich Low_complexity Low_complexity 1 22 0 200 86 29 0 chr12 22289453 22289488 -121496967 + (TA)n Simple_repeat Simple_repeat 1 36 0 27 0 0 0 chr12 22289700 22289727 -121496728 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr12 22289971 22289993 -121496462 + AT_rich Low_complexity Low_complexity 1 22 0 14097 127 57 10 chr12 22290355 22291521 -121494934 - Tigger1 DNA MER2_type 0 2418 1308 2169 126 105 10 chr12 22291521 22291910 -121494545 - MSTA LTR MaLR 0 428 3 14097 127 57 10 chr12 22291910 22293042 -121493413 - Tigger1 DNA MER2_type -1110 1308 12 3983 204 64 11 chr12 22293053 22293837 -121492618 + MER21B LTR ERV1 38 862 -1 248 314 12 23 chr12 22294275 22294361 -121492094 - L2 LINE L2 -5 3308 3224 2113 93 4 7 chr12 22294406 22294730 -121491725 - AluSx SINE Alu 0 327 5 191 355 45 18 chr12 22295434 22295544 -121490911 - MIR SINE MIR -78 130 18 22 0 0 0 chr12 22296998 22297020 -121489435 + AT_rich Low_complexity Low_complexity 1 22 0 717 186 137 0 chr12 22297131 22297314 -121489141 + MER3 DNA MER1_type 1 208 -1 2220 110 0 10 chr12 22297418 22297719 -121488736 + AluSq SINE Alu 3 300 -13 304 349 46 0 chr12 22298574 22298683 -121487772 - MIR SINE MIR -48 214 101 12064 31 31 0 chr12 22298736 22300899 -121485556 - L1PA5 LINE L1 0 6154 3918 1534 95 40 5 chr12 22303276 22303498 -121482957 - MER30 DNA MER1_type 0 230 1 1016 74 74 7 chr12 22303658 22303807 -121482648 - MER30 DNA MER1_type -71 159 1 21 36 0 0 chr12 22304928 22304956 -121481499 + AT_rich Low_complexity Low_complexity 1 28 0 1128 162 118 90 chr12 22306305 22306651 -121479804 - MER41B LTR ERV1 -20 615 260 373 224 35 24 chr12 22307148 22307233 -121479222 + MER7A DNA MER2_type 1 84 -262 278 136 45 0 chr12 22307230 22307274 -121479181 - Alu SINE Alu -11 290 245 * 1547 130 88 4 chr12 22307262 22307523 -121478932 + MER7A DNA MER2_type 66 346 0 498 174 68 45 chr12 22307736 22307868 -121478587 - MLT1D LTR MaLR 0 505 371 639 151 38 88 chr12 22307874 22308033 -121478422 - MLT1E2 LTR MaLR -475 151 1 408 273 30 36 chr12 22310191 22310356 -121476099 + MER103 DNA DNA 3 166 0 376 281 151 50 chr12 22312476 22312675 -121473780 - L2 LINE L2 -189 3083 2865 2250 247 81 5 chr12 22312677 22313260 -121473195 + MLT2E LTR ERVL 1 627 -1 2375 96 0 0 chr12 22313360 22313662 -121472793 - AluSx SINE Alu -10 302 1 376 279 60 60 chr12 22313928 22314111 -121472344 - L2 LINE L2 -3 3310 3128 768 304 109 15 chr12 22314121 22314516 -121471939 - L2 LINE L2 -424 2890 2459 345 225 121 47 chr12 22314539 22314845 -121471610 + LTR50 LTR ERVL 27 410 -385 804 214 134 0 chr12 22314849 22315087 -121471368 + LTR50 LTR ERVL 524 793 -2 29 28 0 0 chr12 22315619 22315655 -121470800 + AT_rich Low_complexity Low_complexity 1 36 0 395 216 0 0 chr12 22317204 22317278 -121469177 + Tigger4(Zombi) DNA MER2_type 2658 2731 0 23 33 0 0 chr12 22317953 22317983 -121468472 + AT_rich Low_complexity Low_complexity 1 30 0 1562 190 103 150 chr12 22318564 22319292 -121467163 + L1MC5 LINE L1 6728 7376 -585 387 91 30 0 chr12 22319292 22319358 -121467097 + L1PA10 LINE L1 6101 6168 0 1562 190 103 150 chr12 22319358 22319863 -121466592 + L1MC5 LINE L1 7376 7903 -58 1646 190 34 0 chr12 22320055 22320381 -121466074 - MER58B DNA MER1_type -4 337 1 2219 115 3 10 chr12 22320668 22320982 -121465473 - AluSx SINE Alu 0 312 1 1180 255 37 12 chr12 22321686 22322005 -121464450 + MLT1A1 LTR MaLR 33 365 0 1225 327 88 17 chr12 22322020 22322769 -121463686 + L2 LINE L2 1746 2547 -767 229 306 28 0 chr12 22322773 22322845 -121463610 + L2 LINE L2 2681 2754 -560 296 319 92 21 chr12 22322952 22323093 -121463362 + L2 LINE L2 2914 3064 -208 946 202 22 0 chr12 22323200 22323383 -121463072 + MER58A DNA MER1_type 37 223 -1 389 236 260 0 chr12 22323391 22323518 -121462937 + MER5A DNA MER1_type 24 183 -6 367 293 111 10 chr12 22323527 22323626 -121462829 + L2 LINE L2 3150 3258 -14 549 109 11 0 chr12 22323711 22323803 -121462652 + L1MA5 LINE L1 6064 6156 -144 993 131 12 0 chr12 22323882 22324042 -121462413 + L1PA16 LINE L1 6000 6161 -5 27 62 0 0 chr12 22324107 22324155 -121462300 + AT_rich Low_complexity Low_complexity 1 48 0 1671 176 0 30 chr12 22324577 22324878 -121461577 + AluJo SINE Alu 6 297 -15 498 300 74 16 chr12 22325837 22326080 -121460375 + MIR SINE MIR 3 259 -3 1348 261 133 24 chr12 22326573 22327120 -121459335 + MLT2F LTR ERVL 57 663 0 346 316 38 15 chr12 22327133 22327266 -121459189 + ERVL-F LTR ERVL 24 159 -5605 7101 282 98 37 chr12 22327454 22327938 -121458517 + ERVL-F LTR ERVL 389 842 -4922 2408 165 21 5 chr12 22327938 22328357 -121458098 - MSTB LTR MaLR 0 426 1 7101 282 98 37 chr12 22328357 22329324 -121457131 + ERVL-F LTR ERVL 842 1748 -4016 2477 66 7 0 chr12 22329324 22329629 -121456826 + AluY SINE Alu 1 307 -4 7101 282 98 37 chr12 22329629 22332922 -121453533 + ERVL-F LTR ERVL 1748 5403 -361 316 213 101 136 chr12 22332980 22333149 -121453306 + ERVL-F LTR ERVL 5539 5701 -63 1416 192 31 3 chr12 22333163 22333454 -121453001 + L1MB4 LINE L1 5882 6180 0 187 290 70 80 chr12 22333977 22334077 -121452378 + MIR SINE MIR 55 153 -55 241 286 89 18 chr12 22334668 22334780 -121451675 + L2 LINE L2 3143 3262 -10 236 295 139 36 chr12 22337241 22337407 -121449048 - MIR SINE MIR -52 210 28 24 32 0 0 chr12 22338176 22338207 -121448248 + AT_rich Low_complexity Low_complexity 1 31 0 555 300 75 25 chr12 22338977 22339217 -121447238 + MIR SINE MIR 4 255 -7 271 306 0 0 chr12 22340052 22340124 -121446331 + L2 LINE L2 3189 3260 -12 25 31 0 0 chr12 22340991 22341023 -121445432 + AT_rich Low_complexity Low_complexity 1 32 0 229 229 0 0 chr12 22341523 22341571 -121444884 - L1MC4 LINE L1 -1339 6703 6656 342 67 0 0 chr12 22342887 22342932 -121443523 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 2388 91 7 0 chr12 22343126 22343434 -121443021 + AluSx SINE Alu 1 310 -2 210 328 66 62 chr12 22343471 22343727 -121442728 - L2 LINE L2 -2 3311 3055 4422 175 45 16 chr12 22344910 22345727 -121440728 - MER21B LTR ERV1 -21 842 2 1844 139 33 26 chr12 22346800 22347102 -121439353 + AluJb SINE Alu 1 304 -8 206 357 45 0 chr12 22347124 22347236 -121439219 + MIR SINE MIR 32 148 -60 576 129 0 0 chr12 22347537 22347622 -121438833 - AluJ/FLAM SINE Alu -227 85 1 731 272 6 0 chr12 22347660 22347833 -121438622 + FRAM SINE Alu 1 174 -2 341 274 44 35 chr12 22347848 22347961 -121438494 + L2 LINE L2 3185 3298 -15 25 31 0 0 chr12 22349080 22349112 -121437343 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 22349334 22349364 -121437091 + AT_rich Low_complexity Low_complexity 1 30 0 217 358 25 25 chr12 22352443 22352524 -121433931 - L2 LINE L2 -6 3266 3186 213 208 62 0 chr12 22353642 22353690 -121432765 + L2 LINE L2 3221 3271 -1 2164 109 26 0 chr12 22353736 22354040 -121432415 - AluSq SINE Alu -1 312 1 623 215 171 25 chr12 22356920 22357078 -121429377 + MER5A DNA MER1_type 9 189 0 1644 186 48 23 chr12 22357096 22357450 -121429005 + MLT1A1 LTR MaLR 1 363 -2 315 250 39 0 chr12 22357562 22357666 -121428789 + L2 LINE L2 1564 1671 -1643 274 141 0 90 chr12 22357681 22357759 -121428696 - LTR67 LTR ERVL -14 543 473 * 277 318 103 52 chr12 22357752 22357985 -121428470 - LTR67 LTR ERVL -212 345 101 561 211 0 0 chr12 22358158 22358262 -121428193 + FLAM_C SINE Alu 18 121 -22 747 309 129 67 chr12 22358305 22359114 -121427341 + L2 LINE L2 1750 2608 -706 216 373 31 12 chr12 22359126 22359287 -121427168 + L2 LINE L2 2805 2968 -346 1362 195 39 12 chr12 22359441 22359698 -121426757 + Tigger7 DNA MER2_type 1 264 -2223 356 177 25 25 chr12 22359699 22359778 -121426677 + Tigger7 DNA MER2_type 2490 2568 -19 400 306 25 38 chr12 22359816 22359976 -121426479 + L2 LINE L2 3156 3313 0 306 293 159 71 chr12 22361661 22362152 -121424303 - L1M2 LINE L1 -5847 1002 469 344 279 18 27 chr12 22363181 22363292 -121423163 - MER5A DNA MER1_type -56 133 24 204 332 146 32 chr12 22363285 22363505 -121422950 - L2 LINE L2 -1055 2259 2015 * 21 36 0 0 chr12 22364086 22364114 -121422341 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr12 22364318 22364343 -121422112 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 198 191 0 0 chr12 22366145 22366187 -121420268 + (CA)n Simple_repeat Simple_repeat 2 43 0 197 298 0 18 chr12 22367518 22367575 -121418880 - MIR SINE MIR -66 196 141 2149 125 15 21 chr12 22367769 22368097 -121418358 - MLT1A1 LTR MaLR 0 365 40 432 183 14 0 chr12 22368097 22368168 -121418287 + Tigger5 DNA MER2_type 1 72 -2251 293 246 0 0 chr12 22368173 22368230 -121418225 - Tigger5 DNA MER2_type -6 2317 2261 1815 171 3 19 chr12 22368238 22368669 -121417786 + AluSx SINE Alu 1 426 0 290 182 0 0 chr12 22368675 22368719 -121417736 + Tigger5 DNA MER2_type 2279 2322 -1 299 95 0 0 chr12 22368719 22368761 -121417694 - MLT1A1 LTR MaLR -323 42 1 212 259 0 52 chr12 22368894 22368952 -121417503 - L2 LINE L2 -11 3261 3207 543 296 100 12 chr12 22371362 22371602 -121414853 - MIR SINE MIR 0 262 2 211 250 0 0 chr12 22372086 22372130 -121414325 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 359 368 32 7 chr12 22372843 22372998 -121413457 - L3 LINE CR1 -26 1551 1393 196 232 74 74 chr12 22373713 22373808 -121412647 + MIR SINE MIR 87 181 -81 281 274 36 0 chr12 22374862 22374946 -121411509 + MER5B DNA MER1_type 88 174 -4 1965 140 16 3 chr12 22374999 22375307 -121411148 + AluJb SINE Alu 1 312 0 222 118 0 0 chr12 22375460 22375494 -121410961 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2139 145 3 3 chr12 22375707 22376051 -121410404 - L1PA16 LINE L1 -2 6164 5821 1953 128 7 14 chr12 22376062 22376359 -121410096 - AluSx SINE Alu -17 295 1 914 238 21 21 chr12 22376699 22376939 -121409516 - MIR SINE MIR -21 241 2 2347 45 10 16 chr12 22377584 22377892 -121408563 - L1PA8 LINE L1 -2 6170 5865 2124 130 3 0 chr12 22379170 22379469 -121406986 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr12 22379703 22379725 -121406730 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 27 73 0 0 chr12 22379904 22379959 -121406496 + AT_rich Low_complexity Low_complexity 1 55 0 690 265 93 0 chr12 22380987 22381191 -121405264 + L2 LINE L2 2579 2801 -513 1466 225 52 34 chr12 22381191 22381329 -121405126 + MER63C DNA MER1_type 1 135 -926 3737 144 31 0 chr12 22381329 22381948 -121404507 + L1MC1 LINE L1 5694 6331 -2 1466 225 52 34 chr12 22381948 22382659 -121403796 + MER63C DNA MER1_type 135 926 -5 448 77 15 0 chr12 22382688 22382753 -121403702 + L1MC1 LINE L1 6267 6332 -1 273 211 0 0 chr12 22382758 22382815 -121403640 + MER63 DNA MER1_type 137 193 -868 939 197 14 28 chr12 22382903 22383116 -121403339 - MER63 DNA MER1_type -297 763 554 1869 252 36 4 chr12 22383403 22384320 -121402135 - L1MC4 LINE L1 -221 7821 6712 360 0 0 0 chr12 22384324 22384364 -121402091 + (CA)n Simple_repeat Simple_repeat 2 41 0 2067 115 3 3 chr12 22384670 22384958 -121401497 + AluSx SINE Alu 1 288 -24 1259 26 0 0 chr12 22385096 22385248 -121401207 - L1PA3 LINE L1 -92 6063 5912 187 351 0 0 chr12 22386077 22386151 -121400304 + MIR SINE MIR 168 241 -21 236 397 11 39 chr12 22386729 22386908 -121399547 + L2 LINE L2 2909 3082 -190 491 248 124 51 chr12 22386992 22387054 -121399401 - MIR SINE MIR -6 256 200 951 182 0 0 chr12 22387054 22387208 -121399247 - FRAM SINE Alu -12 154 1 491 248 124 51 chr12 22387208 22387388 -121399067 - MIR SINE MIR -62 200 5 188 67 33 0 chr12 22387780 22387810 -121398645 + (CA)n Simple_repeat Simple_repeat 2 32 0 848 158 6 0 chr12 22388100 22388271 -121398184 + GA-rich Low_complexity Low_complexity 4 175 0 719 276 43 5 chr12 22388276 22388486 -121397969 + LTR16B LTR ERVL 240 457 -7 2080 181 76 9 chr12 22389462 22389894 -121396561 + LOR1b LTR ERV1 1 461 0 231 362 92 43 chr12 22390051 22390169 -121396286 + L2 LINE L2 2043 2154 -1160 1745 159 34 7 chr12 22390169 22390465 -121395990 - AluJb SINE Alu -8 304 1 231 362 92 43 chr12 22390465 22390791 -121395664 + L2 LINE L2 2154 2509 -805 290 312 43 32 chr12 22391220 22391313 -121395142 + L2 LINE L2 3159 3252 -20 2265 96 0 3 chr12 22391612 22391904 -121394551 + AluSg SINE Alu 1 291 -19 3954 141 30 64 chr12 22391904 22392706 -121393749 + Ricksha_b DNA DNA 293 1067 -187 839 152 89 11 chr12 22392764 22392955 -121393500 + Ricksha_b DNA DNA 1433 1638 -8 26 50 0 0 chr12 22394843 22394883 -121391572 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr12 22395254 22395292 -121391163 + AT_rich Low_complexity Low_complexity 1 38 0 268 284 18 9 chr12 22395994 22396103 -121390352 + L1MC5 LINE L1 7784 7893 -68 29 28 0 0 chr12 22396674 22396710 -121389745 + AT_rich Low_complexity Low_complexity 1 36 0 320 363 117 0 chr12 22397096 22397267 -121389188 - MIR SINE MIR -20 242 52 189 0 0 0 chr12 22398712 22398733 -121387722 + (A)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr12 22399556 22399576 -121386879 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr12 22400320 22400342 -121386113 + AT_rich Low_complexity Low_complexity 1 22 0 644 285 92 4 chr12 22400494 22400722 -121385733 - MIR SINE MIR -12 250 3 1662 106 0 0 chr12 22401087 22401304 -121385151 + AluSg/x SINE Alu 85 301 -11 21 36 0 0 chr12 22401472 22401500 -121384955 + GC_rich Low_complexity Low_complexity 1 28 0 303 246 30 52 chr12 22401593 22401727 -121384728 + C-rich Low_complexity Low_complexity 2 132 0 2366 88 0 0 chr12 22402283 22402580 -121383875 - AluSg1 SINE Alu -12 297 1 261 238 0 69 chr12 22402632 22402733 -121383722 + LTR67 LTR ERVL 464 557 0 218 365 157 18 chr12 22402961 22403470 -121382985 + L2 LINE L2 1589 2168 -1146 445 253 82 78 chr12 22403506 22403763 -121382692 + MIR SINE MIR 5 262 0 21 36 0 0 chr12 22404391 22404419 -121382036 + AT_rich Low_complexity Low_complexity 1 28 0 193 271 0 21 chr12 22405413 22405461 -121380994 - L2 LINE L2 -2 3270 3224 483 278 96 37 chr12 22406574 22406761 -121379694 - MIR SINE MIR -28 234 37 266 369 56 34 chr12 22407423 22407656 -121378799 - L2 LINE L2 -391 2923 2686 * 396 287 23 8 chr12 22407651 22407780 -121378675 + MIR SINE MIR 132 262 0 429 256 186 0 chr12 22408043 22408242 -121378213 - L1MCc LINE L1 -4900 1523 1288 2145 104 0 3 chr12 22408458 22408757 -121377698 + AluSc SINE Alu 1 298 -11 270 333 19 9 chr12 22410032 22410140 -121376315 - MIR3 SINE MIR -3 205 97 23 33 0 0 chr12 22411419 22411449 -121375006 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr12 22411501 22411536 -121374919 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 22411848 22411869 -121374586 + AT_rich Low_complexity Low_complexity 1 21 0 302 248 16 27 chr12 22412242 22412333 -121374122 - MER5A DNA MER1_type 0 189 92 21 0 0 0 chr12 22413735 22413756 -121372699 + AT_rich Low_complexity Low_complexity 1 21 0 182 138 0 0 chr12 22414070 22414099 -121372356 - L2 LINE L2 -16 3297 3269 216 354 133 54 chr12 22414691 22415958 -121370497 + L2 LINE L2 665 2032 -1282 1887 204 112 7 chr12 22415960 22416120 -121370335 - MLT1D LTR MaLR -9 496 354 2181 123 0 22 chr12 22416120 22416437 -121370018 - AluSq SINE Alu -3 310 1 1887 204 112 7 chr12 22416437 22416703 -121369752 - MLT1D LTR MaLR -151 354 25 259 312 199 16 chr12 22416847 22417033 -121369422 + L2 LINE L2 2197 2416 -898 1256 217 112 43 chr12 22417958 22418378 -121368077 + LTR2 LTR ERV1 1 449 0 194 329 13 0 chr12 22418593 22418672 -121367783 + MIR SINE MIR 92 171 -91 807 229 50 0 chr12 22418708 22418948 -121367507 + L1PB4 LINE L1 5073 5324 -822 2891 113 12 0 chr12 22418950 22419357 -121367098 + MLT2A2 LTR ERVL 1 412 -41 205 178 0 0 chr12 22419358 22419403 -121367052 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 272 115 77 0 chr12 22419406 22419458 -121366997 + MLT2A2 LTR ERVL 465 520 0 2734 71 0 0 chr12 22419458 22419811 -121366644 + HERVL-A2 LTR ERVL 1 353 -5301 * 22678 78 21 6 chr12 22419805 22422785 -121363670 + HERVL-A2 LTR ERVL 2629 5654 0 3326 86 11 11 chr12 22422785 22423197 -121363258 + MLT2A2 LTR ERVL 1 415 -38 405 0 0 0 chr12 22423197 22423242 -121363213 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 3326 86 11 11 chr12 22423242 22423282 -121363173 + MLT2A2 LTR ERVL 414 453 0 4640 153 6 25 chr12 22423282 22424103 -121362352 + L1PB4 LINE L1 5322 6128 -28 2616 113 11 3 chr12 22424103 22424475 -121361980 + THE1C LTR MaLR 1 375 0 4640 153 6 25 chr12 22424475 22424500 -121361955 + L1PB4 LINE L1 6128 6152 -4 23 0 0 0 chr12 22424500 22424523 -121361932 + AT_rich Low_complexity Low_complexity 1 23 0 14225 193 28 22 chr12 22426223 22431852 -121354603 + L1M2 LINE L1 2 5660 -1188 451 131 36 48 chr12 22431856 22431940 -121354515 + MSTB LTR MaLR 1 83 -343 1308 271 8 0 chr12 22431940 22432305 -121354150 + L1MA4A LINE L1 22 389 -6474 2368 166 45 4 chr12 22432337 22432847 -121353608 + L1MA4A LINE L1 2846 3477 -3385 4408 215 6 1 chr12 22432849 22433790 -121352665 + L1MA4A LINE L1 4173 5118 -1744 6031 145 28 9 chr12 22433802 22435126 -121351329 + L1MA4A LINE L1 5674 7016 -3 362 106 0 15 chr12 22435825 22435891 -121350564 + (TC)n Simple_repeat Simple_repeat 2 66 0 191 167 24 0 chr12 22435890 22435932 -121350523 + (TA)n Simple_repeat Simple_repeat 1 43 0 * 620 285 106 10 chr12 22436633 22436840 -121349615 - MIR SINE MIR -3 259 33 1522 198 3 29 chr12 22436892 22437205 -121349250 - AluJo SINE Alu -7 305 1 414 309 161 38 chr12 22438181 22438634 -121347821 + L2 LINE L2 2804 3312 -1 21 0 0 0 chr12 22438668 22438689 -121347766 + AT_rich Low_complexity Low_complexity 1 21 0 287 292 195 0 chr12 22439068 22439181 -121347274 + MIR3 SINE MIR 42 176 -32 287 238 0 16 chr12 22439465 22439528 -121346927 - L2 LINE L2 -4 3309 3248 200 231 319 0 chr12 22439541 22439632 -121346823 + L2 LINE L2 3188 3307 -6 21 71 0 0 chr12 22440924 22440966 -121345489 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr12 22440985 22441006 -121345449 + AT_rich Low_complexity Low_complexity 1 21 0 548 213 90 0 chr12 22442692 22442814 -121343641 + FLAM_A SINE Alu 1 133 0 25 31 0 0 chr12 22442814 22442846 -121343609 + AT_rich Low_complexity Low_complexity 1 32 0 211 283 163 11 chr12 22443317 22443409 -121343046 + MIR SINE MIR 71 177 -31 357 24 0 0 chr12 22443903 22443945 -121342510 + (TA)n Simple_repeat Simple_repeat 1 42 0 692 279 154 36 chr12 22444786 22445291 -121341164 - L2 LINE L2 -4 3309 2726 197 439 75 47 chr12 22445641 22446001 -121340454 - L2 LINE L2 -89 3183 2814 21 57 0 0 chr12 22446050 22446085 -121340370 + AT_rich Low_complexity Low_complexity 1 35 0 182 379 0 0 chr12 22446261 22446319 -121340136 - L2 LINE L2 -601 2713 2656 377 294 149 49 chr12 22446630 22446980 -121339475 - L2 LINE L2 -678 2636 2252 349 211 166 51 chr12 22447095 22447270 -121339185 + Charlie8 DNA MER1_type 27 221 -2196 306 56 0 0 chr12 22447653 22447689 -121338766 + U2 snRNA snRNA 1 36 -152 28 48 0 0 chr12 22447874 22447916 -121338539 + AT_rich Low_complexity Low_complexity 1 42 0 2796 10 0 3 chr12 22448055 22448364 -121338091 + AluYb8 SINE Alu 1 308 -10 339 222 67 0 chr12 22448416 22448506 -121337949 + MIR SINE MIR 133 228 -34 2177 116 3 0 chr12 22448932 22449300 -121337155 + AluSp SINE Alu 1 369 0 438 309 110 56 chr12 22452654 22452830 -121333625 - L1M4 LINE L1 -1579 4567 4402 1662 164 0 48 chr12 22452830 22453141 -121333314 - AluJo SINE Alu -16 296 1 438 309 110 56 chr12 22453141 22453283 -121333172 - L1M4 LINE L1 -1744 4402 4269 2140 124 0 0 chr12 22453283 22453582 -121332873 - AluSg SINE Alu -11 299 1 438 309 110 56 chr12 22453582 22453708 -121332747 - L1M4 LINE L1 -1877 4269 4098 645 196 0 33 chr12 22453918 22454102 -121332353 + CT-rich Low_complexity Low_complexity 2 179 0 309 305 94 8 chr12 22454105 22454233 -121332222 + L2 LINE L2 3134 3272 0 2179 107 3 13 chr12 22454384 22454692 -121331763 - AluSq SINE Alu -8 305 1 931 269 29 0 chr12 22454959 22455197 -121331258 - MIR SINE MIR -8 254 10 747 298 160 20 chr12 22455223 22455690 -121330765 + L2 LINE L2 2511 3060 -212 2431 38 21 0 chr12 22456381 22456668 -121329787 + AluY SINE Alu 1 293 -18 218 299 63 116 chr12 22456951 22457235 -121329220 + L2 LINE L2 2990 3258 -14 1882 136 39 0 chr12 22457692 22457978 -121328477 - AluJb SINE Alu -15 297 1 38613 81 7 14 chr12 22458018 22459269 -121327186 - L1PA6 LINE L1 -5 6149 4892 2883 3 0 0 chr12 22459269 22459578 -121326877 - AluYa5 SINE Alu -2 309 1 38613 81 7 14 chr12 22459578 22464486 -121321969 - L1PA6 LINE L1 -1262 4892 11 194 250 21 21 chr12 22464626 22464674 -121321781 - L2 LINE L2 -10 3262 3215 21 0 0 0 chr12 22464728 22464749 -121321706 + AT_rich Low_complexity Low_complexity 1 21 0 1155 290 79 16 chr12 22466196 22466765 -121319690 - L1MC4a LINE L1 -1908 5900 5296 1982 140 3 13 chr12 22466792 22467092 -121319363 + AluSx SINE Alu 1 297 -15 1625 172 18 4 chr12 22467096 22467369 -121319086 + AluJo SINE Alu 1 277 -35 21 57 0 0 chr12 22467375 22467410 -121319045 + AT_rich Low_complexity Low_complexity 1 35 0 2370 165 7 39 chr12 22468092 22468529 -121317926 - MSTB LTR MaLR 0 426 4 206 379 74 0 chr12 22468551 22468646 -121317809 + L2 LINE L2 3164 3265 -7 189 245 38 38 chr12 22468977 22469030 -121317425 + MIR SINE MIR 21 73 -135 411 21 0 0 chr12 22469041 22469089 -121317366 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 685 318 107 39 chr12 22469099 22469583 -121316872 + MLT1K LTR MaLR 26 542 -46 581 184 118 66 chr12 22470018 22470230 -121316225 - MLT1J LTR MaLR 0 511 289 1961 110 18 0 chr12 22470743 22471015 -121315440 - AluSc SINE Alu -31 278 2 653 237 163 37 chr12 22471016 22471142 -121315313 + MIR SINE MIR 20 129 -133 805 192 61 42 chr12 22471142 22471356 -121315099 + MER20 DNA MER1_type 1 218 -1 653 237 163 37 chr12 22471356 22471444 -121315011 + MIR SINE MIR 129 261 -1 594 265 61 43 chr12 22471438 22471668 -121314787 - MIR SINE MIR -27 235 2 * 636 225 0 0 chr12 22472548 22472677 -121313778 + FRAM SINE Alu 39 167 -9 26 64 0 0 chr12 22473389 22473436 -121313019 + AT_rich Low_complexity Low_complexity 1 47 0 339 251 316 18 chr12 22474020 22474191 -121312264 + MIR SINE MIR 34 255 -7 319 368 44 28 chr12 22474458 22474640 -121311815 + MIR3 SINE MIR 1 185 -23 371 329 33 13 chr12 22476117 22476269 -121310186 + MIR3 SINE MIR 23 177 -31 423 235 178 56 chr12 22476345 22476558 -121309897 - MIR SINE MIR -8 254 16 48 67 0 0 chr12 22476851 22476941 -121309514 + AT_rich Low_complexity Low_complexity 1 90 0 37 62 0 0 chr12 22477043 22477108 -121309347 + AT_rich Low_complexity Low_complexity 1 65 0 21 71 0 0 chr12 22477248 22477290 -121309165 + AT_rich Low_complexity Low_complexity 1 42 0 4101 225 82 20 chr12 22477400 22478656 -121307799 + L1MC4 LINE L1 6708 8041 -1 198 311 0 16 chr12 22479225 22479286 -121307169 + MIR3 SINE MIR 148 207 -1 231 61 0 0 chr12 22481202 22481235 -121305220 + (A)n Simple_repeat Simple_repeat 1 33 0 386 297 21 48 chr12 22481541 22481686 -121304769 + MIR SINE MIR 122 262 0 6263 113 12 33 chr12 22481719 22482709 -121303746 + LTR5 LTR ERVK 1 969 0 1888 100 0 57 chr12 22484467 22484747 -121301708 - AluSx SINE Alu -21 291 28 236 258 15 0 chr12 22484819 22484885 -121301570 + MIR3 SINE MIR 138 204 -4 888 211 84 40 chr12 22485036 22485263 -121301192 + MER8 DNA MER2_type 1 237 -2 2083 136 0 0 chr12 22486587 22486882 -121299573 + AluSx SINE Alu 1 295 -17 414 0 0 0 chr12 22486883 22486929 -121299526 + (CA)n Simple_repeat Simple_repeat 2 47 0 549 324 83 6 chr12 22487589 22487901 -121298554 - L2 LINE L2 -87 3226 2891 265 290 112 37 chr12 22488076 22488183 -121298272 - L2 LINE L2 -557 2757 2643 210 171 0 0 chr12 22488340 22488375 -121298080 + MIR SINE MIR 61 95 -167 290 328 94 0 chr12 22489073 22489203 -121297252 + MIR SINE MIR 37 176 -74 372 216 69 10 chr12 22490002 22490104 -121296351 + L1MC4 LINE L1 7745 7852 -190 801 108 39 46 chr12 22490140 22490270 -121296185 + MER1B DNA MER1_type 211 339 0 262 125 25 0 chr12 22490287 22490327 -121296128 + L1MC4 LINE L1 7851 7891 -151 259 289 0 10 chr12 22490332 22490436 -121296019 + (TA)n Simple_repeat Simple_repeat 1 103 0 355 282 14 28 chr12 22490437 22490579 -121295876 + L1MC4 LINE L1 7902 8041 -1 * 1777 254 69 26 chr12 22490574 22491223 -121295232 + L1MC4 LINE L1 7225 7901 -141 2169 123 7 0 chr12 22491618 22491920 -121294535 + AluSc SINE Alu 1 304 -5 2594 36 0 3 chr12 22494935 22495242 -121291213 - AluY SINE Alu -5 306 1 394 231 169 39 chr12 22496760 22496890 -121289565 - L2 LINE L2 -5 3308 3162 4370 137 32 33 chr12 22498123 22499506 -121286949 + pTR5 LTR ERV1 741 2438 0 2076 102 0 46 chr12 22500060 22500185 -121286270 + AluY SINE Alu 21 150 -161 2234 116 0 0 chr12 22500185 22500488 -121285967 + AluSg SINE Alu 1 303 -7 2076 102 0 46 chr12 22500488 22500666 -121285789 + AluY SINE Alu 150 310 -1 652 196 14 14 chr12 22501057 22501195 -121285260 - MIR SINE MIR -55 207 70 285 29 0 0 chr12 22501196 22501230 -121285225 + (TC)n Simple_repeat Simple_repeat 2 35 0 2068 117 0 44 chr12 22501239 22501555 -121284900 - AluSx SINE Alu -10 302 1 259 309 87 25 chr12 22501586 22501789 -121284666 - L1ME LINE L1 -336 5826 5609 2269 70 9 70 chr12 22502272 22502600 -121283855 + AluSg SINE Alu 1 308 -2 2958 123 9 5 chr12 22502727 22503159 -121283296 - MER57B LTR ERV1 0 434 1 690 266 23 5 chr12 22503186 22503400 -121283055 - L1MD3 LINE L1 -1 7994 7777 21 36 0 0 chr12 22503480 22503508 -121282947 + AT_rich Low_complexity Low_complexity 1 28 0 777 186 0 8 chr12 22504056 22504185 -121282270 - FLAM_C SINE Alu -5 128 1 201 244 44 0 chr12 22504255 22504300 -121282155 - L2 LINE L2 -16 3297 3251 753 292 17 38 chr12 22504921 22505161 -121281294 - MIR SINE MIR -26 236 2 882 122 0 81 chr12 22505307 22505479 -121280976 - MER50 LTR ERV1 -80 654 497 4437 152 71 53 chr12 22505524 22505709 -121280746 + Ricksha_b DNA DNA 1 181 -2673 2272 99 0 3 chr12 22505709 22506001 -121280454 + AluSg SINE Alu 1 291 -19 4437 152 71 53 chr12 22506001 22506802 -121279653 + Ricksha_b DNA DNA 181 1067 -187 875 152 89 11 chr12 22506860 22507051 -121279404 + Ricksha_b DNA DNA 1441 1646 -8 1211 253 156 12 chr12 22508048 22508554 -121277901 - L1M4 LINE L1 -1974 4172 3594 252 286 32 16 chr12 22508562 22508688 -121277767 - L1MEc LINE L1 -5627 769 642 440 327 66 7 chr12 22508855 22509127 -121277328 - L1MEc LINE L1 -6017 379 92 370 316 8 8 chr12 22509391 22509508 -121276947 - MER5A DNA MER1_type -72 117 1 213 362 64 0 chr12 22509675 22509769 -121276686 + MIR SINE MIR 38 137 -125 4340 104 172 127 chr12 22510014 22510884 -121275571 - pTR5 LTR ERV1 0 2438 1609 315 0 0 0 chr12 22510884 22510919 -121275536 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 4340 104 172 127 chr12 22510919 22511397 -121275058 - pTR5 LTR ERV1 -829 1609 741 3876 166 104 18 chr12 22511519 22512256 -121274199 + MER21B LTR ERV1 1 801 -62 333 176 48 168 chr12 22512256 22512381 -121274074 + MER21B LTR ERV1 754 863 0 204 125 0 0 chr12 22512469 22512501 -121273954 + (TCC)n Simple_repeat Simple_repeat 3 34 0 206 368 11 11 chr12 22513157 22513252 -121273203 + L2 LINE L2 2253 2347 -967 328 252 159 0 chr12 22513800 22513907 -121272548 - L2 LINE L2 -2 3270 3147 3298 107 29 78 chr12 22513913 22514539 -121271916 + LTR1 LTR ERV1 1 595 -190 445 151 0 14 chr12 22514532 22514605 -121271850 + LTR1 LTR ERV1 714 785 0 * 372 152 0 0 chr12 22515149 22515215 -121271240 + CT-rich Low_complexity Low_complexity 1 66 0 2540 30 3 13 chr12 22516950 22517251 -121269204 + AluY SINE Alu 1 298 -13 319 330 11 0 chr12 22517609 22517703 -121268752 + MIR SINE MIR 52 146 -116 2043 138 3 16 chr12 22518246 22518550 -121267905 + AluSx SINE Alu 1 300 -12 1068 136 34 23 chr12 22518550 22518726 -121267729 + AluSg/x SINE Alu 134 311 -1 228 303 0 34 chr12 22519785 22519874 -121266581 + L2 LINE L2 3226 3311 -2 2153 116 27 3 chr12 22520412 22520713 -121265742 - AluSg SINE Alu -2 308 1 190 234 0 47 chr12 22520939 22521003 -121265452 - MER5A DNA MER1_type -114 75 15 439 265 61 8 chr12 22521273 22521405 -121265050 - L2 LINE L2 -397 2917 2779 2805 220 88 85 chr12 22521420 22521614 -121264841 - L1MC5 LINE L1 -36 7925 7733 1890 133 10 30 chr12 22521614 22521915 -121264540 - AluSx SINE Alu -17 295 1 2805 220 88 85 chr12 22521915 22523362 -121263093 - L1MC5 LINE L1 -228 7733 6293 2455 84 0 0 chr12 22523425 22523724 -121262731 + AluSc SINE Alu 1 299 -10 608 250 58 22 chr12 22523795 22524019 -121262436 - L1MC5 LINE L1 -1889 5919 5688 2304 277 69 35 chr12 22524029 22524870 -121261585 + L1PA15 LINE L1 2 871 -5916 6115 221 39 19 chr12 22524922 22525659 -121260796 + L1PA15 LINE L1 1264 1985 -4831 2087 87 11 14 chr12 22525659 22525946 -121260509 - AluY SINE Alu -13 298 13 6115 221 39 19 chr12 22525946 22527762 -121258693 + L1PA15 LINE L1 1985 3764 -3052 1789 188 3 0 chr12 22527762 22528071 -121258384 + AluJb SINE Alu 1 310 -2 6115 221 39 19 chr12 22528071 22528929 -121257526 + L1PA15 LINE L1 3764 4604 -2212 6115 198 42 5 chr12 22528929 22530941 -121255514 + L1PA15 LINE L1 4787 6816 0 6115 221 39 19 chr12 22530941 22530959 -121255496 + L1PA15 LINE L1 4604 6816 0 4107 136 35 55 chr12 22531092 22531863 -121254592 - LTR1 LTR ERV1 0 785 30 3234 176 15 31 chr12 22532047 22532662 -121253793 + MER6A DNA MER2_type 1 605 0 315 189 0 74 chr12 22533356 22533451 -121253004 - MIR SINE MIR 0 262 175 450 321 58 33 chr12 22533724 22533961 -121252494 + MIR SINE MIR 1 238 -24 1347 205 62 39 chr12 22536993 22537329 -121249126 + MER2 DNA MER2_type 1 344 0 215 250 0 17 chr12 22537730 22537790 -121248665 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 386 335 112 29 chr12 22538101 22538477 -121247978 - HAL1b LINE L1 -569 779 373 370 137 41 41 chr12 22538526 22538599 -121247856 + MLT1E1 LTR MaLR 1 73 -581 767 190 0 29 chr12 22538599 22538736 -121247719 + MLT1A2 LTR MaLR 1 133 -241 1897 82 4 8 chr12 22538736 22538979 -121247476 - AluSp SINE Alu -65 248 7 1283 237 107 7 chr12 22539026 22539326 -121247129 + MLT1E3 LTR MaLR 295 624 0 2604 248 29 35 chr12 22539328 22540130 -121246325 - L1ME1 LINE L1 -52 6114 5318 5325 138 21 28 chr12 22540139 22540984 -121245471 - L1PB3 LINE L1 -5 6149 5301 2301 83 0 0 chr12 22540984 22541273 -121245182 + AluY SINE Alu 1 289 -22 5325 138 21 28 chr12 22541273 22541655 -121244800 - L1PB3 LINE L1 -853 5301 4918 231 187 0 27 chr12 22541647 22541722 -121244733 - L1ME1 LINE L1 -816 5330 5258 * 622 121 0 0 chr12 22541734 22541825 -121244630 - AluSg/x SINE Alu -9 303 213 934 199 45 5 chr12 22541869 22542090 -121244365 - L1ME1 LINE L1 -968 5178 4949 2259 138 30 20 chr12 22542090 22542496 -121243959 - L1MA4A LINE L1 -6 6297 5888 1685 110 47 0 chr12 22542497 22542751 -121243704 + MSTB1 LTR MaLR 167 432 0 1995 246 71 2 chr12 22542752 22543288 -121243167 - L1ME1 LINE L1 -148 6018 5446 513 242 105 68 chr12 22543388 22543505 -121242950 - L1ME3A LINE L1 -17 6153 6042 2427 60 0 3 chr12 22543505 22543803 -121242652 - AluY SINE Alu -14 297 1 513 242 105 68 chr12 22543803 22543933 -121242522 - L1ME3A LINE L1 -128 6042 5897 2449 73 3 3 chr12 22544989 22545292 -121241163 - AluSp SINE Alu -7 306 4 609 244 139 42 chr12 22545569 22545807 -121240648 + MIR SINE MIR 2 262 0 285 414 53 6 chr12 22545892 22546061 -121240394 - MIR3 SINE MIR -11 197 21 217 367 0 0 chr12 22546820 22546899 -121239556 - L2 LINE L2 -8 3264 3186 * 278 337 11 0 chr12 22546886 22546978 -121239477 - MIR SINE MIR -158 104 12 281 244 26 13 chr12 22547396 22547474 -121238981 + MIR SINE MIR 63 141 -121 199 288 45 54 chr12 22547811 22547922 -121238533 - MIR SINE MIR -62 146 37 22 35 0 0 chr12 22548995 22549024 -121237431 + AT_rich Low_complexity Low_complexity 1 29 0 362 211 21 21 chr12 22549264 22549359 -121237096 - L1ME3A LINE L1 -339 5782 5688 207 0 0 0 chr12 22549830 22549853 -121236602 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 686 139 9 0 chr12 22549853 22549968 -121236487 - LTR9B LTR ERV1 -84 560 445 254 292 56 49 chr12 22550164 22550308 -121236147 - L1ME3A LINE L1 -1304 4842 4698 1510 174 107 58 chr12 22552125 22552557 -121233898 + MSTB2 LTR MaLR 5 457 0 593 261 21 0 chr12 22553013 22553155 -121233300 + MER58A DNA MER1_type 11 155 0 3053 288 123 8 chr12 22553200 22554370 -121232085 - L2 LINE L2 -1497 1817 513 585 227 34 23 chr12 22554404 22554580 -121231875 + MER5B DNA MER1_type 1 178 0 241 265 60 12 chr12 22554824 22554907 -121231548 + MIR SINE MIR 74 160 -102 35 71 0 0 chr12 22555021 22555091 -121231364 + AT_rich Low_complexity Low_complexity 1 70 0 186 262 16 33 chr12 22557210 22557271 -121229184 - MER5B DNA MER1_type 0 178 119 2036 142 3 0 chr12 22557424 22557720 -121228735 + AluSx SINE Alu 1 297 -15 974 306 51 21 chr12 22558069 22558458 -121227997 - LTR33 LTR ERVL -6 515 115 258 344 31 23 chr12 22558571 22558699 -121227756 - L2 LINE L2 -5 3308 3180 465 210 341 0 chr12 22559251 22559389 -121227066 - MER5A DNA MER1_type -1 188 4 1341 169 20 66 chr12 22560218 22560392 -121226063 + Tigger1 DNA MER2_type 2 158 -2260 2391 78 10 0 chr12 22560392 22560698 -121225757 - AluSg SINE Alu -1 309 1 1341 169 20 66 chr12 22560698 22560825 -121225630 + Tigger1 DNA MER2_type 158 289 -2129 * 7851 127 42 16 chr12 22560814 22560916 -121225539 + Tigger1 DNA MER2_type 1070 1168 -1250 2315 101 0 3 chr12 22560916 22561224 -121225231 + AluSx SINE Alu 1 307 -5 7851 127 42 16 chr12 22561224 22562022 -121224433 + Tigger1 DNA MER2_type 1168 2017 -401 584 216 17 0 chr12 22562022 22562138 -121224317 + FLAM_C SINE Alu 1 118 -15 7851 127 42 16 chr12 22562138 22562550 -121223905 + Tigger1 DNA MER2_type 2017 2417 -1 240 299 56 70 chr12 22562631 22562845 -121223610 - MLT1J LTR MaLR -191 320 110 483 335 49 5 chr12 22563109 22563294 -121223161 + MIR SINE MIR 57 249 -13 217 196 59 20 chr12 22564295 22564346 -121222109 - L2 LINE L2 -5 3308 3256 * 603 278 46 107 chr12 22564327 22564759 -121221696 + L2 LINE L2 2908 3313 0 192 264 222 0 chr12 22565391 22565463 -121220992 - MIR SINE MIR -73 189 102 23 33 0 0 chr12 22568739 22568769 -121217686 + AT_rich Low_complexity Low_complexity 1 30 0 420 229 81 93 chr12 22568965 22569288 -121217167 - L1MEd LINE L1 -4886 1233 915 532 168 40 16 chr12 22569477 22569601 -121216854 + MLT1A1 LTR MaLR 4 131 -234 285 345 17 8 chr12 22569611 22569730 -121216725 - L1MEd LINE L1 -5448 671 552 6941 162 25 6 chr12 22569747 22570973 -121215482 - L1PA13 LINE L1 -1364 4782 3533 6325 89 10 4 chr12 22570977 22572353 -121214102 + L1PA13 LINE L1 4777 6161 -2 2097 87 0 62 chr12 22572917 22573240 -121213215 + AluY SINE Alu 1 303 -8 1100 243 61 89 chr12 22573294 22573612 -121212843 - LTR16A1 LTR ERVL 0 457 132 957 147 0 0 chr12 22573612 22573782 -121212673 + (TCCC)n Simple_repeat Simple_repeat 3 172 0 1459 92 5 0 chr12 22573783 22573979 -121212476 - AluSg/x SINE Alu -33 277 81 1100 243 61 89 chr12 22573979 22574119 -121212336 - LTR16A1 LTR ERVL -324 133 10 11318 211 34 25 chr12 22574926 22578956 -121207499 - L1MB2 LINE L1 -1 5994 1898 1331 152 31 9 chr12 22578956 22579180 -121207275 - MER30 DNA MER1_type 0 230 2 11318 211 34 25 chr12 22579180 22579498 -121206957 - L1MB2 LINE L1 -4097 1898 1584 2955 236 26 48 chr12 22579514 22580593 -121205862 - L1MB2 LINE L1 -4528 1444 390 392 153 59 0 chr12 22580616 22580701 -121205754 + L1M4 LINE L1 1290 1379 -5163 281 270 71 63 chr12 22580715 22580841 -121205614 - L1M3d LINE L1 -5089 802 676 231 239 57 68 chr12 22580909 22580997 -121205458 - L1MB2 LINE L1 -5489 402 316 302 237 26 13 chr12 22581050 22581126 -121205329 - L1MB2 LINE L1 -5814 77 1 207 286 0 0 chr12 22582548 22582604 -121203851 + T-rich Low_complexity Low_complexity 1 56 0 3607 146 0 16 chr12 22582783 22583393 -121203062 - L1PA6 LINE L1 -4498 1648 1049 * 24441 66 8 2 chr12 22583392 22587807 -121198648 + L1PA6 LINE L1 1630 6154 0 21 0 0 0 chr12 22588819 22588840 -121197615 + AT_rich Low_complexity Low_complexity 1 21 0 1623 230 64 60 chr12 22590359 22590859 -121195596 + MLT1E LTR MaLR 92 593 0 191 329 158 36 chr12 22591731 22592035 -121194420 - L2 LINE L2 -407 2907 2567 289 313 116 0 chr12 22593354 22593466 -121192989 - L2 LINE L2 0 3313 3189 371 171 27 36 chr12 22593707 22593818 -121192637 + L1MC5 LINE L1 7802 7911 -50 287 212 141 12 chr12 22595431 22595516 -121190939 - MIR SINE MIR -1 261 166 231 127 56 28 chr12 22595516 22595587 -121190868 + (TATAA)n Simple_repeat Simple_repeat 5 77 0 388 270 138 33 chr12 22595588 22595740 -121190715 - MIR SINE MIR -94 168 1 220 246 0 43 chr12 22595789 22595858 -121190597 + L2 LINE L2 3174 3239 -33 991 273 75 13 chr12 22595887 22596463 -121189992 - L1ME LINE L1 -365 5805 5192 260 289 60 30 chr12 22596820 22596986 -121189469 - MLT1J LTR MaLR -332 179 9 915 276 19 0 chr12 22599116 22599330 -121187125 - MIR SINE MIR -42 220 3 578 257 155 41 chr12 22599330 22599578 -121186877 - L2 LINE L2 -272 3041 2733 2320 105 0 6 chr12 22599578 22599892 -121186563 + AluSx SINE Alu 1 312 0 578 257 155 41 chr12 22599892 22600007 -121186448 - L2 LINE L2 -580 2733 2633 874 268 101 10 chr12 22600778 22601084 -121185371 - L2 LINE L2 -724 2590 2257 1765 177 6 15 chr12 22604095 22604429 -121182026 + MER1B DNA MER1_type 8 338 -1 14034 140 15 8 chr12 22604514 22604766 -121181689 + Tigger1 DNA MER2_type 1 250 -2168 2020 146 30 30 chr12 22604766 22605102 -121181353 - MER1B DNA MER1_type 0 337 2 14034 140 15 8 chr12 22605102 22607249 -121179206 + Tigger1 DNA MER2_type 250 2418 0 212 313 61 54 chr12 22607332 22607479 -121178976 - MER5B DNA MER1_type -28 150 3 180 0 0 0 chr12 22611108 22611128 -121175327 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr12 22611603 22611626 -121174829 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 22611910 22611931 -121174524 + AT_rich Low_complexity Low_complexity 1 21 0 288 286 87 16 chr12 22613308 22613434 -121173021 + L2 LINE L2 3138 3272 0 191 324 27 0 chr12 22613520 22613594 -121172861 - L2 LINE L2 -545 2769 2694 285 277 92 25 chr12 22614295 22614414 -121172041 + L2 LINE L2 3182 3308 -5 1538 79 75 0 chr12 22614627 22614841 -121171614 - MER30 DNA MER1_type 0 230 1 207 286 14 14 chr12 22614975 22615045 -121171410 + L2 LINE L2 3242 3311 -2 731 330 141 0 chr12 22616176 22616546 -121169909 - L2 LINE L2 -75 3238 2817 271 381 90 13 chr12 22616629 22616784 -121169671 - MIR SINE MIR -76 186 20 330 287 46 0 chr12 22617021 22617108 -121169347 + MIR SINE MIR 161 251 -11 618 294 64 9 chr12 22618179 22618397 -121168058 + MIR SINE MIR 1 230 -32 1902 96 81 15 chr12 22618421 22618714 -121167741 - AluSg SINE Alu 0 310 1 23 0 0 0 chr12 22618721 22618744 -121167711 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 22618781 22618803 -121167652 + AT_rich Low_complexity Low_complexity 1 22 0 515 317 52 15 chr12 22618920 22619396 -121167059 - L1M4 LINE L1 -2145 4001 3508 * 6249 42 2 4 chr12 22619391 22620199 -121166256 - L1PA7 LINE L1 -1 6153 5347 270 286 112 13 chr12 22620226 22620450 -121166005 - L1MEd LINE L1 -4970 1149 904 1730 236 95 45 chr12 22620470 22621157 -121165298 - L1ME3 LINE L1 -71 6091 5371 306 215 83 35 chr12 22621157 22621301 -121165154 - L1MEd LINE L1 -5287 832 682 327 319 115 0 chr12 22621676 22621789 -121164666 - MIR SINE MIR -64 144 19 3196 91 9 0 chr12 22621843 22622285 -121164170 - MLT2A2 LTR ERVL 0 453 8 442 284 232 0 chr12 22622350 22622561 -121163894 + MIR SINE MIR 3 262 0 294 326 196 7 chr12 22624041 22624179 -121162276 + MIR SINE MIR 10 173 -89 2299 107 0 25 chr12 22624487 22624804 -121161651 + AluSx SINE Alu 1 309 -3 1314 210 49 43 chr12 22625496 22625801 -121160654 - AluJo SINE Alu -5 307 1 235 196 186 0 chr12 22626212 22626309 -121160146 + MLT1H LTR MaLR 1 115 -434 30253 105 12 57 chr12 22626346 22632787 -121153668 - L1PA7 LINE L1 -1 6153 12 31 26 0 0 chr12 22633940 22633978 -121152477 + AT_rich Low_complexity Low_complexity 1 38 0 219 333 0 18 chr12 22634376 22634433 -121152022 - L2 LINE L2 -31 3241 3186 24 0 0 0 chr12 22634668 22634692 -121151763 + AT_rich Low_complexity Low_complexity 1 24 0 2679 12 0 0 chr12 22635021 22635447 -121151008 - L1PA2 LINE L1 -580 5575 5150 5322 12 0 0 chr12 22635447 22636062 -121150393 + L1PA2 LINE L1 5555 6177 0 329 350 115 0 chr12 22638554 22638771 -121147684 - MIR SINE MIR -1 261 20 733 308 45 12 chr12 22638839 22639086 -121147369 + MIR SINE MIR 8 262 0 1291 185 50 0 chr12 22639150 22639452 -121147003 - MER33 DNA MER1_type 0 324 8 394 270 32 63 chr12 22640087 22640213 -121146242 + MIR SINE MIR 26 147 -61 1042 149 17 85 chr12 22640347 22640582 -121145873 + MER20 DNA MER1_type 1 219 0 186 219 0 24 chr12 22640962 22641003 -121145452 + CT-rich Low_complexity Low_complexity 2 41 0 1800 137 0 11 chr12 22641264 22641527 -121144928 + AluSx SINE Alu 5 264 -48 23 54 0 0 chr12 22642696 22642733 -121143722 + AT_rich Low_complexity Low_complexity 1 37 0 2281 90 10 0 chr12 22642738 22643038 -121143417 + AluSp SINE Alu 1 303 -10 21 0 0 0 chr12 22647106 22647127 -121139328 + AT_rich Low_complexity Low_complexity 1 21 0 293 157 0 39 chr12 22647160 22647211 -121139244 - MIR SINE MIR -84 124 76 220 333 75 50 chr12 22647271 22647391 -121139064 + L2 LINE L2 3150 3272 0 1017 170 23 0 chr12 22647986 22648157 -121138298 + FAM SINE Alu 1 175 0 463 254 127 15 chr12 22649371 22649505 -121136950 + L2 LINE L2 3165 3313 0 2797 94 5 0 chr12 22649734 22650107 -121136348 - THE1C LTR MaLR 0 375 1 1901 131 55 33 chr12 22650360 22650727 -121135728 + THE1C LTR MaLR 1 375 0 671 289 21 11 chr12 22650733 22650923 -121135532 + MIR SINE MIR 23 214 -48 4640 52 0 0 chr12 22651648 22652220 -121134235 + L1PA7 LINE L1 5579 6150 -4 384 301 71 36 chr12 22652354 22652550 -121133905 + L2 LINE L2 3076 3278 -35 190 263 70 0 chr12 22653172 22653229 -121133226 + MIR SINE MIR 160 220 -42 2028 152 0 0 chr12 22654263 22654572 -121131883 + AluJb SINE Alu 1 309 -3 1993 152 0 3 chr12 22655346 22655656 -121130799 + AluJb SINE Alu 1 309 -3 205 200 0 0 chr12 22656401 22656441 -121130014 + (TA)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr12 22656483 22656504 -121129951 + (T)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr12 22657743 22657772 -121128683 + AT_rich Low_complexity Low_complexity 1 29 0 1738 114 4 4 chr12 22658306 22658560 -121127895 - L1PA8A LINE L1 0 6131 5878 317 146 0 18 chr12 22658875 22658930 -121127525 - L1MC4 LINE L1 -1374 6668 6615 324 0 0 0 chr12 22658950 22658986 -121127469 + (TG)n Simple_repeat Simple_repeat 1 36 0 237 128 0 0 chr12 22659267 22659306 -121127149 - MADE1 DNA Mariner -40 40 2 363 325 64 6 chr12 22659915 22660072 -121126383 + MIR SINE MIR 31 196 -66 316 295 54 9 chr12 22660808 22660920 -121125535 + L2 LINE L2 2694 2810 -504 850 321 97 38 chr12 22660999 22661473 -121124982 + L2 LINE L2 2810 3311 -2 25 51 0 0 chr12 22661830 22661869 -121124586 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr12 22662614 22662641 -121123814 + AT_rich Low_complexity Low_complexity 1 27 0 2201 99 27 0 chr12 22662941 22663233 -121123222 + AluY SINE Alu 1 300 -11 5645 94 0 44 chr12 22664568 22665452 -121121003 - L1P LINE L1 -2148 3998 3154 6232 57 1 0 chr12 22665452 22666227 -121120228 + L1PA7 LINE L1 5378 6153 -1 408 20 0 0 chr12 22667951 22668000 -121118455 + (CA)n Simple_repeat Simple_repeat 2 50 0 259 216 190 26 chr12 22668747 22668863 -121117592 - MIR SINE MIR -11 251 117 2650 48 0 0 chr12 22669615 22669924 -121116531 - AluY SINE Alu -2 309 1 386 20 20 0 chr12 22671398 22671449 -121115006 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 1920 104 8 0 chr12 22671479 22671730 -121114725 - AluSx SINE Alu -14 298 46 347 293 81 16 chr12 22671774 22671897 -121114558 - L2 LINE L2 0 3272 3142 5205 114 8 3 chr12 22672944 22673705 -121112750 + L1PB1 LINE L1 5387 6151 0 475 353 87 36 chr12 22673975 22674697 -121111758 + L2 LINE L2 1316 2074 -1240 369 0 0 0 chr12 22675210 22675251 -121111204 + (CA)n Simple_repeat Simple_repeat 2 42 0 331 352 51 76 chr12 22675664 22675979 -121110476 - L2 LINE L2 -1 3271 2965 866 347 77 36 chr12 22676120 22676837 -121109618 + L2 LINE L2 2149 2894 -420 377 290 46 50 chr12 22677115 22677353 -121109102 - L2 LINE L2 -4 3309 3073 257 294 87 11 chr12 22677395 22677487 -121108968 + L2 LINE L2 3174 3272 0 24 53 0 0 chr12 22678072 22678110 -121108345 + AT_rich Low_complexity Low_complexity 1 38 0 365 327 80 6 chr12 22678114 22678276 -121108179 - MIR SINE MIR -14 248 75 186 337 11 63 chr12 22678862 22678957 -121107498 - L2 LINE L2 -183 3089 3000 1855 150 27 0 chr12 22679175 22679468 -121106987 + AluSx SINE Alu 1 301 -11 223 409 0 27 chr12 22679702 22679851 -121106604 - L2 LINE L2 -838 2476 2332 189 347 78 72 chr12 22681411 22681578 -121104877 + L2 LINE L2 3096 3263 -9 2536 74 0 0 chr12 22681769 22682078 -121104377 - AluSg SINE Alu -1 309 1 966 157 13 1 chr12 22682373 22682537 -121103918 + MER2 DNA MER2_type 1 173 -163 230 316 45 19 chr12 22683097 22683252 -121103203 - L1MC4a LINE L1 -1854 5954 5796 479 297 168 47 chr12 22683282 22683835 -121102620 - L1MC4a LINE L1 -776 5370 4751 249 248 9 19 chr12 22684051 22684156 -121102299 - L1MC4a LINE L1 -1877 4269 4166 21 36 0 0 chr12 22684623 22684651 -121101804 + AT_rich Low_complexity Low_complexity 1 28 0 190 263 158 0 chr12 22685852 22685928 -121100527 - MIR SINE MIR -10 252 165 182 79 0 53 chr12 22690018 22690056 -121096399 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 876 185 105 20 chr12 22690483 22690683 -121095772 - MER20 DNA MER1_type 0 219 3 21 0 0 0 chr12 22691506 22691527 -121094928 + AT_rich Low_complexity Low_complexity 1 21 0 488 270 7 47 chr12 22691797 22691945 -121094510 + MIR SINE MIR 47 188 -74 180 318 12 59 chr12 22692110 22692195 -121094260 - MIR SINE MIR -74 188 108 891 101 29 0 chr12 22693062 22693201 -121093254 + L1PA15 LINE L1 6023 6165 0 2056 101 13 51 chr12 22693454 22693770 -121092685 + AluSx SINE Alu 1 304 -8 333 270 81 9 chr12 22693778 22693889 -121092566 + MIR SINE MIR 144 262 0 22 0 0 0 chr12 22695581 22695603 -121090852 + AT_rich Low_complexity Low_complexity 1 22 0 2080 119 0 7 chr12 22695629 22695943 -121090512 - AluSx SINE Alu 0 312 1 208 147 0 0 chr12 22696061 22696095 -121090360 + MIR SINE MIR 119 152 -110 561 338 76 14 chr12 22696294 22696426 -121090029 + MIR SINE MIR 8 159 -103 222 118 0 0 chr12 22696426 22696460 -121089995 + (TAA)n Simple_repeat Simple_repeat 1 34 0 561 338 76 14 chr12 22696460 22696537 -121089918 + MIR SINE MIR 159 230 -32 318 299 21 0 chr12 22697148 22697245 -121089210 + GA-rich Low_complexity Low_complexity 2 100 0 308 308 147 13 chr12 22697667 22697891 -121088564 + L3 LINE CR1 1147 1400 -177 1593 239 95 25 chr12 22697891 22698363 -121088092 + MLT1D LTR MaLR 1 505 0 1948 142 3 17 chr12 22698717 22699013 -121087442 + AluSx SINE Alu 6 297 -15 529 251 64 11 chr12 22700513 22700700 -121085755 - MIR SINE MIR 0 262 66 422 301 136 0 chr12 22700702 22700878 -121085577 + MIR SINE MIR 8 207 -55 199 191 43 21 chr12 22701562 22701609 -121084846 - MIR SINE MIR -3 259 212 1996 143 3 10 chr12 22701651 22701951 -121084504 - AluSx SINE Alu -14 298 1 207 219 0 0 chr12 22702631 22702672 -121083783 + (TA)n Simple_repeat Simple_repeat 1 41 0 25 0 0 0 chr12 22703775 22703800 -121082655 + AT_rich Low_complexity Low_complexity 1 25 0 218 287 225 8 chr12 22705161 22705290 -121081165 + MIR3 SINE MIR 49 205 -3 191 307 117 28 chr12 22705977 22706156 -121080299 - L2 LINE L2 -901 2413 2219 239 287 156 8 chr12 22706197 22706319 -121080136 - L2 LINE L2 -6 3307 3168 236 371 124 30 chr12 22706493 22706792 -121079663 - L2 LINE L2 -342 2972 2646 324 344 9 40 chr12 22706850 22707074 -121079381 + L2 LINE L2 3097 3313 0 210 167 0 0 chr12 22708237 22708273 -121078182 + A-rich Low_complexity Low_complexity 1 36 0 2337 97 0 0 chr12 22708777 22709077 -121077378 + AluY SINE Alu 1 300 -11 23 68 0 0 chr12 22709421 22709465 -121076990 + AT_rich Low_complexity Low_complexity 1 44 0 629 307 69 62 chr12 22709682 22710299 -121076156 + L2 LINE L2 2510 3308 -5 1806 166 0 10 chr12 22710674 22710969 -121075486 - AluJo SINE Alu -12 300 9 1153 139 38 5 chr12 22712068 22712277 -121074178 - MER20 DNA MER1_type -3 216 1 32 26 0 0 chr12 22713319 22713358 -121073097 + AT_rich Low_complexity Low_complexity 1 39 0 393 141 71 0 chr12 22713676 22713761 -121072694 - L1MA10 LINE L1 -1722 4424 4334 * 3900 163 53 15 chr12 22713760 22715222 -121071233 + L1MA10 LINE L1 4408 5940 -249 1805 184 5 35 chr12 22715275 22715672 -121070783 + L1MA10 LINE L1 5948 6332 -2 1594 64 0 0 chr12 22716221 22716408 -121070047 + AluY SINE Alu 1 187 -124 512 33 0 0 chr12 22716408 22716469 -121069986 + AluY SINE Alu 220 280 -31 216 0 0 0 chr12 22716473 22716497 -121069958 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 204 319 44 44 chr12 22717497 22717610 -121068845 - L2 LINE L2 -24 3248 3136 268 337 39 42 chr12 22718075 22718360 -121068095 - L2 LINE L2 -1903 1411 1128 184 407 105 23 chr12 22718900 22719244 -121067211 - L2 LINE L2 -2561 753 382 1447 142 82 15 chr12 22719767 22720035 -121066420 + L1MB5 LINE L1 5881 6166 -8 23 0 0 0 chr12 22720041 22720064 -121066391 + AT_rich Low_complexity Low_complexity 1 23 0 350 353 94 14 chr12 22720247 22720522 -121065933 + L1ME3A LINE L1 4664 4960 -1186 674 237 49 74 chr12 22720630 22720999 -121065456 + L1ME3A LINE L1 4958 5314 -832 1022 224 229 55 chr12 22721030 22721463 -121064992 + L1ME3A LINE L1 5387 5894 -276 244 280 42 50 chr12 22721267 22721506 -121064949 + L1MA3 LINE L1 5705 5941 -364 * 22 35 0 0 chr12 22721686 22721715 -121064740 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr12 22722126 22722153 -121064302 + (CA)n Simple_repeat Simple_repeat 2 28 0 298 245 0 0 chr12 22722153 22722206 -121064249 + MER5B DNA MER1_type 125 177 -1 294 321 94 17 chr12 22722241 22722405 -121064050 - MIR3 SINE MIR -59 149 14 2302 76 0 10 chr12 22723694 22723996 -121062459 + THE1B LTR MaLR 66 364 0 1630 195 3 7 chr12 22724494 22724791 -121061664 - AluJo SINE Alu -16 296 1 189 0 0 0 chr12 22726201 22726222 -121060233 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1636 292 117 34 chr12 22726526 22727559 -121058896 + L2 LINE L2 2172 3295 -18 487 234 27 0 chr12 22728499 22728610 -121057845 + MER81 DNA DNA 1 114 0 380 283 88 31 chr12 22728703 22728862 -121057593 - MIR SINE MIR -86 176 9 305 265 31 10 chr12 22728910 22729008 -121057447 + MER5A DNA MER1_type 4 103 -86 237 308 90 0 chr12 22729940 22730018 -121056437 + L2 LINE L2 3187 3271 -1 323 325 151 39 chr12 22730305 22730511 -121055944 + L2 LINE L2 3044 3272 0 197 386 14 59 chr12 22730749 22730969 -121055486 + L2 LINE L2 2828 3037 -235 3497 34 0 0 chr12 22730980 22731398 -121055057 + L1PA4 LINE L1 5735 6152 -3 347 237 100 46 chr12 22733789 22733933 -121052522 + L1ME LINE L1 5486 5638 -483 604 265 65 25 chr12 22733935 22734180 -121052275 + L1ME4a LINE L1 5566 5820 -301 23 54 0 0 chr12 22734247 22734284 -121052171 + AT_rich Low_complexity Low_complexity 1 37 0 259 204 183 22 chr12 22734290 22734427 -121052028 + L1ME4a LINE L1 5962 6120 -1 1067 164 0 6 chr12 22735032 22735197 -121051258 - AluJb SINE Alu -17 295 132 711 200 133 0 chr12 22735382 22735547 -121050908 + MER20 DNA MER1_type 33 219 0 187 314 57 29 chr12 22736429 22736499 -121049956 - MIR SINE MIR -95 113 42 816 0 0 0 chr12 22736523 22736617 -121049838 - L1PA2 LINE L1 -2 6153 6060 6133 70 49 0 chr12 22736865 22737813 -121048642 - L1PA10 LINE L1 -11 6157 5170 568 252 23 64 chr12 22737872 22738097 -121048358 - MIR SINE MIR -16 246 34 349 316 15 52 chr12 22738301 22738437 -121048018 + MIR SINE MIR 31 161 -101 741 198 64 6 chr12 22738438 22738595 -121047860 + FRAM SINE Alu 1 166 -10 276 313 18 9 chr12 22738595 22738707 -121047748 + MIR SINE MIR 150 262 0 1883 123 3 3 chr12 22739462 22739747 -121046708 - MER75 DNA T2_type 0 514 230 31514 56 11 1 chr12 22739753 22745842 -121040613 + L1PA5 LINE L1 12 6151 -3 1637 127 8 0 chr12 22745842 22746087 -121040368 - MER75 DNA T2_type -264 250 4 292 287 101 31 chr12 22746231 22746360 -121040095 - MIR3 SINE MIR -56 152 15 256 93 93 74 chr12 22746361 22746415 -121040040 + MER3 DNA MER1_type 153 207 -2 274 306 109 48 chr12 22746774 22746921 -121039534 + MIR3 SINE MIR 28 183 -25 218 280 118 21 chr12 22750132 22750180 -121036275 + MIR SINE MIR 50 92 -170 527 307 74 25 chr12 22750180 22750424 -121036031 - MIR SINE MIR -2 260 5 218 280 118 21 chr12 22750424 22750468 -121035987 + MIR SINE MIR 92 151 -111 220 314 0 0 chr12 22752492 22752543 -121033912 - L2 LINE L2 -243 3070 3020 22 0 0 0 chr12 22752721 22752743 -121033712 + AT_rich Low_complexity Low_complexity 1 22 0 222 370 0 11 chr12 22752963 22753055 -121033400 + MIR SINE MIR 162 252 -10 2411 90 0 0 chr12 22755319 22755619 -121030836 - AluSp SINE Alu -13 300 1 252 0 0 0 chr12 22755644 22755672 -121030783 + (TG)n Simple_repeat Simple_repeat 1 28 0 307 214 0 58 chr12 22755693 22755796 -121030659 - L1MC3 LINE L1 -1139 6646 6550 4640 83 35 16 chr12 22755911 22756606 -121029849 + L1PA13 LINE L1 5452 6159 -4 752 208 0 6 chr12 22757291 22757464 -121028991 + GA-rich Low_complexity Low_complexity 1 172 0 342 369 45 0 chr12 22757518 22757697 -121028758 + L1M4 LINE L1 2959 3145 -3001 23 0 0 0 chr12 22758195 22758218 -121028237 + AT_rich Low_complexity Low_complexity 1 23 0 3154 34 13 0 chr12 22758820 22759201 -121027254 - L1PA5 LINE L1 -6 6148 5763 1236 157 8 30 chr12 22759590 22759826 -121026629 + L1MC1 LINE L1 5651 5881 -452 613 205 0 0 chr12 22759843 22759955 -121026500 + L1MC1 LINE L1 6205 6316 -17 22 0 0 0 chr12 22760026 22760048 -121026407 + AT_rich Low_complexity Low_complexity 1 22 0 1522 160 4 15 chr12 22760054 22760316 -121026139 + THE1C LTR MaLR 1 259 -116 184 352 84 0 chr12 22761020 22761091 -121025364 - L2 LINE L2 -39 3233 3157 315 200 62 0 chr12 22761329 22761394 -121025061 + L2 LINE L2 3245 3313 0 281 358 58 0 chr12 22762477 22762597 -121023858 - LTR16A LTR ERVL -323 127 1 315 0 0 0 chr12 22764549 22764584 -121021871 + (CAA)n Simple_repeat Simple_repeat 2 36 0 183 337 79 10 chr12 22765571 22765672 -121020783 - L2 LINE L2 -796 2518 2411 250 297 237 0 chr12 22766006 22766124 -121020331 - L2 LINE L2 -2 3311 3166 234 319 61 80 chr12 22766392 22766705 -121019750 + L1ME2 LINE L1 310 616 -5503 419 222 105 63 chr12 22766912 22767151 -121019304 + LTR16C LTR ERVL 234 482 -9 301 326 11 11 chr12 22767329 22767513 -121018942 + L1ME2 LINE L1 1026 1209 -4910 415 266 64 14 chr12 22767588 22767806 -121018649 + L1ME2 LINE L1 1306 1534 -4595 344 200 0 0 chr12 22768198 22768258 -121018197 - MER41B LTR ERV1 -9 626 567 318 106 0 0 chr12 22768363 22768410 -121018045 + (TG)n Simple_repeat Simple_repeat 2 48 0 731 107 0 0 chr12 22768423 22768526 -121017929 - AluY SINE Alu -14 297 195 205 302 111 0 chr12 22769432 22769495 -121016960 + MIR3 SINE MIR 124 193 -15 255 186 17 68 chr12 22769592 22769651 -121016804 + L2 LINE L2 3217 3272 0 21 0 0 0 chr12 22769715 22769736 -121016719 + AT_rich Low_complexity Low_complexity 1 21 0 681 247 38 71 chr12 22770922 22771443 -121015012 + L1ME2 LINE L1 2173 2811 -3318 668 243 79 23 chr12 22771449 22771626 -121014829 - MLT1E LTR MaLR -2 591 438 361 266 28 0 chr12 22771682 22771791 -121014664 - MLT1E LTR MaLR -467 126 15 2610 249 64 85 chr12 22771801 22773327 -121013128 + L1ME2 LINE L1 2809 4302 -1827 180 0 0 0 chr12 22773329 22773349 -121013106 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 350 86 35 0 chr12 22773355 22773413 -121013042 - L1MA2 LINE L1 -22 6282 6223 5266 152 16 4 chr12 22773513 22774764 -121011691 - L1M1 LINE L1 -671 5631 4364 882 134 0 0 chr12 22774747 22774881 -121011574 - L1M1 LINE L1 -2289 3857 3724 * 2604 235 82 33 chr12 22774880 22776641 -121009814 + L1ME2 LINE L1 4298 6136 -11 281 262 49 93 chr12 22776646 22776871 -121009584 + L1MC4 LINE L1 7827 8041 -1 334 344 107 20 chr12 22778940 22779193 -121007262 - L2 LINE L2 -65 3207 2933 432 305 144 58 chr12 22779397 22780214 -121006241 - L2 LINE L2 -160 3112 2192 1866 164 0 0 chr12 22780356 22780648 -121005807 + AluSx SINE Alu 1 292 -20 232 125 0 0 chr12 22780651 22780683 -121005772 + (GGGGA)n Simple_repeat Simple_repeat 5 36 0 423 132 0 13 chr12 22780683 22780759 -121005696 + (GGAA)n Simple_repeat Simple_repeat 4 78 0 704 287 20 0 chr12 22781668 22781870 -121004585 - L2 LINE L2 -460 2854 2649 329 192 253 0 chr12 22781957 22782056 -121004399 - MIR SINE MIR -45 217 94 216 257 214 0 chr12 22783223 22783293 -121003162 - L2 LINE L2 -15 3257 3173 382 295 86 0 chr12 22787134 22787273 -120999182 + MIR SINE MIR 2 152 -110 33 25 0 0 chr12 22787275 22787315 -120999140 + AT_rich Low_complexity Low_complexity 1 40 0 435 317 79 18 chr12 22787315 22787643 -120998812 - L1ME LINE L1 -303 5818 5471 211 254 95 16 chr12 22787939 22788002 -120998453 - L2 LINE L2 -1 3312 3245 304 246 52 75 chr12 22788222 22788356 -120998099 - L1ME LINE L1 -1221 4925 4795 2572 228 66 37 chr12 22788959 22789745 -120996710 - L1ME2 LINE L1 -1 6163 5355 391 207 193 36 chr12 22789747 22789887 -120996568 + MLT1E2 LTR MaLR 3 164 -460 276 328 24 16 chr12 22789887 22790032 -120996423 + L1MA9 LINE L1 1356 1649 -5837 1688 256 71 36 chr12 22790530 22791516 -120994939 + L1MA9 LINE L1 1762 2775 -4721 631 74 0 0 chr12 22791513 22791594 -120994861 + L1PB1 LINE L1 5867 5947 -204 * 7937 210 57 29 chr12 22791584 22794349 -120992106 + L1MA9 LINE L1 2984 5938 -1793 2517 156 21 13 chr12 22794349 22794823 -120991632 + L1MA4 LINE L1 5812 6289 -11 7937 210 57 29 chr12 22794823 22796669 -120989786 + L1MA9 LINE L1 5938 7731 0 1421 250 95 41 chr12 22796673 22797157 -120989298 + MLT1E2 LTR MaLR 117 626 0 4504 257 67 52 chr12 22797157 22797267 -120989188 - L1M4 LINE L1 -787 5359 5252 1493 129 40 0 chr12 22797267 22797515 -120988940 - L1MA2 LINE L1 0 6304 6047 4504 257 67 52 chr12 22797515 22799551 -120986904 - L1M4 LINE L1 -894 5252 3181 321 230 35 9 chr12 22799540 22799653 -120986802 - L1M4 LINE L1 -3204 2942 2827 * 533 222 8 8 chr12 22799675 22799801 -120986654 - L1ME1 LINE L1 -6 6160 6035 2306 113 0 0 chr12 22800266 22800566 -120985889 - AluSx SINE Alu -4 308 9 365 292 85 0 chr12 22800692 22800822 -120985633 + MIR SINE MIR 109 249 -13 8664 100 45 0 chr12 22800953 22802185 -120984270 + HSMAR1 DNA Mariner 1 1287 0 331 223 60 130 chr12 22803020 22803204 -120983251 + MER5A DNA MER1_type 10 180 -9 256 362 79 0 chr12 22803480 22803632 -120982823 + L2 LINE L2 3145 3308 -5 22 70 0 0 chr12 22804323 22804366 -120982089 + AT_rich Low_complexity Low_complexity 1 43 0 431 174 79 9 chr12 22804497 22804611 -120981844 - MLT1A1 LTR MaLR -215 150 24 6089 150 64 15 chr12 22804611 22805201 -120981254 + L1MA5 LINE L1 4130 4690 -1613 1911 168 0 3 chr12 22805201 22805486 -120980969 + AluSx SINE Alu 1 284 -28 189 0 0 0 chr12 22805486 22805507 -120980948 + (CA)n Simple_repeat Simple_repeat 2 22 0 6089 150 64 15 chr12 22805507 22806331 -120980124 + L1MA5 LINE L1 4689 5586 -717 * 36190 101 8 10 chr12 22806326 22812495 -120973960 + L1PA6 LINE L1 2 6154 0 3442 144 21 72 chr12 22812495 22813254 -120973201 + L1MA5 LINE L1 5572 6295 -5 23 33 0 0 chr12 22813772 22813802 -120972653 + AT_rich Low_complexity Low_complexity 1 30 0 667 295 133 50 chr12 22816645 22817169 -120969286 - L2 LINE L2 0 3313 2748 434 244 42 17 chr12 22817607 22817726 -120968729 + MER5B DNA MER1_type 1 122 -56 441 247 21 0 chr12 22817795 22817892 -120968563 - MLT1J1 LTR MaLR -315 131 33 22 35 0 0 chr12 22818030 22818059 -120968396 + AT_rich Low_complexity Low_complexity 1 29 0 1930 130 0 0 chr12 22820099 22820368 -120966087 + AluSx SINE Alu 1 269 -43 363 306 38 33 chr12 22871006 22871189 -120915266 - L1ME4a LINE L1 -168 5953 5770 373 252 34 27 chr12 22871535 22871682 -120914773 - L1ME4a LINE L1 -296 5825 5678 338 245 46 61 chr12 22871773 22871969 -120914486 - L1ME4a LINE L1 -224 5897 5705 4581 88 13 0 chr12 22872015 22872648 -120913807 - L1PA11 LINE L1 0 6174 5534 392 282 10 10 chr12 22873637 22873740 -120912715 - L2 LINE L2 0 3272 3170 202 182 18 36 chr12 22874810 22874865 -120911590 + CT-rich Low_complexity Low_complexity 2 55 0 1226 44 11 22 chr12 22875011 22875191 -120911264 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1681 106 96 18 chr12 22875200 22875482 -120910973 - AluJo SINE Alu -8 304 1 345 194 0 21 chr12 22875853 22875946 -120910509 - L1MA4 LINE L1 0 6300 6210 265 259 19 0 chr12 22876682 22876736 -120909719 - L2 LINE L2 -8 3264 3210 418 276 103 43 chr12 22876823 22877008 -120909447 - MIR SINE MIR -13 249 54 341 297 0 7 chr12 22876995 22877174 -120909281 - MIR SINE MIR -6 256 38 * 22 0 0 0 chr12 22877870 22877892 -120908563 + AT_rich Low_complexity Low_complexity 1 22 0 265 229 0 0 chr12 22877950 22878011 -120908444 - L1ME4a LINE L1 -104 6017 5957 403 261 108 0 chr12 22878012 22878123 -120908332 + MER94 DNA DNA 12 134 0 1851 205 79 90 chr12 22878198 22878730 -120907725 + MLT1F1 LTR MaLR 10 560 -7 279 362 72 5 chr12 22878977 22879184 -120907271 - L1ME4a LINE L1 -2144 5664 5444 582 313 136 30 chr12 22879215 22879839 -120906616 - L1ME4a LINE L1 -786 5360 4671 955 117 7 0 chr12 22880051 22880196 -120906259 - L1PA10 LINE L1 -5 6163 6018 180 0 0 0 chr12 22880255 22880275 -120906180 + (T)n Simple_repeat Simple_repeat 1 20 0 616 319 14 9 chr12 22882785 22883001 -120903454 - MIR SINE MIR -31 231 15 24 53 0 0 chr12 22883293 22883331 -120903124 + AT_rich Low_complexity Low_complexity 1 38 0 377 326 45 23 chr12 22884796 22884928 -120901527 + L2 LINE L2 3138 3272 0 367 244 181 19 chr12 22885822 22885982 -120900473 - MIR SINE MIR -10 252 67 361 221 195 20 chr12 22886060 22886209 -120900246 + MIR SINE MIR 78 252 -10 4409 147 50 3 chr12 22886274 22886960 -120899495 - MER72 LTR ERV1 0 722 5 444 316 109 38 chr12 22887103 22887663 -120898792 - L2 LINE L2 -1163 2151 1552 758 177 0 0 chr12 22887956 22888080 -120898375 + FLAM_A SINE Alu 2 125 -8 313 254 28 79 chr12 22888207 22888384 -120898071 + HAL1 LINE L1 42 209 -2298 2151 268 160 24 chr12 22888491 22889690 -120896765 + HAL1 LINE L1 386 1747 -760 1746 115 4 19 chr12 22889700 22889960 -120896495 - MER4A LTR ERV1 0 664 409 1122 125 155 10 chr12 22889955 22890155 -120896300 + LTR8 LTR ERV1 29 257 -434 * 11310 105 109 81 chr12 22890155 22890364 -120896091 - MER4A-int LTR ERV1 -4103 2495 2293 2272 110 0 0 chr12 22890364 22890665 -120895790 + AluSx SINE Alu 1 301 -11 11310 105 109 81 chr12 22890665 22892156 -120894299 - MER4A-int LTR ERV1 -4305 2293 705 378 0 0 0 chr12 22892156 22892198 -120894257 + (TG)n Simple_repeat Simple_repeat 1 42 0 11310 105 109 81 chr12 22892198 22892924 -120893531 - MER4A-int LTR ERV1 -5893 705 1 1771 125 12 31 chr12 22892927 22893279 -120893176 - MER4A LTR ERV1 0 664 261 621 120 0 20 chr12 22893279 22893379 -120893076 - MER4A LTR ERV1 -566 98 1 17092 99 37 18 chr12 22893387 22896095 -120890360 - MER4A-int LTR ERV1 -2 6596 3837 3908 111 61 52 chr12 22896094 22896975 -120889480 - MER4A-int LTR ERV1 -2917 3681 2793 * 4402 174 47 5 chr12 22897514 22898308 -120888147 - MER21B LTR ERV1 -36 827 1 1096 240 178 53 chr12 22899815 22899963 -120886492 + L2 LINE L2 2827 2955 -358 1443 245 70 40 chr12 22899963 22900309 -120886146 + MER34 LTR ERV1 1 370 -172 1809 158 21 18 chr12 22900309 22900594 -120885861 - AluJo SINE Alu -26 286 1 1443 245 70 40 chr12 22900594 22900773 -120885682 + MER34 LTR ERV1 370 542 0 1096 240 178 53 chr12 22900773 22901057 -120885398 + L2 LINE L2 2955 3313 0 200 119 24 48 chr12 22903101 22903143 -120883312 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2311 144 33 0 chr12 22903153 22903548 -120882907 - L1PA16 LINE L1 -21 6145 5738 737 234 37 46 chr12 22903548 22903766 -120882689 - L2 LINE L2 -9 3304 3089 29 0 0 0 chr12 22904068 22904097 -120882358 + AT_rich Low_complexity Low_complexity 1 29 0 313 269 11 0 chr12 22905612 22905705 -120880750 + (CTA)n Simple_repeat Simple_repeat 1 94 0 274 340 52 13 chr12 22906089 22906242 -120880213 + MIR SINE MIR 71 229 -33 191 339 0 16 chr12 22906387 22906449 -120880006 + MIR SINE MIR 47 107 -155 283 177 149 139 chr12 22906602 22906798 -120879657 + MIR SINE MIR 1 188 -60 948 136 107 0 chr12 22906997 22907137 -120879318 + FRAM SINE Alu 1 152 -24 234 269 77 0 chr12 22907685 22907763 -120878692 - MIR SINE MIR -109 99 16 185 282 70 0 chr12 22908083 22908154 -120878301 - L2 LINE L2 -1336 1978 1903 295 383 11 34 chr12 22909968 22910143 -120876312 + MIR SINE MIR 36 206 -56 2072 127 13 13 chr12 22910148 22910455 -120876000 - AluSx SINE Alu -5 307 1 304 305 5 0 chr12 22913543 22913636 -120872819 - MLT1J2 LTR MaLR -308 142 64 556 300 47 6 chr12 22913689 22913859 -120872596 - MIR SINE MIR -55 207 31 1603 178 0 88 chr12 22914002 22914344 -120872111 - AluJb SINE Alu 0 312 1 231 367 42 39 chr12 22914633 22914864 -120871591 + MIR SINE MIR 23 248 -14 338 247 0 35 chr12 22917975 22918060 -120868395 - L2 LINE L2 -3 3310 3229 198 348 181 23 chr12 22918077 22918376 -120868079 + L2 LINE L2 2294 2639 -675 2291 108 10 0 chr12 22918381 22918678 -120867777 + AluSq SINE Alu 4 303 -10 21 71 0 0 chr12 22919269 22919311 -120867144 + AT_rich Low_complexity Low_complexity 1 42 0 2084 123 3 3 chr12 22920481 22920773 -120865682 - AluSx SINE Alu -20 292 1 285 366 98 5 chr12 22920773 22920967 -120865488 + L2 LINE L2 2848 3059 -213 225 182 15 76 chr12 22921164 22921230 -120865225 + L2 LINE L2 3250 3311 -2 638 366 81 25 chr12 22921603 22922272 -120864183 + L2 LINE L2 2550 3259 -13 185 0 40 0 chr12 22922273 22922298 -120864157 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 2117 206 30 8 chr12 22922445 22922947 -120863508 - LTR27 LTR ERV1 0 501 12 464 244 83 57 chr12 22924374 22924567 -120861888 - MIR SINE MIR -2 260 63 1004 219 0 0 chr12 22925234 22925435 -120861020 - L1PB4 LINE L1 -7 6149 5949 24 103 0 0 chr12 22925463 22925550 -120860905 + AT_rich Low_complexity Low_complexity 1 87 0 450 305 86 10 chr12 22925687 22925884 -120860571 - MIR SINE MIR -4 258 47 384 259 38 8 chr12 22926395 22926526 -120859929 + L1ME LINE L1 5690 5824 -297 399 217 8 33 chr12 22927051 22927171 -120859284 + MER102a DNA MER1_type 66 182 -148 2243 91 15 76 chr12 22927221 22927615 -120858840 + THE1C LTR MaLR 6 375 0 295 194 19 93 chr12 22927618 22927726 -120858729 + MER102a DNA MER1_type 231 330 0 327 285 76 35 chr12 22928196 22928340 -120858115 - MER5A DNA MER1_type -2 187 38 270 222 0 63 chr12 22928917 22928980 -120857475 + L2 LINE L2 3248 3306 -7 414 143 0 0 chr12 22929155 22929232 -120857223 + (TG)n Simple_repeat Simple_repeat 2 78 0 1587 174 31 31 chr12 22929239 22929527 -120856928 - AluJo SINE Alu -24 288 1 29 0 0 0 chr12 22929527 22929556 -120856899 + AT_rich Low_complexity Low_complexity 1 29 0 427 257 223 10 chr12 22930413 22930615 -120855840 - MIR SINE MIR -1 261 17 249 267 0 0 chr12 22933991 22934036 -120852419 + L2 LINE L2 3012 3056 -257 472 284 28 7 chr12 22934062 22934203 -120852252 + L2 LINE L2 3165 3308 -5 1976 90 65 7 chr12 22934616 22934894 -120851561 + AluSx SINE Alu 1 294 -18 1489 133 0 9 chr12 22934952 22935170 -120851285 + AluJb SINE Alu 87 302 -10 24 32 0 0 chr12 22935284 22935315 -120851140 + AT_rich Low_complexity Low_complexity 1 31 0 1872 174 13 7 chr12 22935587 22935897 -120850558 + AluJb SINE Alu 1 312 0 2448 60 7 3 chr12 22936279 22936580 -120849875 + AluY SINE Alu 1 302 -9 240 198 111 37 chr12 22936630 22936711 -120849744 + L2 LINE L2 3226 3312 -1 2306 267 132 70 chr12 22937390 22938521 -120847934 + L2 LINE L2 1836 3077 -236 1885 143 7 40 chr12 22938521 22938822 -120847633 + AluSx SINE Alu 1 291 -21 2306 267 132 70 chr12 22938822 22939074 -120847381 + L2 LINE L2 3077 3312 -1 208 271 53 66 chr12 22942662 22942813 -120843642 - L2 LINE L2 -1100 2214 2066 * 328 322 94 22 chr12 22942776 22942956 -120843499 + MIR3 SINE MIR 11 203 -5 403 310 64 35 chr12 22945657 22945860 -120840595 - MIR SINE MIR -11 251 43 261 0 0 0 chr12 22946486 22946515 -120839940 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2486 74 0 6 chr12 22946525 22946836 -120839619 + AluY SINE Alu 1 309 -2 219 170 0 0 chr12 22947496 22947543 -120838912 + (TTATA)n Simple_repeat Simple_repeat 4 50 0 278 238 113 0 chr12 22947942 22948022 -120838433 - L1MC/D LINE L1 -2210 5598 5510 22 70 0 0 chr12 22948259 22948302 -120838153 + AT_rich Low_complexity Low_complexity 1 43 0 404 256 0 17 chr12 22948583 22948700 -120837755 - L1MD1 LINE L1 0 6242 6128 444 112 0 34 chr12 22948891 22948980 -120837475 + (GGGA)n Simple_repeat Simple_repeat 3 88 0 491 279 71 31 chr12 22949137 22949363 -120837092 - MIR SINE MIR -13 249 15 575 251 76 53 chr12 22949460 22949631 -120836824 - MER21B LTR ERV1 -688 175 1 3966 189 79 5 chr12 22949693 22950461 -120835994 - MER21B LTR ERV1 -38 825 1 875 255 70 67 chr12 22950642 22951285 -120835170 + L1M4 LINE L1 4368 5012 -1134 1542 147 24 4 chr12 22951294 22951546 -120834909 + AluJb SINE Alu 2 258 -54 36 0 0 0 chr12 22951559 22951595 -120834860 + AT_rich Low_complexity Low_complexity 1 36 0 2141 109 7 0 chr12 22952002 22952295 -120834160 - AluSq SINE Alu -18 295 1 352 145 14 0 chr12 22953375 22953444 -120833011 - L1PB4 LINE L1 -3 6153 6084 306 217 204 51 chr12 22953573 22953730 -120832725 - Charlie2a DNA MER1_type -1203 1659 1479 356 262 37 0 chr12 22953830 22953937 -120832518 - Charlie2b DNA MER1_type -2116 666 556 * 568 307 18 26 chr12 22953934 22954162 -120832293 - Charlie2b DNA MER1_type -2549 313 88 694 46 0 0 chr12 22954359 22954446 -120832009 + AluY SINE Alu 217 303 -8 2462 135 13 8 chr12 22954446 22954838 -120831617 - MSTA LTR MaLR -34 394 1 877 146 111 12 chr12 22954861 22954968 -120831487 + AluJb SINE Alu 113 245 -67 294 29 0 0 chr12 22954968 22955003 -120831452 + (TTAGGG)n Simple_repeat Simple_repeat 3 37 0 877 146 111 12 chr12 22955003 22955066 -120831389 + AluJb SINE Alu 245 300 -12 278 202 269 0 chr12 22955790 22955894 -120830561 + MIR SINE MIR 66 197 -65 675 262 155 47 chr12 22956215 22957082 -120829373 + L1ME4a LINE L1 565 1395 -4736 902 260 79 47 chr12 22957435 22957959 -120828496 - MLT1G1 LTR MaLR -44 523 1 319 284 78 9 chr12 22957960 22958076 -120828379 - MLT1G1-int LTR MaLR -1 1734 1611 281 263 17 0 chr12 22958109 22958227 -120828228 + L1ME4a LINE L1 3121 3240 -2889 418 306 68 38 chr12 22958262 22958527 -120827928 + L1ME4a LINE L1 5619 5891 -213 1544 165 27 54 chr12 22958641 22958938 -120827517 + AluJo SINE Alu 1 289 -23 249 108 0 0 chr12 22960115 22960152 -120826303 + (TG)n Simple_repeat Simple_repeat 1 37 0 25 51 0 0 chr12 22960745 22960784 -120825671 + AT_rich Low_complexity Low_complexity 1 39 0 259 200 17 17 chr12 22960962 22961022 -120825433 + (CA)n Simple_repeat Simple_repeat 2 61 0 1498 245 162 17 chr12 22961176 22961768 -120824687 + HsTC2c DNA Tc2 1 678 -51 2245 115 0 0 chr12 22961772 22962067 -120824388 - AluSx SINE Alu -17 295 1 29 60 0 0 chr12 22962067 22962117 -120824338 + AT_rich Low_complexity Low_complexity 1 50 0 339 247 93 26 chr12 22962254 22962378 -120824077 - MIR SINE MIR -62 146 37 1043 221 43 35 chr12 22962689 22963037 -120823418 - HAL1 LINE L1 -877 1630 1280 431 290 65 0 chr12 22963043 22963181 -120823274 + L2 LINE L2 1912 2058 -1256 1210 112 22 0 chr12 22963181 22963359 -120823096 - AluSc SINE Alu 0 309 128 1262 268 100 35 chr12 22963359 22963818 -120822637 + L2 LINE L2 2169 2657 -657 828 257 125 21 chr12 22963820 22964100 -120822355 + LTR50 LTR ERVL 1 309 -486 2303 58 0 0 chr12 22964208 22964482 -120821973 + AluY SINE Alu 37 310 -1 225 338 0 0 chr12 22964485 22964553 -120821902 - Tigger2 DNA MER2_type -1399 1319 1252 300 189 45 9 chr12 22964855 22964966 -120821489 + (TA)n Simple_repeat Simple_repeat 1 115 0 522 294 65 85 chr12 22966157 22966404 -120820051 + L2 LINE L2 2221 2456 -858 1874 170 3 0 chr12 22966404 22966710 -120819745 - AluJo SINE Alu -5 307 1 522 294 65 85 chr12 22966710 22966921 -120819534 + L2 LINE L2 2456 2670 -644 2289 103 0 0 chr12 22966971 22967271 -120819184 - AluSg SINE Alu -10 300 1 267 339 73 9 chr12 22967429 22967538 -120818917 + L2 LINE L2 3143 3258 -14 2253 83 6 19 chr12 22968438 22968752 -120817703 - AluSg SINE Alu 0 310 1 2134 113 3 0 chr12 22968801 22969083 -120817372 + AluSc SINE Alu 1 283 -26 198 0 0 0 chr12 22969090 22969112 -120817343 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 553 286 33 29 chr12 22969526 22969767 -120816688 + HAL1b LINE L1 185 426 -922 538 257 47 0 chr12 22970043 22970186 -120816269 + MER63 DNA MER1_type 5 780 -56 982 285 35 38 chr12 22970186 22970555 -120815900 - MER93a LTR ERV1 0 402 35 1547 233 33 35 chr12 22970790 22971215 -120815240 - MLT1C LTR MaLR -2 465 42 330 143 0 0 chr12 22971475 22971524 -120814931 + Alu SINE Alu 1 44 -255 1282 137 5 10 chr12 22971524 22971728 -120814727 + AluSg/x SINE Alu 92 294 -18 28 0 0 0 chr12 22971729 22971757 -120814698 + AT_rich Low_complexity Low_complexity 1 28 0 529 201 50 78 chr12 22971970 22972149 -120814306 + L1ME LINE L1 5521 5694 -427 267 133 0 0 chr12 22973386 22973431 -120813024 + (TA)n Simple_repeat Simple_repeat 1 45 0 25 65 0 0 chr12 22973932 22973978 -120812477 + AT_rich Low_complexity Low_complexity 1 46 0 260 336 10 0 chr12 22974719 22974823 -120811632 + CT-rich Low_complexity Low_complexity 2 106 0 23 78 0 0 chr12 22976836 22976887 -120809568 + AT_rich Low_complexity Low_complexity 1 51 0 960 103 0 146 chr12 22977190 22977407 -120809048 - AluSg/x SINE Alu 0 317 128 225 0 0 0 chr12 22977407 22977432 -120809023 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1963 135 0 0 chr12 22977433 22977707 -120808748 - AluSx SINE Alu -36 276 3 2030 129 7 0 chr12 22977711 22977998 -120808457 - AluSx SINE Alu -18 294 6 296 48 24 0 chr12 22978278 22978320 -120808135 + (ATG)n Simple_repeat Simple_repeat 3 45 0 828 257 23 0 chr12 22978338 22978513 -120807942 - MIR SINE MIR -25 237 59 687 353 98 38 chr12 22979280 22979805 -120806650 - L2 LINE L2 0 3272 2715 464 332 47 14 chr12 22979926 22980137 -120806318 - MLT1J2 LTR MaLR 0 450 233 956 257 152 19 chr12 22980422 22980737 -120805718 + L2 LINE L2 2957 3313 0 498 328 41 6 chr12 22981064 22981235 -120805220 + MIR SINE MIR 15 191 -71 248 283 139 6 chr12 22981725 22981891 -120804564 + L2 LINE L2 1899 2086 -1228 197 342 13 0 chr12 22981966 22982042 -120804413 + L2 LINE L2 2337 2413 -901 327 377 31 21 chr12 22982388 22982579 -120803876 + L2 LINE L2 2866 3058 -214 1576 164 68 180 chr12 22982676 22983452 -120803003 - LTR8A LTR ERV1 -7 720 32 2087 111 3 13 chr12 22984034 22984332 -120802123 + AluSx SINE Alu 1 295 -17 3741 180 98 30 chr12 22984477 22984914 -120801541 + MER21B LTR ERV1 3 409 -454 2315 165 23 0 chr12 22984914 22985308 -120801147 - MER57A LTR ERV1 0 403 1 3741 180 98 30 chr12 22985308 22985676 -120800779 + MER21B LTR ERV1 409 863 0 282 238 78 25 chr12 22985865 22986037 -120800418 - L1MC/D LINE L1 -357 5813 5720 243 281 63 143 chr12 22986050 22986413 -120800042 - L2 LINE L2 -7 3306 2973 227 283 159 9 chr12 22986422 22986535 -120799920 - L1MC/D LINE L1 -482 5639 5510 376 344 52 9 chr12 22986544 22986774 -120799681 - L1MC/D LINE L1 -666 5496 5257 822 258 118 44 chr12 22986789 22987511 -120798944 - L1M4 LINE L1 -832 5314 4540 2199 104 30 0 chr12 22987883 22988182 -120798273 - AluSg SINE Alu -2 308 1 24 0 0 0 chr12 22988203 22988227 -120798228 + AT_rich Low_complexity Low_complexity 1 24 0 22 70 0 0 chr12 22988368 22988411 -120798044 + AT_rich Low_complexity Low_complexity 1 43 0 304 297 162 66 chr12 22988411 22989047 -120797408 - HAL1 LINE L1 0 2507 1811 293 282 146 45 chr12 22989060 22989436 -120797019 - HAL1 LINE L1 -1422 1085 672 326 209 0 0 chr12 22989599 22989666 -120796789 + MIR SINE MIR 169 235 -27 212 318 63 0 chr12 22989751 22989814 -120796641 + MIR3 SINE MIR 135 201 -7 1001 188 24 43 chr12 22989856 22990063 -120796392 - MER58A DNA MER1_type 0 224 22 194 274 0 32 chr12 22990306 22990368 -120796087 - MIR3 SINE MIR -21 187 128 590 233 195 19 chr12 22991123 22991333 -120795122 - MIR SINE MIR -3 259 13 321 170 0 0 chr12 22991339 22991392 -120795063 - L2 LINE L2 -1 3271 3219 183 238 24 0 chr12 22991360 22991402 -120795053 - MIR SINE MIR -16 246 204 * 344 333 37 30 chr12 22991499 22991634 -120794821 + L2 LINE L2 3137 3272 0 1864 137 34 17 chr12 22992275 22992568 -120793887 + AluSx SINE Alu 1 298 -14 261 188 0 0 chr12 22992620 22992668 -120793787 + L1MC4 LINE L1 6656 6703 -1339 295 213 31 8 chr12 22992674 22992801 -120793654 + (TA)n Simple_repeat Simple_repeat 1 130 0 2443 43 0 0 chr12 22992861 22993166 -120793289 + AluY SINE Alu 1 305 0 2128 122 0 0 chr12 22993179 22993490 -120792965 - AluSx SINE Alu -1 311 1 1408 103 15 0 chr12 22993997 22994192 -120792263 - L1PA15 LINE L1 -13 6152 5955 24 67 0 0 chr12 22994211 22994256 -120792199 + AT_rich Low_complexity Low_complexity 1 45 0 449 298 53 7 chr12 22995312 22995619 -120790836 - L1M4b LINE L1 -5119 1828 1385 211 305 211 0 chr12 22996168 22996296 -120790159 + L2 LINE L2 3104 3258 -55 420 20 0 0 chr12 22996490 22996539 -120789916 + (CA)n Simple_repeat Simple_repeat 2 50 0 2083 113 7 13 chr12 22997088 22997389 -120789066 - AluSx SINE Alu -13 299 1 2443 81 0 0 chr12 22997408 22997706 -120788749 + AluSg SINE Alu 1 298 -12 189 0 0 0 chr12 22998392 22998413 -120788042 + (TA)n Simple_repeat Simple_repeat 1 21 0 497 352 20 10 chr12 22998593 22998792 -120787663 - MIR SINE MIR -15 247 47 234 0 0 0 chr12 22999597 22999623 -120786832 + (A)n Simple_repeat Simple_repeat 1 26 0 1580 191 0 38 chr12 22999623 22999942 -120786513 + AluJo SINE Alu 1 307 -5 282 257 0 71 chr12 23001767 23001893 -120784562 + L1ME4a LINE L1 5481 5594 -527 412 273 9 9 chr12 23001968 23002078 -120784377 + MIR SINE MIR 123 232 -30 185 340 130 12 chr12 23002670 23002832 -120783623 + MIR SINE MIR 55 235 -27 234 258 102 24 chr12 23002832 23002999 -120783456 + L1ME4a LINE L1 5942 6121 0 736 191 0 0 chr12 23003076 23003207 -120783248 + FLAM_C SINE Alu 1 131 -2 22 80 0 0 chr12 23003249 23003299 -120783156 + AT_rich Low_complexity Low_complexity 1 50 0 456 218 54 57 chr12 23003663 23003943 -120782512 + L1MC5 LINE L1 7493 7771 -190 1030 179 71 9 chr12 23005080 23005292 -120781163 + MER8 DNA MER2_type 13 237 -2 14232 129 38 7 chr12 23005407 23006177 -120780278 - Tigger1 DNA MER2_type 0 2418 1673 2010 81 0 0 chr12 23006177 23006449 -120780006 - AluY SINE Alu 0 307 36 14232 129 38 7 chr12 23006449 23008022 -120778433 - Tigger1 DNA MER2_type -745 1673 1 30 100 0 0 chr12 23008325 23008425 -120778030 + AT_rich Low_complexity Low_complexity 1 100 0 315 194 28 14 chr12 23009246 23009318 -120777137 + L1MCa LINE L1 168 240 -6324 809 224 43 111 chr12 23009366 23009905 -120776550 + L1MCa LINE L1 64 565 -5480 1160 254 68 33 chr12 23010001 23010500 -120775955 + L1MCa LINE L1 571 1068 -4977 2809 148 60 24 chr12 23010506 23011085 -120775370 - LTR36 LTR ERV1 -1 610 11 2444 94 0 0 chr12 23011086 23011395 -120775060 + AluSg SINE Alu 1 309 -1 260 280 30 30 chr12 23011482 23011614 -120774841 - LTR36-int LTR ERV1 -52 8068 7937 316 191 44 0 chr12 23011928 23011996 -120774459 - MER49 LTR ERV1 -163 760 690 880 166 83 48 chr12 23012016 23012245 -120774210 - LTR36-int LTR ERV1 -181 6150 5914 10510 160 32 68 chr12 23012258 23012307 -120774148 - LTR36-int LTR ERV1 -455 5422 5373 1910 150 7 33 chr12 23012307 23012607 -120773848 + AluSx SINE Alu 1 292 -20 10510 160 32 68 chr12 23012607 23015159 -120771296 - LTR36-int LTR ERV1 -504 5373 3023 2637 182 17 36 chr12 23015159 23015735 -120770720 + L1M1 LINE L1 129 693 -6872 591 126 42 42 chr12 23015781 23015900 -120770555 - LTR36-int LTR ERV1 -2392 1893 1775 310 263 75 23 chr12 23015974 23016107 -120770348 - LTR36-int LTR ERV1 -2724 1561 1422 2173 110 3 0 chr12 23016403 23016695 -120769760 + AluSx SINE Alu 1 293 -19 588 287 25 42 chr12 23016769 23017006 -120769449 - LTR36-int LTR ERV1 -1439 347 115 3131 145 61 20 chr12 23017115 23017702 -120768753 - LTR36 LTR ERV1 0 611 1 2736 190 198 62 chr12 23017702 23017913 -120768542 + L1MCa LINE L1 1072 1253 -5463 2459 64 7 0 chr12 23017913 23018209 -120768246 - AluSg SINE Alu -12 298 1 2736 190 198 62 chr12 23018209 23019469 -120766986 + L1MCa LINE L1 1253 2764 -3952 412 303 71 55 chr12 23019499 23019946 -120766509 - MLT1H1 LTR MaLR -4 545 36 584 250 60 12 chr12 23020054 23020222 -120766233 + MIR SINE MIR 87 262 0 354 337 48 18 chr12 23020219 23020385 -120766070 + MIR3 SINE MIR 32 202 -6 * 683 186 8 8 chr12 23020572 23020701 -120765754 - FLAM_C SINE Alu -14 129 1 396 77 231 0 chr12 23020845 23020910 -120765545 + MADE1 DNA Mariner 1 80 0 219 326 14 83 chr12 23020958 23021102 -120765353 - L2 LINE L2 -457 2857 2724 888 266 107 15 chr12 23021707 23022110 -120764345 + LTR16A LTR ERVL 1 440 -10 261 0 0 0 chr12 23022356 23022385 -120764070 + (T)n Simple_repeat Simple_repeat 1 29 0 1983 112 11 11 chr12 23022982 23023267 -120763188 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr12 23023267 23023305 -120763150 + (CA)n Simple_repeat Simple_repeat 2 39 0 478 239 80 14 chr12 23023364 23023502 -120762953 - MIR SINE MIR -62 200 54 484 319 33 16 chr12 23023553 23023735 -120762720 + MER5A DNA MER1_type 1 185 -4 427 301 26 39 chr12 23023968 23024124 -120762331 + MER5B DNA MER1_type 25 178 0 2051 134 151 3 chr12 23026539 23026911 -120759544 + MSTA LTR MaLR 2 428 0 232 247 49 62 chr12 23027657 23027738 -120758717 - L2 LINE L2 -2 3311 3232 427 328 29 18 chr12 23028903 23029074 -120757381 + L2 LINE L2 62 234 -3080 649 291 109 53 chr12 23029126 23029230 -120757225 + L2 LINE L2 2308 2405 -909 1787 151 67 20 chr12 23029230 23029588 -120756867 + THE1C LTR MaLR 1 375 0 649 291 109 53 chr12 23029588 23029951 -120756504 + L2 LINE L2 2405 2801 -513 2104 150 0 0 chr12 23030120 23030414 -120756041 - AluSx SINE Alu -18 294 1 288 275 83 25 chr12 23030452 23030572 -120755883 + L2 LINE L2 3185 3311 -2 2318 99 0 0 chr12 23031598 23031890 -120754565 - AluSc SINE Alu -17 292 1 1770 156 39 0 chr12 23031892 23032175 -120754280 - AluJb SINE Alu -17 295 2 222 276 25 98 chr12 23033052 23033215 -120753240 + L2 LINE L2 2906 3056 -216 206 333 50 0 chr12 23033296 23033356 -120753099 + L2 LINE L2 3251 3313 0 234 0 0 0 chr12 23033489 23033515 -120752940 + (TA)n Simple_repeat Simple_repeat 2 27 0 2506 51 0 0 chr12 23033515 23033811 -120752644 - AluY SINE Alu -15 296 1 16668 197 27 40 chr12 23034821 23039524 -120746931 - L1PA13 LINE L1 -1 7600 3342 2883 10 0 0 chr12 23039524 23039836 -120746619 + AluYb8 SINE Alu 1 312 -6 16668 197 27 40 chr12 23039836 23043138 -120743317 - L1PA13 LINE L1 -4259 3342 1 195 307 22 80 chr12 23044236 23044373 -120742082 + L2 LINE L2 3141 3269 -3 3339 141 46 5 chr12 23044608 23045208 -120741247 - Tigger1 DNA MER2_type -1 2417 1793 1910 128 37 35 chr12 23045208 23045582 -120740873 - THE1C LTR MaLR 0 375 1 * 5730 117 20 13 chr12 23045582 23046517 -120739938 - Tigger1 DNA MER2_type -621 1797 856 1118 162 5 0 chr12 23046536 23046734 -120739721 + L1PB1 LINE L1 2 200 -6663 511 107 0 0 chr12 23046734 23046809 -120739646 + L1PB1 LINE L1 634 708 -6155 6605 169 24 7 chr12 23046809 23046886 -120739569 + L1PB1 LINE L1 4530 4604 -2263 2423 92 0 0 chr12 23046886 23047181 -120739274 + AluSc SINE Alu 1 295 -14 6605 169 24 7 chr12 23047181 23049407 -120737048 + L1PB1 LINE L1 4604 6867 0 4648 152 15 42 chr12 23049459 23050380 -120736075 - Tigger1 DNA MER2_type -1522 896 1 21 57 0 0 chr12 23050520 23050555 -120735900 + AT_rich Low_complexity Low_complexity 1 35 0 979 192 67 67 chr12 23050824 23050906 -120735549 + L1 LINE L1 2879 2960 -3186 2214 112 0 3 chr12 23050906 23051201 -120735254 + AluSx SINE Alu 2 295 -17 979 192 67 67 chr12 23051201 23051504 -120734951 + L1 LINE L1 2959 3264 -2882 425 293 178 11 chr12 23051505 23051696 -120734759 + MIR SINE MIR 36 258 -4 855 161 0 0 chr12 23051985 23052109 -120734346 - FLAM_C SINE Alu -19 124 1 745 121 26 0 chr12 23052163 23052279 -120734176 + FLAM_C SINE Alu 18 136 -7 3094 96 18 4 chr12 23053037 23053494 -120732961 + LTR8 LTR ERV1 8 470 -221 639 155 9 9 chr12 23053611 23053727 -120732728 + LTR8 LTR ERV1 469 584 -107 191 312 173 35 chr12 23053889 23054091 -120732364 + L2 LINE L2 2037 2266 -1048 2346 74 0 7 chr12 23054164 23054460 -120731995 - AluSx SINE Alu -1 311 18 4527 161 47 5 chr12 23055044 23055837 -120730618 - LTR1B LTR ERV1 0 826 1 259 238 16 32 chr12 23057054 23057117 -120729338 - L2 LINE L2 -1 3271 3210 1944 139 23 13 chr12 23058011 23058313 -120728142 - AluSx SINE Alu -7 305 1 326 333 82 58 chr12 23058477 23058771 -120727684 + L2 LINE L2 333 633 -2681 2206 114 0 10 chr12 23059468 23059767 -120726688 - AluSx SINE Alu -16 296 1 293 392 39 15 chr12 23059955 23060159 -120726296 - MIR SINE MIR -46 216 8 1917 179 0 0 chr12 23060202 23060509 -120725946 + AluJb SINE Alu 1 307 -5 3239 191 50 42 chr12 23060599 23061418 -120725037 - LTR1B LTR ERV1 0 826 1 514 313 30 12 chr12 23061733 23061899 -120724556 + L3 LINE CR1 988 1156 -421 295 210 0 16 chr12 23062020 23062082 -120724373 + L3 LINE CR1 1229 1289 -288 216 0 0 0 chr12 23062101 23062125 -120724330 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 618 347 25 12 chr12 23062134 23062376 -120724079 + MIR SINE MIR 5 249 -13 1175 130 0 0 chr12 23062384 23062545 -120723910 - AluSg/x SINE Alu -18 292 132 2220 109 3 0 chr12 23062545 23062838 -120723617 - AluSx SINE Alu -18 294 1 270 353 0 0 chr12 23062889 23062974 -120723481 + L3 LINE CR1 1491 1575 -2 26 30 0 0 chr12 23063473 23063506 -120722949 + AT_rich Low_complexity Low_complexity 1 33 0 694 181 0 0 chr12 23063507 23063623 -120722832 - AluJb SINE Alu -196 116 1 998 161 33 0 chr12 23063933 23064113 -120722342 + THE1B LTR MaLR 1 186 -178 250 108 0 0 chr12 23064124 23064161 -120722294 + THE1B LTR MaLR 328 364 0 1651 95 0 0 chr12 23064161 23064402 -120722053 + THE1A-int LTR MaLR 1 241 -1339 6913 91 11 0 chr12 23064413 23065371 -120721084 + THE1A-int LTR MaLR 606 1574 -6 2037 157 14 3 chr12 23065373 23065724 -120720731 + THE1A LTR MaLR 1 355 0 25 31 0 0 chr12 23065859 23065891 -120720564 + AT_rich Low_complexity Low_complexity 1 32 0 2135 188 98 82 chr12 23066312 23066796 -120719659 - LTR8A LTR ERV1 -4 723 223 2385 132 5 24 chr12 23066796 23067167 -120719288 - THE1B LTR MaLR 0 364 1 2135 188 98 82 chr12 23067167 23067363 -120719092 - LTR8A LTR ERV1 -504 223 32 187 271 21 21 chr12 23068241 23068289 -120718166 + MIR SINE MIR 98 145 -63 203 61 30 0 chr12 23068419 23068452 -120718003 + (TC)n Simple_repeat Simple_repeat 1 34 0 226 301 120 6 chr12 23068839 23069022 -120717433 - L1ME4a LINE L1 -72 6049 5846 1963 142 0 14 chr12 23069119 23069415 -120717040 + AluJb SINE Alu 9 300 -12 22 35 0 0 chr12 23069460 23069489 -120716966 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr12 23069515 23069539 -120716916 + AT_rich Low_complexity Low_complexity 1 24 0 7199 51 7 0 chr12 23071864 23073233 -120713222 - L1PA7 LINE L1 -2 6152 4780 5570 83 0 6 chr12 23073233 23074036 -120712419 + L1PA7 LINE L1 3974 4771 -1375 216 0 0 0 chr12 23074117 23074141 -120712314 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1029 262 88 30 chr12 23075135 23075779 -120710676 + L1M4 LINE L1 4226 4907 -1239 40466 36 24 2 chr12 23075794 23081836 -120704619 + L1PA3 LINE L1 1 6567 -20 3003 42 3 16 chr12 23081836 23082221 -120704234 + L1PA5 LINE L1 5770 6149 -5 40466 36 24 2 chr12 23082221 23082243 -120704212 + L1PA3 LINE L1 6567 6587 0 530 288 48 33 chr12 23082263 23082659 -120703796 + L1M4 LINE L1 4932 5333 -813 3482 167 46 15 chr12 23082720 23083392 -120703063 + L1M1 LINE L1 16 708 -6857 6136 96 29 50 chr12 23083393 23083481 -120702974 + L1M1 LINE L1 2110 2198 -5367 2102 122 0 7 chr12 23083481 23083801 -120702654 - AluSx SINE Alu 0 318 1 6136 96 29 50 chr12 23083801 23084689 -120701766 + L1M1 LINE L1 2198 3103 -4462 2431 78 7 0 chr12 23084689 23084996 -120701459 + AluY SINE Alu 1 309 -2 6136 96 29 50 chr12 23084996 23085087 -120701368 + L1M1 LINE L1 3103 3156 -4409 2022 133 3 3 chr12 23085087 23085373 -120701082 + AluSx SINE Alu 1 286 -26 6136 96 29 50 chr12 23085373 23085444 -120701011 + L1M1 LINE L1 3156 3227 -4338 28946 110 11 67 chr12 23085455 23091977 -120694478 + L1PA7 LINE L1 12 6153 -1 6123 230 52 28 chr12 23091974 23094367 -120692088 + L1ME1 LINE L1 3326 5784 -382 * 1869 209 90 11 chr12 23094367 23094835 -120691620 - MLT1D LTR MaLR 0 505 1 6123 230 52 28 chr12 23094835 23095204 -120691251 + L1ME1 LINE L1 5784 6143 -23 298 243 0 0 chr12 23095270 23095340 -120691115 - L1ME LINE L1 -617 5547 5478 * 313 159 16 16 chr12 23095331 23095394 -120691061 + L1ME LINE L1 5528 5590 -580 852 285 89 47 chr12 23095401 23095896 -120690559 - MLT1F LTR MaLR -11 531 16 342 241 0 117 chr12 23096105 23096250 -120690205 - MLT1F-int LTR MaLR -171 1200 1073 2054 129 0 3 chr12 23096322 23096609 -120689846 - AluSx SINE Alu -21 291 6 264 304 55 17 chr12 23097262 23097443 -120689012 - MLT1F-int LTR MaLR -832 539 352 248 224 0 15 chr12 23097542 23097609 -120688846 - MLT1F-int LTR MaLR -1301 70 5 349 234 123 58 chr12 23097613 23097858 -120688597 - MLT1H1 LTR MaLR 0 555 323 252 310 63 7 chr12 23098075 23098217 -120688238 + HAL1b LINE L1 1187 1336 -12 2027 153 31 0 chr12 23098839 23099133 -120687322 - AluSx SINE Alu -9 303 1 22 0 0 0 chr12 23099292 23099314 -120687141 + AT_rich Low_complexity Low_complexity 1 22 0 295 332 109 26 chr12 23099333 23099562 -120686893 - MIR SINE MIR -12 250 3 537 282 129 53 chr12 23100274 23100682 -120685773 - Charlie8 DNA MER1_type -2143 274 1 4902 33 0 2 chr12 23101233 23101810 -120684645 - L1PA5 LINE L1 -11 6143 5568 422 285 90 62 chr12 23101897 23102153 -120684302 - L2 LINE L2 -20 3293 3031 1823 231 112 50 chr12 23102224 23102646 -120683809 + L1ME1 LINE L1 5458 5937 -229 2048 139 7 0 chr12 23102646 23102941 -120683514 + AluSx SINE Alu 2 298 -14 1823 231 112 50 chr12 23102941 23103181 -120683274 + L1ME1 LINE L1 5937 6161 -5 2121 134 0 0 chr12 23103939 23104238 -120682217 - AluSx SINE Alu -13 299 1 742 134 8 8 chr12 23104263 23104390 -120682065 + THE1C-int LTR MaLR 1454 1580 0 2571 119 0 11 chr12 23104390 23104769 -120681686 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr12 23106525 23106553 -120679902 + AT_rich Low_complexity Low_complexity 1 28 0 2161 106 20 0 chr12 23106556 23106857 -120679598 + AluSp SINE Alu 1 307 -6 421 301 35 38 chr12 23106884 23107200 -120679255 + L1MEd LINE L1 943 1257 -4862 22 0 0 0 chr12 23107246 23107268 -120679187 + AT_rich Low_complexity Low_complexity 1 22 0 230 70 23 23 chr12 23107618 23107661 -120678794 + L1ME2 LINE L1 4989 5031 -1115 24 32 0 0 chr12 23107711 23107742 -120678713 + AT_rich Low_complexity Low_complexity 1 31 0 497 91 0 0 chr12 23107750 23107827 -120678628 - L1MA7 LINE L1 -2 6289 6213 2667 206 105 35 chr12 23107828 23108646 -120677809 + L1ME2 LINE L1 5022 5781 -383 1868 119 129 78 chr12 23108646 23109057 -120677398 - MSTB1 LTR MaLR 0 432 1 2126 116 0 35 chr12 23109059 23109391 -120677064 + AluSx SINE Alu 1 312 0 2667 206 105 35 chr12 23109391 23109522 -120676933 + L1ME2 LINE L1 5781 5901 -263 2496 62 0 3 chr12 23109522 23109827 -120676628 - AluY SINE Alu -7 304 1 2667 206 105 35 chr12 23109827 23109943 -120676512 + L1ME2 LINE L1 5901 6155 -9 592 204 25 45 chr12 23109958 23110115 -120676340 + L1MC4 LINE L1 5425 5578 -2230 1398 253 60 21 chr12 23110151 23110258 -120676197 + L1MC4 LINE L1 7461 7562 -480 2428 71 0 3 chr12 23110258 23110568 -120675887 + AluY SINE Alu 1 309 -2 1398 253 60 21 chr12 23110568 23110990 -120675465 + L1MC4 LINE L1 7562 8011 -31 1873 176 7 0 chr12 23111001 23111297 -120675158 - AluJb SINE Alu -14 298 1 25 65 0 0 chr12 23111306 23111352 -120675103 + AT_rich Low_complexity Low_complexity 1 46 0 1505 98 0 69 chr12 23112085 23112331 -120674124 + MER30 DNA MER1_type 1 229 -1 2928 262 51 52 chr12 23112861 23113985 -120672470 + HsTC2 DNA Tc2 7 1129 -769 25 0 0 0 chr12 23114032 23114057 -120672398 + AT_rich Low_complexity Low_complexity 1 25 0 678 287 33 37 chr12 23114075 23114504 -120671951 - L1M4 LINE L1 -1569 4577 4151 552 30 0 0 chr12 23114560 23114626 -120671829 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 2347 80 7 0 chr12 23114644 23114944 -120671511 - AluY SINE Alu -9 302 1 234 286 50 8 chr12 23115096 23115215 -120671240 - L1M4 LINE L1 -2231 3915 3792 2552 251 74 27 chr12 23115617 23115880 -120670575 + L1ME1 LINE L1 3091 3340 -2806 1601 163 58 34 chr12 23115880 23116174 -120670281 + AluSx SINE Alu 1 301 -11 2552 251 74 27 chr12 23116174 23116988 -120669467 + L1ME1 LINE L1 3340 4219 -1927 783 116 0 36 chr12 23117046 23117175 -120669280 + L1MA1 LINE L1 6014 6139 -163 7624 26 0 1 chr12 23117175 23118508 -120667947 + L1PA4 LINE L1 4821 6152 -3 1236 71 18 6 chr12 23118533 23118703 -120667752 + L1MA1 LINE L1 6131 6302 0 341 194 107 0 chr12 23118721 23118824 -120667631 + L1ME1 LINE L1 5158 5271 -875 2286 231 98 28 chr12 23118958 23119680 -120666775 + L1ME1 LINE L1 5389 6161 -5 9248 168 72 83 chr12 23119948 23121655 -120664800 + L1MC1 LINE L1 6 1730 -4696 2084 145 30 6 chr12 23121655 23122020 -120664435 - THE1C LTR MaLR 0 375 2 9248 168 72 83 chr12 23122020 23122887 -120663568 + L1MC1 LINE L1 1730 2605 -3821 1552 167 28 31 chr12 23122887 23123175 -120663280 + AluJo SINE Alu 12 298 -14 9248 168 72 83 chr12 23123175 23123783 -120662672 + L1MC1 LINE L1 2605 3295 -3131 1800 186 0 0 chr12 23123783 23124084 -120662371 + AluJb SINE Alu 1 301 -11 9248 168 72 83 chr12 23124084 23124171 -120662284 + L1MC1 LINE L1 3295 3381 -3045 5975 142 17 47 chr12 23124158 23125302 -120661153 + L1MC1 LINE L1 5495 6602 -11 * 21 36 0 0 chr12 23125526 23125554 -120660901 + AT_rich Low_complexity Low_complexity 1 28 0 226 307 30 40 chr12 23125609 23125710 -120660745 + MIR3 SINE MIR 78 177 -31 803 236 66 84 chr12 23126003 23126237 -120660218 + L1M1 LINE L1 2718 2955 -4791 794 173 0 0 chr12 23126237 23126370 -120660085 + FLAM_C SINE Alu 1 133 0 803 236 66 84 chr12 23126370 23126830 -120659625 + L1M1 LINE L1 2955 3473 -4273 369 260 0 0 chr12 23126864 23126937 -120659518 + Tigger3(Golem) DNA MER2_type 2 74 -2955 * 2553 132 63 5 chr12 23126934 23127360 -120659095 + Tigger3(Golem) DNA MER2_type 2577 3027 -2 679 258 41 38 chr12 23127360 23127651 -120658804 + L1MEc LINE L1 2211 2502 -3894 1079 252 89 33 chr12 23127770 23128225 -120658230 - MER76 LTR ERV -34 654 101 2312 171 31 19 chr12 23128225 23128646 -120657809 + MSTB LTR MaLR 1 426 0 1079 252 89 33 chr12 23128646 23128754 -120657701 - MER76 LTR ERV -587 101 1 894 271 148 7 chr12 23128791 23128906 -120657549 + L1MEc LINE L1 2551 2648 -3567 2395 164 16 30 chr12 23128906 23129345 -120657110 + Tigger2a DNA MER2_type 1 433 -1 894 271 148 7 chr12 23129345 23129668 -120656787 + L1MEc LINE L1 2648 3051 -3164 3475 160 40 18 chr12 23129986 23130643 -120655812 - LTR51 LTR ERV1 0 671 1 276 233 0 17 chr12 23130643 23130703 -120655752 - MER106A DNA MER1_type -177 59 1 687 303 26 34 chr12 23130731 23130965 -120655490 - HERVL LTR ERVL -1102 4552 4321 671 350 43 12 chr12 23131041 23131298 -120655157 + ERVL LTR ERVL 4093 4357 -1407 2481 73 3 6 chr12 23134165 23134479 -120651976 + AluSp SINE Alu 1 313 0 243 0 0 0 chr12 23134698 23134725 -120651730 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 816 161 15 0 chr12 23134731 23134868 -120651587 - U1 snRNA snRNA 0 165 27 414 0 0 0 chr12 23137786 23137832 -120648623 + (CA)n Simple_repeat Simple_repeat 2 47 0 855 201 34 57 chr12 23138032 23138241 -120648214 - MER20 DNA MER1_type -9 210 7 800 133 0 0 chr12 23138408 23138528 -120647927 - AluSg/x SINE Alu -1 308 189 21 36 0 0 chr12 23138900 23138928 -120647527 + AT_rich Low_complexity Low_complexity 1 28 0 202 231 0 0 chr12 23139664 23139703 -120646752 + (TATG)n Simple_repeat Simple_repeat 4 42 0 28 0 0 0 chr12 23140342 23140370 -120646085 + AT_rich Low_complexity Low_complexity 1 28 0 236 264 139 0 chr12 23141690 23141762 -120644693 + MIR3 SINE MIR 124 205 -3 267 133 0 0 chr12 23142455 23142500 -120643955 + (GA)n Simple_repeat Simple_repeat 2 46 0 231 258 91 15 chr12 23143113 23143179 -120643276 - MER5A DNA MER1_type 0 189 119 563 198 0 0 chr12 23143517 23143628 -120642827 - L1MA9 LINE L1 -4 6308 6198 202 250 0 52 chr12 23144598 23144694 -120641761 + A-rich Low_complexity Low_complexity 4 94 0 616 151 0 0 chr12 23144904 23144997 -120641458 + AluJ/FLAM SINE Alu 6 98 -214 34933 33 1 0 chr12 23245814 23250844 -120535611 + L1PA2 LINE L1 1117 6150 -5 1553 219 175 16 chr12 23250844 23251392 -120535063 - L1MEc LINE L1 -3123 3417 2783 462 235 62 8 chr12 23251391 23251555 -120534900 - L1MEc LINE L1 -5044 1496 1320 * 2023 180 171 35 chr12 23251558 23252130 -120534325 - L1MA9 LINE L1 -38 6274 5625 870 235 56 42 chr12 23252135 23252556 -120533899 - L1MEc LINE L1 -5168 1362 986 292 316 39 96 chr12 23252807 23253035 -120533420 - L1MEc LINE L1 -6017 704 499 2345 100 0 3 chr12 23253035 23253345 -120533110 + AluSg SINE Alu 1 309 -1 292 316 39 96 chr12 23253345 23253448 -120533007 - L1MEc LINE L1 -6222 499 392 199 234 78 16 chr12 23254497 23254561 -120531894 - L2 LINE L2 -5 3308 3241 402 312 89 47 chr12 23254620 23255001 -120531454 - L2 LINE L2 -40 3273 2877 314 271 187 0 chr12 23255719 23255874 -120530581 - L2 LINE L2 -11 3302 3119 186 264 0 0 chr12 23255895 23255948 -120530507 + MIR SINE MIR 73 125 -137 206 213 0 0 chr12 23257919 23257966 -120528489 + T-rich Low_complexity Low_complexity 3 49 0 21 0 0 0 chr12 23258957 23258978 -120527477 + AT_rich Low_complexity Low_complexity 1 21 0 201 200 25 0 chr12 23259446 23259486 -120526969 + L2 LINE L2 3190 3230 -83 193 178 43 0 chr12 23260084 23260127 -120526328 + MIR SINE MIR 94 149 -64 246 309 103 0 chr12 23260233 23260330 -120526125 - L2 LINE L2 -3 3269 3163 206 293 114 29 chr12 23260945 23261085 -120525370 + L2 LINE L2 3162 3313 0 2398 130 0 16 chr12 23261923 23262293 -120524162 - THE1B LTR MaLR 0 364 1 1176 269 102 26 chr12 23262514 23263201 -120523254 - L2 LINE L2 -5 3308 2575 2592 209 22 0 chr12 23263210 23263245 -120523210 - MLT2B2 LTR ERVL -15 500 467 450 0 0 0 chr12 23263245 23263295 -120523160 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2592 209 22 0 chr12 23263295 23263748 -120522707 - MLT2B2 LTR ERVL -48 467 1 291 273 206 26 chr12 23263748 23263942 -120522513 - L2 LINE L2 -736 2578 2350 422 331 99 15 chr12 23264060 23264838 -120521617 + L1ME1 LINE L1 1763 2629 -4092 871 291 52 5 chr12 23264899 23265321 -120521134 + L1ME1 LINE L1 3835 4276 -2264 228 288 0 17 chr12 23265480 23265539 -120520916 + L1ME1 LINE L1 4446 4503 -2037 21 71 0 0 chr12 23265561 23265603 -120520852 + AT_rich Low_complexity Low_complexity 1 42 0 1259 282 127 25 chr12 23265723 23265924 -120520531 + L1ME1 LINE L1 4772 4951 -1589 252 0 0 0 chr12 23265924 23265952 -120520503 + (TG)n Simple_repeat Simple_repeat 1 28 0 1259 282 127 25 chr12 23265952 23266655 -120519800 + L1ME1 LINE L1 4951 5768 -772 2265 96 0 3 chr12 23267967 23268269 -120518186 + AluSg1 SINE Alu 1 301 -8 421 303 19 49 chr12 23268903 23269065 -120517390 + MIR3 SINE MIR 42 198 -10 373 256 73 80 chr12 23270205 23270342 -120516113 - L2 LINE L2 0 3272 3137 2105 255 85 2 chr12 23270604 23271416 -120515039 + L1M4 LINE L1 4077 4955 -1191 1148 198 87 5 chr12 23272213 23272665 -120513790 - MER34 LTR ERV1 0 542 27 1116 285 85 8 chr12 23273003 23273368 -120513087 + MER69 DNA AcHobo 1 393 -2133 2998 240 61 19 chr12 23273737 23274770 -120511685 + MER69 DNA AcHobo 1451 2526 0 937 196 11 32 chr12 23274919 23275108 -120511347 - MER5A DNA MER1_type -2 187 3 318 307 73 20 chr12 23275121 23275271 -120511184 + L2 LINE L2 1519 1676 -1638 1677 269 161 34 chr12 23275280 23276513 -120509942 + L2 LINE L2 1917 3313 0 2825 10 0 0 chr12 23277259 23277566 -120508889 - AluYa5 SINE Alu -4 307 1 275 0 0 28 chr12 23277655 23277691 -120508764 + (CA)n Simple_repeat Simple_repeat 2 36 0 7374 41 3 1 chr12 23277809 23279504 -120506951 + L1PA5 LINE L1 4459 6154 0 1350 235 92 29 chr12 23279507 23280055 -120506400 + L1ME1 LINE L1 5962 6689 -17 1322 197 122 3 chr12 23280109 23280404 -120506051 - MER7A DNA MER2_type 0 346 19 295 283 72 36 chr12 23280426 23280564 -120505891 + L1ME3 LINE L1 6018 6160 -2 450 0 0 0 chr12 23281641 23281691 -120504764 + (TG)n Simple_repeat Simple_repeat 2 51 0 23 150 0 0 chr12 23282316 23282356 -120504099 + AT_rich Low_complexity Low_complexity 1 40 0 381 93 0 0 chr12 23282488 23282507 -120503948 + (CA)n Simple_repeat Simple_repeat 1 73 0 381 93 0 0 chr12 23282507 23282561 -120503894 + (CA)n Simple_repeat Simple_repeat 2 55 0 636 293 112 24 chr12 23282754 23283188 -120503267 + MLT1H1 LTR MaLR 42 519 -36 301 196 0 0 chr12 23283264 23283320 -120503135 - MLT1H LTR MaLR 0 549 494 1199 144 65 5 chr12 23283331 23283532 -120502923 - MER58A DNA MER1_type -10 214 2 1642 205 66 88 chr12 23283532 23284030 -120502425 - MLT1H LTR MaLR -49 500 14 209 339 0 0 chr12 23284086 23284145 -120502310 - MIR SINE MIR -59 149 91 1890 170 37 49 chr12 23284340 23284890 -120501565 + MLT2A2 LTR ERVL 1 546 -8 360 0 0 0 chr12 23287344 23287384 -120499071 + (CA)n Simple_repeat Simple_repeat 1 40 0 402 241 9 18 chr12 23287481 23287593 -120498862 - MER102a DNA MER1_type -6 324 214 452 249 67 84 chr12 23287685 23287910 -120498545 - MER102a DNA MER1_type -108 222 2 206 213 0 82 chr12 23287925 23287986 -120498469 - L2 LINE L2 -695 2619 2564 966 255 41 4 chr12 23288536 23288779 -120497676 + MIR SINE MIR 8 259 -3 502 337 49 0 chr12 23288803 23288966 -120497489 + MIR SINE MIR 6 176 -86 523 188 20 0 chr12 23289208 23289309 -120497146 + FLAM_C SINE Alu 1 103 -40 237 33 0 0 chr12 23289685 23289715 -120496740 + (TG)n Simple_repeat Simple_repeat 1 30 0 474 311 69 47 chr12 23290674 23291089 -120495366 - L2 LINE L2 -126 3187 2761 241 315 31 47 chr12 23292610 23292737 -120493718 - MIR SINE MIR -108 154 30 285 75 0 0 chr12 23292906 23292946 -120493509 + (CA)n Simple_repeat Simple_repeat 1 40 0 219 88 0 0 chr12 23295693 23295727 -120490728 + (TG)n Simple_repeat Simple_repeat 1 34 0 26 30 0 0 chr12 23295913 23295946 -120490509 + AT_rich Low_complexity Low_complexity 1 33 0 333 118 0 0 chr12 23297889 23297940 -120488515 + (TA)n Simple_repeat Simple_repeat 1 51 0 239 194 69 0 chr12 23297940 23298012 -120488443 - L1MCa LINE L1 -4358 2068 1992 330 132 0 0 chr12 23298079 23298132 -120488323 + (TA)n Simple_repeat Simple_repeat 1 53 0 518 132 37 31 chr12 23298166 23298412 -120488043 + GA-rich Low_complexity Low_complexity 1 247 0 207 162 0 0 chr12 23298626 23298663 -120487792 + (CA)n Simple_repeat Simple_repeat 1 37 0 546 295 120 13 chr12 23299165 23299399 -120487056 - MIR SINE MIR -2 260 2 401 0 20 0 chr12 23300121 23300170 -120486285 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 23 0 0 0 chr12 23300550 23300573 -120485882 + AT_rich Low_complexity Low_complexity 1 23 0 1759 309 131 27 chr12 23302456 23303695 -120482760 + L2 LINE L2 1835 3222 -91 1719 127 0 12 chr12 23303695 23303947 -120482508 - AluSx SINE Alu 0 312 64 1759 309 131 27 chr12 23303947 23304013 -120482442 + L2 LINE L2 3222 3280 -33 290 195 35 11 chr12 23304055 23304142 -120482313 + (TA)n Simple_repeat Simple_repeat 2 90 0 219 182 0 91 chr12 23304330 23304396 -120482059 + G-rich Low_complexity Low_complexity 1 60 0 21 57 0 0 chr12 23304415 23304450 -120482005 + GC_rich Low_complexity Low_complexity 1 35 0 180 217 0 0 chr12 23304464 23304510 -120481945 + G-rich Low_complexity Low_complexity 1 46 0 213 250 0 0 chr12 23304543 23304587 -120481868 + G-rich Low_complexity Low_complexity 1 44 0 270 0 0 0 chr12 23304844 23304874 -120481581 + (TA)n Simple_repeat Simple_repeat 1 30 0 183 80 0 0 chr12 23304873 23304898 -120481557 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 805 127 0 8 chr12 23304920 23305038 -120481417 + FLAM_C SINE Alu 5 121 -22 47 33 0 0 chr12 23305039 23305100 -120481355 + AT_rich Low_complexity Low_complexity 1 61 0 1778 157 20 10 chr12 23305998 23306291 -120480164 + AluJo SINE Alu 1 296 -16 1638 149 51 4 chr12 23306529 23306683 -120479772 - AluJo SINE Alu -24 288 114 180 0 0 0 chr12 23306683 23306703 -120479752 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1638 149 51 4 chr12 23306703 23306823 -120479632 - AluJo SINE Alu -198 114 1 23 0 0 0 chr12 23307176 23307199 -120479256 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr12 23308814 23308849 -120477606 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr12 23309111 23309131 -120477324 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 367 349 33 13 chr12 23309420 23309572 -120476883 - MIR SINE MIR -95 167 13 2218 225 65 41 chr12 23310828 23311530 -120474925 + L1ME3 LINE L1 5237 5954 -208 1604 190 53 10 chr12 23311526 23312100 -120474355 + L1ME LINE L1 4898 5587 -579 * 3589 59 6 2 chr12 23312094 23312585 -120473870 - L1P LINE L1 -2553 3593 3101 788 37 37 0 chr12 23312715 23312823 -120473632 - L1P LINE L1 -6032 114 3 713 263 36 33 chr12 23312954 23313289 -120473166 + L1M4 LINE L1 3205 3540 -2606 1742 271 46 2 chr12 23313324 23313914 -120472541 + L1M4 LINE L1 3631 4246 -1900 2411 233 56 11 chr12 23314094 23315098 -120471357 - L1ME LINE L1 -398 5766 4687 1830 114 0 19 chr12 23315098 23315384 -120471071 - AluSc SINE Alu 0 302 22 2411 233 56 11 chr12 23315384 23315580 -120470875 - L1ME LINE L1 -1477 4687 4501 180 193 0 45 chr12 23315686 23315774 -120470681 + C-rich Low_complexity Low_complexity 2 85 0 21 36 0 0 chr12 23315925 23315953 -120470502 + GC_rich Low_complexity Low_complexity 1 28 0 441 306 18 14 chr12 23316470 23316631 -120469824 + MIR SINE MIR 2 171 -37 333 173 67 29 chr12 23316700 23316804 -120469651 + L1M4 LINE L1 5242 5349 -797 544 335 73 11 chr12 23316807 23317094 -120469361 - L2 LINE L2 -634 2680 2376 214 211 0 35 chr12 23317106 23317163 -120469292 + MIR SINE MIR 196 250 -12 263 91 0 23 chr12 23317740 23317784 -120468671 + (GGA)n Simple_repeat Simple_repeat 3 45 0 237 341 12 0 chr12 23317806 23317888 -120468567 - MIR SINE MIR -30 232 150 248 257 14 0 chr12 23318226 23318296 -120468159 + MLT1J1 LTR MaLR 374 444 -2 240 98 122 0 chr12 23318319 23318360 -120468095 - MIR SINE MIR -108 154 109 208 155 86 35 chr12 23319060 23319118 -120467337 - MIR SINE MIR -90 172 112 1987 151 0 3 chr12 23320615 23320914 -120465541 - AluJb SINE Alu -14 298 1 341 306 150 38 chr12 23321319 23321718 -120464737 + L2 LINE L2 2069 2512 -802 211 343 10 20 chr12 23321966 23322068 -120464387 + L2 LINE L2 2866 2966 -306 2202 110 36 36 chr12 23323393 23323757 -120462698 - THE1B LTR MaLR 0 364 1 847 269 84 45 chr12 23323864 23324221 -120462234 + MLT1H LTR MaLR 1 371 -178 253 229 49 0 chr12 23324771 23324832 -120461623 + L2 LINE L2 3209 3272 0 2322 179 58 52 chr12 23327107 23327611 -120458844 - MLT2B2 LTR ERVL -8 507 1 417 348 88 48 chr12 23327764 23328118 -120458337 - L2 LINE L2 -19 3253 2886 190 222 89 0 chr12 23328577 23328622 -120457833 + L2 LINE L2 3265 3313 0 531 284 115 0 chr12 23329664 23329872 -120456583 + MIR SINE MIR 29 260 -2 804 244 44 36 chr12 23330018 23330268 -120456187 - MIR SINE MIR 0 262 11 187 354 0 15 chr12 23332143 23332208 -120454247 - L3 LINE CR1 0 1577 1514 21 0 0 0 chr12 23332683 23332704 -120453751 + AT_rich Low_complexity Low_complexity 1 21 0 241 293 13 0 chr12 23334269 23334344 -120452111 + MIR SINE MIR 187 262 0 1307 221 62 15 chr12 23334455 23334780 -120451675 + MER2 DNA MER2_type 1 340 -4 207 327 188 0 chr12 23335110 23335211 -120451244 + MIR3 SINE MIR 64 183 -25 243 0 0 0 chr12 23335214 23335241 -120451214 + (T)n Simple_repeat Simple_repeat 1 27 0 1717 146 62 46 chr12 23337991 23338360 -120448095 + THE1C LTR MaLR 1 375 0 1558 160 3 35 chr12 23338440 23338722 -120447733 + AluSg1 SINE Alu 36 308 -1 231 303 13 33 chr12 23339336 23339488 -120446967 + GA-rich Low_complexity Low_complexity 1 149 0 188 353 88 0 chr12 23339738 23339840 -120446615 + L2 LINE L2 2916 3026 -246 2803 126 6 78 chr12 23339897 23340447 -120446008 - L1MA4A LINE L1 0 6303 5794 953 188 30 25 chr12 23340650 23340871 -120445584 + AluJo SINE Alu 84 305 0 1315 196 84 43 chr12 23341363 23341709 -120444746 + MLT1A1 LTR MaLR 1 360 -5 228 211 0 44 chr12 23342371 23342461 -120443994 + GA-rich Low_complexity Low_complexity 4 89 0 1033 80 29 11 chr12 23342464 23342639 -120443816 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 552 193 14 7 chr12 23342641 23342781 -120443674 + GA-rich Low_complexity Low_complexity 2 142 0 180 310 16 8 chr12 23342786 23342915 -120443540 + A-rich Low_complexity Low_complexity 4 133 0 708 193 48 37 chr12 23343162 23343349 -120443106 - MER53 DNA DNA 0 189 1 225 239 159 74 chr12 23344296 23344459 -120441996 - L3b LINE CR1 -284 1299 1123 239 333 23 0 chr12 23344584 23344671 -120441784 + MIR SINE MIR 60 148 -114 201 74 0 0 chr12 23345053 23345080 -120441375 + (A)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr12 23345119 23345147 -120441308 + AT_rich Low_complexity Low_complexity 1 28 0 2268 102 0 7 chr12 23345456 23345759 -120440696 - AluSx SINE Alu -11 301 1 225 0 0 0 chr12 23345793 23345818 -120440637 + (A)n Simple_repeat Simple_repeat 1 25 0 1518 236 61 16 chr12 23347345 23347786 -120438669 + MLT1C LTR MaLR 7 467 0 684 303 25 33 chr12 23348200 23348444 -120438011 - MIR SINE MIR -19 243 2 364 272 11 0 chr12 23350435 23350527 -120435928 + Charlie8 DNA MER1_type 81 173 -2244 392 109 0 0 chr12 23350549 23350604 -120435851 - MLT2B1 LTR ERVL 0 464 410 195 42 0 0 chr12 23350606 23350630 -120435825 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 441 0 0 0 chr12 23350629 23350678 -120435777 + (CA)n Simple_repeat Simple_repeat 1 49 0 1573 129 0 0 chr12 23350683 23350907 -120435548 - MLT2B1 LTR ERVL -291 229 6 2629 147 60 11 chr12 23350910 23351379 -120435076 - ERVL-B1 LTR ERVL -5 5759 5268 540 206 237 0 chr12 23351527 23351658 -120434797 + MIR SINE MIR 45 206 -56 22 35 0 0 chr12 23352503 23352532 -120433923 + AT_rich Low_complexity Low_complexity 1 29 0 303 49 0 0 chr12 23352891 23352932 -120433523 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 378 186 12 35 chr12 23353708 23353794 -120432661 + L2 LINE L2 2986 3069 -203 1942 270 75 65 chr12 23354251 23354327 -120432128 - L2 LINE L2 -2292 1022 948 2113 113 0 0 chr12 23354327 23354602 -120431853 + AluSg SINE Alu 1 275 -35 1942 270 75 65 chr12 23354602 23354866 -120431589 - L2 LINE L2 -2366 948 688 1970 161 0 3 chr12 23354866 23355176 -120431279 + AluJo SINE Alu 4 312 0 1942 270 75 65 chr12 23355176 23355785 -120430670 - L2 LINE L2 -2626 688 63 311 293 121 9 chr12 23356359 23356475 -120429980 + L2 LINE L2 2941 3069 -244 2114 158 42 49 chr12 23356500 23356880 -120429575 + MSTB LTR MaLR 1 379 -47 1611 152 64 72 chr12 23356880 23357255 -120429200 - THE1C LTR MaLR -3 372 1 2114 158 42 49 chr12 23357255 23357303 -120429152 + MSTB LTR MaLR 379 426 0 269 302 88 50 chr12 23357890 23358049 -120428406 + L2 LINE L2 3149 3313 0 242 317 297 0 chr12 23358832 23358933 -120427522 - L2 LINE L2 -4 3268 3138 2831 188 5 6 chr12 23359426 23360071 -120426384 - L1P5 LINE L1 -1097 5049 4406 3383 134 16 3 chr12 23360089 23360807 -120425648 + L1P5 LINE L1 5068 5792 -359 192 77 0 0 chr12 23360807 23360833 -120425622 + (TA)n Simple_repeat Simple_repeat 2 27 0 333 261 11 11 chr12 23360833 23360925 -120425530 - L1MC4 LINE L1 -1339 6703 6612 501 113 71 0 chr12 23360962 23361130 -120425325 + (TA)n Simple_repeat Simple_repeat 1 180 0 547 104 67 0 chr12 23361150 23361314 -120425141 + (TA)n Simple_repeat Simple_repeat 1 175 0 480 103 48 24 chr12 23361334 23361499 -120424956 + (TA)n Simple_repeat Simple_repeat 2 170 0 2369 85 0 0 chr12 23361593 23361923 -120424532 + L1PB1 LINE L1 5784 6113 -38 242 217 0 0 chr12 23362153 23362213 -120424242 + A-rich Low_complexity Low_complexity 1 60 0 1816 223 56 16 chr12 23362334 23362778 -120423677 + LTR40b LTR ERVL 1 462 0 1350 194 46 55 chr12 23363190 23363227 -120423228 + MLT1D LTR MaLR 1 37 -468 1778 202 11 30 chr12 23363227 23363593 -120422862 + MLT1A1 LTR MaLR 5 363 -2 1350 194 46 55 chr12 23363593 23363808 -120422647 + MLT1D LTR MaLR 37 252 -253 447 35 0 0 chr12 23363808 23363865 -120422590 + (GA)n Simple_repeat Simple_repeat 2 58 0 1350 194 46 55 chr12 23363865 23363956 -120422499 + MLT1D LTR MaLR 252 342 -163 1540 150 0 37 chr12 23363956 23364256 -120422199 - L1PA13 LINE L1 -1286 4860 4572 6538 83 3 1 chr12 23364257 23365554 -120420901 + L1PA13 LINE L1 4857 6162 -1 381 141 206 43 chr12 23365554 23365646 -120420809 + MLT1D LTR MaLR 327 433 -72 189 250 206 0 chr12 23365832 23365924 -120420531 - L2 LINE L2 -1880 1434 1324 181 200 44 22 chr12 23366916 23366961 -120419494 - L2 LINE L2 -29 3284 3239 2350 100 0 0 chr12 23367217 23367518 -120418937 - AluSx SINE Alu -11 301 1 191 30 0 61 chr12 23367529 23367562 -120418893 + (TTTTTA)n Simple_repeat Simple_repeat 6 36 0 1923 59 0 0 chr12 23367566 23367805 -120418650 - L1PA5 LINE L1 -11 6143 5905 217 257 129 0 chr12 23369253 23369323 -120417132 + L2 LINE L2 3230 3308 -5 308 254 85 46 chr12 23369799 23369929 -120416526 + L2 LINE L2 3178 3312 -1 446 296 79 33 chr12 23370905 23371145 -120415310 + MIR SINE MIR 12 262 0 2393 199 20 61 chr12 23371326 23371981 -120414474 - L1ME1 LINE L1 -5 6161 5534 1489 195 27 7 chr12 23372558 23372850 -120413605 - AluJo SINE Alu -14 298 1 586 322 89 0 chr12 23373524 23373738 -120412717 - MIR SINE MIR -8 254 22 2014 168 37 0 chr12 23373949 23374301 -120412154 + MLT1A1 LTR MaLR 1 365 0 381 294 42 8 chr12 23377160 23377279 -120409176 - L2 LINE L2 -1 3271 3149 2396 197 4 17 chr12 23377489 23378006 -120408449 + L1MB7 LINE L1 5540 6049 -135 2270 190 104 59 chr12 23378006 23378753 -120407702 - LTR1B LTR ERV1 0 826 46 574 163 8 39 chr12 23378788 23378917 -120407538 + L1MB7 LINE L1 6052 6176 -8 2333 91 0 3 chr12 23379086 23379383 -120407072 + AluSq SINE Alu 1 296 -17 492 244 360 0 chr12 23379882 23380054 -120406401 + MIR SINE MIR 19 252 -10 204 216 0 0 chr12 23380085 23380136 -120406319 + (TAG)n Simple_repeat Simple_repeat 1 51 0 1854 118 4 0 chr12 23380349 23380595 -120405860 + AluSx SINE Alu 2 248 -64 22 0 0 0 chr12 23380595 23380617 -120405838 + AT_rich Low_complexity Low_complexity 1 22 0 243 175 70 0 chr12 23380880 23380937 -120405518 + LTR58 LTR ERV1 359 419 -260 226 293 64 42 chr12 23381455 23381660 -120404795 - MIR SINE MIR -37 225 46 255 322 34 62 chr12 23381960 23382106 -120404349 - L2 LINE L2 -1 3312 3171 180 0 0 0 chr12 23384506 23384526 -120401929 + (A)n Simple_repeat Simple_repeat 1 20 0 215 420 23 0 chr12 23388448 23388536 -120397919 - L2 LINE L2 -54 3218 3129 190 186 0 34 chr12 23389239 23389298 -120397157 + GA-rich Low_complexity Low_complexity 4 60 0 361 172 0 0 chr12 23389556 23389614 -120396841 - L2 LINE L2 0 3313 3256 607 174 78 30 chr12 23389919 23390086 -120396369 + MER5B DNA MER1_type 2 176 -2 324 102 0 0 chr12 23391481 23391530 -120394925 + (CA)n Simple_repeat Simple_repeat 1 49 0 2042 103 0 0 chr12 23391818 23392080 -120394375 - AluSc SINE Alu -8 301 40 670 242 38 16 chr12 23392195 23392381 -120394074 - MER91B DNA MER1_type 0 190 1 224 119 0 24 chr12 23392501 23392543 -120393912 + (TA)n Simple_repeat Simple_repeat 2 42 0 188 337 23 0 chr12 23392957 23393043 -120393412 + MIR SINE MIR 54 141 -67 247 297 55 0 chr12 23394226 23394317 -120392138 - MLT1H LTR MaLR 0 549 454 342 283 17 8 chr12 23394369 23394489 -120391966 - LTR28 LTR ERV1 0 1020 900 1079 211 201 59 chr12 23394529 23395226 -120391229 - LTR1B LTR ERV1 -37 983 19 254 214 18 0 chr12 23395220 23395276 -120391179 - LTR28 LTR ERV1 -963 57 1 * 992 269 70 30 chr12 23395289 23395620 -120390835 - MLT1H LTR MaLR -198 351 8 458 287 111 55 chr12 23396962 23397366 -120389089 + MLT1H LTR MaLR 123 549 0 195 42 0 0 chr12 23397502 23397526 -120388929 + (CAATT)n Simple_repeat Simple_repeat 5 28 0 26 0 0 0 chr12 23397993 23398019 -120388436 + AT_rich Low_complexity Low_complexity 1 26 0 838 129 50 14 chr12 23398754 23398932 -120387523 - AluJb SINE Alu 0 350 168 22 80 0 0 chr12 23400463 23400513 -120385942 + AT_rich Low_complexity Low_complexity 1 50 0 183 42 0 0 chr12 23402146 23402170 -120384285 + (A)n Simple_repeat Simple_repeat 1 24 0 1335 266 104 34 chr12 23402505 23402834 -120383621 + HAL1 LINE L1 811 1116 -1391 192 77 0 0 chr12 23402834 23402860 -120383595 + (CA)n Simple_repeat Simple_repeat 2 27 0 1335 266 104 34 chr12 23402860 23403373 -120383082 + HAL1 LINE L1 1116 1712 -795 1590 126 19 48 chr12 23403704 23403973 -120382482 + MER1B DNA MER1_type 79 339 0 184 111 44 0 chr12 23404096 23404141 -120382314 + (TA)n Simple_repeat Simple_repeat 2 48 0 380 290 77 73 chr12 23404498 23404757 -120381698 + HAL1 LINE L1 2245 2504 -3 24 0 0 0 chr12 23404765 23404789 -120381666 + AT_rich Low_complexity Low_complexity 1 24 0 322 328 136 11 chr12 23404868 23405045 -120381410 - MIR SINE MIR -1 261 63 211 303 0 30 chr12 23405080 23405146 -120381309 + MIR3 SINE MIR 139 202 -6 222 37 0 0 chr12 23405860 23405887 -120380568 + (TG)n Simple_repeat Simple_repeat 1 27 0 325 314 34 8 chr12 23406332 23406450 -120380005 - MIR SINE MIR -20 242 122 739 234 104 9 chr12 23406664 23406886 -120379569 - MIR SINE MIR 0 262 20 541 251 73 90 chr12 23406893 23407441 -120379014 - MLT1G LTR MaLR -9 558 18 442 259 80 19 chr12 23407788 23407950 -120378505 + MIR SINE MIR 49 220 -42 196 346 125 0 chr12 23407993 23408097 -120378358 + L2 LINE L2 3121 3237 -35 23 54 0 0 chr12 23408237 23408274 -120378181 + AT_rich Low_complexity Low_complexity 1 37 0 623 296 128 32 chr12 23408484 23408889 -120377566 - L2 LINE L2 -19 3294 2851 212 360 112 12 chr12 23411370 23411531 -120374924 - L2 LINE L2 -4 3268 3092 253 327 26 18 chr12 23414527 23414640 -120371815 - MIR SINE MIR -69 139 26 249 264 0 0 chr12 23414993 23415046 -120371409 + GA-rich Low_complexity Low_complexity 2 54 0 240 35 0 0 chr12 23415961 23415990 -120370465 + (TG)n Simple_repeat Simple_repeat 2 30 0 730 294 71 14 chr12 23416287 23416709 -120369746 + L1MEc LINE L1 1435 1880 -4516 293 208 66 28 chr12 23416757 23416863 -120369592 + L1ME3 LINE L1 6033 6142 -20 411 273 76 52 chr12 23416899 23417233 -120369222 + L1MEc LINE L1 2321 2645 -3570 2127 109 7 26 chr12 23417233 23417537 -120368918 + AluSp SINE Alu 1 298 -15 411 273 76 52 chr12 23417537 23417607 -120368848 + L1MEc LINE L1 2645 2712 -3503 2248 138 13 16 chr12 23417607 23417983 -120368472 - THE1C LTR MaLR 0 375 1 411 273 76 52 chr12 23417983 23418076 -120368379 + L1MEc LINE L1 2712 2831 -3384 1375 281 60 88 chr12 23418205 23419059 -120367396 - L2 LINE L2 -1530 1784 955 314 333 20 10 chr12 23419283 23419385 -120367070 + L2 LINE L2 3170 3272 0 218 292 36 27 chr12 23419378 23419513 -120366942 - MIR SINE MIR -68 140 19 * 521 187 32 144 chr12 23419714 23419998 -120366457 + MER112 DNA MER1_type 4 255 -1 432 341 0 0 chr12 23420223 23420349 -120366106 - MIR SINE MIR -62 146 21 2206 74 0 11 chr12 23421830 23422180 -120364275 - AluY SINE Alu 0 347 1 2157 139 0 0 chr12 23422310 23422661 -120363794 - AluSx SINE Alu 0 360 10 1873 173 0 13 chr12 23422663 23422970 -120363485 - AluJb SINE Alu -9 303 1 442 298 60 37 chr12 23423117 23423335 -120363120 + MLT1K LTR MaLR 201 423 -165 236 111 0 22 chr12 23423447 23423492 -120362963 + L1MA8 LINE L1 5785 5828 -506 910 126 14 21 chr12 23423492 23423635 -120362820 + AluSc SINE Alu 165 306 -3 510 182 10 0 chr12 23423635 23423734 -120362721 + L1MA8 LINE L1 5828 5927 -364 992 165 156 31 chr12 23423735 23424088 -120362367 - MSTC LTR MaLR 0 428 1 4046 234 82 90 chr12 23424088 23425634 -120360821 - MSTC-int LTR MaLR 0 1735 203 2147 115 0 20 chr12 23425912 23426216 -120360239 + AluSx SINE Alu 5 302 -10 1049 267 16 0 chr12 23426789 23427100 -120359355 + L1ME LINE L1 5457 5772 -390 1303 328 46 12 chr12 23427100 23427840 -120358615 + L1M3a LINE L1 529 1270 -5033 2272 117 81 5 chr12 23427840 23428233 -120358222 - MSTA LTR MaLR 0 428 6 1848 249 48 22 chr12 23428239 23429145 -120357310 + L1M3a LINE L1 905 1796 -4588 415 183 12 0 chr12 23429333 23429415 -120357040 + Tigger7 DNA MER2_type 235 317 -233 * 835 158 49 6 chr12 23429411 23429575 -120356880 + Tigger7 DNA MER2_type 2398 2568 -19 325 111 0 0 chr12 23429593 23429647 -120356808 + L1ME LINE L1 5757 5810 -360 287 196 0 0 chr12 23429647 23429703 -120356752 + MLT2B3 LTR ERVL 499 554 0 180 258 129 0 chr12 23429735 23429797 -120356658 - MIR SINE MIR -118 144 75 621 204 186 0 chr12 23430464 23430632 -120355823 - MIR SINE MIR -3 259 61 415 326 89 0 chr12 23430659 23430849 -120355606 - MIR SINE MIR -22 240 34 22 35 0 0 chr12 23431201 23431230 -120355225 + AT_rich Low_complexity Low_complexity 1 29 0 1169 274 86 25 chr12 23431352 23431900 -120354555 + L1MC4a LINE L1 5334 5914 -1894 562 51 0 0 chr12 23432079 23432157 -120354298 - L1MA9 LINE L1 0 6312 6235 189 74 0 0 chr12 23432218 23432245 -120354210 + (TTAAA)n Simple_repeat Simple_repeat 2 28 0 2294 142 17 0 chr12 23433102 23433461 -120352994 - MLT1A1 LTR MaLR 0 365 1 537 221 165 25 chr12 23433881 23434039 -120352416 + MER5A DNA MER1_type 10 189 0 460 338 55 14 chr12 23434039 23434256 -120352199 + MIR SINE MIR 17 242 -20 279 0 0 0 chr12 23434484 23434515 -120351940 + (TA)n Simple_repeat Simple_repeat 2 32 0 1078 173 0 0 chr12 23434516 23434695 -120351760 + AluSg/x SINE Alu 132 310 -2 2498 107 18 0 chr12 23435017 23435400 -120351055 + MER83 LTR ERV1 1 390 -58 247 107 89 0 chr12 23435425 23435481 -120350974 - MER83C LTR ERV1 -43 330 270 297 239 15 0 chr12 23435497 23435564 -120350891 + MER83 LTR ERV1 381 448 0 2354 102 3 0 chr12 23436431 23436736 -120349719 + AluSx SINE Alu 1 306 -6 2142 85 3 3 chr12 23436945 23437252 -120349203 - AluSg SINE Alu 0 307 1 568 276 82 24 chr12 23437309 23437761 -120348694 + L1M4 LINE L1 2684 3161 -2985 319 259 83 19 chr12 23437814 23437922 -120348533 + L1M4 LINE L1 3161 3275 -2871 6128 177 74 19 chr12 23438543 23439851 -120346604 + MER52A LTR ERV1 3 1498 -257 475 171 0 0 chr12 23439848 23439930 -120346525 + MER52A LTR ERV1 1674 1755 0 * 203 373 51 0 chr12 23439933 23440051 -120346404 + L2 LINE L2 2410 2533 -781 3444 177 54 30 chr12 23440105 23440906 -120345549 + L1MB4 LINE L1 5353 6172 -8 387 278 4 23 chr12 23440926 23441176 -120345279 + L1MC4a LINE L1 5443 5768 -2040 2192 234 12 30 chr12 23441182 23441456 -120344999 - MER119 DNA MER1_type -4 579 319 1815 5 0 0 chr12 23441456 23441651 -120344804 - AluYa5 SINE Alu -8 303 109 2192 234 12 30 chr12 23441651 23441936 -120344519 - MER119 DNA MER1_type -264 319 30 366 294 106 24 chr12 23441946 23442116 -120344339 + L1MC4a LINE L1 5778 5961 -1847 22 35 0 0 chr12 23442270 23442299 -120344156 + AT_rich Low_complexity Low_complexity 1 29 0 384 358 59 38 chr12 23442382 23442723 -120343732 + L1MC4a LINE L1 6284 6631 -1177 1252 330 41 41 chr12 23442796 23443695 -120342760 - HERV16 LTR ERVL -3736 1260 362 21 0 0 0 chr12 23443783 23443804 -120342651 + AT_rich Low_complexity Low_complexity 1 21 0 1194 256 111 23 chr12 23444007 23444394 -120342061 - LTR16C LTR ERVL 0 491 71 320 316 0 11 chr12 23444831 23444926 -120341529 - L2 LINE L2 0 3272 3179 23 0 0 0 chr12 23445628 23445651 -120340804 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr12 23445702 23445735 -120340720 + AT_rich Low_complexity Low_complexity 1 33 0 1390 81 0 0 chr12 23446790 23446975 -120339480 - AluYa5 SINE Alu 0 311 127 938 180 20 0 chr12 23447144 23447294 -120339161 + FRAM SINE Alu 1 153 -13 1298 260 125 8 chr12 23447463 23447943 -120338512 - Charlie7 DNA MER1_type -1927 685 150 710 237 104 14 chr12 23447948 23448311 -120338144 - HsTC2 DNA Tc2 -3 1895 1288 1815 170 23 23 chr12 23448992 23449334 -120337121 + MER2 DNA MER2_type 2 343 -1 498 33 0 0 chr12 23449336 23449396 -120337059 - AluSp/q SINE Alu -18 295 236 843 58 0 0 chr12 23449893 23449996 -120336459 - AluY SINE Alu -208 103 1 32 121 0 0 chr12 23450651 23450858 -120335597 + AT_rich Low_complexity Low_complexity 1 207 0 4512 118 210 5 chr12 23450873 23451760 -120334695 - L1PBa LINE L1 -5183 1680 612 813 168 70 0 chr12 23451738 23451923 -120334532 - L1PBa LINE L1 -6663 200 3 * 432 0 0 0 chr12 23452201 23452249 -120334206 + (TG)n Simple_repeat Simple_repeat 2 49 0 546 328 68 4 chr12 23452655 23452890 -120333565 + MIR SINE MIR 1 250 -12 503 183 11 103 chr12 23452999 23453174 -120333281 - MLT2C1 LTR ERVL -41 356 198 2347 103 0 3 chr12 23453177 23453488 -120332967 - AluSx SINE Alu -2 310 1 7857 121 38 46 chr12 23453614 23455008 -120331447 - THE1-int LTR MaLR -197 1383 1 436 296 62 22 chr12 23455901 23456026 -120330429 - MIR SINE MIR -6 256 120 2307 123 0 0 chr12 23456026 23456335 -120330120 + AluSx SINE Alu 1 309 -3 436 296 62 22 chr12 23456335 23456388 -120330067 - MIR SINE MIR -142 120 71 1429 174 127 62 chr12 23456590 23456975 -120329480 - MLT2D LTR ERVL 0 414 5 211 217 0 0 chr12 23457175 23457221 -120329234 + (AATTG)n Simple_repeat Simple_repeat 3 48 0 295 154 0 0 chr12 23457355 23457407 -120329048 - MLT1E3 LTR MaLR 0 624 573 507 216 99 12 chr12 23457517 23457679 -120328776 + L1M4 LINE L1 2522 2697 -3449 3942 223 47 8 chr12 23457681 23458642 -120327813 - ERVL-D LTR ERVL -257 5507 4510 6489 33 5 0 chr12 23458647 23460001 -120326454 + L1PA4 LINE L1 4717 6074 -81 696 317 21 12 chr12 23460482 23460725 -120325730 - L2 LINE L2 -256 3057 2813 271 211 0 0 chr12 23460751 23460803 -120325652 - MLT1F LTR MaLR 0 549 498 2020 133 18 0 chr12 23460826 23461157 -120325298 - L1PA16 LINE L1 -22 6144 5808 1538 262 70 13 chr12 23461178 23461632 -120324823 - MLT1F LTR MaLR -59 483 4 463 298 9 0 chr12 23461635 23461749 -120324706 - L2 LINE L2 -519 2795 2681 25 0 0 0 chr12 23462081 23462106 -120324349 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr12 23462113 23462134 -120324321 + AT_rich Low_complexity Low_complexity 1 21 0 546 114 17 34 chr12 23462134 23462310 -120324145 + (TTATA)n Simple_repeat Simple_repeat 2 174 0 * 572 54 84 12 chr12 23462271 23462438 -120324017 + (TA)n Simple_repeat Simple_repeat 2 180 0 1992 148 0 3 chr12 23462438 23462735 -120323720 + AluJb SINE Alu 1 296 -16 5638 266 144 21 chr12 23463012 23465174 -120321281 - L2 LINE L2 -653 2661 233 23 0 0 0 chr12 23468135 23468158 -120318297 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr12 23469122 23469157 -120317298 + AT_rich Low_complexity Low_complexity 1 35 0 702 228 16 65 chr12 23469224 23469275 -120317180 - MER5A DNA MER1_type -14 175 123 1845 129 46 0 chr12 23469275 23469555 -120316900 + AluJo SINE Alu 1 293 -19 702 228 16 65 chr12 23469555 23469687 -120316768 - MER5A DNA MER1_type -66 123 1 1412 267 106 61 chr12 23469694 23469899 -120316556 + L2 LINE L2 2048 2242 -1071 1622 129 146 7 chr12 23469899 23470193 -120316262 - MER44D DNA MER2_type -4 605 1 1412 267 106 61 chr12 23470193 23471174 -120315281 + L2 LINE L2 2242 3313 0 23 68 0 0 chr12 23473694 23473738 -120312717 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr12 23474931 23474952 -120311503 + AT_rich Low_complexity Low_complexity 1 21 0 991 85 17 26 chr12 23475188 23475424 -120311031 + (GAAA)n Simple_repeat Simple_repeat 1 234 0 1234 250 85 26 chr12 23475563 23475860 -120310595 - MLT1E LTR MaLR -182 411 84 4979 156 99 39 chr12 23475860 23476822 -120309633 + LTR28 LTR ERV1 1 1020 0 1234 250 85 26 chr12 23476822 23476912 -120309543 - MLT1E LTR MaLR -509 84 1 216 271 12 24 chr12 23477917 23478002 -120308453 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 194 328 0 0 chr12 23478057 23478115 -120308340 - MIR SINE MIR -100 108 51 23 33 0 0 chr12 23478963 23478993 -120307462 + AT_rich Low_complexity Low_complexity 1 30 0 5298 93 26 7 chr12 23479064 23479870 -120306585 - L1PA8 LINE L1 0 6172 5352 530 254 73 30 chr12 23480027 23480259 -120306196 - MER112 DNA MER1_type -6 254 13 2054 136 0 10 chr12 23480264 23480566 -120305889 + AluSx SINE Alu 1 299 -13 446 120 0 0 chr12 23480940 23481015 -120305440 + L1PBa LINE L1 3 77 -6786 250 272 54 11 chr12 23481389 23481481 -120304974 - MIR3 SINE MIR -5 203 108 527 218 17 6 chr12 23483302 23483476 -120302979 + GA-rich Low_complexity Low_complexity 1 176 0 * 774 128 0 45 chr12 23483450 23483629 -120302826 + (GGAA)n Simple_repeat Simple_repeat 2 172 0 368 234 66 32 chr12 23484075 23484242 -120302213 + LTR28 LTR ERV1 1 139 -286 * 428 216 216 28 chr12 23484209 23484390 -120302065 + LTR1 LTR ERV1 110 231 -554 1410 209 96 44 chr12 23484405 23484991 -120301464 + LTR28 LTR ERV1 357 1020 0 188 320 0 0 chr12 23485414 23485464 -120300991 - MIR3 SINE MIR -27 181 132 724 254 56 5 chr12 23485812 23486025 -120300430 - MER58A DNA MER1_type 0 224 1 887 184 65 30 chr12 23486135 23486336 -120300119 + MER3 DNA MER1_type 1 208 -1 305 366 101 18 chr12 23486806 23487167 -120299288 - L2 LINE L2 -217 3055 2659 727 254 19 93 chr12 23487302 23487668 -120298787 + MER102b DNA MER1_type 1 339 -2 549 278 0 0 chr12 23489268 23489580 -120296875 + FLAM_A SINE Alu 1 312 0 310 120 30 70 chr12 23489565 23489665 -120296790 + GA-rich Low_complexity Low_complexity 4 99 0 1999 141 59 5 chr12 23490623 23491013 -120295442 - L1MB4 LINE L1 -35 6145 5735 2308 146 13 15 chr12 23491186 23491577 -120294878 + MLT1B LTR MaLR 1 390 0 689 293 26 89 chr12 23491713 23492139 -120294316 - L2 LINE L2 -72 3241 2843 418 205 0 0 chr12 23492139 23492222 -120294233 + AluJ/FLAM SINE Alu 1 83 -229 862 147 0 51 chr12 23492222 23492379 -120294076 + AluJo/FRAM SINE Alu 162 310 -2 580 122 0 19 chr12 23492381 23492488 -120293967 + (GGA)n Simple_repeat Simple_repeat 3 107 0 2137 260 62 39 chr12 23492488 23492774 -120293681 - L2 LINE L2 -410 2904 2626 2129 132 0 0 chr12 23492774 23493069 -120293386 + AluSx SINE Alu 1 295 -17 2137 260 62 39 chr12 23493069 23493558 -120292897 - L2 LINE L2 -688 2626 2111 1002 318 42 58 chr12 23494014 23494659 -120291796 - L2 LINE L2 -212 3060 2433 242 276 113 63 chr12 23494651 23494890 -120291565 - MIR3 SINE MIR -5 257 2 * 21 0 0 0 chr12 23495159 23495180 -120291275 + AT_rich Low_complexity Low_complexity 1 21 0 339 345 28 49 chr12 23495469 23495611 -120290844 + L2 LINE L2 3134 3272 0 747 215 129 39 chr12 23495873 23496129 -120290326 + L2 LINE L2 3035 3313 0 313 299 7 66 chr12 23496165 23496302 -120290153 - MIR SINE MIR -112 150 22 291 260 45 104 chr12 23496689 23496843 -120289612 + MER5A DNA MER1_type 33 188 -1 238 336 25 25 chr12 23497310 23497432 -120289023 + MIR SINE MIR 140 261 -1 22 56 0 0 chr12 23497521 23497557 -120288898 + AT_rich Low_complexity Low_complexity 1 36 0 2069 118 6 13 chr12 23497606 23497919 -120288536 - AluSx SINE Alu -1 311 1 432 288 46 13 chr12 23498948 23499101 -120287354 - LTR67 LTR ERVL 0 557 400 2072 134 0 0 chr12 23499684 23500034 -120286421 + AluSx SINE Alu 1 350 0 3891 152 107 5 chr12 23500879 23501629 -120284826 + LTR1B LTR ERV1 1 826 0 394 288 57 57 chr12 23502050 23502227 -120284228 + MER5B DNA MER1_type 1 177 -1 192 342 88 18 chr12 23503286 23503400 -120283055 - L2 LINE L2 -18 3254 3133 208 402 122 5 chr12 23503807 23504021 -120282434 + MIR SINE MIR 20 258 -4 297 109 0 0 chr12 23504775 23504821 -120281634 + (TC)n Simple_repeat Simple_repeat 2 47 0 343 264 23 0 chr12 23504833 23504920 -120281535 - L1MC4 LINE L1 -1339 6703 6615 319 322 0 0 chr12 23504861 23504951 -120281504 + L1MC4 LINE L1 6614 6703 -1339 * 255 125 0 0 chr12 23505422 23505462 -120280993 + (A)n Simple_repeat Simple_repeat 1 40 0 24 0 0 0 chr12 23505543 23505567 -120280888 + AT_rich Low_complexity Low_complexity 1 24 0 207 161 0 0 chr12 23506116 23506172 -120280283 + A-rich Low_complexity Low_complexity 1 56 0 581 290 30 6 chr12 23506730 23506899 -120279556 + L3 LINE CR1 308 480 -1097 326 224 82 45 chr12 23506973 23507107 -120279348 + MER103 DNA DNA 12 150 -16 1261 343 126 33 chr12 23507192 23508123 -120278332 + L3 LINE CR1 491 1333 -244 1255 253 70 42 chr12 23508123 23508398 -120278057 + LTR47B LTR ERVL 1 267 -176 2324 85 7 0 chr12 23508398 23508704 -120277751 + AluY SINE Alu 1 308 -3 276 30 0 0 chr12 23508704 23508737 -120277718 + (TA)n Simple_repeat Simple_repeat 1 33 0 1255 253 70 42 chr12 23508737 23508891 -120277564 + LTR47B LTR ERVL 266 443 0 1261 343 126 33 chr12 23508891 23508941 -120277514 + L3 LINE CR1 1333 1564 -13 427 235 49 37 chr12 23509659 23509821 -120276634 - MIR SINE MIR 0 262 99 610 247 29 50 chr12 23509905 23510175 -120276280 + L1ME LINE L1 5476 5732 -389 1811 174 0 7 chr12 23510530 23510840 -120275615 - AluSx SINE Alu -2 310 3 314 341 79 47 chr12 23510955 23511504 -120274951 - L2 LINE L2 -40 3232 2658 269 322 11 0 chr12 23512194 23512281 -120274174 + MIR3 SINE MIR 111 198 -10 1725 199 67 12 chr12 23512294 23512710 -120273745 - MER41B LTR ERV1 0 635 197 2118 251 36 9 chr12 23513060 23513610 -120272845 + MLT1F1 LTR MaLR 3 567 0 203 260 40 13 chr12 23514610 23514760 -120271695 + (TA)n Simple_repeat Simple_repeat 1 154 0 316 296 0 0 chr12 23514937 23515025 -120271430 - L3 LINE CR1 -156 1421 1334 188 178 260 27 chr12 23515044 23515117 -120271338 - L2 LINE L2 -47 3225 3136 991 298 100 7 chr12 23515565 23515995 -120270460 + LTR33 LTR ERVL 51 520 -1 314 283 89 45 chr12 23516460 23516966 -120269489 - L1 LINE L1 -1557 4589 4062 762 258 36 32 chr12 23517520 23517710 -120268745 + MER58A DNA MER1_type 1 194 -2226 1915 162 11 40 chr12 23517710 23518086 -120268369 + MLT1A1 LTR MaLR 1 365 0 762 258 36 32 chr12 23518086 23518116 -120268339 + MER58A DNA MER1_type 194 222 -2 263 239 34 11 chr12 23518189 23518277 -120268178 + MER103 DNA DNA 1 90 -76 30 27 0 0 chr12 23518355 23518392 -120268063 + AT_rich Low_complexity Low_complexity 1 37 0 313 191 0 0 chr12 23519066 23519129 -120267326 - AluSp/q SINE Alu -8 295 233 2429 219 25 7 chr12 23522082 23522635 -120263820 + MER90 LTR ERV1 1 604 -10 717 193 0 0 chr12 23523429 23523548 -120262907 + FLAM_C SINE Alu 1 119 -14 584 241 57 30 chr12 23524059 23524324 -120262131 + LTR37B LTR ERV1 197 468 0 1777 194 0 0 chr12 23524330 23524629 -120261826 - AluJb SINE Alu -13 299 1 312 275 0 62 chr12 23525338 23525498 -120260957 + MER31-int LTR ERV1 1147 1296 -3640 2495 164 45 4 chr12 23526549 23527493 -120258962 + L1P5 LINE L1 4762 5726 -430 1319 157 10 0 chr12 23527610 23527814 -120258641 + AluSx SINE Alu 12 217 -95 403 211 105 0 chr12 23527872 23527967 -120258488 + AluSg/x SINE Alu 187 291 -21 353 314 217 16 chr12 23528125 23528253 -120258202 - L1MEd LINE L1 -3561 2568 2467 225 0 0 0 chr12 23528253 23528278 -120258177 + (TG)n Simple_repeat Simple_repeat 2 26 0 353 314 217 16 chr12 23528278 23528407 -120258048 - L1MEd LINE L1 -3662 2467 2259 23 33 0 0 chr12 23528426 23528456 -120257999 + AT_rich Low_complexity Low_complexity 1 30 0 876 215 45 47 chr12 23528711 23528996 -120257459 - MLT1B LTR MaLR 0 390 161 2379 99 0 0 chr12 23528996 23529300 -120257155 - AluSx SINE Alu -8 304 1 876 215 45 47 chr12 23529300 23529458 -120256997 - MLT1B LTR MaLR -229 161 4 498 332 130 0 chr12 23529803 23530011 -120256444 + MIR SINE MIR 26 260 -2 432 271 78 0 chr12 23530030 23530196 -120256259 - HAL1 LINE L1 -927 1580 1402 2211 155 9 60 chr12 23530269 23530655 -120255800 + MSTC LTR MaLR 1 362 -66 3344 104 0 4 chr12 23530655 23531135 -120255320 - L1PA14 LINE L1 -4 6157 5680 2211 155 9 60 chr12 23531135 23531199 -120255256 + MSTC LTR MaLR 362 428 0 543 317 79 52 chr12 23531199 23531619 -120254836 - L1MEd LINE L1 -4902 1217 787 2151 82 7 53 chr12 23531731 23532034 -120254421 + AluSp SINE Alu 1 289 -24 474 133 0 0 chr12 23532034 23532109 -120254346 + AluSp/q SINE Alu 227 301 -12 297 0 0 0 chr12 23532607 23532640 -120253815 + (CA)n Simple_repeat Simple_repeat 1 33 0 1636 59 0 15 chr12 23532648 23532851 -120253604 - AluSc SINE Alu -16 293 94 1728 140 80 3 chr12 23532856 23533142 -120253313 - AluSx SINE Alu -4 308 1 2355 237 36 6 chr12 23533825 23534373 -120252082 - MLT1F1 LTR MaLR 0 567 3 430 130 13 0 chr12 23534619 23534696 -120251759 + LTR37B LTR ERV1 9 86 -382 1384 183 8 0 chr12 23534700 23534941 -120251514 + Charlie3 DNA MER1_type 3 245 -2465 326 196 0 0 chr12 23534982 23535038 -120251417 + Charlie3 DNA MER1_type 2640 2695 -15 2114 179 0 33 chr12 23535151 23535581 -120250874 + L1PA16 LINE L1 5750 6165 -1 417 222 20 20 chr12 23535854 23536007 -120250448 + L1MDa LINE L1 1396 1548 -4992 737 232 43 5 chr12 23536202 23536409 -120250046 + LTR37B LTR ERV1 1 215 -253 22 70 0 0 chr12 23536445 23536488 -120249967 + AT_rich Low_complexity Low_complexity 1 43 0 205 306 188 12 chr12 23537889 23537974 -120248481 + L2 LINE L2 3146 3245 -27 340 214 0 0 chr12 23538227 23538283 -120248172 - MER5A DNA MER1_type -130 59 4 189 0 0 0 chr12 23538496 23538517 -120247938 + (A)n Simple_repeat Simple_repeat 1 21 0 2180 128 0 0 chr12 23539589 23539901 -120246554 + AluSx SINE Alu 1 312 0 872 165 6 6 chr12 23540217 23540375 -120246080 + MER93b LTR ERV1 5 162 -211 1207 172 92 164 chr12 23540814 23541160 -120245295 - L1MC4a LINE L1 -600 7208 6838 2868 164 59 24 chr12 23541160 23541239 -120245216 + LTR9 LTR ERV1 1 76 -536 2083 132 3 10 chr12 23541239 23541542 -120244913 + AluSx SINE Alu 11 311 -1 2868 164 59 24 chr12 23541542 23542053 -120244402 + LTR9 LTR ERV1 76 612 0 1207 172 92 164 chr12 23542053 23542322 -120244133 - L1MC4a LINE L1 -970 6838 6724 2123 125 0 0 chr12 23542322 23542619 -120243836 - AluSc SINE Alu -12 297 1 1207 172 92 164 chr12 23542619 23542691 -120243764 - L1MC4a LINE L1 -1084 6724 6648 428 261 126 0 chr12 23542722 23542921 -120243534 - L1MC4 LINE L1 -2 8040 7817 460 246 103 27 chr12 23542924 23543148 -120243307 - L1MDa LINE L1 -4712 1828 1588 535 294 75 7 chr12 23543191 23543602 -120242853 - L1M4 LINE L1 -3594 2552 2114 22 35 0 0 chr12 23543971 23544000 -120242455 + AT_rich Low_complexity Low_complexity 1 29 0 284 322 11 0 chr12 23545529 23545616 -120240839 + MIR3 SINE MIR 111 198 -10 3495 156 43 2 chr12 23545629 23546239 -120240216 - MER41B LTR ERV1 0 635 1 682 190 17 29 chr12 23546533 23546707 -120239748 + MLT1A2 LTR MaLR 5 176 -198 846 208 27 65 chr12 23546841 23547101 -120239354 + MLT1A2 LTR MaLR 117 366 -8 4217 42 12 32 chr12 23548011 23548580 -120237875 - LTR6B LTR ERV1 0 558 1 362 339 71 47 chr12 23548885 23549139 -120237316 - L1ME3 LINE L1 -258 5904 5645 561 186 0 0 chr12 23549199 23549296 -120237159 + Tigger3(Golem) DNA MER2_type 6 102 -2927 3789 136 61 3 chr12 23549299 23549999 -120236456 + Tigger3(Golem) DNA MER2_type 2287 3027 -2 435 264 92 22 chr12 23550001 23550228 -120236227 + ERVL LTR ERVL 155 397 -4599 * 1287 306 60 24 chr12 23550226 23550762 -120235693 + ERVL LTR ERVL 969 1523 -3473 1498 353 71 25 chr12 23551012 23552555 -120233900 + ERVL LTR ERVL 2656 4269 -1216 25 0 0 0 chr12 23553141 23553166 -120233289 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr12 23553453 23553475 -120232980 + (GGGTG)n Simple_repeat Simple_repeat 3 24 0 255 269 114 30 chr12 23554101 23554365 -120232090 - L1ME LINE L1 -299 5822 5537 2251 124 0 6 chr12 23554455 23554769 -120231686 - AluSx SINE Alu 0 312 1 518 343 77 33 chr12 23554882 23555607 -120230848 - L2 LINE L2 -40 3232 2472 926 70 0 0 chr12 23555926 23556040 -120230415 - AluSc SINE Alu -185 124 11 1260 112 0 0 chr12 23556040 23556210 -120230245 + AluSc SINE Alu 140 309 0 956 252 42 44 chr12 23556927 23557383 -120229072 - L1MC5 LINE L1 -106 7855 7401 391 319 190 0 chr12 23557777 23557940 -120228515 + MER91A DNA MER1_type 2 195 -1 243 320 75 65 chr12 23557980 23558600 -120227855 + L2 LINE L2 1856 2530 -784 410 266 115 14 chr12 23558613 23558752 -120227703 - L2 LINE L2 -40 3273 3121 182 335 74 56 chr12 23558812 23559096 -120227359 + L2 LINE L2 2625 2913 -401 591 285 65 14 chr12 23559418 23559632 -120226823 + MIR SINE MIR 23 247 -15 2159 122 23 0 chr12 23559859 23560162 -120226293 - AluSq SINE Alu -1 312 3 2770 0 0 3 chr12 23560206 23560506 -120225949 - AluYa5 SINE Alu -12 299 1 208 310 49 98 chr12 23562215 23562418 -120224037 + L2 LINE L2 2689 2881 -433 1523 183 84 113 chr12 23562444 23562899 -120223556 + MLT1E1 LTR MaLR 168 608 -46 756 175 0 0 chr12 23562899 23563019 -120223436 - FLAM_A SINE Alu -12 121 2 1523 183 84 113 chr12 23563019 23563065 -120223390 + MLT1E1 LTR MaLR 608 654 0 286 254 8 8 chr12 23563065 23563187 -120223268 + GA-rich Low_complexity Low_complexity 2 123 0 569 298 112 16 chr12 23563502 23564088 -120222367 - L1ME LINE L1 -817 5329 4645 429 291 30 19 chr12 23564259 23564527 -120221928 - L1ME LINE L1 -1499 4647 4377 1762 188 0 0 chr12 23564551 23564838 -120221617 - AluSx SINE Alu -25 287 1 619 131 0 0 chr12 23564897 23564996 -120221459 + L1PA13 LINE L1 6054 6152 -11 21 36 0 0 chr12 23564996 23565024 -120221431 + AT_rich Low_complexity Low_complexity 1 28 0 361 309 8 68 chr12 23565101 23565192 -120221263 - L1ME LINE L1 -1891 4255 4160 2297 103 3 0 chr12 23565192 23565493 -120220962 - AluSx SINE Alu -10 302 1 361 309 8 68 chr12 23565493 23565653 -120220802 - L1ME LINE L1 -1986 4160 4019 2359 67 0 0 chr12 23565927 23566247 -120220208 - AluY SINE Alu 0 320 1 189 94 0 0 chr12 23566410 23566442 -120220013 + (TG)n Simple_repeat Simple_repeat 2 33 0 203 204 0 23 chr12 23567298 23567342 -120219113 + T-rich Low_complexity Low_complexity 2 44 0 193 321 0 0 chr12 23569573 23569626 -120216829 + MER5A DNA MER1_type 62 114 -75 246 277 160 0 chr12 23570731 23570850 -120215605 + L3 LINE CR1 1186 1323 -254 241 353 209 23 chr12 23571077 23571558 -120214897 + L2 LINE L2 2656 3225 -47 294 307 0 0 chr12 23571577 23571665 -120214790 + L3 LINE CR1 1334 1421 -156 208 240 60 7 chr12 23571842 23571992 -120214463 + (TA)n Simple_repeat Simple_repeat 1 158 0 240 263 53 26 chr12 23572594 23572708 -120213747 - MLT1J LTR MaLR -44 467 351 703 201 35 30 chr12 23572722 23572891 -120213564 - MER5A DNA MER1_type -18 171 2 251 323 50 0 chr12 23572952 23573051 -120213404 - MLT1J1 LTR MaLR -284 162 59 722 216 77 0 chr12 23573081 23573289 -120213166 - L1ME1 LINE L1 -1600 4546 4323 679 209 96 23 chr12 23573300 23573477 -120212978 + L1ME1 LINE L1 4561 4750 -1396 1271 172 9 51 chr12 23573600 23573918 -120212537 + MLT1A2 LTR MaLR 4 374 0 2479 205 57 24 chr12 23573919 23575158 -120211297 + L1ME1 LINE L1 4771 6044 -122 288 329 95 7 chr12 23575419 23575556 -120210899 + L2 LINE L2 3165 3313 0 1925 138 30 0 chr12 23576683 23576981 -120209474 + AluJb SINE Alu 1 307 -5 1893 210 69 21 chr12 23577280 23577761 -120208694 - L1ME1 LINE L1 0 6166 5663 1501 236 83 23 chr12 23577760 23578303 -120208152 - L1M3 LINE L1 -617 5566 4853 * 285 138 0 69 chr12 23578353 23578411 -120208044 + MLT1B LTR MaLR 1 54 -336 2441 246 103 29 chr12 23578424 23579573 -120206882 - L1ME1 LINE L1 -803 5343 4041 1921 165 23 33 chr12 23579573 23579966 -120206489 + MLT1B LTR MaLR 2 390 0 2441 246 103 29 chr12 23579966 23580179 -120206276 - L1ME1 LINE L1 -2105 4041 3845 21 71 0 0 chr12 23581300 23581342 -120205113 + AT_rich Low_complexity Low_complexity 1 42 0 618 81 0 0 chr12 23581342 23581429 -120205026 - L1MA1 LINE L1 -4 6298 6212 542 230 68 79 chr12 23581664 23581846 -120204609 + MIR SINE MIR 1 184 -78 2057 150 0 10 chr12 23581846 23582160 -120204295 + AluJb SINE Alu 2 312 0 1846 122 4 0 chr12 23582162 23582424 -120204031 + AluSp SINE Alu 43 305 -8 542 230 68 79 chr12 23582424 23582503 -120203952 + MIR SINE MIR 185 262 0 349 280 9 0 chr12 23582519 23582626 -120203829 + (TA)n Simple_repeat Simple_repeat 2 109 0 195 186 0 0 chr12 23582626 23582669 -120203786 + GA-rich Low_complexity Low_complexity 2 44 0 256 329 105 20 chr12 23582735 23582887 -120203568 + MIR SINE MIR 98 262 0 1932 142 4 0 chr12 23582975 23583256 -120203199 + AluJo SINE Alu 1 282 -30 212 0 36 0 chr12 23583259 23583287 -120203168 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 288 284 21 67 chr12 23583505 23583790 -120202665 + L1MC4a LINE L1 4881 5152 -994 188 33 0 33 chr12 23583793 23583823 -120202632 + (TA)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr12 23584006 23584034 -120202421 + AT_rich Low_complexity Low_complexity 1 28 0 451 246 17 29 chr12 23584034 23584209 -120202246 + L1MC4a LINE L1 5255 5427 -2381 1095 276 16 50 chr12 23584242 23584746 -120201709 + L1MC4a LINE L1 5548 6034 -1774 4120 206 47 30 chr12 23584962 23586110 -120200345 - L1M3 LINE L1 -1430 4716 3550 1770 234 17 17 chr12 23586101 23586627 -120199828 - L1M4 LINE L1 -1036 5110 4479 * 381 235 4 42 chr12 23586647 23586747 -120199708 - AluJo SINE Alu -103 199 120 661 201 52 0 chr12 23586753 23586927 -120199528 - L1M4 LINE L1 -1675 4471 4289 1088 242 17 20 chr12 23586927 23587220 -120199235 + MLT1D LTR MaLR 214 505 0 668 306 71 66 chr12 23587220 23587573 -120198882 - L1M4 LINE L1 -1077 5069 4710 1153 191 137 73 chr12 23587573 23587945 -120198510 + MSTD LTR MaLR 1 396 0 668 306 71 66 chr12 23587945 23588182 -120198273 - L1M4 LINE L1 -1436 4710 4476 2790 219 14 12 chr12 23589626 23590316 -120196139 - L1 LINE L1 -1134 5012 4321 297 351 0 15 chr12 23591175 23591309 -120195146 + L3b LINE CR1 1240 1371 -212 1580 178 71 63 chr12 23591456 23591918 -120194537 + LTR37B LTR ERV1 3 468 0 243 0 0 0 chr12 23591955 23591982 -120194473 + (TG)n Simple_repeat Simple_repeat 1 27 0 306 52 35 17 chr12 23592368 23592426 -120194029 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 256 293 27 0 chr12 23592745 23592820 -120193635 + MIR3 SINE MIR 109 185 -23 290 268 0 0 chr12 23592916 23592987 -120193468 + GA-rich Low_complexity Low_complexity 4 74 0 3765 117 16 25 chr12 23594005 23594576 -120191879 - MER61E LTR ERV1 -3 566 1 231 182 0 18 chr12 23594627 23594682 -120191773 - L1MD3 LINE L1 -10 7985 7932 1197 130 72 24 chr12 23594717 23594924 -120191531 + MER20 DNA MER1_type 1 217 -2 284 232 0 0 chr12 23594956 23595025 -120191430 + MER116 DNA Mariner 1 69 -11 519 233 80 40 chr12 23595026 23595275 -120191180 - L1MC4 LINE L1 -93 7949 7691 21 57 0 0 chr12 23596179 23596214 -120190241 + AT_rich Low_complexity Low_complexity 1 35 0 1941 214 5 10 chr12 23596298 23596713 -120189742 + L1MC4a LINE L1 4870 5282 -864 6473 42 1 1 chr12 23596720 23597953 -120188502 + L1PA5 LINE L1 4599 5831 -323 206 147 29 0 chr12 23599837 23599871 -120186584 - MIR SINE MIR -8 254 220 22 0 0 0 chr12 23599985 23600007 -120186448 + AT_rich Low_complexity Low_complexity 1 22 0 209 242 30 15 chr12 23600064 23600130 -120186325 + GA-rich Low_complexity Low_complexity 2 68 0 208 330 17 85 chr12 23600371 23600489 -120185966 + MIR SINE MIR 28 137 -125 380 179 38 38 chr12 23600649 23600755 -120185700 + L1MC4a LINE L1 5322 5427 -2381 1164 278 13 53 chr12 23600788 23601334 -120185121 + L1MC4a LINE L1 5548 6071 -1737 23 33 0 0 chr12 23602786 23602816 -120183639 + AT_rich Low_complexity Low_complexity 1 30 0 301 210 25 0 chr12 23603275 23603356 -120183099 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 1020 209 24 0 chr12 23604150 23604361 -120182094 - MER20 DNA MER1_type -3 216 1 838 227 25 128 chr12 23605702 23606100 -120180355 - LTR37B LTR ERV1 -1 467 132 1019 191 67 0 chr12 23606100 23606309 -120180146 + MER58A DNA MER1_type 1 223 -1 838 227 25 128 chr12 23606309 23606425 -120180030 - LTR37B LTR ERV1 -336 132 6 21 0 0 0 chr12 23606820 23606841 -120179614 + AT_rich Low_complexity Low_complexity 1 21 0 460 294 172 5 chr12 23608693 23608897 -120177558 + L2 LINE L2 1848 2085 -1229 518 99 0 0 chr12 23608937 23609008 -120177447 + AluS SINE Alu 1 71 -242 449 261 16 0 chr12 23609047 23609204 -120177251 + HERVL LTR ERVL 5124 5285 -203 611 290 157 52 chr12 23609234 23609655 -120176800 + MLT1H LTR MaLR 69 533 -16 320 351 47 7 chr12 23610095 23610243 -120176212 + LTR67 LTR ERVL 2 155 -402 4575 214 80 3 chr12 23610246 23611288 -120175167 + HERVL LTR ERVL 3384 4505 -1259 47 0 0 17 chr12 23611336 23611367 -120175088 + AT_rich Low_complexity Low_complexity 1 32 -25 1171 15 0 0 chr12 23611367 23611500 -120174955 - L1PA3 LINE L1 -3 6152 6020 47 0 0 17 chr12 23611500 23611526 -120174929 + AT_rich Low_complexity Low_complexity 32 57 0 922 272 95 55 chr12 23611595 23612344 -120174111 - LTR1B LTR ERV1 -15 811 33 1807 159 35 0 chr12 23613126 23613415 -120173040 - AluJb SINE Alu -13 299 1 286 241 0 0 chr12 23615187 23615245 -120171210 + MLT1C LTR MaLR 213 270 -197 1668 128 100 37 chr12 23615253 23615456 -120170999 + THE1C LTR MaLR 1 237 -138 2363 179 199 50 chr12 23615456 23616175 -120170280 - LTR1B LTR ERV1 0 826 1 1668 128 100 37 chr12 23616175 23616322 -120170133 + THE1C LTR MaLR 237 373 -2 581 261 7 13 chr12 23616331 23616484 -120169971 + MLT1C LTR MaLR 316 467 0 956 243 15 0 chr12 23617171 23617377 -120169078 - MIR SINE MIR -9 253 45 706 119 200 19 chr12 23617377 23617537 -120168918 - MER53 DNA DNA 0 189 1 21 0 0 0 chr12 23617588 23617609 -120168846 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr12 23618522 23618554 -120167901 + (CA)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr12 23619644 23619665 -120166790 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 231 105 26 0 chr12 23619869 23619907 -120166548 + Alu SINE Alu 2 40 -262 1704 141 24 31 chr12 23619907 23620197 -120166258 + AluJo SINE Alu 11 298 -14 190 416 8 0 chr12 23621066 23621191 -120165264 + MIR3 SINE MIR 76 201 -7 183 184 0 0 chr12 23621202 23621240 -120165215 + (TA)n Simple_repeat Simple_repeat 1 38 0 241 329 24 0 chr12 23622093 23622175 -120164280 + MIR3 SINE MIR 118 201 -7 350 347 27 14 chr12 23623247 23623394 -120163061 + MIR SINE MIR 106 254 -8 212 250 32 16 chr12 23624137 23624261 -120162194 + (TA)n Simple_repeat Simple_repeat 1 126 0 270 0 0 0 chr12 23624274 23624304 -120162151 + (TA)n Simple_repeat Simple_repeat 2 31 0 1198 157 0 0 chr12 23624872 23625069 -120161386 - MER2 DNA MER2_type -148 197 1 345 225 27 18 chr12 23625079 23625190 -120161265 + L1MA9 LINE L1 6201 6312 0 733 259 39 15 chr12 23626279 23626484 -120159971 + MER63A DNA MER1_type 1 210 0 657 292 37 75 chr12 23626883 23627284 -120159171 + MER20B DNA MER1_type 3 388 -395 340 263 0 0 chr12 23627465 23627560 -120158895 + MER20B DNA MER1_type 509 603 -180 475 373 86 21 chr12 23627578 23627916 -120158539 + L2 LINE L2 2435 2794 -520 216 316 68 26 chr12 23628006 23628123 -120158332 + L2 LINE L2 2935 3056 -216 233 309 138 6 chr12 23628519 23628700 -120157755 - MIR SINE MIR 0 262 58 385 283 13 68 chr12 23629097 23629289 -120157166 - MIR SINE MIR -46 216 34 249 108 0 0 chr12 23630137 23630174 -120156281 + (CA)n Simple_repeat Simple_repeat 2 38 0 411 225 132 31 chr12 23630731 23630860 -120155595 + L2 LINE L2 3172 3313 0 22 0 0 0 chr12 23631349 23631371 -120155084 + AT_rich Low_complexity Low_complexity 1 22 0 3579 36 0 0 chr12 23631375 23631825 -120154630 - L1HS LINE L1 0 6155 5706 1054 61 0 79 chr12 23631925 23632090 -120154365 + L1PA5 LINE L1 5998 6149 -5 2180 127 3 0 chr12 23632108 23632407 -120154048 + AluSq SINE Alu 6 305 -8 2714 270 67 65 chr12 23632443 23634672 -120151783 + L1M3b LINE L1 9 2028 -4323 2308 64 47 7 chr12 23634672 23634969 -120151486 + AluY SINE Alu 1 309 -2 2714 270 67 65 chr12 23634969 23635110 -120151345 + L1M3b LINE L1 2028 2167 -4184 876 182 0 16 chr12 23635111 23635303 -120151152 + L1M4 LINE L1 4911 5099 -1047 2142 157 51 37 chr12 23635308 23635736 -120150719 - Tigger2a DNA MER2_type 0 434 1 2839 163 6 11 chr12 23635736 23636247 -120150208 + L1MA6 LINE L1 5777 6300 0 12874 170 46 45 chr12 23636305 23636404 -120150051 + L1MA7 LINE L1 3237 3334 -4376 2261 113 0 10 chr12 23636404 23636715 -120149740 - AluSg SINE Alu -2 308 1 12874 170 46 45 chr12 23636715 23641089 -120145366 + L1MA7 LINE L1 3334 7708 -2 2317 180 28 10 chr12 23641099 23641594 -120144861 + L1M4 LINE L1 5293 5796 -388 207 139 0 0 chr12 23641651 23641687 -120144768 + (TG)n Simple_repeat Simple_repeat 2 37 0 181 346 106 0 chr12 23641886 23641990 -120144465 + L3 LINE CR1 1129 1243 -334 380 294 25 8 chr12 23643936 23644055 -120142400 + MER5C DNA MER1_type 1 121 -203 248 170 0 0 chr12 23644082 23644135 -120142320 + MER5C DNA MER1_type 208 260 -64 2027 102 0 4 chr12 23644136 23644401 -120142054 + AluSx SINE Alu 3 266 -46 1553 158 20 41 chr12 23644675 23645016 -120141439 + THE1C LTR MaLR 1 334 -41 1107 135 0 0 chr12 23646641 23646833 -120139622 + L1MA4 LINE L1 6103 6294 -6 636 235 114 71 chr12 23647746 23648070 -120138385 - MER102b DNA MER1_type -3 338 1 306 245 43 11 chr12 23648693 23648787 -120137668 - MLT1K LTR MaLR -7 581 485 340 267 46 46 chr12 23649359 23649490 -120136965 + L2 LINE L2 2510 2640 -674 1268 207 61 51 chr12 23649504 23649915 -120136540 - MLT1C LTR MaLR -45 422 8 889 300 90 26 chr12 23649934 23650526 -120135929 + L2 LINE L2 2637 3282 -31 1072 210 22 121 chr12 23650526 23650931 -120135524 - MLT1A1 LTR MaLR 0 365 1 889 300 90 26 chr12 23650931 23650964 -120135491 + L2 LINE L2 3282 3311 -2 4339 125 55 76 chr12 23652842 23653760 -120132695 + MER4D LTR ERV1 1 898 -5 2593 224 85 16 chr12 23654005 23654696 -120131759 - MER21B LTR ERV1 -124 739 1 2236 159 52 24 chr12 23655087 23655509 -120130946 + Tigger2a DNA MER2_type 1 434 0 454 302 49 69 chr12 23655684 23656135 -120130320 - L1ME LINE L1 -465 5766 5327 2212 252 49 41 chr12 23656440 23657578 -120128877 - L1MEc LINE L1 -3675 2540 1436 490 261 68 38 chr12 23657653 23658048 -120128407 - L1MEc LINE L1 -5242 1154 748 4889 159 26 24 chr12 23658076 23659429 -120127026 - L1PA16 LINE L1 -9 6157 4797 1797 275 40 41 chr12 23659422 23659956 -120126499 - L1MEc LINE L1 -5636 760 226 * 2166 129 0 3 chr12 23659956 23660267 -120126188 + AluSg SINE Alu 1 310 0 1797 275 40 41 chr12 23660267 23660364 -120126091 - L1MEc LINE L1 -6170 226 130 1618 152 13 25 chr12 23660364 23660676 -120125779 + MER4E LTR ERV1 1 296 -470 917 224 46 12 chr12 23660779 23661052 -120125403 - MER61C LTR ERV1 -166 268 1 1656 181 3 27 chr12 23661132 23661425 -120125030 - AluJb SINE Alu -25 287 2 237 333 70 9 chr12 23661441 23661555 -120124900 - MIR SINE MIR -56 206 86 654 261 182 50 chr12 23662173 23662553 -120123902 - L2 LINE L2 -48 3265 2836 1922 176 22 28 chr12 23662589 23662742 -120123713 + MLT1A1 LTR MaLR 4 156 -209 2261 109 0 0 chr12 23662742 23663046 -120123409 + AluSg SINE Alu 1 304 -6 1922 176 22 28 chr12 23663046 23663256 -120123199 + MLT1A1 LTR MaLR 156 365 0 195 291 0 0 chr12 23663351 23663406 -120123049 + L2 LINE L2 3214 3268 -4 187 268 89 0 chr12 23663604 23663660 -120122795 - L2 LINE L2 -11 3261 3201 2289 68 0 56 chr12 23663920 23664241 -120122214 + AluY SINE Alu 1 303 -8 320 325 62 36 chr12 23664489 23664502 -120121953 + L1M4 LINE L1 2953 2964 -3182 6678 74 7 0 chr12 23664502 23666264 -120120191 + L1PA13 LINE L1 4398 6163 0 320 325 62 36 chr12 23666264 23666444 -120120011 + L1M4 LINE L1 2964 3151 -2995 903 231 17 27 chr12 23666498 23666796 -120119659 + L1MEc LINE L1 1999 2293 -4103 2944 251 70 30 chr12 23666893 23667327 -120119128 + L1MEc LINE L1 2243 2658 -3557 1955 149 0 3 chr12 23667327 23667623 -120118832 + AluSx SINE Alu 4 298 -14 2944 251 70 30 chr12 23667623 23668471 -120117984 + L1MEc LINE L1 2658 3751 -2464 2669 106 17 5 chr12 23668453 23668869 -120117586 + L1P5 LINE L1 5369 5789 -367 * 221 115 0 19 chr12 23668875 23668927 -120117528 + (TA)n Simple_repeat Simple_repeat 2 52 0 319 237 0 52 chr12 23668927 23669024 -120117431 + L1MC4 LINE L1 6612 6703 -1339 860 103 0 32 chr12 23669025 23669334 -120117121 + (TA)n Simple_repeat Simple_repeat 2 300 0 327 303 0 0 chr12 23669337 23669426 -120117029 + L1MC4 LINE L1 6614 6702 -1340 317 300 0 0 chr12 23669427 23669517 -120116938 + L1MC4 LINE L1 6614 6703 -1339 225 35 0 0 chr12 23669539 23669568 -120116887 - L1MC/D LINE L1 -538 5821 5793 180 0 0 0 chr12 23669568 23669588 -120116867 + (TG)n Simple_repeat Simple_repeat 2 21 0 225 98 0 0 chr12 23669612 23669653 -120116802 - LTR66 LTR ERVL -172 438 398 * 266 70 0 0 chr12 23669622 23669665 -120116790 + LTR66 LTR ERVL 399 441 -169 2317 127 6 6 chr12 23669695 23669708 -120116747 + L1PB4 LINE L1 5782 5794 -362 204 40 0 0 chr12 23669708 23669733 -120116722 + (CA)n Simple_repeat Simple_repeat 2 26 0 2317 127 6 6 chr12 23669733 23670081 -120116374 + L1PB4 LINE L1 5793 6143 -13 1253 256 24 34 chr12 23670090 23670589 -120115866 + L1ME1 LINE L1 3131 3624 -2522 * 3930 229 74 40 chr12 23670587 23672856 -120113599 + L1ME1 LINE L1 3825 6159 -7 3006 245 70 15 chr12 23672967 23673953 -120112502 + L1PB1 LINE L1 6 1045 -5818 5219 198 17 5 chr12 23673958 23679050 -120107405 + L1PB1 LINE L1 1094 6515 -352 316 71 36 0 chr12 23679050 23679106 -120107349 + (TA)n Simple_repeat Simple_repeat 2 59 0 5219 198 17 5 chr12 23679106 23679463 -120106992 + L1PB1 LINE L1 6515 6866 -1 24 53 0 0 chr12 23679463 23679501 -120106954 + AT_rich Low_complexity Low_complexity 1 38 0 1548 242 163 16 chr12 23680308 23680588 -120105867 - MLT1E2 LTR MaLR 0 626 388 2116 95 29 10 chr12 23680588 23680894 -120105561 - AluSx SINE Alu 0 312 1 1548 242 163 16 chr12 23680894 23681159 -120105296 - MLT1E2 LTR MaLR -238 388 1 22 56 0 0 chr12 23681278 23681314 -120105141 + AT_rich Low_complexity Low_complexity 1 36 0 4506 134 34 5 chr12 23681319 23682089 -120104366 + L1MA8 LINE L1 5497 6288 -3 353 146 53 6 chr12 23682099 23682270 -120104185 + (TA)n Simple_repeat Simple_repeat 2 180 0 204 147 40 0 chr12 23682289 23682364 -120104091 + (TA)n Simple_repeat Simple_repeat 1 78 0 604 212 119 7 chr12 23683254 23683405 -120103050 + L1ME1 LINE L1 5987 6154 -12 215 219 0 0 chr12 23684238 23684279 -120102176 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 669 263 120 14 chr12 23684389 23684606 -120101849 + MIR SINE MIR 23 262 0 449 179 151 9 chr12 23684651 23684757 -120101698 + L2 LINE L2 3189 3309 -4 245 250 0 0 chr12 23684823 23684875 -120101580 + L2 LINE L2 3262 3313 0 28 48 0 0 chr12 23684961 23685003 -120101452 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr12 23685831 23685859 -120100596 + AT_rich Low_complexity Low_complexity 1 28 0 636 300 130 32 chr12 23686366 23686989 -120099466 + L1ME2 LINE L1 5279 5960 -161 907 305 34 29 chr12 23687011 23687421 -120099034 + L1MC4a LINE L1 5566 5977 -1831 21 95 0 0 chr12 23687590 23687653 -120098802 + AT_rich Low_complexity Low_complexity 1 63 0 224 325 140 9 chr12 23687923 23688037 -120098418 + MIR SINE MIR 18 146 -62 386 168 288 0 chr12 23688269 23688394 -120098061 - MIR SINE MIR 0 262 102 722 194 0 0 chr12 23689164 23689288 -120097167 + FLAM_A SINE Alu 1 124 -9 24 32 0 0 chr12 23689745 23689776 -120096679 + AT_rich Low_complexity Low_complexity 1 31 0 327 204 18 133 chr12 23690616 23690729 -120095726 - MIR SINE MIR -110 152 53 563 318 74 52 chr12 23690851 23691272 -120095183 + L2 LINE L2 2871 3300 -13 24 0 0 0 chr12 23691674 23691698 -120094757 + AT_rich Low_complexity Low_complexity 1 24 0 2001 136 0 0 chr12 23692083 23692363 -120094092 - AluSx SINE Alu -32 280 1 238 266 31 16 chr12 23692418 23692482 -120093973 - L2 LINE L2 0 3313 3249 25 0 0 0 chr12 23693226 23693251 -120093204 + AT_rich Low_complexity Low_complexity 1 25 0 683 264 98 13 chr12 23694085 23694314 -120092141 - MIR SINE MIR 0 262 20 2097 112 3 7 chr12 23696962 23697257 -120089198 - AluSq SINE Alu -19 294 1 249 289 47 31 chr12 23697968 23698096 -120088359 + L1ME4a LINE L1 5977 6106 -15 926 226 197 52 chr12 23699101 23699183 -120087272 + MSTD LTR MaLR 2 71 -325 1673 170 13 3 chr12 23699183 23699483 -120086972 + AluJb SINE Alu 1 303 -9 2173 100 0 17 chr12 23699483 23699784 -120086671 + AluSx SINE Alu 1 296 -16 926 226 197 52 chr12 23699784 23700045 -120086410 + MSTD LTR MaLR 70 396 0 22 0 0 0 chr12 23701120 23701142 -120085313 + AT_rich Low_complexity Low_complexity 1 22 0 1397 153 131 8 chr12 23703548 23703816 -120082639 - AluJo SINE Alu 0 302 2 363 272 122 14 chr12 23703914 23704061 -120082394 - MIR3 SINE MIR 0 208 46 1750 177 3 0 chr12 23704602 23704896 -120081559 - AluJo SINE Alu -17 295 1 21 36 0 0 chr12 23705411 23705439 -120081016 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 23706213 23706236 -120080219 + AT_rich Low_complexity Low_complexity 1 23 0 322 309 0 32 chr12 23706333 23706456 -120079999 + MIR SINE MIR 129 247 -15 24 0 0 0 chr12 23707897 23707921 -120078534 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr12 23708470 23708499 -120077956 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr12 23709596 23709618 -120076837 + AT_rich Low_complexity Low_complexity 1 22 0 728 237 34 17 chr12 23710025 23710202 -120076253 - MER5A DNA MER1_type -9 180 1 27 29 0 0 chr12 23710995 23711029 -120075426 + AT_rich Low_complexity Low_complexity 1 34 0 204 182 91 0 chr12 23712908 23712952 -120073503 + L2 LINE L2 3265 3312 -1 225 217 14 43 chr12 23712983 23713052 -120073403 - L2 LINE L2 -94 3219 3153 1073 199 142 0 chr12 23713433 23713714 -120072741 - MER33 DNA MER1_type 0 324 4 551 27 27 0 chr12 23713895 23713968 -120072487 - L1PA4 LINE L1 -3 6152 6078 344 284 229 25 chr12 23714263 23714379 -120072076 - L2 LINE L2 -1 3312 3221 342 61 0 0 chr12 23714379 23714428 -120072027 + (CA)n Simple_repeat Simple_repeat 2 50 0 344 284 229 25 chr12 23714428 23714586 -120071869 - L2 LINE L2 -92 3221 2982 2237 123 0 0 chr12 23714942 23715252 -120071203 + AluSx SINE Alu 1 310 -2 2148 116 0 0 chr12 23715457 23715750 -120070705 - AluSx SINE Alu -17 295 3 32 57 0 0 chr12 23715759 23715812 -120070643 + AT_rich Low_complexity Low_complexity 1 53 0 24 53 0 0 chr12 23716058 23716096 -120070359 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr12 23716310 23716333 -120070122 + AT_rich Low_complexity Low_complexity 1 23 0 278 346 46 8 chr12 23716575 23716705 -120069750 + MIR SINE MIR 17 151 -111 1929 149 0 7 chr12 23717182 23717483 -120068972 - AluJb SINE Alu -13 299 1 1258 167 121 39 chr12 23718028 23718310 -120068145 - AluJb SINE Alu -7 305 1 935 181 75 25 chr12 23718443 23718642 -120067813 + MER20 DNA MER1_type 11 219 0 1649 101 47 0 chr12 23719308 23719565 -120066890 + L1MA2 LINE L1 6035 6303 -1 560 249 120 31 chr12 23719774 23720051 -120066404 + L1MEc LINE L1 1799 2064 -4476 1005 303 157 12 chr12 23720057 23720625 -120065830 - L2 LINE L2 -767 2547 1898 25 51 0 0 chr12 23721268 23721307 -120065148 + AT_rich Low_complexity Low_complexity 1 39 0 991 75 48 0 chr12 23721668 23721814 -120064641 + L1MA2 LINE L1 5980 6132 -172 325 111 0 0 chr12 23721814 23721866 -120064589 + L1MA3 LINE L1 6252 6305 0 26 64 0 0 chr12 23721877 23721924 -120064531 + AT_rich Low_complexity Low_complexity 1 47 0 227 294 82 0 chr12 23722213 23722298 -120064157 + L1ME4a LINE L1 5992 6083 -38 7359 27 16 0 chr12 23723254 23724583 -120061872 + L1PA4 LINE L1 4812 6154 -1 2142 126 0 13 chr12 23725245 23725554 -120060901 - AluSx SINE Alu -7 305 1 198 118 0 0 chr12 23725685 23725719 -120060736 + (TA)n Simple_repeat Simple_repeat 1 34 0 1243 225 51 30 chr12 23725719 23726052 -120060403 - MER2 DNA MER2_type 0 345 6 24 0 0 0 chr12 23727145 23727169 -120059286 + AT_rich Low_complexity Low_complexity 1 24 0 2090 138 0 0 chr12 23727970 23728268 -120058187 + AluSg SINE Alu 1 298 -12 540 265 41 27 chr12 23729367 23729514 -120056941 - MIR SINE MIR -111 151 3 67 73 0 0 chr12 23732977 23733114 -120053341 + AT_rich Low_complexity Low_complexity 1 137 0 1279 130 41 12 chr12 23733569 23733815 -120052640 + L1MA4A LINE L1 6045 6297 -6 408 88 0 0 chr12 23734264 23734321 -120052134 + (CA)n Simple_repeat Simple_repeat 2 58 0 272 344 33 11 chr12 23734653 23734743 -120051712 + L2 LINE L2 3176 3267 -5 731 290 92 0 chr12 23735701 23735918 -120050537 + MIR SINE MIR 15 251 -11 283 357 56 0 chr12 23735920 23736046 -120050409 + L2 LINE L2 2564 2696 -618 2054 122 14 0 chr12 23736286 23736574 -120049881 + AluSx SINE Alu 3 294 -18 322 323 132 36 chr12 23736829 23737049 -120049406 + L2 LINE L2 2994 3234 -38 23 92 0 0 chr12 23738376 23738441 -120048014 + AT_rich Low_complexity Low_complexity 1 65 0 1869 162 0 3 chr12 23739891 23740188 -120046267 - AluSx SINE Alu -14 298 3 2304 86 0 19 chr12 23740673 23740986 -120045469 - AluSx SINE Alu -5 307 1 26 30 0 0 chr12 23741515 23741548 -120044907 + AT_rich Low_complexity Low_complexity 1 33 0 1500 82 5 0 chr12 23741625 23741819 -120044636 - AluSq SINE Alu -2 311 117 438 139 16 131 chr12 23742562 23742684 -120043771 - FLAM_A SINE Alu -34 108 1 2726 10 0 7 chr12 23745250 23745556 -120040899 - AluYb8 SINE Alu -14 304 1 292 214 222 24 chr12 23746044 23746170 -120040285 - MIR SINE MIR -4 258 108 2236 116 0 0 chr12 23746302 23746604 -120039851 + AluSq SINE Alu 2 303 -10 334 214 0 0 chr12 23747094 23747164 -120039291 + MER103 DNA DNA 1 70 -96 665 190 0 0 chr12 23747227 23747343 -120039112 + FLAM_C SINE Alu 1 116 -17 27 62 0 0 chr12 23749287 23749335 -120037120 + AT_rich Low_complexity Low_complexity 1 48 0 31 0 0 0 chr12 23751128 23751159 -120035296 + AT_rich Low_complexity Low_complexity 1 31 0 23 86 0 0 chr12 23752724 23752782 -120033673 + AT_rich Low_complexity Low_complexity 1 58 0 191 36 36 0 chr12 23753019 23753047 -120033408 + (TAA)n Simple_repeat Simple_repeat 2 30 0 35 88 0 0 chr12 23753609 23753700 -120032755 + AT_rich Low_complexity Low_complexity 1 91 0 22 0 0 0 chr12 23755188 23755210 -120031245 + AT_rich Low_complexity Low_complexity 1 22 0 745 231 90 33 chr12 23758371 23758583 -120027872 + MER58A DNA MER1_type 1 224 0 274 155 190 0 chr12 23758945 23759003 -120027452 + MER58B DNA MER1_type 269 337 -4 1952 148 0 3 chr12 23759309 23759614 -120026841 + AluJb SINE Alu 1 304 -8 28 61 0 0 chr12 23759622 23759671 -120026784 + AT_rich Low_complexity Low_complexity 1 49 0 230 286 0 14 chr12 23760100 23760170 -120026285 - MIR3 SINE MIR -7 201 133 235 300 11 44 chr12 23760170 23760190 -120026265 - L3 LINE CR1 -3 1574 1488 231 246 24 32 chr12 23760204 23760330 -120026125 + (TA)n Simple_repeat Simple_repeat 2 126 0 21 36 0 0 chr12 23760334 23760362 -120026093 + AT_rich Low_complexity Low_complexity 1 28 0 207 316 26 61 chr12 23760500 23760614 -120025841 - MIR3 SINE MIR -93 115 6 227 191 0 21 chr12 23762178 23762225 -120024230 + Tigger5 DNA MER2_type 17 62 -2261 * 1333 146 65 4 chr12 23762223 23762470 -120023985 + Tigger5 DNA MER2_type 2062 2323 0 591 284 107 5 chr12 23762670 23762885 -120023570 - MIR SINE MIR -9 253 17 663 151 9 0 chr12 23762968 23763074 -120023381 + FLAM_C SINE Alu 1 107 -36 745 212 7 0 chr12 23763276 23763413 -120023042 + AluSx SINE Alu 27 164 -148 22 35 0 0 chr12 23763640 23763669 -120022786 + AT_rich Low_complexity Low_complexity 1 29 0 182 37 37 0 chr12 23763683 23763710 -120022745 + (TA)n Simple_repeat Simple_repeat 2 29 0 2223 84 49 0 chr12 23763710 23763996 -120022459 - AluSp SINE Alu -13 300 1 188 318 71 24 chr12 23764792 23764877 -120021578 - L2 LINE L2 -21 3292 3204 683 349 42 47 chr12 23764885 23765292 -120021163 - L3 LINE CR1 -422 1155 751 354 240 66 79 chr12 23765301 23765605 -120020850 + L1MC5 LINE L1 7640 7939 -22 262 154 0 0 chr12 23766065 23766104 -120020351 + MLT1J LTR MaLR 100 138 -373 233 283 40 30 chr12 23766343 23766442 -120020013 + MLT1J LTR MaLR 358 457 -54 446 235 8 8 chr12 23766455 23766697 -120019758 + (TA)n Simple_repeat Simple_repeat 1 242 0 2064 138 3 0 chr12 23766839 23767135 -120019320 - AluSx SINE Alu -15 297 1 262 180 0 0 chr12 23767660 23767721 -120018734 + L1MC4a LINE L1 2213 2273 -4111 753 206 0 0 chr12 23767727 23767882 -120018573 + L1MC4a LINE L1 4942 5096 -1286 2164 100 28 0 chr12 23768434 23768723 -120017732 + AluSp SINE Alu 1 297 -16 273 237 175 18 chr12 23769409 23769523 -120016932 - L2 LINE L2 -15 3298 3167 434 224 246 17 chr12 23769599 23769778 -120016677 + MIR SINE MIR 31 250 -12 1375 185 65 65 chr12 23770192 23770282 -120016173 + L1MC4a LINE L1 5117 5206 -1176 2116 112 0 14 chr12 23770282 23770576 -120015879 + AluSx SINE Alu 1 290 -22 1375 185 65 65 chr12 23770576 23770928 -120015527 + L1MC4a LINE L1 5205 5559 -823 * 1957 182 11 0 chr12 23770924 23771298 -120015157 + L1MB4 LINE L1 5768 6145 -35 23 0 0 0 chr12 23771320 23771343 -120015112 + AT_rich Low_complexity Low_complexity 1 23 0 1135 239 183 16 chr12 23771995 23772488 -120013967 + L1MC4a LINE L1 5529 6103 -1941 21 71 0 0 chr12 23772726 23772768 -120013687 + AT_rich Low_complexity Low_complexity 1 42 0 317 312 81 23 chr12 23772899 23773120 -120013335 + L1ME4a LINE L1 5801 6034 -87 564 179 14 71 chr12 23773647 23773787 -120012668 + FLAM_A SINE Alu 1 132 -1 379 265 173 12 chr12 23774000 23774162 -120012293 + MIR SINE MIR 65 252 -10 866 277 124 25 chr12 23775323 23775832 -120010623 + L2 LINE L2 1605 2163 -1151 886 259 141 15 chr12 23775937 23776090 -120010365 + MER20B DNA MER1_type 82 214 -569 2241 113 10 3 chr12 23776090 23776400 -120010055 + AluSq SINE Alu 1 312 -1 886 259 141 15 chr12 23776400 23776636 -120009819 + MER20B DNA MER1_type 214 520 -263 458 232 66 53 chr12 23776727 23776878 -120009577 + L2 LINE L2 3138 3290 -23 2210 104 0 0 chr12 23776955 23777244 -120009211 + AluSx SINE Alu 1 289 -23 298 236 101 14 chr12 23777271 23777419 -120009036 + MER20B DNA MER1_type 623 783 0 754 286 189 50 chr12 23777431 23778344 -120008111 + L2 LINE L2 2244 3312 -1 449 106 0 96 chr12 23778634 23778728 -120007727 + AluJ/FLAM SINE Alu 1 85 -227 299 270 158 68 chr12 23778803 23779025 -120007430 + L2 LINE L2 2828 3069 -203 574 258 172 23 chr12 23779071 23779292 -120007163 + MIR SINE MIR 7 260 -2 183 302 156 10 chr12 23779315 23779411 -120007044 + L2 LINE L2 3158 3267 -5 198 71 0 0 chr12 23779972 23780000 -120006455 + (TG)n Simple_repeat Simple_repeat 2 29 0 243 61 0 0 chr12 23780087 23780120 -120006335 + (TG)n Simple_repeat Simple_repeat 2 34 0 25 0 0 0 chr12 23780644 23780669 -120005786 + GC_rich Low_complexity Low_complexity 1 25 0 1964 83 4 0 chr12 23781323 23781575 -120004880 + AluSq SINE Alu 1 253 -60 1631 145 10 72 chr12 23781770 23782074 -120004381 + AluJo SINE Alu 6 290 -22 1565 176 14 4 chr12 23782799 23783097 -120003358 - AluJo SINE Alu 0 302 2 497 340 73 17 chr12 23783588 23783820 -120002635 - MIR SINE MIR 0 262 18 317 120 0 0 chr12 23783929 23783979 -120002476 + U5 snRNA snRNA 1 50 -66 1173 314 62 35 chr12 23784298 23784488 -120001967 + L2 LINE L2 1752 1935 -1379 747 191 0 0 chr12 23784488 23784614 -120001841 - FLAM_A SINE Alu -7 126 1 1173 314 62 35 chr12 23784614 23785016 -120001439 + L2 LINE L2 1935 2360 -954 186 143 0 0 chr12 23785064 23785099 -120001356 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1849 167 3 0 chr12 23785253 23785540 -120000915 - AluJb SINE Alu -14 298 11 2122 104 14 3 chr12 23785743 23786030 -120000425 - AluSq SINE Alu -23 290 1 2185 95 0 7 chr12 23786270 23786581 -119999874 - AluSx SINE Alu 0 309 1 1927 161 7 7 chr12 23786924 23787223 -119999232 + AluSx SINE Alu 1 299 -13 421 375 46 0 chr12 23788224 23788376 -119998079 + L2 LINE L2 2732 2890 -424 1237 287 121 51 chr12 23788510 23789330 -119997125 + L1MC4a LINE L1 5264 6025 -1783 1963 114 179 16 chr12 23789330 23789698 -119996757 + MSTA LTR MaLR 1 428 0 1237 287 121 51 chr12 23789698 23790125 -119996330 + L1MC4a LINE L1 6025 6421 -1387 1721 166 3 42 chr12 23790125 23790433 -119996022 - AluJb SINE Alu 0 312 17 180 0 0 0 chr12 23790436 23790456 -119995999 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1237 287 121 51 chr12 23790456 23790817 -119995638 + L1MC4a LINE L1 6422 6990 -818 4508 100 84 75 chr12 23790836 23791849 -119994606 - MER11A LTR ERVK 0 1266 245 326 67 0 0 chr12 23791852 23791897 -119994558 - MER11A LTR ERVK -1221 45 1 2356 85 0 3 chr12 23791911 23792206 -119994249 + AluY SINE Alu 1 294 -17 1718 232 40 51 chr12 23792217 23792925 -119993530 + L1MC5 LINE L1 6968 7667 -294 935 205 19 19 chr12 23792977 23793182 -119993273 + MLT1E2 LTR MaLR 311 515 -111 1929 163 51 9 chr12 23793302 23793652 -119992803 + MLT1A1 LTR MaLR 1 365 0 2298 101 13 10 chr12 23793870 23794178 -119992277 - AluSx SINE Alu -3 309 1 1329 108 21 16 chr12 23794331 23794525 -119991930 - AluSx SINE Alu -117 195 1 1294 107 23 0 chr12 23794704 23794881 -119991574 - AluSx SINE Alu -131 181 1 299 337 68 92 chr12 23795154 23795403 -119991052 - L2 LINE L2 0 3272 3030 2027 202 114 7 chr12 23795403 23795859 -119990596 - MLT1D LTR MaLR 0 505 1 2137 172 22 15 chr12 23795966 23796368 -119990087 + MSTB LTR MaLR 1 405 -21 260 262 99 43 chr12 23796584 23796725 -119989730 - L2 LINE L2 -526 2788 2640 687 206 17 17 chr12 23796728 23796908 -119989547 - MER96B DNA MER1_type? -1 416 237 216 379 9 0 chr12 23796908 23797024 -119989431 - L2 LINE L2 -673 2641 2525 319 283 57 0 chr12 23797103 23797209 -119989246 - L2 LINE L2 -923 2391 2280 194 384 68 17 chr12 23797427 23797604 -119988851 + L2 LINE L2 451 636 -2678 2181 90 20 23 chr12 23797756 23798056 -119988399 + AluSq SINE Alu 1 299 -14 322 293 203 8 chr12 23798251 23798374 -119988081 + MER91A DNA MER1_type 23 169 -27 1617 189 46 6 chr12 23798381 23798709 -119987746 + MER58B DNA MER1_type 1 341 0 396 360 69 22 chr12 23798722 23799128 -119987327 + L2 LINE L2 1134 1558 -1756 2292 221 25 50 chr12 23799130 23799696 -119986759 + MLT2B3 LTR ERVL 3 554 0 1907 199 53 11 chr12 23799697 23800318 -119986137 + ERVL-B3 LTR ERVL 2 733 -5031 188 271 93 28 chr12 23800328 23800435 -119986020 + L2 LINE L2 1555 1668 -1646 1636 173 0 0 chr12 23800452 23800706 -119985749 - AluJo SINE Alu -58 254 1 560 244 31 19 chr12 23800733 23800893 -119985562 + L2 LINE L2 1956 2117 -1197 968 145 18 130 chr12 23800893 23801224 -119985231 - Charlie1a DNA MER1_type 0 1455 1162 889 250 18 18 chr12 23801234 23801454 -119985001 + MER58A DNA MER1_type 4 223 -1 4508 192 38 58 chr12 23801456 23802047 -119984408 - Charlie1a DNA MER1_type -1595 1166 610 2567 55 0 3 chr12 23802047 23802357 -119984098 - AluY SINE Alu -2 309 1 4508 192 38 58 chr12 23802357 23802955 -119983500 - Charlie1a DNA MER1_type -2151 610 1 1566 242 154 34 chr12 23802955 23803566 -119982889 + L2 LINE L2 2110 2793 -521 465 246 50 57 chr12 23803566 23803811 -119982644 - MLT1H LTR MaLR 0 589 348 1521 238 136 65 chr12 23803921 23804719 -119981736 - LTR28 LTR ERV1 0 1020 107 342 197 145 7 chr12 23804744 23804877 -119981578 - LTR28 LTR ERV1 -476 160 1 1157 223 29 141 chr12 23804912 23805144 -119981311 + MER97c DNA MER1_type? 1 135 -955 2054 125 0 16 chr12 23805144 23805449 -119981006 - AluSx SINE Alu -2 310 11 1157 223 29 141 chr12 23805449 23805777 -119980678 + MER97c DNA MER1_type? 135 498 -592 547 141 0 0 chr12 23805786 23805864 -119980591 + AluJ/FLAM SINE Alu 1 78 -234 317 259 40 23 chr12 23805917 23806091 -119980364 + MER97c DNA MER1_type? 883 1059 -31 821 127 7 7 chr12 23806092 23806234 -119980221 + L1MB3 LINE L1 6042 6183 0 326 220 17 0 chr12 23806238 23806297 -119980158 + MER5B DNA MER1_type 61 120 -58 316 307 62 62 chr12 23806336 23806561 -119979894 + L1MEd LINE L1 967 1191 -4928 2023 152 0 0 chr12 23806848 23807138 -119979317 + AluJb SINE Alu 5 294 -18 31 44 0 0 chr12 23807188 23807233 -119979222 + AT_rich Low_complexity Low_complexity 1 45 0 2206 115 3 0 chr12 23807787 23808083 -119978372 - AluSp SINE Alu -16 297 1 2598 144 2 79 chr12 23808224 23808730 -119977725 - MLT1C LTR MaLR 0 467 1 1927 158 14 0 chr12 23809326 23809644 -119976811 + AluJb SINE Alu 1 322 0 2325 98 0 0 chr12 23809893 23810188 -119976267 - AluY SINE Alu -16 295 1 647 210 0 8 chr12 23810211 23810330 -119976125 + FRAM SINE Alu 1 113 -63 25 0 0 0 chr12 23810341 23810366 -119976089 + AT_rich Low_complexity Low_complexity 1 25 0 2105 141 7 0 chr12 23810508 23810812 -119975643 - AluSx SINE Alu -6 306 1 1136 156 32 18 chr12 23811480 23811698 -119974757 + AluJo SINE Alu 87 307 -5 2021 131 3 0 chr12 23811765 23812071 -119974384 + AluSx SINE Alu 1 307 0 1201 130 0 0 chr12 23812252 23812414 -119974041 - AluSg/x SINE Alu -17 295 134 1822 225 28 24 chr12 23812732 23812857 -119973598 + L1ME1 LINE L1 5331 5454 -712 1517 220 56 11 chr12 23812857 23813230 -119973225 - MLT1B LTR MaLR 0 390 1 1822 225 28 24 chr12 23813230 23813550 -119972905 + L1ME1 LINE L1 5454 5781 -385 180 0 0 0 chr12 23813550 23813570 -119972885 + (TA)n Simple_repeat Simple_repeat 2 21 0 1822 225 28 24 chr12 23813570 23813616 -119972839 + L1ME1 LINE L1 5781 5825 -341 * 2056 211 79 49 chr12 23813612 23814058 -119972397 - L1ME LINE L1 -392 5774 5343 1011 192 6 0 chr12 23814058 23814230 -119972225 - FAM SINE Alu -2 173 1 2056 211 79 49 chr12 23814230 23814579 -119971876 - L1ME LINE L1 -823 5343 4935 2708 133 21 16 chr12 23814579 23815007 -119971448 - MSTB1 LTR MaLR 0 432 3 2056 211 79 49 chr12 23815007 23815155 -119971300 - L1ME LINE L1 -1231 4935 4793 26 30 0 0 chr12 23815158 23815191 -119971264 + AT_rich Low_complexity Low_complexity 1 33 0 316 216 11 34 chr12 23815205 23815293 -119971162 + L1MC4 LINE L1 6616 6701 -1341 211 176 40 27 chr12 23815294 23815368 -119971087 + (TA)n Simple_repeat Simple_repeat 1 75 0 292 167 106 0 chr12 23815416 23815482 -119970973 - L1ME LINE L1 -1364 4782 4710 806 168 61 5 chr12 23815482 23815678 -119970777 + MER114 LTR ERV 19 225 -423 186 43 0 0 chr12 23815678 23815701 -119970754 + (TG)n Simple_repeat Simple_repeat 2 24 0 809 129 0 9 chr12 23815701 23815817 -119970638 - FLAM_C SINE Alu -26 117 3 318 215 90 35 chr12 23815817 23815961 -119970494 + MER114 LTR ERV 212 363 -285 453 205 34 8 chr12 23816022 23816139 -119970316 + MER114 LTR ERV 499 618 -30 1762 138 69 0 chr12 23816354 23816629 -119969826 - AluSx SINE Alu -18 294 1 887 114 0 0 chr12 23816652 23816775 -119969680 - AluSg/x SINE Alu -16 294 172 267 157 0 0 chr12 23816805 23816856 -119969599 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 759 181 0 0 chr12 23816896 23817012 -119969443 - FLAM_C SINE Alu -15 118 3 417 286 0 0 chr12 23817228 23817354 -119969101 - L1ME1 LINE L1 -5 6161 6036 995 198 25 25 chr12 23817358 23817596 -119968859 + L1ME2 LINE L1 5679 5916 -248 1171 163 6 0 chr12 23817762 23817934 -119968521 + AluSx SINE Alu 1 173 -139 1779 129 14 30 chr12 23817992 23818287 -119968168 + AluSx SINE Alu 1 290 -22 2160 154 46 29 chr12 23818302 23818717 -119967738 - Tigger2a DNA MER2_type -2 432 11 2018 126 14 7 chr12 23819087 23819380 -119967075 + AluSx SINE Alu 1 295 -17 465 19 0 0 chr12 23819752 23819806 -119966649 + (CA)n Simple_repeat Simple_repeat 2 55 0 2342 161 47 79 chr12 23819839 23820411 -119966044 + MER41C LTR ERV1 1 554 0 2268 107 0 0 chr12 23821020 23821318 -119965137 - AluSc SINE Alu -11 298 1 310 258 0 0 chr12 23821607 23821669 -119964786 + L2 LINE L2 3248 3309 -4 238 303 11 22 chr12 23821868 23821957 -119964498 - MLT1-int LTR MaLR -1279 92 5 433 209 76 0 chr12 23822075 23822180 -119964275 + Charlie4 DNA MER1_type 1841 1953 -8 2267 54 50 0 chr12 23822188 23822467 -119963988 - AluSp SINE Alu -20 293 1 1387 143 0 0 chr12 23822679 23822882 -119963573 + AluJo SINE Alu 87 289 -23 1419 160 0 0 chr12 23822883 23823095 -119963360 - AluJb SINE Alu -99 213 2 2198 105 3 16 chr12 23823443 23823757 -119962698 + AluSq SINE Alu 1 310 -3 521 208 92 25 chr12 23823942 23824062 -119962393 - FLAM_C SINE Alu -15 128 1 1093 192 0 0 chr12 23824147 23824329 -119962126 - AluJo SINE Alu -44 268 87 2011 159 0 0 chr12 23824738 23825046 -119961409 - AluSx SINE Alu -1 311 4 2031 106 53 0 chr12 23825804 23826086 -119960369 + AluSc SINE Alu 1 297 -12 821 160 8 0 chr12 23826375 23826506 -119959949 - FLAM_C SINE Alu -11 132 1 1941 146 13 7 chr12 23827024 23827333 -119959122 + AluJo SINE Alu 1 311 -1 328 247 46 93 chr12 23827979 23828173 -119958282 - L1MC5 LINE L1 -37 7924 7740 569 163 0 0 chr12 23829320 23829406 -119957049 - FRAM SINE Alu -52 124 39 1980 107 3 27 chr12 23829432 23829731 -119956724 - AluSx SINE Alu -20 292 1 504 293 60 0 chr12 23829731 23829946 -119956509 - L1ME4a LINE L1 -292 5829 5602 257 261 0 14 chr12 23830223 23830292 -119956163 + CT-rich Low_complexity Low_complexity 4 71 0 528 299 83 18 chr12 23830422 23830639 -119955816 - L3 LINE CR1 -225 1352 1122 2038 140 0 34 chr12 23830866 23831188 -119955267 + AluSq SINE Alu 1 311 -2 803 11 0 0 chr12 23831212 23831306 -119955149 - L1PA2 LINE L1 -3 6152 6059 24 53 0 0 chr12 23831351 23831389 -119955066 + AT_rich Low_complexity Low_complexity 1 38 0 2060 136 0 10 chr12 23832092 23832394 -119954061 + AluSx SINE Alu 1 299 -13 2188 106 0 20 chr12 23833820 23834123 -119952332 - AluSx SINE Alu -15 297 1 1688 160 80 12 chr12 23835062 23835387 -119951068 + MER7A DNA MER2_type 1 345 -1 264 300 106 62 chr12 23835396 23835556 -119950899 - L2 LINE L2 0 3313 3147 26 30 0 0 chr12 23835727 23835760 -119950695 + AT_rich Low_complexity Low_complexity 1 33 0 2321 92 3 16 chr12 23836176 23836491 -119949964 - AluSq SINE Alu 0 313 3 189 125 200 0 chr12 23836829 23836869 -119949586 - L2 LINE L2 -5 3308 3261 180 0 0 0 chr12 23836890 23836910 -119949545 + (CA)n Simple_repeat Simple_repeat 1 20 0 282 306 75 0 chr12 23837090 23837224 -119949231 - MIR SINE MIR 0 262 119 307 136 29 37 chr12 23837326 23837405 -119949050 + L1MB2 LINE L1 6077 6161 -10 387 0 0 0 chr12 23837413 23837456 -119948999 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 391 191 73 0 chr12 23837466 23837576 -119948879 + L1ME4a LINE L1 5798 5915 -206 326 263 17 8 chr12 23837590 23837708 -119948747 + (TA)n Simple_repeat Simple_repeat 1 119 0 1069 142 0 0 chr12 23837708 23837863 -119948592 - AluSg/x SINE Alu -18 294 140 478 208 10 10 chr12 23838030 23838126 -119948329 + L1 LINE L1 1499 1594 -5902 * 6153 192 23 19 chr12 23838114 23838275 -119948180 + L1 LINE L1 3412 3571 -3994 1616 188 98 19 chr12 23838275 23838642 -119947813 + MSTD LTR MaLR 1 396 0 6153 192 23 19 chr12 23838642 23839998 -119946457 + L1 LINE L1 3571 4942 -2623 4579 185 25 21 chr12 23840003 23840706 -119945749 + L1 LINE L1 5703 6415 -1160 1782 165 0 3 chr12 23840706 23841019 -119945436 - AluJb SINE Alu 0 312 1 4579 185 25 21 chr12 23841019 23841411 -119945044 + L1 LINE L1 6415 6804 -771 3948 131 18 31 chr12 23841423 23841498 -119944957 + L1MA7 LINE L1 5254 5328 -963 2295 125 0 0 chr12 23841498 23841810 -119944645 + AluSx SINE Alu 1 312 0 3948 131 18 31 chr12 23841810 23842443 -119944012 + L1MA7 LINE L1 5328 5953 -338 959 169 0 0 chr12 23842443 23842591 -119943864 + AluSg/x SINE Alu 135 282 -30 386 85 17 0 chr12 23842593 23842652 -119943803 + (TTCC)n Simple_repeat Simple_repeat 3 62 0 198 103 0 0 chr12 23842657 23842686 -119943769 + (A)n Simple_repeat Simple_repeat 1 29 0 680 147 93 20 chr12 23842703 23842853 -119943602 + L1MA7 LINE L1 5936 6096 -195 1758 37 9 0 chr12 23842853 23843103 -119943352 + L1PA7 LINE L1 5923 6174 0 1039 104 6 16 chr12 23843107 23843290 -119943165 + L1MA7 LINE L1 6111 6291 0 27 0 0 0 chr12 23843861 23843888 -119942567 + AT_rich Low_complexity Low_complexity 1 27 0 1564 162 0 12 chr12 23844157 23844410 -119942045 - AluJb SINE Alu -62 250 1 2535 154 7 23 chr12 23844551 23844980 -119941475 + MSTB LTR MaLR 5 426 0 2658 15 2 2 chr12 23845340 23845757 -119940698 - L1P1 LINE L1 -661 5494 5078 24 53 0 0 chr12 23845817 23845855 -119940600 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr12 23848474 23848502 -119937953 + AT_rich Low_complexity Low_complexity 1 28 0 1186 133 11 6 chr12 23849289 23849469 -119936986 + AluSq SINE Alu 1 181 -132 583 180 0 0 chr12 23849470 23849570 -119936885 - AluJb SINE Alu -209 103 4 449 269 55 33 chr12 23849573 23849755 -119936700 - MIR SINE MIR -76 186 1 309 120 0 0 chr12 23849991 23850041 -119936414 + L1MA1 LINE L1 6212 6261 -41 235 236 0 0 chr12 23850478 23850533 -119935922 + (TCG)n Simple_repeat Simple_repeat 2 56 0 187 174 153 122 chr12 23853241 23853339 -119933116 - MIR SINE MIR -42 220 120 615 294 32 0 chr12 23854027 23854214 -119932241 + MIR SINE MIR 1 193 -69 188 346 168 0 chr12 23854241 23854342 -119932113 - L2 LINE L2 -40 3232 3115 24 53 0 0 chr12 23854837 23854875 -119931580 + AT_rich Low_complexity Low_complexity 1 38 0 219 330 102 8 chr12 23855529 23855647 -119930808 - L2 LINE L2 -224 3048 2920 2172 106 7 7 chr12 23855697 23856019 -119930436 - AluSx SINE Alu 0 312 1 422 250 22 101 chr12 23856134 23856286 -119930169 - MER112 DNA MER1_type -6 254 130 2507 61 0 0 chr12 23856286 23856581 -119929874 - AluSp SINE Alu -16 297 3 422 250 22 101 chr12 23856581 23856696 -119929759 - MER112 DNA MER1_type -130 130 8 208 331 101 14 chr12 23856709 23856848 -119929607 - L2 LINE L2 -687 2627 2477 311 222 151 32 chr12 23857442 23857568 -119928887 - L1ME4a LINE L1 -187 5934 5794 1600 165 30 20 chr12 23857608 23857905 -119928550 - AluJo SINE Alu -7 305 6 1228 241 79 18 chr12 23857915 23858359 -119928096 - L1ME3A LINE L1 -222 6017 5547 749 112 0 0 chr12 23858368 23858475 -119927980 - AluSq/x SINE Alu -206 107 1 1873 254 160 25 chr12 23858475 23859582 -119926873 - L1ME3A LINE L1 -1331 4884 3659 232 184 184 10 chr12 23859604 23859702 -119926753 - L1ME3A LINE L1 -2827 3388 3274 516 161 34 2 chr12 23859705 23859821 -119926634 - AluJb SINE Alu -16 296 185 189 0 0 0 chr12 23859821 23859842 -119926613 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 516 161 34 2 chr12 23859842 23859961 -119926494 - AluJb SINE Alu -127 185 1 245 240 40 10 chr12 23859987 23860087 -119926368 - L1ME3A LINE L1 -2982 3233 3131 255 198 21 42 chr12 23860686 23860782 -119925673 - L1ME3A LINE L1 -3197 3018 2925 35 41 0 0 chr12 23860793 23860842 -119925613 + AT_rich Low_complexity Low_complexity 1 49 0 448 298 7 0 chr12 23860867 23861018 -119925437 - L1ME3A LINE L1 -3319 2896 2745 1340 169 69 15 chr12 23861031 23861291 -119925164 + AluJb SINE Alu 30 303 -9 818 235 38 1 chr12 23861459 23861688 -119924767 - L1ME3A LINE L1 -3587 2628 2384 1606 164 19 0 chr12 23861714 23861982 -119924473 - MER2 DNA MER2_type -1 344 72 355 193 0 72 chr12 23862025 23862108 -119924347 - MER2 DNA MER2_type -261 84 8 1121 258 28 70 chr12 23862116 23862504 -119923951 - L1ME3A LINE L1 -5988 408 37 334 259 135 39 chr12 23862764 23863127 -119923328 + HAL1 LINE L1 2002 2399 -108 2210 118 0 0 chr12 23863362 23863658 -119922797 - AluSx SINE Alu -16 296 1 291 326 79 26 chr12 23863939 23864206 -119922249 - L1MC5 LINE L1 -173 7788 7508 641 176 53 15 chr12 23864322 23864453 -119922002 - AluSq/x SINE Alu -176 136 1 2147 93 17 0 chr12 23864501 23864790 -119921665 + AluSq SINE Alu 1 294 -19 363 246 52 45 chr12 23865006 23865140 -119921315 - L1MC5 LINE L1 -818 7143 7009 26 74 0 0 chr12 23865609 23865663 -119920792 + AT_rich Low_complexity Low_complexity 1 54 0 858 230 72 8 chr12 23865711 23865946 -119920509 - MIR SINE MIR -11 251 2 1634 190 43 30 chr12 23866200 23866683 -119919772 - MER90 LTR ERV1 -1 613 79 21 36 0 0 chr12 23866843 23866871 -119919584 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 23868281 23868303 -119918152 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr12 23869256 23869279 -119917176 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr12 23869544 23869566 -119916889 + AT_rich Low_complexity Low_complexity 1 22 0 343 177 186 40 chr12 23869697 23869821 -119916634 - Charlie1 DNA MER1_type 0 2761 2620 * 971 246 58 9 chr12 23869806 23870030 -119916425 - Charlie1 DNA MER1_type -2525 236 2 22 0 0 0 chr12 23870092 23870114 -119916341 + AT_rich Low_complexity Low_complexity 1 22 0 1662 148 21 0 chr12 23870688 23870978 -119915477 - L1MA4 LINE L1 -5 6295 6000 207 278 83 28 chr12 23871463 23871535 -119914920 - L2 LINE L2 -1007 2307 2232 6250 182 27 40 chr12 23873160 23875796 -119910659 - L1MC1 LINE L1 -1 6332 3740 37 39 0 0 chr12 23875802 23875853 -119910602 + AT_rich Low_complexity Low_complexity 1 51 0 4219 196 31 32 chr12 23876010 23876045 -119910410 - L1MB2 LINE L1 -4 6167 6133 2136 201 37 61 chr12 23876045 23876668 -119909787 - LTR9 LTR ERV1 0 612 5 4219 196 31 32 chr12 23876668 23876789 -119909666 - L1MB2 LINE L1 -38 6133 6013 1995 99 13 16 chr12 23876789 23877092 -119909363 - AluSx SINE Alu -10 302 1 4219 196 31 32 chr12 23877092 23878838 -119907617 - L1MB2 LINE L1 -158 6013 4269 1034 209 13 5 chr12 23879068 23879368 -119907087 + MLT1A1 LTR MaLR 1 365 0 2064 102 10 7 chr12 23880081 23880374 -119906081 - AluSq SINE Alu -19 294 1 2320 109 0 0 chr12 23880431 23880743 -119905712 - AluSq SINE Alu -1 312 1 183 386 48 35 chr12 23880860 23881005 -119905450 - MIR3 SINE MIR -12 196 50 206 231 0 0 chr12 23882103 23882142 -119904313 + (TG)n Simple_repeat Simple_repeat 1 39 0 602 296 109 87 chr12 23882480 23882929 -119903526 - MLT1K LTR MaLR -41 547 89 546 262 28 21 chr12 23883080 23883221 -119903234 + MER5B DNA MER1_type 2 143 -35 551 221 79 57 chr12 23883221 23883564 -119902891 - MER31A-int LTR ERV1 -4507 429 22 2334 143 70 15 chr12 23883601 23884061 -119902394 - MER31A LTR ERV1 0 485 1 621 226 81 68 chr12 23884596 23884817 -119901638 + MIR SINE MIR 3 226 -36 189 0 0 0 chr12 23885141 23885162 -119901293 + (A)n Simple_repeat Simple_repeat 1 21 0 30 45 0 0 chr12 23885748 23885792 -119900663 + AT_rich Low_complexity Low_complexity 1 44 0 198 261 0 0 chr12 23885808 23885854 -119900601 + MIR SINE MIR 104 149 -113 2109 109 0 62 chr12 23887174 23887494 -119898961 - AluSq SINE Alu -13 300 1 1710 168 10 29 chr12 23887494 23887804 -119898651 - AluJo SINE Alu -8 304 1 26 0 0 0 chr12 23889260 23889286 -119897169 + AT_rich Low_complexity Low_complexity 1 26 0 237 427 0 19 chr12 23890206 23890309 -119896146 + MIR SINE MIR 20 120 -142 282 332 39 33 chr12 23890329 23890489 -119895966 + MER5B DNA MER1_type 15 184 -5 846 242 47 5 chr12 23890627 23890838 -119895617 - MER58A DNA MER1_type -1 223 4 183 80 0 0 chr12 23891881 23891906 -119894549 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr12 23892061 23892083 -119894372 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 23893623 23893644 -119892811 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 23893844 23893872 -119892583 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr12 23894213 23894236 -119892219 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr12 23894419 23894445 -119892010 + AT_rich Low_complexity Low_complexity 1 26 0 555 137 0 0 chr12 23894841 23894936 -119891519 + FLAM_C SINE Alu 48 142 -1 27 29 0 0 chr12 23894981 23895015 -119891440 + AT_rich Low_complexity Low_complexity 1 34 0 28 61 0 0 chr12 23895076 23895125 -119891330 + AT_rich Low_complexity Low_complexity 1 49 0 2603 36 0 10 chr12 23896663 23896970 -119889485 + AluY SINE Alu 1 304 -7 226 272 117 19 chr12 23897027 23897130 -119889325 - MIR SINE MIR -50 212 100 26 0 0 0 chr12 23897477 23897503 -119888952 + AT_rich Low_complexity Low_complexity 1 26 0 553 105 0 0 chr12 23898137 23898213 -119888242 + AluSg/x SINE Alu 216 291 -19 468 252 39 10 chr12 23898934 23899037 -119887418 + L2 LINE L2 3208 3313 0 1467 173 52 24 chr12 23900178 23900467 -119885988 - AluJb SINE Alu -15 297 1 1701 184 3 7 chr12 23900469 23900763 -119885692 - AluJo SINE Alu -19 293 1 7876 87 6 3 chr12 23901120 23903015 -119883440 - L1PA7 LINE L1 -4 6150 4255 389 306 33 22 chr12 23903338 23903521 -119882934 + L2 LINE L2 1802 1986 -1328 1954 205 35 73 chr12 23904129 23904705 -119881750 - MLT2B3 LTR ERVL 0 554 1 1940 142 30 0 chr12 23904802 23905098 -119881357 - AluSx SINE Alu -7 305 1 5747 193 65 21 chr12 23906604 23907993 -119878462 - Charlie1a DNA MER1_type -1 1454 1 285 211 118 0 chr12 23908167 23908243 -119878212 - MIR SINE MIR -101 161 77 651 130 89 16 chr12 23908360 23908483 -119877972 - FRAM SINE Alu -14 162 31 389 314 34 19 chr12 23908568 23908739 -119877716 - MIR SINE MIR -55 153 37 252 0 0 0 chr12 23911953 23911981 -119874474 + (T)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr12 23914009 23914037 -119872418 + AT_rich Low_complexity Low_complexity 1 28 0 2044 231 82 75 chr12 23916290 23916737 -119869718 - L1MC4 LINE L1 -502 7540 7083 210 37 0 0 chr12 23916737 23916764 -119869691 + (CCTA)n Simple_repeat Simple_repeat 1 27 0 2044 231 82 75 chr12 23916764 23917182 -119869273 - L1MC4 LINE L1 -959 7083 6669 250 35 0 0 chr12 23917226 23917255 -119869200 - U2 snRNA snRNA -152 36 8 3549 147 210 90 chr12 23917395 23918705 -119867750 - pTR5 LTR ERV1 0 1683 31 900 197 107 122 chr12 23918705 23919215 -119867240 - L1MD3 LINE L1 -476 7519 6842 460 162 0 0 chr12 23919217 23919291 -119867164 + LTR9 LTR ERV1 1 74 -538 1265 138 5 15 chr12 23919296 23919492 -119866963 + AluSx SINE Alu 11 204 -108 257 67 0 22 chr12 23920277 23920322 -119866133 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 351 253 58 95 chr12 23920888 23921078 -119865377 - MIR SINE MIR 0 262 80 266 246 16 0 chr12 23921517 23921578 -119864877 - L2 LINE L2 -6 3307 3246 425 184 43 0 chr12 23921660 23921823 -119864632 + (TA)n Simple_repeat Simple_repeat 2 171 0 217 183 17 50 chr12 23921828 23921888 -119864567 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 1523 162 35 28 chr12 23922008 23922292 -119864163 - AluJb SINE Alu -26 286 1 5402 86 116 37 chr12 23923212 23924292 -119862163 - MER11A LTR ERVK 0 1266 1 4115 86 9 0 chr12 23924340 23924889 -119861566 + MER41A LTR ERV1 1 554 0 5476 153 131 4 chr12 23924976 23925941 -119860514 + MER41A-int LTR ERV1 3 1089 -4857 351 0 0 0 chr12 23925941 23925980 -119860475 + (TG)n Simple_repeat Simple_repeat 2 40 0 11258 151 60 35 chr12 23925980 23926282 -119860173 + MER41A-int LTR ERV1 1359 1652 -3363 2352 86 0 3 chr12 23926282 23926584 -119859871 - AluSc SINE Alu -8 301 1 11258 151 60 35 chr12 23926584 23927485 -119858970 + MER41A-int LTR ERV1 1652 2530 -2485 2155 140 0 0 chr12 23927485 23927792 -119858663 - AluSx SINE Alu -5 307 1 11258 151 60 35 chr12 23927792 23929059 -119857396 + MER41A-int LTR ERV1 2530 4384 -631 2803 95 5 3 chr12 23931805 23932193 -119854262 + MER41A LTR ERV1 166 554 0 308 336 45 37 chr12 23932811 23932945 -119853510 - L2 LINE L2 -15 3298 3164 680 91 30 0 chr12 23932945 23933044 -119853411 + MER51D LTR ERV1 482 583 -74 684 273 128 37 chr12 23933488 23934175 -119852280 - L1ME LINE L1 -397 5765 5009 2642 175 77 39 chr12 23934220 23935409 -119851046 - L1MC2 LINE L1 -185 6159 5016 1867 133 0 0 chr12 23935409 23935665 -119850790 - AluSx SINE Alu -14 298 43 2642 175 77 39 chr12 23935665 23935701 -119850754 - L1MC2 LINE L1 -1328 5016 4983 1921 150 17 0 chr12 23935701 23935994 -119850461 - AluJo SINE Alu -14 298 1 2642 175 77 39 chr12 23935994 23936169 -119850286 - L1MC2 LINE L1 -1361 4983 4550 500 340 58 19 chr12 23936178 23936696 -119849759 - L1ME LINE L1 -1112 5034 4497 2402 77 3 0 chr12 23937018 23937329 -119849126 + AluSx SINE Alu 1 312 0 1384 216 51 25 chr12 24037851 24038207 -119748248 + MLT1A1 LTR MaLR 1 365 0 5598 77 1 0 chr12 24038924 24039661 -119746794 + L1PA5 LINE L1 5413 6150 -4 24 91 0 0 chr12 24041866 24041932 -119744523 + AT_rich Low_complexity Low_complexity 1 66 0 27 29 0 0 chr12 24045051 24045085 -119741370 + AT_rich Low_complexity Low_complexity 1 34 0 305 322 63 38 chr12 24045189 24045428 -119741027 + MIR SINE MIR 18 262 0 1538 204 0 35 chr12 24045457 24045746 -119740709 + AluJo SINE Alu 7 285 -27 21 36 0 0 chr12 24045746 24045774 -119740681 + AT_rich Low_complexity Low_complexity 1 28 0 535 264 49 25 chr12 24045907 24046070 -119740385 - MIR SINE MIR 0 262 96 2432 297 80 41 chr12 24046412 24048350 -119738105 - L1MC4 LINE L1 -347 7541 5439 12332 209 39 27 chr12 24048351 24052151 -119734304 + L1MA9 LINE L1 2331 6177 -371 339 287 48 41 chr12 24052285 24052631 -119733824 + L1 LINE L1 4885 5233 -913 519 263 19 19 chr12 24052681 24052837 -119733618 - L1MA9 LINE L1 -38 6274 6119 1429 261 126 41 chr12 24053115 24053981 -119732474 - L2 LINE L2 0 3313 2390 1186 150 5 39 chr12 24053981 24054188 -119732267 - MLT1B LTR MaLR 0 390 191 706 112 0 0 chr12 24054246 24054344 -119732111 - AluSc SINE Alu -84 225 128 1235 280 131 18 chr12 24054456 24054765 -119731690 - L2 LINE L2 -1159 2155 1882 2341 101 0 0 chr12 24054765 24055073 -119731382 + AluY SINE Alu 1 308 -3 1235 280 131 18 chr12 24055073 24055327 -119731128 - L2 LINE L2 -1432 1882 1528 277 227 23 11 chr12 24055348 24055436 -119731019 + (TA)n Simple_repeat Simple_repeat 1 89 0 243 0 0 0 chr12 24055928 24055955 -119730500 + (TA)n Simple_repeat Simple_repeat 1 27 0 254 339 23 0 chr12 24056079 24056209 -119730246 + L2 LINE L2 2475 2607 -707 36 23 0 0 chr12 24058251 24058294 -119728161 + AT_rich Low_complexity Low_complexity 1 43 0 1902 136 3 35 chr12 24059450 24059766 -119726689 + AluSg SINE Alu 1 306 -4 1956 60 134 0 chr12 24061140 24061408 -119725047 - AluY SINE Alu -6 305 2 2674 40 0 0 chr12 24061418 24061743 -119724712 - L1PA3 LINE L1 0 6155 5831 8786 36 3 0 chr12 24061743 24062819 -119723636 + L1P LINE L1 1788 2866 -3280 1920 132 0 4 chr12 24063008 24063312 -119723143 - AluSx SINE Alu 0 308 6 207 0 0 0 chr12 24064049 24064072 -119722383 + (TG)n Simple_repeat Simple_repeat 1 23 0 39 38 0 0 chr12 24064118 24064171 -119722284 + AT_rich Low_complexity Low_complexity 1 53 0 2125 121 7 0 chr12 24064322 24064619 -119721836 - AluSx SINE Alu -13 299 1 212 361 68 0 chr12 24064918 24065051 -119721404 - MIR SINE MIR -29 233 92 3167 157 41 5 chr12 24065162 24065742 -119720713 + LTR26 LTR ERV1 3 603 0 745 274 25 5 chr12 24066403 24066600 -119719855 - MER58A DNA MER1_type 0 224 24 181 324 95 0 chr12 24066621 24066695 -119719760 - MIR SINE MIR -76 186 106 438 273 61 18 chr12 24066696 24066861 -119719594 - LTR33A LTR ERVL 0 523 352 554 125 12 0 chr12 24068018 24068098 -119718357 + Tigger2 DNA MER2_type 1 81 -2637 1030 141 12 0 chr12 24068203 24068366 -119718089 - MSTA LTR MaLR -263 165 1 729 333 14 18 chr12 24068380 24068713 -119717742 + L2 LINE L2 2703 3033 -280 1464 219 128 35 chr12 24068758 24069220 -119717235 + MLT1D LTR MaLR 1 505 0 336 271 118 24 chr12 24069231 24069401 -119717054 + L2 LINE L2 3094 3279 -34 231 204 19 19 chr12 24069417 24069471 -119716984 + GA-rich Low_complexity Low_complexity 4 57 0 200 354 70 25 chr12 24069521 24069679 -119716776 + L3 LINE CR1 1067 1231 -346 2019 102 39 21 chr12 24069747 24070080 -119716375 + L1MA7 LINE L1 5949 6287 -4 3724 145 7 0 chr12 24070125 24070724 -119715731 + L1PB4 LINE L1 5547 6149 -7 209 369 0 15 chr12 24070820 24070885 -119715570 + L3 LINE CR1 1464 1527 -50 893 309 87 38 chr12 24071568 24072509 -119713946 + L1ME3 LINE L1 3416 4402 -1744 702 284 90 28 chr12 24072544 24073044 -119713411 + MLT1G1 LTR MaLR 8 562 -5 410 273 89 30 chr12 24073141 24073478 -119712977 + L1ME3 LINE L1 4699 5055 -1091 328 315 24 16 chr12 24073513 24073640 -119712815 + L1ME3 LINE L1 5265 5378 -786 302 87 0 0 chr12 24073643 24073689 -119712766 + L1ME1 LINE L1 6120 6165 -1 782 270 93 9 chr12 24073693 24074122 -119712333 + L1ME3 LINE L1 5374 5838 -324 3388 104 2 0 chr12 24074205 24074697 -119711758 + L1PA13 LINE L1 5671 6163 0 39407 74 12 8 chr12 24074720 24076521 -119709934 + L1P LINE L1 11 1804 -4342 2892 3 0 0 chr12 24076521 24076831 -119709624 - AluYa5 SINE Alu -1 310 1 39407 74 12 8 chr12 24076831 24080371 -119706084 + L1P LINE L1 1804 5371 -775 300 53 0 0 chr12 24080477 24080515 -119705940 + (TA)n Simple_repeat Simple_repeat 1 38 0 733 206 0 0 chr12 24080532 24080658 -119705797 - FLAM_C SINE Alu -17 126 1 225 0 0 0 chr12 24080695 24080720 -119705735 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1109 280 38 8 chr12 24080990 24081493 -119704962 - L1MEc LINE L1 -4576 1820 1303 43 56 0 0 chr12 24081734 24081805 -119704650 + AT_rich Low_complexity Low_complexity 1 71 0 3956 127 14 13 chr12 24082413 24083043 -119703412 + Tigger2 DNA MER2_type 112 742 -1976 1605 159 4 0 chr12 24083110 24083367 -119703088 + Tigger2 DNA MER2_type 2461 2718 0 590 261 108 30 chr12 24083895 24084090 -119702365 + MIR SINE MIR 6 216 -46 510 270 151 13 chr12 24084090 24084249 -119702206 - MER5A DNA MER1_type 0 189 9 197 260 20 0 chr12 24084251 24084301 -119702154 + MIR SINE MIR 202 252 -10 374 348 14 14 chr12 24085209 24085347 -119701108 + MIR SINE MIR 19 156 -106 290 163 0 0 chr12 24087149 24087198 -119699257 - MLT1H LTR MaLR -461 88 40 208 135 19 19 chr12 24087611 24087663 -119698792 + (TA)n Simple_repeat Simple_repeat 1 52 0 296 306 133 20 chr12 24088027 24088223 -119698232 + ERVL LTR ERVL 788 1005 -4759 471 18 0 0 chr12 24088238 24088294 -119698161 + (TG)n Simple_repeat Simple_repeat 2 57 0 795 337 68 49 chr12 24088340 24088515 -119697940 + ERVL LTR ERVL 1087 1257 -4507 791 298 9 0 chr12 24088515 24088733 -119697722 + MER58A DNA MER1_type 5 224 0 795 337 68 49 chr12 24088733 24089172 -119697283 + ERVL LTR ERVL 1257 1713 -4051 985 286 29 25 chr12 24089221 24089536 -119696919 + ERVL LTR ERVL 1823 2138 -3626 352 312 50 21 chr12 24089562 24089898 -119696557 + ERVL LTR ERVL 3274 3694 -2070 958 243 115 10 chr12 24090187 24090492 -119695963 - L2 LINE L2 -470 2844 2508 22 56 0 0 chr12 24090801 24090837 -119695618 + AT_rich Low_complexity Low_complexity 1 36 0 1647 184 40 58 chr12 24090863 24091260 -119695195 + MLT1B LTR MaLR 1 390 0 287 320 194 8 chr12 24091569 24091816 -119694639 + L2 LINE L2 3005 3297 -16 1191 284 52 50 chr12 24092264 24092749 -119693706 + LTR33 LTR ERVL 31 516 -5 183 361 98 33 chr12 24092823 24092945 -119693510 - L2 LINE L2 -5 3267 3138 1649 183 70 23 chr12 24093644 24093988 -119692467 + MLT1A1 LTR MaLR 6 365 0 2146 138 43 0 chr12 24094337 24094686 -119691769 - THE1B LTR MaLR 0 364 1 184 299 0 103 chr12 24095313 24095410 -119691045 + L2 LINE L2 3227 3313 0 26 0 0 0 chr12 24095468 24095494 -119690961 + AT_rich Low_complexity Low_complexity 1 26 0 13727 105 19 2 chr12 24095532 24098389 -119688066 + L1PA8 LINE L1 3281 6171 -1 184 250 0 50 chr12 24098794 24098874 -119687581 + L2 LINE L2 3015 3090 -182 248 279 117 46 chr12 24099922 24100119 -119686336 + MIR SINE MIR 48 258 -4 369 296 78 9 chr12 24100958 24101073 -119685382 - L2 LINE L2 0 3272 3150 180 0 0 0 chr12 24101701 24101721 -119684734 + (A)n Simple_repeat Simple_repeat 1 20 0 2478 215 46 9 chr12 24101721 24102804 -119683651 + L1M4 LINE L1 4633 5760 -424 429 240 0 0 chr12 24102810 24102910 -119683545 - L1MB5 LINE L1 -289 5885 5786 2241 327 78 41 chr12 24102915 24104262 -119682193 - L2 LINE L2 -1241 2073 677 453 317 58 36 chr12 24104290 24104514 -119681941 - L2 LINE L2 -2886 428 200 3558 31 0 0 chr12 24106126 24106550 -119679905 - L1PA4 LINE L1 -1545 4601 4178 7476 28 6 0 chr12 24106550 24108120 -119678335 + L1PA4 LINE L1 4581 6151 -4 468 245 16 54 chr12 24108367 24108551 -119677904 - MER104 DNA MER2_type -1 179 3 272 416 72 0 chr12 24108578 24108703 -119677752 + L2 LINE L2 3139 3272 0 1515 239 65 2 chr12 24109042 24109489 -119676966 - Charlie1b DNA MER1_type -48 475 1 202 217 87 0 chr12 24109678 24109724 -119676731 + MIR SINE MIR 157 206 -56 826 276 119 33 chr12 24109863 24110284 -119676171 + L2 LINE L2 1920 2376 -938 268 290 81 97 chr12 24110273 24110708 -119675747 + L2 LINE L2 2818 3245 -68 * 218 331 74 16 chr12 24110711 24110832 -119675623 + L3b LINE CR1 1378 1505 -78 2452 53 3 0 chr12 24111939 24112240 -119674215 + AluY SINE Alu 1 302 -9 571 353 55 46 chr12 24113047 24113523 -119672932 - LTR67 LTR ERVL -16 541 62 337 221 11 63 chr12 24113572 24113667 -119672788 - Tigger5 DNA MER2_type 0 2323 2234 2109 109 3 3 chr12 24113802 24114118 -119672337 + AluSx SINE Alu 3 318 0 2002 102 41 10 chr12 24115367 24115660 -119670795 - AluSg SINE Alu -6 304 3 196 233 12 128 chr12 24115919 24116005 -119670450 + MIR SINE MIR 82 157 -105 437 277 25 0 chr12 24116678 24116797 -119669658 + MIR SINE MIR 99 220 -42 285 318 45 9 chr12 24116908 24116948 -119669507 + MER81 DNA DNA 1 38 -76 348 24 0 0 chr12 24116948 24116989 -119669466 + (TTA)n Simple_repeat Simple_repeat 2 42 0 285 318 45 9 chr12 24116989 24117058 -119669397 + MER81 DNA DNA 38 114 0 296 441 14 0 chr12 24117426 24117571 -119668884 + L2 LINE L2 3121 3267 -5 182 318 47 73 chr12 24117645 24117733 -119668722 - L2 LINE L2 -967 2347 2258 279 0 0 0 chr12 24117733 24117764 -119668691 + (TG)n Simple_repeat Simple_repeat 2 32 0 182 318 47 73 chr12 24117764 24117867 -119668588 - L2 LINE L2 -1056 2258 2161 3106 143 19 17 chr12 24117891 24118465 -119667990 - L1MC3 LINE L1 0 7785 7211 262 276 81 8 chr12 24119021 24119144 -119667311 - MLT1I LTR MaLR -17 392 261 405 258 0 0 chr12 24119150 24119247 -119667208 + MER99 DNA DNA 6 102 -726 657 227 0 0 chr12 24119391 24119545 -119666910 + L1MB7 LINE L1 6019 6172 -12 375 177 28 50 chr12 24119639 24119820 -119666635 + (TA)n Simple_repeat Simple_repeat 1 177 0 288 231 33 0 chr12 24119869 24119960 -119666495 + (TA)n Simple_repeat Simple_repeat 1 94 0 1127 180 72 14 chr12 24120444 24120666 -119665789 + MER46A DNA MER2_type 2 236 0 338 332 108 43 chr12 24120861 24121231 -119665224 - L1MEc LINE L1 -4387 2334 1941 250 257 14 0 chr12 24121246 24121320 -119665135 - L1M2 LINE L1 -4393 2456 2382 307 274 43 8 chr12 24121353 24121470 -119664985 - L1MEc LINE L1 -4815 1725 1605 226 128 0 21 chr12 24121580 24121627 -119664828 - L1MB7 LINE L1 -15 6169 6124 * 1534 162 14 3 chr12 24121618 24121902 -119664553 + L1MB3 LINE L1 5856 6142 -41 * 24078 137 11 15 chr12 24121901 24123138 -119663317 + L1PA8A LINE L1 2 1243 -5203 252 59 0 0 chr12 24123138 24123172 -119663283 + (CAA)n Simple_repeat Simple_repeat 3 36 0 24078 137 11 15 chr12 24123172 24128315 -119658140 + L1PA8A LINE L1 1243 6419 -27 2035 118 17 0 chr12 24128439 24128728 -119657727 - AluSx SINE Alu -18 294 1 269 221 26 13 chr12 24129350 24129427 -119657028 - MER103 DNA DNA -72 94 17 22 80 0 0 chr12 24129588 24129638 -119656817 + AT_rich Low_complexity Low_complexity 1 50 0 8201 171 13 27 chr12 24129739 24131965 -119654490 + L1PA15-16 LINE L1 1 2086 -4763 1956 145 26 19 chr12 24131965 24132275 -119654180 + AluSx SINE Alu 1 312 0 8201 171 13 27 chr12 24132275 24132477 -119653978 + L1PA15-16 LINE L1 2086 2289 -4560 3784 217 50 39 chr12 24132924 24134831 -119651624 + L1PA16 LINE L1 1266 3197 -3600 9664 162 38 8 chr12 24134832 24137944 -119648511 + L1MA2 LINE L1 3112 6304 0 10248 201 23 11 chr12 24137947 24141356 -119645099 + L1PA16 LINE L1 3180 6627 -190 610 118 9 9 chr12 24141358 24141468 -119644987 + L1PA16 LINE L1 6708 6817 0 362 348 50 0 chr12 24141577 24141738 -119644717 - MIR SINE MIR -26 236 68 484 220 21 71 chr12 24143153 24143294 -119643161 + MLT1B LTR MaLR 1 134 -240 201 162 0 0 chr12 24143454 24143491 -119642964 + A-rich Low_complexity Low_complexity 1 37 0 818 177 33 65 chr12 24143492 24143550 -119642905 + MLT1B LTR MaLR 167 225 -165 2247 131 120 5 chr12 24143550 24143933 -119642522 - MSTA LTR MaLR -1 427 1 818 177 33 65 chr12 24143933 24144089 -119642366 + MLT1B LTR MaLR 225 390 0 510 288 16 51 chr12 24144090 24144401 -119642054 - L1MD2 LINE L1 -252 5910 5609 462 235 127 58 chr12 24144426 24144686 -119641769 - MLT1J1 LTR MaLR -166 280 3 258 136 0 0 chr12 24144690 24144734 -119641721 + (TG)n Simple_repeat Simple_repeat 2 45 0 339 282 80 31 chr12 24144808 24145117 -119641338 - L1MD2 LINE L1 -748 5398 5159 1496 172 73 3 chr12 24145690 24145993 -119640462 - MER7A DNA MER2_type 0 346 25 1658 232 50 71 chr12 24147341 24147396 -119639059 - MLT1E LTR MaLR -11 582 527 1998 141 0 0 chr12 24147396 24147702 -119638753 + AluSx SINE Alu 1 306 0 1658 232 50 71 chr12 24147702 24147977 -119638478 - MLT1E LTR MaLR -66 527 266 3761 122 2 2 chr12 24147977 24148503 -119637952 + MER1A DNA MER1_type 2 527 0 1658 232 50 71 chr12 24148503 24148764 -119637691 - MLT1E LTR MaLR -327 266 1 2817 96 0 0 chr12 24148892 24149256 -119637199 + THE1B LTR MaLR 1 364 0 1669 174 6 39 chr12 24149420 24149731 -119636724 - AluJb SINE Alu -11 301 1 22 0 0 0 chr12 24150020 24150042 -119636413 + AT_rich Low_complexity Low_complexity 1 22 0 2573 62 0 0 chr12 24150361 24150665 -119635790 - AluY SINE Alu -7 304 1 821 279 40 4 chr12 24150700 24150947 -119635508 - MIR SINE MIR -1 261 6 2261 132 0 0 chr12 24151028 24151338 -119635117 - AluSx SINE Alu 0 312 3 2754 144 35 19 chr12 24151599 24152079 -119634376 + LTR45B LTR ERV1 2 489 0 23 54 0 0 chr12 24152967 24153004 -119633451 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr12 24153243 24153266 -119633189 + AT_rich Low_complexity Low_complexity 1 23 0 221 350 219 0 chr12 24153481 24153604 -119632851 - MIR3 SINE MIR -43 165 16 231 206 68 0 chr12 24153943 24154016 -119632439 + L1ME LINE L1 5675 5752 -369 21 0 0 0 chr12 24154046 24154067 -119632388 + AT_rich Low_complexity Low_complexity 1 21 0 2148 113 31 0 chr12 24154226 24154519 -119631936 - AluSg1 SINE Alu -7 302 1 21 57 0 0 chr12 24154903 24154938 -119631517 + AT_rich Low_complexity Low_complexity 1 35 0 2266 254 3 54 chr12 24156084 24156785 -119629670 + LTR8 LTR ERV1 27 691 0 1134 184 63 5 chr12 24156810 24157016 -119629439 - AluJb SINE Alu -21 291 74 246 325 50 12 chr12 24157181 24157261 -119629194 - L2 LINE L2 -39 3233 3151 1845 146 0 20 chr12 24157261 24157556 -119628899 + AluJb SINE Alu 1 289 -23 257 301 43 43 chr12 24157807 24157900 -119628555 - MIR SINE MIR -150 112 20 911 168 22 6 chr12 24157919 24158098 -119628357 - L1PB2 LINE L1 -4 6147 5966 693 174 0 0 chr12 24158115 24158230 -119628225 - AluSg1 SINE Alu 0 309 195 550 167 10 0 chr12 24158230 24158326 -119628129 - AluSg1 SINE Alu -212 97 1 474 194 8 32 chr12 24158335 24158459 -119627996 - L1PB2 LINE L1 -185 5966 5846 875 97 0 0 chr12 24158560 24158674 -119627781 - AluSg/x SINE Alu -5 307 194 649 120 11 0 chr12 24158674 24158766 -119627689 - AluSg1 SINE Alu -216 93 1 3131 86 4 25 chr12 24158766 24159244 -119627211 - L1PB2 LINE L1 -176 5975 5508 280 276 66 72 chr12 24159399 24159580 -119626875 - MIR3 SINE MIR -14 194 15 2434 181 71 50 chr12 24160008 24160172 -119626283 - MER92B LTR ERV1 0 636 477 2221 124 0 0 chr12 24160172 24160470 -119625985 - AluSx SINE Alu -14 298 1 2434 181 71 50 chr12 24160470 24160928 -119625527 - MER92B LTR ERV1 -159 477 1 257 143 0 0 chr12 24162995 24163037 -119623418 - MER4D LTR ERV1 -586 286 245 5187 122 19 5 chr12 24163042 24163873 -119622582 + MER4D LTR ERV1 30 872 0 3337 72 0 18 chr12 24164131 24164587 -119621868 - LTR7 LTR ERV1 -2 448 1 1797 269 5 58 chr12 24164587 24164999 -119621456 - HERVH LTR ERV1 0 7713 7324 1232 133 0 60 chr12 24164999 24165233 -119621222 - HERVH LTR ERV1 -1894 5819 5600 2871 130 5 2 chr12 24165234 24165846 -119620609 - HERVH LTR ERV1 -2564 5149 4488 5244 116 17 0 chr12 24165848 24166688 -119619767 - HERVH LTR ERV1 -3720 3993 3140 * 15474 95 11 24 chr12 24166667 24169452 -119617003 - HERVH LTR ERV1 -4718 2995 1 3434 71 16 18 chr12 24169454 24169903 -119616552 - LTR7 LTR ERV1 -2 448 1 406 199 0 59 chr12 24169910 24170063 -119616392 + HsTC2 DNA Tc2 1 1856 -42 946 212 10 5 chr12 24170379 24170582 -119615873 + L1MB8 LINE L1 5970 6173 -5 1078 136 34 0 chr12 24170699 24170875 -119615580 + L1M1 LINE L1 6 187 -7378 2107 123 0 10 chr12 24171404 24171697 -119614758 + AluSx SINE Alu 1 290 -22 182 146 0 24 chr12 24172352 24172393 -119614062 + (GAAAA)n Simple_repeat Simple_repeat 1 40 0 561 122 33 0 chr12 24172404 24172494 -119613961 + MLT1B LTR MaLR 234 326 -64 520 321 144 23 chr12 24172799 24173145 -119613310 - L3 LINE CR1 -44 1533 1146 39937 39 0 0 chr12 24173984 24179513 -119606942 - L1PA4 LINE L1 -3 6152 623 800 82 0 0 chr12 24179511 24179609 -119606846 - L1PA4 LINE L1 -6048 98 1 * 1243 273 72 45 chr12 24179609 24180028 -119606427 - L1M4 LINE L1 -2934 3212 2806 1642 48 0 0 chr12 24180028 24180214 -119606241 - L1PA3 LINE L1 0 6155 5970 1243 273 72 45 chr12 24180214 24180283 -119606172 - L1M4 LINE L1 -3340 2806 2740 1856 139 11 7 chr12 24180283 24180589 -119605866 - AluSq SINE Alu 0 307 1 1243 273 72 45 chr12 24180589 24180967 -119605488 - L1M4 LINE L1 -3406 2740 2320 202 280 0 0 chr12 24231761 24231811 -119554644 + L2 LINE L2 3198 3247 -66 513 0 0 0 chr12 24232287 24232344 -119554111 + (GA)n Simple_repeat Simple_repeat 1 57 0 227 256 222 25 chr12 24233794 24233997 -119552458 + HAL1 LINE L1 2170 2412 -95 22 35 0 0 chr12 24234764 24234793 -119551662 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 24234981 24235002 -119551453 + AT_rich Low_complexity Low_complexity 1 21 0 184 255 59 0 chr12 24235077 24235128 -119551327 - L2 LINE L2 -4 3268 3215 212 333 160 0 chr12 24235888 24235963 -119550492 + L2 LINE L2 3201 3287 -26 404 268 128 0 chr12 24236711 24236875 -119549580 - Tigger3(Golem) DNA MER2_type 0 3037 2853 273 57 0 0 chr12 24238296 24238331 -119548124 + (TC)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr12 24238663 24238684 -119547771 + AT_rich Low_complexity Low_complexity 1 21 0 369 75 0 0 chr12 24238684 24238737 -119547718 + (CA)n Simple_repeat Simple_repeat 2 54 0 216 97 0 0 chr12 24239374 24239405 -119547050 + (CA)n Simple_repeat Simple_repeat 2 32 0 244 333 44 0 chr12 24239406 24239496 -119546959 + MIR SINE MIR 117 210 -52 515 298 79 17 chr12 24239775 24239953 -119546502 - L2 LINE L2 -243 3070 2882 819 287 121 17 chr12 24239962 24240317 -119546138 - L2 LINE L2 -610 2704 2313 293 54 0 0 chr12 24240319 24240356 -119546099 - THE1B LTR MaLR 0 364 328 423 353 40 6 chr12 24241543 24241716 -119544739 + MIR SINE MIR 20 198 -64 211 281 194 56 chr12 24241775 24241971 -119544484 + MIR SINE MIR 6 228 -34 1926 138 45 0 chr12 24242433 24242724 -119543731 - AluJo SINE Alu -8 304 1 1527 225 87 18 chr12 24242943 24243378 -119543077 + MLT1C LTR MaLR 1 465 -2 220 309 172 50 chr12 24243453 24243831 -119542624 + L2 LINE L2 2252 2675 -639 1805 157 3 13 chr12 24243876 24244176 -119542279 + AluJb SINE Alu 2 298 -14 410 238 119 0 chr12 24244311 24244437 -119542018 + MER103 DNA DNA 1 141 -25 758 168 15 0 chr12 24245466 24245597 -119540858 + AluJb SINE Alu 3 135 -177 1743 97 12 8 chr12 24245597 24245856 -119540599 + AluY SINE Alu 1 260 -51 420 37 0 0 chr12 24245897 24245951 -119540504 + (TA)n Simple_repeat Simple_repeat 2 55 0 698 186 12 78 chr12 24245970 24246156 -119540299 + AluJb SINE Alu 145 312 0 187 333 21 21 chr12 24246765 24246858 -119539597 + MIR3 SINE MIR 110 202 -6 185 360 100 26 chr12 24248178 24248517 -119537938 + L2 LINE L2 1716 2079 -1235 1004 263 59 17 chr12 24248561 24248850 -119537605 + MLT1F1 LTR MaLR 1 301 -266 21 57 0 0 chr12 24248850 24248885 -119537570 + AT_rich Low_complexity Low_complexity 1 35 0 362 188 0 0 chr12 24248885 24248954 -119537501 + MLT1F1 LTR MaLR 491 559 -8 293 139 0 0 chr12 24249020 24249063 -119537392 + MLT1F1 LTR MaLR 517 559 -8 295 346 79 20 chr12 24249143 24249397 -119537058 + L2 LINE L2 2148 2416 -898 307 306 39 50 chr12 24250724 24250904 -119535551 - MIR SINE MIR -70 192 15 2334 206 21 22 chr12 24252394 24252999 -119533456 + MLT2B3 LTR ERVL 1 520 0 24 32 0 0 chr12 24253614 24253645 -119532810 + AT_rich Low_complexity Low_complexity 1 31 0 270 267 0 99 chr12 24254310 24254411 -119532044 + MIR SINE MIR 37 128 -80 193 327 115 39 chr12 24255466 24255622 -119530833 - MIR SINE MIR -36 226 59 585 345 170 22 chr12 24256819 24257314 -119529141 + L2 LINE L2 1851 2418 -896 25 0 0 0 chr12 24257696 24257721 -119528734 + AT_rich Low_complexity Low_complexity 1 25 0 2385 76 0 3 chr12 24257726 24258028 -119528427 + AluY SINE Alu 1 301 -10 21 0 0 0 chr12 24258160 24258181 -119528274 + AT_rich Low_complexity Low_complexity 1 21 0 2100 129 0 13 chr12 24258223 24258540 -119527915 - AluSq SINE Alu 0 313 1 1231 247 87 78 chr12 24258618 24258840 -119527615 + L2 LINE L2 2475 2694 -619 1854 112 0 4 chr12 24258840 24259090 -119527365 + AluSg SINE Alu 35 283 -27 1231 247 87 78 chr12 24259090 24259688 -119526767 + L2 LINE L2 2694 3313 0 736 341 70 24 chr12 24261233 24261602 -119524853 + L2 LINE L2 2928 3313 0 305 336 126 8 chr12 24261606 24261844 -119524611 + L2 LINE L2 2182 2447 -867 243 0 0 0 chr12 24263675 24263688 -119522767 + (CA)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chr12 24263688 24263715 -119522740 + (CA)n Simple_repeat Simple_repeat 2 28 0 2090 108 7 19 chr12 24263729 24264036 -119522419 - AluSx SINE Alu -9 303 1 2172 120 10 0 chr12 24264377 24264685 -119521770 + AluY SINE Alu 1 311 0 790 152 129 29 chr12 24264819 24264990 -119521465 + MER5A DNA MER1_type 2 189 0 303 104 0 0 chr12 24265470 24265518 -119520937 + (CAAAG)n Simple_repeat Simple_repeat 3 50 0 29 28 0 0 chr12 24268424 24268460 -119517995 + AT_rich Low_complexity Low_complexity 1 36 0 270 56 0 0 chr12 24271260 24271296 -119515159 + (TG)n Simple_repeat Simple_repeat 2 37 0 1603 236 86 52 chr12 24272158 24272748 -119513707 + LTR9 LTR ERV1 1 610 -2 34 0 0 0 chr12 24273449 24273483 -119512972 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr12 24273683 24273711 -119512744 + AT_rich Low_complexity Low_complexity 1 28 0 223 355 130 0 chr12 24273789 24273927 -119512528 - MIR SINE MIR -60 202 47 22 35 0 0 chr12 24275651 24275680 -119510775 + AT_rich Low_complexity Low_complexity 1 29 0 2119 113 0 0 chr12 24276442 24276750 -119509705 + AluSx SINE Alu 1 308 0 250 240 0 0 chr12 24277477 24277527 -119508928 + GA-rich Low_complexity Low_complexity 1 50 0 243 294 49 92 chr12 24278152 24278336 -119508119 + L2 LINE L2 3089 3264 -8 26 0 0 0 chr12 24278419 24278445 -119508010 + AT_rich Low_complexity Low_complexity 1 26 0 739 346 114 18 chr12 24278582 24279084 -119507371 + L2 LINE L2 2762 3313 0 2410 65 13 3 chr12 24279249 24279555 -119506900 + AluY SINE Alu 1 309 -2 676 194 8 0 chr12 24279705 24279839 -119506616 + L1PB4 LINE L1 6022 6156 0 2515 61 0 3 chr12 24282296 24282607 -119503848 - AluY SINE Alu -1 310 1 291 54 0 0 chr12 24284431 24284468 -119501987 + (TA)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr12 24284722 24284744 -119501711 + AT_rich Low_complexity Low_complexity 1 22 0 241 255 0 0 chr12 24286034 24286085 -119500370 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 263 49 24 0 chr12 24287053 24287094 -119499361 + (TA)n Simple_repeat Simple_repeat 2 43 0 203 147 0 0 chr12 24287819 24287853 -119498602 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 231 333 15 0 chr12 24287903 24287969 -119498486 + L2 LINE L2 3242 3308 -5 69 48 0 0 chr12 24289016 24289120 -119497335 + AT_rich Low_complexity Low_complexity 1 104 0 24 0 0 0 chr12 24289523 24289547 -119496908 + AT_rich Low_complexity Low_complexity 1 24 0 837 159 0 0 chr12 24291616 24291769 -119494686 + FLAM_C SINE Alu 2 154 0 21 36 0 0 chr12 24292219 24292247 -119494208 + AT_rich Low_complexity Low_complexity 1 28 0 2366 154 12 12 chr12 24292247 24292471 -119493984 - L1MA7 LINE L1 -270 6021 5795 357 24 0 0 chr12 24292471 24292513 -119493942 + (TG)n Simple_repeat Simple_repeat 2 43 0 2366 154 12 12 chr12 24292513 24292690 -119493765 - L1MA7 LINE L1 -495 5796 5620 23 0 0 0 chr12 24293032 24293055 -119493400 + AT_rich Low_complexity Low_complexity 1 23 0 24 41 0 20 chr12 24293316 24293343 -119493112 + AT_rich Low_complexity Low_complexity 1 28 -20 428 126 115 0 chr12 24293343 24293430 -119493025 - L1MA4 LINE L1 -8 6292 6196 24 41 0 20 chr12 24293430 24293451 -119493004 + AT_rich Low_complexity Low_complexity 28 48 0 439 303 38 0 chr12 24294259 24294391 -119492064 - MER115 DNA AcHobo -27 666 530 3345 176 5 34 chr12 24294391 24295035 -119491420 + L1MB3 LINE L1 5420 6044 -139 541 248 23 0 chr12 24295035 24295164 -119491291 - MER115 DNA AcHobo -157 536 405 218 278 28 14 chr12 24295287 24295359 -119491096 - L2 LINE L2 -274 2998 2926 2176 203 73 32 chr12 24295548 24295918 -119490537 - L1MB7 LINE L1 -294 5890 5484 2178 110 0 7 chr12 24295918 24296218 -119490237 - AluSg SINE Alu -12 298 1 2176 203 73 32 chr12 24296218 24296448 -119490007 - L1MB7 LINE L1 -700 5484 5265 2453 124 14 11 chr12 24296457 24296893 -119489562 - L1PA13 LINE L1 -2 6161 5627 1705 148 13 34 chr12 24297966 24298264 -119488191 + AluJo SINE Alu 14 305 -7 203 258 45 0 chr12 24299799 24299865 -119486590 - MIR SINE MIR -128 134 66 222 167 42 0 chr12 24300142 24300190 -119486265 + (TTG)n Simple_repeat Simple_repeat 2 51 0 462 306 121 35 chr12 24300405 24300637 -119485818 - MIR SINE MIR -1 261 10 200 370 30 0 chr12 24301540 24301640 -119484815 - L2 LINE L2 -554 2760 2658 369 304 78 0 chr12 24302116 24302218 -119484237 - L2 LINE L2 0 3313 3204 1422 156 119 25 chr12 24302425 24302745 -119483710 + L1MB4 LINE L1 5831 6180 0 510 208 16 8 chr12 24304921 24305046 -119481409 + L1MB3 LINE L1 5343 5468 -703 2928 186 5 3 chr12 24305060 24305642 -119480813 + L1MB3 LINE L1 5601 6183 0 22 35 0 0 chr12 24305684 24305713 -119480742 + AT_rich Low_complexity Low_complexity 1 29 0 258 266 211 9 chr12 24305964 24306073 -119480382 + L1ME1 LINE L1 6011 6141 -25 2241 93 3 0 chr12 24306873 24307175 -119479280 - AluSg SINE Alu -7 303 1 186 224 0 0 chr12 24307345 24307394 -119479061 + GA-rich Low_complexity Low_complexity 4 52 0 21 0 0 0 chr12 24307940 24307961 -119478494 + AT_rich Low_complexity Low_complexity 1 21 0 227 299 14 36 chr12 24307985 24308103 -119478352 - MIR SINE MIR -66 142 50 758 117 70 0 chr12 24308108 24308236 -119478219 + MER85 DNA T2_type 2 138 -1 426 328 24 0 chr12 24308834 24309014 -119477441 - MIR SINE MIR -41 221 37 24 0 0 0 chr12 24310069 24310093 -119476362 + AT_rich Low_complexity Low_complexity 1 24 0 233 303 0 53 chr12 24310708 24310784 -119475671 + MIR3 SINE MIR 99 170 -38 21 36 0 0 chr12 24311354 24311382 -119475073 + AT_rich Low_complexity Low_complexity 1 28 0 753 244 94 5 chr12 24311910 24312111 -119474344 - MIR SINE MIR -42 220 2 21 36 0 0 chr12 24314190 24314218 -119472237 + AT_rich Low_complexity Low_complexity 1 28 0 218 214 0 0 chr12 24314879 24314921 -119471534 + GA-rich Low_complexity Low_complexity 3 44 0 970 307 66 39 chr12 24315406 24315843 -119470612 - L2 LINE L2 -2 3311 2863 383 333 71 85 chr12 24316199 24316565 -119469890 - L2 LINE L2 0 3272 2912 486 329 55 79 chr12 24316575 24316635 -119469820 - L2 LINE L2 -559 2755 2695 2438 44 0 25 chr12 24316635 24316956 -119469499 + L1PA5 LINE L1 5841 6153 -1 486 329 55 79 chr12 24316956 24317403 -119469052 - L2 LINE L2 -619 2695 2260 22 0 0 0 chr12 24317429 24317451 -119469004 + AT_rich Low_complexity Low_complexity 1 22 0 232 338 48 14 chr12 24318162 24318307 -119468148 + MIR SINE MIR 111 260 -2 26 64 0 0 chr12 24320471 24320518 -119465937 + AT_rich Low_complexity Low_complexity 1 47 0 201 161 0 0 chr12 24322456 24322487 -119463968 + (CA)n Simple_repeat Simple_repeat 2 32 0 308 286 13 0 chr12 24323178 24323255 -119463200 - L2 LINE L2 -7 3265 3188 245 286 51 20 chr12 24323263 24323361 -119463094 + MER69A DNA AcHobo 1 101 -76 * 357 172 121 121 chr12 24323343 24323541 -119462914 + MER69 DNA AcHobo 2328 2525 -1 1317 330 126 46 chr12 24323550 24324076 -119462379 - L2 LINE L2 -99 3173 2691 2782 3 0 0 chr12 24324076 24324379 -119462076 + AluYa5 SINE Alu 1 303 -8 1317 330 126 46 chr12 24324379 24325133 -119461322 - L2 LINE L2 -581 2691 1791 361 281 34 0 chr12 24325139 24325228 -119461227 + MER5A DNA MER1_type 7 98 -91 1076 274 160 13 chr12 24325229 24325705 -119460750 + MLT1F1 LTR MaLR 5 543 -24 195 322 17 0 chr12 24325732 24325791 -119460664 + MER5A DNA MER1_type 124 183 -6 368 224 0 12 chr12 24325881 24325966 -119460489 - L2 LINE L2 -1625 1689 1606 10815 161 30 30 chr12 24327106 24327433 -119459022 - Tigger1 DNA MER2_type 0 2418 2093 1595 195 26 0 chr12 24327433 24327735 -119458720 - AluJo SINE Alu 0 312 3 10815 161 30 30 chr12 24327735 24329342 -119457113 - Tigger1 DNA MER2_type -325 2093 483 1685 156 28 7 chr12 24329350 24329638 -119456817 - Tigger1 DNA MER2_type -2123 295 2 1617 221 8 28 chr12 24329677 24330075 -119456380 + MLT1B LTR MaLR 1 390 0 260 384 30 44 chr12 24332067 24332270 -119454185 - L2 LINE L2 -528 2786 2587 290 204 32 65 chr12 24332478 24332498 -119453957 - MIR SINE MIR -39 223 204 258 105 0 0 chr12 24332498 24332536 -119453919 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 290 204 32 65 chr12 24332536 24332608 -119453847 - MIR SINE MIR -58 204 134 182 194 0 0 chr12 24333055 24333086 -119453369 + L2 LINE L2 3263 3293 -20 558 325 106 58 chr12 24333380 24334033 -119452422 + L2 LINE L2 1831 2514 -800 719 89 18 0 chr12 24334270 24334382 -119452073 + (TGGA)n Simple_repeat Simple_repeat 1 114 0 1625 177 136 3 chr12 24334809 24335125 -119451330 - MLT1A1 LTR MaLR -7 358 1 471 286 48 0 chr12 24335132 24335258 -119451197 + L2 LINE L2 3141 3272 0 27 0 0 0 chr12 24336261 24336288 -119450167 + AT_rich Low_complexity Low_complexity 1 27 0 244 326 49 36 chr12 24337297 24337474 -119448981 - MIR SINE MIR -61 201 32 308 242 30 85 chr12 24337729 24337894 -119448561 + L1ME4a LINE L1 5681 5836 -1972 234 278 52 17 chr12 24338049 24338164 -119448291 + L1ME4a LINE L1 5914 6032 -89 344 273 120 42 chr12 24338438 24338654 -119447801 + MLT1J LTR MaLR 279 511 0 2158 110 7 7 chr12 24339905 24340215 -119446240 + AluSx SINE Alu 1 310 -2 1897 126 48 0 chr12 24340985 24341279 -119445176 + AluSx SINE Alu 1 308 -4 273 313 75 55 chr12 24341575 24341776 -119444679 - MIR SINE MIR -37 225 21 419 272 24 16 chr12 24342040 24342165 -119444290 - MER119 DNA MER1_type 0 583 458 522 267 92 0 chr12 24342172 24342292 -119444163 - MER119 DNA MER1_type -452 131 1 216 158 0 0 chr12 24343427 24343465 -119442990 + (TA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chr12 24344039 24344067 -119442388 + AT_rich Low_complexity Low_complexity 1 28 0 22 106 0 0 chr12 24345063 24345148 -119441307 + AT_rich Low_complexity Low_complexity 1 85 0 192 40 0 0 chr12 24346041 24346066 -119440389 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 408 351 28 24 chr12 24347114 24347325 -119439130 - L3 LINE CR1 -129 1448 1237 270 305 91 64 chr12 24347339 24347526 -119438929 - MIR3 SINE MIR 0 208 17 245 358 183 12 chr12 24347586 24347826 -119438629 - L3 LINE CR1 -422 1155 875 385 297 7 35 chr12 24347966 24348111 -119438344 - L2 LINE L2 -15 3298 3158 230 267 33 11 chr12 24348360 24348450 -119438005 + GA-rich Low_complexity Low_complexity 1 92 0 271 360 43 12 chr12 24348798 24348959 -119437496 - MIR3 SINE MIR -12 196 31 582 221 39 0 chr12 24349200 24349327 -119437128 - MER82 DNA MER2_type -2 651 520 * 1937 208 16 3 chr12 24349325 24349704 -119436751 - MER82 DNA MER2_type -269 384 1 300 313 83 71 chr12 24350342 24350668 -119435787 - L2 LINE L2 -4 3268 2939 187 338 99 49 chr12 24351384 24352061 -119434394 - L2 LINE L2 -1268 2046 1336 206 121 0 0 chr12 24353358 24353391 -119433064 + (A)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr12 24354961 24354982 -119431473 + AT_rich Low_complexity Low_complexity 1 21 0 899 147 35 6 chr12 24355054 24355224 -119431231 + L1MB7 LINE L1 5991 6165 -19 242 295 13 83 chr12 24355337 24355493 -119430962 - MIR SINE MIR -40 222 78 2252 100 0 0 chr12 24355629 24355930 -119430525 - AluSq SINE Alu -12 301 1 1368 168 42 23 chr12 24356670 24356979 -119429476 + L1 LINE L1 4819 5133 -1013 1140 179 49 0 chr12 24356976 24357199 -119429256 + L1MA9 LINE L1 6040 6273 -39 * 259 309 0 0 chr12 24357353 24357421 -119429034 - L2 LINE L2 -19 3294 3227 288 365 141 6 chr12 24357676 24357846 -119428609 + L2 LINE L2 3075 3267 -5 554 269 134 6 chr12 24359617 24359788 -119426667 - MIR SINE MIR -62 200 8 26 0 0 0 chr12 24359835 24359861 -119426594 + AT_rich Low_complexity Low_complexity 1 26 0 423 302 81 0 chr12 24360360 24360509 -119425946 - L2 LINE L2 -4 3309 3149 975 277 50 70 chr12 24360523 24360992 -119425463 + L1MEd LINE L1 564 1014 -5191 2082 142 0 0 chr12 24360992 24361302 -119425153 + AluJo SINE Alu 1 310 -2 975 277 50 70 chr12 24361302 24361589 -119424866 + L1MEd LINE L1 1014 1305 -4900 505 244 113 50 chr12 24362243 24362603 -119423852 + L1MEd LINE L1 2117 2460 -3755 24 67 0 0 chr12 24362735 24362780 -119423675 + AT_rich Low_complexity Low_complexity 1 45 0 716 309 29 3 chr12 24362812 24363158 -119423297 + L1MEd LINE L1 2479 2833 -3382 21 0 0 0 chr12 24364384 24364405 -119422050 + AT_rich Low_complexity Low_complexity 1 21 0 260 228 13 25 chr12 24366254 24366333 -119420122 + CT-rich Low_complexity Low_complexity 2 79 0 267 330 52 17 chr12 24369856 24369971 -119416484 + L2 LINE L2 3190 3308 -5 364 277 138 25 chr12 24369974 24370133 -119416322 - L3b LINE CR1 -96 1487 1311 183 297 109 0 chr12 24371159 24371223 -119415232 + L2 LINE L2 2990 3060 -212 214 372 83 42 chr12 24371781 24372117 -119414338 + L2 LINE L2 2828 3177 -95 578 288 81 77 chr12 24372432 24373225 -119413230 - L1MEd LINE L1 -2476 3653 2845 2065 118 0 13 chr12 24373225 24373529 -119412926 + AluSx SINE Alu 1 300 -12 578 288 81 77 chr12 24373529 24374196 -119412259 - L1MEd LINE L1 -3284 2845 2183 1877 151 0 3 chr12 24374213 24374498 -119411957 - AluSx SINE Alu -28 284 1 638 274 65 21 chr12 24375226 24375601 -119410854 - L1MEd LINE L1 -4903 1216 960 592 261 134 25 chr12 24375636 24375912 -119410543 - L1ME1 LINE L1 -12 6221 5913 1891 163 3 3 chr12 24375913 24376208 -119410247 + AluJb SINE Alu 3 297 -15 741 211 127 9 chr12 24376208 24376421 -119410034 - L1ME1 LINE L1 -1291 4924 4687 * 4377 243 80 48 chr12 24376420 24376734 -119409721 - L1ME1 LINE L1 -2022 4193 3891 2629 52 0 0 chr12 24376734 24377043 -119409412 + AluY SINE Alu 1 309 -2 4377 243 80 48 chr12 24377043 24378631 -119407824 - L1ME1 LINE L1 -2324 3891 2258 1662 190 0 0 chr12 24378631 24378921 -119407534 - AluSx SINE Alu -18 294 5 4377 243 80 48 chr12 24378921 24379228 -119407227 - L1ME1 LINE L1 -3957 2258 1962 315 264 187 33 chr12 24379240 24379422 -119407033 - L1ME1 LINE L1 -4919 1477 1268 1871 261 155 45 chr12 24379426 24380488 -119405967 - L1ME1 LINE L1 -5180 1216 38 562 272 41 72 chr12 24380974 24381238 -119405217 + MLT1I LTR MaLR 63 304 -105 21 0 0 0 chr12 24381916 24381937 -119404518 + AT_rich Low_complexity Low_complexity 1 21 0 255 174 0 29 chr12 24381970 24382039 -119404416 - L1MC4 LINE L1 -1336 6706 6640 23 0 0 0 chr12 24382241 24382264 -119404191 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 24382426 24382447 -119404008 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr12 24383826 24383847 -119402608 + (TG)n Simple_repeat Simple_repeat 1 21 0 237 33 0 0 chr12 24384802 24384832 -119401623 + (CA)n Simple_repeat Simple_repeat 2 31 0 242 185 0 0 chr12 24385744 24385798 -119400657 - LTR66 LTR ERVL -163 447 394 219 69 0 0 chr12 24386555 24386584 -119399871 + (CA)n Simple_repeat Simple_repeat 2 30 0 227 390 92 29 chr12 24389375 24389895 -119396560 - L2 LINE L2 -340 2974 2422 1672 173 0 19 chr12 24390164 24390477 -119395978 - AluJo SINE Alu -3 309 3 222 139 23 0 chr12 24391177 24391220 -119395235 + (CA)n Simple_repeat Simple_repeat 2 45 0 6050 39 0 0 chr12 24391320 24392047 -119394408 - L1PA5 LINE L1 -5 6149 5423 387 318 142 14 chr12 24392957 24393168 -119393287 - MIR SINE MIR -5 257 20 289 311 53 30 chr12 24393625 24393757 -119392698 - MIR SINE MIR -105 157 23 1627 209 36 47 chr12 24394013 24394483 -119391972 + MLT1C LTR MaLR 1 465 -2 222 91 0 0 chr12 24394722 24394755 -119391700 + (TG)n Simple_repeat Simple_repeat 2 34 0 313 141 28 0 chr12 24394771 24394842 -119391613 + (TA)n Simple_repeat Simple_repeat 2 74 0 2001 143 7 0 chr12 24394885 24395185 -119391270 + AluSx SINE Alu 1 302 -10 1916 147 7 0 chr12 24395415 24395721 -119390734 + AluSx SINE Alu 1 308 -4 1858 67 25 0 chr12 24396129 24396395 -119390060 + AluY SINE Alu 38 309 0 216 0 0 0 chr12 24396884 24396908 -119389547 + (A)n Simple_repeat Simple_repeat 1 24 0 266 272 84 73 chr12 24397739 24397930 -119388525 - MIR SINE MIR -30 232 40 22 0 0 0 chr12 24399297 24399319 -119387136 + AT_rich Low_complexity Low_complexity 1 22 0 1583 142 6 107 chr12 24400536 24400882 -119385573 + AluJo SINE Alu 2 312 0 289 318 132 16 chr12 24402000 24402129 -119384326 + MIR3 SINE MIR 34 177 -31 2286 78 3 0 chr12 24402145 24402456 -119383999 - AluSp SINE Alu 0 312 1 24 53 0 0 chr12 24503593 24503631 -119282824 + AT_rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr12 24504688 24504709 -119281746 + (T)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr12 24504793 24504818 -119281637 + AT_rich Low_complexity Low_complexity 1 25 0 306 0 0 0 chr12 24505761 24505795 -119280660 + (TA)n Simple_repeat Simple_repeat 2 35 0 1426 167 115 15 chr12 24506045 24506216 -119280239 - AluJo SINE Alu 0 312 160 261 0 0 0 chr12 24506216 24506245 -119280210 + (GCTG)n Simple_repeat Simple_repeat 3 31 0 644 82 0 10 chr12 24506245 24506342 -119280113 + (CAGA)n Simple_repeat Simple_repeat 1 96 0 1426 167 115 15 chr12 24506342 24506438 -119280017 - AluJo SINE Alu -151 161 17 3649 246 47 29 chr12 24507524 24508671 -119277784 - L1MEc LINE L1 -2685 3530 2388 1497 192 7 36 chr12 24508671 24508973 -119277482 + AluJb SINE Alu 1 293 -19 3649 246 47 29 chr12 24508973 24509344 -119277111 - L1MEc LINE L1 -3827 2388 2025 883 180 21 31 chr12 24509349 24509543 -119276912 - AluJb SINE Alu 0 312 121 255 270 110 0 chr12 24510683 24510783 -119275672 - HAL1b LINE L1 -419 929 819 24 0 0 0 chr12 24510799 24510823 -119275632 + AT_rich Low_complexity Low_complexity 1 24 0 2083 135 0 0 chr12 24510910 24511214 -119275241 - AluSx SINE Alu -8 304 1 541 290 0 12 chr12 24511391 24511560 -119274895 - FRAM SINE Alu 0 176 10 198 103 0 0 chr12 24511564 24511593 -119274862 + (GCTG)n Simple_repeat Simple_repeat 3 31 0 207 0 0 0 chr12 24512246 24512269 -119274186 + (A)n Simple_repeat Simple_repeat 1 23 0 186 156 0 0 chr12 24512487 24512532 -119273923 + T-rich Low_complexity Low_complexity 1 45 0 1988 133 0 40 chr12 24512595 24512919 -119273536 + AluJo SINE Alu 1 311 -1 189 0 0 0 chr12 24514315 24514336 -119272119 + (T)n Simple_repeat Simple_repeat 1 21 0 6804 231 69 38 chr12 24515189 24516972 -119269483 + L1ME2 LINE L1 2936 4662 -1500 2130 107 45 0 chr12 24516972 24517262 -119269193 + AluSg SINE Alu 1 303 -7 6804 231 69 38 chr12 24517262 24517325 -119269130 + L1ME2 LINE L1 4662 4722 -1440 1229 186 0 128 chr12 24517325 24517669 -119268786 + AluJo SINE Alu 1 300 -2 6804 231 69 38 chr12 24517669 24518910 -119267545 + L1ME2 LINE L1 4722 6155 -7 261 346 30 38 chr12 24518950 24519083 -119267372 + L2 LINE L2 3136 3267 -5 493 380 69 20 chr12 24519100 24519637 -119266818 - L2 LINE L2 -917 2397 1835 192 40 0 0 chr12 24520325 24520350 -119266105 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 225 65 0 0 chr12 24520614 24520645 -119265810 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 182 37 37 0 chr12 24521408 24521435 -119265020 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 24 0 0 0 chr12 24521596 24521620 -119264835 + AT_rich Low_complexity Low_complexity 1 24 0 969 166 132 31 chr12 24522292 24522581 -119263874 - MER33 DNA MER1_type -6 318 1 305 225 0 38 chr12 24523149 24523229 -119263226 + MIR3 SINE MIR 125 201 -7 204 180 16 49 chr12 24523510 24523571 -119262884 + A-rich Low_complexity Low_complexity 1 59 0 378 304 44 150 chr12 24523756 24524256 -119262199 - L2 LINE L2 -1 3271 2825 839 94 86 0 chr12 24524553 24524681 -119261774 + MER85 DNA T2_type 1 139 0 754 207 36 47 chr12 24524877 24525070 -119261385 - AluJo SINE Alu -2 310 120 1601 220 72 37 chr12 24525344 24525830 -119260625 - MLT1D LTR MaLR 0 505 3 886 335 121 19 chr12 24526714 24527156 -119259299 - L2 LINE L2 -8 3305 2909 1663 188 0 0 chr12 24527156 24527449 -119259006 + AluJo SINE Alu 1 293 -19 886 335 121 19 chr12 24527449 24527909 -119258546 - L2 LINE L2 -404 2909 2310 1393 174 3 68 chr12 24528737 24529030 -119257425 + AluSx SINE Alu 1 274 -38 216 0 0 0 chr12 24529035 24529059 -119257396 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 1568 210 41 25 chr12 24529171 24529538 -119256917 + MLT1A2 LTR MaLR 2 374 0 284 286 26 0 chr12 24529690 24529767 -119256688 + GA-rich Low_complexity Low_complexity 4 82 0 321 330 96 42 chr12 24529810 24530122 -119256333 + L2 LINE L2 2598 2926 -388 243 248 58 107 chr12 24530357 24530478 -119255977 + L2 LINE L2 3155 3269 -3 1318 155 4 39 chr12 24530717 24530949 -119255506 + AluJo SINE Alu 1 224 -88 454 250 28 9 chr12 24530992 24531100 -119255355 - MER46C DNA MER2_type -79 259 150 1764 154 3 46 chr12 24533386 24533509 -119252946 + AluJb SINE Alu 1 128 -184 678 47 0 0 chr12 24533509 24533595 -119252860 + (TATG)n Simple_repeat Simple_repeat 2 87 0 1764 154 3 46 chr12 24533595 24533795 -119252660 + AluJb SINE Alu 128 310 -2 214 274 0 0 chr12 24534065 24534127 -119252328 + (TA)n Simple_repeat Simple_repeat 2 63 0 1550 189 11 14 chr12 24535061 24535342 -119251113 + AluJo SINE Alu 5 284 -28 3484 183 61 25 chr12 24535877 24536631 -119249824 + L1MB5 LINE L1 5385 6165 -9 568 295 62 13 chr12 24536650 24536874 -119249581 + L1MEc LINE L1 -563 4294966967 -6613 233 330 11 11 chr12 24536955 24537046 -119249409 + L1MEc LINE L1 178 268 -6016 * 357 321 92 48 chr12 24537042 24537413 -119249042 + L1MEc LINE L1 223 609 -5671 1994 240 56 56 chr12 24537494 24538167 -119248288 + L1MEc LINE L1 619 1292 -5092 2156 109 3 10 chr12 24538167 24538470 -119247985 + AluSg1 SINE Alu 1 301 -8 1994 240 56 56 chr12 24538470 24538784 -119247671 + L1MEc LINE L1 1291 1604 -4780 333 0 0 0 chr12 24538785 24538822 -119247633 + (TG)n Simple_repeat Simple_repeat 2 38 0 1940 172 25 20 chr12 24538847 24539255 -119247200 + L1MA9 LINE L1 5896 6305 -7 747 275 78 58 chr12 24539361 24539706 -119246749 + L1MEc LINE L1 1577 2079 -4484 225 188 62 12 chr12 24539715 24539795 -119246660 + (TA)n Simple_repeat Simple_repeat 1 84 0 902 254 75 69 chr12 24539833 24540510 -119245945 + L1MEc LINE L1 1898 2578 -3985 842 190 58 116 chr12 24540536 24540751 -119245704 + L1MEc LINE L1 2813 2998 -3384 1533 200 4 7 chr12 24540751 24541026 -119245429 - AluJb SINE Alu -28 284 11 842 190 58 116 chr12 24541026 24541189 -119245266 + L1MEc LINE L1 2998 3169 -3213 575 205 116 0 chr12 24541193 24541305 -119245150 + FLAM_C SINE Alu 1 125 -18 828 217 0 33 chr12 24541464 24541644 -119244811 + FRAM SINE Alu 3 176 0 6759 218 50 55 chr12 24541656 24544909 -119241546 + L1MB8 LINE L1 3013 6241 -6 294 340 42 56 chr12 24545098 24545242 -119241213 + L2 LINE L2 2916 3057 -256 227 206 48 48 chr12 24545328 24545391 -119241064 + L2 LINE L2 3251 3313 0 2187 91 3 0 chr12 24546500 24546786 -119239669 + AluSx SINE Alu 5 291 -21 807 161 0 0 chr12 24546792 24546972 -119239483 + (TA)n Simple_repeat Simple_repeat 1 180 0 699 195 0 0 chr12 24546986 24547264 -119239191 + (TA)n Simple_repeat Simple_repeat 1 278 0 324 70 0 0 chr12 24547257 24547300 -119239155 + (CA)n Simple_repeat Simple_repeat 2 44 0 * 1193 232 64 90 chr12 24548242 24548789 -119237666 + MLT1F LTR MaLR 2 534 -8 194 372 66 15 chr12 24548803 24548940 -119237515 + MIR3 SINE MIR 14 157 -51 372 258 46 66 chr12 24549684 24549835 -119236620 + L2 LINE L2 3166 3313 0 1892 155 0 13 chr12 24550129 24550432 -119236023 + AluSx SINE Alu 1 299 -13 206 225 0 0 chr12 24550734 24550774 -119235681 + (CA)n Simple_repeat Simple_repeat 1 40 0 408 111 0 0 chr12 24554537 24554600 -119231855 + (TC)n Simple_repeat Simple_repeat 2 64 0 2043 115 10 14 chr12 24556799 24557138 -119229317 + AluSx SINE Alu 7 312 0 1985 150 0 6 chr12 24557990 24558303 -119228152 + AluSx SINE Alu 1 311 -1 1334 193 36 18 chr12 24558465 24558745 -119227710 - AluJb SINE Alu -23 289 5 232 322 0 0 chr12 24558904 24558963 -119227492 - L3 LINE CR1 -1 1576 1518 624 245 0 34 chr12 24561465 24561612 -119224843 - L2 LINE L2 -2 3311 3170 321 269 0 0 chr12 24563308 24563375 -119223080 - L2 LINE L2 -52 3261 3195 844 164 0 27 chr12 24565945 24566091 -119220364 + FLAM_C SINE Alu 1 142 -1 271 263 247 10 chr12 24566656 24566850 -119219605 + L2 LINE L2 2093 2332 -982 347 262 47 19 chr12 24567718 24567825 -119218630 + L2 LINE L2 3163 3272 0 21 36 0 0 chr12 24568742 24568770 -119217685 + AT_rich Low_complexity Low_complexity 1 28 0 1387 248 0 0 chr12 24568770 24569052 -119217403 - AluJo SINE Alu -30 282 1 852 294 24 0 chr12 24569388 24569636 -119216819 - MIR SINE MIR -5 257 4 4226 152 26 17 chr12 24569701 24571049 -119215406 + L1MA8 LINE L1 4668 6028 -263 216 294 76 43 chr12 24579328 24579420 -119207035 - L2 LINE L2 0 3272 3178 28 71 0 0 chr12 24579499 24579555 -119206900 + AT_rich Low_complexity Low_complexity 1 56 0 265 316 25 0 chr12 24579752 24579831 -119206624 + MIR SINE MIR 63 143 -119 2332 73 0 3 chr12 24580093 24580396 -119206059 + AluY SINE Alu 1 302 -9 257 339 9 18 chr12 24583443 24583552 -119202903 + MIR SINE MIR 155 262 0 232 246 0 53 chr12 24584286 24584343 -119202112 + L2 LINE L2 3219 3272 0 836 309 20 4 chr12 24584616 24584862 -119201593 + MIR SINE MIR 3 252 -10 1270 153 9 9 chr12 24584886 24585101 -119201354 - AluJb SINE Alu -97 215 1 2161 89 0 41 chr12 24586175 24586489 -119199966 - AluSq SINE Alu -12 301 1 489 362 24 14 chr12 24587587 24587794 -119198661 - MIR SINE MIR -6 256 48 2720 183 0 56 chr12 24587934 24588562 -119197893 + L1MB8 LINE L1 5586 6178 0 288 0 0 0 chr12 24589142 24589174 -119197281 + (T)n Simple_repeat Simple_repeat 1 32 0 201 175 0 0 chr12 24589586 24589626 -119196829 + A-rich Low_complexity Low_complexity 1 40 0 262 288 160 0 chr12 24590203 24590328 -119196127 + MIR SINE MIR 106 250 -12 229 259 18 54 chr12 24590934 24591046 -119195409 + L1 LINE L1 3730 3837 -2309 529 317 75 46 chr12 24591250 24591688 -119194767 + L2 LINE L2 1707 2157 -1157 23 33 0 0 chr12 24591907 24591937 -119194518 + AT_rich Low_complexity Low_complexity 1 30 0 319 70 0 0 chr12 24592689 24592732 -119193723 - AluSq SINE Alu -8 293 251 1451 91 0 10 chr12 24592732 24592931 -119193524 - AluSq SINE Alu -116 197 1 608 347 36 5 chr12 24593293 24593515 -119192940 - MIR SINE MIR -14 248 20 2776 6 0 10 chr12 24596195 24596509 -119189946 + AluYa5 SINE Alu 1 311 0 22 35 0 0 chr12 24596953 24596982 -119189473 + AT_rich Low_complexity Low_complexity 1 29 0 180 77 0 0 chr12 24598291 24598317 -119188138 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 893 272 20 16 chr12 24599636 24599882 -119186573 - MIR SINE MIR -1 261 15 881 281 117 32 chr12 24600124 24600526 -119185929 + MLT1K LTR MaLR 142 577 -11 321 299 52 0 chr12 24602747 24602844 -119183611 + L2 LINE L2 3170 3271 -1 315 184 153 52 chr12 24603248 24603372 -119183083 + MIR SINE MIR 3 139 -69 182 323 86 54 chr12 24603716 24603809 -119182646 + MER5A DNA MER1_type 3 98 -91 26 30 0 0 chr12 24604059 24604092 -119182363 + AT_rich Low_complexity Low_complexity 1 33 0 352 243 62 42 chr12 24604127 24604271 -119182184 + L2 LINE L2 3165 3311 -2 2380 97 0 0 chr12 24604868 24605177 -119181278 + AluSc SINE Alu 1 309 0 187 250 83 0 chr12 24605907 24605955 -119180500 + MIR SINE MIR 202 253 -9 2276 76 3 3 chr12 24607364 24607668 -119178787 + AluSx SINE Alu 1 304 -8 315 314 126 0 chr12 24608499 24608658 -119177797 - MIR SINE MIR -2 260 82 2366 74 10 3 chr12 24608677 24608986 -119177469 - AluY SINE Alu 0 311 1 595 330 44 6 chr12 24609153 24609335 -119177120 - MIR3 SINE MIR -5 203 15 279 335 67 18 chr12 24609761 24609925 -119176530 - MIR3 SINE MIR -35 173 2 244 169 0 68 chr12 24611253 24611312 -119175143 + Alu SINE Alu 236 290 -10 198 0 0 0 chr12 24611885 24611907 -119174548 + (A)n Simple_repeat Simple_repeat 1 22 0 1720 167 0 43 chr12 24612234 24612558 -119173897 + AluJo SINE Alu 1 310 -2 277 331 50 44 chr12 24613547 24613728 -119172727 - L2 LINE L2 -508 2806 2625 21 0 0 0 chr12 24614263 24614284 -119172171 + AT_rich Low_complexity Low_complexity 1 21 0 273 260 13 26 chr12 24614302 24614379 -119172076 - MIR SINE MIR -56 152 77 23 33 0 0 chr12 24614572 24614602 -119171853 + AT_rich Low_complexity Low_complexity 1 30 0 320 343 114 0 chr12 24618573 24618713 -119167742 - L2 LINE L2 -3 3269 3114 267 340 47 52 chr12 24620209 24620400 -119166055 - MER91A DNA MER1_type -4 192 3 359 314 149 21 chr12 24620401 24620589 -119165866 - MIR SINE MIR -34 228 17 21 71 0 0 chr12 24620630 24620672 -119165783 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr12 24622137 24622165 -119164290 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr12 24624641 24624678 -119161777 + AT_rich Low_complexity Low_complexity 1 37 0 1349 110 0 0 chr12 24626532 24626705 -119159750 - AluSg/x SINE Alu -11 299 127 354 326 70 0 chr12 24627065 24627194 -119159261 - L3 LINE CR1 -105 1472 1335 255 232 132 114 chr12 24627884 24628104 -119158351 + MLT1H LTR MaLR 97 320 -229 246 241 23 35 chr12 24628157 24628244 -119158211 + MLT1H LTR MaLR 464 549 0 2489 64 0 6 chr12 24628342 24628655 -119157800 + AluY SINE Alu 1 311 0 650 271 76 36 chr12 24628835 24629042 -119157413 - L1ME LINE L1 -509 5655 5421 2346 101 0 0 chr12 24629042 24629348 -119157107 - AluSq SINE Alu -6 307 2 650 271 76 36 chr12 24629348 24629514 -119156941 - L1ME LINE L1 -743 5421 5263 615 305 57 22 chr12 24629646 24630053 -119156402 - L1ME LINE L1 -1050 5096 4676 252 238 60 0 chr12 24630158 24630193 -119156262 - HERVS71 LTR ERV1 -8436 542 511 351 0 0 0 chr12 24630193 24630232 -119156223 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 238 60 0 chr12 24630232 24630280 -119156175 - HERVS71 LTR ERV1 -8467 511 454 387 0 0 0 chr12 24630523 24630566 -119155889 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 2339 124 13 24 chr12 24630725 24631104 -119155351 + THE1C LTR MaLR 1 375 0 1104 94 0 0 chr12 24631227 24631376 -119155079 - L1PA7 LINE L1 -7 6147 5999 2223 202 20 22 chr12 24631386 24631890 -119154565 - L1MB4 LINE L1 -1 6179 5677 1978 214 36 22 chr12 24631906 24632718 -119153737 - L1M4 LINE L1 -453 5731 4909 928 299 100 27 chr12 24634367 24634768 -119151687 - LTR16A LTR ERVL 0 450 21 412 274 52 30 chr12 24634949 24635084 -119151371 + MIR3 SINE MIR 61 198 -10 2036 299 120 34 chr12 24635168 24636709 -119149746 + L2 LINE L2 1580 3313 0 1537 183 0 8 chr12 24638457 24638720 -119147735 - AluJo SINE Alu -13 299 39 21 0 0 0 chr12 24639160 24639181 -119147274 + AT_rich Low_complexity Low_complexity 1 21 0 2101 125 0 0 chr12 24640361 24640642 -119145813 + AluSx SINE Alu 1 281 -31 207 0 0 0 chr12 24640643 24640666 -119145789 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 686 242 29 46 chr12 24641075 24641381 -119145074 + L1M4 LINE L1 5041 5341 -805 1982 120 3 3 chr12 24641611 24641944 -119144511 + AluSx SINE Alu 1 333 0 192 316 82 10 chr12 24642012 24642110 -119144345 + L3b LINE CR1 1286 1390 -193 189 0 0 0 chr12 24642639 24642660 -119143795 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 280 222 48 0 chr12 24645080 24645143 -119141312 - MSTD LTR MaLR -330 66 1 2155 105 0 49 chr12 24645706 24646031 -119140424 + AluY SINE Alu 1 309 -2 1015 178 47 19 chr12 24646086 24646299 -119140156 - MER20 DNA MER1_type 0 219 1 192 368 63 17 chr12 24646840 24647014 -119139441 - L3 LINE CR1 -297 1280 1099 895 280 0 9 chr12 24647327 24647552 -119138903 + MER58A DNA MER1_type 1 223 -1 1879 137 7 36 chr12 24647625 24647932 -119138523 - AluJb SINE Alu -4 308 11 1331 212 85 40 chr12 24648083 24648611 -119137844 - MER20B DNA MER1_type 0 783 232 21 57 0 0 chr12 24648704 24648739 -119137716 + AT_rich Low_complexity Low_complexity 1 35 0 324 255 85 26 chr12 24649249 24649402 -119137053 + HAL1 LINE L1 837 998 -1509 1606 200 10 0 chr12 24649405 24649705 -119136750 + AluJb SINE Alu 10 312 0 1327 199 33 25 chr12 24649761 24650037 -119136418 + AluJo SINE Alu 5 282 -30 357 306 28 14 chr12 24650418 24650562 -119135893 + HAL1 LINE L1 1567 1712 -795 323 263 0 129 chr12 24650893 24651064 -119135391 + HAL1b LINE L1 721 869 -479 1031 201 122 72 chr12 24651304 24651787 -119134668 - Charlie4a DNA MER1_type -1 507 1 5832 146 11 25 chr12 24652082 24652875 -119133580 + L1MA7 LINE L1 5157 5932 -359 1861 131 4 0 chr12 24652875 24653150 -119133305 + AluSx SINE Alu 37 312 0 5832 146 11 25 chr12 24653150 24653504 -119132951 + L1MA7 LINE L1 5932 6290 -1 22 0 0 0 chr12 24654704 24654726 -119131729 + AT_rich Low_complexity Low_complexity 1 22 0 2352 229 52 21 chr12 24654780 24655434 -119131021 - L1ME3A LINE L1 -1 6169 5496 5189 130 16 38 chr12 24656356 24656708 -119129747 + HSMAR2 DNA Mariner 8 366 -936 2121 128 3 0 chr12 24656708 24657012 -119129443 + AluSg SINE Alu 1 305 -5 5189 130 16 38 chr12 24657012 24657550 -119128905 + HSMAR2 DNA Mariner 366 878 -424 28 29 0 0 chr12 24657771 24657806 -119128649 + AT_rich Low_complexity Low_complexity 1 35 0 225 94 0 0 chr12 24659664 24659696 -119126759 + (A)n Simple_repeat Simple_repeat 1 32 0 504 313 86 73 chr12 24660918 24661723 -119124732 + L2 LINE L2 1811 2625 -689 1826 155 0 11 chr12 24662208 24662532 -119123923 + AluJb SINE Alu 2 322 0 857 292 55 41 chr12 24663487 24664145 -119122310 - L2 LINE L2 -94 3219 2497 204 267 13 27 chr12 24665100 24665175 -119121280 + (TATG)n Simple_repeat Simple_repeat 2 75 0 219 360 63 18 chr12 24666511 24666622 -119119833 + L2 LINE L2 3148 3263 -9 214 274 85 28 chr12 24667262 24667368 -119119087 - L2 LINE L2 -7 3265 3154 198 143 0 0 chr12 24669664 24669699 -119116756 + (CA)n Simple_repeat Simple_repeat 2 36 0 328 214 23 92 chr12 24670108 24670239 -119116216 + LTR65 LTR ERV1 4 125 -544 310 237 82 10 chr12 24670509 24670606 -119115849 + LTR65 LTR ERV1 560 663 -6 464 288 34 7 chr12 24671566 24671712 -119114743 + MIR SINE MIR 48 197 -65 2151 110 3 3 chr12 24672486 24672796 -119113659 + AluSg SINE Alu 1 310 0 180 0 0 0 chr12 24675138 24675158 -119111297 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3223 253 41 84 chr12 24677686 24679659 -119106796 + L1MEc LINE L1 49 1932 -4464 1600 165 0 72 chr12 24679659 24679980 -119106475 + AluJo SINE Alu 1 298 -14 3223 253 41 84 chr12 24679980 24680051 -119106404 + L1MEc LINE L1 1932 2005 -4391 496 234 28 35 chr12 24680057 24680198 -119106257 + AluJb SINE Alu 113 252 -60 24 53 0 0 chr12 24730272 24730310 -119056145 + AT_rich Low_complexity Low_complexity 1 38 0 3990 243 19 12 chr12 24730363 24731479 -119054976 + L1MB7 LINE L1 3777 4899 -1247 1571 257 58 93 chr12 24731509 24731667 -119054788 + MER21B LTR ERV1 21 183 -680 2347 63 0 3 chr12 24731667 24731968 -119054487 + AluY SINE Alu 1 300 -11 1571 257 58 93 chr12 24731968 24732109 -119054346 + MER21B LTR ERV1 183 327 -536 1872 135 0 17 chr12 24732109 24732398 -119054057 + AluSx SINE Alu 4 287 -25 1571 257 58 93 chr12 24732398 24732841 -119053614 + MER21B LTR ERV1 327 738 -125 3791 201 36 19 chr12 24732870 24734132 -119052323 + L1MB7 LINE L1 4901 6184 0 1385 176 14 11 chr12 24734641 24734925 -119051530 + L1MA3 LINE L1 6020 6304 -1 276 283 156 15 chr12 24735330 24735471 -119050984 + MIR SINE MIR 3 157 -51 391 306 181 10 chr12 24736373 24736572 -119049883 - MIR SINE MIR -10 252 20 376 308 0 0 chr12 24736817 24736908 -119049547 + L2 LINE L2 3223 3313 0 782 298 180 6 chr12 24737038 24737571 -119048884 - L2 LINE L2 0 3313 2692 313 299 21 0 chr12 24737641 24737738 -119048717 - MER20B DNA MER1_type -640 143 45 707 284 167 13 chr12 24737740 24738039 -119048416 - L2 LINE L2 -631 2683 2339 2054 127 0 0 chr12 24738856 24739162 -119047293 - AluSx SINE Alu 0 306 1 315 49 0 0 chr12 24739240 24739281 -119047174 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 258 81 0 0 chr12 24741040 24741077 -119045378 + (TG)n Simple_repeat Simple_repeat 2 38 0 246 285 124 58 chr12 24744126 24744263 -119042192 + MIR SINE MIR 67 212 -50 425 329 50 43 chr12 24745151 24745431 -119041024 + MER102b DNA MER1_type 48 329 -12 1854 170 6 10 chr12 24746955 24747303 -119039152 + AluJo SINE Alu 1 347 0 207 100 0 0 chr12 24747809 24747839 -119038616 + (T)n Simple_repeat Simple_repeat 1 30 0 231 88 0 0 chr12 24748023 24748057 -119038398 + (TG)n Simple_repeat Simple_repeat 1 34 0 678 210 65 52 chr12 24749696 24749944 -119036511 - L1MC4a LINE L1 -1737 6071 5821 207 0 0 0 chr12 24749949 24749972 -119036483 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1982 92 4 22 chr12 24750201 24750473 -119035982 - AluSx SINE Alu -45 267 1 924 163 22 70 chr12 24750573 24750800 -119035655 + MER20 DNA MER1_type 4 219 0 22 0 0 0 chr12 24751062 24751084 -119035371 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 24751572 24751594 -119034861 + AT_rich Low_complexity Low_complexity 1 22 0 2045 95 0 32 chr12 24751698 24751982 -119034473 + AluY SINE Alu 1 275 -36 1431 202 0 18 chr12 24754439 24754711 -119031744 - AluJb SINE Alu -45 267 1 22 0 0 0 chr12 24758005 24758027 -119028428 + AT_rich Low_complexity Low_complexity 1 22 0 718 268 62 68 chr12 24758657 24759026 -119027429 + L1ME LINE L1 5398 5764 -357 26 30 0 0 chr12 24759157 24759190 -119027265 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr12 24759778 24759810 -119026645 + AT_rich Low_complexity Low_complexity 1 32 0 186 43 0 0 chr12 24760102 24760125 -119026330 + (A)n Simple_repeat Simple_repeat 1 23 0 319 307 0 0 chr12 24760668 24760756 -119025699 + MIR SINE MIR 175 262 0 1887 115 31 0 chr12 24760778 24761039 -119025416 - AluSq SINE Alu -44 269 1 444 257 62 110 chr12 24761085 24761290 -119025165 + L2 LINE L2 3036 3224 -89 360 0 0 0 chr12 24761290 24761330 -119025125 + (TG)n Simple_repeat Simple_repeat 1 40 0 444 257 62 110 chr12 24761330 24761416 -119025039 + L2 LINE L2 3224 3313 0 372 299 41 117 chr12 24763154 24763616 -119022839 - L2 LINE L2 0 3272 2846 2222 110 0 10 chr12 24763699 24764007 -119022448 - AluSx SINE Alu -7 305 1 1791 139 82 4 chr12 24764457 24764738 -119021717 - AluSx SINE Alu -9 303 1 2390 101 0 0 chr12 24767618 24767924 -119018531 - AluSq SINE Alu -7 306 1 23 0 0 0 chr12 24767926 24767949 -119018506 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 24767998 24768019 -119018436 + AT_rich Low_complexity Low_complexity 1 21 0 217 211 14 56 chr12 24769137 24769208 -119017247 + A-rich Low_complexity Low_complexity 5 72 0 624 228 48 24 chr12 24769949 24770116 -119016339 + MIR SINE MIR 90 260 -2 1794 169 33 28 chr12 24770381 24770743 -119015712 - MER47A DNA MER2_type 0 366 3 180 0 0 0 chr12 24770771 24770791 -119015664 + (TA)n Simple_repeat Simple_repeat 2 21 0 389 234 138 7 chr12 24771154 24771299 -119015156 - MER106B DNA MER1_type 0 1059 896 214 250 18 0 chr12 24772670 24772726 -119013729 + GA-rich Low_complexity Low_complexity 3 59 0 2193 123 0 3 chr12 24773510 24773820 -119012635 - AluSg SINE Alu -1 309 1 2140 92 7 3 chr12 24773946 24774230 -119012225 + AluSc SINE Alu 1 285 -24 243 0 0 0 chr12 24774337 24774364 -119012091 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 553 259 168 18 chr12 24774811 24775031 -119011424 - MIR SINE MIR -3 259 7 243 161 0 0 chr12 24775255 24775311 -119011144 + GA-rich Low_complexity Low_complexity 2 57 0 512 344 40 32 chr12 24775660 24775913 -119010542 + L3 LINE CR1 1319 1573 -4 475 208 0 20 chr12 24776427 24776528 -119009927 + MIR SINE MIR 164 262 0 435 328 65 11 chr12 24776621 24776807 -119009648 + L3 LINE CR1 1380 1575 -2 552 284 62 58 chr12 24776921 24777164 -119009291 + MIR SINE MIR 18 261 -1 2006 130 3 13 chr12 24778994 24779294 -119007161 + AluSx SINE Alu 1 297 -15 2463 70 0 3 chr12 24779300 24779612 -119006843 + AluY SINE Alu 1 311 0 183 282 17 144 chr12 24780973 24781154 -119005301 + L3 LINE CR1 1339 1496 -81 1580 212 17 7 chr12 24781319 24781616 -119004839 + AluJb SINE Alu 1 300 -12 307 325 135 55 chr12 24781667 24781967 -119004488 - L1ME4a LINE L1 -3 6118 5844 1233 174 150 12 chr12 24781967 24782089 -119004366 - AluJb SINE Alu -14 288 184 459 0 0 0 chr12 24782089 24782140 -119004315 + (TG)n Simple_repeat Simple_repeat 2 52 0 1233 174 150 12 chr12 24782140 24782270 -119004185 - AluJb SINE Alu -118 184 1 307 325 135 55 chr12 24782270 24782679 -119003776 - L1ME4a LINE L1 -277 5844 5352 270 171 86 0 chr12 24782749 24782819 -119003636 + MER116 DNA Mariner 5 80 0 816 161 0 0 chr12 24783166 24783309 -119003146 + FRAM SINE Alu 33 175 -1 264 212 30 0 chr12 24784654 24784720 -119001735 + U3 snRNA snRNA 1 68 -149 1247 186 59 46 chr12 24785734 24786040 -119000415 - AluJo SINE Alu -2 310 1 2257 103 3 0 chr12 24786122 24786413 -119000042 - AluSg1 SINE Alu -17 292 1 723 309 44 25 chr12 24786937 24787345 -118999110 - L1ME LINE L1 -366 5796 5381 2652 288 126 41 chr12 24787575 24788023 -118998432 - L1ME LINE L1 -1025 5121 4713 255 31 0 0 chr12 24788023 24788055 -118998400 + (CA)n Simple_repeat Simple_repeat 1 32 0 2652 288 126 41 chr12 24788055 24789006 -118997449 - L1ME LINE L1 -1433 4713 3844 1842 114 0 82 chr12 24789006 24789322 -118997133 + AluSx SINE Alu 1 290 -22 2652 288 126 41 chr12 24789322 24790541 -118995914 - L1ME LINE L1 -2302 3844 2279 319 344 24 0 chr12 24790552 24790677 -118995778 - MIR SINE MIR -126 136 9 25 31 0 0 chr12 24791238 24791270 -118995185 + AT_rich Low_complexity Low_complexity 1 32 0 363 309 15 100 chr12 24791284 24791543 -118994912 - L1ME4a LINE L1 -73 6048 5812 274 307 20 10 chr12 24791589 24791690 -118994765 - L1ME4a LINE L1 -309 5812 5711 270 209 70 23 chr12 24791701 24791787 -118994668 + MLT1J LTR MaLR 420 509 -2 273 310 20 0 chr12 24791821 24791921 -118994534 - L1ME4a LINE L1 -518 5603 5502 26 30 0 0 chr12 24793156 24793189 -118993266 + AT_rich Low_complexity Low_complexity 1 33 0 499 181 12 0 chr12 24793504 24793664 -118992791 + (TA)n Simple_repeat Simple_repeat 1 162 0 1541 230 7 0 chr12 24794488 24794788 -118991667 + AluJb SINE Alu 1 302 -10 21 0 0 0 chr12 24795104 24795125 -118991330 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr12 24797290 24797315 -118989140 + (A)n Simple_repeat Simple_repeat 1 25 0 1211 7 0 0 chr12 24798280 24798458 -118987997 + L1PA4 LINE L1 6008 6185 0 401 244 161 39 chr12 24798693 24798898 -118987557 - MIR SINE MIR -30 232 3 241 276 0 17 chr12 24799475 24799533 -118986922 - MER91 DNA MER1_type 0 196 140 222 37 0 0 chr12 24800489 24800516 -118985939 + (TG)n Simple_repeat Simple_repeat 2 28 0 503 236 204 44 chr12 24800688 24800899 -118985556 + LTR33A LTR ERVL 226 484 -39 2044 118 0 35 chr12 24800899 24801212 -118985243 + AluSq SINE Alu 1 302 -11 503 236 204 44 chr12 24801212 24801250 -118985205 + LTR33A LTR ERVL 484 515 -8 24 0 0 0 chr12 24801263 24801287 -118985168 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr12 24801937 24801960 -118984495 + AT_rich Low_complexity Low_complexity 1 23 0 410 304 165 41 chr12 24802002 24802585 -118983870 + L3 LINE CR1 670 1324 -253 946 195 0 0 chr12 24802604 24802758 -118983697 - FRAM SINE Alu -22 154 1 272 270 40 0 chr12 24802762 24802836 -118983619 + L3 LINE CR1 1341 1417 -160 251 182 36 0 chr12 24803163 24803218 -118983237 + MLT1E2 LTR MaLR 95 151 -503 1609 268 21 8 chr12 24803291 24803672 -118982783 + MLT1E2 LTR MaLR 219 604 -22 2088 143 0 0 chr12 24803870 24804164 -118982291 + AluSx SINE Alu 2 295 -17 5048 71 9 4 chr12 24804299 24804977 -118981478 - L1PA7 LINE L1 -1 6153 5473 1503 180 17 20 chr12 24805005 24805300 -118981155 + AluJb SINE Alu 5 298 -14 298 169 0 14 chr12 24805731 24805802 -118980653 - L1MA7 LINE L1 -2 6289 6220 327 104 0 0 chr12 24806665 24806713 -118979742 + (CA)n Simple_repeat Simple_repeat 1 48 0 384 258 7 84 chr12 24807016 24807135 -118979320 + MER96 DNA MER1_type? 1 107 -68 2341 66 7 7 chr12 24807135 24807436 -118979019 - AluY SINE Alu -9 302 2 384 258 7 84 chr12 24807436 24807471 -118978984 + MER96 DNA MER1_type? 107 143 -32 2142 107 10 7 chr12 24807674 24807974 -118978481 + AluSq SINE Alu 1 301 -12 267 368 76 14 chr12 24808499 24808643 -118977812 + MIR3 SINE MIR 43 195 -13 250 286 18 62 chr12 24808796 24808908 -118977547 - MIR SINE MIR -1 261 155 1826 132 30 27 chr12 24808918 24809213 -118977242 - AluJb SINE Alu 0 312 17 506 149 23 0 chr12 24809454 24809541 -118976914 - MIR SINE MIR -102 160 72 209 274 0 16 chr12 24809814 24809876 -118976579 - MIR SINE MIR -132 76 16 480 249 225 0 chr12 24809910 24810079 -118976376 + MIR SINE MIR 56 262 0 196 335 63 0 chr12 24810324 24810412 -118976043 + MIR SINE MIR 37 130 -78 249 248 34 151 chr12 24811841 24812079 -118974376 + MLT1K LTR MaLR 379 588 0 1184 161 38 0 chr12 24814836 24815047 -118971408 - MER20 DNA MER1_type 0 219 1 225 0 0 0 chr12 24815530 24815555 -118970900 + (A)n Simple_repeat Simple_repeat 1 25 0 3298 184 40 7 chr12 24816254 24816926 -118969529 + MER50 LTR ERV1 29 722 -12 255 269 30 0 chr12 24816963 24817030 -118969425 + L2 LINE L2 3186 3254 -18 1574 199 78 49 chr12 24819385 24819811 -118966644 + MER39 LTR ERV1 270 707 0 182 328 17 17 chr12 24820480 24820538 -118965917 + L3b LINE CR1 1296 1353 -230 300 345 9 9 chr12 24820607 24820717 -118965738 + L2 LINE L2 2715 2824 -490 561 232 44 61 chr12 24820795 24820976 -118965479 + L2 LINE L2 3136 3313 0 223 357 104 13 chr12 24821457 24821611 -118964844 + L2 LINE L2 2908 3075 -197 1702 172 7 10 chr12 24821614 24821904 -118964551 + AluJo SINE Alu 13 301 -11 1187 258 53 45 chr12 24822119 24822568 -118963887 + L2 LINE L2 2258 2710 -604 1039 17 0 0 chr12 24822570 24822687 -118963768 - L1PA4 LINE L1 -262 5893 5777 1598 55 0 0 chr12 24822687 24822883 -118963572 + L1PA4 LINE L1 5955 6153 -2 764 224 17 6 chr12 24822941 24823120 -118963335 + L2 LINE L2 2728 2908 -406 322 333 0 10 chr12 24823166 24823265 -118963190 + L2 LINE L2 3205 3302 -11 233 384 58 0 chr12 24823288 24823374 -118963081 + L2 LINE L2 3182 3272 0 21 36 0 0 chr12 24824006 24824034 -118962421 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr12 24824914 24824934 -118961521 + (GGAA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr12 24825075 24825103 -118961352 + AT_rich Low_complexity Low_complexity 1 28 0 2028 113 20 3 chr12 24826284 24826586 -118959869 + AluSx SINE Alu 1 307 -5 815 275 133 17 chr12 24826590 24826950 -118959505 + MLT1J LTR MaLR 107 508 -3 467 226 186 0 chr12 24826990 24827114 -118959341 + MIR SINE MIR 116 262 0 500 374 59 7 chr12 24827772 24828058 -118958397 + L2 LINE L2 2440 2740 -574 254 322 41 112 chr12 24828202 24828444 -118958011 + L2 LINE L2 3001 3225 -47 2411 63 0 0 chr12 24828938 24829252 -118957203 + AluY SINE Alu 3 316 0 601 261 59 0 chr12 24831385 24831538 -118954917 + MER5A DNA MER1_type 7 168 -21 240 111 0 0 chr12 24831649 24831685 -118954770 + (TA)n Simple_repeat Simple_repeat 1 36 0 803 282 24 8 chr12 24832962 24833214 -118953241 + MIR SINE MIR 5 260 -2 211 259 0 52 chr12 24833408 24833466 -118952989 + MIR SINE MIR 57 111 -151 23 54 0 0 chr12 24833479 24833516 -118952939 + AT_rich Low_complexity Low_complexity 1 37 0 207 327 33 65 chr12 24833936 24834089 -118952366 + L3b LINE CR1 1269 1416 -167 269 306 81 46 chr12 24834339 24834512 -118951943 + MIR SINE MIR 58 236 -26 199 167 71 0 chr12 24834858 24834900 -118951555 + L2 LINE L2 3263 3307 -6 609 248 29 152 chr12 24834918 24835398 -118951057 + L2 LINE L2 2893 3313 0 2054 134 3 25 chr12 24835752 24835932 -118950523 - AluSq SINE Alu 0 313 142 1913 85 0 33 chr12 24835932 24836202 -118950253 - AluY SINE Alu -11 300 40 2054 134 3 25 chr12 24836202 24836341 -118950114 - AluSq SINE Alu -171 142 1 1782 145 70 25 chr12 24837543 24837902 -118948553 - THE1C LTR MaLR 0 375 1 2253 113 0 0 chr12 24838090 24838390 -118948065 + AluSx SINE Alu 1 300 -12 319 267 92 33 chr12 24838961 24839081 -118947374 + L2 LINE L2 3186 3312 -1 431 283 105 77 chr12 24839123 24839476 -118946979 + HAL1 LINE L1 25 387 -2120 254 355 54 16 chr12 24839587 24839773 -118946682 + HAL1 LINE L1 705 897 -1610 2225 104 7 13 chr12 24839917 24840225 -118946230 + AluSc SINE Alu 1 306 -3 856 278 50 43 chr12 24840481 24840898 -118945557 + HAL1 LINE L1 1364 1783 -724 217 44 0 67 chr12 24840900 24840945 -118945510 + (TAAAAA)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr12 24841849 24841870 -118944585 + AT_rich Low_complexity Low_complexity 1 21 0 342 293 29 73 chr12 24841873 24842146 -118944309 + L1ME4a LINE L1 3887 4147 -1999 287 263 72 20 chr12 24842730 24842882 -118943573 + L1ME4a LINE L1 5317 5476 -2332 444 281 101 46 chr12 24842942 24843270 -118943185 + L1ME4a LINE L1 5588 5933 -188 584 230 161 22 chr12 24843734 24843964 -118942491 - MIR SINE MIR 0 262 1 2170 97 4 0 chr12 24844424 24844742 -118941713 - AluY SINE Alu 0 319 1 2182 114 3 19 chr12 24845684 24845991 -118940464 - AluSx SINE Alu -10 302 1 25 51 0 0 chr12 24846342 24846381 -118940074 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr12 24846532 24846555 -118939900 + AT_rich Low_complexity Low_complexity 1 23 0 2434 121 3 22 chr12 24846941 24847312 -118939143 + THE1B LTR MaLR 1 364 0 443 241 57 35 chr12 24847328 24847469 -118938986 - L2 LINE L2 -2 3311 3168 210 91 0 0 chr12 24847479 24847512 -118938943 + (TC)n Simple_repeat Simple_repeat 2 34 0 360 0 0 0 chr12 24847514 24847554 -118938901 + (CA)n Simple_repeat Simple_repeat 1 40 0 377 347 163 29 chr12 24847710 24848085 -118938370 - L2 LINE L2 -340 2974 2550 354 289 108 31 chr12 24848111 24848536 -118937919 + LTR16A LTR ERVL 1 450 0 1806 161 11 3 chr12 24849544 24849829 -118936626 + AluJb SINE Alu 1 287 -25 466 279 80 80 chr12 24849925 24850302 -118936153 + LTR33A LTR ERVL 8 384 -139 557 329 108 38 chr12 24850590 24851144 -118935311 + L2 LINE L2 2135 2727 -587 273 194 37 19 chr12 24851776 24851884 -118934571 + (TA)n Simple_repeat Simple_repeat 2 111 0 217 311 11 56 chr12 24851978 24852068 -118934387 + L2 LINE L2 3184 3269 -3 2286 110 0 0 chr12 24852352 24852660 -118933795 + AluSc SINE Alu 1 308 -1 2215 114 0 3 chr12 24854804 24855101 -118931354 - AluSg SINE Alu -14 296 1 2082 36 0 0 chr12 24855140 24855387 -118931068 + L1PA5 LINE L1 5904 6150 -4 957 198 116 35 chr12 24855418 24855736 -118930719 - MER2 DNA MER2_type 0 345 2 881 130 31 6 chr12 24855740 24855901 -118930554 - L1MA8 LINE L1 -71 6220 6056 189 0 0 0 chr12 24856399 24856420 -118930035 + (A)n Simple_repeat Simple_repeat 1 21 0 2066 120 0 3 chr12 24856714 24857033 -118929422 - AluSx SINE Alu 0 318 1 2675 92 17 0 chr12 24857048 24857406 -118929049 + THE1B LTR MaLR 1 364 0 3489 181 7 14 chr12 24857621 24858310 -118928145 - L1MB2 LINE L1 -10 6161 5478 231 200 0 0 chr12 24858670 24858725 -118927730 - Alu SINE Alu -1 301 247 1661 157 26 0 chr12 24858726 24858993 -118927462 - AluJb SINE Alu -38 274 1 1694 173 0 37 chr12 24859120 24859438 -118927017 + AluSx SINE Alu 1 307 0 24 32 0 0 chr12 24859569 24859600 -118926855 + AT_rich Low_complexity Low_complexity 1 31 0 240 243 108 14 chr12 24859647 24859721 -118926734 + L2 LINE L2 3184 3264 -8 237 163 23 0 chr12 24861076 24861119 -118925336 - MER115 DNA AcHobo -9 684 641 599 310 20 40 chr12 24861138 24861338 -118925117 - MER115 DNA AcHobo -358 335 140 2296 81 0 10 chr12 24861992 24862288 -118924167 - AluSg SINE Alu -17 293 1 331 315 133 47 chr12 24862294 24863030 -118923425 - L2 LINE L2 -2 3311 2510 187 150 25 50 chr12 24863556 24863596 -118922859 + MER5A DNA MER1_type 14 52 -137 1084 60 0 0 chr12 24863644 24863777 -118922678 - AluY SINE Alu 0 311 179 193 345 42 8 chr12 24863800 24863919 -118922536 - MER5B DNA MER1_type -55 123 1 234 250 0 0 chr12 24864765 24864813 -118921642 + CT-rich Low_complexity Low_complexity 2 49 0 192 385 53 27 chr12 24865655 24865842 -118920613 - L2 LINE L2 -3 3269 3078 1642 171 10 10 chr12 24865910 24866220 -118920235 + AluSx SINE Alu 1 310 -2 2041 0 0 9 chr12 24866258 24866486 -118919969 - AluYa5 SINE Alu -85 226 1 1554 232 68 24 chr12 24866486 24866895 -118919560 + LTR40a LTR ERVL 93 519 0 665 322 24 5 chr12 24867100 24867311 -118919144 - MIR SINE MIR 0 262 48 268 329 70 80 chr12 24867386 24867672 -118918783 - L2 LINE L2 -69 3203 2921 23 0 0 0 chr12 24867828 24867851 -118918604 + AT_rich Low_complexity Low_complexity 1 23 0 250 232 0 0 chr12 24868727 24868783 -118917672 - L2 LINE L2 -4 3268 3213 266 257 54 0 chr12 24869238 24869312 -118917143 - MER69 DNA AcHobo -1 2525 2448 555 182 125 26 chr12 24869350 24869542 -118916913 - MER69 DNA AcHobo -317 2209 1999 * 760 236 143 117 chr12 24869528 24870082 -118916373 - MER69 DNA AcHobo -1958 568 1 377 281 13 7 chr12 24871790 24871943 -118914512 + (TA)n Simple_repeat Simple_repeat 2 155 0 1798 157 17 17 chr12 24872316 24872615 -118913840 - AluSx SINE Alu -13 299 1 306 67 0 0 chr12 24873673 24873718 -118912737 + (CA)n Simple_repeat Simple_repeat 2 46 0 1826 147 24 10 chr12 24874827 24875119 -118911336 - AluJb SINE Alu -16 296 1 267 299 299 6 chr12 24875363 24875530 -118910925 - MIR SINE MIR -17 245 30 23 0 0 0 chr12 24878704 24878727 -118907728 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 24879951 24879979 -118906476 + AT_rich Low_complexity Low_complexity 1 28 0 455 274 0 0 chr12 24880461 24880574 -118905881 - MLT1E LTR MaLR -456 137 25 203 307 67 53 chr12 24881418 24881643 -118904812 + L2 LINE L2 2302 2529 -785 2112 114 3 0 chr12 24882359 24882649 -118903806 - AluSx SINE Alu -21 291 1 608 177 31 31 chr12 24883745 24883875 -118902580 + AluJo SINE Alu 42 171 -141 298 328 45 22 chr12 24883911 24884045 -118902410 - MIR SINE MIR -42 220 84 181 229 0 0 chr12 24884156 24884191 -118902264 + L2 LINE L2 3171 3205 -67 612 0 0 0 chr12 24884198 24884266 -118902189 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 189 74 0 0 chr12 24884270 24884297 -118902158 + (CCCA)n Simple_repeat Simple_repeat 1 27 0 742 125 8 0 chr12 24884304 24884424 -118902031 + MER50 LTR ERV1 485 605 -129 267 122 0 0 chr12 24884510 24884559 -118901896 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 234 250 0 0 chr12 24884952 24885000 -118901455 + CT-rich Low_complexity Low_complexity 2 49 0 196 316 75 48 chr12 24885841 24886028 -118900427 - L2 LINE L2 -3 3269 3078 2061 116 10 10 chr12 24886096 24886406 -118900049 + AluSx SINE Alu 1 310 -2 453 298 81 19 chr12 24886473 24886634 -118899821 + L2 LINE L2 3143 3313 0 1177 75 0 0 chr12 24887020 24887166 -118899289 + AluY SINE Alu 152 297 -14 315 290 55 41 chr12 24887387 24887532 -118898923 - MIR SINE MIR 0 262 116 207 308 0 26 chr12 24888524 24888602 -118897853 + GA-rich Low_complexity Low_complexity 2 77 0 867 232 27 13 chr12 24889859 24890083 -118896372 + MIR SINE MIR 24 250 -12 261 83 0 0 chr12 24890149 24890185 -118896270 + (TG)n Simple_repeat Simple_repeat 1 36 0 30 59 0 0 chr12 24891566 24891617 -118894838 + AT_rich Low_complexity Low_complexity 1 51 0 369 0 0 0 chr12 24893046 24893087 -118893368 + (TA)n Simple_repeat Simple_repeat 1 41 0 245 307 108 28 chr12 24894929 24895105 -118891350 + MLT1K LTR MaLR 259 448 -140 209 265 29 15 chr12 24895435 24895503 -118890952 + GA-rich Low_complexity Low_complexity 1 69 0 311 325 32 32 chr12 24897103 24897229 -118889226 + L2 LINE L2 3144 3269 -3 439 340 108 10 chr12 24897458 24897661 -118888794 + MIR SINE MIR 13 235 -27 1446 215 47 85 chr12 24897778 24898272 -118888183 + MER77 LTR ERV1 123 597 -8 2312 79 0 10 chr12 24898734 24899037 -118887418 + AluY SINE Alu 1 300 -11 230 305 0 0 chr12 24899259 24899318 -118887137 - L2 LINE L2 -999 2315 2257 672 162 17 0 chr12 24899431 24899548 -118886907 - BC200 scRNA scRNA -81 119 1 1507 193 30 3 chr12 24899728 24900023 -118886432 + Tigger7 DNA MER2_type 6 308 -425 1983 128 6 64 chr12 24900025 24900163 -118886292 - MER1B DNA MER1_type -2373 339 195 2338 131 27 5 chr12 24900163 24900530 -118885925 + THE1C LTR MaLR 1 375 0 1983 128 6 64 chr12 24900530 24900751 -118885704 - MER1B DNA MER1_type -2517 195 1 2309 166 24 15 chr12 24900751 24901215 -118885240 + Tigger7 DNA MER2_type 303 770 -1717 668 175 0 0 chr12 24901215 24901335 -118885120 + Tigger7 DNA MER2_type 2118 2237 -250 255 204 37 0 chr12 24903784 24903838 -118882617 + CT-rich Low_complexity Low_complexity 2 57 0 1829 152 38 3 chr12 24904296 24904585 -118881870 + AluJo SINE Alu 5 303 -9 225 186 17 34 chr12 24905518 24905577 -118880878 + (TATG)n Simple_repeat Simple_repeat 2 59 0 2422 50 0 60 chr12 24905681 24905998 -118880457 - AluY SINE Alu -13 298 1 667 235 96 3 chr12 24906007 24906186 -118880269 - MIR SINE MIR -10 252 62 878 211 0 29 chr12 24906308 24906532 -118879923 + FRAM SINE Alu 1 83 0 224 281 0 18 chr12 24906587 24906644 -118879811 + CT-rich Low_complexity Low_complexity 1 56 0 223 314 76 34 chr12 24907073 24907191 -118879264 + MIR SINE MIR 14 136 -126 * 285 314 89 40 chr12 24907179 24907303 -118879152 + L2 LINE L2 3143 3272 0 290 189 207 18 chr12 24907304 24907415 -118879040 + MIR SINE MIR 130 261 -1 571 327 70 0 chr12 24907460 24907659 -118878796 + MIR SINE MIR 33 245 -17 1124 143 30 0 chr12 24907847 24908015 -118878440 + AluJb SINE Alu 129 301 -11 21 0 0 0 chr12 24908035 24908056 -118878399 + AT_rich Low_complexity Low_complexity 1 21 0 947 227 14 5 chr12 24908086 24908293 -118878162 + MER6B DNA MER2_type 1 209 -1 209 108 27 0 chr12 24908355 24908392 -118878063 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1348 89 139 0 chr12 24909341 24909543 -118876912 - MER30 DNA MER1_type 0 230 1 507 281 56 0 chr12 24910327 24910505 -118875950 + LTR33 LTR ERVL 27 214 -307 236 291 0 97 chr12 24910567 24910670 -118875785 + LTR33 LTR ERVL 330 422 -99 1654 173 22 28 chr12 24910670 24911034 -118875421 - L1MB8 LINE L1 -6 6172 5811 3798 20 0 2 chr12 24911034 24911468 -118874987 - L1PA3 LINE L1 -3 6152 5713 934 73 102 0 chr12 24911489 24911626 -118874829 - L1PA11 LINE L1 -3 6171 6021 1980 151 34 8 chr12 24911628 24912013 -118874442 - L1MB8 LINE L1 -359 5825 5431 253 262 39 19 chr12 24912014 24912117 -118874338 + LTR33 LTR ERVL 409 513 -8 476 319 134 23 chr12 24912138 24912445 -118874010 - L3 LINE CR1 -321 1256 916 3258 120 39 32 chr12 24912509 24913068 -118873387 - L1PB4 LINE L1 -8 6148 5586 1701 111 9 0 chr12 24913169 24913445 -118873010 - L1PB4 LINE L1 -596 5560 5281 447 354 180 5 chr12 24913588 24913955 -118872500 - L3 LINE CR1 -899 678 248 957 290 137 32 chr12 24914145 24914955 -118871500 + L2 LINE L2 2405 3313 0 507 216 8 8 chr12 24917077 24917202 -118869253 - AluSc SINE Alu -184 125 1 1989 220 102 74 chr12 24917203 24917273 -118869182 - MER69B DNA AcHobo -1608 918 851 1514 188 14 14 chr12 24917273 24917555 -118868900 + AluJb SINE Alu 1 282 -30 1989 220 102 74 chr12 24917555 24918351 -118868104 - MER69B DNA AcHobo -1675 851 28 1019 197 131 60 chr12 24919944 24920123 -118866332 + MER58D DNA MER1_type 6 171 -2249 2238 113 0 0 chr12 24920123 24920423 -118866032 + AluSg SINE Alu 1 300 -10 1019 197 131 60 chr12 24920423 24920479 -118865976 + MER58D DNA MER1_type 171 222 -2198 1842 174 7 0 chr12 24920479 24920789 -118865666 + AluJo SINE Alu 1 312 0 1019 197 131 60 chr12 24920789 24920903 -118865552 + MER58D DNA MER1_type 222 381 -5 404 336 98 15 chr12 24921149 24921414 -118865041 + L1ME LINE L1 5436 5722 -399 382 205 12 0 chr12 24921606 24921689 -118864766 - MER69 DNA AcHobo -8 2518 2435 * 435 325 37 29 chr12 24921684 24921927 -118864528 - MER69 DNA AcHobo -2279 247 3 300 252 165 9 chr12 24922377 24922492 -118863963 + L2 LINE L2 3180 3312 -1 1843 163 125 24 chr12 24923811 24924235 -118862220 + MLT1C LTR MaLR 1 467 0 688 311 85 11 chr12 24926981 24927251 -118859204 - L2 LINE L2 -188 3125 2836 5779 208 86 54 chr12 24927365 24927847 -118858608 - L1MD1 LINE L1 -6 6236 5771 4952 75 1 18 chr12 24927847 24928518 -118857937 + L1PA8A LINE L1 5462 6121 -10 5779 208 86 54 chr12 24928518 24929054 -118857401 - L1MD1 LINE L1 -471 5771 5253 1951 163 0 0 chr12 24929054 24929349 -118857106 - AluJb SINE Alu -17 295 1 5779 208 86 54 chr12 24929349 24931827 -118854628 - L1MD1 LINE L1 -989 5253 2640 2200 50 90 4 chr12 24931827 24932106 -118854349 - AluY SINE Alu -8 303 1 5779 208 86 54 chr12 24932106 24932179 -118854276 - L1MD1 LINE L1 -3602 2640 2571 275 296 0 11 chr12 24936015 24936103 -118850352 + MIR SINE MIR 176 262 0 328 106 0 0 chr12 24936992 24937039 -118849416 + MLT1L LTR MaLR 148 194 -421 1714 145 3 61 chr12 24937812 24938123 -118848332 - AluSx SINE Alu -19 293 1 2076 220 76 53 chr12 24938883 24939741 -118846714 + L1MC5 LINE L1 6708 7531 -430 239 274 60 36 chr12 24939856 24940024 -118846431 + L1ME3A LINE L1 5999 6170 0 254 264 70 10 chr12 24940983 24941133 -118845322 + MLT1I LTR MaLR 67 221 -188 1902 179 7 0 chr12 24941414 24941722 -118844733 + AluJo SINE Alu 3 312 0 825 179 0 7 chr12 24944741 24944913 -118841542 + AluSg/x SINE Alu 139 309 0 1787 51 34 17 chr12 24944913 24945147 -118841308 + L1PA6 LINE L1 5904 6141 -13 191 296 0 0 chr12 24945961 24946015 -118840440 + MIR SINE MIR 203 256 -6 27 0 0 26 chr12 24947134 24947154 -118839301 + AT_rich Low_complexity Low_complexity 1 21 -16 681 164 112 0 chr12 24947154 24947270 -118839185 + FLAM_A SINE Alu 5 133 0 27 0 0 26 chr12 24947270 24947287 -118839168 + AT_rich Low_complexity Low_complexity 21 37 0 298 245 41 0 chr12 24947403 24947505 -118838950 + MIR SINE MIR 34 120 -142 2217 82 0 0 chr12 24947563 24947893 -118838562 + AluY SINE Alu 1 330 0 390 42 0 0 chr12 24948131 24948179 -118838276 + (CA)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr12 24948975 24948999 -118837456 + AT_rich Low_complexity Low_complexity 1 24 0 264 343 0 9 chr12 24949380 24949488 -118836967 + MIR3 SINE MIR 97 203 -5 347 333 0 1 chr12 24949664 24949777 -118836678 - MIR SINE MIR -70 138 38 1177 210 10 23 chr12 24949913 24950218 -118836237 - L1MA10 LINE L1 -11 6323 6023 567 292 59 14 chr12 24950700 24950919 -118835536 + MIR SINE MIR 23 251 -11 2189 99 11 0 chr12 24951060 24951343 -118835112 + AluSc SINE Alu 1 286 -23 21 0 0 0 chr12 24951612 24951633 -118834822 + AT_rich Low_complexity Low_complexity 1 21 0 332 348 85 26 chr12 24952396 24952773 -118833682 - L2 LINE L2 -1110 2204 1806 2586 123 44 7 chr12 24953035 24953448 -118833007 + MSTA LTR MaLR 1 428 0 425 298 153 43 chr12 24953595 24953968 -118832487 + MLT1K LTR MaLR 175 588 0 219 180 0 100 chr12 24954073 24954123 -118832332 + L2 LINE L2 3254 3298 -15 14300 128 12 26 chr12 24954236 24955733 -118830722 + Tigger1 DNA MER2_type 6 1456 -962 7109 49 9 0 chr12 24955733 24956967 -118829488 + L1PA7 LINE L1 4876 6152 -2 14300 128 12 26 chr12 24956967 24957917 -118828538 + Tigger1 DNA MER2_type 1456 2418 0 2142 116 0 3 chr12 24958142 24958445 -118828010 + AluY SINE Alu 3 304 -7 226 315 0 0 chr12 24958489 24958543 -118827912 + L2 LINE L2 3218 3271 -1 414 0 0 0 chr12 24959122 24959168 -118827287 + (TG)n Simple_repeat Simple_repeat 1 46 0 993 276 63 72 chr12 24960816 24961394 -118825061 - L2 LINE L2 0 3313 2736 2145 115 7 7 chr12 24961476 24961780 -118824675 - AluSx SINE Alu -8 304 1 306 0 0 0 chr12 24962798 24962832 -118823623 + (TG)n Simple_repeat Simple_repeat 1 34 0 190 200 0 25 chr12 24962850 24962890 -118823565 - MIR SINE MIR -112 150 112 1050 280 55 15 chr12 24963099 24963499 -118822956 + LTR16A LTR ERVL 28 443 -7 196 352 70 28 chr12 24963904 24964046 -118822409 + L3 LINE CR1 190 337 -1240 249 396 63 19 chr12 24964113 24964272 -118822183 + L3 LINE CR1 467 632 -945 1033 308 100 45 chr12 24964588 24965246 -118821209 - L2 LINE L2 -7 3306 2592 2784 301 50 21 chr12 24965395 24966280 -118820175 + L1MC3 LINE L1 6865 7774 -11 294 379 121 7 chr12 24966320 24966452 -118820003 + L3 LINE CR1 992 1108 -469 1808 123 84 21 chr12 24966452 24966736 -118819719 + AluSx SINE Alu 1 302 -10 294 379 121 7 chr12 24966736 24966875 -118819580 + L3 LINE CR1 1108 1294 -283 1134 298 187 6 chr12 24967322 24968211 -118818244 + L2 LINE L2 2230 3309 -4 309 185 82 96 chr12 24968727 24968873 -118817582 - MER103 DNA DNA -20 146 3 5145 119 39 17 chr12 24968889 24969014 -118817441 - L1MA3 LINE L1 0 6305 6184 392 0 0 20 chr12 24969014 24969063 -118817392 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 2005 125 14 4 chr12 24969063 24969342 -118817113 - AluSx SINE Alu -30 282 1 5145 119 39 17 chr12 24969342 24970120 -118816335 - L1MA3 LINE L1 -120 6185 5381 441 317 16 48 chr12 24970191 24970377 -118816078 + MIR SINE MIR 13 192 -70 202 284 102 11 chr12 24970998 24971086 -118815369 + L3 LINE CR1 1475 1570 -7 22 0 0 0 chr12 24971591 24971613 -118814842 + AT_rich Low_complexity Low_complexity 1 22 0 417 286 36 41 chr12 24974375 24974571 -118811884 + LTR16A LTR ERVL 144 338 -112 283 335 55 37 chr12 24974682 24974846 -118811609 - MIR3 SINE MIR -26 182 16 295 333 44 0 chr12 24975073 24975187 -118811268 - MIR SINE MIR -42 220 102 419 170 21 0 chr12 24976533 24976627 -118809828 - MER53 DNA DNA 0 189 94 278 230 264 0 chr12 24976631 24976718 -118809737 - MER5A DNA MER1_type -21 168 59 614 233 28 40 chr12 24976993 24977169 -118809286 + MER5B DNA MER1_type 1 174 -4 614 245 148 0 chr12 24977188 24977343 -118809112 + MER5A DNA MER1_type 11 188 -1 1290 167 12 4 chr12 25180127 25180378 -118606077 - L1M2 LINE L1 -681 5631 5379 1465 192 112 0 chr12 25180383 25180706 -118605749 - MER47A DNA MER2_type -6 360 2 2672 175 27 0 chr12 25180712 25181272 -118605183 - L1M2 LINE L1 -769 5377 4803 1728 250 150 18 chr12 25181375 25181662 -118604793 - L1ME LINE L1 -5191 879 631 612 27 0 0 chr12 25181662 25181736 -118604719 + (CTTTG)n Simple_repeat Simple_repeat 1 74 0 1728 250 150 18 chr12 25181736 25182220 -118604235 - L1ME LINE L1 -5439 631 6 1101 287 83 16 chr12 25182259 25182691 -118603764 - L2 LINE L2 -1457 1857 1397 4278 156 62 5 chr12 25182914 25183743 -118602712 + L1MA3 LINE L1 5430 6305 0 325 316 53 0 chr12 25183768 25183882 -118602573 + MIR3 SINE MIR 72 191 -17 228 67 0 0 chr12 25185211 25185241 -118601214 + (TG)n Simple_repeat Simple_repeat 1 30 0 2220 103 13 10 chr12 25185642 25185953 -118600502 - AluSq SINE Alu -1 312 1 1541 141 8 27 chr12 25185955 25186218 -118600237 - AluJb SINE Alu -22 290 33 485 189 136 18 chr12 25186501 25186670 -118599785 + MER53 DNA DNA 1 189 0 183 80 0 0 chr12 25187372 25187397 -118599058 + (CA)n Simple_repeat Simple_repeat 1 25 0 332 308 58 29 chr12 25188353 25188525 -118597930 + MER5B DNA MER1_type 1 177 -1 22 0 0 0 chr12 25189329 25189351 -118597104 + AT_rich Low_complexity Low_complexity 1 22 0 448 262 53 39 chr12 25189490 25189849 -118596606 + L1ME LINE L1 2854 3217 -2929 253 349 42 12 chr12 25189937 25190269 -118596186 + L1ME LINE L1 4204 4545 -1601 1433 213 4 4 chr12 25190299 25190562 -118595893 - AluJo SINE Alu -49 263 1 809 241 104 68 chr12 25190582 25190992 -118595463 + L1ME LINE L1 4568 4962 -1202 5125 45 3 10 chr12 25190992 25191589 -118594866 - SVA Other Other 0 1386 794 809 241 104 68 chr12 25191589 25191604 -118594851 + L1ME LINE L1 4962 4975 -1189 1707 161 6 35 chr12 25191604 25191915 -118594540 - AluJb SINE Alu -2 310 9 809 241 104 68 chr12 25191915 25192443 -118594012 + L1ME LINE L1 4975 5565 -599 2258 101 0 3 chr12 25192443 25192740 -118593715 + AluSg SINE Alu 2 297 -13 809 241 104 68 chr12 25192740 25192810 -118593645 + L1ME LINE L1 5565 5631 -533 911 208 193 41 chr12 25192862 25193256 -118593199 + MLT2B1 LTR ERVL 3 456 -64 6997 162 11 24 chr12 25193361 25194837 -118591618 - L1 LINE L1 -1307 5860 4404 1641 237 38 40 chr12 25194817 25195806 -118590649 - L1 LINE L1 -4805 2293 1 * 2844 236 49 15 chr12 25196029 25197171 -118589284 + L1ME1 LINE L1 4980 6162 -4 1998 194 9 13 chr12 25197293 25197852 -118588603 + L1M1 LINE L1 4911 5471 -743 562 204 204 6 chr12 25198232 25198394 -118588061 - MIR SINE MIR 0 262 69 1265 190 43 23 chr12 25198394 25198768 -118587687 - MSTB2 LTR MaLR 0 457 1 242 228 88 0 chr12 25198768 25198825 -118587630 - MIR SINE MIR -189 73 12 729 285 25 63 chr12 25199189 25199586 -118586869 + LTR16B LTR ERVL 81 462 -2 2256 110 0 3 chr12 25199873 25200182 -118586273 - AluSg SINE Alu -2 308 1 1117 226 12 20 chr12 25200614 25200866 -118585589 + MIR SINE MIR 2 251 -11 202 140 20 20 chr12 25200896 25200946 -118585509 + (TA)n Simple_repeat Simple_repeat 1 50 0 186 133 0 0 chr12 25201010 25201040 -118585415 + (CA)n Simple_repeat Simple_repeat 2 31 0 629 265 50 40 chr12 25201264 25201464 -118584991 + MIR SINE MIR 49 250 -12 267 31 0 0 chr12 25202138 25202170 -118584285 + (CAA)n Simple_repeat Simple_repeat 2 33 0 373 249 90 90 chr12 25204216 25204380 -118582075 + HAL1 LINE L1 2121 2287 -220 2883 6 0 0 chr12 25204380 25204692 -118581763 - AluYb8 SINE Alu -6 312 1 373 249 90 90 chr12 25204692 25204772 -118581683 + HAL1 LINE L1 2286 2365 -142 456 308 41 0 chr12 25205215 25205361 -118581094 - MIR SINE MIR -19 243 92 622 343 100 23 chr12 25205896 25206612 -118579843 + L2 LINE L2 2538 3313 0 554 297 151 5 chr12 25207209 25207428 -118579027 + MIR SINE MIR 5 255 -7 225 0 0 0 chr12 25208443 25208468 -118577987 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 247 274 263 6 chr12 25210283 25210458 -118575997 + L3b LINE CR1 1113 1332 -251 183 184 26 0 chr12 25210650 25210688 -118575767 - L2 LINE L2 -19 3294 3256 1018 201 63 17 chr12 25210918 25211157 -118575298 + LTR40c LTR ERVL 5 254 -211 1205 293 47 43 chr12 25211165 25211746 -118574709 + HERVL40 LTR ERVL 4162 4744 -786 324 148 0 0 chr12 25214617 25214678 -118571777 + (TG)n Simple_repeat Simple_repeat 2 62 0 25 0 0 0 chr12 25214874 25214899 -118571556 + GC_rich Low_complexity Low_complexity 1 25 0 194 79 0 26 chr12 25214902 25214940 -118571515 + (CGGGGG)n Simple_repeat Simple_repeat 5 41 0 444 19 0 0 chr12 25215651 25215704 -118570751 + (CA)n Simple_repeat Simple_repeat 1 53 0 387 315 60 0 chr12 25218077 25218093 -118568362 + MIR SINE MIR 100 114 -148 1961 137 3 43 chr12 25218093 25218415 -118568040 - AluSc SINE Alu 0 309 1 387 315 60 0 chr12 25218415 25218547 -118567908 + MIR SINE MIR 114 257 -5 1069 272 117 2 chr12 25219277 25219678 -118566777 - LTR16B LTR ERVL 0 464 18 241 268 98 0 chr12 25219831 25219913 -118566542 + MIR SINE MIR 110 199 -63 184 311 214 10 chr12 25221928 25222031 -118564424 + L2 LINE L2 3143 3266 -6 482 256 151 19 chr12 25222095 25222317 -118564138 - MIR SINE MIR -6 256 6 207 275 14 29 chr12 25222350 25222419 -118564036 + MIR SINE MIR 125 192 -70 1293 189 20 96 chr12 25222462 25222806 -118563649 - AluYb8 SINE Alu 0 318 1 485 278 16 26 chr12 25222980 25223171 -118563284 + MER5A DNA MER1_type 1 189 0 214 200 0 0 chr12 25225080 25225120 -118561335 + T-rich Low_complexity Low_complexity 1 40 0 195 42 0 0 chr12 25226888 25226912 -118559543 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 24046 82 37 6 chr12 25226912 25232819 -118553636 - L1PA6 LINE L1 -11 6143 11 24 0 0 0 chr12 25233028 25233052 -118553403 + AT_rich Low_complexity Low_complexity 1 24 0 190 314 86 48 chr12 25234525 25234630 -118551825 + MIR SINE MIR 33 141 -67 1940 94 4 0 chr12 25234653 25234907 -118551548 + AluSg SINE Alu 44 298 -12 5499 147 45 0 chr12 25235082 25236206 -118550249 - L1MC1 LINE L1 0 6333 5122 2641 229 27 7 chr12 25236317 25237029 -118549426 - L1MC1 LINE L1 -1278 4868 4143 248 287 35 0 chr12 25239113 25239200 -118547255 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 403 81 0 0 chr12 25239725 25239787 -118546668 - L1MA1 LINE L1 0 6302 6241 231 287 86 57 chr12 25240020 25240229 -118546226 + L1MC4a LINE L1 4630 4844 -1302 410 321 80 53 chr12 25240658 25241197 -118545258 + L1MC4a LINE L1 5399 5967 -154 675 310 29 8 chr12 25244211 25244453 -118542002 - MIR SINE MIR 0 262 16 191 196 250 0 chr12 25245012 25245068 -118541387 + MER5A DNA MER1_type 114 183 -6 305 241 69 0 chr12 25245819 25245906 -118540549 - MLT1J LTR MaLR -4 507 415 435 335 63 11 chr12 25245937 25246128 -118540327 - MLT1J LTR MaLR -307 204 4 838 214 0 22 chr12 25246616 25246798 -118539657 + FRAM SINE Alu 1 173 -3 2427 237 61 26 chr12 25246819 25247472 -118538983 + HERVL40 LTR ERVL 4853 5528 -2 1081 229 243 14 chr12 25247476 25247843 -118538612 + LTR40c LTR ERVL 3 453 -12 619 300 69 48 chr12 25248094 25248570 -118537885 + MLT1J LTR MaLR 7 492 -19 316 253 106 73 chr12 25248792 25249065 -118537390 + MLT1K LTR MaLR 184 465 -123 224 306 47 80 chr12 25249250 25249525 -118536930 - L2 LINE L2 -183 3089 2824 302 319 49 12 chr12 25249568 25249731 -118536724 - L2 LINE L2 -578 2736 2568 861 303 61 44 chr12 25249734 25249943 -118536512 - LTR16B LTR ERVL -12 452 248 2109 137 126 8 chr12 25249943 25250324 -118536131 - MSTA LTR MaLR -2 426 1 861 303 61 44 chr12 25250324 25250526 -118535929 - LTR16B LTR ERVL -216 248 34 211 305 8 99 chr12 25250803 25250934 -118535521 - L2 LINE L2 -15 3298 3180 1195 127 52 38 chr12 25250971 25251183 -118535272 + AluJo SINE Alu 82 296 -16 802 220 11 32 chr12 25252844 25253030 -118533425 - MIR SINE MIR -6 256 75 2623 192 61 68 chr12 25253206 25254793 -118531662 + L1MCa LINE L1 64 1488 -4852 1609 218 62 25 chr12 25254833 25255233 -118531222 + MLT1C LTR MaLR 53 467 0 1673 216 100 61 chr12 25255242 25255915 -118530540 + L1MCa LINE L1 1692 2343 -4221 7816 19 0 0 chr12 25255915 25257595 -118528860 + L1PA3 LINE L1 4476 6155 0 1673 216 100 61 chr12 25257595 25257811 -118528644 + L1MCa LINE L1 2343 2549 -4015 2514 143 7 24 chr12 25257811 25258230 -118528225 - Tigger2a DNA MER2_type 0 434 23 203 59 0 29 chr12 25259432 25259466 -118526989 + (CCCCCA)n Simple_repeat Simple_repeat 4 36 0 870 85 78 0 chr12 25259697 25259826 -118526629 + MER85 DNA T2_type 1 139 0 627 217 87 25 chr12 25260038 25260199 -118526256 - MIR SINE MIR -10 252 82 288 174 0 0 chr12 25260218 25260264 -118526191 - Tigger2a DNA MER2_type -388 46 1 2668 249 33 30 chr12 25260266 25261866 -118524589 + L1MCa LINE L1 2550 4334 -2230 2192 125 0 0 chr12 25263169 25263473 -118522982 + AluY SINE Alu 1 304 -7 1825 135 35 19 chr12 25263660 25263972 -118522483 + MER2 DNA MER2_type 29 345 0 30 59 0 0 chr12 25264088 25264139 -118522316 + AT_rich Low_complexity Low_complexity 1 51 0 1810 188 0 0 chr12 25264195 25264483 -118521972 + AluJb SINE Alu 3 290 -22 223 71 48 0 chr12 25264484 25264526 -118521929 + (TA)n Simple_repeat Simple_repeat 1 44 0 703 233 7 0 chr12 25264700 25264846 -118521609 - MER45A DNA AcHobo -20 158 12 276 311 15 7 chr12 25264871 25265006 -118521449 + (TA)n Simple_repeat Simple_repeat 2 137 0 369 354 133 0 chr12 25265657 25265883 -118520572 - MIR SINE MIR -6 256 1 1556 308 95 63 chr12 25265888 25266944 -118519511 - L3 LINE CR1 -30 1547 459 375 281 74 30 chr12 25269017 25269152 -118517303 + MIR SINE MIR 116 256 -6 231 216 52 93 chr12 25269144 25269241 -118517214 - MIR SINE MIR -64 198 106 * 197 0 71 0 chr12 25269435 25269463 -118516992 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 3590 53 2 7 chr12 25269463 25269918 -118516537 - L1PA7 LINE L1 -16 6138 5686 2303 56 0 69 chr12 25272252 25272571 -118513884 + AluY SINE Alu 1 297 -14 25 0 0 0 chr12 25272710 25272735 -118513720 + AT_rich Low_complexity Low_complexity 1 25 0 246 32 0 0 chr12 25272774 25272805 -118513650 + (TC)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr12 25272804 25272828 -118513627 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 333 0 0 0 chr12 25272827 25272864 -118513591 + (GA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr12 25272891 25272916 -118513539 + AT_rich Low_complexity Low_complexity 1 25 0 239 0 32 0 chr12 25273111 25273142 -118513313 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2106 45 52 11 chr12 25273150 25273419 -118513036 - AluY SINE Alu -31 280 1 28 29 0 0 chr12 25273602 25273637 -118512818 + AT_rich Low_complexity Low_complexity 1 35 0 210 37 0 0 chr12 25273992 25274019 -118512436 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2386 58 7 10 chr12 25275082 25275392 -118511063 - AluSc SINE Alu 0 309 1 1552 196 0 0 chr12 25275416 25275682 -118510773 + AluJo SINE Alu 1 266 -46 401 280 63 63 chr12 25275975 25276259 -118510196 + MLT1I LTR MaLR 35 288 -121 24 32 0 0 chr12 25276680 25276711 -118509744 + AT_rich Low_complexity Low_complexity 1 31 0 590 181 0 43 chr12 25277290 25277478 -118508977 + GA-rich Low_complexity Low_complexity 1 180 0 1988 115 14 0 chr12 25278430 25278708 -118507747 + AluSc SINE Alu 1 282 -27 495 0 0 0 chr12 25278708 25278763 -118507692 + (CA)n Simple_repeat Simple_repeat 2 56 0 228 163 23 0 chr12 25279724 25279767 -118506688 - L2 LINE L2 -1 3312 3269 210 118 0 0 chr12 25279993 25280027 -118506428 + (CA)n Simple_repeat Simple_repeat 2 35 0 228 35 0 0 chr12 25280169 25280198 -118506257 + (TC)n Simple_repeat Simple_repeat 1 29 0 238 369 70 56 chr12 25280991 25281346 -118505109 + L3 LINE CR1 1 360 -1217 209 139 23 23 chr12 25281410 25281453 -118505002 + GA-rich Low_complexity Low_complexity 5 47 0 1383 178 8 0 chr12 25281506 25281742 -118504713 + L1PB4 LINE L1 5912 6149 -7 1519 156 68 4 chr12 25282181 25282476 -118503979 - AluSg SINE Alu 0 312 1 519 335 74 4 chr12 25282604 25282834 -118503621 - MIR SINE MIR -12 250 5 435 301 36 87 chr12 25283003 25283335 -118503120 + L3 LINE CR1 904 1218 -359 249 33 0 0 chr12 25283375 25283405 -118503050 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 226 293 67 133 chr12 25283450 25283795 -118502660 - L2 LINE L2 -37 3235 2914 738 189 0 0 chr12 25283822 25283944 -118502511 - Tigger3b DNA MER2_type 0 1232 1111 * 1705 215 35 19 chr12 25283939 25284049 -118502406 + MER82 DNA MER2_type 272 379 -274 207 0 0 0 chr12 25284049 25284072 -118502383 + (CA)n Simple_repeat Simple_repeat 2 24 0 1705 215 35 19 chr12 25284072 25284337 -118502118 + MER82 DNA MER2_type 379 653 0 254 312 32 24 chr12 25284568 25284693 -118501762 - L2 LINE L2 -2977 337 212 22 35 0 0 chr12 25284782 25284811 -118501644 + AT_rich Low_complexity Low_complexity 1 29 0 3307 89 0 24 chr12 25284811 25285314 -118501141 - L1MA2 LINE L1 0 6304 5814 6245 61 15 0 chr12 25285314 25286115 -118500340 - L1PA7 LINE L1 -14 6140 5328 * 15328 123 25 35 chr12 25286091 25288750 -118497705 - L1PA12 LINE L1 -2973 4611 1148 21662 147 29 26 chr12 25288784 25291645 -118494810 - L1MA3 LINE L1 -475 7249 4397 2033 98 6 80 chr12 25291645 25291981 -118494474 - AluSq SINE Alu -2 311 1 21662 147 29 26 chr12 25291981 25293030 -118493425 - L1MA3 LINE L1 -3327 4397 3352 203 79 26 0 chr12 25293030 25293068 -118493387 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 21662 147 29 26 chr12 25293068 25296373 -118490082 - L1MA3 LINE L1 -4372 3352 16 371 349 81 36 chr12 25296539 25296555 -118489900 - L2 LINE L2 -866 2448 2434 1090 197 57 111 chr12 25296555 25296619 -118489836 - MLT1A1 LTR MaLR 0 365 299 2502 67 0 13 chr12 25296619 25296934 -118489521 + AluY SINE Alu 1 311 0 1090 197 57 111 chr12 25296934 25297255 -118489200 - MLT1A1 LTR MaLR -66 299 1 371 349 81 36 chr12 25297255 25297596 -118488859 - L2 LINE L2 -880 2434 2075 450 354 85 5 chr12 25297758 25297970 -118488485 + L3 LINE CR1 1335 1563 -14 227 313 84 56 chr12 25298438 25298504 -118487951 + LTR16C LTR ERVL 308 371 -120 1489 193 144 23 chr12 25298504 25298857 -118487598 + MSTD LTR MaLR 1 396 0 227 313 84 56 chr12 25298857 25298969 -118487486 + LTR16C LTR ERVL 371 491 0 322 273 73 0 chr12 25299572 25299682 -118486773 - MIR SINE MIR -77 185 68 393 254 173 0 chr12 25299831 25299941 -118486514 + L2 LINE L2 3132 3260 -12 294 260 10 50 chr12 25299995 25300095 -118486360 - L2 LINE L2 -98 3215 3120 2082 292 41 27 chr12 25300098 25300222 -118486233 - L2 LINE L2 -298 3015 2894 2122 94 7 0 chr12 25300222 25300499 -118485956 + AluY SINE Alu 1 279 -32 243 0 0 0 chr12 25300500 25300527 -118485928 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2082 292 41 27 chr12 25300527 25301110 -118485345 - L2 LINE L2 -418 2895 2295 707 279 18 14 chr12 25301110 25301332 -118485123 - L2 LINE L2 -1277 2037 1815 799 284 13 7 chr12 25301358 25301624 -118484831 + L1MC5 LINE L1 6643 6868 -1093 296 297 22 7 chr12 25301631 25301769 -118484686 + L1MEc LINE L1 51 190 -6206 1151 243 83 46 chr12 25302134 25302653 -118483802 + L1MC5 LINE L1 7016 7553 -408 6500 140 42 12 chr12 25302695 25303825 -118482630 + Tigger3b DNA MER2_type 2 1165 -66 484 160 0 112 chr12 25303938 25304063 -118482392 + MLT2B1 LTR ERVL 410 520 0 255 257 53 9 chr12 25304068 25304181 -118482274 + L1ME LINE L1 5684 5801 -361 276 209 42 112 chr12 25304198 25304413 -118482042 + L1ME3A LINE L1 5752 5951 -219 331 184 276 10 chr12 25304472 25304570 -118481885 + Tigger4(Zombi) DNA MER2_type 1 124 -2607 * 950 135 119 0 chr12 25304564 25304749 -118481706 + Tigger4(Zombi) DNA MER2_type 2523 2729 -2 1438 187 14 103 chr12 25304919 25305318 -118481137 - MLT1A1 LTR MaLR -3 423 1 227 327 0 0 chr12 25305571 25305623 -118480832 + L2 LINE L2 3213 3264 -8 2249 113 3 0 chr12 25305861 25306163 -118480292 - AluSx SINE Alu -9 303 1 479 283 102 16 chr12 25306171 25306358 -118480097 + Charlie8 DNA MER1_type 44 246 -2171 617 337 28 20 chr12 25308065 25308320 -118478135 + MIR SINE MIR 6 262 0 189 213 0 0 chr12 25308382 25308429 -118478026 + (TG)n Simple_repeat Simple_repeat 2 48 0 9173 79 3 0 chr12 25312180 25314190 -118472265 - L1PA7 LINE L1 -4 6150 4136 281 301 70 20 chr12 25314432 25314631 -118471824 + MER113 DNA MER1_type? 11 219 -302 25 51 0 0 chr12 25314665 25314704 -118471751 + AT_rich Low_complexity Low_complexity 1 39 0 397 313 88 0 chr12 25314772 25314954 -118471501 + MER113 DNA MER1_type? 324 521 0 280 281 0 0 chr12 25315026 25315083 -118471372 + L2 LINE L2 3256 3312 -1 328 310 139 8 chr12 25315289 25315418 -118471037 + MLT1K LTR MaLR 376 521 -67 298 345 101 52 chr12 25315596 25315903 -118470552 + L2 LINE L2 2951 3272 0 475 328 165 26 chr12 25318788 25319316 -118467139 + L2 LINE L2 1327 1927 -1387 1412 142 54 23 chr12 25319329 25319556 -118466899 + L1PA16 LINE L1 5899 6136 -30 2018 198 54 5 chr12 25319556 25319961 -118466494 - MSTB LTR MaLR 0 426 2 1412 142 54 23 chr12 25319961 25319993 -118466462 + L1PA16 LINE L1 6136 6166 0 36 0 0 0 chr12 25320035 25320071 -118466384 + AT_rich Low_complexity Low_complexity 1 36 0 2158 100 3 29 chr12 25320127 25320437 -118466018 - AluY SINE Alu -7 304 3 222 325 117 26 chr12 25320453 25320684 -118465771 + L2 LINE L2 1999 2250 -1064 426 353 81 4 chr12 25320692 25320964 -118465491 + L2 LINE L2 2569 2861 -453 403 257 40 47 chr12 25322325 25322473 -118463982 - MLT1I LTR MaLR -262 147 1 499 306 68 28 chr12 25322872 25323120 -118463335 - MIR SINE MIR -3 259 2 340 312 24 71 chr12 25323414 25323584 -118462871 + L2 LINE L2 3152 3313 0 236 240 450 0 chr12 25323605 25323734 -118462721 - MIR SINE MIR -29 233 47 4657 162 33 9 chr12 25328846 25330050 -118456405 + L1MB7 LINE L1 4963 6334 0 2338 112 0 0 chr12 25330359 25330671 -118455784 + AluSx SINE Alu 1 312 0 312 296 16 16 chr12 25330674 25330799 -118455656 + L1MEc LINE L1 1706 1830 -4566 * 335 221 5 69 chr12 25330793 25330861 -118455594 + L1ME1 LINE L1 6024 6079 -85 2272 87 0 7 chr12 25330861 25331160 -118455295 + AluY SINE Alu 1 297 -14 335 221 5 69 chr12 25331160 25331221 -118455234 + L1ME1 LINE L1 6079 6142 -22 1951 184 72 8 chr12 25331273 25331675 -118454780 + MSTA LTR MaLR 1 428 0 356 349 60 57 chr12 25331765 25332347 -118454108 + L2 LINE L2 1153 1736 -1578 234 324 77 33 chr12 25332567 25332749 -118453706 - L2 LINE L2 -1121 2193 2004 238 354 42 59 chr12 25334470 25334707 -118451748 + L3 LINE CR1 1301 1533 -44 1290 227 108 21 chr12 25334717 25335090 -118451365 - Charlie4a DNA MER1_type -1473 488 72 1848 157 13 0 chr12 25335090 25335390 -118451065 + 7SLRNA srpRNA srpRNA 1 304 -16 1290 227 108 21 chr12 25335390 25335443 -118451012 - Charlie4a DNA MER1_type -1889 72 25 698 273 22 6 chr12 25335571 25335754 -118450701 + MIR SINE MIR 12 197 -65 381 301 35 52 chr12 25336123 25336296 -118450159 - L2 LINE L2 -1021 2293 2124 201 213 0 0 chr12 25336456 25336503 -118449952 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 247 321 143 0 chr12 25337014 25337098 -118449357 + MIR SINE MIR 31 126 -136 1733 304 110 35 chr12 25337148 25338357 -118448098 + L2 LINE L2 1901 3227 -86 2075 130 39 0 chr12 25338357 25338641 -118447814 - AluSg SINE Alu -15 295 1 1733 304 110 35 chr12 25338641 25338736 -118447719 + L2 LINE L2 3227 3313 0 269 247 49 12 chr12 25338779 25338860 -118447595 + MIR SINE MIR 166 249 -13 21 57 0 0 chr12 25338931 25338966 -118447489 + AT_rich Low_complexity Low_complexity 1 35 0 278 226 0 0 chr12 25339874 25339927 -118446528 + L2 LINE L2 3215 3267 -5 213 311 0 0 chr12 25339952 25340013 -118446442 + MIR SINE MIR 128 188 -74 2245 123 7 0 chr12 25340336 25340645 -118445810 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr12 25340650 25340672 -118445783 + AT_rich Low_complexity Low_complexity 1 22 0 183 326 47 23 chr12 25341016 25341102 -118445353 - L2 LINE L2 -48 3224 3137 632 305 81 42 chr12 25342099 25342316 -118444139 + LTR33 LTR ERVL 4 211 -310 2376 91 7 0 chr12 25342316 25342624 -118443831 - AluSq SINE Alu -3 310 1 632 305 81 42 chr12 25342624 25342885 -118443570 + LTR33 LTR ERVL 211 501 -20 240 35 0 0 chr12 25342915 25342944 -118443511 + (GGAA)n Simple_repeat Simple_repeat 2 30 0 401 91 30 0 chr12 25342952 25343018 -118443437 + GA-rich Low_complexity Low_complexity 4 71 0 877 201 108 12 chr12 25343148 25343397 -118443058 - L1ME2 LINE L1 -11 6153 5881 287 320 0 0 chr12 25345988 25346066 -118440389 - MIR SINE MIR -87 121 44 244 281 0 0 chr12 25346347 25346404 -118440051 + (TG)n Simple_repeat Simple_repeat 2 58 0 2005 118 46 26 chr12 25346420 25346726 -118439729 + AluJb SINE Alu 1 312 0 236 228 0 18 chr12 25347414 25347471 -118438984 + L2 LINE L2 3256 3311 -2 249 163 0 0 chr12 25348229 25348272 -118438183 - L2 LINE L2 -4 3309 3267 2162 190 26 42 chr12 25348848 25349347 -118437108 + MLT1D LTR MaLR 5 495 -10 286 382 0 0 chr12 25349406 25349508 -118436947 - L2 LINE L2 -1 3312 3211 2514 261 98 31 chr12 25350042 25350192 -118436263 + MER69B DNA AcHobo 18 157 -2369 1500 186 24 90 chr12 25350192 25350526 -118435929 + AluJb SINE Alu 1 312 0 2514 261 98 31 chr12 25350526 25351008 -118435447 + MER69B DNA AcHobo 157 605 -1921 2186 111 71 31 chr12 25351008 25351358 -118435097 + THE1B LTR MaLR 1 364 0 2514 261 98 31 chr12 25351358 25351832 -118434623 + MER69B DNA AcHobo 605 1199 -27 180 324 15 29 chr12 25352062 25352130 -118434325 + MIR SINE MIR 71 137 -125 1038 232 29 20 chr12 25352135 25352381 -118434074 + MIR SINE MIR 15 262 0 2468 110 30 3 chr12 25353202 25353565 -118432890 - THE1C LTR MaLR 0 375 3 284 228 41 81 chr12 25353596 25353719 -118432736 - MIR SINE MIR -65 197 80 1871 169 23 6 chr12 25355428 25355782 -118430673 + MLT1A1 LTR MaLR 1 360 -5 671 303 65 57 chr12 25355807 25356174 -118430281 + L2 LINE L2 2931 3300 -13 180 111 0 0 chr12 25356174 25356201 -118430254 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 242 333 11 35 chr12 25356241 25356328 -118430127 + L2 LINE L2 3186 3270 -2 199 271 29 43 chr12 25356553 25356623 -118429832 - L2 LINE L2 -11 3302 3234 21 36 0 0 chr12 25357099 25357127 -118429328 + AT_rich Low_complexity Low_complexity 1 28 0 2314 78 3 0 chr12 25357524 25357820 -118428635 + AluY SINE Alu 1 297 -14 191 195 24 0 chr12 25357867 25357908 -118428547 - MIR3 SINE MIR 0 208 167 201 260 40 0 chr12 25358043 25358093 -118428362 - MIR3 SINE MIR -6 202 151 751 150 0 64 chr12 25358185 25358325 -118428130 + FLAM_C SINE Alu 2 132 -1 230 246 140 9 chr12 25358339 25358453 -118428002 + MER103 DNA DNA 38 166 0 261 324 71 37 chr12 25358499 25358662 -118427793 - MIR3 SINE MIR -33 175 2 338 298 47 74 chr12 25360482 25360697 -118425758 - MIR SINE MIR -11 251 43 2196 226 27 16 chr12 25361395 25361908 -118424547 + LTR40a LTR ERVL 1 519 0 1704 249 49 90 chr12 25361916 25362948 -118423507 + HERVL40 LTR ERVL 8 1088 -4442 1149 241 79 6 chr12 25362956 25363271 -118423184 + LTR40a LTR ERVL 182 519 0 182 228 18 35 chr12 25364390 25364447 -118422008 + L2 LINE L2 3258 3313 0 333 0 0 0 chr12 25364994 25365031 -118421424 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 396 0 0 0 chr12 25365030 25365074 -118421381 + (GA)n Simple_repeat Simple_repeat 1 44 0 294 225 113 0 chr12 25366201 25366272 -118420183 - MIR SINE MIR -6 256 178 225 159 0 0 chr12 25366282 25366326 -118420129 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 285 250 70 30 chr12 25366542 25366642 -118419813 + MIR3 SINE MIR 103 206 -2 262 267 147 0 chr12 25367066 25367141 -118419314 - MIR3 SINE MIR -11 197 112 2175 95 26 7 chr12 25368615 25368921 -118417534 + AluSx SINE Alu 1 312 0 189 0 0 0 chr12 25369294 25369315 -118417140 + (A)n Simple_repeat Simple_repeat 1 21 0 405 292 65 7 chr12 25369318 25369472 -118416983 + MIR SINE MIR 55 217 -45 23 0 0 0 chr12 25370136 25370159 -118416296 + AT_rich Low_complexity Low_complexity 1 23 0 411 334 50 53 chr12 25371031 25371184 -118415271 + L2 LINE L2 2987 3139 -174 1877 164 0 0 chr12 25371184 25371476 -118414979 + AluJb SINE Alu 3 294 -18 411 334 50 53 chr12 25371476 25371642 -118414813 + L2 LINE L2 3139 3305 -8 203 305 39 97 chr12 25371758 25371825 -118414630 - MIR SINE MIR 0 262 193 2032 128 3 0 chr12 25371825 25372114 -118414341 + AluSx SINE Alu 22 311 -1 203 305 39 97 chr12 25372114 25372200 -118414255 - MIR SINE MIR -69 193 118 221 242 32 32 chr12 25372556 25372618 -118413837 + L3 LINE CR1 1515 1576 -1 950 195 53 0 chr12 25373617 25373843 -118412612 + L1MA4 LINE L1 6062 6299 -1 754 83 0 0 chr12 25374187 25374308 -118412147 + AluSp/q SINE Alu 188 308 0 21 36 0 0 chr12 25374315 25374343 -118412112 + AT_rich Low_complexity Low_complexity 1 28 0 1519 252 80 10 chr12 25375061 25375549 -118410906 + L1ME3A LINE L1 5649 6170 0 23 33 0 0 chr12 25376190 25376220 -118410235 + AT_rich Low_complexity Low_complexity 1 30 0 337 294 120 43 chr12 25376288 25376472 -118409983 + MIR SINE MIR 65 262 0 192 158 0 0 chr12 25377364 25377402 -118409053 + T-rich Low_complexity Low_complexity 1 38 0 201 314 29 0 chr12 25377711 25377781 -118408674 + MIR SINE MIR 191 262 0 513 170 19 0 chr12 25378394 25378500 -118407955 + L1MB8 LINE L1 6065 6172 -6 1635 310 140 52 chr12 25379806 25380579 -118405876 + L2 LINE L2 1724 2427 -886 1497 181 0 69 chr12 25380579 25380911 -118405544 - AluJb SINE Alu 0 311 1 1635 310 140 52 chr12 25380911 25381608 -118404847 + L2 LINE L2 2427 3307 -6 2033 177 7 68 chr12 25382333 25382691 -118403764 + MLT2D LTR ERVL 1 379 -35 405 0 0 0 chr12 25382691 25382736 -118403719 + (TC)n Simple_repeat Simple_repeat 2 46 0 * 546 16 0 0 chr12 25382735 25382798 -118403657 + (TA)n Simple_repeat Simple_repeat 1 63 0 2033 177 7 68 chr12 25382736 25382880 -118403575 + MLT2D LTR ERVL 379 414 0 277 350 73 17 chr12 25386563 25386740 -118399715 + MER5A DNA MER1_type 1 187 -2 2039 158 0 0 chr12 25387671 25387981 -118398474 + AluSx SINE Alu 1 310 -2 185 319 222 0 chr12 25387985 25388120 -118398335 + L2 LINE L2 2887 3051 -221 202 273 15 45 chr12 25388228 25388294 -118398161 + L2 LINE L2 3199 3262 -10 183 129 0 0 chr12 25388850 25388881 -118397574 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 189 0 0 0 chr12 25390016 25390037 -118396418 + (TAA)n Simple_repeat Simple_repeat 2 22 0 188 179 0 0 chr12 25390377 25390405 -118396050 + MIR SINE MIR 203 230 -32 181 302 0 0 chr12 25390380 25390423 -118396032 + L2 LINE L2 3251 3293 -20 * 501 301 115 5 chr12 25391667 25391876 -118394579 - MIR SINE MIR -27 235 4 2282 107 0 0 chr12 25392381 25392679 -118393776 + AluSx SINE Alu 1 298 -14 410 251 157 27 chr12 25392829 25393052 -118393403 + LTR16A LTR ERVL 106 357 -93 397 250 64 21 chr12 25393628 25393768 -118392687 - L2 LINE L2 -9 3304 3159 500 90 26 0 chr12 25394643 25394721 -118391734 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 1328 140 40 35 chr12 25394721 25394949 -118391506 - AluJo SINE Alu -50 262 34 298 158 79 30 chr12 25395099 25395200 -118391255 + L1MC5 LINE L1 7640 7745 -216 353 271 127 44 chr12 25395229 25395355 -118391100 + MIR SINE MIR 57 204 -58 3146 196 28 6 chr12 25395355 25395993 -118390462 - MER82 DNA MER2_type -1 652 1 353 271 127 44 chr12 25395993 25396047 -118390408 + MIR SINE MIR 204 252 -10 336 277 149 7 chr12 25397051 25397192 -118389263 + LTR16C LTR ERVL 312 472 -19 1399 110 14 10 chr12 25397270 25397479 -118388976 + AluSg/x SINE Alu 98 307 -5 2036 131 16 41 chr12 25397670 25398031 -118388424 - AluJb SINE Alu 0 353 1 1186 164 41 0 chr12 25398645 25398889 -118387566 - L1MA8 LINE L1 -10 6281 6028 405 270 158 26 chr12 25400148 25400300 -118386155 - L2 LINE L2 0 3272 3101 302 144 11 44 chr12 25400797 25400887 -118385568 + GA-rich Low_complexity Low_complexity 2 88 0 722 254 116 65 chr12 25401816 25402186 -118384269 - L2 LINE L2 -2 3311 2923 206 275 11 88 chr12 25402234 25402325 -118384130 - MIR SINE MIR -50 212 129 660 257 18 37 chr12 25402556 25402774 -118383681 + L2 LINE L2 1482 1695 -1619 1067 148 0 0 chr12 25402780 25402929 -118383526 + AluSq/x SINE Alu 1 149 -164 310 104 0 0 chr12 25402929 25402977 -118383478 + Alu SINE Alu 247 294 -8 277 356 15 15 chr12 25402986 25403118 -118383337 + L2 LINE L2 1699 1830 -1484 1347 226 141 3 chr12 25403136 25403526 -118382929 + L2 LINE L2 2456 2899 -415 326 200 14 14 chr12 25403528 25403598 -118382857 + L2 LINE L2 3183 3252 -61 1437 188 30 30 chr12 25403600 25403685 -118382770 - MER2 DNA MER2_type 0 345 261 921 145 0 36 chr12 25403685 25403851 -118382604 + L1PA16 LINE L1 6006 6165 -1 1437 188 30 30 chr12 25403851 25404101 -118382354 - MER2 DNA MER2_type -83 262 10 2254 110 30 36 chr12 25404102 25404467 -118381988 - THE1B LTR MaLR -1 363 1 315 193 18 0 chr12 25404480 25404537 -118381918 + L2 LINE L2 3252 3309 -4 180 152 0 0 chr12 25405310 25405343 -118381112 + T-rich Low_complexity Low_complexity 1 33 0 199 406 62 0 chr12 25406024 25406120 -118380335 - L2 LINE L2 -210 3062 2961 205 161 0 0 chr12 25406662 25406693 -118379762 + polypurine Low_complexity Low_complexity 2 32 0 1432 184 24 51 chr12 25408570 25408863 -118377592 + AluJo SINE Alu 2 286 -26 1822 175 57 95 chr12 25409603 25410128 -118376327 - MLT1D LTR MaLR 0 505 1 215 280 0 0 chr12 25410464 25410514 -118375941 + (CA)n Simple_repeat Simple_repeat 1 50 0 433 286 71 76 chr12 25411344 25411534 -118374921 + L1ME LINE L1 5494 5684 -437 2421 91 0 9 chr12 25411534 25411876 -118374579 + L1PA8A LINE L1 5792 6130 -1 433 286 71 76 chr12 25411876 25411923 -118374532 + L1ME LINE L1 5684 5730 -391 858 291 99 24 chr12 25411930 25412304 -118374151 + MLT1J2 LTR MaLR 4 405 -45 225 307 63 24 chr12 25412704 25412831 -118373624 - L3 LINE CR1 -1 1576 1445 289 319 111 7 chr12 25412944 25413088 -118373367 - MIR SINE MIR -6 256 98 434 377 31 9 chr12 25413270 25413493 -118372962 + MIR SINE MIR 6 233 -29 1137 147 0 37 chr12 25414089 25414280 -118372175 + AluJb SINE Alu 124 307 -5 288 371 0 8 chr12 25414790 25414914 -118371541 - MER5B DNA MER1_type -49 129 7 25 0 0 0 chr12 25415144 25415169 -118371286 + AT_rich Low_complexity Low_complexity 1 25 0 537 286 56 0 chr12 25415241 25415402 -118371053 + MIR SINE MIR 20 189 -73 415 286 17 17 chr12 25415462 25415581 -118370874 + MIR SINE MIR 36 154 -108 386 306 134 25 chr12 25416004 25416399 -118370056 + LTR16A LTR ERVL 3 440 -10 240 250 0 29 chr12 25416828 25416896 -118369559 - LTR33A LTR ERVL -6 517 452 914 185 0 22 chr12 25417787 25417965 -118368490 - FAM SINE Alu -1 174 1 2425 73 0 7 chr12 25418521 25418824 -118367631 - AluSq SINE Alu -12 301 1 35 54 0 0 chr12 25419257 25419313 -118367142 + AT_rich Low_complexity Low_complexity 1 56 0 516 32 0 0 chr12 25421657 25421719 -118364736 + (TG)n Simple_repeat Simple_repeat 2 63 0 338 91 45 0 chr12 25423803 25423869 -118362586 - L1MD2 LINE L1 -3 6356 6288 1350 166 0 22 chr12 25423869 25424092 -118362363 + AluJo SINE Alu 87 304 -8 444 176 132 38 chr12 25424092 25424251 -118362204 - L1MD2 LINE L1 -61 6298 6125 371 303 181 0 chr12 25424294 25424449 -118362006 - MIR SINE MIR 0 262 80 1396 164 6 75 chr12 25424619 25424733 -118361722 + L1MC2 LINE L1 6021 6141 -203 1724 53 5 0 chr12 25424733 25424940 -118361515 + AluY SINE Alu 86 293 -18 1396 164 6 75 chr12 25424940 25425173 -118361282 + L1MC2 LINE L1 6141 6344 0 854 257 67 45 chr12 25426631 25427005 -118359450 - MLT1I LTR MaLR -2 407 26 31 26 0 0 chr12 25427413 25427451 -118359004 + AT_rich Low_complexity Low_complexity 1 38 0 640 168 40 27 chr12 25427546 25427695 -118358760 + L1MD1 LINE L1 6079 6229 -13 819 148 8 0 chr12 25427962 25428084 -118358371 + AluJb SINE Alu 9 131 -181 189 171 0 0 chr12 25428116 25428151 -118358304 + T-rich Low_complexity Low_complexity 1 35 0 771 318 120 21 chr12 25428158 25428592 -118357863 - L2 LINE L2 -17 3296 2820 242 208 21 0 chr12 25429448 25429496 -118356959 - L3b LINE CR1 -13 1570 1522 1178 171 9 36 chr12 25429707 25429929 -118356526 + AluJb SINE Alu 87 302 -10 2075 112 28 3 chr12 25429966 25430253 -118356202 - AluSc SINE Alu -15 294 1 27 0 0 0 chr12 25430639 25430666 -118355789 + AT_rich Low_complexity Low_complexity 1 27 0 1714 164 68 4 chr12 25430666 25430947 -118355508 - AluJo SINE Alu 0 312 14 211 288 55 14 chr12 25431034 25431107 -118355348 + L3b LINE CR1 1438 1513 -70 975 217 18 111 chr12 25431245 25431866 -118354589 + MER52A LTR ERV1 283 1448 -140 356 200 9 73 chr12 25431906 25432016 -118354439 + MER52A LTR ERV1 1653 1755 0 2397 108 0 0 chr12 25432573 25432878 -118353577 - AluSg SINE Alu -5 305 1 862 119 13 46 chr12 25432986 25433058 -118353397 + FAM SINE Alu 23 89 -232 2463 135 3 3 chr12 25433058 25433422 -118353033 - THE1B LTR MaLR 0 364 1 862 119 13 46 chr12 25433422 25433500 -118352955 + FAM SINE Alu 89 168 -17 435 208 28 47 chr12 25433533 25433639 -118352816 - MER5A DNA MER1_type -77 112 9 2041 157 48 43 chr12 25435779 25436200 -118350255 - MLT2C2 LTR ERVL -40 424 2 2402 87 3 0 chr12 25436738 25437038 -118349417 - AluSp SINE Alu -12 301 1 216 0 0 0 chr12 25437062 25437086 -118349369 + (T)n Simple_repeat Simple_repeat 1 24 0 5935 98 13 6 chr12 25437309 25438219 -118348236 - L1MA1 LINE L1 0 6302 5386 203 179 0 0 chr12 25443101 25443140 -118343315 + T-rich Low_complexity Low_complexity 1 39 0 1655 127 8 6 chr12 25444992 25445313 -118341142 - MER1B DNA MER1_type 0 339 59 238 217 170 47 chr12 25445568 25445674 -118340781 - L2 LINE L2 -4 3268 3150 765 236 55 0 chr12 25446734 25446899 -118339556 + MER5A DNA MER1_type 2 175 -14 686 295 26 34 chr12 25447231 25447465 -118338990 - MIR SINE MIR -19 243 12 223 250 0 0 chr12 25447855 25447899 -118338556 - MIR3 SINE MIR -49 159 116 279 306 31 31 chr12 25449941 25450039 -118336416 - L2 LINE L2 0 3272 3175 1729 157 32 32 chr12 25451337 25451521 -118334934 - AluJb SINE Alu 0 312 126 252 0 0 0 chr12 25451521 25451549 -118334906 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1729 157 32 32 chr12 25451549 25451676 -118334779 - AluJb SINE Alu -185 127 1 2016 145 119 13 chr12 25451808 25452195 -118334260 + MSTA LTR MaLR 1 428 0 483 118 0 0 chr12 25452534 25452610 -118333845 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 1419 205 3 24 chr12 25452610 25452898 -118333557 - AluJo SINE Alu -26 286 5 3797 139 43 26 chr12 25453096 25453414 -118333041 - L1MA4 LINE L1 -3 6180 5869 225 0 0 0 chr12 25453414 25453439 -118333016 + (TG)n Simple_repeat Simple_repeat 2 26 0 189 0 0 0 chr12 25453438 25453459 -118332996 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 3797 139 43 26 chr12 25453439 25453967 -118332488 - L1MA4 LINE L1 -314 5869 5285 * 5934 177 6 7 chr12 25453953 25454232 -118332223 - L1 LINE L1 -786 5360 5082 1627 217 0 0 chr12 25454232 25454509 -118331946 + AluJb SINE Alu 1 277 -35 5934 177 6 7 chr12 25454509 25455457 -118330998 - L1 LINE L1 -1064 5082 4135 2061 154 0 3 chr12 25455811 25456117 -118330338 + AluSx SINE Alu 1 305 -7 813 161 0 0 chr12 25456230 25456354 -118330101 - FLAM_C SINE Alu -9 124 1 447 224 79 35 chr12 25456805 25457026 -118329429 + L1ME4a LINE L1 5724 5934 -187 2104 116 0 3 chr12 25457026 25457368 -118329087 + AluSx SINE Alu 1 341 0 447 224 79 35 chr12 25457368 25457404 -118329051 + L1ME4a LINE L1 5934 5967 -154 2235 128 0 0 chr12 25457404 25457709 -118328746 + AluSq SINE Alu 1 305 -8 447 224 79 35 chr12 25457709 25457739 -118328716 + L1ME4a LINE L1 5967 6026 -95 354 45 0 0 chr12 25458075 25458119 -118328336 + (GAAAA)n Simple_repeat Simple_repeat 3 46 0 2149 132 86 37 chr12 25459305 25459402 -118327053 + Tigger2a DNA MER2_type 1 92 -2616 198 0 0 0 chr12 25459402 25459424 -118327031 + (TCC)n Simple_repeat Simple_repeat 2 23 0 2149 132 86 37 chr12 25459424 25459669 -118326786 + Tigger2a DNA MER2_type 92 369 -2339 1947 168 0 0 chr12 25459669 25459973 -118326482 + AluJb SINE Alu 1 304 -8 2149 132 86 37 chr12 25459973 25460038 -118326417 + Tigger2a DNA MER2_type 369 429 -5 1096 153 0 0 chr12 25460730 25460900 -118325555 + FAM SINE Alu 5 174 -1 186 226 151 19 chr12 25461310 25461363 -118325092 - MIR SINE MIR -119 143 84 2282 118 0 0 chr12 25461539 25461845 -118324610 + AluSx SINE Alu 1 306 -6 24 0 0 0 chr12 25461886 25461910 -118324545 + AT_rich Low_complexity Low_complexity 1 24 0 570 245 20 41 chr12 25461960 25462107 -118324348 - MIR SINE MIR -99 163 20 1635 156 44 60 chr12 25462113 25462428 -118324027 - AluJb SINE Alu -2 310 1 398 19 0 19 chr12 25463854 25463906 -118322549 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1680 176 3 11 chr12 25463909 25464193 -118322262 - AluJo SINE Alu -30 282 1 1040 99 6 22 chr12 25465096 25465277 -118321178 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 636 208 12 6 chr12 25465282 25465450 -118321005 + GA-rich Low_complexity Low_complexity 4 172 0 2194 93 45 0 chr12 25465739 25466029 -118320426 - AluSx SINE Alu -9 303 1 206 333 77 0 chr12 25466495 25466573 -118319882 + L2 LINE L2 3184 3267 -5 590 305 108 36 chr12 25467294 25467628 -118318827 - L2 LINE L2 -3 3310 2953 191 312 91 0 chr12 25467702 25467779 -118318676 + L2 LINE L2 3139 3222 -50 2091 104 32 29 chr12 25469923 25470231 -118316224 + AluSx SINE Alu 1 309 -3 508 199 84 15 chr12 25470826 25470957 -118315498 - MIR SINE MIR -26 236 97 198 0 0 0 chr12 25471502 25471524 -118314931 + (CATTA)n Simple_repeat Simple_repeat 4 25 0 2076 136 3 0 chr12 25471624 25471919 -118314536 + AluSx SINE Alu 1 296 -16 2272 77 0 11 chr12 25472448 25472760 -118313695 + AluSp SINE Alu 1 309 0 226 174 43 0 chr12 25472764 25472810 -118313645 + MLT1K LTR MaLR 539 586 -2 2551 43 10 0 chr12 25472919 25473220 -118313235 + AluY SINE Alu 1 304 -7 1958 139 0 13 chr12 25473233 25473535 -118312920 + AluSx SINE Alu 1 298 -14 29 28 0 0 chr12 25473641 25473677 -118312778 + AT_rich Low_complexity Low_complexity 1 36 0 254 261 63 85 chr12 25473809 25473997 -118312458 + MIR3 SINE MIR 4 191 -71 676 186 0 0 chr12 25474081 25474199 -118312256 + FLAM_C SINE Alu 5 122 -11 319 249 205 44 chr12 25474942 25474955 -118311500 - MIR SINE MIR -19 243 233 770 162 270 5 chr12 25474955 25475140 -118311315 + MER46A DNA MER2_type 1 234 -2 319 249 205 44 chr12 25475140 25475331 -118311124 - MIR SINE MIR -29 233 6 663 281 114 5 chr12 25475338 25475494 -118310961 - MIR SINE MIR -12 250 64 1297 175 25 22 chr12 25475494 25475768 -118310687 - L1MC1 LINE L1 0 6333 6059 663 281 114 5 chr12 25475768 25475821 -118310634 - MIR SINE MIR -198 64 18 246 136 0 0 chr12 25475900 25475944 -118310511 + (GA)n Simple_repeat Simple_repeat 2 45 0 228 227 280 13 chr12 25476020 25476095 -118310360 + MER5B DNA MER1_type 1 95 -83 575 180 14 29 chr12 25476506 25476645 -118309810 - L1MC2 LINE L1 -12 6332 6196 264 51 51 0 chr12 25476646 25476685 -118309770 - L1MC2 LINE L1 -194 6150 6110 2235 167 10 5 chr12 25478808 25479209 -118307246 + MER57A LTR ERV1 1 403 0 1778 136 192 3 chr12 25480235 25480595 -118305860 + MSTA LTR MaLR 1 428 0 2486 172 17 8 chr12 25481432 25481903 -118304552 + L1PA16 LINE L1 5675 6149 -17 22 0 0 0 chr12 25481948 25481970 -118304485 + AT_rich Low_complexity Low_complexity 1 22 0 5167 134 36 19 chr12 25532878 25533729 -118252726 + MER41B-int LTR ERV1 5081 5946 0 3977 160 21 3 chr12 25533729 25534353 -118252102 + MER41B LTR ERV1 1 635 0 1742 197 53 22 chr12 25534358 25534812 -118251643 + MER72 LTR ERV1 157 722 0 272 284 142 16 chr12 25535239 25535366 -118251089 + MIR SINE MIR 102 244 -18 1723 195 0 3 chr12 25535696 25535994 -118250461 + AluJo SINE Alu 1 297 -15 684 227 134 6 chr12 25536042 25536214 -118250241 + MER58A DNA MER1_type 30 223 -1 1420 289 120 16 chr12 25536641 25537450 -118249005 + L2 LINE L2 1629 2521 -793 225 149 0 43 chr12 25537654 25537701 -118248754 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 22 35 0 0 chr12 25537701 25537730 -118248725 + AT_rich Low_complexity Low_complexity 1 29 0 4728 110 112 111 chr12 25537940 25539351 -118247104 + pTR5 LTR ERV1 741 2437 -1 1821 256 118 30 chr12 25539396 25539778 -118246677 + HsTC2c DNA Tc2 29 376 -1522 2246 104 0 0 chr12 25539778 25540077 -118246378 + AluSx SINE Alu 11 309 -3 1821 256 118 30 chr12 25540077 25540338 -118246117 + HsTC2c DNA Tc2 376 729 0 230 272 7 73 chr12 25540374 25540510 -118245945 + L1MC4a LINE L1 5809 5935 -1873 * 1172 238 83 60 chr12 25540508 25541273 -118245182 + L1ME LINE L1 4805 5586 -584 2250 132 52 3 chr12 25541273 25541600 -118244855 + MER61A LTR ERV1 1 343 0 1172 238 83 60 chr12 25541600 25541699 -118244756 + L1ME LINE L1 5586 5681 -489 348 83 0 0 chr12 25542027 25542075 -118244380 + (TG)n Simple_repeat Simple_repeat 2 49 0 187 149 21 21 chr12 25542300 25542347 -118244108 + (TATG)n Simple_repeat Simple_repeat 4 50 0 340 299 65 19 chr12 25542583 25542690 -118243765 + L2 LINE L2 3134 3245 -27 342 246 56 32 chr12 25542720 25542795 -118243660 + MIR SINE MIR 100 181 -81 2221 112 17 0 chr12 25542795 25543090 -118243365 + AluSx SINE Alu 1 300 -12 342 246 56 32 chr12 25543090 25543140 -118243315 + MIR SINE MIR 181 228 -34 1111 163 30 10 chr12 25545651 25545853 -118240602 - MER46A DNA MER2_type -6 230 25 2138 110 3 0 chr12 25546089 25546395 -118240060 + AluSx SINE Alu 1 307 0 241 313 62 0 chr12 25546741 25546821 -118239634 - MER5A DNA MER1_type -30 159 75 235 231 127 29 chr12 25547680 25547786 -118238669 + MER5A DNA MER1_type 65 183 -6 1926 157 25 25 chr12 25547914 25548271 -118238184 - MER47A DNA MER2_type -1 365 9 183 80 0 0 chr12 25548318 25548343 -118238112 + (A)n Simple_repeat Simple_repeat 1 25 0 1097 208 24 20 chr12 25548343 25548637 -118237818 + L1M4 LINE L1 3684 3978 -2168 1836 106 68 0 chr12 25548761 25549026 -118237429 + L1PA11 LINE L1 5891 6173 -1 307 277 0 0 chr12 25549850 25549915 -118236540 + MER58B DNA MER1_type 191 255 -86 1727 175 32 0 chr12 25549929 25550214 -118236241 + AluJb SINE Alu 1 294 -18 349 279 59 0 chr12 25550235 25550371 -118236084 - L1M4 LINE L1 -1053 5093 4950 330 183 28 14 chr12 25550376 25550447 -118236008 + MER58B DNA MER1_type 269 340 -1 594 128 34 151 chr12 25550794 25550973 -118235482 + L1MA4 LINE L1 6140 6297 -3 723 273 102 20 chr12 25551022 25551414 -118235041 + L1M4 LINE L1 4909 5332 -814 359 323 40 8 chr12 25551733 25551857 -118234598 + MIR3 SINE MIR 14 141 -67 1898 147 0 27 chr12 25552224 25552524 -118233931 + AluSx SINE Alu 1 292 -20 1777 154 26 13 chr12 25552888 25553193 -118233262 - AluJb SINE Alu -3 309 1 422 231 61 21 chr12 25554079 25554408 -118232047 + L1M4 LINE L1 2510 2951 -3195 21 36 0 0 chr12 25554512 25554540 -118231915 + AT_rich Low_complexity Low_complexity 1 28 0 1900 128 6 31 chr12 25554638 25554958 -118231497 - AluJb SINE Alu 0 312 1 1641 226 112 70 chr12 25554958 25555214 -118231241 + L1MC5 LINE L1 7001 7245 -716 547 138 0 12 chr12 25555214 25555294 -118231161 + MADE1 DNA Mariner 1 79 -1 1641 226 112 70 chr12 25555294 25555311 -118231144 + L1MC5 LINE L1 7245 7260 -701 201 39 0 0 chr12 25555311 25555337 -118231118 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 1641 226 112 70 chr12 25555337 25555456 -118230999 + L1MC5 LINE L1 7260 7373 -588 2256 109 0 0 chr12 25555456 25555741 -118230714 + AluSq SINE Alu 1 285 -28 1641 226 112 70 chr12 25555741 25556143 -118230312 + L1MC5 LINE L1 7373 7830 -131 635 298 71 18 chr12 25556487 25556528 -118229927 - MIR SINE MIR -21 241 204 1468 184 6 95 chr12 25556528 25556696 -118229759 - AluSx SINE Alu -3 299 172 2420 92 0 0 chr12 25556696 25557002 -118229453 - AluSg SINE Alu -4 306 1 1468 184 6 95 chr12 25557002 25557159 -118229296 - AluSx SINE Alu -130 172 3 635 298 71 18 chr12 25557159 25557342 -118229113 - MIR SINE MIR -58 204 5 477 164 242 55 chr12 25557397 25557525 -118228930 + MSTA LTR MaLR 1 152 -223 633 141 41 16 chr12 25557527 25557648 -118228807 - LTR9 LTR ERV1 -2 610 487 574 322 123 45 chr12 25557783 25558271 -118228184 - L2 LINE L2 -17 3255 2736 818 166 25 55 chr12 25558286 25558475 -118227980 - AluJb SINE Alu 0 312 140 268 335 166 24 chr12 25558715 25559289 -118227166 - L2 LINE L2 -2502 812 158 205 290 16 0 chr12 25559521 25559583 -118226872 + L2 LINE L2 3001 3063 -209 2099 121 4 0 chr12 25559659 25559968 -118226487 - AluSx SINE Alu 0 310 1 2167 120 13 3 chr12 25560349 25560657 -118225798 + AluSx SINE Alu 1 311 -1 326 176 40 14 chr12 25560919 25560993 -118225462 - L1MC/D LINE L1 -2075 5733 5658 391 309 63 17 chr12 25562891 25563066 -118223389 - L2 LINE L2 -676 2638 2456 2086 100 0 11 chr12 25563072 25563353 -118223102 + AluSx SINE Alu 21 298 -14 1946 160 3 0 chr12 25564005 25564312 -118222143 + AluJb SINE Alu 1 308 -4 2526 57 0 0 chr12 25564496 25564797 -118221658 + AluY SINE Alu 1 301 -10 1711 158 42 3 chr12 25566354 25566638 -118219817 + AluSx SINE Alu 11 305 -7 2157 147 82 31 chr12 25567110 25567526 -118218929 - LTR23 LTR ERV1 0 437 1 405 0 0 0 chr12 25567961 25568006 -118218449 + (CA)n Simple_repeat Simple_repeat 1 45 0 763 162 22 22 chr12 25570787 25570923 -118215532 - FLAM_C SINE Alu -7 136 1 221 349 15 0 chr12 25570937 25571003 -118215452 + L2 LINE L2 3119 3185 -87 324 317 30 0 chr12 25571541 25571642 -118214813 - L2 LINE L2 -32 3240 3137 2445 159 11 16 chr12 25571666 25572106 -118214349 + L1MB7 LINE L1 5743 6180 -4 2167 103 26 10 chr12 25572107 25572409 -118214046 + AluSx SINE Alu 1 307 -5 1683 206 12 12 chr12 25572558 25572897 -118213558 - LTR27 LTR ERV1 0 636 298 505 164 19 9 chr12 25572904 25573021 -118213434 - MER61B LTR ERV1 -319 106 33 28 0 0 0 chr12 25573081 25573109 -118213346 + AT_rich Low_complexity Low_complexity 1 28 0 1599 157 85 24 chr12 25573164 25573458 -118212997 + AluJo SINE Alu 1 312 0 201 121 0 0 chr12 25574174 25574207 -118212248 + (CA)n Simple_repeat Simple_repeat 1 33 0 2524 63 3 0 chr12 25574343 25574646 -118211809 + AluY SINE Alu 1 304 -7 1264 150 4 64 chr12 25575605 25575791 -118210664 + MER20 DNA MER1_type 1 172 -47 2217 110 0 10 chr12 25575791 25576091 -118210364 + AluSx SINE Alu 1 297 -15 1264 150 4 64 chr12 25576091 25576137 -118210318 + MER20 DNA MER1_type 172 219 0 2283 115 19 43 chr12 25576165 25576538 -118209917 + THE1B LTR MaLR 1 364 0 1963 112 3 67 chr12 25576753 25577083 -118209372 - AluSq SINE Alu -4 309 1 1829 170 23 0 chr12 25577181 25577481 -118208974 + AluJb SINE Alu 3 309 -3 235 282 64 13 chr12 25577662 25577740 -118208715 + MLT1L LTR MaLR 215 296 -319 216 257 0 0 chr12 25577764 25577834 -118208621 + CT-rich Low_complexity Low_complexity 2 71 0 2209 74 20 34 chr12 25577908 25578206 -118208249 - AluSp SINE Alu -16 297 4 1813 168 3 0 chr12 25578210 25578520 -118207935 - AluJo SINE Alu 0 311 1 1012 128 34 34 chr12 25578520 25578699 -118207756 - L1MB1 LINE L1 -37 6131 5953 665 282 75 19 chr12 25578712 25578978 -118207477 + MLT1L LTR MaLR 322 602 -13 237 108 0 0 chr12 25579145 25579182 -118207273 + (TG)n Simple_repeat Simple_repeat 2 38 0 2127 122 30 3 chr12 25579224 25579528 -118206927 - AluSx SINE Alu 0 312 1 2367 106 0 0 chr12 25579752 25580055 -118206400 - AluSx SINE Alu -9 303 1 526 224 82 0 chr12 25580100 25580247 -118206208 + MIR SINE MIR 104 262 0 203 293 0 0 chr12 25580578 25580636 -118205819 + L2 LINE L2 754 811 -2503 196 303 0 15 chr12 25580637 25580703 -118205752 + MER5A DNA MER1_type 57 121 -68 16060 127 9 24 chr12 25580857 25581786 -118204669 + L1M1 LINE L1 13 954 -6611 2361 99 0 3 chr12 25581786 25582089 -118204366 + AluSg SINE Alu 1 302 -8 16060 127 9 24 chr12 25582089 25583561 -118202894 + L1M1 LINE L1 954 2378 -5187 3446 100 14 0 chr12 25583559 25584067 -118202388 + L1M1 LINE L1 2889 3403 -4162 * 3511 128 34 82 chr12 25584067 25584754 -118201701 + MER4A LTR ERV1 1 654 -10 1498 115 100 2 chr12 25584763 25585082 -118201373 + L1M1 LINE L1 3400 3753 -3812 2682 141 21 0 chr12 25585205 25585623 -118200832 + MER41B LTR ERV1 209 635 0 990 151 13 0 chr12 25585623 25585782 -118200673 + MER21A LTR ERV1 769 929 -2 364 259 65 50 chr12 25585788 25585927 -118200528 + MLT1G LTR MaLR 144 284 -306 672 157 0 0 chr12 25585968 25586076 -118200379 + MER41B LTR ERV1 202 309 -326 303 195 101 101 chr12 25586056 25586225 -118200230 + MLT1G LTR MaLR 338 506 -36 * 2349 75 0 29 chr12 25586445 25586753 -118199702 - AluY SINE Alu -12 299 1 387 0 0 0 chr12 25586756 25586799 -118199656 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 593 89 0 0 chr12 25586824 25586903 -118199552 - MER41B LTR ERV1 -556 79 1 424 178 41 0 chr12 25586903 25586969 -118199486 - MER21A LTR ERV1 -159 772 704 338 192 512 0 chr12 25587103 25587228 -118199227 + MER5A DNA MER1_type 1 189 0 1979 161 0 0 chr12 25587272 25587576 -118198879 + AluJo SINE Alu 1 304 -8 185 277 62 0 chr12 25587845 25587910 -118198545 + MIR SINE MIR 53 121 -141 229 270 95 0 chr12 25589264 25589338 -118197117 - Charlie8 DNA MER1_type -2306 111 31 2020 108 0 7 chr12 25589980 25590258 -118196197 + AluSc SINE Alu 31 306 -3 963 136 0 0 chr12 25590727 25590859 -118195596 - FLAM_C SINE Alu -11 132 1 616 216 151 11 chr12 25591005 25591190 -118195265 + MER58A DNA MER1_type 3 213 -11 2011 125 17 0 chr12 25591194 25591489 -118194966 + AluSq SINE Alu 1 300 -13 2236 124 0 0 chr12 25592252 25592558 -118193897 - AluSx SINE Alu -5 307 2 2155 117 44 0 chr12 25593226 25593524 -118192931 - AluSx SINE Alu -1 311 1 3990 112 19 52 chr12 25594048 25594745 -118191710 + L1MA4A LINE L1 5452 6125 -178 207 88 0 0 chr12 25594750 25594784 -118191671 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1510 192 19 23 chr12 25595013 25595320 -118191135 + AluJo SINE Alu 1 306 -6 2113 107 38 3 chr12 25595367 25595656 -118190799 + AluSx SINE Alu 1 299 -13 191 354 20 20 chr12 25595726 25595825 -118190630 + L2 LINE L2 3192 3290 -23 1992 137 0 0 chr12 25598911 25599211 -118187244 - AluSx SINE Alu -12 300 1 281 208 117 0 chr12 25599323 25599400 -118187055 + L2 LINE L2 2186 2271 -1043 184 367 51 10 chr12 25599645 25599743 -118186712 - L2 LINE L2 -206 3066 2965 1370 160 105 91 chr12 25599898 25600317 -118186138 - LTR37A LTR ERV1 -1 425 1 181 282 67 87 chr12 25600527 25600676 -118185779 - L2 LINE L2 -626 2688 2543 1234 189 9 5 chr12 25600700 25600917 -118185538 + AluJb SINE Alu 86 303 -9 313 321 114 11 chr12 25600922 25601193 -118185262 - L2 LINE L2 -819 2495 2197 237 169 93 110 chr12 25601205 25601323 -118185132 + MIR SINE MIR 110 225 -37 391 288 27 0 chr12 25601327 25601438 -118185017 - MER58A DNA MER1_type 0 114 1 848 135 21 13 chr12 25602104 25602268 -118184187 + LTR7 LTR ERV1 1 217 -233 913 133 0 20 chr12 25602501 25602652 -118183803 + LTR7 LTR ERV1 303 450 0 928 134 60 21 chr12 25602996 25603163 -118183292 + MER3 DNA MER1_type 1 134 -52 1850 156 3 17 chr12 25603163 25603464 -118182991 + AluJb SINE Alu 1 297 -15 928 134 60 21 chr12 25603464 25603481 -118182974 + MER3 DNA MER1_type 134 149 -37 389 268 156 11 chr12 25603558 25603737 -118182718 + MIR SINE MIR 58 262 0 734 251 132 8 chr12 25604157 25604408 -118182047 - MLT1C LTR MaLR 0 467 186 638 224 113 90 chr12 25604408 25604800 -118181655 + MLT1F LTR MaLR 138 538 -57 2138 108 0 11 chr12 25604800 25605135 -118181320 + AluSx SINE Alu 1 332 0 638 224 113 90 chr12 25605135 25605195 -118181260 + MLT1F LTR MaLR 538 595 0 1103 263 62 73 chr12 25605244 25605531 -118180924 - Charlie7 DNA MER1_type -125 2487 2198 2176 96 17 10 chr12 25605531 25605832 -118180623 + AluSx SINE Alu 1 303 -9 1103 263 62 73 chr12 25605832 25606298 -118180157 - Charlie7 DNA MER1_type -414 2198 39 1759 222 92 38 chr12 25606484 25606941 -118179514 - Charlie2b DNA MER1_type -1209 1573 1142 2375 67 0 20 chr12 25606941 25607240 -118179215 + AluY SINE Alu 1 293 -18 1759 222 92 38 chr12 25607240 25607291 -118179164 - Charlie2b DNA MER1_type -1640 1142 1095 935 150 0 0 chr12 25607291 25607424 -118179031 + FLAM_C SINE Alu 1 133 0 1759 222 92 38 chr12 25607424 25607522 -118178933 - Charlie2b DNA MER1_type -1687 1095 933 824 157 17 51 chr12 25607533 25607711 -118178744 - MER39B LTR ERV1 0 653 482 257 56 28 0 chr12 25607708 25607744 -118178711 + AluSq/x SINE Alu 99 135 -167 * 2662 112 18 15 chr12 25608350 25608751 -118177704 - MER39B LTR ERV1 -173 480 79 1504 199 7 11 chr12 25608792 25609074 -118177381 - AluSg SINE Alu -14 296 16 609 236 38 6 chr12 25609510 25609667 -118176788 + FAM SINE Alu 13 174 -11 240 163 0 0 chr12 25609813 25609856 -118176599 + (TG)n Simple_repeat Simple_repeat 1 43 0 2301 173 177 106 chr12 25610495 25611299 -118175156 + MER21B LTR ERV1 1 861 -2 209 32 0 32 chr12 25611359 25611390 -118175065 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 494 249 88 31 chr12 25611662 25611753 -118174702 - MIR SINE MIR -54 208 124 1853 147 65 37 chr12 25611753 25612107 -118174348 - THE1B LTR MaLR 0 364 1 494 249 88 31 chr12 25612107 25612208 -118174247 - MIR SINE MIR -138 124 5 259 224 24 71 chr12 25612989 25613074 -118173381 + Charlie2 DNA MER1_type 27 107 -2675 1198 134 20 111 chr12 25613124 25613450 -118173005 + LOR1-int LTR ERV1 4545 4853 -1410 191 35 0 35 chr12 25614122 25614151 -118172304 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 5238 135 27 47 chr12 25614179 25614344 -118172111 + LOR1-int LTR ERV1 3441 3608 -2723 2134 60 84 14 chr12 25614344 25614628 -118171827 + AluY SINE Alu 3 306 -5 5238 135 27 47 chr12 25614628 25614985 -118171470 + LOR1-int LTR ERV1 3608 3971 -2360 2038 106 0 7 chr12 25614985 25615310 -118171145 + AluSg SINE Alu 1 323 0 5238 135 27 47 chr12 25615310 25615654 -118170801 + LOR1-int LTR ERV1 3971 4320 -2011 2112 129 0 3 chr12 25615654 25615948 -118170507 - AluSx SINE Alu -19 293 1 5238 135 27 47 chr12 25615948 25616032 -118170423 + LOR1-int LTR ERV1 4320 5430 -901 23 0 0 0 chr12 25616666 25616689 -118169766 + AT_rich Low_complexity Low_complexity 1 23 0 3789 153 64 26 chr12 25616701 25617420 -118169035 + LOR1-int LTR ERV1 5422 6167 -164 2003 107 48 0 chr12 25617441 25617562 -118168893 + AluSp SINE Alu 1 115 -216 245 51 26 0 chr12 25617562 25617601 -118168854 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 2003 107 48 0 chr12 25617601 25617797 -118168658 + AluSp SINE Alu 115 331 0 1757 80 43 114 chr12 25617797 25617841 -118168614 - LTR24B LTR ERV1 -274 302 256 1575 177 30 10 chr12 25617841 25618141 -118168314 - AluJo SINE Alu -2 310 5 1757 80 43 114 chr12 25618141 25618421 -118168034 - LTR24B LTR ERV1 -320 256 1 315 330 94 35 chr12 25618711 25619050 -118167405 - HAL1 LINE L1 -2144 363 5 960 178 0 0 chr12 25619164 25619321 -118167134 - AluSg/x SINE Alu 0 310 154 11353 42 13 32 chr12 25619533 25620934 -118165521 - SVA Other Other -6 1380 7 2442 155 57 26 chr12 25620968 25621483 -118164972 - MLT2C2 LTR ERVL 0 520 2 928 256 32 26 chr12 25621755 25622196 -118164259 - L1MC4 LINE L1 -390 7652 7213 330 273 2 23 chr12 25622664 25622781 -118163674 + MIR SINE MIR 39 152 -81 1725 132 28 38 chr12 25622792 25623080 -118163375 + AluJb SINE Alu 1 285 -27 2985 149 61 16 chr12 25623178 25623613 -118162842 + MER68 LTR ERV1 1 464 -98 2218 97 3 3 chr12 25623613 25623911 -118162544 - AluSc SINE Alu -11 298 1 2985 149 61 16 chr12 25623911 25623984 -118162471 + MER68 LTR ERV1 464 532 -30 303 173 0 99 chr12 25623984 25624065 -118162390 + MIR SINE MIR 116 188 -74 1105 180 12 0 chr12 25624173 25624345 -118162110 + FAM SINE Alu 1 174 -1 240 163 0 0 chr12 25624491 25624534 -118161921 + (TG)n Simple_repeat Simple_repeat 1 43 0 713 175 487 13 chr12 25625173 25625401 -118161054 + MER21B LTR ERV1 1 336 -527 474 155 134 0 chr12 25625587 25625684 -118160771 + L1MA7 LINE L1 5459 5568 -723 701 234 0 14 chr12 25625702 25625843 -118160612 + AluJo SINE Alu 124 262 -50 211 70 23 23 chr12 25625846 25625889 -118160566 + (TTAAA)n Simple_repeat Simple_repeat 3 45 0 4217 129 33 19 chr12 25625889 25625936 -118160519 + L1MA7 LINE L1 5610 5655 -636 2018 175 12 15 chr12 25625936 25626273 -118160182 - MER1B DNA MER1_type 0 337 2 4217 129 33 19 chr12 25626273 25626894 -118159561 + L1MA7 LINE L1 5655 6287 -4 1858 236 126 70 chr12 25626979 25628164 -118158291 + L1ME3A LINE L1 3768 5018 -1128 230 158 24 73 chr12 25628313 25628395 -118158060 + L1ME3A LINE L1 5313 5390 -772 1773 154 49 0 chr12 25628398 25628683 -118157772 + AluJb SINE Alu 1 299 -13 1396 193 53 19 chr12 25628683 25629004 -118157451 - Charlie1 DNA MER1_type -910 1851 1520 709 135 0 0 chr12 25629007 25629111 -118157344 + FLAM_C SINE Alu 31 134 -9 1508 124 0 0 chr12 25629135 25629352 -118157103 + AluSg/x SINE Alu 93 309 -3 207 0 0 0 chr12 25629352 25629375 -118157080 + (TA)n Simple_repeat Simple_repeat 1 23 0 273 181 153 0 chr12 25629696 25629768 -118156687 + L1ME3A LINE L1 5887 5969 -201 290 337 47 21 chr12 25629806 25629999 -118156456 + L1ME3A LINE L1 5963 6160 -10 2071 125 34 0 chr12 25630490 25630785 -118155670 + AluSx SINE Alu 1 305 -7 308 346 47 0 chr12 25630786 25630893 -118155562 + L2 LINE L2 3201 3312 -1 3502 120 102 11 chr12 25630993 25631551 -118154904 + LTR9 LTR ERV1 1 609 -3 750 234 51 11 chr12 25631650 25631825 -118154630 + MLT1G1 LTR MaLR 6 187 -408 * 867 57 49 16 chr12 25631821 25631943 -118154512 + MER21A LTR ERV1 31 156 -775 773 169 0 42 chr12 25631973 25632115 -118154340 + FLAM_C SINE Alu 5 140 -3 249 220 40 0 chr12 25632115 25632165 -118154290 + MER21A LTR ERV1 213 264 -667 2212 164 37 35 chr12 25632168 25632563 -118153892 + MER21A LTR ERV1 377 772 -159 3452 133 4 0 chr12 25632563 25633073 -118153382 + MER41B LTR ERV1 1 512 -123 948 145 0 0 chr12 25633200 25633331 -118153124 - AluSg SINE Alu -179 131 1 2122 142 0 0 chr12 25633457 25633768 -118152687 + AluSq SINE Alu 1 311 -2 1282 243 78 18 chr12 25634276 25634671 -118151784 - L1MEc LINE L1 -5925 471 53 1896 158 3 3 chr12 25635128 25635425 -118151030 + AluJb SINE Alu 1 297 -15 595 292 0 0 chr12 25636497 25636651 -118149804 - MER63A DNA MER1_type 0 210 57 3194 142 26 17 chr12 25636666 25637199 -118149256 - MER61E LTR ERV1 -5 789 4 244 210 0 97 chr12 25637177 25637239 -118149216 - MER63A DNA MER1_type 0 57 2 * 510 252 7 7 chr12 25637523 25637662 -118148793 - LTR37B LTR ERV1 -2 466 328 2006 186 9 3 chr12 25637662 25638000 -118148455 + MER41D-int LTR ERV1 6256 6595 -81 251 83 0 0 chr12 25638088 25638124 -118148331 + MER41D-int LTR ERV1 7114 7149 -56 1882 163 0 0 chr12 25638124 25638412 -118148043 + AluJo SINE Alu 1 288 -24 1947 121 0 15 chr12 25638420 25638736 -118147719 + AluSx SINE Alu 15 326 0 940 219 31 0 chr12 25638816 25639008 -118147447 + MER41D LTR ERV1 1 198 -359 1858 201 41 0 chr12 25639046 25639440 -118147015 + MER41B LTR ERV1 138 547 -88 332 178 50 30 chr12 25639446 25639547 -118146908 - LTR37B LTR ERV1 -122 346 244 2570 124 89 2 chr12 25639938 25640332 -118146123 - MSTA LTR MaLR 0 428 1 2191 109 0 7 chr12 25640500 25640802 -118145653 - AluSx SINE Alu -12 300 1 565 227 80 0 chr12 25640878 25641028 -118145427 - MER20B DNA MER1_type -429 354 193 25 31 0 0 chr12 25641429 25641461 -118144994 + AT_rich Low_complexity Low_complexity 1 32 0 291 203 47 0 chr12 25641533 25641597 -118144858 + L2 LINE L2 3243 3309 -4 2183 106 0 0 chr12 25641707 25642023 -118144432 - AluSx SINE Alu 0 316 1 3030 151 43 17 chr12 25642171 25642700 -118143755 + LTR35 LTR ERV1 76 618 0 908 174 45 13 chr12 25642845 25643000 -118143455 + FRAM SINE Alu 1 160 -6 2169 116 0 19 chr12 25643003 25643314 -118143141 + AluSq SINE Alu 1 305 -8 989 109 23 0 chr12 25643433 25643561 -118142894 + FLAM_C SINE Alu 1 131 -2 813 279 37 25 chr12 25643817 25644061 -118142394 - MIR SINE MIR -8 254 8 1709 162 67 0 chr12 25644137 25644421 -118142034 - AluJb SINE Alu -9 303 1 1072 141 23 6 chr12 25644803 25644980 -118141475 + MER3 DNA MER1_type 2 181 -28 2654 43 0 0 chr12 25645250 25645551 -118140904 + AluY SINE Alu 1 301 -10 1607 168 31 3 chr12 25645719 25646005 -118140450 + AluJb SINE Alu 9 302 -10 1398 210 35 43 chr12 25646057 25646429 -118140026 + MLT1B LTR MaLR 22 390 0 189 0 0 0 chr12 25647163 25647184 -118139271 + (TATG)n Simple_repeat Simple_repeat 2 22 0 1214 160 19 123 chr12 25647184 25647376 -118139079 - AluJo SINE Alu -27 285 137 2100 96 38 14 chr12 25647376 25647668 -118138787 - AluSg SINE Alu 0 310 12 1214 160 19 123 chr12 25647668 25647793 -118138662 - AluJo SINE Alu -175 137 1 730 217 47 113 chr12 25648202 25648606 -118137849 + MLT1F1 LTR MaLR 55 534 -8 694 239 184 5 chr12 25648664 25648882 -118137573 - MIR SINE MIR -4 258 2 1837 201 91 3 chr12 25649052 25649415 -118137040 - MSTD LTR MaLR 0 396 2 1805 193 57 8 chr12 25649416 25649768 -118136687 - MSTD-int LTR MaLR 0 1735 1367 936 220 6 0 chr12 25649770 25649938 -118136517 + FAM SINE Alu 1 169 -16 2416 238 85 65 chr12 25649939 25650658 -118135797 - MSTD-int LTR MaLR -359 1376 644 2025 228 7 2 chr12 25650659 25651085 -118135370 - MSTD-int LTR MaLR -1306 429 2 1716 165 73 71 chr12 25651087 25651391 -118135064 - MSTD LTR MaLR 0 396 89 2579 62 0 0 chr12 25651391 25651696 -118134759 - AluY SINE Alu -6 305 1 1716 165 73 71 chr12 25651696 25651786 -118134669 - MSTD LTR MaLR -307 89 1 2262 105 0 13 chr12 25652272 25652578 -118133877 + AluSg SINE Alu 1 302 -8 474 214 143 89 chr12 25653368 25653538 -118132917 - L2 LINE L2 -1358 1956 1770 2059 121 0 27 chr12 25653538 25653835 -118132620 + AluSx SINE Alu 1 289 -23 474 214 143 89 chr12 25653835 25653888 -118132567 - L2 LINE L2 -1544 1770 1721 290 271 0 0 chr12 25653913 25653972 -118132483 - MLT-int LTR MaLR -752 983 925 4097 223 76 129 chr12 25653972 25654869 -118131586 + L2 LINE L2 800 1743 -1570 2315 102 3 0 chr12 25654869 25655174 -118131281 - AluSq SINE Alu -7 306 1 4097 223 76 129 chr12 25655174 25655712 -118130743 + L2 LINE L2 1743 2308 -1005 856 147 0 0 chr12 25655712 25655865 -118130590 - FLAM_C SINE Alu 0 153 1 4097 223 76 129 chr12 25655865 25655931 -118130524 + L2 LINE L2 2308 2376 -937 1678 143 31 17 chr12 25655931 25656224 -118130231 + L1MA8 LINE L1 5993 6289 -2 4097 223 76 129 chr12 25656224 25656308 -118130147 + L2 LINE L2 2376 2463 -850 642 176 80 40 chr12 25656308 25656433 -118130022 - FLAM_C SINE Alu -3 130 1 4097 223 76 129 chr12 25656433 25656713 -118129742 + L2 LINE L2 2463 2756 -557 1971 146 3 29 chr12 25656713 25657028 -118129427 - AluJb SINE Alu -5 307 1 4097 223 76 129 chr12 25657028 25657690 -118128765 + L2 LINE L2 2756 3313 0 2039 131 0 16 chr12 25657965 25658277 -118128178 - AluJb SINE Alu -3 309 3 503 279 61 35 chr12 25658759 25659071 -118127384 - L1MC4a LINE L1 -1854 5954 5635 226 272 114 22 chr12 25659308 25659492 -118126963 + L1MC/D LINE L1 5197 5397 -749 836 105 70 63 chr12 25659517 25659660 -118126795 - BC200 scRNA scRNA -51 149 6 777 227 87 0 chr12 25659664 25659836 -118126619 + L1MC/D LINE L1 5411 5597 -2211 1744 148 20 40 chr12 25659844 25660142 -118126313 + AluJb SINE Alu 1 292 -20 21 0 0 0 chr12 25660392 25660413 -118126042 + AT_rich Low_complexity Low_complexity 1 21 0 938 273 80 22 chr12 25660440 25660803 -118125652 - LTR33 LTR ERVL -84 437 54 1762 126 20 0 chr12 25661149 25661396 -118125059 + AluSx SINE Alu 34 285 -27 1101 125 26 31 chr12 25661592 25661784 -118124671 - AluJ SINE Alu -2 310 120 24 0 0 0 chr12 25661786 25661810 -118124645 + AT_rich Low_complexity Low_complexity 1 24 0 851 20 0 0 chr12 25661810 25661908 -118124547 - SVA Other Other -1 1385 1288 1675 168 33 0 chr12 25661912 25662216 -118124239 - AluSp SINE Alu 0 313 1 861 259 29 13 chr12 25663254 25663493 -118122962 - MIR SINE MIR -1 261 19 1740 200 0 0 chr12 25663550 25663850 -118122605 + AluSx SINE Alu 1 300 -12 829 110 0 0 chr12 25663961 25664070 -118122385 - AluJ SINE Alu -201 111 3 914 154 20 56 chr12 25666541 25666736 -118119719 + MER53 DNA DNA 2 189 0 406 289 132 0 chr12 25666752 25666866 -118119589 + L2 LINE L2 3133 3261 -11 1698 169 4 4 chr12 25666915 25667194 -118119261 + AluSx SINE Alu 13 291 -21 868 146 28 14 chr12 25667233 25667377 -118119078 + FAM SINE Alu 24 169 -16 1241 159 0 56 chr12 25667976 25668208 -118118247 + AluJb SINE Alu 87 305 -7 2334 72 24 3 chr12 25668510 25668801 -118117654 - AluSg SINE Alu -13 297 1 295 269 10 48 chr12 25668960 25669064 -118117391 - LTR16A1 LTR ERVL -315 142 43 2179 129 3 0 chr12 25669372 25669681 -118116774 - AluSx SINE Alu -2 310 1 207 0 0 0 chr12 25670083 25670106 -118116349 + (CTAAT)n Simple_repeat Simple_repeat 5 27 0 646 194 37 30 chr12 25670115 25670249 -118116206 - AluJb SINE Alu -41 271 137 418 280 150 31 chr12 25670380 25670573 -118115882 + MIR SINE MIR 33 248 -14 630 283 143 0 chr12 25670654 25670877 -118115578 + MIR SINE MIR 8 262 0 183 208 0 42 chr12 25672278 25672326 -118114129 + L3 LINE CR1 622 667 -910 5243 145 39 0 chr12 25672518 25673618 -118112837 + L1PA16 LINE L1 5017 6166 0 329 274 59 15 chr12 25673631 25673766 -118112689 - L1ME4a LINE L1 -6 6115 5975 1310 231 108 67 chr12 25673874 25674276 -118112179 - L1MC5 LINE L1 -131 7830 7446 2259 109 0 0 chr12 25674276 25674561 -118111894 - AluSq SINE Alu -28 285 1 1310 231 108 67 chr12 25674561 25674680 -118111775 - L1MC5 LINE L1 -515 7446 7333 201 39 0 0 chr12 25674680 25674706 -118111749 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1310 231 108 67 chr12 25674706 25674723 -118111732 - L1MC5 LINE L1 -628 7333 7318 506 125 0 12 chr12 25674723 25674803 -118111652 - MADE1 DNA Mariner -1 79 1 1310 231 108 67 chr12 25674803 25675059 -118111396 - L1MC5 LINE L1 -643 7318 7001 838 148 7 7 chr12 25675059 25675194 -118111261 + AluJo SINE Alu 1 135 -177 2030 152 0 0 chr12 25675196 25675493 -118110962 + AluSx SINE Alu 1 297 -15 1941 155 0 10 chr12 25675761 25676051 -118110404 + AluJo SINE Alu 2 288 -24 1315 218 43 94 chr12 25676320 25676807 -118109648 - MLT2B1 LTR ERVL -58 462 1 1897 154 38 0 chr12 25676935 25677228 -118109227 + AluJb SINE Alu 2 305 -7 547 242 82 41 chr12 25677784 25677978 -118108477 - MIR SINE MIR -57 205 4 726 178 98 25 chr12 25678397 25678560 -118107895 - MER5A DNA MER1_type -14 175 1 2270 112 0 13 chr12 25678884 25679198 -118107257 - AluSx SINE Alu -2 310 1 1941 139 14 0 chr12 25679289 25679577 -118106878 + AluSx SINE Alu 5 296 -16 287 289 79 69 chr12 25679733 25679934 -118106521 + L1ME LINE L1 5425 5622 -499 1954 154 0 3 chr12 25679934 25680240 -118106215 + AluJo SINE Alu 1 305 -7 287 289 79 69 chr12 25680240 25680428 -118106027 + L1ME LINE L1 5622 5823 -298 2610 51 0 3 chr12 25680602 25680914 -118105541 - AluY SINE Alu 0 311 1 28 0 0 0 chr12 25680962 25680990 -118105465 + AT_rich Low_complexity Low_complexity 1 28 0 180 136 91 23 chr12 25681725 25681769 -118104686 + L2 LINE L2 3263 3309 -4 225 65 0 0 chr12 25681828 25681859 -118104596 + (A)n Simple_repeat Simple_repeat 1 31 0 2239 117 0 0 chr12 25682653 25682952 -118103503 + AluSx SINE Alu 1 299 -13 2155 110 52 0 chr12 25683220 25683511 -118102944 + AluSx SINE Alu 1 306 -6 2630 152 19 42 chr12 25684083 25684175 -118102280 - L1MB7 LINE L1 0 6184 6091 2156 156 0 0 chr12 25684175 25684482 -118101973 + AluSx SINE Alu 1 307 -5 2630 152 19 42 chr12 25684482 25684917 -118101538 - L1MB7 LINE L1 -93 6091 5669 1659 174 3 37 chr12 25684926 25685247 -118101208 - AluJo SINE Alu -2 310 1 390 222 17 26 chr12 25685433 25685550 -118100905 - LTR67 LTR ERVL -7 550 435 2863 193 76 63 chr12 25685719 25686534 -118099921 - LTR1B LTR ERV1 0 826 1 234 317 61 12 chr12 25686534 25686616 -118099839 + L2 LINE L2 3155 3240 -32 416 317 35 28 chr12 25686682 25686827 -118099628 + L2 LINE L2 3121 3266 -6 331 239 37 18 chr12 25686923 25687032 -118099423 - L1ME LINE L1 -323 5798 5688 518 250 43 7 chr12 25687058 25687198 -118099257 + L2 LINE L2 3160 3304 -9 1090 182 0 0 chr12 25687832 25688008 -118098447 - AluJb SINE Alu 0 312 137 533 299 64 0 chr12 25688727 25688914 -118097541 + MIR SINE MIR 15 213 -49 1842 149 14 0 chr12 25688981 25689257 -118097198 + AluSx SINE Alu 31 310 -2 2433 95 0 0 chr12 25689585 25689891 -118096564 + AluSq SINE Alu 3 308 -5 23 0 0 0 chr12 25690572 25690595 -118095860 + AT_rich Low_complexity Low_complexity 1 23 0 246 271 0 0 chr12 25691075 25691134 -118095321 + MIR SINE MIR 150 208 -54 1706 239 83 8 chr12 25691901 25692243 -118094212 - L2 LINE L2 -160 3153 2838 230 0 33 0 chr12 25692243 25692273 -118094182 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1706 239 83 8 chr12 25692273 25692532 -118093923 - L2 LINE L2 -475 2838 2505 2035 258 89 10 chr12 25692549 25692671 -118093784 - L2 LINE L2 -1879 1435 1324 953 184 8 98 chr12 25692671 25692916 -118093539 - MER58A DNA MER1_type -1 223 1 2035 258 89 10 chr12 25692916 25693421 -118093034 - L2 LINE L2 -1990 1324 758 3399 161 31 31 chr12 25693786 25694128 -118092327 - L1MB7 LINE L1 -10 6174 5833 2441 85 0 0 chr12 25694128 25694433 -118092022 - AluY SINE Alu -6 305 1 3399 161 31 31 chr12 25694433 25694656 -118091799 - L1MB7 LINE L1 -351 5833 5605 2108 121 3 0 chr12 25694656 25694964 -118091491 - AluSq SINE Alu 0 309 1 3399 161 31 31 chr12 25694964 25695102 -118091353 - L1MB7 LINE L1 -578 5606 5469 24 0 0 0 chr12 25695176 25695200 -118091255 + AT_rich Low_complexity Low_complexity 1 24 0 1304 188 6 113 chr12 25695651 25695971 -118090484 - AluJo SINE Alu -16 286 1 370 333 90 7 chr12 25696047 25696191 -118090264 + MIR SINE MIR 36 191 -71 967 178 0 22 chr12 25696407 25696587 -118089868 - FRAM SINE Alu -3 173 1 255 241 102 66 chr12 25696711 25696877 -118089578 + MIR SINE MIR 3 174 -88 2210 102 10 3 chr12 25697133 25697426 -118089029 - AluSx SINE Alu -17 295 1 207 288 34 0 chr12 25698060 25698119 -118088336 - L2 LINE L2 -9 3304 3244 2200 93 30 0 chr12 25698400 25698701 -118087754 - AluSp SINE Alu -3 310 1 1390 201 28 22 chr12 25699279 25699638 -118086817 - MLT1A1 LTR MaLR 0 365 5 2217 115 3 3 chr12 25699690 25699994 -118086461 - AluSg SINE Alu -6 304 1 553 205 87 25 chr12 25700215 25700376 -118086079 - Charlie8 DNA MER1_type -2193 224 54 261 294 33 11 chr12 25700398 25700490 -118085965 + L2 LINE L2 3146 3239 -33 207 224 20 20 chr12 25702923 25702972 -118083483 + L2 LINE L2 3193 3241 -31 2068 121 7 0 chr12 25704036 25704316 -118082139 - AluSx SINE Alu -8 304 23 2367 95 7 0 chr12 25705100 25705396 -118081059 + AluSx SINE Alu 1 298 -14 456 298 75 0 chr12 25705446 25705607 -118080848 - MIR3 SINE MIR 0 208 36 232 337 92 0 chr12 25705791 25705889 -118080566 + L2 LINE L2 3205 3311 -2 2520 48 0 0 chr12 25706174 25706468 -118079987 - AluY SINE Alu -16 295 2 440 214 20 41 chr12 25706658 25706756 -118079699 - MIR SINE MIR -147 115 20 1725 168 19 16 chr12 25706966 25707275 -118079180 + AluJo SINE Alu 1 310 -2 1103 262 89 14 chr12 25707595 25708097 -118078358 - L2 LINE L2 -74 3239 2702 202 263 125 0 chr12 25708128 25708208 -118078247 - L2 LINE L2 -600 2714 2625 1590 152 36 110 chr12 25708210 25708546 -118077909 - AluSx SINE Alu -1 311 1 245 254 0 0 chr12 25708631 25708694 -118077761 - MER112 DNA MER1_type -111 149 87 423 68 0 0 chr12 25708695 25708754 -118077701 + (TG)n Simple_repeat Simple_repeat 2 60 0 626 329 77 11 chr12 25708801 25709075 -118077380 - L2 LINE L2 -683 2631 2340 2287 89 0 3 chr12 25709212 25709504 -118076951 - AluSc SINE Alu -18 291 1 2324 279 63 38 chr12 25709762 25710680 -118075775 + L1MB1 LINE L1 1596 2536 -4950 11568 195 56 34 chr12 25710731 25714189 -118072266 + L1MB1 LINE L1 3083 6665 -922 6036 87 25 2 chr12 25714189 25715029 -118071426 - L1PA11 LINE L1 0 6174 5355 2267 94 7 19 chr12 25715029 25715336 -118071119 - AluSx SINE Alu -9 303 1 6036 87 25 2 chr12 25715336 25716199 -118070256 - L1PA11 LINE L1 -819 5355 4438 11568 195 56 34 chr12 25716199 25716434 -118070021 + L1MB1 LINE L1 6665 6893 -694 2409 72 13 3 chr12 25716444 25716748 -118069707 + AluY SINE Alu 1 307 -4 979 87 0 47 chr12 25716748 25716880 -118069575 + AluY SINE Alu 168 294 -17 4043 128 14 22 chr12 25716880 25716988 -118069467 + L1MB1 LINE L1 6896 7003 -584 2172 71 4 4 chr12 25716988 25717299 -118069156 + AluSc SINE Alu 1 311 0 4043 128 14 22 chr12 25717299 25717885 -118068570 + L1MB1 LINE L1 7003 7586 -1 979 87 0 47 chr12 25717885 25717901 -118068554 + AluY SINE Alu 294 309 -2 201 343 14 0 chr12 25718747 25718817 -118067638 + MIR3 SINE MIR 127 197 -11 198 0 0 0 chr12 25718944 25718966 -118067489 + (T)n Simple_repeat Simple_repeat 1 22 0 38 39 0 0 chr12 25720506 25720558 -118065897 + AT_rich Low_complexity Low_complexity 1 52 0 1002 108 0 0 chr12 25720690 25720820 -118065635 + AluJb SINE Alu 2 131 -181 2489 68 9 0 chr12 25722203 25722529 -118063926 - L1PA5 LINE L1 -5 6149 5821 377 371 0 0 chr12 25723159 25723299 -118063156 + MIR SINE MIR 3 142 -120 207 100 0 0 chr12 25723957 25723987 -118062468 + (TAGG)n Simple_repeat Simple_repeat 2 31 0 2162 144 0 0 chr12 25723992 25724298 -118062157 - AluJo SINE Alu -6 306 1 2290 216 132 19 chr12 25724380 25725239 -118061216 - L1ME2 LINE L1 0 6164 5205 2182 114 0 10 chr12 25726094 25726393 -118060062 - AluSx SINE Alu -16 296 1 245 262 262 0 chr12 25727316 25727400 -118059055 + L3 LINE CR1 1440 1545 -32 1950 141 40 23 chr12 25727403 25727707 -118058748 - AluSx SINE Alu -3 309 1 1737 188 3 3 chr12 25727984 25728272 -118058183 + AluJb SINE Alu 3 290 -22 21 0 0 0 chr12 25728275 25728296 -118058159 + AT_rich Low_complexity Low_complexity 1 21 0 1974 89 43 0 chr12 25729834 25730091 -118056364 - AluSx SINE Alu -44 268 1 222 300 63 90 chr12 25730682 25730758 -118055697 - L2 LINE L2 0 3272 3195 653 150 108 0 chr12 25730758 25730878 -118055577 + FLAM_C SINE Alu 1 133 0 222 300 63 90 chr12 25730878 25731133 -118055322 - L2 LINE L2 -77 3195 2881 2150 146 0 0 chr12 25731547 25731856 -118054599 + AluSx SINE Alu 1 309 -3 735 176 13 13 chr12 25731857 25732010 -118054445 - MIR SINE MIR -24 238 86 499 306 7 28 chr12 25732015 25732159 -118054296 - MIR SINE MIR -120 142 2 842 213 85 38 chr12 25732284 25732425 -118054030 - MER58A DNA MER1_type -2198 222 66 1858 155 42 0 chr12 25732425 25732709 -118053746 - AluJb SINE Alu -16 296 1 842 213 85 38 chr12 25732709 25732778 -118053677 - MER58A DNA MER1_type -2354 66 2 219 209 30 0 chr12 25732839 25732906 -118053549 + (TTA)n Simple_repeat Simple_repeat 2 70 0 2078 125 44 0 chr12 25733393 25733689 -118052766 - AluSx SINE Alu -3 309 1 2931 201 38 68 chr12 25733981 25734389 -118052066 - MER21B LTR ERV1 -1 862 488 1609 192 14 0 chr12 25734389 25734574 -118051881 - AluJb SINE Alu 0 320 128 2320 111 0 0 chr12 25734574 25734880 -118051575 - AluSx SINE Alu -6 306 1 1609 192 14 0 chr12 25734880 25735008 -118051447 - AluJb SINE Alu -192 128 3 2931 201 38 68 chr12 25735008 25735441 -118051014 - MER21B LTR ERV1 -375 488 44 338 253 13 0 chr12 25735440 25735515 -118050940 - MER21B LTR ERV1 -769 94 19 * 4106 181 18 34 chr12 25736837 25737753 -118048702 - L1MB7 LINE L1 -11 6173 5273 1790 115 40 0 chr12 25737854 25738107 -118048348 + AluSq SINE Alu 43 305 -8 447 297 8 24 chr12 25738317 25738449 -118048006 - MIR SINE MIR -48 160 31 2260 112 3 3 chr12 25738661 25738974 -118047481 + AluSq SINE Alu 1 313 0 26 50 0 0 chr12 25739327 25739367 -118047088 + AT_rich Low_complexity Low_complexity 1 40 0 182 286 116 18 chr12 25739814 25739926 -118046529 + MIR3 SINE MIR 82 204 -4 189 264 57 0 chr12 25740055 25740108 -118046347 + L2 LINE L2 3251 3306 -7 701 184 72 43 chr12 25740513 25740720 -118045735 + L1MC5 LINE L1 7701 7913 -48 378 301 103 19 chr12 25740750 25740906 -118045549 + MIR SINE MIR 23 191 -71 468 51 0 0 chr12 25742246 25742305 -118044150 + (TG)n Simple_repeat Simple_repeat 2 60 0 1524 219 23 7 chr12 25743601 25743903 -118042552 - AluJo SINE Alu 0 312 6 691 36 0 87 chr12 25743938 25744133 -118042322 + (TA)n Simple_repeat Simple_repeat 2 179 0 37 39 0 0 chr12 25744160 25744211 -118042244 + AT_rich Low_complexity Low_complexity 1 51 0 251 373 71 8 chr12 25744357 25744483 -118041972 + L2 LINE L2 3134 3267 -5 300 279 91 32 chr12 25744800 25744954 -118041501 + MIR SINE MIR 49 211 -51 28 71 0 0 chr12 25745226 25745282 -118041173 + AT_rich Low_complexity Low_complexity 1 56 0 22 56 0 0 chr12 25746598 25746634 -118039821 + AT_rich Low_complexity Low_complexity 1 36 0 2498 74 0 3 chr12 25747079 25747391 -118039064 - AluY SINE Alu 0 311 1 754 290 39 23 chr12 25747547 25747680 -118038775 + L1MC4a LINE L1 5421 5550 -2258 1688 147 45 33 chr12 25747680 25747920 -118038535 - MER44D DNA MER2_type -1883 608 372 2416 52 0 7 chr12 25747920 25748206 -118038249 + AluY SINE Alu 1 284 -27 1688 147 45 33 chr12 25748206 25748298 -118038157 - MER44D DNA MER2_type -2119 372 2 754 290 39 23 chr12 25748298 25748471 -118037984 + L1MC4a LINE L1 5550 5732 -2076 303 296 75 44 chr12 25748474 25748633 -118037822 + L1MC4a LINE L1 5777 5940 -1868 1066 173 51 46 chr12 25748659 25748856 -118037599 - AluJo SINE Alu -37 275 78 2003 149 3 3 chr12 25749057 25749386 -118037069 + AluJb SINE Alu 1 329 0 329 319 67 8 chr12 25750305 25750498 -118035957 - MIR SINE MIR -54 208 8 1783 198 0 6 chr12 25750845 25751158 -118035297 + AluJo SINE Alu 1 311 -1 252 0 0 0 chr12 25751280 25751308 -118035147 + (TG)n Simple_repeat Simple_repeat 2 29 0 535 187 9 9 chr12 25751521 25751628 -118034827 + MER2 DNA MER2_type 7 113 -232 3053 205 28 66 chr12 25751629 25752488 -118033967 - LTR1B LTR ERV1 0 826 1 794 184 184 10 chr12 25752492 25752688 -118033767 + MER2 DNA MER2_type 116 345 0 874 296 156 39 chr12 25752877 25753653 -118032802 - L2 LINE L2 -665 2649 1783 2307 115 0 0 chr12 25753895 25754207 -118032248 - AluSx SINE Alu 0 312 1 1679 171 33 21 chr12 25754396 25754729 -118031726 + MER1B DNA MER1_type 1 337 0 379 191 122 82 chr12 25755265 25755412 -118031043 + MIR SINE MIR 6 158 -104 552 218 56 7 chr12 25755505 25755647 -118030808 + MIR SINE MIR 114 262 0 279 316 11 42 chr12 25755724 25755819 -118030636 - MIR SINE MIR -159 103 12 252 226 0 0 chr12 25755914 25755976 -118030479 + (TTA)n Simple_repeat Simple_repeat 2 63 0 26 0 0 0 chr12 25756326 25756352 -118030103 + AT_rich Low_complexity Low_complexity 1 26 0 1830 138 0 83 chr12 25756975 25757301 -118029154 + AluJo SINE Alu 1 299 -13 3730 171 64 20 chr12 25757868 25758683 -118027772 - L1MB2 LINE L1 -2 6169 5319 21 0 0 0 chr12 25758691 25758712 -118027743 + AT_rich Low_complexity Low_complexity 1 21 0 2126 124 7 10 chr12 25758724 25758857 -118027598 + AluSx SINE Alu 1 133 -179 2272 107 0 0 chr12 25758857 25759155 -118027300 + AluSq SINE Alu 1 298 -15 2126 124 7 10 chr12 25759155 25759327 -118027128 + AluSx SINE Alu 133 305 -7 6354 212 25 48 chr12 25760639 25762583 -118023872 - L1MB2 LINE L1 -821 5325 3440 387 295 16 0 chr12 25762900 25763029 -118023426 + MER104 DNA Tc2 39 169 -11 21 36 0 0 chr12 25763951 25763979 -118022476 + AT_rich Low_complexity Low_complexity 1 28 0 293 296 67 22 chr12 25764058 25764281 -118022174 - L1ME4a LINE L1 -217 5904 5672 611 236 147 23 chr12 25764494 25764752 -118021703 - HAL1 LINE L1 0 2507 2218 4596 263 111 32 chr12 25764752 25766453 -118020002 + L2 LINE L2 968 2802 -512 2439 88 0 3 chr12 25766459 25766765 -118019690 + AluSg SINE Alu 1 305 -5 1175 166 28 63 chr12 25766765 25767189 -118019266 + L1M3 LINE L1 5323 5704 -476 1421 275 126 33 chr12 25767215 25767876 -118018579 - HAL1 LINE L1 -1784 723 2 874 301 82 39 chr12 25769197 25769612 -118016843 - MLT1J LTR MaLR -78 433 1 394 337 88 6 chr12 25769629 25769810 -118016645 - MIR3 SINE MIR -3 205 10 24 53 0 0 chr12 25769867 25769905 -118016550 + AT_rich Low_complexity Low_complexity 1 38 0 253 122 0 0 chr12 25770390 25770431 -118016024 + L1ME LINE L1 5541 5581 -540 217 333 0 67 chr12 25771754 25771811 -118014644 + MIR3 SINE MIR 68 116 -92 2621 46 0 0 chr12 25771811 25772115 -118014340 - AluY SINE Alu -7 304 1 217 333 0 67 chr12 25772115 25772162 -118014293 + MIR3 SINE MIR 116 165 -43 248 259 0 0 chr12 25773009 25773063 -118013392 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 442 177 34 11 chr12 25773067 25773242 -118013213 + (TA)n Simple_repeat Simple_repeat 2 180 0 21 71 0 0 chr12 25773479 25773521 -118012934 + AT_rich Low_complexity Low_complexity 1 42 0 1228 151 43 0 chr12 25773956 25774188 -118012267 + Tigger7 DNA MER2_type 2246 2487 0 506 139 5 233 chr12 25775764 25775966 -118010489 - L2 LINE L2 0 3313 3158 981 152 0 18 chr12 25776126 25776290 -118010165 - FRAM SINE Alu -5 161 1 2274 109 3 0 chr12 25776424 25776717 -118009738 - AluSp SINE Alu -19 294 1 1027 237 92 58 chr12 25777014 25777675 -118008780 + L2 LINE L2 2622 3304 -9 369 290 73 24 chr12 25777913 25778037 -118008418 - L2 LINE L2 -1 3271 3142 27 29 0 0 chr12 25778426 25778460 -118007995 + AT_rich Low_complexity Low_complexity 1 34 0 2573 69 0 0 chr12 25779139 25779445 -118007010 - AluY SINE Alu -5 306 1 871 187 101 0 chr12 25779463 25779672 -118006783 - MER33 DNA MER1_type -94 230 1 257 296 23 11 chr12 25779892 25779980 -118006475 + MIR3 SINE MIR 108 196 -12 2190 104 0 0 chr12 25780006 25780339 -118006116 - AluSg SINE Alu 0 333 1 918 168 37 14 chr12 25780423 25780637 -118005818 - L1MB8 LINE L1 -6 6172 5954 2313 83 23 0 chr12 25780678 25780978 -118005477 - AluSx SINE Alu -5 307 1 635 213 52 11 chr12 25782021 25782195 -118004260 - L1MB8 LINE L1 -41 6137 5957 1759 190 66 0 chr12 25782211 25782605 -118003850 + L1ME LINE L1 5278 5697 -469 191 382 42 61 chr12 25782608 25782820 -118003635 + L2 LINE L2 3001 3208 -64 1914 141 32 0 chr12 25783250 25783534 -118002921 - AluSq SINE Alu -20 293 1 2015 137 3 10 chr12 25783667 25783973 -118002482 - AluJb SINE Alu -8 304 1 24 32 0 0 chr12 25784067 25784098 -118002357 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr12 25784402 25784424 -118002031 + AT_rich Low_complexity Low_complexity 1 22 0 2226 88 30 13 chr12 25784667 25784972 -118001483 - AluSx SINE Alu -2 310 1 2089 127 3 0 chr12 25785003 25785302 -118001153 - AluSx SINE Alu -12 300 1 2024 113 0 30 chr12 25785304 25785604 -118000851 - AluSx SINE Alu -19 293 3 266 303 133 30 chr12 25786282 25786447 -118000008 - MIR SINE MIR -74 188 7 347 113 16 0 chr12 25787020 25787082 -117999373 + (GA)n Simple_repeat Simple_repeat 1 63 0 2582 29 3 13 chr12 25787180 25787491 -117998964 + AluY SINE Alu 1 308 -3 212 278 30 107 chr12 25787579 25787624 -117998831 + MER5A DNA MER1_type 11 42 -147 473 248 218 0 chr12 25787624 25787757 -117998698 - MER5A DNA MER1_type -2 187 26 673 201 106 56 chr12 25787804 25787983 -117998472 - MER5A DNA MER1_type -1 188 1 1034 216 42 0 chr12 25787992 25788205 -117998250 + MER58A DNA MER1_type 3 224 0 1558 181 66 7 chr12 25788923 25789211 -117997244 + AluJo SINE Alu 1 305 -7 320 260 135 103 chr12 25789502 25789910 -117996545 + L1ME4a LINE L1 5697 6117 -4 23 0 0 0 chr12 25790306 25790329 -117996126 + AT_rich Low_complexity Low_complexity 1 23 0 329 276 20 20 chr12 25790496 25790594 -117995861 + MIR SINE MIR 47 144 -64 270 0 0 0 chr12 25790772 25790802 -117995653 + (TG)n Simple_repeat Simple_repeat 1 30 0 358 318 139 55 chr12 25791087 25791356 -117995099 - L2 LINE L2 0 3313 3068 6402 93 26 12 chr12 25791356 25792802 -117993653 - L1PA14 LINE L1 0 6161 4702 358 318 139 55 chr12 25792802 25793470 -117992985 - L2 LINE L2 -245 3068 2308 24 0 0 0 chr12 25794022 25794046 -117992409 + AT_rich Low_complexity Low_complexity 1 24 0 345 307 59 15 chr12 25794071 25794273 -117992182 - L1M4 LINE L1 -1367 4779 4569 255 263 80 45 chr12 25794544 25794768 -117991687 + L1M4 LINE L1 4798 5029 -1117 285 250 0 0 chr12 25795103 25795163 -117991292 + L2 LINE L2 2183 2242 -1072 797 333 177 13 chr12 25795262 25795811 -117990644 + L2 LINE L2 2259 2897 -417 369 294 65 24 chr12 25795995 25796165 -117990290 + L2 LINE L2 3135 3311 -2 182 271 180 49 chr12 25796337 25796459 -117989996 + L2 LINE L2 2912 3049 -223 2331 113 3 0 chr12 25796490 25796801 -117989654 - AluSp SINE Alu -1 312 1 2241 71 0 0 chr12 25796995 25797332 -117989123 + AluY SINE Alu 1 337 0 424 331 176 25 chr12 25798548 25798793 -117987662 - L2 LINE L2 -1 3271 2990 323 354 148 15 chr12 25799133 25799458 -117986997 - L1MC4a LINE L1 -1933 5875 5508 238 261 106 0 chr12 25799522 25799683 -117986772 - L1MC4a LINE L1 -771 5375 5198 1456 189 84 3 chr12 25800726 25801011 -117985444 - AluJo SINE Alu -4 308 1 2385 109 0 0 chr12 25801092 25801396 -117985059 - AluSx SINE Alu -8 304 1 9402 94 70 2 chr12 25801689 25804358 -117982097 + L1PBa LINE L1 1 2925 -3938 2150 120 3 16 chr12 25805654 25805962 -117980493 - AluSx SINE Alu -8 304 1 358 277 87 22 chr12 25805996 25806227 -117980228 + HAL1 LINE L1 1076 1321 -1186 1298 258 63 45 chr12 25806265 25806947 -117979508 + HAL1 LINE L1 1425 2118 -389 383 306 170 5 chr12 25806967 25807282 -117979173 + L2 LINE L2 2726 3146 -167 1586 157 0 90 chr12 25807419 25807560 -117978895 - AluSx SINE Alu -38 274 173 2411 92 0 0 chr12 25807560 25807866 -117978589 - AluSg SINE Alu -4 306 1 1586 157 0 90 chr12 25807866 25808024 -117978431 - AluSx SINE Alu -139 173 2 607 271 99 0 chr12 25808025 25808206 -117978249 - MIR SINE MIR -59 203 5 1365 155 122 62 chr12 25808261 25808391 -117978064 + THE1C LTR MaLR 1 122 -253 3733 101 87 7 chr12 25808391 25808956 -117977499 - LTR9 LTR ERV1 -2 610 1 1365 155 122 62 chr12 25808956 25809179 -117977276 + THE1C LTR MaLR 122 375 0 237 268 0 56 chr12 25809188 25809259 -117977196 + L2 LINE L2 3247 3313 0 2215 97 4 0 chr12 25809309 25809588 -117976867 - AluSq SINE Alu -12 301 22 193 235 10 61 chr12 25810165 25810263 -117976192 + L2 LINE L2 2540 2632 -682 2040 213 34 48 chr12 25810280 25810927 -117975528 - MLT1D-int LTR MaLR -732 639 2 242 246 0 0 chr12 25810939 25810996 -117975459 - MLT1D LTR MaLR -12 493 437 1806 156 39 3 chr12 25810996 25811278 -117975177 - AluSx SINE Alu -20 292 1 254 276 29 38 chr12 25811857 25811962 -117974493 - L1ME3A LINE L1 -104 6066 5963 240 181 153 0 chr12 25812000 25812072 -117974383 - L1ME3A LINE L1 -201 5969 5887 270 0 0 0 chr12 25812393 25812423 -117974032 + (TA)n Simple_repeat Simple_repeat 1 30 0 2092 138 6 6 chr12 25812423 25812735 -117973720 - AluSx SINE Alu 0 312 1 2283 116 0 0 chr12 25812919 25813229 -117973226 - AluJb SINE Alu -2 310 1 306 208 117 0 chr12 25813341 25813418 -117973037 + L2 LINE L2 2186 2271 -1043 6097 140 19 24 chr12 25814190 25815263 -117971192 + L1M1 LINE L1 1250 2316 -5249 985 141 23 6 chr12 25815473 25815650 -117970805 + MER3 DNA MER1_type 2 181 -28 2227 78 0 7 chr12 25815920 25816237 -117970218 + AluY SINE Alu 1 315 0 294 203 47 0 chr12 25816347 25816411 -117970044 - L2 LINE L2 -4 3309 3243 25 31 0 0 chr12 25816483 25816515 -117969940 + AT_rich Low_complexity Low_complexity 1 32 0 487 225 63 0 chr12 25816915 25817057 -117969398 + MER20B DNA MER1_type 193 343 -440 2267 106 0 7 chr12 25817141 25817443 -117969012 + AluSx SINE Alu 1 300 -12 209 277 62 0 chr12 25817712 25817777 -117968678 + MIR SINE MIR 53 121 -141 197 336 52 35 chr12 25817927 25818043 -117968412 - MIR SINE MIR -61 147 30 7830 134 14 39 chr12 26018356 26019753 -117766702 + THE1C-int LTR MaLR 219 1580 0 1616 174 64 25 chr12 26019753 26020114 -117766341 + THE1C LTR MaLR 1 375 0 4580 153 50 41 chr12 26020478 26020591 -117765864 - L1MA9 LINE L1 -30 6282 6171 342 0 0 0 chr12 26020591 26020629 -117765826 + (TG)n Simple_repeat Simple_repeat 1 38 0 4580 153 50 41 chr12 26020629 26021467 -117764988 - L1MA9 LINE L1 -141 6171 5321 2118 113 0 26 chr12 26021467 26021769 -117764686 - AluSg SINE Alu -16 294 1 4580 153 50 41 chr12 26021769 26021998 -117764457 - L1MA9 LINE L1 -991 5321 5096 700 301 124 13 chr12 26022668 26022974 -117763481 + L2 LINE L2 2957 3296 -17 247 320 147 0 chr12 26023168 26023318 -117763137 + L3 LINE CR1 804 975 -602 7338 37 7 7 chr12 26023387 26024811 -117761644 + L1PA6 LINE L1 4732 6154 0 467 294 242 4 chr12 26024895 26025147 -117761308 + L3 LINE CR1 1188 1499 -78 181 301 0 86 chr12 26025867 26025960 -117760495 + L2 LINE L2 3176 3260 -12 581 297 82 30 chr12 26025978 26026281 -117760174 + L2 LINE L2 2579 2897 -417 212 304 131 84 chr12 26026282 26026429 -117760026 + L2 LINE L2 3024 3188 -84 1980 121 0 7 chr12 26026429 26026719 -117759736 + AluSg SINE Alu 1 288 -22 212 304 131 84 chr12 26026719 26026808 -117759647 + L2 LINE L2 3188 3271 -1 554 147 0 10 chr12 26027221 26027323 -117759132 + (TG)n Simple_repeat Simple_repeat 2 102 0 2029 109 0 7 chr12 26027332 26027617 -117758838 - AluSq SINE Alu -30 283 1 22 35 0 0 chr12 26032891 26032920 -117753535 + AT_rich Low_complexity Low_complexity 1 29 0 1756 170 13 26 chr12 26033001 26033307 -117753148 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr12 26033511 26033533 -117752922 + AT_rich Low_complexity Low_complexity 1 22 0 186 186 136 17 chr12 26034756 26034815 -117751640 - MER5A DNA MER1_type -114 75 10 515 153 119 119 chr12 26034831 26035008 -117751447 + MER3 DNA MER1_type 1 130 -79 201 317 0 49 chr12 26035367 26035449 -117751006 + MIR3 SINE MIR 107 184 -24 1898 163 7 13 chr12 26037372 26037679 -117748776 + AluJb SINE Alu 1 305 -7 186 184 0 0 chr12 26038229 26038267 -117748188 + L2 LINE L2 3210 3247 -25 23 0 0 0 chr12 26038355 26038378 -117748077 + AT_rich Low_complexity Low_complexity 1 23 0 456 286 103 49 chr12 26038445 26038669 -117747786 + MIR SINE MIR 22 257 -5 201 286 78 26 chr12 26038901 26038978 -117747477 + MIR3 SINE MIR 109 189 -19 180 111 0 0 chr12 26039492 26039519 -117746936 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 23 33 0 0 chr12 26039597 26039627 -117746828 + AT_rich Low_complexity Low_complexity 1 30 0 283 310 26 9 chr12 26039963 26040079 -117746376 - L2 LINE L2 -4 3309 3192 2402 66 0 0 chr12 26040874 26041162 -117745293 + AluY SINE Alu 1 288 -23 286 211 0 0 chr12 26041257 26041309 -117745146 + MLT1I LTR MaLR 358 409 0 23 68 0 0 chr12 26041376 26041420 -117745035 + AT_rich Low_complexity Low_complexity 1 44 0 234 223 125 9 chr12 26041536 26041648 -117744807 + L1ME4a LINE L1 5985 6109 -12 189 213 0 0 chr12 26042509 26042556 -117743899 + (TG)n Simple_repeat Simple_repeat 2 48 0 7196 46 9 0 chr12 26042831 26044089 -117742366 + L1PA5 LINE L1 4886 6151 -3 234 0 0 0 chr12 26044097 26044123 -117742332 + (CA)n Simple_repeat Simple_repeat 1 26 0 264 292 0 0 chr12 26044756 26044821 -117741634 + L2 LINE L2 3206 3270 -2 2124 113 10 0 chr12 26045020 26045320 -117741135 - AluSx SINE Alu -9 303 1 183 42 0 0 chr12 26046468 26046492 -117739963 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 417 239 26 8 chr12 26047586 26047703 -117738752 + MER103 DNA DNA 3 121 -45 1086 189 41 19 chr12 26047996 26048266 -117738189 - L1MA10 LINE L1 -133 6201 5926 970 122 0 6 chr12 26048371 26048527 -117737928 + L1P LINE L1 4110 4264 -1882 1868 216 39 14 chr12 26048980 26049420 -117737035 - MER82 DNA MER2_type 0 653 203 467 178 9 19 chr12 26049713 26049820 -117736635 - MER82 DNA MER2_type -449 204 99 411 253 117 26 chr12 26049970 26050124 -117736331 - MIR SINE MIR -21 241 74 191 281 62 31 chr12 26050662 26050726 -117735729 + MIR SINE MIR 34 99 -163 2377 77 3 3 chr12 26051140 26051439 -117735016 + AluY SINE Alu 1 299 -12 2184 100 0 14 chr12 26052165 26052505 -117733950 + AluSq SINE Alu 1 336 0 1137 196 104 14 chr12 26053036 26053316 -117733139 - MER54B LTR ERVL -3 790 486 768 144 8 16 chr12 26054541 26054666 -117731789 - FLAM_C SINE Alu -7 126 3 350 272 106 7 chr12 26054736 26054872 -117731583 - MIR SINE MIR -66 196 49 223 232 36 0 chr12 26055103 26055159 -117731296 + L2 LINE L2 2356 2413 -901 21 89 0 0 chr12 26055375 26055431 -117731024 + AT_rich Low_complexity Low_complexity 1 56 0 1311 202 143 12 chr12 26057182 26057603 -117728852 - L1ME3A LINE L1 -8 6162 5687 359 312 19 80 chr12 26057623 26057934 -117728521 + L2 LINE L2 2613 2904 -410 214 317 73 0 chr12 26058091 26058173 -117728282 + L2 LINE L2 3179 3266 -6 28 29 0 0 chr12 26058479 26058514 -117727941 + AT_rich Low_complexity Low_complexity 1 35 0 310 258 67 0 chr12 26059517 26059606 -117726849 + L1MC4 LINE L1 6609 6703 -1339 359 266 179 59 chr12 26059639 26060080 -117726375 - L1M2 LINE L1 -5738 1111 595 24 100 0 0 chr12 26060549 26060629 -117725826 + GC_rich Low_complexity Low_complexity 1 80 0 335 225 153 27 chr12 26061823 26061934 -117724521 - L2 LINE L2 -3 3310 3186 725 275 74 85 chr12 26062084 26062602 -117723853 + L2 LINE L2 2841 3312 -1 183 100 100 0 chr12 26062701 26062731 -117723724 - L2 LINE L2 -21 3251 3219 393 267 112 17 chr12 26063221 26063337 -117723118 + L2 LINE L2 3137 3263 -9 222 296 121 8 chr12 26063336 26063468 -117722987 + L2 LINE L2 2543 2689 -625 * 2126 100 3 32 chr12 26063478 26063789 -117722666 - AluSg SINE Alu -8 302 1 311 232 0 0 chr12 26064028 26064097 -117722358 + L2 LINE L2 2987 3055 -217 804 274 29 29 chr12 26064621 26064898 -117721557 - MER102a DNA MER1_type -22 308 32 339 287 0 23 chr12 26065566 26065653 -117720802 + L2 LINE L2 3225 3309 -4 605 180 18 9 chr12 26067206 26067317 -117719138 + MER5A DNA MER1_type 1 112 -77 2299 80 0 17 chr12 26068104 26068404 -117718051 + AluY SINE Alu 1 295 -16 432 0 0 0 chr12 26070639 26070687 -117715768 + (TG)n Simple_repeat Simple_repeat 2 49 0 404 226 52 26 chr12 26071990 26072105 -117714350 - MER97a DNA MER1_type? -718 176 59 2013 108 25 51 chr12 26072355 26072670 -117713785 - AluSx SINE Alu -5 307 1 21 0 0 0 chr12 26072714 26072735 -117713720 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr12 26072821 26072880 -117713575 + AT_rich Low_complexity Low_complexity 1 59 0 261 97 35 44 chr12 26073314 26073427 -117713028 + (TA)n Simple_repeat Simple_repeat 1 112 0 247 223 58 8 chr12 26073427 26073548 -117712907 + (TTATA)n Simple_repeat Simple_repeat 5 131 0 296 165 44 11 chr12 26073663 26073754 -117712701 + (TA)n Simple_repeat Simple_repeat 1 94 0 219 152 24 42 chr12 26073762 26073927 -117712528 + (TATAA)n Simple_repeat Simple_repeat 5 166 0 1353 96 101 0 chr12 26074774 26074983 -117711472 - MER30 DNA MER1_type 0 230 1 392 319 48 18 chr12 26075351 26075517 -117710938 - MIR SINE MIR -81 181 11 239 224 0 0 chr12 26075554 26075603 -117710852 - Charlie8 DNA MER1_type -1930 487 439 837 215 47 6 chr12 26078316 26078488 -117707967 + MER58A DNA MER1_type 19 197 -27 24 53 0 0 chr12 26079245 26079283 -117707172 + AT_rich Low_complexity Low_complexity 1 38 0 234 171 0 0 chr12 26081560 26081595 -117704860 + L2 LINE L2 3264 3298 -15 3335 205 101 18 chr12 26081934 26082578 -117703877 - L1MB8 LINE L1 -6 6172 5583 2182 109 0 0 chr12 26082578 26082861 -117703594 + AluSx SINE Alu 17 299 -13 3335 205 101 18 chr12 26082861 26083379 -117703076 - L1MB8 LINE L1 -595 5583 4918 * 3589 220 58 20 chr12 26083374 26083717 -117702738 - L1MB8 LINE L1 -1617 4529 4201 2431 56 0 20 chr12 26083717 26084022 -117702433 - AluY SINE Alu -12 299 1 3589 220 58 20 chr12 26084022 26084329 -117702126 - L1MB8 LINE L1 -1945 4201 3907 2274 82 0 10 chr12 26084329 26084623 -117701832 - AluY SINE Alu -20 291 1 3589 220 58 20 chr12 26084623 26084967 -117701488 - L1MB8 LINE L1 -2239 3907 3496 778 188 0 0 chr12 26084997 26085130 -117701325 + FLAM_C SINE Alu 1 133 -10 5395 207 106 36 chr12 26085632 26086250 -117700205 - L1M4c LINE L1 -4621 2517 1944 2220 80 10 29 chr12 26086250 26086561 -117699894 + AluSp SINE Alu 1 305 -8 5395 207 106 36 chr12 26086561 26087872 -117698583 - L1M4c LINE L1 -5194 1944 309 679 186 0 0 chr12 26087872 26087985 -117698470 - MSTC LTR MaLR -315 113 1 940 217 42 0 chr12 26087985 26088197 -117698258 - L1M4c LINE L1 -6636 223 3 483 319 69 5 chr12 26088321 26088525 -117697930 - MIR SINE MIR -26 236 20 22 56 0 0 chr12 26088613 26088649 -117697806 + AT_rich Low_complexity Low_complexity 1 36 0 916 257 134 42 chr12 26088857 26089261 -117697194 - MLT1D LTR MaLR 0 505 65 26 30 0 0 chr12 26089554 26089587 -117696868 + AT_rich Low_complexity Low_complexity 1 33 0 465 34 0 0 chr12 26089673 26089732 -117696723 + (CA)n Simple_repeat Simple_repeat 2 60 0 243 289 57 31 chr12 26089843 26090002 -117696453 + MARNA DNA Mariner 20 182 -404 30 59 0 0 chr12 26090908 26090959 -117695496 + AT_rich Low_complexity Low_complexity 1 51 0 1038 210 114 80 chr12 26091380 26092024 -117694431 + LTR41 LTR ERVL 19 761 -12 24 0 0 0 chr12 26092154 26092178 -117694277 + AT_rich Low_complexity Low_complexity 1 24 0 219 173 19 0 chr12 26093047 26093099 -117693356 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 1974 138 7 10 chr12 26094074 26094372 -117692083 - AluJb SINE Alu -15 297 1 323 354 76 0 chr12 26094914 26095058 -117691397 + MER117 DNA MER1_type 1 155 -42 21 0 0 0 chr12 26095643 26095664 -117690791 + AT_rich Low_complexity Low_complexity 1 21 0 1921 147 20 3 chr12 26096320 26096620 -117689835 + AluJo SINE Alu 1 305 -7 897 267 50 8 chr12 26096978 26097218 -117689237 - MIR SINE MIR -11 251 2 192 255 21 0 chr12 26097261 26097308 -117689147 - L2 LINE L2 -9 3263 3216 1717 156 37 71 chr12 26097397 26097775 -117688680 - MLT1A1 LTR MaLR 0 365 1 271 290 111 31 chr12 26098763 26098925 -117687530 - MER96 DNA MER1_type? 0 175 1 1363 239 239 4 chr12 26099243 26099779 -117686676 + L2 LINE L2 1554 2215 -1099 701 229 16 33 chr12 26099779 26099962 -117686493 - MER20B DNA MER1_type -602 181 2 216 207 0 103 chr12 26100276 26100334 -117686121 + MIR SINE MIR 19 70 -138 2214 91 7 0 chr12 26101013 26101300 -117685155 - AluY SINE Alu -19 292 4 201 323 141 21 chr12 26101596 26101788 -117684667 + L2 LINE L2 2877 3091 -181 2149 115 42 76 chr12 26102015 26102425 -117684030 + MSTB1 LTR MaLR 34 429 -3 542 223 18 0 chr12 26102585 26102697 -117683758 - MER94 DNA DNA 0 134 21 248 239 80 106 chr12 26102839 26103027 -117683428 - MIR SINE MIR -48 214 32 216 0 0 0 chr12 26104106 26104130 -117682325 + (CA)n Simple_repeat Simple_repeat 2 25 0 691 203 0 0 chr12 26104290 26104413 -117682042 - FLAM_C SINE Alu -10 133 11 2066 121 57 6 chr12 26104560 26104892 -117681563 + Tigger2 DNA MER2_type 2370 2718 0 2039 151 0 0 chr12 26105101 26105400 -117681055 - AluJb SINE Alu -13 299 1 27 29 0 0 chr12 26105503 26105537 -117680918 + AT_rich Low_complexity Low_complexity 1 34 0 1681 151 0 0 chr12 26105892 26106177 -117680278 + L1 LINE L1 3704 3988 -2158 543 188 51 0 chr12 26106176 26106293 -117680162 + L1 LINE L1 4878 5000 -1146 * 1072 151 5 0 chr12 26106368 26106553 -117679902 + L1 LINE L1 3991 4176 -1970 1776 104 4 8 chr12 26106561 26106801 -117679654 - AluSg SINE Alu -71 239 1 2217 123 3 0 chr12 26106835 26107144 -117679311 - AluSq SINE Alu -3 310 1 4282 126 58 15 chr12 26107185 26107922 -117678533 + Tigger3b DNA MER2_type 1 769 -462 26 30 0 0 chr12 26107946 26107979 -117678476 + AT_rich Low_complexity Low_complexity 1 33 0 719 156 0 16 chr12 26107980 26108102 -117678353 + FLAM_A SINE Alu 20 139 -3 1161 139 27 5 chr12 26108130 26108317 -117678138 + AluJb SINE Alu 120 310 -2 2586 141 34 5 chr12 26108317 26108764 -117677691 + Tigger3b DNA MER2_type 772 1231 0 21 82 0 0 chr12 26108777 26108826 -117677629 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr12 26108883 26108907 -117677548 + AT_rich Low_complexity Low_complexity 1 24 0 898 165 136 23 chr12 26109653 26109829 -117676626 - AluJb SINE Alu -116 196 1 229 281 195 8 chr12 26110176 26110304 -117676151 + L2 LINE L2 3143 3294 -19 2179 98 10 0 chr12 26110649 26110945 -117675510 + AluSq SINE Alu 2 300 -13 213 94 0 0 chr12 26111806 26111838 -117674617 + (CA)n Simple_repeat Simple_repeat 2 33 0 475 259 0 0 chr12 26114874 26114986 -117671469 - L2 LINE L2 -5 3308 3197 1963 103 75 0 chr12 26115117 26115398 -117671057 - AluSc SINE Alu -7 302 1 462 315 50 22 chr12 26115800 26115981 -117670474 - MIR3 SINE MIR -2 206 21 37 23 0 0 chr12 26116168 26116212 -117670243 + AT_rich Low_complexity Low_complexity 1 44 0 225 255 0 0 chr12 26116393 26116440 -117670015 + (CA)n Simple_repeat Simple_repeat 1 47 0 1586 156 132 12 chr12 26116977 26117303 -117669152 + MLT1A1 LTR MaLR 1 365 0 317 324 214 0 chr12 26117447 26117592 -117668863 - MER5A DNA MER1_type 0 189 14 2251 110 0 0 chr12 26117667 26117967 -117668488 + AluSc SINE Alu 3 302 -7 1221 114 0 0 chr12 26117971 26118129 -117668326 + AluSp SINE Alu 130 287 -26 25 65 0 0 chr12 26118139 26118185 -117668270 + AT_rich Low_complexity Low_complexity 1 46 0 199 405 42 0 chr12 26118220 26118388 -117668067 + L2 LINE L2 2194 2368 -946 276 392 0 0 chr12 26118509 26118606 -117667849 - MIR SINE MIR -59 149 53 342 283 0 0 chr12 26119390 26119482 -117666973 + L1MC4a LINE L1 6503 6594 -1214 479 308 37 71 chr12 26119493 26119847 -117666608 - L1MEc LINE L1 -6018 378 37 825 175 18 102 chr12 26119850 26120182 -117666273 + L1MC4 LINE L1 7732 8035 -7 295 185 0 0 chr12 26120200 26120254 -117666201 + MLT1D LTR MaLR 72 125 -442 796 156 6 78 chr12 26120256 26120436 -117666019 + L1MD3 LINE L1 7410 7576 -419 2395 88 0 0 chr12 26120441 26120738 -117665717 + AluSx SINE Alu 1 297 -15 524 188 4 195 chr12 26121036 26121292 -117665163 + MLT1D LTR MaLR 254 460 -45 712 267 48 0 chr12 26121376 26121582 -117664873 - L2 LINE L2 -266 3047 2832 211 269 129 54 chr12 26122491 26122584 -117663871 + L2 LINE L2 3169 3268 -4 1469 200 33 33 chr12 26123286 26123651 -117662804 - MLT1A1 LTR MaLR 0 365 1 446 243 64 17 chr12 26124032 26124173 -117662282 + MIR SINE MIR 33 182 -26 342 289 84 30 chr12 26124257 26124423 -117662032 + MIR SINE MIR 23 197 -65 206 194 0 32 chr12 26124890 26124952 -117661503 + T-rich Low_complexity Low_complexity 2 61 0 289 280 13 0 chr12 26125192 26125267 -117661188 + MIR3 SINE MIR 132 207 -1 225 0 0 0 chr12 26125370 26125395 -117661060 + (T)n Simple_repeat Simple_repeat 1 25 0 301 260 110 50 chr12 26125697 26125797 -117660658 - L2 LINE L2 0 3272 3167 2066 124 3 13 chr12 26125841 26126156 -117660299 + AluSx SINE Alu 1 312 0 569 235 46 0 chr12 26126691 26126864 -117659591 + L1MCa LINE L1 1731 2025 -4532 1488 208 139 41 chr12 26127022 26127059 -117659396 - MLT2B1 LTR ERVL -2 518 486 526 71 24 0 chr12 26127059 26127143 -117659312 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 1488 208 139 41 chr12 26127143 26127572 -117658883 - MLT2B1 LTR ERVL -34 486 6 414 0 0 0 chr12 26127795 26127841 -117658614 + (TTA)n Simple_repeat Simple_repeat 2 47 0 3494 186 84 56 chr12 26128510 26129487 -117656968 + MER45B DNA AcHobo 2 1005 -35 344 261 52 52 chr12 26129807 26129960 -117656495 - MIR3 SINE MIR -25 183 31 198 269 0 75 chr12 26130282 26130349 -117656106 - L3 LINE CR1 -1 1576 1515 28 79 0 0 chr12 26130594 26130657 -117655798 + AT_rich Low_complexity Low_complexity 1 63 0 287 158 287 40 chr12 26132884 26132985 -117653470 - MIR SINE MIR -132 130 5 246 300 12 0 chr12 26135312 26135392 -117651063 + MER20B DNA MER1_type 3 83 -700 2213 140 64 21 chr12 26135433 26135868 -117650587 + L1M2 LINE L1 5296 5749 -542 312 342 187 0 chr12 26136017 26136172 -117650283 - MIR SINE MIR -1 261 78 592 170 104 130 chr12 26136962 26137164 -117649291 - MER20B DNA MER1_type -3 780 585 208 70 47 0 chr12 26137164 26137207 -117649248 + (TA)n Simple_repeat Simple_repeat 2 46 0 592 170 104 130 chr12 26137207 26137274 -117649181 - MER20B DNA MER1_type -198 585 518 553 298 28 9 chr12 26137367 26137585 -117648870 - MER20B DNA MER1_type -267 516 295 843 198 45 0 chr12 26137597 26137754 -117648701 + AluJb SINE Alu 145 308 -4 248 289 0 40 chr12 26137807 26137883 -117648572 - MER20B DNA MER1_type -596 187 115 1596 127 50 65 chr12 26137913 26138331 -117648124 - L1MA7 LINE L1 -6 6285 5874 693 131 29 52 chr12 26138667 26138832 -117647623 + THE1C LTR MaLR 201 350 -25 1478 115 3 90 chr12 26138856 26139186 -117647269 - MER4A LTR ERV1 -42 622 263 2319 96 0 3 chr12 26139212 26139514 -117646941 + AluSx SINE Alu 10 310 -2 342 261 0 43 chr12 26139674 26139862 -117646593 + T-rich Low_complexity Low_complexity 1 180 0 342 227 113 18 chr12 26140937 26141091 -117645364 + AluSq/x SINE Alu 2 105 -198 21 0 0 0 chr12 26143591 26143612 -117642843 + AT_rich Low_complexity Low_complexity 1 21 0 502 272 83 12 chr12 26145429 26145598 -117640857 - MIR SINE MIR -71 191 11 242 258 175 31 chr12 26145613 26145710 -117640745 + L2 LINE L2 3203 3313 0 1621 224 131 17 chr12 26146032 26146452 -117640003 + MLT1F LTR MaLR 3 470 -72 24 0 0 0 chr12 26147407 26147431 -117639024 + AT_rich Low_complexity Low_complexity 1 24 0 347 292 64 17 chr12 26147862 26147996 -117638459 - MIR SINE MIR -62 146 38 2281 103 0 34 chr12 26149721 26150041 -117636414 + AluSg SINE Alu 1 309 -1 2214 72 14 0 chr12 26150648 26150924 -117635531 + AluSp SINE Alu 1 280 -33 249 57 0 0 chr12 26150928 26150963 -117635492 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 325 256 122 0 chr12 26151480 26151562 -117634893 + MIR SINE MIR 54 145 -63 618 258 72 19 chr12 26151860 26152069 -117634386 - MIR SINE MIR -29 233 14 199 328 172 0 chr12 26152170 26152298 -117634157 + MIR SINE MIR 107 256 -6 509 266 28 0 chr12 26152873 26152982 -117633473 - L3 LINE CR1 -422 1155 1044 1955 139 0 4 chr12 26153240 26153521 -117632934 + AluSc SINE Alu 1 280 -29 1468 178 3 60 chr12 26153521 26153819 -117632636 + AluJo SINE Alu 20 300 -12 329 267 62 54 chr12 26154265 26154505 -117631950 - MER112 DNA MER1_type -2 258 17 457 295 134 55 chr12 26154507 26155452 -117631003 - L1MEd LINE L1 -5096 1023 4 596 309 96 11 chr12 26155474 26155756 -117630699 - L3 LINE CR1 -635 942 637 2237 155 42 39 chr12 26156282 26156740 -117629715 + LTR32 LTR ERVL 13 471 0 742 230 119 25 chr12 26158136 26158371 -117628084 + MIR SINE MIR 2 258 -4 193 272 86 95 chr12 26158431 26158663 -117627792 + L2 LINE L2 1878 2107 -1207 181 274 36 95 chr12 26158872 26158956 -117627499 - L3 LINE CR1 -505 1072 994 2627 137 42 148 chr12 26161078 26161787 -117624668 - MER51A LTR ERV1 0 634 1 331 331 92 48 chr12 26162567 26162839 -117623616 + L2 LINE L2 2832 3115 -157 2046 174 25 8 chr12 26163941 26164298 -117622157 - MLT1A1 LTR MaLR -2 363 1 329 305 6 85 chr12 26164366 26164530 -117621925 - MIR SINE MIR -74 134 25 783 148 0 0 chr12 26164712 26164834 -117621621 + FRAM SINE Alu 37 158 -18 507 198 83 56 chr12 26164835 26165001 -117621454 + L1ME3A LINE L1 5806 5973 -197 352 267 67 29 chr12 26165232 26165442 -117621013 - L1ME4a LINE L1 -206 5915 5698 22 35 0 0 chr12 26165489 26165518 -117620937 + AT_rich Low_complexity Low_complexity 1 29 0 200 94 0 31 chr12 26166280 26166312 -117620143 + (TTTTC)n Simple_repeat Simple_repeat 1 31 0 212 319 217 13 chr12 26167251 26167408 -117619047 - L2 LINE L2 -572 2742 2554 499 227 108 49 chr12 26168215 26168418 -117618037 + L2 LINE L2 2490 2704 -610 718 233 119 10 chr12 26168452 26168654 -117617801 - MIR SINE MIR -27 235 12 946 288 88 15 chr12 26168668 26169182 -117617273 + L2 LINE L2 2713 3251 -62 2302 88 0 10 chr12 26169239 26169522 -117616933 + AluSx SINE Alu 1 302 -10 198 33 33 0 chr12 26169522 26169552 -117616903 + (TAAA)n Simple_repeat Simple_repeat 2 156 0 2302 88 0 10 chr12 26169552 26169563 -117616892 + AluSx SINE Alu 302 312 0 367 299 159 19 chr12 26169567 26169838 -117616617 - L2 LINE L2 -1293 2021 1713 2465 171 61 2 chr12 26170815 26171375 -117615080 + L1ME1 LINE L1 4849 5437 -729 409 176 12 26 chr12 26171376 26171632 -117614823 + AluJo SINE Alu 1 302 0 2590 221 54 26 chr12 26171660 26172231 -117614224 + L1ME1 LINE L1 5460 6055 -111 1920 134 34 0 chr12 26172231 26172523 -117613932 + AluSx SINE Alu 5 306 -6 2590 221 54 26 chr12 26172523 26172634 -117613821 + L1ME1 LINE L1 6055 6161 -5 2348 80 3 0 chr12 26172643 26172929 -117613526 + AluY SINE Alu 1 287 -24 25 0 0 0 chr12 26172929 26172954 -117613501 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr12 26174883 26174905 -117611550 + AT_rich Low_complexity Low_complexity 1 22 0 825 167 8 0 chr12 26175156 26175288 -117611167 + FLAM_A SINE Alu 1 133 0 209 115 58 58 chr12 26175310 26175362 -117611093 - L2 LINE L2 0 3313 3262 331 270 138 5 chr12 26176145 26176334 -117610121 - MIR SINE MIR -12 250 37 44 106 0 0 chr12 26178744 26178914 -117607541 + GC_rich Low_complexity Low_complexity 1 170 0 205 250 22 22 chr12 26179045 26179137 -117607318 + (CGGGG)n Simple_repeat Simple_repeat 2 93 0 245 49 73 0 chr12 26179204 26179245 -117607210 + (CCGGG)n Simple_repeat Simple_repeat 3 46 0 25 31 0 0 chr12 26179296 26179328 -117607127 + GC_rich Low_complexity Low_complexity 1 32 0 26 50 0 0 chr12 26179350 26179390 -117607065 + GC_rich Low_complexity Low_complexity 1 40 0 189 258 263 5 chr12 26180552 26180738 -117605717 + L2 LINE L2 1776 2009 -1305 2487 72 7 0 chr12 26180745 26181051 -117605404 + AluSp SINE Alu 1 308 -5 927 163 112 86 chr12 26181800 26182033 -117604422 - MLT1D LTR MaLR -63 442 204 1649 187 142 3 chr12 26182422 26182796 -117603659 + MSTB LTR MaLR 1 426 0 2291 170 21 0 chr12 26183202 26183590 -117602865 + MER57A LTR ERV1 8 403 0 3741 195 11 71 chr12 26183590 26184113 -117602342 + MER57A-int LTR ERV1 1 450 -7087 2208 96 3 0 chr12 26184113 26184425 -117602030 + AluSq SINE Alu 1 313 0 3741 195 11 71 chr12 26184425 26184803 -117601652 + MER57A-int LTR ERV1 450 849 -6688 1635 161 69 11 chr12 26184839 26185113 -117601342 + AluJo SINE Alu 9 298 -14 2251 123 0 19 chr12 26185193 26185509 -117600946 + AluSg SINE Alu 1 310 0 492 277 0 21 chr12 26185516 26185657 -117600798 + MER57A-int LTR ERV1 851 988 -4135 715 220 136 44 chr12 26185657 26185907 -117600548 + MER34C LTR ERV1 155 427 -158 2650 57 0 0 chr12 26185962 26186278 -117600177 + AluYb8 SINE Alu 1 316 -2 270 171 61 37 chr12 26186282 26186364 -117600091 + MER57A-int LTR ERV1 1110 1193 -3678 * 345 215 0 56 chr12 26186339 26186446 -117600009 + MER57A-int LTR ERV1 1299 1399 -3724 2293 198 62 101 chr12 26186526 26187248 -117599207 + LTR8A LTR ERV1 34 727 0 954 162 27 194 chr12 26187273 26187368 -117599087 + MER31-int LTR ERV1 3141 3250 -3081 1106 178 50 157 chr12 26187368 26187577 -117598878 - AluJo SINE Alu 0 302 141 243 0 0 0 chr12 26187577 26187604 -117598851 + (TA)n Simple_repeat Simple_repeat 2 28 0 1106 178 50 157 chr12 26187604 26187732 -117598723 - AluJo SINE Alu -161 141 1 954 162 27 194 chr12 26187732 26187807 -117598648 + MER31-int LTR ERV1 3250 3336 -2995 1979 137 22 0 chr12 26187807 26188119 -117598336 - AluSq SINE Alu 0 318 1 954 162 27 194 chr12 26188119 26188322 -117598133 + MER31-int LTR ERV1 3336 3453 -2878 480 246 53 19 chr12 26188435 26188642 -117597813 + MER31-int LTR ERV1 1709 1922 -3014 1897 149 14 3 chr12 26188694 26188983 -117597472 + AluJb SINE Alu 1 292 -20 296 203 16 0 chr12 26188992 26189056 -117597399 + MER31-int LTR ERV1 2023 2087 -3036 2224 106 0 3 chr12 26189132 26189425 -117597030 + AluSx SINE Alu 1 292 -20 3253 153 23 74 chr12 26189491 26190273 -117596182 + MER31-int LTR ERV1 3687 4428 -1903 1556 159 10 42 chr12 26190274 26190563 -117595892 + AluJo SINE Alu 1 280 -32 216 0 0 0 chr12 26190675 26190699 -117595756 + (GGAA)n Simple_repeat Simple_repeat 4 27 0 2117 129 0 16 chr12 26190734 26191045 -117595410 + AluSx SINE Alu 1 306 -6 2014 131 30 0 chr12 26191390 26191687 -117594768 + AluSx SINE Alu 1 306 -6 987 152 5 71 chr12 26192276 26192349 -117594106 + MER5A DNA MER1_type 2 78 -111 850 156 0 30 chr12 26192349 26192484 -117593971 + FLAM_C SINE Alu 2 132 -1 987 152 5 71 chr12 26192484 26192608 -117593847 + MER5A DNA MER1_type 78 186 -3 1860 155 0 17 chr12 26192809 26193106 -117593349 - AluSx SINE Alu -20 292 1 1337 219 4 15 chr12 26193106 26193376 -117593079 + AluJo SINE Alu 17 283 -29 576 208 7 115 chr12 26194047 26194316 -117592139 + AluJb SINE Alu 41 280 -32 4220 173 46 22 chr12 26194347 26195178 -117591277 + MER31-int LTR ERV1 4971 5821 -1716 4261 186 7 26 chr12 26195481 26196196 -117590259 + MER31-int LTR ERV1 5825 6525 -1012 2288 118 3 0 chr12 26196196 26196502 -117589953 + AluSx SINE Alu 1 307 -5 4261 186 7 26 chr12 26196502 26196599 -117589856 + MER31-int LTR ERV1 6525 6622 -915 276 158 0 0 chr12 26196599 26196637 -117589818 - Alu SINE Alu -265 38 1 21 0 0 0 chr12 26197565 26197586 -117588869 + AT_rich Low_complexity Low_complexity 1 21 0 607 261 43 53 chr12 26198105 26198293 -117588162 - LTR16A1 LTR ERVL 0 457 272 2549 138 19 33 chr12 26198294 26198720 -117587735 + MSTB1 LTR MaLR 1 420 -12 412 143 0 2 chr12 26198739 26198812 -117587643 + MSTB1 LTR MaLR 325 432 0 476 200 116 10 chr12 26198812 26199046 -117587409 - LTR16A1 LTR ERVL -182 275 1 42 0 0 0 chr12 26199709 26199751 -117586704 + AT_rich Low_complexity Low_complexity 1 42 0 915 166 0 0 chr12 26199768 26199907 -117586548 - AluJo SINE Alu -173 139 1 204 40 0 0 chr12 26200292 26200317 -117586138 + (T)n Simple_repeat Simple_repeat 1 25 0 269 292 45 0 chr12 26200714 26200803 -117585652 + MIR SINE MIR 37 129 -133 877 181 18 23 chr12 26200823 26200994 -117585461 - MSTB LTR MaLR -54 372 203 2311 92 0 0 chr12 26200994 26201287 -117585168 + AluY SINE Alu 1 293 -18 209 182 18 0 chr12 26201287 26201342 -117585113 + GA-rich Low_complexity Low_complexity 3 58 0 187 241 152 0 chr12 26201392 26201471 -117584984 + MIR SINE MIR 142 232 -30 983 227 14 5 chr12 26201570 26201777 -117584678 - MIR SINE MIR -27 235 27 205 280 11 32 chr12 26203722 26203815 -117582640 + MIR SINE MIR 100 190 -72 397 271 40 53 chr12 26204615 26204766 -117581689 - MIR3 SINE MIR -5 203 55 2583 72 0 0 chr12 26206259 26206564 -117579891 + AluSc SINE Alu 1 305 -4 1333 191 92 0 chr12 26206574 26206846 -117579609 + AluJb SINE Alu 1 297 -5 2246 133 128 10 chr12 26207213 26207596 -117578859 - MSTA LTR MaLR 0 428 1 821 264 75 45 chr12 26207655 26208080 -117578375 + MLT1J1 LTR MaLR 8 445 -1 772 174 0 43 chr12 26209690 26209814 -117576641 + AluJo SINE Alu 1 120 -182 423 0 0 0 chr12 26209814 26209861 -117576594 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 772 174 0 43 chr12 26209861 26209874 -117576581 + AluJo SINE Alu 120 132 -170 631 183 98 20 chr12 26209940 26210093 -117576362 + MER58B DNA MER1_type 1 165 -176 908 114 0 15 chr12 26210093 26210225 -117576230 + AluJo SINE Alu 1 130 -172 308 226 32 43 chr12 26210226 26210319 -117576136 + MER58B DNA MER1_type 116 333 -8 1597 196 0 46 chr12 26211335 26211661 -117574794 + AluSx SINE Alu 2 312 0 557 211 68 23 chr12 26211743 26211876 -117574579 + AluJo SINE Alu 118 256 -56 1638 195 3 13 chr12 26213283 26213596 -117572859 - AluJo SINE Alu -2 310 1 2123 129 0 13 chr12 26213941 26214251 -117572204 - AluSx SINE Alu -6 306 1 315 0 0 0 chr12 26214286 26214321 -117572134 + (TTCC)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr12 26214343 26214365 -117572090 + GC_rich Low_complexity Low_complexity 1 22 0 487 354 0 0 chr12 26214439 26214614 -117571841 + G-rich Low_complexity Low_complexity 1 175 0 361 290 57 85 chr12 26214741 26214989 -117571466 + MLT1J LTR MaLR 224 464 -47 2068 138 7 0 chr12 26215180 26215485 -117570970 - AluSq SINE Alu -4 309 3 300 168 0 16 chr12 26215752 26215973 -117570482 + AluJo SINE Alu 2 281 -21 200 238 0 0 chr12 26215973 26216015 -117570440 + T-rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr12 26216051 26216075 -117570380 + AT_rich Low_complexity Low_complexity 1 24 0 2015 140 3 0 chr12 26216197 26216483 -117569972 + AluSx SINE Alu 1 287 -25 238 0 53 26 chr12 26216486 26216524 -117569931 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 230 156 0 0 chr12 26217004 26217049 -117569406 + A-rich Low_complexity Low_complexity 1 45 0 2355 90 0 13 chr12 26217178 26217489 -117568966 - AluY SINE Alu -3 308 2 367 293 120 0 chr12 26218264 26218431 -117568024 + MIR SINE MIR 64 250 -12 223 175 0 0 chr12 26218511 26218551 -117567904 + GA-rich Low_complexity Low_complexity 1 40 0 1322 142 0 47 chr12 26219074 26219307 -117567148 - AluJo SINE Alu -6 306 85 749 283 124 41 chr12 26219380 26219695 -117566760 + LTR16A LTR ERVL 117 450 0 913 256 24 24 chr12 26219837 26220083 -117566372 + MIR SINE MIR 16 261 -1 815 253 0 0 chr12 26220702 26220876 -117565579 - AluJb SINE Alu -3 309 136 2244 115 0 0 chr12 26221100 26221395 -117565060 - AluSx SINE Alu -17 295 1 1626 157 26 11 chr12 26222224 26222519 -117563936 + AluJo SINE Alu 11 309 0 2109 100 11 4 chr12 26222728 26223050 -117563405 + AluSx SINE Alu 1 324 0 267 321 60 0 chr12 26223198 26223282 -117563173 + MIR3 SINE MIR 15 103 -105 372 312 166 39 chr12 26223427 26223764 -117562691 + L3 LINE CR1 1196 1575 -2 2096 142 3 0 chr12 26224156 26224466 -117561989 - AluSq SINE Alu -1 312 2 1838 116 93 0 chr12 26224481 26224763 -117561692 - AluSx SINE Alu 0 306 1 1952 127 7 3 chr12 26224796 26225087 -117561368 - AluSx SINE Alu -20 292 1 235 170 19 0 chr12 26225264 26225317 -117561138 + (TAAA)n Simple_repeat Simple_repeat 4 57 0 2171 156 55 0 chr12 26226102 26226726 -117559729 - L1MC4 LINE L1 -570 7318 6500 1227 172 72 63 chr12 26226726 26226957 -117559498 - MER33 DNA MER1_type -2263 322 86 2117 136 0 0 chr12 26226957 26227258 -117559197 + AluSx SINE Alu 1 301 -11 1227 172 72 63 chr12 26227258 26227345 -117559110 - MER33 DNA MER1_type -2499 86 1 2171 156 55 0 chr12 26227345 26227486 -117558969 - L1MC4 LINE L1 -1388 6500 6369 1843 224 33 58 chr12 26227504 26228053 -117558402 - L1ME2 LINE L1 -24 6140 5606 342 367 32 68 chr12 26228262 26228522 -117557933 + L2 LINE L2 2965 3214 -58 2312 101 7 0 chr12 26228522 26228830 -117557625 - AluSp SINE Alu -2 311 2 342 367 32 68 chr12 26228830 26228880 -117557575 + L2 LINE L2 3214 3264 -8 183 306 20 0 chr12 26228888 26228937 -117557518 - MIR SINE MIR -94 114 65 1706 195 0 19 chr12 26229396 26229714 -117556741 + AluJo SINE Alu 1 312 0 33 25 0 0 chr12 26230543 26230583 -117555872 + AT_rich Low_complexity Low_complexity 1 40 0 279 180 0 0 chr12 26230680 26230730 -117555725 + AluSx SINE Alu 83 132 -170 2183 107 0 7 chr12 26230733 26231022 -117555433 + AluSx SINE Alu 1 287 -25 1210 148 0 0 chr12 26231047 26231230 -117555225 + AluSx SINE Alu 127 309 -3 1775 147 3 52 chr12 26231880 26232187 -117554268 - AluJb SINE Alu -20 292 1 233 172 71 81 chr12 26232272 26232371 -117554084 - L1MC5 LINE L1 -209 7752 7655 2149 96 13 13 chr12 26232582 26232885 -117553570 + AluSx SINE Alu 1 303 -9 1547 177 70 27 chr12 26233386 26233513 -117552942 + L1M4 LINE L1 2804 2924 -3222 6265 121 4 9 chr12 26233513 26234070 -117552385 + L1PA13 LINE L1 4736 5294 -869 1983 150 6 13 chr12 26234070 26234383 -117552072 + AluSx SINE Alu 1 311 -1 6265 121 4 9 chr12 26234383 26235250 -117551205 + L1PA13 LINE L1 5294 6163 0 1547 177 70 27 chr12 26235250 26235535 -117550920 + L1M4 LINE L1 2924 3234 -2912 883 249 21 45 chr12 26235782 26236071 -117550384 + AluSq SINE Alu 29 310 -3 5736 128 2 9 chr12 26236072 26236939 -117549516 + L1PA13 LINE L1 5303 6163 0 1016 209 46 139 chr12 26236933 26237234 -117549221 + L1M4 LINE L1 2920 3166 -2980 * 228 32 0 0 chr12 26237234 26237265 -117549190 + Alu SINE Alu 267 297 -5 1016 209 46 139 chr12 26237265 26237565 -117548890 + L1M4 LINE L1 3166 3492 -2654 1975 160 16 0 chr12 26238131 26238438 -117548017 + AluSx SINE Alu 1 312 0 1672 189 14 0 chr12 26240079 26240375 -117546080 + AluJo SINE Alu 1 300 -12 2525 50 3 3 chr12 26240377 26240677 -117545778 + AluY SINE Alu 1 300 -11 183 257 193 18 chr12 26240867 26240976 -117545479 + MIR SINE MIR 27 154 -108 550 273 0 8 chr12 26241454 26241575 -117544880 + MIR3 SINE MIR 83 202 -6 2272 123 0 0 chr12 26241746 26242055 -117544400 + AluSx SINE Alu 1 309 -3 897 260 24 24 chr12 26242674 26242920 -117543535 - MIR SINE MIR -1 261 16 734 286 63 32 chr12 26243062 26243377 -117543078 - LTR16A LTR ERVL 0 450 117 1318 142 0 47 chr12 26243450 26243683 -117542772 + AluJo SINE Alu 85 306 -6 223 175 0 0 chr12 26244205 26244245 -117542210 + CT-rich Low_complexity Low_complexity 1 40 0 417 312 129 0 chr12 26244325 26244511 -117541944 - MIR SINE MIR -12 250 41 2435 88 0 3 chr12 26245267 26245574 -117540881 + AluY SINE Alu 2 307 -4 214 178 0 0 chr12 26245703 26245748 -117540707 + T-rich Low_complexity Low_complexity 1 45 0 238 0 53 26 chr12 26246228 26246266 -117540189 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1990 136 3 3 chr12 26246269 26246556 -117539899 - AluSx SINE Alu -25 287 1 24 0 0 0 chr12 26246678 26246702 -117539753 + AT_rich Low_complexity Low_complexity 1 24 0 287 182 0 0 chr12 26246777 26246821 -117539634 - AluJo SINE Alu -21 281 238 1011 171 0 17 chr12 26246822 26246998 -117539457 - AluJo SINE Alu -138 174 2 2106 128 7 0 chr12 26247265 26247570 -117538885 + AluSq SINE Alu 3 309 -4 577 264 94 99 chr12 26247761 26248227 -117538228 - MLT1J LTR MaLR -47 464 1 1935 152 9 25 chr12 26249110 26249426 -117537029 + AluSx SINE Alu 2 312 0 2028 134 3 0 chr12 26250115 26250405 -117536050 + AluSx SINE Alu 1 291 -21 2373 210 60 75 chr12 26250460 26251165 -117535290 - LTR8A LTR ERV1 0 727 34 24 32 0 0 chr12 26251202 26251233 -117535222 + AT_rich Low_complexity Low_complexity 1 31 0 2256 111 7 0 chr12 26251233 26251539 -117534916 + AluSp SINE Alu 2 309 -4 464 319 147 33 chr12 26251772 26252317 -117534138 + L2 LINE L2 738 1344 -1970 456 353 107 35 chr12 26252393 26252994 -117533461 + L2 LINE L2 2243 2886 -428 581 323 97 66 chr12 26253351 26253380 -117533075 + L2 LINE L2 1745 1772 -1542 1944 158 0 10 chr12 26253380 26253690 -117532765 - AluJb SINE Alu -5 307 1 581 323 97 66 chr12 26253690 26254300 -117532155 + L2 LINE L2 1772 2404 -910 835 179 0 15 chr12 26254330 26254464 -117531991 - FLAM_C SINE Alu -1 132 1 319 143 0 0 chr12 26254511 26254560 -117531895 - HSMAR2 DNA Mariner -426 876 828 272 158 0 0 chr12 26255463 26255501 -117530954 + Alu SINE Alu 1 38 -265 540 149 0 32 chr12 26255501 26255595 -117530860 - MER57-int LTR ERV1 -915 6622 6532 2219 118 7 0 chr12 26255598 26255902 -117530553 - AluSx SINE Alu -6 306 1 270 152 71 81 chr12 26255987 26256086 -117530369 - L1MC5 LINE L1 -209 7752 7655 2139 99 13 13 chr12 26256297 26256600 -117529855 + AluSx SINE Alu 1 303 -9 701 146 51 13 chr12 26257101 26257259 -117529196 + L1M4 LINE L1 2804 2967 -3179 * 3014 171 16 2 chr12 26257228 26257784 -117528671 + L1P LINE L1 4736 5299 -847 448 259 0 0 chr12 26257785 26257870 -117528585 + AluS SINE Alu 2 86 -227 2489 146 7 34 chr12 26258109 26258554 -117527901 - MER41B LTR ERV1 -202 433 1 4963 211 30 11 chr12 26259613 26260662 -117525793 + L1PBa LINE L1 374 1442 -5421 226 293 0 0 chr12 26261416 26261474 -117524981 - MIR SINE MIR -122 140 83 275 230 90 40 chr12 26261536 26261636 -117524819 + MER46C DNA MER2_type 2 106 -232 1914 140 11 3 chr12 26261637 26261922 -117524533 + AluSx SINE Alu 1 287 -25 1744 178 21 0 chr12 26261967 26262248 -117524207 + AluJb SINE Alu 11 297 -15 317 333 14 27 chr12 26262425 26262572 -117523883 + L1MDa LINE L1 273 417 -6123 26 30 0 0 chr12 26262774 26262807 -117523648 + GC_rich Low_complexity Low_complexity 1 33 0 222 62 0 0 chr12 26263076 26263108 -117523347 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 1713 113 73 0 chr12 26263111 26263358 -117523097 - AluSq SINE Alu -48 265 1 305 243 19 29 chr12 26263494 26263597 -117522858 - MLT1L LTR MaLR -22 593 492 442 20 0 0 chr12 26264198 26264248 -117522207 - AluY SINE Alu -259 51 2 370 314 32 8 chr12 26265002 26265126 -117521329 - MIR SINE MIR -118 144 18 287 389 16 0 chr12 26265757 26265883 -117520572 + L2 LINE L2 3145 3272 0 2095 123 7 0 chr12 26265900 26266200 -117520255 + AluSg SINE Alu 1 302 -8 264 167 0 0 chr12 26266520 26266568 -117519887 - MIR SINE MIR -130 132 85 692 261 173 15 chr12 26267226 26267555 -117518900 + LTR50 LTR ERVL 95 475 -320 41 78 0 0 chr12 26268279 26268369 -117518086 + AT_rich Low_complexity Low_complexity 1 90 0 507 304 34 21 chr12 26269417 26269450 -117517005 + L1MC/D LINE L1 5566 5597 -577 270 0 0 0 chr12 26269450 26269480 -117516975 + (GA)n Simple_repeat Simple_repeat 2 31 0 507 304 34 21 chr12 26269480 26269721 -117516734 + L1MC/D LINE L1 5597 5849 -325 229 356 14 0 chr12 26269772 26269845 -117516610 - L2 LINE L2 -1 3312 3239 517 263 29 35 chr12 26270317 26270488 -117515967 + MER5B DNA MER1_type 2 171 -7 322 314 170 13 chr12 26270623 26270776 -117515679 + MIR SINE MIR 13 189 -73 702 247 28 6 chr12 26271107 26271289 -117515166 + L2 LINE L2 1399 1584 -1730 297 225 0 28 chr12 26271570 26271641 -117514814 + MIR SINE MIR 73 141 -121 964 179 49 62 chr12 26271692 26271959 -117514496 - L1ME1 LINE L1 -7 6159 5899 2406 126 78 0 chr12 26271959 26272357 -117514098 - L1MD1 LINE L1 -13 6229 5801 202 162 353 0 chr12 26272367 26272435 -117514020 + MIR SINE MIR 171 262 0 574 249 140 31 chr12 26272457 26272577 -117513878 + L2 LINE L2 3021 3127 -186 281 26 26 0 chr12 26272577 26272615 -117513840 + (TG)n Simple_repeat Simple_repeat 2 40 0 574 249 140 31 chr12 26272615 26272751 -117513704 + L2 LINE L2 3127 3305 -8 22 35 0 0 chr12 26272813 26272842 -117513613 + AT_rich Low_complexity Low_complexity 1 29 0 1853 148 3 38 chr12 26272937 26273254 -117513201 + AluJb SINE Alu 1 306 -6 188 277 0 0 chr12 26273267 26273314 -117513141 - L3b LINE CR1 -435 1148 1102 2135 155 21 13 chr12 26273587 26273974 -117512481 + MLT1B LTR MaLR 1 390 0 195 354 106 21 chr12 26274264 26274501 -117511954 - L2 LINE L2 -1052 2262 2006 298 241 126 45 chr12 26274563 26274762 -117511693 + L2 LINE L2 1892 2106 -1208 200 271 68 0 chr12 26275028 26275087 -117511368 - L2 LINE L2 -1 3312 3250 1699 218 70 23 chr12 26275456 26275938 -117510517 - MLT1D LTR MaLR 0 505 1 25 0 0 0 chr12 26275971 26275996 -117510459 + AT_rich Low_complexity Low_complexity 1 25 0 333 0 0 0 chr12 26276368 26276405 -117510050 + (TG)n Simple_repeat Simple_repeat 1 37 0 241 383 63 34 chr12 26277807 26278157 -117508298 + L2 LINE L2 2330 2689 -625 37878 68 8 6 chr12 26278225 26284357 -117502098 + L1PA3 LINE L1 11 6155 0 1198 274 63 11 chr12 26284359 26284979 -117501476 + L1M4 LINE L1 3077 3728 -2418 3879 213 59 17 chr12 26285154 26287015 -117499440 - L1 LINE L1 -2937 4628 2686 819 104 6 73 chr12 26287018 26287182 -117499273 - L1 LINE L1 -5160 1405 1253 207 332 153 31 chr12 26288870 26289093 -117497362 + MIR SINE MIR 13 262 0 350 244 173 0 chr12 26290099 26290226 -117496229 - MIR SINE MIR -4 258 110 28 0 0 0 chr12 26291175 26291203 -117495252 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 26292476 26292497 -117493958 + AT_rich Low_complexity Low_complexity 1 21 0 1784 174 6 13 chr12 26293001 26293312 -117493143 - AluJo SINE Alu -3 309 1 1911 50 50 4 chr12 26293957 26294196 -117492259 + AluY SINE Alu 1 250 -61 180 0 0 0 chr12 26294202 26294222 -117492233 + (A)n Simple_repeat Simple_repeat 1 20 0 211 308 183 19 chr12 26295273 26295377 -117491078 + MIR SINE MIR 21 141 -67 1046 276 43 50 chr12 26296167 26296402 -117490053 + MER20B DNA MER1_type 2 234 -549 2124 120 3 10 chr12 26296402 26296702 -117489753 + AluSx SINE Alu 1 298 -14 1046 276 43 50 chr12 26296702 26296929 -117489526 + MER20B DNA MER1_type 234 461 -322 897 219 87 20 chr12 26297052 26297399 -117489056 + L1MC5 LINE L1 7509 7878 -83 2255 119 3 0 chr12 26297586 26297888 -117488567 - AluSx SINE Alu -4 308 6 457 312 56 0 chr12 26297914 26298039 -117488416 - MIR SINE MIR -82 180 49 2216 158 40 12 chr12 26299735 26300182 -117486273 - L1 LINE L1 -2826 4739 4275 2509 109 19 6 chr12 26300182 26300541 -117485914 - THE1B LTR MaLR 0 364 1 2216 158 40 12 chr12 26300541 26300592 -117485863 - L1 LINE L1 -3290 4275 4227 9834 56 12 1 chr12 26300674 26302694 -117483761 - L1PA5 LINE L1 -8 6146 4113 22192 85 11 5 chr12 26302694 26305896 -117480559 - L1PA5 LINE L1 -2925 3221 1 2073 117 0 0 chr12 26305904 26306178 -117480277 - AluSg SINE Alu -36 274 1 6960 140 38 9 chr12 26306178 26307961 -117478494 - L1 LINE L1 -3325 4240 2402 1596 103 4 0 chr12 26307959 26308201 -117478254 - L1P5 LINE L1 -373 5778 5536 * 642 308 53 19 chr12 26309057 26309106 -117477349 - MIR SINE MIR -44 218 172 2399 172 24 5 chr12 26309106 26309524 -117476931 + MSTB LTR MaLR 1 426 0 9156 174 13 14 chr12 26309524 26311176 -117475279 + MSTB-int LTR MaLR 1 1651 0 2131 171 83 13 chr12 26311176 26311574 -117474881 + MSTB LTR MaLR 1 426 0 642 308 53 19 chr12 26311574 26311730 -117474725 - MIR SINE MIR -89 173 4 203 355 40 105 chr12 26311744 26312048 -117474407 - L2 LINE L2 -22 3250 2967 181 281 16 31 chr12 26312077 26312141 -117474314 - L2 LINE L2 0 3313 3251 706 203 8 0 chr12 26312609 26312742 -117473713 + MER45A DNA AcHobo 1 134 -44 2256 99 0 0 chr12 26312961 26313284 -117473171 - AluY SINE Alu 0 323 1 1940 155 0 7 chr12 26313297 26313593 -117472862 - AluSx SINE Alu -18 294 1 329 328 40 8 chr12 26313665 26313790 -117472665 + MIR SINE MIR 29 157 -105 312 164 0 0 chr12 26314380 26314447 -117472008 + CT-rich Low_complexity Low_complexity 4 70 0 219 247 210 0 chr12 26316069 26316150 -117470305 + MIR SINE MIR 121 218 -44 393 345 24 0 chr12 26316872 26317040 -117469415 + L1MEd LINE L1 442 613 -5506 433 175 21 21 chr12 26317058 26317155 -117469300 - HsTC2 DNA Tc2 -1793 105 9 10887 43 7 1 chr12 26317311 26319433 -117467022 - L1PA5 LINE L1 -1 6153 4026 4662 108 96 22 chr12 26321130 26321625 -117464830 - HSMAR2 DNA Mariner -420 882 301 1894 179 0 3 chr12 26321625 26321922 -117464533 + AluJo SINE Alu 4 299 -13 4662 108 96 22 chr12 26321922 26322246 -117464209 - HSMAR2 DNA Mariner -1001 301 2 1601 182 4 8 chr12 26322740 26323004 -117463451 + AluJb SINE Alu 1 263 -49 1728 158 158 60 chr12 26323017 26323516 -117462939 - LTR10A LTR ERV1 -61 548 1 192 77 0 0 chr12 26323540 26323566 -117462889 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 2789 188 35 23 chr12 26323721 26324328 -117462127 + MER6 DNA MER2_type 20 633 -232 2690 90 83 11 chr12 26324386 26324781 -117461674 + MER4C LTR ERV1 1 431 -34 875 19 0 0 chr12 26324781 26324885 -117461570 - L1PA3 LINE L1 0 6155 6052 2690 90 83 11 chr12 26324885 26324923 -117461532 + MER4C LTR ERV1 431 465 0 457 79 13 0 chr12 26324929 26325005 -117461450 + MER6 DNA MER2_type 659 735 -130 1203 204 65 38 chr12 26325106 26325567 -117460888 + LTR29 LTR ERV1 137 644 0 885 106 30 0 chr12 26325567 26325698 -117460757 + MER6 DNA MER2_type 731 865 0 4541 127 53 21 chr12 26326686 26327441 -117459014 - MER4E LTR ERV1 0 779 1 1373 153 0 44 chr12 26327555 26327784 -117458671 + AluJo SINE Alu 92 310 -2 1729 130 82 4 chr12 26328309 26328578 -117457877 - AluSx SINE Alu -22 290 1 5198 202 122 9 chr12 26328727 26329977 -117456478 - MER52A LTR ERV1 0 1755 365 294 182 15 0 chr12 26330500 26330566 -117455889 - MER52A LTR ERV1 -1688 67 1 3744 133 19 25 chr12 26330639 26331278 -117455177 - MER41B LTR ERV1 0 635 1 832 193 87 14 chr12 26331983 26332256 -117454199 - LTR49 LTR ERV1 0 607 313 * 1165 160 143 16 chr12 26332253 26332497 -117453958 - LTR29 LTR ERV1 -347 275 1 2348 100 7 0 chr12 26332926 26333236 -117453219 + AluSx SINE Alu 1 312 0 2163 110 31 0 chr12 26333272 26333562 -117452893 - AluSx SINE Alu -13 299 1 2277 114 0 7 chr12 26333824 26334131 -117452324 + AluSx SINE Alu 1 305 -7 23 0 0 0 chr12 26334137 26334160 -117452295 + AT_rich Low_complexity Low_complexity 1 23 0 201 129 0 0 chr12 26334197 26334228 -117452227 + (CAGTT)n Simple_repeat Simple_repeat 5 35 0 1998 224 13 47 chr12 26334768 26335220 -117451235 - LTR40a LTR ERVL 0 519 86 2326 82 0 3 chr12 26335220 26335523 -117450932 + AluY SINE Alu 1 302 -9 1998 224 13 47 chr12 26335523 26335607 -117450848 - LTR40a LTR ERVL -433 86 1 181 365 128 15 chr12 26335675 26335802 -117450653 - L2 LINE L2 -695 2619 2508 695 202 161 16 chr12 26335802 26335995 -117450460 - MER58A DNA MER1_type 0 224 4 181 365 128 15 chr12 26335995 26336070 -117450385 - L2 LINE L2 -806 2508 2394 862 132 0 0 chr12 26336144 26336265 -117450190 + FLAM_C SINE Alu 1 121 -22 259 24 24 24 chr12 26336265 26336306 -117450149 + (TAA)n Simple_repeat Simple_repeat 2 42 0 447 362 19 10 chr12 26336339 26336546 -117449909 - L2 LINE L2 -1001 2313 2105 189 0 0 0 chr12 26336593 26336614 -117449841 + (TG)n Simple_repeat Simple_repeat 2 22 0 245 234 91 39 chr12 26336967 26337044 -117449411 - L2 LINE L2 -6 3266 3186 22 70 0 0 chr12 26337495 26337538 -117448917 + AT_rich Low_complexity Low_complexity 1 43 0 3122 118 114 7 chr12 26337657 26338208 -117448247 + MER4B LTR ERV1 1 610 0 210 254 0 0 chr12 26339754 26339821 -117446634 + CT-rich Low_complexity Low_complexity 2 68 0 620 269 11 119 chr12 26340885 26341031 -117445424 + MIR SINE MIR 8 110 -152 1689 187 4 0 chr12 26341031 26341309 -117445146 + AluJo SINE Alu 1 279 -33 620 269 11 119 chr12 26341309 26341448 -117445007 + MIR SINE MIR 110 262 0 21 36 0 0 chr12 26341984 26342012 -117444443 + AT_rich Low_complexity Low_complexity 1 28 0 1725 157 6 118 chr12 26342252 26342486 -117443969 - L1MB8 LINE L1 0 6178 5920 1209 145 19 199 chr12 26342486 26342852 -117443603 - AluSq SINE Alu -13 300 1 1725 157 6 118 chr12 26342852 26342945 -117443510 - L1MB8 LINE L1 -258 5920 5923 2956 29 0 0 chr12 26342945 26343295 -117443160 - L1PA4 LINE L1 -3 6152 5803 1725 157 6 118 chr12 26343295 26343468 -117442987 - L1MB8 LINE L1 -254 5924 5733 1264 129 62 129 chr12 26343472 26343648 -117442807 - AluJb SINE Alu -9 303 157 273 57 0 0 chr12 26343648 26343683 -117442772 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1264 129 62 129 chr12 26343683 26343831 -117442624 - AluJb SINE Alu -155 157 1 2310 102 0 9 chr12 26343857 26344172 -117442283 + AluSq SINE Alu 1 312 -1 227 140 0 0 chr12 26344187 26344237 -117442218 - L1MB8 LINE L1 -830 5316 5267 2668 183 37 20 chr12 26344278 26344876 -117441579 - L1MB8 LINE L1 -878 5268 4682 456 19 0 0 chr12 26344876 26344929 -117441526 + (TA)n Simple_repeat Simple_repeat 1 53 0 1793 155 3 3 chr12 26344929 26345213 -117441242 - AluSx SINE Alu -28 284 1 2668 183 37 20 chr12 26345213 26345258 -117441197 - L1MB8 LINE L1 -1463 4683 4613 1752 221 74 11 chr12 26345322 26345864 -117440591 - L1MB8 LINE L1 -1943 4203 3628 6226 205 89 61 chr12 26345890 26346511 -117439944 - L1MDa LINE L1 -4339 2201 1599 1606 194 0 7 chr12 26346511 26346799 -117439656 + AluJb SINE Alu 9 294 -18 6226 205 89 61 chr12 26346799 26348248 -117438207 - L1MDa LINE L1 -4941 1599 74 1789 188 20 0 chr12 26348249 26348542 -117437913 - AluJb SINE Alu -13 299 1 1918 148 0 0 chr12 26348577 26348861 -117437594 - AluJb SINE Alu -25 287 4 335 296 62 23 chr12 26348909 26349085 -117437370 - L1ME LINE L1 -379 5742 5560 478 233 167 6 chr12 26349282 26349462 -117436993 - MIR SINE MIR 0 262 54 2380 107 0 0 chr12 26350874 26351184 -117435271 - AluSx SINE Alu 0 312 3 552 335 77 11 chr12 26351923 26352299 -117434156 + L1MC/D LINE L1 5380 5780 -2028 317 206 0 0 chr12 26352342 26352410 -117434045 + MER94 DNA DNA 4 71 -63 928 235 111 37 chr12 26353284 26353853 -117432602 - L2 LINE L2 0 3313 2688 212 301 32 32 chr12 26354165 26354258 -117432197 + L2 LINE L2 2572 2664 -650 262 385 195 5 chr12 26354593 26354793 -117431662 + L2 LINE L2 2985 3222 -50 224 298 96 11 chr12 26355377 26355471 -117430984 - L2 LINE L2 -1 3312 3211 21 0 0 0 chr12 26355817 26355838 -117430617 + AT_rich Low_complexity Low_complexity 1 21 0 305 358 78 36 chr12 26356560 26356895 -117429560 + L2 LINE L2 2168 2516 -798 2179 142 0 0 chr12 26356904 26357213 -117429242 - AluSx SINE Alu -3 309 1 2557 54 0 16 chr12 26357263 26357579 -117428876 - AluY SINE Alu 0 311 1 889 208 6 0 chr12 26357630 26357798 -117428657 - FRAM SINE Alu -8 168 1 2105 93 14 0 chr12 26357924 26358241 -117428214 - AluSx SINE Alu 0 321 1 1490 123 110 72 chr12 26359605 26359897 -117426558 + AluSq SINE Alu 1 303 -10 1268 155 21 0 chr12 26360159 26360379 -117426076 + AluJo SINE Alu 86 309 0 2439 148 13 0 chr12 26360446 26360844 -117425611 - MER57A LTR ERV1 0 403 1 233 296 52 87 chr12 26361597 26361712 -117424743 + L2 LINE L2 3154 3264 -8 368 271 42 42 chr12 26362319 26362485 -117423970 + L2 LINE L2 3143 3308 -5 1900 142 0 14 chr12 26362675 26362971 -117423484 + AluJb SINE Alu 19 310 -2 28 0 0 0 chr12 26362971 26362999 -117423456 + AT_rich Low_complexity Low_complexity 1 28 0 645 214 71 18 chr12 26363450 26363618 -117422837 + MER5B DNA MER1_type 1 177 -1 1833 155 0 20 chr12 26363922 26364226 -117422229 - AluJo SINE Alu -14 298 1 352 362 28 11 chr12 26364231 26364408 -117422047 + L3b LINE CR1 1355 1534 -49 472 258 45 67 chr12 26364755 26364933 -117421522 - MIR SINE MIR -81 181 8 213 264 0 0 chr12 26365409 26365481 -117420974 + (TA)n Simple_repeat Simple_repeat 2 73 0 1959 144 20 7 chr12 26365517 26365823 -117420632 - AluSx SINE Alu -2 310 1 1791 158 14 4 chr12 26366778 26367101 -117419354 - AluJb SINE Alu 0 326 1 2288 98 3 0 chr12 26367237 26367534 -117418921 + AluSp SINE Alu 1 298 -15 1079 302 45 36 chr12 26367702 26368284 -117418171 + MLT1K LTR MaLR 2 588 0 1597 176 50 4 chr12 26368388 26368666 -117417789 + AluJo SINE Alu 1 291 -21 230 236 124 67 chr12 26368738 26368827 -117417628 - MIR3 SINE MIR -6 202 109 29 0 0 0 chr12 26369177 26369206 -117417249 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr12 26370210 26370245 -117416210 + AT_rich Low_complexity Low_complexity 1 35 0 2305 109 0 13 chr12 26371562 26371873 -117414582 + AluSx SINE Alu 1 307 -5 251 262 0 0 chr12 26371966 26372027 -117414428 + MER96 DNA MER1_type? 1 61 -114 21 57 0 0 chr12 26372102 26372137 -117414318 + AT_rich Low_complexity Low_complexity 1 35 0 2247 117 0 3 chr12 26372274 26372573 -117413882 - AluSx SINE Alu -14 298 1 239 147 120 27 chr12 26372580 26372655 -117413800 + Zaphod DNA AcHobo 3802 3883 -148 * 515 238 8 16 chr12 26372651 26372773 -117413682 - MER21B LTR ERV1 -414 449 329 320 266 67 14 chr12 26372773 26372915 -117413540 - L1MC/D LINE L1 -379 5791 5679 860 160 7 0 chr12 26373011 26373161 -117413294 + MER3 DNA MER1_type 2 152 -57 1863 130 3 52 chr12 26373791 26374098 -117412357 - AluJb SINE Alu -10 302 11 998 235 65 9 chr12 26374222 26374452 -117412003 - MIR SINE MIR 0 262 20 473 250 88 14 chr12 26376437 26376585 -117409870 + MIR SINE MIR 47 205 -57 216 220 17 0 chr12 26377092 26377151 -117409304 + (TA)n Simple_repeat Simple_repeat 1 60 0 338 291 27 6 chr12 26377160 26377316 -117409139 - L1ME3A LINE L1 -50 6112 5961 669 312 66 41 chr12 26377690 26377929 -117408526 - L1MEd LINE L1 -3985 2578 2324 691 193 0 30 chr12 26377929 26378064 -117408391 - FLAM_C SINE Alu -2 131 1 669 312 66 41 chr12 26378064 26378218 -117408237 - L1MEd LINE L1 -4239 2324 2175 454 265 104 25 chr12 26378266 26378780 -117407675 - L1MEd LINE L1 -4701 1683 1136 258 217 58 0 chr12 26378791 26378860 -117407595 - L1MEd LINE L1 -5193 1179 1107 298 234 162 9 chr12 26379197 26379308 -117407147 + MIR SINE MIR 135 262 0 495 358 6 6 chr12 26379310 26379472 -117406983 + MIR3 SINE MIR 34 195 -13 335 274 21 0 chr12 26380935 26381030 -117405425 + MIR SINE MIR 64 160 -102 245 362 63 35 chr12 26382020 26382335 -117404120 - L2 LINE L2 -661 2653 2330 224 138 64 11 chr12 26383038 26383132 -117403323 + (TA)n Simple_repeat Simple_repeat 1 99 0 1740 185 7 10 chr12 26383142 26383440 -117403015 + AluJo SINE Alu 1 297 -15 21 57 0 0 chr12 26383456 26383491 -117402964 + AT_rich Low_complexity Low_complexity 1 35 0 300 324 0 27 chr12 26383774 26383885 -117402570 - MIR SINE MIR -87 175 68 622 228 0 16 chr12 26384547 26384670 -117401785 - FLAM_A SINE Alu -12 121 1 187 260 80 0 chr12 26384685 26384735 -117401720 + MER5A DNA MER1_type 136 189 0 450 280 53 0 chr12 26384786 26384918 -117401537 + MIR SINE MIR 69 207 -55 232 339 80 9 chr12 26385547 26385659 -117400796 + MIR3 SINE MIR 87 206 -2 449 274 137 25 chr12 26385837 26386041 -117400414 - MIR SINE MIR -12 250 24 960 190 6 0 chr12 26386767 26386925 -117399530 - AluJb SINE Alu -17 295 137 1623 80 38 0 chr12 26388038 26388277 -117398178 + L1MA1 LINE L1 6055 6302 0 1349 80 0 60 chr12 26388497 26388698 -117397757 - AluSg/x SINE Alu 0 310 122 2174 204 39 0 chr12 26388825 26389286 -117397169 + MLT1E2 LTR MaLR 137 615 -11 2062 137 3 0 chr12 26390179 26390472 -117395983 + AluJo SINE Alu 2 295 -17 21 0 0 0 chr12 26391016 26391037 -117395418 + AT_rich Low_complexity Low_complexity 1 21 0 1946 114 63 23 chr12 26391127 26391426 -117395029 + AluSx SINE Alu 1 311 -1 202 324 0 0 chr12 26391460 26391526 -117394929 - MIR SINE MIR -77 131 88 2007 152 0 0 chr12 26392504 26392800 -117393655 + AluJb SINE Alu 1 296 -16 370 252 0 19 chr12 26396242 26396349 -117390106 - Charlie2a DNA MER1_type -10 2852 2748 799 193 67 33 chr12 26396355 26396625 -117389830 - Charlie2a DNA MER1_type -1850 1012 734 * 829 273 148 11 chr12 26396624 26396990 -117389465 - Charlie2a DNA MER1_type -2388 474 59 695 197 46 83 chr12 26397178 26397396 -117389059 + MER63A DNA MER1_type 1 210 0 1389 72 0 0 chr12 26397487 26397654 -117388801 - AluYa5 SINE Alu -12 299 133 23 0 0 0 chr12 26397699 26397722 -117388733 + AT_rich Low_complexity Low_complexity 1 23 0 314 167 0 0 chr12 26398048 26398096 -117388359 - LTR16C LTR ERVL -8 483 436 1704 61 22 13 chr12 26398098 26398329 -117388126 + L1PA7 LINE L1 5922 6154 0 21 0 0 0 chr12 26398335 26398356 -117388099 + AT_rich Low_complexity Low_complexity 1 21 0 2336 107 3 0 chr12 26398365 26398665 -117387790 + AluSc SINE Alu 1 301 -8 1072 291 53 28 chr12 26398665 26398950 -117387505 - LTR16C LTR ERVL -44 447 146 1753 177 26 7 chr12 26398950 26399255 -117387200 - AluJo SINE Alu -1 311 1 1072 291 53 28 chr12 26399255 26399402 -117387053 - LTR16C LTR ERVL -345 146 4 251 282 70 70 chr12 26399703 26399737 -117386718 + MER5A DNA MER1_type 43 76 -113 1990 159 3 0 chr12 26399737 26400038 -117386417 + AluJb SINE Alu 1 302 -10 251 282 70 70 chr12 26400038 26400145 -117386310 + MER5A DNA MER1_type 75 184 -5 29 60 0 0 chr12 26400346 26400396 -117386059 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr12 26400871 26400896 -117385559 + AT_rich Low_complexity Low_complexity 1 25 0 983 169 17 39 chr12 26400897 26401075 -117385380 - AluJb SINE Alu -17 295 122 59 15 0 0 chr12 26401075 26401141 -117385314 + AT_rich Low_complexity Low_complexity 1 66 0 1951 115 11 0 chr12 26401141 26401411 -117385044 - AluSq SINE Alu -40 273 1 204 382 182 18 chr12 26401831 26401996 -117384459 + L3b LINE CR1 1386 1577 -6 211 192 231 0 chr12 26403133 26403185 -117383270 - MIR SINE MIR -32 230 167 2373 199 18 26 chr12 26403186 26403759 -117382696 + L1MB5 LINE L1 5309 5876 -298 712 157 0 46 chr12 26403752 26403905 -117382550 - L1PA16 LINE L1 -325 5841 5696 * 1189 157 35 88 chr12 26403985 26404258 -117382197 + L1MB5 LINE L1 5873 6128 -46 1995 75 0 61 chr12 26404258 26404537 -117381918 - AluY SINE Alu -13 298 37 1189 157 35 88 chr12 26404537 26404582 -117381873 + L1MB5 LINE L1 6128 6174 0 200 295 66 0 chr12 26404692 26404753 -117381702 + MIR SINE MIR 198 262 0 194 351 0 0 chr12 26404815 26404872 -117381583 + L2 LINE L2 3208 3264 -8 2497 164 16 5 chr12 26405483 26405916 -117380539 - L1PA16 LINE L1 0 6166 5729 385 313 177 35 chr12 26406255 26406623 -117379832 + L2 LINE L2 2346 2765 -549 22 70 0 0 chr12 26408354 26408397 -117378058 + AT_rich Low_complexity Low_complexity 1 43 0 354 128 51 34 chr12 26411687 26411804 -117374651 + (TATATG)n Simple_repeat Simple_repeat 1 119 0 21 36 0 0 chr12 26412408 26412436 -117374019 + AT_rich Low_complexity Low_complexity 1 28 0 709 102 0 0 chr12 26413542 26413650 -117372805 + L1MB3 LINE L1 6075 6182 -1 790 252 109 53 chr12 26413842 26414556 -117371899 - L1ME3A LINE L1 -237 5933 5178 2543 23 7 3 chr12 26414776 26415075 -117371380 - AluY SINE Alu -11 300 1 365 286 211 0 chr12 26415240 26415439 -117371016 + MIR SINE MIR 21 261 -1 376 252 214 8 chr12 26417997 26418128 -117368327 + MER5A DNA MER1_type 26 183 -6 259 390 67 18 chr12 26419565 26419788 -117366667 + L2 LINE L2 1702 1935 -1379 21 57 0 0 chr12 26419935 26419970 -117366485 + AT_rich Low_complexity Low_complexity 1 35 0 3745 115 36 28 chr12 26420082 26420684 -117365771 + MER4B LTR ERV1 4 610 0 198 118 0 0 chr12 26420721 26420755 -117365700 + (GA)n Simple_repeat Simple_repeat 1 34 0 797 323 89 34 chr12 26421460 26422020 -117364435 + L2 LINE L2 2215 2805 -509 571 286 47 21 chr12 26422052 26422244 -117364211 - L2 LINE L2 -2 3311 3115 369 314 48 93 chr12 26422257 26422505 -117363950 + L2 LINE L2 3033 3269 -3 2478 51 0 13 chr12 26422799 26423111 -117363344 + AluY SINE Alu 1 308 -3 591 27 0 0 chr12 26423800 26423873 -117362582 + (TG)n Simple_repeat Simple_repeat 2 74 0 21 36 0 0 chr12 26425135 26425163 -117361292 + AT_rich Low_complexity Low_complexity 1 28 0 213 39 0 0 chr12 26425970 26425996 -117360459 + (GA)n Simple_repeat Simple_repeat 1 26 0 885 73 0 0 chr12 26425997 26426106 -117360349 - FLAM_C SINE Alu -32 111 3 344 233 14 0 chr12 26426137 26426210 -117360245 - MIR SINE MIR -115 147 74 188 294 0 20 chr12 26426765 26426816 -117359639 - MIR3 SINE MIR -7 201 152 646 272 78 94 chr12 26426818 26427252 -117359203 + Charlie8 DNA MER1_type 4 430 -1987 2062 142 0 3 chr12 26427280 26427583 -117358872 - AluSx SINE Alu -10 302 1 187 209 93 0 chr12 26427683 26427726 -117358729 + L2 LINE L2 3259 3305 -8 219 69 0 0 chr12 26428086 26428115 -117358340 + (TC)n Simple_repeat Simple_repeat 2 30 0 216 111 0 0 chr12 26428115 26428151 -117358304 + (CA)n Simple_repeat Simple_repeat 1 36 0 1484 201 18 4 chr12 26428630 26428909 -117357546 - AluJo SINE Alu -25 287 5 924 138 0 0 chr12 26428992 26429122 -117357333 + FLAM_C SINE Alu 1 130 -13 317 258 34 83 chr12 26429261 26429407 -117357048 + MIR SINE MIR 20 157 -63 943 238 59 4 chr12 26429418 26429674 -117356781 - LTR16A LTR ERVL 0 450 181 217 274 55 0 chr12 26429820 26429893 -117356562 + MIR SINE MIR 176 252 -10 531 333 36 0 chr12 26430828 26430993 -117355462 + MIR SINE MIR 21 191 -71 505 247 74 12 chr12 26431525 26431687 -117354768 - MER3 DNA MER1_type -84 125 1 1969 130 0 0 chr12 26431712 26431981 -117354474 - AluSx SINE Alu -41 271 3 615 293 17 6 chr12 26432007 26432181 -117354274 + MIR SINE MIR 77 252 -10 2175 131 0 3 chr12 26432375 26432688 -117353767 - AluSx SINE Alu 0 312 1 255 426 25 0 chr12 26432691 26432813 -117353642 + L2 LINE L2 3136 3260 -12 285 284 0 0 chr12 26434523 26434590 -117351865 - L2 LINE L2 -2 3311 3245 627 190 22 10 chr12 26435057 26435280 -117351175 + 7SK RNA RNA 1 188 -5 204 191 16 32 chr12 26435281 26435344 -117351111 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 1923 158 0 3 chr12 26435368 26435660 -117350795 - AluJo SINE Alu -21 291 1 253 200 62 0 chr12 26435988 26436068 -117350387 + (TA)n Simple_repeat Simple_repeat 2 86 0 644 213 82 39 chr12 26436999 26437206 -117349249 - MIR SINE MIR -3 259 44 322 206 112 47 chr12 26437289 26437396 -117349059 - MIR SINE MIR -147 115 2 2223 96 3 0 chr12 26439054 26439356 -117347099 + AluSp SINE Alu 1 303 0 207 0 0 0 chr12 26439393 26439416 -117347039 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2646 51 0 0 chr12 26440409 26440720 -117345735 - AluY SINE Alu 0 311 1 230 300 91 36 chr12 26440907 26441017 -117345438 - L2 LINE L2 0 3313 3198 1883 150 0 17 chr12 26441165 26441465 -117344990 + AluSx SINE Alu 1 295 -17 1750 119 128 16 chr12 26441507 26441826 -117344629 + MER47A DNA MER2_type 12 366 0 424 208 66 28 chr12 26442787 26442893 -117343562 - MER103 DNA DNA -44 122 13 1700 199 0 0 chr12 26442906 26443203 -117343252 - AluJb SINE Alu -15 297 1 348 271 62 62 chr12 26443313 26443435 -117343020 + MIR SINE MIR 83 207 -55 1633 144 0 115 chr12 26443435 26443774 -117342681 + AluJo SINE Alu 1 300 -2 348 271 62 62 chr12 26443774 26443828 -117342627 + MIR SINE MIR 206 259 -3 208 339 37 46 chr12 26443828 26443937 -117342518 - L3b LINE CR1 -180 1403 1296 1766 28 5 0 chr12 26444491 26444703 -117341752 - L1PA5 LINE L1 -2 6152 5940 268 240 117 76 chr12 26445010 26445181 -117341274 + MIR SINE MIR 85 262 0 1800 154 3 25 chr12 26445829 26446238 -117340217 + AluJo SINE Alu 1 402 0 1920 220 149 24 chr12 26447060 26447679 -117338776 + L1ME3A LINE L1 5470 6165 -5 273 300 70 0 chr12 26448346 26448446 -117338009 + MIR3 SINE MIR 94 200 -8 403 308 89 0 chr12 26448579 26448725 -117337730 - MIR3 SINE MIR -6 202 44 200 290 81 0 chr12 26450023 26450085 -117336370 - L2 LINE L2 0 3272 3206 5747 169 43 23 chr12 26450383 26450455 -117336000 + L1MC2 LINE L1 4533 4602 -1742 1943 144 17 0 chr12 26450455 26450746 -117335709 + AluSx SINE Alu 1 296 -16 5747 169 43 23 chr12 26450746 26452175 -117334280 + L1MC2 LINE L1 4602 6073 -271 1652 167 3 43 chr12 26452175 26452474 -117333981 - AluJo SINE Alu -11 301 15 5747 169 43 23 chr12 26452474 26452743 -117333712 + L1MC2 LINE L1 6073 6335 -9 878 150 8 0 chr12 26452893 26453026 -117333429 - AluJo SINE Alu -178 134 1 465 242 20 13 chr12 26453190 26453339 -117333116 - MER103 DNA DNA -16 150 1 567 246 45 61 chr12 26453468 26453732 -117332723 - L1ME1 LINE L1 -5 6230 5971 1184 260 67 23 chr12 26453732 26454078 -117332377 + MLT1A1 LTR MaLR 1 361 -4 2680 199 45 12 chr12 26454078 26454817 -117331638 - L1ME1 LINE L1 -256 5979 5210 282 235 27 94 chr12 26454834 26454983 -117331472 - L1ME1 LINE L1 -1163 5052 4914 5797 250 112 17 chr12 26455025 26455747 -117330708 - L1ME1 LINE L1 -3605 2610 1958 2352 84 0 3 chr12 26455747 26456046 -117330409 - AluSc SINE Alu -11 298 1 5797 250 112 17 chr12 26456046 26457722 -117328733 - L1ME1 LINE L1 -4257 1958 47 288 306 219 10 chr12 26457788 26457984 -117328471 - MIR SINE MIR -6 256 20 1758 163 6 45 chr12 26459609 26459922 -117326533 - AluJo SINE Alu -11 301 1 265 293 0 12 chr12 26460115 26460197 -117326258 + MIR SINE MIR 171 251 -11 276 241 0 51 chr12 26460934 26461013 -117325442 + (TCTCTG)n Simple_repeat Simple_repeat 4 78 0 356 210 241 25 chr12 26461040 26461202 -117325253 + L2 LINE L2 3098 3294 -19 496 228 92 43 chr12 26461965 26462149 -117324306 + MIR SINE MIR 60 252 -10 281 336 30 37 chr12 26463012 26463146 -117323309 + MIR3 SINE MIR 10 142 -66 246 348 177 6 chr12 26463400 26463558 -117322897 + MIR SINE MIR 21 205 -57 180 401 23 23 chr12 26463575 26463707 -117322748 + MIR3 SINE MIR 10 141 -67 37 39 0 0 chr12 26463858 26463909 -117322546 + AT_rich Low_complexity Low_complexity 1 51 0 1327 176 61 29 chr12 26463941 26464220 -117322235 + AluJo SINE Alu 3 290 -22 1335 244 115 26 chr12 26464399 26464932 -117321523 - L1ME3A LINE L1 -238 5932 5337 363 248 264 0 chr12 26465804 26465933 -117320522 + L1MC4a LINE L1 6441 6603 -1205 1357 223 225 17 chr12 26465976 26466823 -117319632 + L1MC4 LINE L1 6731 7710 -98 706 283 70 4 chr12 26467078 26467308 -117319147 + MIR SINE MIR 18 262 0 195 314 57 81 chr12 26468147 26468271 -117318184 - L3b LINE CR1 -273 1310 1190 492 18 0 0 chr12 26469569 26469626 -117316829 + (TG)n Simple_repeat Simple_repeat 2 58 0 1094 225 13 114 chr12 26471516 26471912 -117314543 + MLT1A1 LTR MaLR 10 365 0 440 294 75 32 chr12 26472170 26472220 -117314235 - MIR SINE MIR -53 209 163 1297 273 60 19 chr12 26472220 26472652 -117313803 - MLT1J2 LTR MaLR 0 450 1 440 294 75 32 chr12 26472652 26472788 -117313667 - MIR SINE MIR -99 163 15 2589 58 0 0 chr12 26472947 26473255 -117313200 - AluY SINE Alu -3 308 1 675 258 60 32 chr12 26473493 26473745 -117312710 + MIR SINE MIR 2 260 -2 895 309 80 19 chr12 26473818 26474093 -117312362 + L2 LINE L2 2402 2659 -655 3749 138 29 69 chr12 26474093 26474123 -117312332 - L1MA9 LINE L1 -1 6311 6281 230 0 33 0 chr12 26474123 26474153 -117312302 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1849 140 11 0 chr12 26474162 26474427 -117312028 + AluSx SINE Alu 1 268 -44 3749 138 29 69 chr12 26474427 26475186 -117311269 - L1MA9 LINE L1 -39 6273 5544 895 309 80 19 chr12 26475186 26475273 -117311182 + L2 LINE L2 2659 2786 -528 517 225 33 0 chr12 26475301 26475421 -117311034 - MER94 DNA DNA -10 124 1 756 301 137 12 chr12 26476054 26476290 -117310165 + L2 LINE L2 2808 3102 -211 2299 129 5 45 chr12 26476290 26476669 -117309786 + THE1B LTR MaLR 1 364 0 756 301 137 12 chr12 26476669 26476774 -117309681 + L2 LINE L2 3102 3192 -121 743 289 95 4 chr12 26476776 26477008 -117309447 - MIR SINE MIR -1 261 9 211 283 152 43 chr12 26477030 26477122 -117309333 + L2 LINE L2 3162 3263 -9 21 36 0 0 chr12 26478634 26478662 -117307793 + AT_rich Low_complexity Low_complexity 1 28 0 265 329 49 0 chr12 26479292 26479374 -117307081 - L2 LINE L2 -5 3308 3223 69 24 0 0 chr12 26479452 26479535 -117306920 + AT_rich Low_complexity Low_complexity 1 83 0 411 301 131 22 chr12 26479551 26479734 -117306721 - L2 LINE L2 -243 3070 2868 2586 111 58 0 chr12 26479912 26480328 -117306127 - MER75 DNA T2_type 0 514 75 260 241 0 0 chr12 26480533 26480591 -117305864 + L1M4b LINE L1 1129 1186 -5673 * 1585 268 50 24 chr12 26480578 26481260 -117305195 + L1M4b LINE L1 1780 2479 -4480 3330 243 94 17 chr12 26481468 26482113 -117304342 + L1M4b LINE L1 2537 3131 -3826 216 67 0 0 chr12 26482113 26482143 -117304312 + (TA)n Simple_repeat Simple_repeat 1 30 0 3330 243 94 17 chr12 26482143 26483083 -117303372 + L1M4b LINE L1 3131 4226 -2731 616 285 124 10 chr12 26483084 26483382 -117303073 - L2 LINE L2 -612 2702 2371 430 285 76 44 chr12 26483382 26483839 -117302616 + LTR33 LTR ERVL 1 519 -2 423 244 174 6 chr12 26483844 26484016 -117302439 - L2 LINE L2 -944 2370 2170 1720 256 164 26 chr12 26484020 26484705 -117301750 - L2 LINE L2 -1448 1866 1088 584 231 81 12 chr12 26484702 26484862 -117301593 + MIR SINE MIR 79 249 -13 * 248 209 0 0 chr12 26484830 26484873 -117301582 + L2 LINE L2 3222 3264 -8 * 312 277 67 0 chr12 26484911 26485030 -117301425 - L1 LINE L1 -1653 4493 4367 306 0 0 0 chr12 26485040 26485074 -117301381 + (TTA)n Simple_repeat Simple_repeat 3 36 0 7334 23 0 0 chr12 26485074 26485958 -117300497 - L1PA3 LINE L1 -18 6137 5254 2608 191 12 60 chr12 26486586 26486895 -117299560 - L1MDb LINE L1 -5259 1150 885 1884 75 90 36 chr12 26486895 26487174 -117299281 - AluSx SINE Alu -18 294 1 2608 191 12 60 chr12 26487174 26487502 -117298953 - L1MDb LINE L1 -5524 885 543 2188 79 0 0 chr12 26487515 26487830 -117298625 - AluY SINE Alu 0 315 1 24 0 0 0 chr12 26487873 26487897 -117298558 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 26487941 26487962 -117298493 + AT_rich Low_complexity Low_complexity 1 21 0 856 178 16 5 chr12 26488036 26488221 -117298234 - MER53 DNA DNA -2 187 1 296 269 274 20 chr12 26488748 26488949 -117297506 + MIR SINE MIR 2 253 -9 192 135 0 0 chr12 26489242 26489279 -117297176 + (TG)n Simple_repeat Simple_repeat 1 37 0 1724 160 7 14 chr12 26489415 26489708 -117296747 - AluJb SINE Alu -21 291 1 266 327 190 10 chr12 26489717 26489922 -117296533 + L3b LINE CR1 1102 1343 -240 762 273 26 22 chr12 26491093 26491360 -117295095 - MLT1J LTR MaLR -202 309 42 276 226 70 181 chr12 26491492 26491735 -117294720 - MIR SINE MIR -32 230 15 793 231 135 65 chr12 26492691 26493305 -117293150 - L1MC5 LINE L1 -44 7917 7261 314 242 26 64 chr12 26493350 26493854 -117292601 - L1MC4a LINE L1 -450 7358 6881 392 219 293 0 chr12 26493856 26494020 -117292435 - L1MC4a LINE L1 -1039 6769 6558 28 48 0 0 chr12 26494089 26494131 -117292324 + AT_rich Low_complexity Low_complexity 1 42 0 279 0 0 0 chr12 26494542 26494573 -117291882 + (TG)n Simple_repeat Simple_repeat 2 32 0 363 250 16 8 chr12 26494667 26494791 -117291664 - L1MC4a LINE L1 -1995 5813 5689 237 311 117 10 chr12 26495284 26495387 -117291068 - L2 LINE L2 -13 3300 3187 1307 166 32 14 chr12 26495851 26496153 -117290302 - MER61B LTR ERV1 -29 396 1 429 371 62 11 chr12 26496600 26496875 -117289580 + MLT1K LTR MaLR 2 290 -298 213 327 48 58 chr12 26497439 26497543 -117288912 + MIR3 SINE MIR 69 171 -37 214 292 226 30 chr12 26498001 26498169 -117288286 + L2 LINE L2 2419 2619 -695 368 320 36 89 chr12 26498386 26498667 -117287788 - L2 LINE L2 -10 3262 2997 588 118 0 0 chr12 26498833 26498918 -117287537 - AluS SINE Alu -228 85 1 886 231 208 23 chr12 26498923 26499270 -117287185 - L2 LINE L2 -14 3299 2889 2853 174 145 9 chr12 26500193 26501166 -117285289 + Charlie1a DNA MER1_type 14 1153 -302 1266 190 97 31 chr12 26501167 26501488 -117284967 - MLT2B1 LTR ERVL -178 342 1 778 212 54 70 chr12 26502164 26502304 -117284151 + MIR SINE MIR 6 151 -111 2301 98 10 0 chr12 26502304 26502611 -117283844 + AluSq SINE Alu 4 313 0 778 212 54 70 chr12 26502611 26502715 -117283740 + MIR SINE MIR 151 255 -7 2062 161 15 26 chr12 26503005 26503540 -117282915 + LTR10E LTR ERV1 1 590 -43 32 75 0 0 chr12 26504920 26504987 -117281468 + AT_rich Low_complexity Low_complexity 1 67 0 438 299 120 21 chr12 26505346 26505580 -117280875 + MIR SINE MIR 5 261 -1 474 18 0 0 chr12 26505933 26505988 -117280467 + (TG)n Simple_repeat Simple_repeat 2 56 0 1107 160 0 0 chr12 26506212 26506387 -117280068 - MSTA LTR MaLR 0 428 254 766 153 0 0 chr12 26506385 26506509 -117279946 - MSTA LTR MaLR -300 126 3 * 8594 165 28 5 chr12 26506543 26508071 -117278384 - MSTB-int LTR MaLR -86 1565 3 2651 136 7 14 chr12 26508082 26508502 -117277953 - MSTB LTR MaLR -9 417 1 610 316 5 21 chr12 26508569 26508759 -117277696 - MIR SINE MIR -74 188 2 2579 174 24 59 chr12 26508858 26509434 -117277021 - MER89 LTR ERV1 0 559 4 229 157 39 0 chr12 26509710 26509761 -117276694 + MLT2E LTR ERVL 35 87 -541 238 326 11 22 chr12 26509808 26509900 -117276555 + L2 LINE L2 3177 3267 -5 208 254 0 0 chr12 26509976 26510031 -117276424 + A-rich Low_complexity Low_complexity 2 56 0 368 352 28 0 chr12 26510184 26510329 -117276126 + L2 LINE L2 2525 2673 -641 1008 212 8 4 chr12 26510355 26510619 -117275836 + MER33 DNA MER1_type 60 324 0 190 333 0 0 chr12 26510634 26510691 -117275764 + L2 LINE L2 2690 2746 -568 1831 158 108 6 chr12 26510707 26511049 -117275406 + MSTA LTR MaLR 52 428 0 248 317 0 0 chr12 26511059 26511141 -117275314 - MIR3 SINE MIR -6 202 121 32 26 0 0 chr12 26511419 26511458 -117274997 + AT_rich Low_complexity Low_complexity 1 39 0 3271 249 77 46 chr12 26511500 26512686 -117273769 - L1MEc LINE L1 -4730 1666 518 2159 130 0 13 chr12 26512686 26513002 -117273453 - AluSq SINE Alu -1 312 1 3271 249 77 46 chr12 26513002 26513323 -117273132 - L1MEc LINE L1 -5878 518 105 1854 172 0 0 chr12 26513323 26513619 -117272836 - AluSx SINE Alu -5 307 12 3271 249 77 46 chr12 26513619 26513693 -117272762 - L1MEc LINE L1 -6291 105 35 29 0 0 0 chr12 26516004 26516033 -117270422 + AT_rich Low_complexity Low_complexity 1 29 0 1814 153 0 3 chr12 26516034 26516322 -117270133 - AluJb SINE Alu -25 287 1 915 313 58 12 chr12 26516338 26516770 -117269685 - LTR16B LTR ERVL -12 452 1 1366 189 134 22 chr12 26517715 26518074 -117268381 + MLT1D LTR MaLR 1 399 -106 197 313 16 0 chr12 26519571 26519635 -117266820 - L2 LINE L2 -4 3268 3204 216 0 0 0 chr12 26519635 26519659 -117266796 + (TAA)n Simple_repeat Simple_repeat 3 26 0 496 149 23 0 chr12 26519727 26519814 -117266641 - Tigger7 DNA MER2_type -3 2488 2400 436 160 245 0 chr12 26519813 26519919 -117266536 - Tigger7 DNA MER2_type -212 521 390 * 2235 168 10 5 chr12 26520169 26520561 -117265894 - Tigger7 DNA MER2_type -2093 394 1 478 273 25 66 chr12 26520561 26520759 -117265696 - MIR SINE MIR -64 198 9 546 223 198 0 chr12 26521300 26521351 -117265104 + MER5A DNA MER1_type 1 41 -148 2091 223 37 29 chr12 26521351 26521867 -117264588 + MLT2B1 LTR ERVL 1 520 0 546 223 198 0 chr12 26521867 26521972 -117264483 + MER5A DNA MER1_type 41 188 -1 198 281 11 79 chr12 26521893 26521982 -117264473 - MER5A DNA MER1_type -99 90 8 * 233 233 41 41 chr12 26522910 26522983 -117263472 - L2 LINE L2 0 3313 3241 220 307 31 71 chr12 26523108 26523153 -117263302 - MIR SINE MIR -12 250 205 2565 128 34 2 chr12 26523153 26523568 -117262887 - MSTA LTR MaLR 0 428 1 220 307 31 71 chr12 26523568 26523649 -117262806 - MIR SINE MIR -57 205 129 1936 158 20 18 chr12 26524334 26524676 -117261779 - MER2 DNA MER2_type 0 344 2 285 335 183 35 chr12 26524731 26525416 -117261039 + L2 LINE L2 2287 3064 -208 248 299 118 24 chr12 26525624 26525751 -117260704 + L2 LINE L2 3133 3271 -1 387 326 61 22 chr12 26525957 26526138 -117260317 + MIR SINE MIR 20 207 -55 1898 148 47 18 chr12 26526810 26527148 -117259307 - MER7A DNA MER2_type 0 346 1 1610 158 20 43 chr12 26528023 26528187 -117258268 - AluJo SINE Alu -15 297 142 2327 54 0 60 chr12 26528187 26528504 -117257951 - AluY SINE Alu -13 298 1 1610 158 20 43 chr12 26528504 26528643 -117257812 - AluJo SINE Alu -170 142 1 1523 232 83 51 chr12 26528837 26529367 -117257088 - L2 LINE L2 -354 2960 2414 181 385 11 11 chr12 26529477 26529568 -117256887 - MIR SINE MIR -152 110 20 538 323 18 0 chr12 26531029 26531196 -117255259 - MIR3 SINE MIR -8 200 31 235 353 165 5 chr12 26531409 26531627 -117254828 + L2 LINE L2 2397 2649 -665 295 270 11 98 chr12 26531685 26531859 -117254596 + MLT1J LTR MaLR 112 270 -241 200 366 73 26 chr12 26532050 26532241 -117254214 + L2 LINE L2 2770 2969 -345 2252 138 20 81 chr12 26532425 26532881 -117253574 - MSTA LTR MaLR 0 428 1 191 119 0 71 chr12 26532949 26532991 -117253464 + L2 LINE L2 3229 3267 -5 390 284 69 76 chr12 26533693 26533968 -117252487 + L1ME2 LINE L1 5891 6163 -1 723 243 225 16 chr12 26533973 26534455 -117252000 + L1ME3A LINE L1 5275 5867 -295 8868 182 38 69 chr12 26535153 26536992 -117249463 + L1M1 LINE L1 12 1775 -5790 369 0 0 0 chr12 26536992 26537033 -117249422 + (GA)n Simple_repeat Simple_repeat 2 42 0 8868 182 38 69 chr12 26537033 26537363 -117249092 + L1M1 LINE L1 1775 2114 -5451 2902 254 54 19 chr12 26537376 26538383 -117248072 + L1PBa LINE L1 6 1047 -5816 336 48 0 0 chr12 26539111 26539153 -117247302 + (CA)n Simple_repeat Simple_repeat 2 43 0 1190 180 20 46 chr12 26539408 26539713 -117246742 + L1MA9 LINE L1 6011 6307 -5 588 279 60 17 chr12 26540343 26540651 -117245804 - MLT1G1 LTR MaLR -184 358 68 372 294 20 0 chr12 26543455 26543557 -117242898 + MER5A DNA MER1_type 3 106 -83 20062 45 51 3 chr12 26544739 26547436 -117239019 + L1PA2 LINE L1 2 2827 -3319 14337 24 0 0 chr12 26547436 26549888 -117236567 + L1PA2 LINE L1 3700 6153 -2 876 150 0 0 chr12 26549995 26550128 -117236327 + FLAM_C SINE Alu 1 133 0 1903 134 24 10 chr12 26550603 26550895 -117235560 - AluJb SINE Alu -12 300 5 6266 209 37 9 chr12 26550914 26553265 -117233190 - L1MB8 LINE L1 -125 6864 4443 785 154 68 25 chr12 26553242 26553444 -117233011 - L1M4 LINE L1 -723 6266 6057 * 1373 235 40 34 chr12 26553493 26553969 -117232486 - L1MB8 LINE L1 -5025 1830 1352 13769 197 39 12 chr12 26553979 26555857 -117230598 - L1PB1 LINE L1 0 6867 5041 2307 103 6 3 chr12 26555857 26556168 -117230287 - AluSp SINE Alu -1 312 1 13769 197 39 12 chr12 26556168 26560824 -117225631 - L1PB1 LINE L1 -1826 5041 6 3491 282 56 40 chr12 26560832 26562182 -117224273 - L1MB8 LINE L1 -5487 1372 1 1904 210 83 7 chr12 26562189 26562647 -117223808 - MLT1D LTR MaLR 0 505 13 206 390 10 10 chr12 26562685 26562785 -117223670 - MIR SINE MIR -68 140 41 2739 23 3 0 chr12 26562989 26563299 -117223156 - AluY SINE Alu 0 311 1 189 214 0 0 chr12 26564748 26564790 -117221665 + (TA)n Simple_repeat Simple_repeat 1 42 0 331 269 0 10 chr12 26564790 26564894 -117221561 - L1ME3A LINE L1 -20 6150 6048 194 220 17 0 chr12 26566053 26566112 -117220343 + (TG)n Simple_repeat Simple_repeat 1 60 0 2333 121 0 13 chr12 26567545 26567859 -117218596 - AluSx SINE Alu -2 310 1 185 0 40 0 chr12 26568336 26568361 -117218094 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 234 254 0 0 chr12 26568458 26568513 -117217942 + L2 LINE L2 3257 3311 -2 857 292 211 13 chr12 26568915 26569298 -117217157 + L2 LINE L2 2340 2798 -516 309 302 93 8 chr12 26569323 26569452 -117217003 + L2 LINE L2 3165 3304 -9 336 221 26 0 chr12 26569514 26569591 -117216864 + L1MA9 LINE L1 6002 6080 -232 452 208 28 0 chr12 26569594 26569700 -117216755 + L1MA9 LINE L1 6180 6288 -24 23 33 0 0 chr12 26569701 26569731 -117216724 + AT_rich Low_complexity Low_complexity 1 30 0 802 219 0 0 chr12 26569738 26569884 -117216571 + FRAM SINE Alu 1 146 -30 284 283 44 18 chr12 26569965 26570078 -117216377 - L2 LINE L2 -34 3279 3164 * 623 268 72 25 chr12 26570077 26570312 -117216143 + MIR SINE MIR 8 253 -9 360 290 0 0 chr12 26570712 26570805 -117215650 + G-rich Low_complexity Low_complexity 1 93 0 8085 147 29 9 chr12 26570807 26572471 -117213984 + L1PBa LINE L1 886 2782 -4081 8359 199 14 9 chr12 26572477 26574305 -117212150 + L1 LINE L1 2827 4664 -2198 15333 153 35 6 chr12 26574310 26575639 -117210816 + L1MA2 LINE L1 2863 4153 -3570 2394 120 19 6 chr12 26575639 26575998 -117210457 + THE1B LTR MaLR 1 364 0 15333 153 35 6 chr12 26575998 26579392 -117207063 + L1MA2 LINE L1 4153 7723 0 1117 119 31 0 chr12 26579568 26579762 -117206693 - L1MA4 LINE L1 -5 6295 6096 209 33 33 0 chr12 26580068 26580098 -117206357 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 608 174 31 0 chr12 26581071 26581169 -117205286 - 7SLRNA srpRNA srpRNA -14 306 206 289 242 116 0 chr12 26581421 26581516 -117204939 - L2 LINE L2 -78 3235 3130 195 42 0 0 chr12 26581776 26581800 -117204655 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr12 26582101 26582122 -117204333 + AT_rich Low_complexity Low_complexity 1 21 0 42179 41 26 2 chr12 26582122 26588131 -117198324 - L1PA4 LINE L1 -3 6152 2 3770 199 20 31 chr12 26588131 26589196 -117197259 - L1MEc LINE L1 -3035 3180 2170 * 3833 245 100 20 chr12 26589181 26590596 -117195859 - L1MEc LINE L1 -4822 1462 38 247 314 119 8 chr12 26592163 26592281 -117194174 + L1ME LINE L1 5513 5643 -478 339 293 63 59 chr12 26592865 26593353 -117193102 + L1ME LINE L1 895 1253 -4866 608 308 174 20 chr12 26593466 26593498 -117192957 + L1ME LINE L1 4612 4638 -1491 2479 221 48 23 chr12 26593498 26594109 -117192346 - MLT1E2 LTR MaLR 0 626 1 608 308 174 20 chr12 26594109 26594566 -117191889 + L1ME LINE L1 4638 5176 -953 340 281 77 18 chr12 26594637 26594869 -117191586 + L1ME LINE L1 5258 5504 -645 544 340 167 25 chr12 26594964 26596284 -117190171 - L2 LINE L2 -464 2850 1344 522 219 44 0 chr12 26596518 26596632 -117189823 + MIR SINE MIR 82 200 -62 864 233 84 13 chr12 26596735 26597044 -117189411 - MER46C DNA MER2_type -3 335 5 263 293 0 0 chr12 26597049 26597131 -117189324 + L1MC4 LINE L1 6614 6695 -1347 234 0 0 0 chr12 26597131 26597157 -117189298 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 270 0 0 0 chr12 26597156 26597186 -117189269 + (TA)n Simple_repeat Simple_repeat 1 30 0 239 137 20 0 chr12 26598908 26598959 -117187496 - L1PB1 LINE L1 -3 6148 6097 475 168 17 10 chr12 26598959 26599079 -117187376 - L1MB1 LINE L1 -339 5850 5729 275 267 147 17 chr12 26599372 26599488 -117186967 - L2 LINE L2 0 3313 3183 237 293 98 0 chr12 26600221 26600303 -117186152 - L2 LINE L2 -32 3281 3192 244 362 49 56 chr12 26600462 26600749 -117185706 - L2 LINE L2 0 3272 2988 314 312 23 50 chr12 26600768 26600989 -117185466 + L2 LINE L2 2809 3023 -249 2323 89 7 0 chr12 26601496 26601799 -117184656 + AluSg SINE Alu 1 305 -5 306 330 31 10 chr12 26602255 26602352 -117184103 - MIR SINE MIR -78 130 32 189 372 22 44 chr12 26603187 26603324 -117183131 - MIR SINE MIR -82 180 47 4489 181 54 20 chr12 26603415 26604650 -117181805 + L1MA9 LINE L1 4960 6239 -73 297 0 0 0 chr12 26604650 26604683 -117181772 + (TA)n Simple_repeat Simple_repeat 1 33 0 4489 181 54 20 chr12 26604683 26604719 -117181736 + L1MA9 LINE L1 6239 6272 -40 2428 66 0 7 chr12 26605214 26605519 -117180936 - AluY SINE Alu -8 303 1 188 200 71 129 chr12 26606186 26606271 -117180184 + L2 LINE L2 3234 3313 0 183 42 0 0 chr12 26607086 26607110 -117179345 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1212 48 0 0 chr12 26607111 26607256 -117179199 - L1PA3 LINE L1 -18 6137 5993 2187 23 0 0 chr12 26607256 26607626 -117178829 - L1P1 LINE L1 -635 5520 5151 195 214 36 36 chr12 26607659 26607715 -117178740 + MIR3 SINE MIR 112 167 -41 315 346 78 25 chr12 26608841 26609084 -117177371 - L1MC4a LINE L1 -1805 6003 5748 37 39 0 0 chr12 26609108 26609159 -117177296 + AT_rich Low_complexity Low_complexity 1 51 0 413 330 42 11 chr12 26609284 26609545 -117176910 - L1MC4a LINE L1 -2164 5644 5376 22 80 0 0 chr12 26609573 26609623 -117176832 + AT_rich Low_complexity Low_complexity 1 50 0 2170 83 9 23 chr12 26609625 26609961 -117176494 - L1MA1 LINE L1 -100 6202 5871 304 220 66 11 chr12 26609972 26610063 -117176392 - L1 LINE L1 -1139 5007 4912 745 287 124 55 chr12 26610112 26610672 -117175783 - L1 LINE L1 -1304 4842 4216 1671 176 40 0 chr12 26610672 26610977 -117175478 - AluSx SINE Alu 0 316 1 745 287 124 55 chr12 26610977 26611157 -117175298 - L1 LINE L1 -1930 4216 4050 21 0 0 0 chr12 26611902 26611923 -117174532 + AT_rich Low_complexity Low_complexity 1 21 0 469 305 58 0 chr12 26612146 26612320 -117174135 + MER112 DNA MER1_type 77 260 0 330 334 85 47 chr12 26612348 26612663 -117173792 - L2 LINE L2 -222 3050 2730 405 339 81 19 chr12 26612770 26613030 -117173425 + L2 LINE L2 2229 2504 -810 398 344 121 39 chr12 26613053 26613548 -117172907 + L2 LINE L2 2725 3266 -6 212 274 0 27 chr12 26613670 26613743 -117172712 + GA-rich Low_complexity Low_complexity 4 74 0 537 270 14 19 chr12 26613750 26613965 -117172490 + L1ME3A LINE L1 1224 1437 -4959 492 326 67 19 chr12 26613967 26614237 -117172218 + L1ME3A LINE L1 1535 1817 -4579 1602 226 46 22 chr12 26614312 26614768 -117171687 - MLT1C LTR MaLR 0 467 1 2414 78 0 0 chr12 26614934 26615229 -117171226 + AluSq SINE Alu 1 295 -18 304 198 37 0 chr12 26615232 26615313 -117171142 - L1 LINE L1 -3185 2961 2878 728 219 172 47 chr12 26615313 26615656 -117170799 + L1ME3A LINE L1 3848 4233 -1982 * 1601 272 41 39 chr12 26615645 26616208 -117170247 + L1ME3A LINE L1 5664 6227 -12 485 286 258 13 chr12 26616567 26616885 -117169570 + MLT1J LTR MaLR 78 473 -38 357 260 184 20 chr12 26616979 26617168 -117169287 + L1MC4 LINE L1 7689 7846 -196 2107 119 14 0 chr12 26617168 26617463 -117168992 + AluSq SINE Alu 3 301 -12 357 260 184 20 chr12 26617463 26617577 -117168878 + L1MC4 LINE L1 7846 8042 0 26 0 0 0 chr12 26620512 26620538 -117165917 + AT_rich Low_complexity Low_complexity 1 26 0 207 397 140 0 chr12 26621680 26621816 -117164639 - MIR3 SINE MIR -14 194 40 537 255 56 37 chr12 26622661 26622822 -117163633 - MIR SINE MIR -92 170 7 2031 150 0 3 chr12 26623051 26623358 -117163097 + AluSx SINE Alu 1 306 -6 1633 162 67 7 chr12 26624987 26625271 -117161184 + AluJo SINE Alu 1 301 -11 22 0 0 0 chr12 26626060 26626082 -117160373 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 26626486 26626509 -117159946 + AT_rich Low_complexity Low_complexity 1 23 0 2193 109 0 0 chr12 26626532 26626825 -117159630 - AluSx SINE Alu -18 294 2 1607 159 74 21 chr12 26626840 26627166 -117159289 - MER61A LTR ERV1 0 343 1 2018 163 45 16 chr12 26627166 26627613 -117158842 + L1MB4 LINE L1 5684 6143 -37 336 48 0 0 chr12 26629058 26629100 -117157355 + (CA)n Simple_repeat Simple_repeat 2 43 0 1190 180 20 46 chr12 26629355 26629660 -117156795 + L1MA9 LINE L1 6011 6307 -5 588 279 60 17 chr12 26630290 26630598 -117155857 - MLT1G1 LTR MaLR -184 358 68 372 294 20 0 chr12 26633404 26633506 -117152949 + MER5A DNA MER1_type 3 106 -83 20068 45 51 3 chr12 26634688 26637384 -117149071 + L1PA2 LINE L1 2 2827 -3319 14337 24 0 0 chr12 26637384 26639836 -117146619 + L1PA2 LINE L1 3700 6153 -2 876 150 0 0 chr12 26639943 26640076 -117146379 + FLAM_C SINE Alu 1 133 0 2226 120 0 3 chr12 26640551 26640852 -117145603 - AluSx SINE Alu -12 300 1 1949 137 11 0 chr12 26640915 26641199 -117145256 - AluJo SINE Alu -25 287 1 378 0 0 0 chr12 26642434 26642476 -117143979 + (TG)n Simple_repeat Simple_repeat 1 42 0 856 265 118 43 chr12 26642905 26643369 -117143086 - L2 LINE L2 -11 3302 2804 307 212 61 81 chr12 26643913 26644012 -117142443 - MER91B DNA MER1_type -1 189 93 506 238 49 8 chr12 26644027 26644149 -117142306 - MER91B DNA MER1_type -60 130 4 10177 72 3 5 chr12 26644202 26645544 -117140911 + HERVL LTR ERVL 3965 5304 -350 2119 101 3 7 chr12 26645544 26645830 -117140625 - AluSq SINE Alu -18 295 11 2026 33 17 43 chr12 26645830 26646130 -117140325 + HERVL-A1 LTR ERVL 5363 5654 0 2748 61 24 16 chr12 26646130 26646507 -117139948 + MLT2A1 LTR ERVL 1 380 -64 979 82 0 0 chr12 26646570 26646705 -117139750 + HERVL LTR ERVL 5092 5226 -428 222 323 0 0 chr12 26646980 26647042 -117139413 + CT-rich Low_complexity Low_complexity 2 63 0 184 344 0 16 chr12 26647616 26647677 -117138778 - MIR3 SINE MIR -17 191 132 * 542 271 42 57 chr12 26647661 26647853 -117138602 + MIR SINE MIR 59 247 -15 24 0 0 0 chr12 26648790 26648814 -117137641 + AT_rich Low_complexity Low_complexity 1 24 0 550 285 101 74 chr12 26649226 26649552 -117136903 + MLT1J LTR MaLR 133 467 -44 1999 75 86 25 chr12 26649755 26650034 -117136421 + AluSq SINE Alu 1 296 -17 23 33 0 0 chr12 26650281 26650311 -117136144 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr12 26650397 26650437 -117136018 + AT_rich Low_complexity Low_complexity 1 40 0 569 278 99 14 chr12 26650443 26650878 -117135577 + L1ME3A LINE L1 5697 6164 -6 1492 186 50 7 chr12 26650887 26651166 -117135289 + AluJb SINE Alu 1 291 -21 942 192 21 1 chr12 26651277 26651629 -117134826 + MSTD LTR MaLR 1 396 0 368 268 162 14 chr12 26652732 26652874 -117133581 + MER5A DNA MER1_type 24 186 -3 535 248 24 0 chr12 26653427 26653552 -117132903 + L1ME3A LINE L1 6034 6161 -9 1264 124 0 69 chr12 26653668 26653885 -117132570 + AluJo SINE Alu 5 206 -106 621 232 39 32 chr12 26655147 26655302 -117131153 + MIR SINE MIR 86 241 -21 729 217 189 0 chr12 26655429 26655641 -117130814 - MIR SINE MIR -4 258 7 416 290 65 7 chr12 26655880 26656018 -117130437 - MIR SINE MIR -18 244 99 268 253 13 40 chr12 26656033 26656108 -117130347 + MIR SINE MIR 159 231 -31 33 66 0 0 chr12 26656376 26656437 -117130018 + AT_rich Low_complexity Low_complexity 1 61 0 2762 181 34 2 chr12 26657078 26657580 -117128875 - LTR53 LTR ERVL -1 518 1 230 323 0 0 chr12 26658246 26658308 -117128147 - L2 LINE L2 -6 3307 3246 2194 80 24 6 chr12 26658359 26658635 -117127820 + L1PA4 LINE L1 4552 4837 -1309 7499 30 1 0 chr12 26658635 26659523 -117126932 + L1PA4 LINE L1 5263 6155 0 2194 80 24 6 chr12 26659523 26659584 -117126871 + L1PA4 LINE L1 4837 4895 -1251 2551 234 72 64 chr12 26659589 26660545 -117125910 + L1MEc LINE L1 35 1001 -5395 2036 125 10 0 chr12 26660545 26660840 -117125615 - AluSx SINE Alu -14 298 1 2551 234 72 64 chr12 26660840 26660893 -117125562 + L1MEc LINE L1 1001 1052 -5344 879 258 76 89 chr12 26660919 26661469 -117124986 - MER68 LTR ERV1 -19 543 1 359 200 0 0 chr12 26661469 26661554 -117124901 + L1MEc LINE L1 1074 1158 -5238 427 286 44 30 chr12 26661927 26662127 -117124328 - MIR SINE MIR -50 212 15 409 284 9 0 chr12 26662449 26662565 -117123890 - MER117 DNA MER1_type -72 125 9 862 273 52 13 chr12 26662586 26662817 -117123638 + MIR SINE MIR 2 241 -21 453 296 74 22 chr12 26663085 26663315 -117123140 + L1ME4a LINE L1 5734 5975 -146 287 203 39 88 chr12 26663383 26663565 -117122890 + L1ME4a LINE L1 5935 6107 -14 22 0 0 0 chr12 26663775 26663797 -117122658 + AT_rich Low_complexity Low_complexity 1 22 0 853 69 35 0 chr12 26663855 26663971 -117122484 - L1PA16 LINE L1 -9 6157 6038 895 258 32 16 chr12 26665348 26665600 -117120855 + MIR SINE MIR 5 260 -2 216 252 149 47 chr12 26665861 26665968 -117120487 - L2 LINE L2 -219 3053 2936 461 299 85 41 chr12 26666743 26667121 -117119334 + L1MC4a LINE L1 5662 5912 -252 8216 164 18 10 chr12 26667352 26669798 -117116657 - L1PA16 LINE L1 -1 6165 3704 1903 117 78 0 chr12 26669798 26670079 -117116376 + AluSq SINE Alu 1 303 -10 8216 164 18 10 chr12 26670079 26670220 -117116235 - L1PA16 LINE L1 -2462 3704 3566 732 203 0 86 chr12 26670222 26670444 -117116011 + L1PA16 LINE L1 3363 3565 -2581 359 277 139 59 chr12 26670738 26670976 -117115479 - L1M2 LINE L1 -5797 1052 796 1005 269 79 51 chr12 26671114 26672142 -117114313 - L1PA12 LINE L1 -5501 2080 10 230 203 0 85 chr12 26672165 26672224 -117114231 - LTR33A LTR ERVL -3 520 467 1670 57 33 0 chr12 26672231 26672443 -117114012 + AluY SINE Alu 93 311 0 506 241 80 5 chr12 26672453 26672652 -117113803 + L1MC5 LINE L1 6963 7176 -785 * 5292 91 33 7 chr12 26672648 26673466 -117112989 - L1PA13 LINE L1 -2 6161 5323 668 93 26 130 chr12 26673456 26673632 -117112823 - L1P LINE L1 -755 5391 5236 * 2365 118 8 8 chr12 26673633 26673988 -117112467 - THE1A LTR MaLR 0 355 1 2149 94 10 0 chr12 26673988 26674295 -117112160 - THE1A-int LTR MaLR 0 1580 1271 * 5146 167 64 31 chr12 26674289 26675433 -117111022 + L1MC3 LINE L1 6596 7777 -8 2307 87 0 3 chr12 26675469 26675767 -117110688 - AluY SINE Alu -14 297 1 340 289 0 10 chr12 26675828 26675925 -117110530 + L1MC5 LINE L1 7790 7885 -76 366 224 208 0 chr12 26676973 26677098 -117109357 + MER103 DNA DNA 9 159 -7 198 103 0 0 chr12 26677450 26677479 -117108976 + (A)n Simple_repeat Simple_repeat 1 29 0 391 294 38 21 chr12 26677918 26678294 -117108161 + L1MCc LINE L1 1181 1729 -4892 301 370 52 35 chr12 26678322 26678495 -117107960 + L1MCc LINE L1 1686 1861 -5082 5727 149 11 38 chr12 26678496 26678794 -117107661 + L1PB3 LINE L1 4125 4429 -1725 296 104 0 0 chr12 26678794 26678842 -117107613 - MADE1 DNA Mariner 0 80 33 5727 149 11 38 chr12 26678842 26680586 -117105869 + L1PB3 LINE L1 4429 6153 -1 790 287 100 10 chr12 26680658 26681151 -117105304 + L1MCc LINE L1 1849 2468 -4550 334 222 76 38 chr12 26681176 26681361 -117105094 + L1MCc LINE L1 2845 3036 -4086 389 225 0 0 chr12 26681384 26681464 -117104991 + Tigger5 DNA MER2_type 2 81 -2242 302 257 0 0 chr12 26681462 26681532 -117104923 - Tigger5 DNA MER2_type -12 2311 2242 * 363 133 17 0 chr12 26681524 26681584 -117104871 + Tigger5 DNA MER2_type 2244 2304 -19 233 197 60 68 chr12 26681605 26681656 -117104799 + L1MCc LINE L1 3025 3075 -3866 1356 142 19 11 chr12 26681656 26681923 -117104532 + L1MA9 LINE L1 6044 6312 0 233 197 60 68 chr12 26681923 26681988 -117104467 + L1MCc LINE L1 3075 3140 -3801 2185 311 52 28 chr12 26681992 26683148 -117103307 + HERV16 LTR ERVL 1386 2631 -2365 595 198 0 0 chr12 26683185 26683291 -117103164 + Tigger7 DNA MER2_type 1 106 -599 2154 158 72 17 chr12 26683443 26683915 -117102540 + Tigger7 DNA MER2_type 107 2486 -1 553 204 30 15 chr12 26683915 26684047 -117102408 + HERV16 LTR ERVL 2666 2799 -2197 2538 231 32 75 chr12 26684068 26684909 -117101546 - MER21B LTR ERV1 -57 806 2 3097 316 36 48 chr12 26684910 26686745 -117099710 + HERV16 LTR ERVL 2833 4645 -1119 1304 71 44 0 chr12 26686954 26687137 -117099318 - L1PA8 LINE L1 -3 6169 5979 278 297 210 31 chr12 26687239 26687434 -117099021 + L3 LINE CR1 1341 1570 -7 27 0 0 0 chr12 26687684 26687711 -117098744 + AT_rich Low_complexity Low_complexity 1 27 0 255 307 0 11 chr12 26688646 26688734 -117097721 + GA-rich Low_complexity Low_complexity 2 88 0 2278 101 3 0 chr12 26688889 26689187 -117097268 + AluSq SINE Alu 1 299 -14 218 207 73 85 chr12 26691397 26691479 -117094976 + MIR SINE MIR 26 106 -156 222 91 0 0 chr12 26691686 26691719 -117094736 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1658 162 0 8 chr12 26691807 26692095 -117094360 - AluJo SINE Alu 0 317 32 600 171 26 0 chr12 26692105 26692222 -117094233 - MER3 DNA MER1_type -88 121 2 2245 193 38 36 chr12 26692285 26692538 -117093917 + L1MC4 LINE L1 7316 7567 -475 2144 103 0 0 chr12 26692538 26692854 -117093601 + AluSx SINE Alu 2 317 0 2245 193 38 36 chr12 26692854 26693153 -117093302 + L1MC4 LINE L1 7567 7870 -172 2431 222 94 40 chr12 26693497 26694338 -117092117 + L1ME1 LINE L1 782 1653 -4753 2272 86 0 3 chr12 26694338 26694628 -117091827 - AluSc SINE Alu -18 291 3 2431 222 94 40 chr12 26694628 26694889 -117091566 + L1ME1 LINE L1 1653 1899 -4507 2468 240 62 16 chr12 26694892 26695868 -117090587 + L1ME1 LINE L1 4726 5755 -743 1085 153 21 153 chr12 26695882 26696268 -117090187 + L1 LINE L1 3290 3624 -2522 2447 244 25 15 chr12 26696270 26696937 -117089518 + L1ME1 LINE L1 5735 6408 -18 622 228 15 20 chr12 26696971 26697026 -117089429 + L1MC4 LINE L1 7847 7901 -141 302 60 0 40 chr12 26697026 26697076 -117089379 + (TAGG)n Simple_repeat Simple_repeat 4 51 0 622 228 15 20 chr12 26697076 26697217 -117089238 + L1MC4 LINE L1 7901 8042 0 1215 92 10 77 chr12 26697234 26697430 -117089025 - AluSg/x SINE Alu -15 297 115 232 147 0 0 chr12 26698112 26698146 -117088309 + Alu SINE Alu 1 34 -267 4453 135 32 58 chr12 26698146 26699353 -117087102 - pTR5 LTR ERV1 0 2606 1524 9170 97 13 1 chr12 26700022 26701291 -117085164 + HSMAR1 DNA Mariner 3 1287 0 407 327 127 23 chr12 26702832 26703132 -117083323 + L2 LINE L2 2150 2480 -834 707 336 90 36 chr12 26704505 26704691 -117081764 - L2 LINE L2 -404 2910 2736 1905 169 0 0 chr12 26704691 26704987 -117081468 - AluJb SINE Alu -16 296 1 707 336 90 36 chr12 26704987 26705333 -117081122 - L2 LINE L2 -578 2736 2349 198 0 0 0 chr12 26705626 26705648 -117080807 + (TAA)n Simple_repeat Simple_repeat 2 23 0 304 192 154 0 chr12 26705899 26705977 -117080478 - L1ME4a LINE L1 -35 6086 5997 581 329 49 23 chr12 26706350 26706657 -117079798 + L2 LINE L2 2170 2484 -830 247 332 205 0 chr12 26706693 26706883 -117079572 - MIR SINE MIR -16 246 18 332 300 72 56 chr12 26707726 26707976 -117078479 + L2 LINE L2 2664 2917 -397 1389 352 70 27 chr12 26708746 26709912 -117076543 + L2 LINE L2 1761 2977 -337 465 351 32 63 chr12 26709918 26710203 -117076252 - L2 LINE L2 -2 3270 2995 1251 112 107 0 chr12 26710834 26711039 -117075416 - MER30 DNA MER1_type 0 230 4 2247 112 0 0 chr12 26711314 26711608 -117074847 + AluSq SINE Alu 1 294 -19 2134 129 0 13 chr12 26712822 26713133 -117073322 + AluSx SINE Alu 2 308 -4 251 301 0 0 chr12 26713156 26713229 -117073226 + (TA)n Simple_repeat Simple_repeat 2 74 0 460 301 166 10 chr12 26713914 26714113 -117072342 - MIR SINE MIR -13 249 20 235 322 11 0 chr12 26714196 26714286 -117072169 + MLT1I LTR MaLR 65 155 -254 247 165 113 122 chr12 26714348 26714463 -117071992 + LTR33 LTR ERVL 150 263 -258 313 264 56 16 chr12 26714529 26714654 -117071801 + LTR33 LTR ERVL 390 519 -2 605 273 120 5 chr12 26714774 26714990 -117071465 - MIR SINE MIR -19 243 3 375 313 147 38 chr12 26715962 26716173 -117070282 - MIR SINE MIR 0 262 29 495 0 0 0 chr12 26717014 26717069 -117069386 + (GA)n Simple_repeat Simple_repeat 1 55 0 326 169 0 17 chr12 26717649 26717708 -117068747 + MER81 DNA DNA 8 65 -49 25 0 0 0 chr12 26718534 26718559 -117067896 + AT_rich Low_complexity Low_complexity 1 25 0 33 0 0 0 chr12 26718767 26718800 -117067655 + AT_rich Low_complexity Low_complexity 1 33 0 23 78 0 0 chr12 26718825 26718876 -117067579 + AT_rich Low_complexity Low_complexity 1 51 0 2735 20 0 0 chr12 26718956 26719260 -117067195 - AluYb8 SINE Alu -14 304 1 1460 176 0 4 chr12 26719600 26719861 -117066594 + L1PA6 LINE L1 10 269 -6192 * 29527 66 4 3 chr12 26719852 26725242 -117061213 + L1PA6 LINE L1 1074 6469 0 21 36 0 0 chr12 26725937 26725965 -117060490 + AT_rich Low_complexity Low_complexity 1 28 0 576 221 24 99 chr12 26726254 26726467 -117059988 - L2 LINE L2 0 3313 3117 181 234 0 117 chr12 26726589 26726666 -117059789 - L2 LINE L2 0 3272 3205 212 29 0 59 chr12 26727590 26727624 -117058831 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 180 158 0 0 chr12 26728751 26728789 -117057666 + (TG)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr12 26729149 26729172 -117057283 + AT_rich Low_complexity Low_complexity 1 23 0 657 145 14 72 chr12 26729366 26729504 -117056951 - AluJb SINE Alu -178 134 5 1337 130 0 5 chr12 26730285 26730477 -117055978 + AluJb SINE Alu 109 299 -13 1279 172 28 31 chr12 26730477 26730768 -117055687 + MLT1B LTR MaLR 101 390 0 249 323 31 10 chr12 26731014 26731110 -117055345 + L2 LINE L2 3155 3252 -61 1328 127 0 0 chr12 26731114 26731311 -117055144 - L1PA13 LINE L1 -15 6148 5952 230 347 105 32 chr12 26732294 26732513 -117053942 + MIR SINE MIR 1 235 -27 2147 113 0 16 chr12 26733847 26734156 -117052299 + AluSg SINE Alu 1 304 -6 270 296 14 63 chr12 26734260 26734402 -117052053 - MIR3 SINE MIR -15 193 59 2068 108 3 56 chr12 26734757 26735080 -117051375 + AluSc SINE Alu 3 308 -1 416 197 87 24 chr12 26735375 26735502 -117050953 + Charlie7 DNA MER1_type 553 687 -1925 897 196 29 29 chr12 26735807 26735965 -117050490 + MER3 DNA MER1_type 1 161 -48 2381 96 0 0 chr12 26735965 26736268 -117050187 + AluSg SINE Alu 1 303 -7 897 196 29 29 chr12 26736268 26736318 -117050137 + MER3 DNA MER1_type 160 209 0 201 184 0 26 chr12 26736350 26736388 -117050067 + L2 LINE L2 3204 3240 -32 276 284 80 0 chr12 26737247 26737409 -117049046 + L1ME4a LINE L1 5944 6118 -3 275 48 0 24 chr12 26737491 26737533 -117048922 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 24 0 0 0 chr12 26737703 26737727 -117048728 + AT_rich Low_complexity Low_complexity 1 24 0 1487 165 45 36 chr12 26737948 26738257 -117048198 - AluJb SINE Alu 0 312 1 21 0 0 0 chr12 26739327 26739348 -117047107 + AT_rich Low_complexity Low_complexity 1 21 0 383 323 129 5 chr12 26739596 26739797 -117046658 - MIR SINE MIR -1 261 36 1722 334 116 29 chr12 26740045 26740982 -117045473 + L2 LINE L2 869 1956 -1358 1455 186 30 30 chr12 26740982 26741277 -117045178 - AluJb SINE Alu -17 295 1 1722 334 116 29 chr12 26741277 26741670 -117044785 + L2 LINE L2 1956 2314 -1000 694 236 74 35 chr12 26741709 26741967 -117044488 + MLT1L LTR MaLR 22 289 -326 678 306 108 56 chr12 26742020 26742501 -117043954 + L2 LINE L2 2804 3309 -4 1210 226 37 60 chr12 26742896 26743276 -117043179 - MLT1A2 LTR MaLR 0 374 4 288 235 148 35 chr12 26743939 26744054 -117042401 - MIR SINE MIR -86 176 49 1706 153 3 20 chr12 26744509 26744809 -117041646 + AluY SINE Alu 1 295 -16 23 0 0 0 chr12 26744859 26744882 -117041573 + AT_rich Low_complexity Low_complexity 1 23 0 662 138 0 0 chr12 26745163 26745257 -117041198 + AluSg/x SINE Alu 204 297 -13 1852 156 0 7 chr12 26745264 26745553 -117040902 + AluSx SINE Alu 1 287 -25 297 264 90 35 chr12 26746271 26746415 -117040040 + L3b LINE CR1 1102 1253 -330 2251 122 0 0 chr12 26746453 26746757 -117039698 + AluSx SINE Alu 1 304 -8 2300 119 0 0 chr12 26747682 26747984 -117038471 + AluSg SINE Alu 1 302 -8 375 161 0 92 chr12 26748016 26748103 -117038352 - AluJb SINE Alu -171 131 53 1484 69 19 5 chr12 26748103 26748319 -117038136 - pTR5 LTR ERV1 -2048 390 172 299 245 10 0 chr12 26748322 26748420 -117038035 - LTR30 LTR ERV1 -80 642 544 4020 122 65 83 chr12 26748424 26749428 -117037027 - pTR5 LTR ERV1 -417 2021 745 294 259 0 0 chr12 26749429 26749487 -117036968 - AluJb SINE Alu -244 58 1 307 286 58 18 chr12 26749777 26749948 -117036507 - LTR67 LTR ERVL -7 550 373 21 0 0 0 chr12 26750472 26750493 -117035962 + AT_rich Low_complexity Low_complexity 1 21 0 296 289 117 8 chr12 26751640 26751768 -117034687 - MIR SINE MIR -1 261 120 197 139 23 0 chr12 26751830 26751873 -117034582 + (TG)n Simple_repeat Simple_repeat 1 44 0 1166 155 130 8 chr12 26752183 26752454 -117034001 - L1ME1 LINE L1 -9 6157 5858 1064 198 18 0 chr12 26753179 26753401 -117033054 - L1MB7 LINE L1 0 6184 5959 23 0 0 0 chr12 26753504 26753527 -117032928 + AT_rich Low_complexity Low_complexity 1 23 0 2366 43 0 27 chr12 26754064 26754365 -117032090 + AluY SINE Alu 19 311 0 1367 225 111 53 chr12 26754559 26755071 -117031384 - MLT1F LTR MaLR 0 542 1 564 234 48 8 chr12 26755104 26755228 -117031227 - FLAM_C SINE Alu -13 130 2 2155 106 14 0 chr12 26755234 26755526 -117030929 - AluSq SINE Alu -17 296 1 31 76 0 0 chr12 26755557 26755623 -117030832 + AT_rich Low_complexity Low_complexity 1 66 0 731 130 0 0 chr12 26755938 26756038 -117030417 + AluJ/FLAM SINE Alu 1 100 -212 367 282 0 0 chr12 26756182 26756285 -117030170 + MER117 DNA MER1_type 52 154 -43 21 0 0 0 chr12 26756532 26756553 -117029902 + AT_rich Low_complexity Low_complexity 1 21 0 264 329 73 36 chr12 26756810 26756947 -117029508 - L2 LINE L2 -19 3253 3112 2154 110 3 23 chr12 26756967 26757277 -117029178 - AluSx SINE Alu -8 304 1 258 327 115 0 chr12 26757280 26757384 -117029071 + MIR SINE MIR 121 236 -26 1926 117 0 0 chr12 26758340 26758605 -117027850 + AluSq SINE Alu 1 265 -48 251 211 55 128 chr12 26758723 26758832 -117027623 - MIR SINE MIR -96 166 66 201 372 91 16 chr12 26758848 26758969 -117027486 + L2 LINE L2 3133 3262 -10 391 247 10 0 chr12 26759195 26759292 -117027163 + L1MC3 LINE L1 7045 7142 -643 1469 223 74 28 chr12 26759305 26759762 -117026693 + MLT2B1 LTR ERVL 1 478 -42 365 248 25 6 chr12 26759770 26759931 -117026524 + (CATATA)n Simple_repeat Simple_repeat 3 166 0 242 190 52 0 chr12 26759934 26759992 -117026463 + MLT2B1 LTR ERVL 460 520 0 2503 196 62 9 chr12 26760003 26760581 -117025874 + L1MD3 LINE L1 7382 7990 -5 494 335 21 38 chr12 26761517 26761756 -117024699 - L3 LINE CR1 -36 1541 1307 298 261 80 0 chr12 26761806 26761894 -117024561 + L1MC/D LINE L1 5679 5773 -2035 567 188 7 13 chr12 26762010 26762159 -117024296 + GA-rich Low_complexity Low_complexity 3 150 0 4466 217 44 32 chr12 26762159 26762631 -117023824 + L1ME1 LINE L1 3952 4417 -1729 1565 146 40 80 chr12 26762631 26762954 -117023501 + AluSx SINE Alu 1 312 0 4466 217 44 32 chr12 26762954 26763829 -117022626 + L1ME1 LINE L1 4417 5315 -831 2292 202 75 31 chr12 26763833 26764510 -117021945 + L1MD2 LINE L1 5638 6344 -15 2270 151 36 7 chr12 26764532 26764943 -117021512 + L1MA5 LINE L1 5873 6295 -5 2644 216 69 41 chr12 26764945 26765379 -117021076 + L1ME1 LINE L1 5314 5734 -432 2270 94 0 3 chr12 26765379 26765678 -117020777 + AluY SINE Alu 1 298 -13 2644 216 69 41 chr12 26765678 26766068 -117020387 + L1ME1 LINE L1 5734 6161 -5 2100 90 0 4 chr12 26766257 26766524 -117019931 + AluSq SINE Alu 1 266 -47 287 283 28 9 chr12 26766638 26766744 -117019711 + L2 LINE L2 2553 2660 -654 743 310 53 59 chr12 26766758 26766895 -117019560 - MLT1K LTR MaLR -16 572 436 1684 162 40 14 chr12 26766895 26767191 -117019264 - AluJb SINE Alu -8 304 1 743 310 53 59 chr12 26767191 26767527 -117018928 - MLT1K LTR MaLR -152 436 102 401 334 51 80 chr12 26767618 26768220 -117018235 + L2 LINE L2 2667 3244 -28 2141 87 35 3 chr12 26769752 26770039 -117016416 - AluSg SINE Alu -14 296 1 2077 128 7 7 chr12 26770049 26770353 -117016102 - AluSx SINE Alu -3 309 6 219 140 0 0 chr12 26770522 26770572 -117015883 + (T)n Simple_repeat Simple_repeat 1 50 0 1851 167 94 25 chr12 26771164 26771601 -117014854 - MLT1C LTR MaLR 0 467 1 714 176 110 0 chr12 26771785 26771921 -117014534 + Tigger2 DNA MER2_type 2564 2714 -4 1261 162 113 11 chr12 26771926 26772192 -117014263 + L1MD1 LINE L1 5950 6242 0 629 67 11 0 chr12 26772193 26772283 -117014172 + L1PB2 LINE L1 6059 6149 -2 352 125 0 0 chr12 26772724 26772772 -117013683 - Tigger2 DNA MER2_type -2670 48 1 2700 186 25 13 chr12 26772775 26773571 -117012884 - L1MD1 LINE L1 -296 5946 4961 2259 72 0 69 chr12 26773573 26773892 -117012563 + AluY SINE Alu 1 297 -14 225 200 0 0 chr12 26773909 26773954 -117012501 + T-rich Low_complexity Low_complexity 1 45 0 995 253 63 9 chr12 26773954 26774270 -117012185 - L1MD1 LINE L1 -1198 4948 4616 2129 132 3 0 chr12 26774303 26774598 -117011857 + AluSx SINE Alu 1 296 -16 722 200 0 0 chr12 26774646 26774771 -117011684 + FLAM_C SINE Alu 2 126 -17 21 36 0 0 chr12 26774772 26774800 -117011655 + AT_rich Low_complexity Low_complexity 1 28 0 5784 230 52 22 chr12 26774817 26776392 -117010063 - L1MD1 LINE L1 -1578 4568 2946 534 309 111 61 chr12 26776799 26777161 -117009294 + MLT1K LTR MaLR 188 567 -21 794 291 72 56 chr12 26777228 26777674 -117008781 - MLT1K LTR MaLR 0 588 136 2287 81 3 14 chr12 26777912 26778209 -117008246 + AluY SINE Alu 1 294 -17 214 123 68 27 chr12 26778260 26778333 -117008122 + (TA)n Simple_repeat Simple_repeat 1 76 0 1541 136 0 0 chr12 26778399 26778619 -117007836 + AluSg/x SINE Alu 86 305 -7 1506 187 47 43 chr12 26778865 26779164 -117007291 + AluJb SINE Alu 1 300 -12 1406 169 112 0 chr12 26779306 26779566 -117006889 + AluJb SINE Alu 1 289 -13 29 0 0 0 chr12 26779566 26779595 -117006860 + AT_rich Low_complexity Low_complexity 1 29 0 195 100 0 0 chr12 26780011 26780041 -117006414 + (ATG)n Simple_repeat Simple_repeat 1 30 0 222 317 133 17 chr12 26780194 26780314 -117006141 + MIR SINE MIR 6 140 -68 826 154 0 15 chr12 26780323 26780459 -117005996 + AluJo SINE Alu 1 134 -178 30 45 0 0 chr12 26780465 26780509 -117005946 + AT_rich Low_complexity Low_complexity 1 44 0 2148 87 28 10 chr12 26781691 26781979 -117004476 - AluSx SINE Alu -19 293 1 2262 94 13 3 chr12 26782038 26782336 -117004119 - AluY SINE Alu -10 301 1 1500 183 63 7 chr12 26782337 26782622 -117003833 - AluJo SINE Alu -11 301 1 24 32 0 0 chr12 26783139 26783170 -117003285 + AT_rich Low_complexity Low_complexity 1 31 0 2208 118 3 3 chr12 26783223 26783529 -117002926 + AluSx SINE Alu 1 306 -6 207 275 58 0 chr12 26783740 26783809 -117002646 + MIR3 SINE MIR 127 199 -9 1421 249 124 40 chr12 26784179 26784369 -117002086 - L1MD3 LINE L1 0 8041 7868 2323 79 17 0 chr12 26784369 26784660 -117001795 - AluSx SINE Alu -14 298 3 1421 249 124 40 chr12 26784660 26785075 -117001380 - L1MD3 LINE L1 -173 7868 7400 214 191 0 0 chr12 26785089 26785131 -117001324 + T-rich Low_complexity Low_complexity 1 42 0 3141 130 8 4 chr12 26785132 26785616 -117000839 - L1PA16 LINE L1 -2 6164 5679 2049 147 65 28 chr12 26785616 26786152 -117000303 + MLT2A2 LTR ERVL 2 554 0 5944 159 37 18 chr12 26786152 26786675 -116999780 - L1P4 LINE L1 -482 5684 5172 2330 105 0 3 chr12 26786675 26786988 -116999467 - AluSx SINE Alu 0 312 1 5944 159 37 18 chr12 26786988 26788006 -116998449 - L1P4 LINE L1 -994 5172 4119 2079 90 58 0 chr12 26788175 26788452 -116998003 - AluSg SINE Alu -17 293 1 26 0 0 0 chr12 26788452 26788478 -116997977 + AT_rich Low_complexity Low_complexity 1 26 0 1803 126 51 0 chr12 26788480 26788735 -116997720 - AluSx SINE Alu -44 268 1 2348 221 21 64 chr12 26788842 26789466 -116996989 - L1MDa LINE L1 -5925 615 19 1159 83 0 0 chr12 26789750 26789894 -116996561 + U4 snRNA snRNA 1 144 -1 1116 313 116 13 chr12 26789972 26790582 -116995873 + HAL1 LINE L1 37 709 -1798 1826 215 102 116 chr12 26790585 26790879 -116995576 + HAL1 LINE L1 1221 1518 -989 2330 83 3 17 chr12 26790879 26791181 -116995274 + AluY SINE Alu 1 298 -13 1826 215 102 116 chr12 26791181 26791453 -116995002 + HAL1 LINE L1 1518 1792 -715 2103 131 3 0 chr12 26791453 26791744 -116994711 + AluSg SINE Alu 1 292 -18 1826 215 102 116 chr12 26791744 26792287 -116994168 + HAL1 LINE L1 1792 2341 -166 2406 109 19 30 chr12 26792287 26792655 -116993800 - THE1B LTR MaLR 0 364 1 11814 96 6 2 chr12 26792655 26794228 -116992227 - THE1B-int LTR MaLR 0 1580 2 2430 111 11 27 chr12 26794229 26794599 -116991856 - THE1B LTR MaLR 0 364 1 1826 215 102 116 chr12 26794599 26794701 -116991754 + HAL1 LINE L1 2339 2420 -87 1452 201 40 11 chr12 26795514 26795637 -116990818 + AluJo SINE Alu 1 119 -193 375 78 0 0 chr12 26795637 26795688 -116990767 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1452 201 40 11 chr12 26795688 26795838 -116990617 + AluJo SINE Alu 119 282 -30 1987 205 63 17 chr12 26795838 26796317 -116990138 + L1MD3 LINE L1 7487 7987 -8 793 162 0 0 chr12 26796334 26796451 -116990004 + FLAM_C SINE Alu 1 117 -16 26 30 0 0 chr12 26796455 26796488 -116989967 + AT_rich Low_complexity Low_complexity 1 33 0 805 243 75 54 chr12 26796841 26797174 -116989281 + LTR33 LTR ERVL 182 521 0 540 171 0 38 chr12 26797320 26797451 -116989004 - AluJb SINE Alu 0 309 183 357 346 86 6 chr12 26797867 26798029 -116988426 - MIR SINE MIR -70 192 18 2030 122 0 21 chr12 26798148 26798481 -116987974 + AluSx SINE Alu 1 327 0 255 146 0 0 chr12 26798521 26798562 -116987893 + MER103 DNA DNA 3 43 -123 535 259 27 7 chr12 26798581 26798728 -116987727 + MER91B DNA MER1_type 36 185 -5 2269 96 3 0 chr12 26799186 26799505 -116986950 - AluSx SINE Alu 0 320 1 347 254 62 46 chr12 26799507 26799637 -116986818 - L2 LINE L2 -2 3311 3180 432 370 23 23 chr12 26799755 26800147 -116986308 - L2 LINE L2 -2440 874 483 185 294 88 0 chr12 26800181 26800249 -116986206 - L2 LINE L2 -2910 404 331 2105 98 35 0 chr12 26800665 26800951 -116985504 - AluSg SINE Alu -14 296 1 540 280 55 25 chr12 26801361 26801597 -116984858 - MIR SINE MIR 0 262 20 1557 86 5 0 chr12 26801597 26801807 -116984648 - pTR5 LTR ERV1 -2047 391 181 372 171 64 82 chr12 26801807 26801918 -116984537 - LTR30 LTR ERV1 -70 724 544 4635 130 61 79 chr12 26801918 26802933 -116983522 - pTR5 LTR ERV1 -413 2025 743 2378 97 0 0 chr12 26803035 26803345 -116983110 - AluY SINE Alu -1 310 1 1279 90 150 0 chr12 26803483 26803683 -116982772 - MER30 DNA MER1_type 0 230 1 1232 150 0 42 chr12 26803759 26803952 -116982503 + AluJo SINE Alu 1 185 -127 1341 182 50 59 chr12 26804374 26804614 -116981841 - MLT1B LTR MaLR 0 390 149 2273 92 0 0 chr12 26804614 26804918 -116981537 - AluSx SINE Alu 0 304 1 1341 182 50 59 chr12 26804918 26804930 -116981525 - MLT1B LTR MaLR -241 149 138 1989 125 40 7 chr12 26804930 26805226 -116981229 - AluSx SINE Alu -2 310 5 1341 182 50 59 chr12 26805226 26805432 -116981023 - MLT1B LTR MaLR -252 138 1 459 0 0 0 chr12 26808626 26808677 -116977778 + (TG)n Simple_repeat Simple_repeat 2 52 0 314 282 194 5 chr12 26809359 26809565 -116976890 - MIR SINE MIR -1 261 17 1697 196 0 0 chr12 26809935 26810241 -116976214 + AluJb SINE Alu 1 306 -6 212 296 62 0 chr12 26810541 26810622 -116975833 + MIR SINE MIR 58 143 -119 1508 191 47 0 chr12 26810677 26810934 -116975521 - AluJo SINE Alu -43 269 1 285 325 155 12 chr12 26810943 26811278 -116975177 + L2 LINE L2 2109 2491 -823 289 262 16 66 chr12 26811985 26812107 -116974348 + L2 LINE L2 3150 3265 -7 1901 161 0 19 chr12 26812443 26812759 -116973696 - AluJb SINE Alu -2 310 1 308 200 0 17 chr12 26813603 26813663 -116972792 + MER112 DNA MER1_type 6 64 -196 2317 118 0 3 chr12 26814203 26814516 -116971939 + AluSx SINE Alu 1 312 0 380 211 0 13 chr12 26814720 26814796 -116971659 - MER112 DNA MER1_type 0 260 186 1781 137 3 72 chr12 26815163 26815534 -116970921 - MER4A LTR ERV1 0 664 261 469 167 89 0 chr12 26815534 26815624 -116970831 - MER4A LTR ERV1 -566 98 1 209 137 39 0 chr12 26815628 26815679 -116970776 + CT-rich Low_complexity Low_complexity 5 57 0 1975 106 4 4 chr12 26815686 26815960 -116970495 - AluSx SINE Alu -38 274 1 344 183 0 17 chr12 26815974 26816034 -116970421 - MER112 DNA MER1_type -196 64 6 279 340 27 7 chr12 26816046 26816193 -116970262 - L2 LINE L2 -729 2585 2436 187 250 135 52 chr12 26816377 26816473 -116969982 - L2 LINE L2 -183 3089 2986 1911 166 0 0 chr12 26816773 26817075 -116969380 - AluJo SINE Alu -10 302 1 2380 118 3 0 chr12 26817163 26817502 -116968953 - L1PA16 LINE L1 -13 6153 5814 537 273 84 44 chr12 26817697 26818143 -116968312 - LTR33A LTR ERVL -2 521 1 694 107 8 14 chr12 26818351 26818596 -116967859 + AluSx SINE Alu 1 295 -17 35 24 0 0 chr12 26818596 26818638 -116967817 + AT_rich Low_complexity Low_complexity 1 42 0 845 104 0 15 chr12 26818785 26818919 -116967536 + FLAM_C SINE Alu 2 133 0 417 192 18 132 chr12 26818947 26819114 -116967341 - MIR SINE MIR -13 249 102 248 230 0 27 chr12 26819404 26819478 -116966977 - MLT1K LTR MaLR -6 582 511 1746 159 0 39 chr12 26819478 26819787 -116966668 + AluJb SINE Alu 2 298 -14 504 280 102 64 chr12 26819816 26820159 -116966296 - MLT1K LTR MaLR -73 515 160 28 79 0 0 chr12 27021655 27021718 -116764737 + AT_rich Low_complexity Low_complexity 1 63 0 182 228 0 88 chr12 27021963 27022020 -116764435 + L3 LINE CR1 1515 1566 -11 290 256 58 44 chr12 27022367 27022504 -116763951 + MIR3 SINE MIR 45 183 -25 25 0 0 0 chr12 27023351 27023376 -116763079 + AT_rich Low_complexity Low_complexity 1 25 0 200 279 0 0 chr12 27024086 27024154 -116762301 + (TA)n Simple_repeat Simple_repeat 2 69 0 282 73 0 0 chr12 27025204 27025245 -116761210 + (CGG)n Simple_repeat Simple_repeat 3 43 0 22 0 0 0 chr12 27025398 27025420 -116761035 + GC_rich Low_complexity Low_complexity 1 22 0 259 71 18 54 chr12 27025527 27025583 -116760872 + (CCG)n Simple_repeat Simple_repeat 3 56 0 201 74 0 0 chr12 27027880 27027907 -116758548 + (CA)n Simple_repeat Simple_repeat 1 27 0 232 273 23 0 chr12 27028033 27028121 -116758334 + (CGGGG)n Simple_repeat Simple_repeat 1 90 0 22 0 0 0 chr12 27029439 27029461 -116756994 + GC_rich Low_complexity Low_complexity 1 22 0 208 358 13 7 chr12 27030445 27030596 -116755859 + T-rich Low_complexity Low_complexity 1 152 0 629 263 85 25 chr12 27030815 27031051 -116755404 - MIR SINE MIR 0 262 13 333 306 118 35 chr12 27031395 27031650 -116754805 + L3b LINE CR1 1281 1556 -27 388 255 68 57 chr12 27033575 27033767 -116752688 - MLT1J LTR MaLR -42 469 276 349 259 89 15 chr12 27034701 27034836 -116751619 - MIR SINE MIR -88 174 30 249 289 40 0 chr12 27035174 27035250 -116751205 - L2 LINE L2 -2 3270 3192 216 316 86 0 chr12 27036202 27036376 -116750079 + L2 LINE L2 2458 2646 -668 357 250 0 0 chr12 27036377 27036453 -116750002 - LTR33A LTR ERVL -2 521 446 254 306 9 28 chr12 27036663 27036771 -116749684 - MLT2E LTR ERVL -491 137 32 650 327 37 65 chr12 27036924 27037469 -116748986 + L2 LINE L2 2717 3247 -25 1881 142 51 12 chr12 27038900 27039231 -116747224 - MER2 DNA MER2_type 0 344 1 298 288 150 18 chr12 27039253 27039479 -116746976 + MIR SINE MIR 7 262 0 446 172 11 25 chr12 27039980 27040066 -116746389 + MLT2B1 LTR ERVL 1 81 -333 2142 124 0 13 chr12 27040066 27040372 -116746083 - AluSg SINE Alu -8 302 1 446 172 11 25 chr12 27040372 27040405 -116746050 + MLT2B1 LTR ERVL 81 113 -301 250 392 0 0 chr12 27040919 27041016 -116745439 + MIR SINE MIR 53 149 -59 25 65 0 0 chr12 27041340 27041386 -116745069 + AT_rich Low_complexity Low_complexity 1 46 0 1234 114 0 0 chr12 27041396 27041554 -116744901 - AluSp SINE Alu -26 287 130 2280 113 0 0 chr12 27041558 27041860 -116744595 - AluSc SINE Alu -7 302 1 286 291 81 0 chr12 27041933 27042019 -116744436 + MER5A DNA MER1_type 14 106 -83 1634 159 132 12 chr12 27042222 27042548 -116743907 - MLT1A1 LTR MaLR 0 365 1 225 255 0 0 chr12 27043085 27043132 -116743323 + (TG)n Simple_repeat Simple_repeat 1 47 0 37 23 0 0 chr12 27043313 27043357 -116743098 + AT_rich Low_complexity Low_complexity 1 44 0 404 308 35 24 chr12 27043556 27043725 -116742730 + MIR3 SINE MIR 36 206 -2 1954 106 77 0 chr12 27044127 27044401 -116742054 + AluSc SINE Alu 1 295 -14 1675 192 128 15 chr12 27044461 27044968 -116741487 + MLT1E1 LTR MaLR 1 650 -4 237 269 0 76 chr12 27044982 27045101 -116741354 - HAL1b LINE L1 -474 874 765 2205 104 0 7 chr12 27045101 27045398 -116741057 + AluSx SINE Alu 1 295 -17 674 236 35 31 chr12 27045421 27045650 -116740805 + MIR SINE MIR 6 235 -27 490 289 62 36 chr12 27046258 27046483 -116739972 + MIR SINE MIR 20 250 -12 199 244 0 0 chr12 27047160 27047201 -116739254 - L2 LINE L2 -16 3256 3216 815 159 19 13 chr12 27047256 27047413 -116739042 - MER34C LTR ERV1 -2 583 426 585 165 132 8 chr12 27047439 27047560 -116738895 - MER34C LTR ERV1 -449 136 1 2365 214 84 5 chr12 27047663 27048294 -116738161 + L1 LINE L1 2415 3095 -3051 244 197 0 0 chr12 27048313 27048379 -116738076 + L1 LINE L1 3217 3282 -2864 26635 141 13 16 chr12 27048380 27049171 -116737284 + L1PA8A LINE L1 5 797 -5649 1852 165 176 29 chr12 27049171 27049613 -116736842 + LTR22 LTR ERVK 1 507 -2 26635 141 13 16 chr12 27049613 27050045 -116736410 + L1PA8A LINE L1 797 1229 -5217 216 97 0 0 chr12 27050045 27050076 -116736379 + (CAA)n Simple_repeat Simple_repeat 3 33 0 26635 141 13 16 chr12 27050076 27052320 -116734135 + L1PA8A LINE L1 1229 3479 -2967 2218 105 3 3 chr12 27052320 27052616 -116733839 - AluY SINE Alu -15 296 1 26635 141 13 16 chr12 27052616 27055090 -116731365 + L1PA8A LINE L1 3479 5991 -455 271 270 48 40 chr12 27055724 27055850 -116730605 - MIR SINE MIR -65 197 71 407 239 68 21 chr12 27055973 27056114 -116730341 - MIR SINE MIR -26 182 33 1575 202 30 33 chr12 27056495 27056861 -116729594 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr12 27057562 27057583 -116728872 + AT_rich Low_complexity Low_complexity 1 21 0 651 267 48 0 chr12 27058565 27058771 -116727684 + L2 LINE L2 2832 3047 -266 617 189 11 179 chr12 27058855 27059141 -116727314 - MLT1D LTR MaLR -45 460 237 2428 87 0 0 chr12 27059409 27059707 -116726748 - AluSx SINE Alu -14 298 1 867 156 6 78 chr12 27059712 27059892 -116726563 - L1MD3 LINE L1 -419 7576 7410 318 185 0 0 chr12 27059894 27059948 -116726507 - MLT1D LTR MaLR -442 125 72 929 169 18 102 chr12 27059966 27060298 -116726157 - L1MC4 LINE L1 -7 8035 7732 593 305 37 71 chr12 27060301 27060655 -116725800 + L1MEc LINE L1 37 378 -6018 353 283 0 0 chr12 27060666 27060758 -116725697 - L1MC4a LINE L1 -1214 6594 6503 483 257 77 6 chr12 27061009 27061192 -116725263 - HAL1b LINE L1 -585 763 568 492 289 6 31 chr12 27061194 27061353 -116725102 + MER5B DNA MER1_type 4 158 -20 560 191 0 9 chr12 27061619 27061729 -116724726 - MER5A DNA MER1_type -80 109 1 264 263 41 88 chr12 27061730 27061901 -116724554 - HAL1b LINE L1 -879 469 307 317 299 0 23 chr12 27063282 27063369 -116723086 - L2 LINE L2 -4 3268 3184 898 274 29 29 chr12 27064037 27064314 -116722141 + MER102a DNA MER1_type 32 308 -22 284 232 0 0 chr12 27064838 27064907 -116721548 - L2 LINE L2 -217 3055 2987 2155 100 3 32 chr12 27065146 27065457 -116720998 + AluSg SINE Alu 1 302 -8 371 324 146 20 chr12 27066103 27066742 -116719713 - L2 LINE L2 -571 2743 2025 755 289 43 4 chr12 27067195 27067427 -116719028 - MIR SINE MIR -1 261 21 3353 100 40 2 chr12 27067649 27068100 -116718355 + MER1A DNA MER1_type 62 529 0 253 263 192 0 chr12 27068563 27068662 -116717793 + L2 LINE L2 3196 3313 0 1676 141 12 0 chr12 27070481 27070736 -116715719 + AluSx SINE Alu 44 301 -11 2136 119 10 0 chr12 27071165 27071467 -116714988 - AluSx SINE Alu -7 305 1 21 82 0 0 chr12 27071860 27071909 -116714546 + AT_rich Low_complexity Low_complexity 1 49 0 344 314 113 10 chr12 27073363 27073567 -116712888 + MIR SINE MIR 37 261 -1 28 0 0 0 chr12 27073749 27073777 -116712678 + AT_rich Low_complexity Low_complexity 1 28 0 519 198 78 17 chr12 27075422 27075538 -116710917 - L2 LINE L2 0 3313 3191 1078 224 43 14 chr12 27075871 27076152 -116710303 + MER63 DNA MER1_type 514 802 -258 874 169 17 34 chr12 27076313 27076491 -116709964 + MER63 DNA MER1_type 866 1040 -22 1217 302 65 9 chr12 27076491 27077108 -116709347 + L2 LINE L2 2438 3089 -224 628 223 40 14 chr12 27077145 27077293 -116709162 + MIR SINE MIR 90 241 -21 218 185 0 37 chr12 27077313 27077367 -116709088 + (TTA)n Simple_repeat Simple_repeat 2 53 0 700 253 33 0 chr12 27077373 27077555 -116708900 + L2 LINE L2 3123 3310 -3 276 294 65 0 chr12 27078262 27078354 -116708101 + L2 LINE L2 3142 3239 -33 324 213 128 121 chr12 27078515 27078656 -116707799 + MIR SINE MIR 20 161 -101 192 361 33 16 chr12 27079726 27079848 -116706607 - MIR SINE MIR -6 256 133 332 306 122 7 chr12 27080145 27080292 -116706163 - MIR SINE MIR -59 203 40 228 263 164 40 chr12 27080808 27080960 -116705495 - MIR SINE MIR -86 176 6 361 154 45 18 chr12 27082210 27082320 -116704135 + CT-rich Low_complexity Low_complexity 4 116 0 215 323 23 53 chr12 27083633 27083766 -116702689 + L3 LINE CR1 1247 1375 -202 227 294 44 0 chr12 27083828 27083896 -116702559 + L2 LINE L2 3202 3272 0 1039 249 88 53 chr12 27084674 27084819 -116701636 + L2 LINE L2 2553 2692 -621 2310 118 0 0 chr12 27084819 27085123 -116701332 + AluSx SINE Alu 1 304 -8 1039 249 88 53 chr12 27085123 27085656 -116700799 + L2 LINE L2 2692 3253 -60 2350 125 6 15 chr12 27085656 27085992 -116700463 - MER1B DNA MER1_type 0 337 5 1039 249 88 53 chr12 27085992 27086049 -116700406 + L2 LINE L2 3253 3307 -6 196 309 122 32 chr12 27086437 27086560 -116699895 - L3b LINE CR1 -229 1354 1221 375 23 0 0 chr12 27087027 27087071 -116699384 + (TG)n Simple_repeat Simple_repeat 2 45 0 1475 171 106 86 chr12 27087393 27087779 -116698676 - MSTD LTR MaLR 0 396 3 200 324 68 0 chr12 27087884 27087958 -116698497 - L2 LINE L2 -47 3225 3147 347 265 49 56 chr12 27088181 27088343 -116698112 + MER5A DNA MER1_type 1 161 -28 541 215 39 54 chr12 27089400 27089605 -116696850 + L1M4 LINE L1 4191 4392 -1754 287 158 287 40 chr12 27089993 27090094 -116696361 - MIR SINE MIR -132 130 5 24 100 0 0 chr12 27091442 27091522 -116694933 + GC_rich Low_complexity Low_complexity 1 80 0 335 225 153 27 chr12 27092716 27092827 -116693628 - L2 LINE L2 -3 3310 3186 704 275 74 85 chr12 27092977 27093495 -116692960 + L2 LINE L2 2841 3312 -1 184 100 100 0 chr12 27093594 27093624 -116692831 - L2 LINE L2 -21 3251 3219 180 0 0 0 chr12 27095890 27095910 -116690545 + (A)n Simple_repeat Simple_repeat 1 20 0 316 318 196 19 chr12 27096186 27096702 -116689753 + L2 LINE L2 2142 2748 -566 269 306 111 28 chr12 27096826 27096934 -116689521 + L2 LINE L2 2932 3048 -224 2273 104 3 3 chr12 27098860 27099157 -116687298 - AluSq SINE Alu -16 297 1 1410 187 154 26 chr12 27099175 27099480 -116686975 + MER2 DNA MER2_type 1 344 0 1017 164 25 35 chr12 27099647 27099848 -116686607 + MER3 DNA MER1_type 5 203 -6 21 0 0 0 chr12 27099893 27099914 -116686541 + AT_rich Low_complexity Low_complexity 1 21 0 2794 223 61 35 chr12 27100203 27101023 -116685432 + MER63C DNA MER1_type 1 841 -89 996 269 29 95 chr12 27101117 27101664 -116684791 + L2 LINE L2 2107 2617 -697 2171 143 121 5 chr12 27101676 27102055 -116684400 + MSTA LTR MaLR 6 428 0 310 318 118 9 chr12 27102267 27102487 -116683968 - L2 LINE L2 -113 3200 2957 4599 172 53 42 chr12 27103146 27103386 -116683069 + L1MA9 LINE L1 5081 5317 -995 2113 116 0 23 chr12 27103386 27103688 -116682767 + AluY SINE Alu 1 295 -16 4599 172 53 42 chr12 27103688 27104526 -116681929 + L1MA9 LINE L1 5317 6172 -140 342 0 0 0 chr12 27104526 27104564 -116681891 + (CA)n Simple_repeat Simple_repeat 1 38 0 4599 172 53 42 chr12 27104564 27104677 -116681778 + L1MA9 LINE L1 6172 6282 -30 1780 174 64 25 chr12 27105041 27105402 -116681053 - THE1C LTR MaLR 0 375 1 10419 124 19 35 chr12 27105402 27107006 -116679449 - THE1C-int LTR MaLR 0 1580 4 6722 76 4 29 chr12 27107048 27108293 -116678162 + L1PA5 LINE L1 4912 6135 -19 254 273 10 30 chr12 27108417 27108516 -116677939 + MER4A LTR ERV1 1 97 -567 284 311 38 56 chr12 27109311 27109603 -116676852 - L1ME4a LINE L1 -206 5915 5628 1482 210 69 3 chr12 27109603 27109922 -116676533 - MER58B DNA MER1_type 0 341 2 284 311 38 56 chr12 27109922 27109970 -116676485 - L1ME4a LINE L1 -493 5628 5581 2205 47 4 0 chr12 27110149 27110402 -116676053 - L1PA7 LINE L1 0 6154 5901 201 253 200 20 chr12 27110521 27110671 -116675784 - L3b LINE CR1 -194 1389 1213 792 195 0 0 chr12 27113375 27113498 -116672957 + FLAM_C SINE Alu 3 125 -18 2090 120 7 10 chr12 27113721 27114020 -116672435 + AluSx SINE Alu 1 298 -14 524 15 0 15 chr12 27114131 27114197 -116672258 + (GGGAA)n Simple_repeat Simple_repeat 5 69 0 249 284 27 0 chr12 27115072 27115146 -116671309 + MIR3 SINE MIR 132 207 -1 225 0 0 0 chr12 27115249 27115274 -116671181 + (T)n Simple_repeat Simple_repeat 1 25 0 293 260 110 50 chr12 27115576 27115676 -116670779 - L2 LINE L2 0 3272 3167 2059 124 3 13 chr12 27115720 27116035 -116670420 + AluSx SINE Alu 1 312 0 626 228 146 0 chr12 27116572 27116743 -116669712 + L1MEc LINE L1 1619 1814 -4582 1669 222 120 24 chr12 27116901 27116938 -116669517 - MLT2B1 LTR ERVL -2 518 486 526 71 24 0 chr12 27116938 27117022 -116669433 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 1669 222 120 24 chr12 27117022 27117452 -116669003 - MLT2B1 LTR ERVL -34 486 6 414 0 0 0 chr12 27117675 27117721 -116668734 + (TTA)n Simple_repeat Simple_repeat 2 47 0 269 300 12 0 chr12 27119244 27119324 -116667131 + MER20B DNA MER1_type 3 83 -700 5647 129 50 18 chr12 27119365 27120324 -116666131 + L1MA7 LINE L1 5296 6285 -6 275 301 49 32 chr12 27120354 27120477 -116665978 + MER20B DNA MER1_type 115 239 -544 828 198 45 0 chr12 27120483 27120640 -116665815 - AluJb SINE Alu -4 308 145 685 298 18 0 chr12 27120652 27120870 -116665585 + MER20B DNA MER1_type 295 516 -267 705 170 104 130 chr12 27120963 27121030 -116665425 + MER20B DNA MER1_type 518 585 -198 208 70 47 0 chr12 27121030 27121073 -116665382 + (TA)n Simple_repeat Simple_repeat 1 45 0 705 170 104 130 chr12 27121073 27121275 -116665180 + MER20B DNA MER1_type 585 780 -3 2299 136 15 0 chr12 27122198 27122530 -116663925 + MER4B-int LTR ERV1 6422 6758 0 3801 130 6 38 chr12 27122530 27123160 -116663295 + MER4B LTR ERV1 1 610 0 608 254 0 3 chr12 27123162 27123298 -116663157 + MLT1A1 LTR MaLR 243 365 0 391 290 57 16 chr12 27123372 27123496 -116662959 - L2 LINE L2 -2 3270 3142 1754 239 85 1 chr12 27124498 27125033 -116661422 + MER45B DNA AcHobo 2 611 -429 2296 38 21 17 chr12 27125233 27125523 -116660932 + AluY SINE Alu 1 291 -20 1973 185 7 3 chr12 27125636 27125944 -116660511 + AluSx SINE Alu 1 309 -3 498 130 11 33 chr12 27125945 27126037 -116660418 - MER4A LTR ERV1 -574 90 1 36 23 0 0 chr12 27126109 27126152 -116660303 + AT_rich Low_complexity Low_complexity 1 43 0 266 79 24 173 chr12 27126152 27126279 -116660176 - L1PA6 LINE L1 -6 6148 6041 360 236 42 52 chr12 27126492 27126704 -116659751 - L1PA6 LINE L1 -250 5904 5695 225 154 0 0 chr12 27128968 27129007 -116657448 + T-rich Low_complexity Low_complexity 2 40 0 6263 52 25 0 chr12 27129007 27129781 -116656674 - L1PA7 LINE L1 0 6154 5362 1663 72 18 0 chr12 27129777 27129998 -116656457 + L1PA7 LINE L1 5129 5353 -793 * 479 230 144 16 chr12 27130036 27130223 -116656232 + MIR SINE MIR 46 256 -6 22 35 0 0 chr12 27130986 27131015 -116655440 + AT_rich Low_complexity Low_complexity 1 29 0 192 40 0 0 chr12 27133142 27133167 -116653288 + (TC)n Simple_repeat Simple_repeat 2 26 0 371 278 185 56 chr12 27135700 27135899 -116650556 + MIR SINE MIR 6 236 -26 234 91 0 0 chr12 27135899 27135932 -116650523 + (ATGGTG)n Simple_repeat Simple_repeat 6 38 0 371 278 185 56 chr12 27135932 27135948 -116650507 + MIR SINE MIR 236 249 -13 189 0 0 0 chr12 27137245 27137266 -116649189 + (T)n Simple_repeat Simple_repeat 1 21 0 841 175 0 0 chr12 27141207 27141333 -116645122 - FLAM_C SINE Alu -7 126 1 189 0 0 0 chr12 27141522 27141543 -116644912 + (TG)n Simple_repeat Simple_repeat 2 22 0 1834 117 91 11 chr12 27141805 27142079 -116644376 - AluSx SINE Alu -11 301 6 665 263 11 34 chr12 27142352 27142527 -116643928 + MIR SINE MIR 63 233 -29 189 0 0 0 chr12 27144429 27144450 -116642005 + (T)n Simple_repeat Simple_repeat 1 21 0 241 408 58 25 chr12 27146094 27146214 -116640241 - L2 LINE L2 -5 3267 3144 324 226 11 158 chr12 27146369 27146546 -116639909 - MIR SINE MIR -1 261 111 2314 92 3 0 chr12 27146689 27146982 -116639473 + AluSq SINE Alu 4 297 -16 269 306 111 28 chr12 27148904 27149012 -116637443 - L2 LINE L2 -224 3048 2932 316 318 196 19 chr12 27149136 27149652 -116636803 - L2 LINE L2 -566 2748 2142 180 0 0 0 chr12 27149928 27149948 -116636507 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr12 27152338 27152361 -116634094 + AT_rich Low_complexity Low_complexity 1 23 0 333 289 97 9 chr12 27152518 27152632 -116633823 - MIR3 SINE MIR -2 206 83 806 265 11 52 chr12 27153150 27153422 -116633033 + MIR SINE MIR 1 261 -1 624 287 152 30 chr12 27155514 27156023 -116630432 - L2 LINE L2 -31 3282 2703 405 123 0 0 chr12 27156687 27156752 -116629703 + (TTCC)n Simple_repeat Simple_repeat 1 65 0 1427 230 89 67 chr12 27157419 27157476 -116628979 + MLT1D LTR MaLR 3 57 -448 3678 142 6 9 chr12 27157476 27158005 -116628450 - MER1A DNA MER1_type 0 527 1 1427 230 89 67 chr12 27158005 27158439 -116628016 + MLT1D LTR MaLR 57 505 0 1917 163 3 3 chr12 27158716 27159022 -116627433 - AluJo SINE Alu -2 310 5 291 211 97 79 chr12 27159163 27159277 -116627178 - HAL1 LINE L1 -148 2359 2244 557 279 12 17 chr12 27159279 27159451 -116627004 - MER5B DNA MER1_type -4 174 4 2384 88 0 7 chr12 27159601 27159898 -116626557 + AluSc SINE Alu 1 295 -14 1665 192 128 15 chr12 27159958 27160465 -116625990 + MLT1E1 LTR MaLR 1 650 -4 248 269 0 76 chr12 27160479 27160598 -116625857 - HAL1b LINE L1 -474 874 765 2189 104 0 7 chr12 27160598 27160895 -116625560 + AluSx SINE Alu 1 295 -17 744 236 35 31 chr12 27160918 27161147 -116625308 + MIR SINE MIR 6 235 -27 554 308 56 32 chr12 27161741 27161991 -116624464 + MIR SINE MIR 6 261 -1 213 244 0 0 chr12 27162657 27162698 -116623757 - L2 LINE L2 -16 3256 3216 830 159 19 13 chr12 27162753 27162910 -116623545 - MER34C LTR ERV1 -2 583 426 588 165 132 8 chr12 27162936 27163057 -116623398 - MER34C LTR ERV1 -449 136 1 2431 214 84 5 chr12 27163160 27163791 -116622664 + L1M4 LINE L1 2415 3095 -3051 248 197 0 0 chr12 27163810 27163876 -116622579 + L1M4 LINE L1 3217 3282 -2864 26789 140 12 14 chr12 27163877 27164668 -116621787 + L1PA8 LINE L1 5 797 -5690 1993 158 176 29 chr12 27164668 27165110 -116621345 + LTR22 LTR ERVK 1 507 -2 26789 140 12 14 chr12 27165110 27165542 -116620913 + L1PA8 LINE L1 797 1229 -5258 216 97 0 0 chr12 27165542 27165573 -116620882 + (CAA)n Simple_repeat Simple_repeat 3 33 0 26789 140 12 14 chr12 27165573 27167817 -116618638 + L1PA8 LINE L1 1229 3477 -3010 2200 105 3 3 chr12 27167817 27168113 -116618342 - AluY SINE Alu -15 296 1 26789 140 12 14 chr12 27168113 27171078 -116615377 + L1PA8 LINE L1 3477 6484 -3 3787 80 8 18 chr12 27171648 27172150 -116614305 + L1PA8A LINE L1 5634 6130 -1 2119 248 40 26 chr12 27172174 27172827 -116613628 + L1M4 LINE L1 3322 3983 -2163 * 6571 79 19 2 chr12 27172813 27173704 -116612751 + L1PA10 LINE L1 5263 6168 0 268 246 8 51 chr12 27173735 27173853 -116612602 + L1MB8 LINE L1 6066 6178 0 3042 242 108 87 chr12 27174484 27176453 -116610002 - L2 LINE L2 0 3313 1299 2218 98 0 32 chr12 27177124 27177485 -116608970 - AluSx SINE Alu 0 312 1 264 310 87 22 chr12 27177579 27177763 -116608692 + MIR SINE MIR 46 241 -21 195 42 0 0 chr12 27177899 27177923 -116608532 + (TA)n Simple_repeat Simple_repeat 1 24 0 2890 216 58 33 chr12 27177934 27178669 -116607786 - MER21B LTR ERV1 -7 856 103 276 53 0 0 chr12 27179914 27179952 -116606503 + (CA)n Simple_repeat Simple_repeat 2 39 0 1301 222 18 13 chr12 27180053 27180361 -116606094 + MER33 DNA MER1_type 1 302 -22 392 290 73 12 chr12 27180663 27180846 -116605609 + MIR3 SINE MIR 5 200 -8 274 310 11 0 chr12 27181085 27181172 -116605283 + GA-rich Low_complexity Low_complexity 3 90 0 1734 160 34 115 chr12 27182824 27183242 -116603213 - MLT1B LTR MaLR -3 387 4 2192 103 10 7 chr12 27184803 27185105 -116601350 + AluSg SINE Alu 1 303 -7 433 259 0 0 chr12 27185236 27185348 -116601107 + L2 LINE L2 3197 3308 -5 614 248 52 19 chr12 27187460 27187647 -116598808 + MIR SINE MIR 25 215 -47 296 48 24 0 chr12 27188360 27188402 -116598053 + (CAT)n Simple_repeat Simple_repeat 1 43 0 316 230 50 20 chr12 27188427 27188527 -116597928 - MIR SINE MIR -20 242 140 1658 160 20 24 chr12 27188528 27188844 -116597611 - AluJo SINE Alu 0 312 1 1818 114 21 17 chr12 27190560 27190850 -116595605 + AluSq SINE Alu 7 297 -16 553 244 14 0 chr12 27192629 27192775 -116593680 + Charlie3 DNA MER1_type 4 113 -2597 1363 19 0 0 chr12 27193083 27193239 -116593216 + L1PA2 LINE L1 6000 6155 0 391 278 83 0 chr12 27193239 27193347 -116593108 + MER5A DNA MER1_type 62 178 -11 23 0 0 0 chr12 27194421 27194444 -116592011 + AT_rich Low_complexity Low_complexity 1 23 0 2219 103 7 7 chr12 27195013 27195315 -116591140 - AluSg SINE Alu -8 302 1 34 24 0 0 chr12 27196182 27196223 -116590232 + GC_rich Low_complexity Low_complexity 1 41 0 614 248 52 19 chr12 27196755 27196942 -116589513 + MIR SINE MIR 25 215 -47 296 48 24 0 chr12 27197655 27197697 -116588758 + (CAT)n Simple_repeat Simple_repeat 1 43 0 316 230 50 20 chr12 27197722 27197822 -116588633 - MIR SINE MIR -20 242 140 1692 141 31 34 chr12 27197823 27198137 -116588318 - AluJo SINE Alu 0 312 3 537 282 47 66 chr12 27199238 27199407 -116587048 - L2 LINE L2 0 3313 3151 1828 174 38 0 chr12 27199407 27199700 -116586755 + AluJo SINE Alu 1 304 -8 537 282 47 66 chr12 27199700 27199849 -116586606 - L2 LINE L2 -162 3151 3001 571 329 68 4 chr12 27200002 27200251 -116586204 - L2 LINE L2 -575 2739 2475 559 305 140 25 chr12 27200408 27200772 -116585683 - MER115 DNA AcHobo -287 406 1 3132 163 21 16 chr12 27200884 27201453 -116585002 + L1PB4 LINE L1 5584 6155 -1 314 291 152 7 chr12 27203835 27203986 -116582469 + MER5A DNA MER1_type 9 181 -8 301 161 18 0 chr12 27204257 27204313 -116582142 + MER117 DNA MER1_type 60 116 -81 1858 200 62 62 chr12 27204377 27204891 -116581564 + MLT2B3 LTR ERVL 1 514 -40 206 207 17 0 chr12 27204958 27205016 -116581439 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 334 140 0 0 chr12 27205016 27205066 -116581389 + MLT2B3 LTR ERVL 464 513 -7 760 177 0 15 chr12 27205412 27205542 -116580913 - FLAM_A SINE Alu -5 128 1 203 358 33 8 chr12 27205720 27205840 -116580615 + MIR SINE MIR 5 127 -135 189 196 0 22 chr12 27206088 27206134 -116580321 + L3 LINE CR1 1528 1572 -5 1710 193 50 14 chr12 27206464 27206822 -116579633 + MLT1B LTR MaLR 20 390 0 207 171 0 0 chr12 27209006 27209041 -116577414 + (CAGGC)n Simple_repeat Simple_repeat 2 36 0 218 353 128 5 chr12 27210230 27210417 -116576038 - MIR SINE MIR -6 256 47 806 295 69 49 chr12 27211961 27212724 -116573731 - L2 LINE L2 0 3313 2531 596 263 37 95 chr12 27212709 27213036 -116573419 + L2 LINE L2 2957 3264 -49 * 2297 100 7 0 chr12 27213048 27213347 -116573108 + AluSq SINE Alu 1 301 -12 268 277 43 21 chr12 27213362 27213456 -116572999 - L2 LINE L2 -783 2531 2436 593 251 57 11 chr12 27213457 27213632 -116572823 + HERV16 LTR ERVL 1754 1936 -3060 1369 339 32 11 chr12 27213640 27214266 -116572189 + HERV16 LTR ERVL 3016 3654 -2000 1378 332 46 18 chr12 27214300 27215034 -116571421 + HERV16 LTR ERVL 3758 4534 -1230 936 136 26 0 chr12 27215036 27215191 -116571264 + MER5A DNA MER1_type 1 159 -30 1883 92 18 25 chr12 27215201 27215483 -116570972 - L1MA2 LINE L1 -9 6295 6016 624 251 0 54 chr12 27215750 27215917 -116570538 - MER105 DNA DNA -40 164 7 371 378 0 0 chr12 27215926 27216082 -116570373 + HERV16 LTR ERVL 4729 4884 -880 5362 144 21 11 chr12 27216087 27216941 -116569514 - Tigger1 DNA MER2_type -1554 864 2 374 290 86 67 chr12 27217066 27217420 -116569035 - L1MC/D LINE L1 -413 5708 5397 2483 86 0 0 chr12 27217420 27217722 -116568733 - AluSc SINE Alu -7 302 1 374 290 86 67 chr12 27217722 27217856 -116568599 - L1MC/D LINE L1 -724 5397 5267 385 75 19 0 chr12 27217925 27217978 -116568477 + MSTB1 LTR MaLR 1 54 -378 329 220 289 38 chr12 27218330 27218489 -116567966 - MLT1L LTR MaLR -55 560 362 216 271 57 29 chr12 27219382 27219452 -116567003 - L2 LINE L2 0 3272 3201 257 270 54 0 chr12 27220980 27221054 -116565401 - L1MC4 LINE L1 -1337 6705 6628 342 337 128 0 chr12 27221098 27221285 -116565170 + LTR16A LTR ERVL 16 226 -224 232 162 0 0 chr12 27221416 27221453 -116565002 + LTR16A1 LTR ERVL 419 455 -2 1025 291 66 28 chr12 27221494 27221951 -116564504 + HERV16 LTR ERVL 74 547 -4449 213 94 0 0 chr12 27222006 27222038 -116564417 + (T)n Simple_repeat Simple_repeat 1 32 0 241 28 0 0 chr12 27222152 27222188 -116564267 - L1PA3 LINE L1 -1 6154 6119 2431 84 0 0 chr12 27222408 27222704 -116563751 - AluY SINE Alu -15 296 1 238 88 18 123 chr12 27223860 27223917 -116562538 - MER39 LTR ERV1 -143 564 514 286 311 118 52 chr12 27224622 27224834 -116561621 - MIR SINE MIR -6 256 31 2363 205 80 42 chr12 27225486 27226410 -116560045 + L1ME2 LINE L1 5127 6074 -90 729 79 0 0 chr12 27226410 27226511 -116559944 + (TG)n Simple_repeat Simple_repeat 2 102 0 11514 172 53 14 chr12 27226547 27227094 -116559361 + L1MB1 LINE L1 2874 3398 -2770 2394 167 15 20 chr12 27227094 27227490 -116558965 - MSTD LTR MaLR -2 394 1 11514 172 53 14 chr12 27227490 27229430 -116557025 + L1MB1 LINE L1 3398 5505 -663 207 0 0 0 chr12 27229430 27229453 -116557002 + (CA)n Simple_repeat Simple_repeat 2 24 0 11514 172 53 14 chr12 27229453 27230000 -116556455 + L1MB1 LINE L1 5505 6029 -139 2033 120 3 17 chr12 27230002 27230301 -116556154 - AluSx SINE Alu -5 307 13 1926 161 30 134 chr12 27230941 27231151 -116555304 + MSTB2 LTR MaLR 1 129 -328 2189 115 3 10 chr12 27231151 27231456 -116554999 - AluSp SINE Alu -8 305 3 1926 161 30 134 chr12 27231456 27231753 -116554702 + MSTB2 LTR MaLR 129 455 -2 211 246 18 18 chr12 27231758 27231815 -116554640 - MIR SINE MIR -180 82 26 * 230 362 135 29 chr12 27231813 27231947 -116554508 - L2 LINE L2 -2420 894 776 1023 148 28 0 chr12 27231947 27232123 -116554332 + L1MB3 LINE L1 6003 6183 0 230 362 135 29 chr12 27232123 27232447 -116554008 - L2 LINE L2 -2538 776 380 1407 202 145 26 chr12 27232447 27232799 -116553656 + MSTD LTR MaLR 3 396 0 230 362 135 29 chr12 27232799 27232822 -116553633 - L2 LINE L2 -2934 380 361 359 322 81 27 chr12 27233230 27233379 -116553076 - L2 LINE L2 0 3272 3116 1797 169 80 0 chr12 27233834 27234148 -116552307 - MER44D DNA MER2_type 0 609 1 2187 101 7 7 chr12 27234890 27235187 -116551268 + AluSq SINE Alu 1 297 -16 576 267 26 26 chr12 27235261 27235452 -116551003 + MIR3 SINE MIR 16 206 -2 544 281 90 24 chr12 27235947 27236177 -116550278 - MIR SINE MIR -19 243 4 965 200 6 0 chr12 27237256 27237421 -116549034 + AluJo SINE Alu 1 166 -146 428 256 0 0 chr12 27237421 27237499 -116548956 + AluSc SINE Alu 85 162 -147 1154 206 0 0 chr12 27237499 27237717 -116548738 + AluJo SINE Alu 85 302 -10 953 182 0 6 chr12 27240051 27240210 -116546245 + AluJb SINE Alu 131 288 -24 250 285 170 63 chr12 27240702 27241085 -116545370 + LTR67 LTR ERVL 122 545 -12 702 265 78 0 chr12 27241391 27241557 -116544898 - MER63A DNA MER1_type -31 179 1 197 273 45 30 chr12 27241611 27241677 -116544778 - MIR SINE MIR -102 106 40 2356 87 7 0 chr12 27242541 27242840 -116543615 + AluSx SINE Alu 1 301 -11 2124 113 30 13 chr12 27243210 27243512 -116542943 - AluSp SINE Alu -5 308 2 952 180 73 22 chr12 27243518 27243696 -116542759 + MER5A DNA MER1_type 3 189 0 28312 128 20 69 chr12 27244795 27250064 -116536391 - L1P LINE L1 -1136 5010 1 1743 178 14 0 chr12 27250099 27250392 -116536063 + AluJb SINE Alu 1 297 -15 187 327 115 9 chr12 27251997 27252110 -116534345 + MIR SINE MIR 22 146 -116 892 291 105 25 chr12 27252285 27252811 -116533644 + L1ME4a LINE L1 5538 6105 -16 1100 273 58 81 chr12 27253816 27254149 -116532306 - L2 LINE L2 -15 3298 2976 2193 121 0 31 chr12 27254149 27254471 -116531984 + AluSx SINE Alu 1 312 0 1100 273 58 81 chr12 27254471 27254570 -116531885 - L2 LINE L2 -337 2976 2876 365 275 231 0 chr12 27254590 27254750 -116531705 - L2 LINE L2 -568 2746 2550 1462 231 20 3 chr12 27254768 27255066 -116531389 + MER82 DNA MER2_type 348 650 -3 763 281 148 75 chr12 27255079 27255565 -116530890 - L2 LINE L2 -980 2334 1885 2090 117 3 13 chr12 27255565 27255864 -116530591 + AluSx SINE Alu 1 296 -16 763 281 148 75 chr12 27255864 27255905 -116530550 - L2 LINE L2 -1429 1885 1848 2558 101 3 3 chr12 27255905 27256251 -116530204 - L1MA1 LINE L1 -4 6298 5953 763 281 148 75 chr12 27256251 27256391 -116530064 - L2 LINE L2 -1466 1848 1617 646 316 21 0 chr12 27256428 27256621 -116529834 - MIR SINE MIR -62 200 4 224 314 144 25 chr12 27257619 27257737 -116528718 - L2 LINE L2 0 3272 3141 380 224 88 41 chr12 27257780 27257927 -116528528 + MIR SINE MIR 64 217 -45 2975 87 30 2 chr12 27258464 27258857 -116527598 + MLT2A1 LTR ERVL 1 404 -40 265 68 68 136 chr12 27258892 27258951 -116527504 + MLT2A1 LTR ERVL 399 453 0 302 290 90 32 chr12 27259315 27259470 -116526985 + L2 LINE L2 3145 3308 -5 1641 206 45 22 chr12 27259603 27259958 -116526497 - MLT1A1 LTR MaLR -1 364 2 769 274 93 0 chr12 27260026 27260252 -116526203 + MIR SINE MIR 16 262 0 21 0 0 0 chr12 27260652 27260673 -116525782 + AT_rich Low_complexity Low_complexity 1 21 0 1996 121 4 0 chr12 27261834 27262106 -116524349 + AluSg SINE Alu 21 293 -17 396 0 0 0 chr12 27262110 27262154 -116524301 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 373 333 133 41 chr12 27262512 27262857 -116523598 + L2 LINE L2 1992 2368 -946 984 314 125 10 chr12 27263047 27263567 -116522888 - L3 LINE CR1 -672 905 326 334 277 110 27 chr12 27263750 27263976 -116522479 - L1ME4a LINE L1 -188 5933 5676 2008 185 0 36 chr12 27263976 27264333 -116522122 - MER2 DNA MER2_type 0 344 1 334 277 110 27 chr12 27264333 27264398 -116522057 - L1ME4a LINE L1 -445 5676 5618 1384 126 17 26 chr12 27264410 27264640 -116521815 + MER50 LTR ERV1 7 234 -500 * 1427 149 80 80 chr12 27264628 27264930 -116521525 + MER50 LTR ERV1 433 734 0 341 227 87 93 chr12 27265027 27265177 -116521278 - MLT1J2 LTR MaLR -30 420 272 1525 283 65 44 chr12 27265401 27266013 -116520442 + MLT2F LTR ERVL 37 661 -2 7623 41 7 0 chr12 27266066 27267354 -116519101 - L1PA5 LINE L1 -8 6146 4846 21 0 0 0 chr12 27269822 27269843 -116516612 + AT_rich Low_complexity Low_complexity 1 21 0 407 217 91 74 chr12 27274384 27274584 -116511871 - MIR SINE MIR -54 208 8 293 295 38 9 chr12 27275100 27275205 -116511250 + MER5A DNA MER1_type 11 118 -71 182 227 120 27 chr12 27275566 27275641 -116510814 - MIR SINE MIR -37 225 144 551 130 9 65 chr12 27275690 27275798 -116510657 + MSTB1 LTR MaLR 1 102 -330 22 0 0 0 chr12 27275798 27275820 -116510635 + GC_rich Low_complexity Low_complexity 1 22 0 684 194 6 44 chr12 27277069 27277229 -116509226 - MIR SINE MIR -30 232 79 463 287 163 27 chr12 27277795 27278344 -116508111 + L2 LINE L2 2680 3313 0 180 357 70 28 chr12 27278350 27278493 -116507962 - L2 LINE L2 -172 3100 2952 232 333 89 7 chr12 27278580 27278715 -116507740 - MIR SINE MIR -113 149 4 256 358 169 0 chr12 27278968 27279169 -116507286 - L2 LINE L2 -5 3267 3033 188 350 52 21 chr12 27279261 27279343 -116507112 - L2 LINE L2 -463 2851 2764 1733 169 44 0 chr12 27279343 27279638 -116506817 + AluSx SINE Alu 1 308 -4 188 350 52 21 chr12 27279638 27279652 -116506803 - L2 LINE L2 -550 2764 2752 194 33 67 0 chr12 27279652 27279682 -116506773 + GA-rich Low_complexity Low_complexity 4 35 0 192 357 66 29 chr12 27279691 27279935 -116506520 - L2 LINE L2 -541 2773 2521 1430 147 57 8 chr12 27280279 27280524 -116505931 - AluJb SINE Alu -24 288 32 305 301 0 0 chr12 27280530 27280613 -116505842 + L2 LINE L2 3225 3307 -6 296 260 164 34 chr12 27281622 27281768 -116504687 + MIR SINE MIR 88 252 -10 183 354 69 31 chr12 27281926 27282056 -116504399 - L2 LINE L2 -1 3271 3137 596 133 0 0 chr12 27282638 27282721 -116503734 + 5S rRNA rRNA 1 83 -38 376 218 79 0 chr12 27283856 27283957 -116502498 + MIR SINE MIR 89 197 -65 224 326 53 23 chr12 27284048 27284180 -116502275 - L2 LINE L2 -2 3311 3176 209 274 53 42 chr12 27284934 27285029 -116501426 + L2 LINE L2 3217 3312 -1 180 171 146 0 chr12 27285015 27285056 -116501399 + MIR3 SINE MIR 136 182 -26 * 2247 97 0 3 chr12 27285397 27285720 -116500735 + AluSg SINE Alu 1 310 0 1375 275 71 80 chr12 27286014 27286731 -116499724 - MER21B LTR ERV1 -124 739 29 1444 273 87 26 chr12 27286856 27287647 -116498808 + L2 LINE L2 2467 3313 0 542 257 53 26 chr12 27287747 27287899 -116498556 + MIR SINE MIR 9 164 -98 231 343 111 0 chr12 27288073 27288181 -116498274 + MIR3 SINE MIR 88 207 -1 274 192 0 0 chr12 27291853 27291905 -116494550 + MIR SINE MIR 47 98 -164 681 217 66 57 chr12 27291948 27292160 -116494295 - L2 LINE L2 0 3313 3100 870 87 0 39 chr12 27292589 27292716 -116493739 - L1PA8 LINE L1 -8 6164 6043 3603 109 26 43 chr12 27292831 27293364 -116493091 - MER1A DNA MER1_type 0 527 4 2263 78 17 3 chr12 27295143 27295436 -116491019 - AluSq SINE Alu -16 297 1 2155 163 21 0 chr12 27296919 27297256 -116489199 - MER2 DNA MER2_type 0 344 1 1932 163 0 3 chr12 27297809 27298110 -116488345 - AluSx SINE Alu -12 300 1 392 0 21 0 chr12 27298145 27298193 -116488262 + (TA)n Simple_repeat Simple_repeat 1 49 0 685 264 0 0 chr12 27300699 27300843 -116485612 - MIR SINE MIR -39 223 80 984 155 0 0 chr12 27300881 27301029 -116485426 + AluSg/x SINE Alu 141 288 -24 376 295 58 12 chr12 27302068 27302247 -116484208 + MIR SINE MIR 31 213 -49 302 301 154 0 chr12 27302385 27302528 -116483927 + MIR SINE MIR 86 250 -12 21 57 0 0 chr12 27303458 27303493 -116482962 + GC_rich Low_complexity Low_complexity 1 35 0 1568 185 3 20 chr12 27304209 27304501 -116481954 - AluJo SINE Alu -25 287 1 2146 80 0 0 chr12 27304532 27304795 -116481660 + AluSg SINE Alu 13 275 -35 240 331 121 13 chr12 27305719 27305876 -116480579 - MIR SINE MIR -4 258 85 423 38 0 0 chr12 27307474 27307527 -116478928 + (TG)n Simple_repeat Simple_repeat 2 54 0 687 226 16 0 chr12 27307741 27307865 -116478590 - FLAM_A SINE Alu -7 126 1 1628 190 61 28 chr12 27308045 27308439 -116478016 + L1ME2 LINE L1 5757 6163 -1 385 313 157 40 chr12 27308525 27308567 -116477888 + L2 LINE L2 2027 2063 -1251 1150 255 114 52 chr12 27308567 27309101 -116477354 - MLT1F1 LTR MaLR 0 567 1 385 313 157 40 chr12 27309101 27309358 -116477097 + L2 LINE L2 2063 2361 -953 376 313 57 72 chr12 27309391 27309809 -116476646 - L2 LINE L2 -1387 1927 1516 207 0 0 0 chr12 27310166 27310189 -116476266 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 322 311 28 19 chr12 27310399 27310505 -116475950 + L2 LINE L2 3153 3259 -13 842 275 9 0 chr12 27310959 27311170 -116475285 + MIR SINE MIR 14 226 -36 252 213 225 12 chr12 27312350 27312430 -116474025 + L2 LINE L2 3169 3265 -7 464 195 127 8 chr12 27313201 27313319 -116473136 - L2 LINE L2 -5 3267 3136 398 185 163 0 chr12 27313903 27313995 -116472460 + L2 LINE L2 3161 3267 -5 277 41 0 61 chr12 27314729 27314778 -116471677 + (GGGAA)n Simple_repeat Simple_repeat 4 49 0 188 361 19 9 chr12 27315146 27315254 -116471201 - MIR3 SINE MIR -85 123 15 454 310 43 43 chr12 27315268 27315523 -116470932 + MARNA DNA Mariner 296 550 -36 216 0 0 0 chr12 27317398 27317422 -116469033 + (A)n Simple_repeat Simple_repeat 1 24 0 525 299 98 61 chr12 27318042 27318450 -116468005 + L2 LINE L2 2848 3270 -2 219 69 0 0 chr12 27318969 27318998 -116467457 + (CA)n Simple_repeat Simple_repeat 2 30 0 730 244 74 11 chr12 27318998 27319174 -116467281 - MIR SINE MIR -74 188 2 548 347 28 16 chr12 27320313 27320564 -116465891 - L2 LINE L2 -508 2806 2553 2105 145 0 0 chr12 27321203 27321500 -116464955 + AluSx SINE Alu 1 297 -15 551 189 50 79 chr12 27321834 27322519 -116463936 + L1ME1 LINE L1 5187 5890 -288 2156 109 7 0 chr12 27322519 27322804 -116463651 + AluSx SINE Alu 1 287 -25 470 17 0 17 chr12 27322804 27322864 -116463591 + (GGAA)n Simple_repeat Simple_repeat 3 61 0 551 189 50 79 chr12 27322864 27323008 -116463447 + L1ME1 LINE L1 5888 6174 -4 235 311 40 74 chr12 27323659 27323807 -116462648 + HAL1 LINE L1 1 143 -2364 238 342 60 25 chr12 27324223 27324422 -116462033 + HAL1 LINE L1 825 1030 -1477 530 86 0 0 chr12 27324512 27324582 -116461873 + AluSc SINE Alu 233 302 -7 366 285 59 55 chr12 27324833 27325086 -116461369 + HAL1 LINE L1 2245 2498 -9 563 178 0 19 chr12 27325162 27325269 -116461186 + FLAM_A SINE Alu 34 138 -4 1941 200 97 16 chr12 27325489 27325973 -116460482 - Charlie1b DNA MER1_type 0 523 1 644 283 24 39 chr12 27326240 27326475 -116459980 + MIR SINE MIR 16 243 -19 24 0 0 0 chr12 27327737 27327761 -116458694 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr12 27328331 27328352 -116458103 + AT_rich Low_complexity Low_complexity 1 21 0 2040 150 3 0 chr12 27329108 27329408 -116457047 - AluJb SINE Alu -11 301 1 4239 16 4 0 chr12 27329537 27330042 -116456413 - L1PA2 LINE L1 -141 6014 5508 * 12351 22 0 0 chr12 27330036 27331552 -116454903 + L1P LINE L1 3888 5403 -743 429 179 0 13 chr12 27331552 27331630 -116454825 - MER5A DNA MER1_type -111 78 2 247 302 35 0 chr12 27331774 27331860 -116454595 - MIR SINE MIR -2 260 172 794 216 93 10 chr12 27332224 27332418 -116454037 + MER63A DNA MER1_type 1 210 0 209 319 101 0 chr12 27332721 27332790 -116453665 - L2 LINE L2 -48 3224 3149 24 67 0 0 chr12 27333053 27333098 -116453357 + AT_rich Low_complexity Low_complexity 1 45 0 384 305 106 21 chr12 27333270 27333411 -116453044 + MIR SINE MIR 1 153 -109 646 233 67 22 chr12 27333895 27334075 -116452380 - L2 LINE L2 -6 3307 3120 257 210 136 0 chr12 27334427 27334508 -116451947 + MIR SINE MIR 51 142 -120 279 274 108 0 chr12 27336911 27337013 -116449442 - MIR SINE MIR -55 207 95 260 291 0 12 chr12 27337052 27337138 -116449317 + L1ME3A LINE L1 6 90 -6029 233 225 56 28 chr12 27337224 27337295 -116449160 + L1ME3A LINE L1 499 571 -5548 249 128 0 0 chr12 27337340 27337387 -116449068 + (GA)n Simple_repeat Simple_repeat 2 48 0 890 203 66 85 chr12 27337417 27337840 -116448615 + L1MC5 LINE L1 7503 7917 -44 514 282 61 71 chr12 27337857 27338046 -116448409 + L1ME3A LINE L1 562 751 -5368 396 0 0 0 chr12 27338046 27338090 -116448365 + (CA)n Simple_repeat Simple_repeat 2 45 0 514 282 61 71 chr12 27338090 27338493 -116447962 + L1ME3A LINE L1 751 1148 -4971 341 314 70 46 chr12 27338753 27339381 -116447074 + L1ME3A LINE L1 4573 5215 -914 372 268 150 0 chr12 27339422 27339575 -116446880 + L1ME3A LINE L1 5263 5438 -707 329 298 61 53 chr12 27339583 27339858 -116446597 + L1ME3A LINE L1 5491 5689 -415 1921 136 17 31 chr12 27339878 27340172 -116446283 - AluJb SINE Alu -22 290 1 301 260 58 143 chr12 27340174 27340482 -116445973 + L1ME3A LINE L1 5760 6041 -112 1496 210 33 46 chr12 27343802 27344197 -116442258 + MLT1B LTR MaLR 1 390 0 219 180 60 20 chr12 27344511 27344561 -116441894 + L3 LINE CR1 1516 1567 -10 1741 130 80 44 chr12 27344679 27345041 -116441414 + THE1C LTR MaLR 1 375 0 207 286 0 14 chr12 27345233 27345303 -116441152 + A-rich Low_complexity Low_complexity 2 70 0 3981 123 14 2 chr12 27345643 27346268 -116440187 + MER41B LTR ERV1 3 635 0 2237 102 0 3 chr12 27346269 27346562 -116439893 - AluSg SINE Alu -17 293 2 855 180 73 22 chr12 27346568 27346746 -116439709 + MER5A DNA MER1_type 3 189 0 757 158 8 0 chr12 27348315 27348435 -116438020 - FLAM_C SINE Alu -22 121 1 1181 238 69 89 chr12 27348695 27349346 -116437109 + MER21B LTR ERV1 98 735 -128 2846 13 0 0 chr12 27349693 27350004 -116436451 + AluY SINE Alu 1 311 0 618 321 186 14 chr12 27350341 27350771 -116435684 + L2 LINE L2 2809 3312 -1 349 322 142 11 chr12 27350992 27351175 -116435280 + MIR SINE MIR 18 224 -38 221 171 24 0 chr12 27353175 27353216 -116433239 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 198 357 102 10 chr12 27353226 27353324 -116433131 + L2 LINE L2 3158 3264 -8 2038 160 0 0 chr12 27354212 27354518 -116431937 + AluSx SINE Alu 1 306 -6 289 176 0 0 chr12 27354663 27354714 -116431741 + MSTB LTR MaLR 1 51 -375 203 147 0 0 chr12 27354732 27354766 -116431689 - MIR SINE MIR -111 151 118 2435 157 36 7 chr12 27354766 27355180 -116431275 + MSTB LTR MaLR 1 426 0 2088 99 0 44 chr12 27355290 27355625 -116430830 - AluY SINE Alu 0 322 1 235 331 115 34 chr12 27356495 27356764 -116429691 + L2 LINE L2 1890 2180 -1134 218 312 84 59 chr12 27356851 27357053 -116429402 - MIR SINE MIR -40 222 16 1247 134 51 51 chr12 27361477 27361694 -116424761 - AluJb SINE Alu -10 302 86 2056 222 29 2 chr12 27361853 27362308 -116424147 + L2 LINE L2 2335 2801 -513 455 146 45 0 chr12 27362310 27362399 -116424056 - MER53 DNA DNA 0 189 97 719 333 35 32 chr12 27362413 27362761 -116423694 + L2 LINE L2 2804 3152 -161 419 282 40 20 chr12 27362912 27363061 -116423394 + L2 LINE L2 3162 3313 0 3642 154 45 11 chr12 27363086 27363782 -116422673 + L1MB8 LINE L1 5456 6174 -4 180 131 33 16 chr12 27363786 27363847 -116422608 + A-rich Low_complexity Low_complexity 4 65 0 267 333 17 47 chr12 27364217 27364361 -116422094 - MIR SINE MIR -51 157 17 189 0 0 0 chr12 27364546 27364567 -116421888 + (TTC)n Simple_repeat Simple_repeat 2 22 0 2359 100 7 3 chr12 27364570 27364880 -116421575 - AluSx SINE Alu -1 311 1 517 264 188 4 chr12 27365076 27365315 -116421140 + L2 LINE L2 2188 2470 -844 251 260 40 90 chr12 27365545 27365645 -116420810 + L2 LINE L2 3219 3313 0 192 377 19 19 chr12 27365663 27365769 -116420686 - L2 LINE L2 -780 2534 2429 23 68 0 0 chr12 27366562 27366606 -116419849 + AT_rich Low_complexity Low_complexity 1 44 0 451 344 49 9 chr12 27367066 27367290 -116419165 - MIR SINE MIR -6 256 24 317 303 151 37 chr12 27368806 27369024 -116417431 + MIR SINE MIR 7 249 -13 696 323 101 63 chr12 27369300 27370629 -116415826 + L2 LINE L2 1817 3205 -67 360 0 0 0 chr12 27371072 27371112 -116415343 + (TG)n Simple_repeat Simple_repeat 2 41 0 2258 110 0 0 chr12 27371155 27371456 -116414999 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr12 27372059 27372081 -116414374 + AT_rich Low_complexity Low_complexity 1 22 0 222 289 0 0 chr12 27372101 27372153 -116414302 + L2 LINE L2 3217 3268 -4 281 348 145 0 chr12 27372521 27372659 -116413796 - MIR3 SINE MIR -22 186 29 30 45 0 0 chr12 27373289 27373333 -116413122 + AT_rich Low_complexity Low_complexity 1 44 0 220 232 20 0 chr12 27373346 27373445 -116413010 + (TA)n Simple_repeat Simple_repeat 1 101 0 271 243 165 54 chr12 27373782 27373953 -116412502 + MIR3 SINE MIR 3 186 -59 2171 127 3 0 chr12 27373964 27374256 -116412199 + AluSx SINE Alu 3 295 -17 380 364 59 29 chr12 27375905 27376389 -116410066 - L2 LINE L2 -43 3229 2728 865 212 11 11 chr12 27376460 27376644 -116409811 + AluJo SINE Alu 120 303 -9 372 340 130 42 chr12 27376796 27377173 -116409282 - L2 LINE L2 -341 2973 2564 2337 122 0 0 chr12 27377859 27378171 -116408284 + AluSq SINE Alu 1 312 -1 309 234 0 85 chr12 27378244 27378338 -116408117 + MIR SINE MIR 176 261 -1 1796 128 0 0 chr12 27378734 27378991 -116407464 + AluSx SINE Alu 52 308 -4 28 29 0 0 chr12 27379091 27379126 -116407329 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chr12 27379437 27379463 -116406992 + (T)n Simple_repeat Simple_repeat 1 26 0 1091 140 45 0 chr12 27380318 27380497 -116405958 - MER20 DNA MER1_type -4 215 29 566 222 41 41 chr12 27380745 27380916 -116405539 + MIR SINE MIR 72 242 -20 660 335 56 42 chr12 27380917 27381275 -116405180 + L2 LINE L2 2910 3272 0 342 321 18 18 chr12 27382273 27382382 -116404073 + L3 LINE CR1 401 509 -1068 307 264 46 0 chr12 27382616 27382703 -116403752 - MER58 DNA MER1_type -124 91 1 198 372 47 14 chr12 27382913 27383061 -116403394 + L3 LINE CR1 816 968 -609 455 219 69 94 chr12 27383532 27383765 -116402690 - L3 LINE CR1 -205 1372 1146 219 396 19 9 chr12 27383899 27384005 -116402450 - MIR3 SINE MIR -87 121 15 354 23 0 0 chr12 27387060 27387103 -116399352 + (CA)n Simple_repeat Simple_repeat 2 44 0 260 288 0 14 chr12 27389922 27389995 -116396460 + MER5A DNA MER1_type 38 109 -80 25 51 0 0 chr12 27390122 27390161 -116396294 + AT_rich Low_complexity Low_complexity 1 39 0 1950 141 43 27 chr12 27390381 27390750 -116395705 + THE1C LTR MaLR 1 375 0 423 182 0 0 chr12 27390817 27390894 -116395561 + L1MA10 LINE L1 6256 6332 -2 458 305 86 10 chr12 27392498 27392695 -116393760 + MIR SINE MIR 13 224 -38 29 70 0 0 chr12 27392697 27392754 -116393701 + AT_rich Low_complexity Low_complexity 1 57 0 24 77 0 0 chr12 27392866 27392918 -116393537 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr12 27393982 27394004 -116392451 + AT_rich Low_complexity Low_complexity 1 22 0 212 205 26 8 chr12 27395113 27395230 -116391225 + (TTAA)n Simple_repeat Simple_repeat 1 119 0 299 197 24 39 chr12 27395252 27395379 -116391076 + (TTAA)n Simple_repeat Simple_repeat 1 125 0 385 364 40 11 chr12 27395449 27395625 -116390830 + MIR3 SINE MIR 16 196 -12 1396 79 0 0 chr12 27397588 27397765 -116388690 - AluSg/x SINE Alu -2 310 134 1854 172 0 3 chr12 27397765 27398068 -116388387 - AluSx SINE Alu -9 303 2 802 145 0 0 chr12 27398119 27398236 -116388219 - FLAM_C SINE Alu -10 133 17 23 33 0 0 chr12 27398272 27398302 -116388153 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr12 27398550 27398575 -116387880 + AT_rich Low_complexity Low_complexity 1 25 0 216 269 19 0 chr12 27398738 27398790 -116387665 - L2 LINE L2 -93 3220 3168 21 57 0 0 chr12 27399075 27399110 -116387345 + AT_rich Low_complexity Low_complexity 1 35 0 254 250 0 33 chr12 27399234 27399294 -116387161 + MER5A DNA MER1_type 27 84 -105 313 229 104 90 chr12 27399313 27399457 -116386998 + MIR SINE MIR 117 262 0 335 280 11 11 chr12 27399787 27399880 -116386575 + MIR3 SINE MIR 110 202 -6 349 247 86 0 chr12 27400406 27400487 -116385968 - MIR SINE MIR -14 248 161 21 0 0 0 chr12 27401264 27401285 -116385170 + AT_rich Low_complexity Low_complexity 1 21 0 192 468 8 0 chr12 27401611 27401735 -116384720 - L3b LINE CR1 -48 1535 1411 2213 102 0 6 chr12 27402873 27403186 -116383269 - AluY SINE Alu 0 311 1 30 45 0 0 chr12 27403574 27403618 -116382837 + AT_rich Low_complexity Low_complexity 1 44 0 249 264 59 26 chr12 27405755 27405868 -116380587 + MIR SINE MIR 29 143 -65 2048 105 14 0 chr12 27405897 27406183 -116380272 - AluSx SINE Alu -20 292 3 1679 101 3 5 chr12 27406184 27406517 -116379938 - L1P4 LINE L1 -664 5501 5170 34 0 0 0 chr12 27409257 27409291 -116377164 + AT_rich Low_complexity Low_complexity 1 34 0 720 191 0 0 chr12 27409793 27409924 -116376531 + FLAM_A SINE Alu 1 131 -2 2230 82 0 0 chr12 27410560 27410868 -116375587 + AluSg SINE Alu 1 308 0 4412 114 11 1 chr12 27410870 27411527 -116374928 + L1PA15 LINE L1 5490 6152 -13 32 26 0 0 chr12 27411721 27411760 -116374695 + AT_rich Low_complexity Low_complexity 1 39 0 577 309 97 47 chr12 27411929 27412802 -116373653 + L1MC4a LINE L1 3376 4292 -1854 413 279 90 33 chr12 27412812 27413056 -116373399 + L1MC4a LINE L1 5815 6072 -1736 722 223 211 57 chr12 27413167 27413777 -116372678 + LTR50 LTR ERVL 3 793 -2 21 0 0 0 chr12 27414271 27414292 -116372163 + AT_rich Low_complexity Low_complexity 1 21 0 201 333 63 18 chr12 27415123 27415234 -116371221 + L3 LINE CR1 1389 1504 -73 2590 227 146 13 chr12 27415273 27416091 -116370364 + L1MC4a LINE L1 6818 7743 -65 262 261 19 137 chr12 27416986 27417147 -116369308 - L2 LINE L2 -4 3309 3168 22 56 0 0 chr12 27417434 27417470 -116368985 + AT_rich Low_complexity Low_complexity 1 36 0 1987 100 0 0 chr12 27417584 27417854 -116368601 + AluSx SINE Alu 7 276 -36 211 271 0 17 chr12 27418002 27418061 -116368394 - L2 LINE L2 -5 3308 3251 188 297 78 0 chr12 27418437 27418501 -116367954 - L2 LINE L2 0 3272 3204 209 289 0 0 chr12 27421078 27421130 -116365325 + L2 LINE L2 3262 3313 0 73 62 0 0 chr12 27421212 27421341 -116365114 + AT_rich Low_complexity Low_complexity 1 129 0 184 282 0 0 chr12 27421996 27422035 -116364420 - L2 LINE L2 -12 3260 3222 2013 108 14 3 chr12 27422452 27422748 -116363707 - AluSc SINE Alu -10 299 1 32 43 0 0 chr12 27422944 27422990 -116363465 + AT_rich Low_complexity Low_complexity 1 46 0 436 273 39 23 chr12 27425316 27425444 -116361011 - L2 LINE L2 0 3313 3184 414 286 56 19 chr12 27427416 27427577 -116358878 + MLT1L LTR MaLR 112 278 -337 216 0 0 0 chr12 27427610 27427634 -116358821 + (CAA)n Simple_repeat Simple_repeat 2 25 0 395 298 90 34 chr12 27427689 27427965 -116358490 + MLT1L LTR MaLR 238 509 -2 452 312 196 3 chr12 27427981 27428282 -116358173 + L3 LINE CR1 766 1124 -453 283 314 192 12 chr12 27428547 27428719 -116357736 + L3 LINE CR1 1374 1576 -1 199 299 91 98 chr12 27428763 27429017 -116357438 - L2 LINE L2 -34 3238 2987 330 302 80 88 chr12 27429023 27429567 -116356888 + L2 LINE L2 2245 2761 -553 697 266 11 6 chr12 27431878 27432055 -116354400 - MIR SINE MIR -28 234 57 339 344 62 10 chr12 27432104 27432412 -116354043 + MARNA DNA Mariner 10 333 -253 3485 275 142 8 chr12 27432467 27433756 -116352699 - L2 LINE L2 -755 2559 1099 391 336 34 20 chr12 27434417 27434566 -116351889 + L2 LINE L2 3121 3271 -1 271 300 46 39 chr12 27436815 27436945 -116349510 - L2 LINE L2 -31 3282 3152 1520 229 39 30 chr12 27437216 27437679 -116348776 + MLT1C LTR MaLR 1 467 0 423 0 0 0 chr12 27438758 27438805 -116347650 + (CA)n Simple_repeat Simple_repeat 1 47 0 616 229 20 85 chr12 27439378 27439579 -116346876 + MER5A DNA MER1_type 2 189 0 1218 195 87 40 chr12 27439901 27440311 -116346144 + MSTB2 LTR MaLR 19 457 0 27 81 0 0 chr12 27440353 27440415 -116346040 + AT_rich Low_complexity Low_complexity 1 62 0 580 246 69 23 chr12 27441216 27441391 -116345064 + L2 LINE L2 3116 3298 -15 519 60 0 0 chr12 27441393 27441460 -116344995 + (TGGA)n Simple_repeat Simple_repeat 1 67 0 2114 105 0 11 chr12 27441585 27441902 -116344553 - AluSc SINE Alu 0 314 1 211 383 31 23 chr12 27442170 27442298 -116344157 + MIR SINE MIR 56 184 -78 234 0 0 0 chr12 27442741 27442767 -116343688 + (A)n Simple_repeat Simple_repeat 1 26 0 207 286 0 14 chr12 27443032 27443102 -116343353 + A-rich Low_complexity Low_complexity 2 70 0 4473 105 3 0 chr12 27443442 27444073 -116342382 + MER41B LTR ERV1 3 635 0 2186 102 3 3 chr12 27444074 27444367 -116342088 - AluSg SINE Alu -17 293 1 1052 264 139 20 chr12 27444377 27445050 -116341405 - L2 LINE L2 -8 3305 2540 491 281 89 55 chr12 27445104 27445339 -116341116 + MIR SINE MIR 9 251 -11 312 325 75 42 chr12 27445430 27445642 -116340813 - L2 LINE L2 -556 2758 2540 421 303 123 66 chr12 27446823 27447463 -116338992 + L2 LINE L2 1824 2500 -814 264 325 67 8 chr12 27448021 27448141 -116338314 + MER5A DNA MER1_type 7 133 -56 1066 211 0 19 chr12 27448737 27448945 -116337510 + MER58A DNA MER1_type 2 205 -19 531 208 0 0 chr12 27449018 27449143 -116337312 + (TA)n Simple_repeat Simple_repeat 1 125 0 1157 149 0 0 chr12 27449551 27449748 -116336707 - AluSx SINE Alu 0 312 116 254 61 0 0 chr12 27449748 27449781 -116336674 + MADE1 DNA Mariner 5 37 -43 915 117 0 0 chr12 27449789 27449909 -116336546 - AluSx SINE Alu -192 121 2 2319 109 0 0 chr12 27450062 27450365 -116336090 - AluSx SINE Alu -6 306 4 2221 92 7 0 chr12 27450781 27451109 -116335346 + AluSp SINE Alu 1 330 0 2628 148 144 11 chr12 27451498 27451963 -116334492 - MER1A DNA MER1_type 0 527 1 309 265 69 10 chr12 27452033 27452135 -116334320 - L2 LINE L2 -33 3280 3173 1850 270 62 8 chr12 27452294 27452905 -116333550 - L2 LINE L2 -939 2375 1732 219 235 0 0 chr12 27452982 27453033 -116333422 + CT-rich Low_complexity Low_complexity 2 52 0 289 208 26 26 chr12 27453279 27453356 -116333099 + L2 LINE L2 3188 3264 -49 209 231 19 19 chr12 27454085 27454137 -116332318 - MIR SINE MIR -56 152 101 336 83 0 0 chr12 27454742 27454790 -116331665 + (TC)n Simple_repeat Simple_repeat 1 48 0 461 331 131 38 chr12 27456316 27456660 -116329795 + L2 LINE L2 2891 3266 -6 643 319 100 24 chr12 27456740 27457151 -116329304 + L2 LINE L2 2871 3312 -1 806 284 43 30 chr12 27457186 27457489 -116328966 + MER102b DNA MER1_type 6 312 -29 237 293 0 0 chr12 27457910 27457992 -116328463 + L1M3 LINE L1 5350 5431 -740 1160 214 31 14 chr12 27458127 27458421 -116328034 + L1ME4a LINE L1 5566 5864 -257 2018 141 0 0 chr12 27460266 27460583 -116325872 - AluSx SINE Alu 0 317 1 2786 7 0 3 chr12 27461908 27462215 -116324240 + AluYa5 SINE Alu 1 306 -5 249 250 56 118 chr12 27463092 27463236 -116323219 - L2 LINE L2 -18 3295 3161 28 0 0 0 chr12 27463903 27463931 -116322524 + AT_rich Low_complexity Low_complexity 1 28 0 34 0 0 0 chr12 27466652 27466686 -116319769 + AT_rich Low_complexity Low_complexity 1 34 0 732 191 0 0 chr12 27467189 27467320 -116319135 + FLAM_A SINE Alu 1 131 -2 2386 79 0 16 chr12 27467956 27468271 -116318184 + AluSg SINE Alu 1 310 0 229 333 12 0 chr12 27470123 27470204 -116316251 + (TATG)n Simple_repeat Simple_repeat 1 82 0 312 319 44 69 chr12 27470546 27470750 -116315705 + MIR SINE MIR 3 201 -61 311 178 22 44 chr12 27471472 27471562 -116314893 + L1MC4 LINE L1 6615 6702 -1340 328 278 158 13 chr12 27471771 27472005 -116314450 + L1MC/D LINE L1 5549 5816 -1992 2286 81 0 13 chr12 27472113 27472411 -116314044 - AluY SINE Alu -17 294 1 32 43 0 0 chr12 27472607 27472653 -116313802 + AT_rich Low_complexity Low_complexity 1 46 0 432 273 39 23 chr12 27474980 27475108 -116311347 - L2 LINE L2 0 3313 3184 467 308 22 33 chr12 27476224 27476406 -116310049 - MIR SINE MIR -51 211 32 719 244 112 0 chr12 27476834 27477031 -116309424 + MIR SINE MIR 19 237 -25 192 379 57 36 chr12 27477759 27477899 -116308556 - L2 LINE L2 -3 3269 3127 2158 108 3 3 chr12 27477927 27478223 -116308232 + AluSq SINE Alu 1 296 -17 778 315 108 51 chr12 27478393 27478598 -116307857 - L2 LINE L2 -403 2911 2719 2585 65 0 0 chr12 27478598 27478905 -116307550 + AluY SINE Alu 1 307 -4 778 315 108 51 chr12 27478905 27479626 -116306829 - L2 LINE L2 -595 2719 1932 368 211 33 0 chr12 27479943 27480033 -116306422 - L1MA7 LINE L1 -448 5843 5751 1205 146 132 109 chr12 27480043 27480400 -116306055 + L1MA6 LINE L1 5927 6300 0 1510 119 13 0 chr12 27480858 27481094 -116305361 + L1MA5 LINE L1 6043 6281 -19 32 0 0 0 chr12 27481807 27481839 -116304616 + AT_rich Low_complexity Low_complexity 1 32 0 2254 123 0 0 chr12 27481884 27482192 -116304263 + AluSx SINE Alu 1 308 -4 635 210 6 34 chr12 27482846 27483022 -116303433 + L1MA10 LINE L1 6160 6330 -4 373 269 76 34 chr12 27483574 27483693 -116302762 - MIR SINE MIR -111 151 28 2291 55 0 4 chr12 27484083 27484357 -116302098 + AluY SINE Alu 26 298 -13 2446 66 0 3 chr12 27484542 27484846 -116301609 - AluY SINE Alu -4 307 5 2208 80 0 77 chr12 27485106 27485431 -116301024 - AluSx SINE Alu -10 302 3 756 213 13 13 chr12 27486236 27486386 -116300069 - FRAM SINE Alu -14 162 13 865 215 44 22 chr12 27486786 27487014 -116299441 + MIR SINE MIR 30 262 0 270 0 0 0 chr12 27490588 27490618 -116295837 + (CA)n Simple_repeat Simple_repeat 2 31 0 509 293 94 0 chr12 27490982 27491177 -116295278 + MIR SINE MIR 35 248 -14 782 274 114 52 chr12 27491769 27492363 -116294092 + L1ME3 LINE L1 5254 5884 -278 398 319 48 110 chr12 27492747 27493183 -116293272 + L2 LINE L2 2864 3272 0 850 119 0 16 chr12 27493496 27493622 -116292833 + FLAM_C SINE Alu 13 136 -7 1436 204 6 44 chr12 27493624 27493942 -116292513 + AluJo SINE Alu 1 306 -6 351 78 0 0 chr12 27495261 27495312 -116291143 + (TG)n Simple_repeat Simple_repeat 2 52 0 524 219 16 60 chr12 27495480 27495663 -116290792 + MER104 DNA MER2_type 4 178 -2 3656 143 40 47 chr12 27496073 27496813 -116289642 + L1MB7 LINE L1 5441 6175 -9 414 0 0 0 chr12 27497356 27497402 -116289053 + (TG)n Simple_repeat Simple_repeat 1 46 0 188 275 44 55 chr12 27498658 27498749 -116287706 + L2 LINE L2 2990 3079 -193 4643 75 0 90 chr12 27499461 27500191 -116286264 + MER4A LTR ERV1 1 664 0 2159 82 0 66 chr12 27500219 27500538 -116285917 - AluSg1 SINE Alu -11 298 1 270 0 0 0 chr12 27501146 27501176 -116285279 + (CA)n Simple_repeat Simple_repeat 1 30 0 1795 149 6 51 chr12 27503227 27503542 -116282913 + AluJb SINE Alu 3 303 -9 213 175 0 0 chr12 27503547 27503587 -116282868 + GA-rich Low_complexity Low_complexity 3 42 0 1181 57 6 0 chr12 27503593 27503751 -116282704 + (GGAAA)n Simple_repeat Simple_repeat 5 163 0 1052 30 8 0 chr12 27503896 27504028 -116282427 + (GGAAA)n Simple_repeat Simple_repeat 4 136 0 25 31 0 0 chr12 27504263 27504295 -116282160 + AT_rich Low_complexity Low_complexity 1 32 0 6003 106 8 20 chr12 27504885 27505219 -116281236 + L1PA15 LINE L1 5170 5506 -659 2076 125 0 0 chr12 27505219 27505527 -116280928 + AluSx SINE Alu 3 310 0 6003 106 8 20 chr12 27505527 27506186 -116280269 + L1PA15 LINE L1 5506 6152 -13 32 26 0 0 chr12 27506380 27506419 -116280036 + AT_rich Low_complexity Low_complexity 1 39 0 498 305 100 49 chr12 27506588 27507461 -116278994 + L1MC4a LINE L1 3376 4292 -1854 397 279 90 33 chr12 27507471 27507715 -116278740 + L1MC4a LINE L1 5815 6072 -1736 737 223 211 57 chr12 27507826 27508436 -116278019 + LTR50 LTR ERVL 3 793 -2 21 0 0 0 chr12 27508930 27508951 -116277504 + AT_rich Low_complexity Low_complexity 1 21 0 228 349 0 40 chr12 27509988 27510107 -116276348 + MER5B DNA MER1_type 2 127 -62 291 327 73 33 chr12 27510170 27510320 -116276135 + MIR SINE MIR 48 203 -59 1171 303 70 44 chr12 27513864 27514641 -116271814 - L2 LINE L2 -182 3131 2333 1481 282 36 39 chr12 27516511 27517099 -116269356 + L2 LINE L2 2382 2967 -347 414 244 136 99 chr12 27517248 27517469 -116268986 + MIR SINE MIR 29 257 -5 467 251 16 96 chr12 27517472 27517659 -116268796 + L2 LINE L2 3130 3301 -12 261 0 0 0 chr12 27519316 27519345 -116267110 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr12 27519657 27519687 -116266768 + AT_rich Low_complexity Low_complexity 1 30 0 1131 164 0 30 chr12 27520046 27520271 -116266184 - AluJb SINE Alu -16 296 1 2132 118 7 0 chr12 27520350 27520647 -116265808 - AluSx SINE Alu -13 299 1 1935 141 72 74 chr12 27521171 27521562 -116264893 + MLT1B LTR MaLR 1 390 0 1222 147 52 9 chr12 27522602 27522834 -116263621 + L1MA6 LINE L1 6052 6293 -7 514 325 120 38 chr12 27524083 27524843 -116261612 - L2 LINE L2 -2280 1034 213 514 279 16 0 chr12 27525756 27525885 -116260570 + MIR SINE MIR 1 131 -131 367 262 18 110 chr12 27526168 27526226 -116260229 + MIR SINE MIR 36 98 -164 2290 114 0 0 chr12 27526226 27526534 -116259921 - AluSg SINE Alu 0 310 3 367 262 18 110 chr12 27526534 27526639 -116259816 + MIR SINE MIR 98 184 -78 377 286 36 9 chr12 27527619 27527731 -116258724 - L2 LINE L2 -14 3299 3185 2198 104 0 29 chr12 27528687 27528996 -116257459 + AluSq SINE Alu 1 300 -13 626 236 89 108 chr12 27530026 27530285 -116256170 + MIR SINE MIR 7 260 -2 189 0 0 0 chr12 27530795 27530816 -116255639 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 183 42 0 0 chr12 27531017 27531041 -116255414 + (TG)n Simple_repeat Simple_repeat 1 24 0 299 113 19 0 chr12 27531043 27531096 -116255359 + GA-rich Low_complexity Low_complexity 2 55 0 1908 129 61 0 chr12 27531165 27531445 -116255010 + AluSx SINE Alu 1 297 -15 189 326 0 0 chr12 27532124 27532170 -116254285 - L3 LINE CR1 -11 1566 1521 417 110 0 0 chr12 27532220 27532293 -116254162 + (CA)n Simple_repeat Simple_repeat 1 73 0 197 274 113 0 chr12 27532519 27532581 -116253874 + MIR SINE MIR 82 150 -58 2142 160 47 89 chr12 27532792 27533285 -116253170 + MLT1D LTR MaLR 1 472 -33 432 200 10 11 chr12 27533793 27533897 -116252558 - L1MA4A LINE L1 -1 6274 6053 * 1582 132 26 32 chr12 27533894 27534204 -116252251 - L1MA4A LINE L1 -180 6123 5816 3987 166 8 6 chr12 27534210 27535403 -116251052 + L1MA4A LINE L1 4639 5833 -470 494 259 0 18 chr12 27535641 27535753 -116250702 + MIR3 SINE MIR 51 160 -48 194 344 0 22 chr12 27536174 27536264 -116250191 + L2 LINE L2 3226 3313 0 31 44 0 0 chr12 27537480 27537525 -116248930 + AT_rich Low_complexity Low_complexity 1 45 0 28 29 0 0 chr12 27537872 27537907 -116248548 + AT_rich Low_complexity Low_complexity 1 35 0 255 103 0 0 chr12 27538352 27538391 -116248064 + (TTATA)n Simple_repeat Simple_repeat 2 40 0 390 354 43 10 chr12 27538907 27539116 -116247339 - MIR SINE MIR -16 246 31 1722 147 41 17 chr12 27539851 27540143 -116246312 - AluJo SINE Alu -13 299 1 246 105 0 0 chr12 27540377 27540415 -116246040 - L1MA3 LINE L1 0 6305 6268 206 275 8 133 chr12 27540415 27540535 -116245920 - L3 LINE CR1 -300 1277 1173 228 250 33 17 chr12 27540540 27540600 -116245855 + L3 LINE CR1 1445 1505 -72 486 286 75 12 chr12 27540631 27540872 -116245583 + MER112 DNA MER1_type 1 256 0 2252 90 3 0 chr12 27541166 27541455 -116245000 + AluY SINE Alu 1 290 -21 1030 180 30 30 chr12 27541845 27542045 -116244410 + MER3 DNA MER1_type 1 200 -9 1074 250 0 0 chr12 27542062 27542282 -116244173 - MER58A DNA MER1_type -1 223 4 442 234 9 0 chr12 27542454 27542561 -116243894 - L1PB4 LINE L1 -2 6154 6047 261 0 0 0 chr12 27544228 27544257 -116242198 + (TG)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr12 27544434 27544454 -116242001 + (A)n Simple_repeat Simple_repeat 1 20 0 1926 147 0 10 chr12 27544458 27544758 -116241697 + AluSx SINE Alu 1 297 -15 776 265 40 16 chr12 27544891 27545140 -116241315 + MLT1L LTR MaLR 3 257 -358 509 268 16 0 chr12 27545303 27545430 -116241025 + MLT1L LTR MaLR 485 613 -2 349 325 97 34 chr12 27545924 27546130 -116240325 + MIR SINE MIR 40 258 -4 2019 294 145 25 chr12 27546166 27546951 -116239504 + L2 LINE L2 1915 2605 -708 1571 174 65 29 chr12 27546951 27547302 -116239153 - MLT1A1 LTR MaLR 0 365 2 2019 294 145 25 chr12 27547302 27547761 -116238694 + L2 LINE L2 2605 3309 -4 2256 164 0 18 chr12 27548608 27549005 -116237450 + MLT1B LTR MaLR 1 390 0 28 29 0 0 chr12 27549366 27549401 -116237054 + AT_rich Low_complexity Low_complexity 1 35 0 1818 27 0 5 chr12 27550370 27550590 -116235865 + L1PA5 LINE L1 5935 6153 -1 2023 105 51 0 chr12 27550951 27551227 -116235228 + AluSc SINE Alu 1 290 -19 239 234 0 0 chr12 27551350 27551397 -116235058 + (CA)n Simple_repeat Simple_repeat 2 48 0 698 296 74 49 chr12 27551594 27552110 -116234345 + HAL1 LINE L1 906 1449 -1058 1951 194 30 22 chr12 27552110 27552573 -116233882 + MLT1C LTR MaLR 1 467 0 698 296 74 49 chr12 27552573 27552830 -116233625 + HAL1 LINE L1 1449 1698 -809 617 69 11 0 chr12 27553127 27553214 -116233241 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 795 186 55 0 chr12 27553341 27553486 -116232969 + FAM SINE Alu 1 40 -9 407 35 0 35 chr12 27553486 27553544 -116232911 + (GGAGA)n Simple_repeat Simple_repeat 2 57 0 300 297 85 76 chr12 27553667 27553903 -116232552 + L1M2 LINE L1 896 1133 -5716 210 37 0 0 chr12 27553946 27553973 -116232482 + (GGGGA)n Simple_repeat Simple_repeat 5 31 0 744 87 11 62 chr12 27554003 27554378 -116232077 + (GGAGA)n Simple_repeat Simple_repeat 1 355 0 645 175 35 0 chr12 27554371 27554542 -116231913 + GA-rich Low_complexity Low_complexity 2 178 0 * 655 0 53 0 chr12 27555919 27556014 -116230441 + (TA)n Simple_repeat Simple_repeat 1 100 0 21 0 0 0 chr12 27556180 27556201 -116230254 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chr12 27556502 27556550 -116229905 + AT_rich Low_complexity Low_complexity 1 48 0 1824 172 3 7 chr12 27557257 27557565 -116228890 + AluJb SINE Alu 5 311 -1 445 247 215 11 chr12 27557634 27557913 -116228542 + L1ME LINE L1 5304 5650 -520 274 192 96 15 chr12 27557925 27558023 -116228432 + L1ME LINE L1 5720 5812 -309 185 384 58 17 chr12 27558133 27558305 -116228150 + L2 LINE L2 3094 3272 0 387 303 16 0 chr12 27559629 27559751 -116226704 + MIR SINE MIR 50 173 -89 719 150 18 5 chr12 27560216 27560487 -116225968 + LTR54B LTR ERV1 13 378 -132 365 54 18 0 chr12 27560808 27560864 -116225591 + LTR54 LTR ERV1 453 509 -1 402 21 0 0 chr12 27560975 27561022 -116225433 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 858 185 13 0 chr12 27561024 27561175 -116225280 - FRAM SINE Alu -30 146 1 311 206 0 0 chr12 27561179 27561242 -116225213 - AluJ/monomer SINE Alu -252 50 2 219 250 167 0 chr12 27561243 27561315 -116225140 + MIR SINE MIR 57 140 -122 786 296 153 19 chr12 27561336 27562094 -116224361 - L2 LINE L2 -6 3307 2446 451 359 68 29 chr12 27562090 27562371 -116224084 - L3 LINE CR1 -171 1406 1115 * 2238 184 21 2 chr12 27562578 27562996 -116223459 - MSTB LTR MaLR 0 426 1 230 228 9 79 chr12 27564210 27564324 -116222131 - L1ME4a LINE L1 -55 6066 5961 1782 168 62 47 chr12 27564780 27565167 -116221288 + MSTD LTR MaLR 1 393 -3 337 294 184 0 chr12 27565343 27565561 -116220894 - L1M4 LINE L1 -1559 4587 4330 403 267 158 0 chr12 27565828 27565974 -116220481 + MIR SINE MIR 84 252 -10 186 43 0 0 chr12 27566153 27566176 -116220279 + (TC)n Simple_repeat Simple_repeat 1 23 0 26 50 0 0 chr12 27566474 27566514 -116219941 + AT_rich Low_complexity Low_complexity 1 40 0 438 292 123 6 chr12 27567369 27567718 -116218737 - L1ME4a LINE L1 -119 6002 5613 21 36 0 0 chr12 27569091 27569119 -116217336 + AT_rich Low_complexity Low_complexity 1 28 0 295 292 0 0 chr12 27569490 27569555 -116216900 + L2 LINE L2 3208 3272 0 21 0 0 0 chr12 27569653 27569674 -116216781 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 27570203 27570227 -116216228 + AT_rich Low_complexity Low_complexity 1 24 0 186 71 0 0 chr12 27570260 27570288 -116216167 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 442 291 85 36 chr12 27570816 27571063 -116215392 + LTR33 LTR ERVL 105 363 -158 23 0 0 0 chr12 27571473 27571496 -116214959 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 27571760 27571782 -116214673 + AT_rich Low_complexity Low_complexity 1 22 0 404 262 53 109 chr12 27571988 27572290 -116214165 - L2 LINE L2 -63 3250 2966 326 310 106 0 chr12 27572301 27572414 -116214041 + L2 LINE L2 3139 3263 -9 1000 173 5 33 chr12 27572563 27572777 -116213678 + MER3 DNA MER1_type 1 208 -1 553 288 137 17 chr12 27573042 27573409 -116213046 - L1ME4a LINE L1 -14 6107 5785 1894 141 7 0 chr12 27573409 27573686 -116212769 - AluJb SINE Alu -33 279 1 553 288 137 17 chr12 27573686 27573989 -116212466 - L1ME4a LINE L1 -336 5785 5347 1399 193 30 4 chr12 27574134 27574404 -116212051 - AluJo SINE Alu -20 292 16 340 298 18 18 chr12 27574665 27574779 -116211676 - L2 LINE L2 -10 3303 3190 371 254 119 30 chr12 27574819 27574953 -116211502 + MER58B DNA MER1_type 196 341 0 31 0 0 0 chr12 27574984 27575015 -116211440 + AT_rich Low_complexity Low_complexity 1 31 0 1490 271 123 74 chr12 27575135 27575258 -116211197 - L2 LINE L2 0 3313 3197 189 74 0 0 chr12 27575258 27575285 -116211170 + (TA)n Simple_repeat Simple_repeat 2 28 0 1490 271 123 74 chr12 27575285 27576375 -116210080 - L2 LINE L2 -116 3197 2006 2172 123 0 0 chr12 27577488 27577798 -116208657 + AluSg SINE Alu 1 310 0 186 118 0 0 chr12 27577801 27577835 -116208620 + (TA)n Simple_repeat Simple_repeat 2 35 0 309 51 0 0 chr12 27577835 27577874 -116208581 + (CA)n Simple_repeat Simple_repeat 2 40 0 244 314 171 33 chr12 27577900 27578110 -116208345 + L3 LINE CR1 1045 1283 -294 7209 122 2 17 chr12 27578377 27578779 -116207676 + L1MA3 LINE L1 4765 5171 -1134 2283 112 0 0 chr12 27578779 27579084 -116207371 + AluSx SINE Alu 1 305 -7 7209 122 2 17 chr12 27579084 27579529 -116206926 + L1MA3 LINE L1 5171 5621 -684 2166 100 7 27 chr12 27579529 27579829 -116206626 + AluSx SINE Alu 1 294 -18 7209 122 2 17 chr12 27579829 27580545 -116205910 + L1MA3 LINE L1 5621 6305 0 206 175 50 0 chr12 27580623 27580663 -116205792 + L3 LINE CR1 1533 1574 -3 745 253 30 43 chr12 27580902 27581135 -116205320 - MIR SINE MIR -25 237 8 768 237 68 6 chr12 27581145 27581322 -116205133 + MER5A DNA MER1_type 1 188 -1 392 290 57 16 chr12 27583272 27583396 -116203059 + L2 LINE L2 3142 3270 -2 646 226 0 22 chr12 27583470 27583607 -116202848 - MLT1A1 LTR MaLR 0 365 232 4097 113 5 21 chr12 27583609 27584229 -116202226 - MER4B LTR ERV1 0 610 1 2313 121 15 0 chr12 27584229 27584561 -116201894 - MER4B-int LTR ERV1 0 6758 6422 198 118 0 0 chr12 27586228 27586262 -116200193 + (TCCCC)n Simple_repeat Simple_repeat 2 35 0 2338 109 0 0 chr12 27586680 27586983 -116199472 + AluSx SINE Alu 1 303 -9 214 312 21 0 chr12 27590752 27590845 -116195610 + CT-rich Low_complexity Low_complexity 1 95 0 289 311 6 44 chr12 27590913 27591093 -116195362 + CT-rich Low_complexity Low_complexity 6 178 0 243 300 27 9 chr12 27591184 27591294 -116195161 + T-rich Low_complexity Low_complexity 3 114 0 27 0 0 0 chr12 27591548 27591575 -116194880 + AT_rich Low_complexity Low_complexity 1 27 0 1772 210 22 27 chr12 27591587 27591992 -116194463 + L1MC4 LINE L1 6690 7092 -950 1854 249 89 8 chr12 27591993 27592608 -116193847 + L1MC4 LINE L1 7238 7902 -140 23 54 0 0 chr12 27592836 27592873 -116193582 + AT_rich Low_complexity Low_complexity 1 37 0 29 60 0 0 chr12 27593087 27593137 -116193318 + AT_rich Low_complexity Low_complexity 1 50 0 2157 113 20 0 chr12 27595129 27595430 -116191025 + AluSg SINE Alu 1 307 -3 28 0 0 0 chr12 27595430 27595458 -116190997 + AT_rich Low_complexity Low_complexity 1 28 0 1540 198 13 20 chr12 27596965 27597263 -116189192 + AluJo SINE Alu 1 296 -16 1139 48 0 28 chr12 27598114 27598259 -116188196 + AluY SINE Alu 1 141 -170 1503 75 0 20 chr12 27598259 27598460 -116187995 + AluY SINE Alu 109 305 -6 1079 187 17 31 chr12 27598707 27599001 -116187454 + SVA Other Other 432 721 -665 27 0 0 0 chr12 27599093 27599120 -116187335 + AT_rich Low_complexity Low_complexity 1 27 0 1833 154 10 22 chr12 27599643 27599955 -116186500 + AluJb SINE Alu 4 311 -1 202 191 48 0 chr12 27600819 27600861 -116185594 + GA-rich Low_complexity Low_complexity 5 48 0 26 30 0 0 chr12 27600868 27600901 -116185554 + AT_rich Low_complexity Low_complexity 1 33 0 325 131 33 0 chr12 27601836 27601897 -116184558 + Alu SINE Alu 240 302 0 360 325 82 19 chr12 27602938 27603144 -116183311 + L2 LINE L2 2543 2761 -553 261 57 0 0 chr12 27603870 27603905 -116182550 + (CA)n Simple_repeat Simple_repeat 1 35 0 262 274 116 0 chr12 27604403 27604498 -116181957 + L1ME3A LINE L1 44 149 -5970 539 320 96 58 chr12 27604701 27604819 -116181636 + L1ME3A LINE L1 561 673 -5446 3402 148 55 6 chr12 27604819 27605441 -116181014 + L1MC2 LINE L1 5680 6331 -13 539 320 96 58 chr12 27605441 27605875 -116180580 + L1ME3A LINE L1 673 1134 -4985 255 236 42 0 chr12 27605916 27605988 -116180467 + HAL1 LINE L1 1500 1574 -933 1319 261 135 70 chr12 27606018 27606434 -116180021 + L1ME3A LINE L1 2411 2799 -3330 2384 68 0 0 chr12 27606434 27606752 -116179703 - AluY SINE Alu 0 318 1 1319 261 135 70 chr12 27606752 27607035 -116179420 + L1ME3A LINE L1 2799 3062 -3067 2599 139 9 36 chr12 27607035 27607481 -116178974 + Tigger2a DNA MER2_type 1 434 0 1319 261 135 70 chr12 27607481 27607960 -116178495 + L1ME3A LINE L1 3062 3508 -2621 1032 146 0 0 chr12 27607960 27608138 -116178317 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 1319 261 135 70 chr12 27608138 27608590 -116177865 + L1ME3A LINE L1 3508 4150 -1979 506 283 167 60 chr12 27608736 27609366 -116177089 + L1ME3A LINE L1 5349 6045 -108 223 328 51 79 chr12 27609378 27609555 -116176900 + L3 LINE CR1 1405 1576 -1 435 273 179 41 chr12 27609631 27609972 -116176483 + MLT1L LTR MaLR 3 390 -225 484 327 73 0 chr12 27610161 27610326 -116176129 - MIR SINE MIR -70 192 16 261 196 22 0 chr12 27612925 27612971 -116173484 + MER81 DNA DNA 3 49 -65 2433 165 56 0 chr12 27613470 27613966 -116172489 + MER44D DNA MER2_type 15 605 0 6814 94 18 12 chr12 27614802 27615799 -116170656 + L1MA3 LINE L1 5303 6305 0 223 182 23 0 chr12 27615983 27616027 -116170428 + (CATA)n Simple_repeat Simple_repeat 2 46 0 1948 143 0 10 chr12 27616272 27616580 -116169875 - AluJb SINE Alu -7 305 1 388 242 62 16 chr12 27617645 27617773 -116168682 + MIR SINE MIR 10 143 -119 2361 45 0 0 chr12 27617954 27618244 -116168211 + L1PA7 LINE L1 5859 6148 -6 187 288 96 56 chr12 27619017 27619142 -116167313 - L2 LINE L2 -2 3270 3141 539 215 33 0 chr12 27619269 27619390 -116167065 - MER94 DNA DNA -7 127 3 1702 178 7 3 chr12 27619623 27619915 -116166540 + AluJo SINE Alu 4 296 -16 334 185 11 11 chr12 27619986 27620078 -116166377 + CT-rich Low_complexity Low_complexity 1 92 0 239 253 55 33 chr12 27620183 27620274 -116166181 - L2 LINE L2 -44 3228 3136 206 220 40 0 chr12 27620626 27620676 -116165779 + GA-rich Low_complexity Low_complexity 4 55 0 183 204 0 0 chr12 27620693 27620742 -116165713 + GA-rich Low_complexity Low_complexity 2 50 0 24 53 0 0 chr12 27621711 27621749 -116164706 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 27622052 27622073 -116164382 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 27623449 27623471 -116162984 + AT_rich Low_complexity Low_complexity 1 22 0 1991 154 3 0 chr12 27624920 27625225 -116161230 + AluSx SINE Alu 2 307 -5 22 35 0 0 chr12 27625642 27625671 -116160784 + AT_rich Low_complexity Low_complexity 1 29 0 644 286 111 47 chr12 27626440 27626782 -116159673 + L2 LINE L2 2941 3304 -9 22 56 0 0 chr12 27626971 27627007 -116159448 + AT_rich Low_complexity Low_complexity 1 36 0 620 211 23 103 chr12 27628616 27628877 -116157578 - L1ME2 LINE L1 -1 6163 5924 1160 320 181 30 chr12 27628887 27629773 -116156682 + L3 LINE CR1 534 1552 -25 4501 35 2 0 chr12 27629786 27630327 -116156128 - L1PA4 LINE L1 0 6155 5614 499 116 0 42 chr12 27630608 27630703 -116155752 + L1PA10 LINE L1 6078 6168 0 234 331 69 29 chr12 27631803 27631978 -116154477 + MIR SINE MIR 47 228 -34 22 35 0 0 chr12 27632520 27632549 -116153906 + AT_rich Low_complexity Low_complexity 1 29 0 1545 235 67 0 chr12 27632577 27632922 -116153533 + MSTD LTR MaLR 1 368 -28 358 149 62 40 chr12 27633145 27633254 -116153201 + LTR16A LTR ERVL 1 109 -341 1747 176 8 41 chr12 27633255 27633618 -116152837 + MLT1A1 LTR MaLR 15 365 0 3134 185 32 112 chr12 27633618 27634585 -116151870 + MLT1A1-int LTR MaLR 1 887 -848 914 143 6 40 chr12 27634689 27634751 -116151704 + MLT1A1 LTR MaLR 197 260 -105 2725 94 3 0 chr12 27634751 27635114 -116151341 - THE1B LTR MaLR 0 364 1 914 143 6 40 chr12 27635114 27635226 -116151229 + MLT1A1 LTR MaLR 260 365 0 840 247 148 0 chr12 27635232 27635515 -116150940 + LTR16A LTR ERVL 126 450 0 222 191 0 0 chr12 27636259 27636306 -116150149 + T-rich Low_complexity Low_complexity 1 47 0 186 328 0 31 chr12 27636515 27636579 -116149876 - MIR3 SINE MIR -24 184 123 1261 212 62 58 chr12 27639386 27639508 -116146947 - L1MC4 LINE L1 0 8042 7922 348 43 0 0 chr12 27639508 27639554 -116146901 + (CA)n Simple_repeat Simple_repeat 1 46 0 1261 212 62 58 chr12 27639554 27639883 -116146572 - L1MC4 LINE L1 -120 7922 7589 247 222 200 0 chr12 27639909 27639999 -116146456 + L2 LINE L2 2667 2774 -540 617 37 0 12 chr12 27640078 27640159 -116146296 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 186 43 0 0 chr12 27640179 27640202 -116146253 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 409 294 9 0 chr12 27640264 27640373 -116146082 + L2 LINE L2 3204 3313 0 2129 151 16 16 chr12 27640549 27640934 -116145521 + L1MC1 LINE L1 5940 6324 -9 381 315 19 56 chr12 27641428 27641644 -116144811 - HAL1b LINE L1 -1094 254 47 661 323 74 15 chr12 27642829 27643232 -116143223 + LTR16A LTR ERVL 17 443 -7 445 324 91 43 chr12 27643265 27643475 -116142980 - MIR SINE MIR -30 232 13 2342 99 10 0 chr12 27643553 27643855 -116142600 - AluSc SINE Alu -4 305 1 229 35 0 0 chr12 27643952 27643981 -116142474 + Alu SINE Alu 176 204 -95 1629 211 87 24 chr12 27644946 27645362 -116141093 + MLT1F1 LTR MaLR 126 567 0 2541 65 0 0 chr12 27645648 27645958 -116140497 + AluY SINE Alu 1 310 -1 338 243 243 13 chr12 27646241 27646393 -116140062 + MIR SINE MIR 74 260 -2 27 49 0 0 chr12 27648523 27648564 -116137891 + AT_rich Low_complexity Low_complexity 1 41 0 441 242 88 46 chr12 27648963 27649164 -116137291 + MIR SINE MIR 3 206 -56 619 266 64 16 chr12 27650317 27650619 -116135836 - L2 LINE L2 -264 3049 2731 476 210 281 0 chr12 27652562 27652729 -116133726 + MIR SINE MIR 36 249 -13 1793 176 10 3 chr12 27652988 27653284 -116133171 - AluJo SINE Alu -12 300 3 23 54 0 0 chr12 27655003 27655040 -116131415 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr12 27655052 27655075 -116131380 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 27655101 27655122 -116131333 + AT_rich Low_complexity Low_complexity 1 21 0 1070 223 173 60 chr12 27655675 27656160 -116130295 + MLT1F LTR MaLR 3 542 0 337 55 55 0 chr12 27656424 27656479 -116129976 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 23 33 0 0 chr12 27658026 27658056 -116128399 + AT_rich Low_complexity Low_complexity 1 30 0 37 0 0 21 chr12 27659142 27659154 -116127301 + AT_rich Low_complexity Low_complexity 1 12 -35 1708 168 14 14 chr12 27659154 27659446 -116127009 + AluJb SINE Alu 1 292 -20 37 0 0 21 chr12 27659446 27659481 -116126974 + AT_rich Low_complexity Low_complexity 12 47 0 244 259 32 55 chr12 27659543 27659763 -116126692 + L1MEd LINE L1 1024 1238 -4881 42503 35 2 1 chr12 27659873 27666025 -116120430 + L1PA3 LINE L1 1 6155 0 241 301 65 8 chr12 27666069 27666192 -116120263 + HAL1 LINE L1 1494 1623 -884 2396 88 0 0 chr12 27666195 27666491 -116119964 + AluSx SINE Alu 5 300 -12 2285 120 0 0 chr12 27666510 27666809 -116119646 + AluSx SINE Alu 1 299 -13 309 357 93 0 chr12 27666811 27666951 -116119504 + HAL1 LINE L1 1617 1769 -738 23 54 0 0 chr12 27667069 27667106 -116119349 + AT_rich Low_complexity Low_complexity 1 37 0 1924 160 3 3 chr12 27667633 27667933 -116118522 + AluJb SINE Alu 1 300 -12 400 264 47 42 chr12 27668009 27668202 -116118253 + L1MEd LINE L1 2199 2392 -3737 219 265 45 114 chr12 27668276 27668408 -116118047 + L2 LINE L2 3146 3268 -4 209 218 23 46 chr12 27669988 27670075 -116116380 + T-rich Low_complexity Low_complexity 6 90 0 24 53 0 0 chr12 27670708 27670746 -116115709 + AT_rich Low_complexity Low_complexity 1 38 0 1001 264 37 48 chr12 27670947 27671326 -116115129 - L1ME3A LINE L1 -275 5895 5521 322 329 160 9 chr12 27671431 27671650 -116114805 + MIR SINE MIR 9 260 -2 22 35 0 0 chr12 27673002 27673031 -116113424 + AT_rich Low_complexity Low_complexity 1 29 0 1035 206 17 0 chr12 27673180 27673360 -116113095 + MER5A DNA MER1_type 2 184 -5 2795 201 52 7 chr12 27673451 27674023 -116112432 - MER82 DNA MER2_type 0 653 56 572 229 24 36 chr12 27674586 27674752 -116111703 - MER5B DNA MER1_type -14 164 1 1846 184 0 3 chr12 27675631 27675940 -116110515 + AluJb SINE Alu 3 310 -2 883 286 130 38 chr12 27675981 27676428 -116110027 + L2 LINE L2 2824 3311 -2 32 57 0 0 chr12 27676471 27676524 -116109931 + AT_rich Low_complexity Low_complexity 1 53 0 27 0 0 0 chr12 27676708 27676735 -116109720 + AT_rich Low_complexity Low_complexity 1 27 0 1684 176 3 17 chr12 27678359 27678655 -116107800 - AluJb SINE Alu -20 292 1 235 235 0 24 chr12 27678819 27678904 -116107551 + GA-rich Low_complexity Low_complexity 1 83 0 777 189 18 0 chr12 27679268 27679437 -116107018 + L1MA9 LINE L1 6106 6277 -35 1990 150 10 13 chr12 27679450 27679763 -116106692 + AluJb SINE Alu 1 312 0 241 167 0 30 chr12 27679764 27679830 -116106625 + GA-rich Low_complexity Low_complexity 4 67 0 776 201 43 5 chr12 27682535 27682719 -116103736 + MER20 DNA MER1_type 1 191 -28 1246 153 30 0 chr12 27683736 27683939 -116102516 + MER2 DNA MER2_type 2 210 -135 353 323 19 37 chr12 27684171 27684332 -116102123 - MIR SINE MIR -46 216 59 2687 153 91 6 chr12 27684395 27684925 -116101530 + MER90 LTR ERV1 1 575 0 1876 126 59 0 chr12 27687842 27688163 -116098292 + AluSx SINE Alu 1 337 0 790 227 34 17 chr12 27688612 27688892 -116097563 + L1ME2 LINE L1 5722 6010 -154 280 347 32 8 chr12 27689651 27689775 -116096680 + MIR3 SINE MIR 31 157 -51 21 0 0 0 chr12 27690230 27690251 -116096204 + AT_rich Low_complexity Low_complexity 1 21 0 276 327 88 54 chr12 27690281 27690578 -116095877 - L2 LINE L2 -2 3311 3005 440 286 83 26 chr12 27690701 27690893 -116095562 - MIR SINE MIR -34 228 26 2186 88 0 17 chr12 27692738 27693033 -116093422 - AluSx SINE Alu 0 312 23 240 359 58 29 chr12 27693631 27693734 -116092721 + L2 LINE L2 3150 3255 -17 779 218 23 17 chr12 27693756 27693930 -116092525 - MER20 DNA MER1_type 0 219 45 185 392 10 10 chr12 27693957 27694054 -116092401 + MIR3 SINE MIR 60 156 -52 411 254 9 35 chr12 27694079 27694193 -116092262 - L2 LINE L2 0 3272 3162 398 337 101 0 chr12 27694984 27695162 -116091293 - MIR SINE MIR -10 252 57 22 0 0 0 chr12 27695276 27695298 -116091157 + AT_rich Low_complexity Low_complexity 1 22 0 584 141 39 47 chr12 27696467 27696595 -116089860 + MER3 DNA MER1_type 82 208 -1 212 281 82 89 chr12 27697426 27697561 -116088894 + L2 LINE L2 3138 3271 -1 1976 113 18 7 chr12 27697842 27698145 -116088310 - AluSq SINE Alu 0 306 1 6831 121 3 8 chr12 27698170 27699228 -116087227 + L1MA3 LINE L1 5254 6305 0 1618 159 62 0 chr12 27700272 27700548 -116085907 + AluSx SINE Alu 1 293 -19 303 270 131 36 chr12 27700574 27700711 -116085744 - MIR SINE MIR -22 240 91 484 276 196 18 chr12 27701911 27702186 -116084269 - L2 LINE L2 -23 3290 2967 330 291 145 0 chr12 27702417 27702534 -116083921 + MIR SINE MIR 56 189 -73 369 0 0 0 chr12 27702950 27702991 -116083464 + (CA)n Simple_repeat Simple_repeat 2 42 0 534 255 12 43 chr12 27703069 27703230 -116083225 + MER20B DNA MER1_type 1 156 -627 23 0 0 0 chr12 27704089 27704112 -116082343 + AT_rich Low_complexity Low_complexity 1 23 0 777 193 82 30 chr12 27704739 27704972 -116081483 + MER20B DNA MER1_type 539 783 0 258 291 8 30 chr12 27707875 27708009 -116078446 + L1MC4 LINE L1 5825 5955 -1853 207 0 0 0 chr12 27708388 27708411 -116078044 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1336 117 44 0 chr12 27708418 27708623 -116077832 - L1PA8A LINE L1 -27 6104 5891 303 280 32 11 chr12 27708834 27708927 -116077528 + L1MC4 LINE L1 6606 6700 -1342 2029 125 20 14 chr12 27708928 27709223 -116077232 - AluSx SINE Alu -15 297 1 1419 46 0 0 chr12 27709923 27710097 -116076358 - L1PA4 LINE L1 -5 6150 5977 600 161 0 0 chr12 27712103 27712196 -116074259 - FLAM_A SINE Alu -16 126 34 246 331 25 8 chr12 27716159 27716280 -116070175 - L3 LINE CR1 -4 1573 1451 1124 147 0 0 chr12 27719220 27719410 -116067045 - L1PA13 LINE L1 -853 5293 5104 * 6238 81 14 7 chr12 27719408 27720281 -116066174 + L1PA13 LINE L1 5274 6152 -11 189 107 0 0 chr12 27720337 27720365 -116066090 + (GAAAA)n Simple_repeat Simple_repeat 4 31 0 1571 177 21 25 chr12 27721830 27722113 -116064342 + AluJo SINE Alu 1 282 -30 25 0 0 0 chr12 27722124 27722149 -116064306 + AT_rich Low_complexity Low_complexity 1 25 0 271 283 0 40 chr12 27722851 27722950 -116063505 - MIR SINE MIR -51 211 117 293 262 131 35 chr12 27723048 27723193 -116063262 - L3 LINE CR1 -206 1371 1213 2097 109 61 0 chr12 27723365 27723659 -116062796 + AluSx SINE Alu 1 312 0 269 274 38 0 chr12 27724263 27724369 -116062086 + (TA)n Simple_repeat Simple_repeat 1 110 0 180 341 165 18 chr12 27724402 27724566 -116061889 - MIR SINE MIR -57 205 18 2287 112 0 3 chr12 27725312 27725617 -116060838 - AluSq SINE Alu -9 304 1 231 210 48 0 chr12 27725627 27725689 -116060766 - MER112 DNA MER1_type -48 212 148 264 214 53 0 chr12 27725690 27725821 -116060634 + GA-rich Low_complexity Low_complexity 3 140 0 332 209 52 134 chr12 27725825 27725997 -116060458 - MER112 DNA MER1_type -99 161 4 607 319 168 53 chr12 27726607 27726882 -116059573 + L3 LINE CR1 649 891 -686 569 191 23 15 chr12 27726882 27727013 -116059442 - MER94 DNA DNA 0 134 3 607 319 168 53 chr12 27727013 27727522 -116058933 + L3 LINE CR1 891 1523 -54 2178 114 13 0 chr12 27727562 27727868 -116058587 - AluSg SINE Alu 0 310 1 215 59 0 29 chr12 27728320 27728354 -116058101 + (CA)n Simple_repeat Simple_repeat 2 34 0 561 324 116 0 chr12 27728366 27728582 -116057873 - MIR SINE MIR -10 252 12 3355 209 71 20 chr12 27729235 27730122 -116056333 + L1ME1 LINE L1 5233 6161 -5 660 218 63 63 chr12 27730502 27730754 -116055701 + L1MC5 LINE L1 6787 7038 -923 216 67 0 0 chr12 27731987 27732017 -116054438 + (TG)n Simple_repeat Simple_repeat 1 30 0 1016 210 149 86 chr12 27732433 27732697 -116053758 + L1ME3 LINE L1 5618 5923 -239 2405 143 56 23 chr12 27732697 27732848 -116053607 + L1MB7 LINE L1 5669 5814 -370 2204 108 7 0 chr12 27732848 27733144 -116053311 + AluSx SINE Alu 1 298 -14 2405 143 56 23 chr12 27733144 27733476 -116052979 + L1MB7 LINE L1 5814 6168 -16 1016 210 149 86 chr12 27733476 27733653 -116052802 + L1ME3 LINE L1 5923 6087 -75 213 235 0 0 chr12 27733654 27733705 -116052750 + (TA)n Simple_repeat Simple_repeat 2 52 0 200 333 31 10 chr12 27733785 27733881 -116052574 + MIR SINE MIR 151 248 -14 180 267 44 0 chr12 27733873 27733918 -116052537 + L2 LINE L2 2406 2452 -862 * 2318 70 7 0 chr12 27733926 27734210 -116052245 + AluSp SINE Alu 1 306 0 181 0 0 0 chr12 27734210 27734230 -116052225 + (CAAAA)n Simple_repeat Simple_repeat 2 170 0 1244 275 51 34 chr12 27734230 27734863 -116051592 + L2 LINE L2 2488 3148 -165 213 176 0 0 chr12 27734863 27734897 -116051558 + MIR SINE MIR 218 251 -11 293 180 0 0 chr12 27734897 27734913 -116051542 + L2 LINE L2 3263 3312 -1 294 29 0 0 chr12 27736507 27736542 -116049913 + (CA)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr12 27737138 27737165 -116049290 + (TG)n Simple_repeat Simple_repeat 2 28 0 209 83 28 0 chr12 27737505 27737541 -116048914 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 292 232 14 0 chr12 27737732 27737801 -116048654 - MER116 DNA Mariner -7 73 4 2259 127 0 0 chr12 27738366 27738674 -116047781 - AluSx SINE Alu -4 308 1 530 125 0 0 chr12 27738742 27738822 -116047633 - MADE1 DNA Mariner 0 80 1 289 305 48 0 chr12 27740858 27740963 -116045492 + MER94 DNA DNA 17 126 -8 350 239 145 14 chr12 27741154 27741292 -116045163 - MIR SINE MIR -31 231 76 251 245 98 37 chr12 27741432 27741595 -116044860 + Charlie7 DNA MER1_type 2434 2606 -6 353 95 14 40 chr12 27741596 27741670 -116044785 + L1PA13 LINE L1 6090 6161 -2 2261 89 7 0 chr12 27741903 27742195 -116044260 + AluSg SINE Alu 1 294 -16 228 336 17 17 chr12 27742404 27742520 -116043935 - L3b LINE CR1 -166 1417 1302 4191 73 11 0 chr12 27742557 27743105 -116043350 + MER41A LTR ERV1 1 554 0 293 105 342 0 chr12 27743191 27743267 -116043188 + MER41A-int LTR ERV1 1 102 -7654 3943 113 17 30 chr12 27743277 27743908 -116042547 + MER41A-int LTR ERV1 1 623 -5323 * 12129 113 27 25 chr12 27743894 27747105 -116039350 + MER41A-int LTR ERV1 1080 5944 -2 3858 91 27 24 chr12 27747105 27747531 -116038924 + MER41A LTR ERV1 1 431 -123 2230 123 0 0 chr12 27747531 27747831 -116038624 - AluSx SINE Alu -12 300 1 3858 91 27 24 chr12 27747831 27747956 -116038499 + MER41A LTR ERV1 431 554 0 390 208 0 0 chr12 27747958 27748030 -116038425 + Tigger5 DNA MER2_type 2252 2323 0 416 339 0 0 chr12 27749321 27749433 -116037022 + L2 LINE L2 3161 3272 0 1109 186 88 47 chr12 27750248 27750566 -116035889 + MER2 DNA MER2_type 2 332 -13 386 297 47 47 chr12 27750624 27750816 -116035639 - MIR SINE MIR -27 235 44 813 196 22 16 chr12 27750868 27751052 -116035403 + MER105 DNA DNA 18 202 -2 257 196 0 0 chr12 27751156 27751202 -116035253 - Charlie4 DNA MER1_type -37 1924 1879 2530 234 40 39 chr12 27751230 27751831 -116034624 + L1M4 LINE L1 1464 2063 -5044 1735 179 3 14 chr12 27751831 27752122 -116034333 + AluJo SINE Alu 5 292 -20 2530 234 40 39 chr12 27752122 27753115 -116033340 + L1M4 LINE L1 2063 2929 -4178 245 278 0 0 chr12 27753233 27753305 -116033150 + L1M4 LINE L1 2823 2894 -4214 1019 167 56 35 chr12 27753308 27753596 -116032859 + L1MA9 LINE L1 6015 6308 -4 207 0 0 0 chr12 27753620 27753643 -116032812 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 281 226 0 0 chr12 27753690 27753743 -116032712 - Charlie4 DNA MER1_type -1869 92 40 2082 230 5 24 chr12 27754252 27754870 -116031585 + L1M4 LINE L1 5684 6289 -817 518 42 0 14 chr12 27754873 27754944 -116031511 + L1PA7 LINE L1 6082 6151 -3 302 200 0 5 chr12 27755018 27755107 -116031348 + L1M LINE L1 6262 6348 -945 276 294 91 16 chr12 27755741 27755928 -116030527 - L1ME LINE L1 -548 5573 5373 4076 188 32 4 chr12 27755945 27757108 -116029347 - L1MB7 LINE L1 -9 6175 4980 460 273 117 43 chr12 27757776 27758058 -116028397 - L1ME4a LINE L1 -2 6119 5817 661 73 0 91 chr12 27758434 27758544 -116027911 + L1PA7 LINE L1 6030 6129 -25 * 1565 35 0 0 chr12 27758540 27758739 -116027716 + L1HS LINE L1 5953 6151 -4 52 0 0 0 chr12 27758739 27758791 -116027664 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr12 27758843 27758864 -116027591 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr12 27758890 27758917 -116027538 + (A)n Simple_repeat Simple_repeat 1 27 0 439 81 0 0 chr12 27758946 27759008 -116027447 - Charlie1 DNA MER1_type -1 2760 2699 288 0 0 0 chr12 27759314 27759346 -116027109 + (CA)n Simple_repeat Simple_repeat 2 33 0 26 0 0 0 chr12 27759986 27760012 -116026443 + AT_rich Low_complexity Low_complexity 1 26 0 484 231 4 40 chr12 27760821 27760957 -116025498 + MIR SINE MIR 14 145 -63 230 220 144 42 chr12 27760958 27761076 -116025379 + MLT1J LTR MaLR 1 130 -381 958 259 88 27 chr12 27761092 27761467 -116024988 - MLT1C LTR MaLR -2 465 68 229 347 0 31 chr12 27761624 27761722 -116024733 + MLT1J1 LTR MaLR 189 283 -163 * 243 301 58 19 chr12 27761713 27761816 -116024639 + MLT1J LTR MaLR 378 484 -27 2339 87 3 0 chr12 27761834 27762132 -116024323 - AluY SINE Alu -12 299 1 432 205 27 18 chr12 27762206 27762318 -116024137 + MIR SINE MIR 147 259 -3 475 81 106 0 chr12 27762706 27762866 -116023589 + (TA)n Simple_repeat Simple_repeat 2 178 0 180 324 0 0 chr12 27762866 27762937 -116023518 + L2 LINE L2 3146 3216 -97 2635 98 0 0 chr12 27763056 27763423 -116023032 - L1PA8 LINE L1 0 6172 5806 252 0 0 0 chr12 27764302 27764330 -116022125 + (T)n Simple_repeat Simple_repeat 1 28 0 829 179 0 0 chr12 27764678 27764801 -116021654 + AluJb SINE Alu 3 125 -187 417 347 0 0 chr12 27764831 27764955 -116021500 - L2 LINE L2 0 3272 3149 499 279 94 16 chr12 27765216 27765470 -116020985 + LTR16C LTR ERVL 209 482 -9 227 291 50 101 chr12 27765567 27765825 -116020630 + L3 LINE CR1 689 933 -644 2947 106 66 0 chr12 27765866 27766250 -116020205 + MLT2A2 LTR ERVL 1 417 -36 198 103 0 0 chr12 27766250 27766279 -116020176 + (TA)n Simple_repeat Simple_repeat 2 30 0 2947 106 66 0 chr12 27766279 27766319 -116020136 + MLT2A2 LTR ERVL 417 453 0 42444 71 7 2 chr12 27766319 27771950 -116014505 + HERVL-A2 LTR ERVL 1 5654 0 2335 58 130 30 chr12 27771950 27772311 -116014144 + MLT2A2 LTR ERVL 1 397 -56 393 22 0 0 chr12 27772312 27772358 -116014097 + (TA)n Simple_repeat Simple_repeat 1 46 0 372 22 0 0 chr12 27772357 27772402 -116014053 + (GA)n Simple_repeat Simple_repeat 2 46 0 * 234 84 0 229 chr12 27772436 27772519 -116013936 + MLT2A1 LTR ERVL 386 440 -4 352 348 23 63 chr12 27772558 27772860 -116013595 + L3 LINE CR1 1050 1339 -238 613 321 75 8 chr12 27772872 27773112 -116013343 + MIR SINE MIR 1 256 -6 1142 229 28 31 chr12 27774006 27774359 -116012096 + L1MD3 LINE L1 7479 7830 -165 514 260 74 1 chr12 27774356 27774568 -116011887 + L1MD3 LINE L1 7562 7974 0 * 957 9 0 0 chr12 27774575 27774685 -116011770 + (TCTCCC)n Simple_repeat Simple_repeat 5 114 0 4941 60 14 130 chr12 27774691 27775615 -116010840 + SVA Other Other 50 866 -520 6064 68 48 40 chr12 27775644 27776789 -116009666 + SVA Other Other 433 1386 0 217 306 31 20 chr12 27776989 27777087 -116009368 + MIR3 SINE MIR 102 200 -8 2413 77 10 0 chr12 27778242 27778541 -116007914 - AluSp SINE Alu -11 302 1 210 307 11 57 chr12 27778674 27778762 -116007693 - MIR SINE MIR -84 124 41 417 277 21 25 chr12 27778920 27779162 -116007293 - L1MEd LINE L1 -4908 1211 971 31 0 0 0 chr12 27779810 27779841 -116006614 + AT_rich Low_complexity Low_complexity 1 31 0 288 0 0 0 chr12 27780906 27780938 -116005517 + (CA)n Simple_repeat Simple_repeat 2 33 0 477 291 158 0 chr12 27781121 27781279 -116005176 + MIR SINE MIR 46 228 -34 293 286 12 12 chr12 27781311 27781395 -116005060 + L2 LINE L2 3188 3271 -1 325 287 148 50 chr12 27782660 27782862 -116003593 - L3 LINE CR1 -1 1576 1355 447 290 35 41 chr12 27782865 27783034 -116003421 + L2 LINE L2 3146 3313 0 795 328 64 5 chr12 27783114 27783504 -116002951 - L3 LINE CR1 -346 1231 819 225 239 130 109 chr12 27783639 27783777 -116002678 + MER5B DNA MER1_type 1 141 -37 298 350 17 8 chr12 27783904 27784021 -116002434 + L2 LINE L2 3154 3271 -1 208 333 232 17 chr12 27784983 27785160 -116001295 - MIR SINE MIR 0 262 48 277 284 85 10 chr12 27785479 27785798 -116000657 + L1P LINE L1 4870 5205 -941 1984 138 3 3 chr12 27786023 27786319 -116000136 + AluSx SINE Alu 3 298 -14 218 393 86 26 chr12 27786348 27786465 -115999990 + MER91A DNA MER1_type 72 195 -1 203 315 19 0 chr12 27786465 27786510 -115999945 + MER91A DNA MER1_type 144 189 -1 709 263 70 76 chr12 27786555 27787067 -115999388 + L1ME3A LINE L1 5257 5765 -405 2169 104 0 24 chr12 27787067 27787365 -115999090 + AluSx SINE Alu 1 291 -21 709 263 70 76 chr12 27787365 27787551 -115998904 + L1ME3A LINE L1 5765 5951 -219 2394 104 0 0 chr12 27788002 27788310 -115998145 - AluSq SINE Alu -4 309 2 201 175 228 0 chr12 27788564 27788621 -115997834 + MIR SINE MIR 76 145 -117 21 57 0 0 chr12 27789291 27789326 -115997129 + AT_rich Low_complexity Low_complexity 1 35 0 715 185 19 52 chr12 27790315 27790526 -115995929 - L1ME LINE L1 -5809 261 58 685 266 134 75 chr12 27790583 27790801 -115995654 + L1MEd LINE L1 662 866 -5253 732 177 0 16 chr12 27790801 27790925 -115995530 + FLAM_A SINE Alu 1 122 -11 685 266 134 75 chr12 27790925 27791131 -115995324 + L1MEd LINE L1 866 1111 -5008 405 245 82 0 chr12 27792068 27792166 -115994289 + MIR SINE MIR 37 142 -120 1685 187 6 19 chr12 27792337 27792653 -115993802 + AluJo SINE Alu 1 312 0 752 176 0 0 chr12 27792688 27792807 -115993648 + FLAM_C SINE Alu 4 122 -21 474 146 0 0 chr12 27792866 27792976 -115993479 + (TA)n Simple_repeat Simple_repeat 2 111 0 344 252 154 24 chr12 27792979 27793316 -115993139 + L1MEd LINE L1 2317 2697 -3432 185 233 23 0 chr12 27793319 27793362 -115993093 - L3 LINE CR1 -377 1200 1157 207 310 40 30 chr12 27793363 27793463 -115992992 - L3 LINE CR1 -567 1010 910 338 336 42 0 chr12 27793584 27793703 -115992752 + L2 LINE L2 3145 3268 -4 520 101 0 0 chr12 27794261 27794350 -115992105 + L1MA4 LINE L1 6211 6299 -1 1877 149 3 0 chr12 27795039 27795354 -115991101 - AluJb SINE Alu 0 316 1 21 57 0 0 chr12 27795460 27795495 -115990960 + AT_rich Low_complexity Low_complexity 1 35 0 413 237 141 0 chr12 27795517 27795652 -115990803 + MIR SINE MIR 65 218 -44 285 213 16 0 chr12 27795855 27795916 -115990539 - L2 LINE L2 0 3313 3252 983 295 43 43 chr12 27796004 27796393 -115990062 - L2 LINE L2 -335 2978 2592 1056 168 6 0 chr12 27796986 27797159 -115989296 - AluJo SINE Alu -138 174 1 1648 123 0 0 chr12 27797307 27797526 -115988929 + AluSg/x SINE Alu 80 298 -12 490 273 83 37 chr12 27798426 27798642 -115987813 + MLT1K LTR MaLR 339 564 -24 591 205 79 0 chr12 27798760 27798887 -115987568 - L2 LINE L2 0 3313 3177 852 154 0 0 chr12 27801155 27801285 -115985170 - FLAM_C SINE Alu -3 130 1 216 0 0 0 chr12 27801356 27801380 -115985075 + (A)n Simple_repeat Simple_repeat 1 24 0 1321 120 0 5 chr12 27801652 27801844 -115984611 + AluY SINE Alu 5 195 -116 821 71 0 0 chr12 27801871 27801984 -115984471 + AluY SINE Alu 147 259 -52 1439 100 0 9 chr12 27801986 27802196 -115984259 + AluY SINE Alu 97 304 -7 2215 105 7 3 chr12 27802201 27802506 -115983949 + AluSx SINE Alu 1 306 -6 2391 58 0 7 chr12 27802615 27802908 -115983547 + AluY SINE Alu 1 291 -20 23 54 0 0 chr12 27803409 27803446 -115983009 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr12 27803554 27803591 -115982864 + AT_rich Low_complexity Low_complexity 1 37 0 261 253 10 30 chr12 27804578 27804677 -115981778 + MLT1K LTR MaLR 490 586 -2 31 0 0 0 chr12 27804751 27804782 -115981673 + AT_rich Low_complexity Low_complexity 1 31 0 246 252 26 113 chr12 27804803 27804954 -115981501 + L3b LINE CR1 1268 1405 -178 1901 145 28 3 chr12 27805382 27805665 -115980790 + AluSx SINE Alu 7 296 -16 2469 66 3 0 chr12 27806132 27806435 -115980020 + AluY SINE Alu 1 304 -7 463 304 84 14 chr12 27806601 27806815 -115979640 - MIR SINE MIR -27 235 7 437 309 33 132 chr12 27806823 27807251 -115979204 - L2 LINE L2 -1 3271 2895 2073 78 0 7 chr12 27807251 27807522 -115978933 + AluY SINE Alu 35 303 -8 437 309 33 132 chr12 27807522 27807578 -115978877 - L2 LINE L2 -377 2895 2835 309 229 14 14 chr12 27807901 27807971 -115978484 + L2 LINE L2 2689 2758 -556 538 258 76 0 chr12 27808243 27808375 -115978080 - MLT1J LTR MaLR -369 142 1 2086 116 0 23 chr12 27810104 27810406 -115976049 + AluSx SINE Alu 1 295 -17 386 211 108 69 chr12 27810676 27810880 -115975575 - L2 LINE L2 -8 3305 3094 2766 175 19 21 chr12 27810893 27811475 -115974980 + L1MB4 LINE L1 5594 6174 -6 187 259 37 0 chr12 27813348 27813402 -115973053 + L2 LINE L2 2995 3050 -222 366 352 31 8 chr12 27813567 27813695 -115972760 - L2 LINE L2 -13 3259 3129 237 245 0 0 chr12 27813843 27813896 -115972559 + L2 LINE L2 3261 3313 0 1955 132 33 3 chr12 27814319 27814653 -115971802 - MER47A DNA MER2_type -3 363 20 293 252 28 63 chr12 27814964 27815107 -115971348 - L1ME4a LINE L1 -4 6117 5980 2017 150 0 10 chr12 27815269 27815575 -115970880 + AluSx SINE Alu 1 303 -9 540 208 72 16 chr12 27816438 27816563 -115969892 + FLAM_C SINE Alu 1 132 -1 239 214 0 0 chr12 27817053 27817095 -115969360 + (CA)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr12 27819535 27819560 -115966895 + AT_rich Low_complexity Low_complexity 1 25 0 1176 161 0 50 chr12 27819659 27819877 -115966578 - AluJb SINE Alu -21 291 85 2326 71 20 7 chr12 27820219 27820516 -115965939 - AluSc SINE Alu -8 301 1 274 322 141 28 chr12 27820865 27821042 -115965413 - MIR3 SINE MIR -2 206 10 344 154 51 26 chr12 27821411 27821489 -115964966 + Tigger7 DNA MER2_type 1 80 -470 2265 103 0 7 chr12 27821491 27821781 -115964674 - AluSx SINE Alu -24 288 1 2185 98 0 0 chr12 27821984 27822269 -115964186 + AluSx SINE Alu 1 285 -27 369 0 0 0 chr12 27822269 27822310 -115964145 + (CA)n Simple_repeat Simple_repeat 2 42 0 675 222 105 6 chr12 27822761 27822923 -115963532 + MER45A DNA AcHobo 1 178 0 1423 169 89 30 chr12 27823099 27823525 -115962930 + pTR5 LTR ERV1 743 1193 -1245 525 248 9 0 chr12 27823897 27824006 -115962449 - MER5A DNA MER1_type 0 189 80 1229 239 112 73 chr12 27824110 27824562 -115961893 - L1MC4 LINE L1 0 8042 7554 2333 109 3 0 chr12 27824562 27824873 -115961582 + AluSx SINE Alu 1 312 0 1229 239 112 73 chr12 27824873 27825089 -115961366 - L1MC4 LINE L1 -488 7554 7348 219 139 0 0 chr12 27825405 27825441 -115961014 + (CA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr12 27825718 27825741 -115960714 + AT_rich Low_complexity Low_complexity 1 23 0 1559 179 62 0 chr12 27826016 27826289 -115960166 + AluJb SINE Alu 1 290 -22 683 293 60 9 chr12 27826409 27826641 -115959814 + MIR SINE MIR 4 247 -15 877 218 6 6 chr12 27826650 27826824 -115959631 - FRAM SINE Alu -3 173 1 1953 141 7 0 chr12 27827044 27827343 -115959112 - AluSx SINE Alu 0 312 12 1560 196 10 10 chr12 27828156 27828447 -115958008 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr12 27828447 27828468 -115957987 + AT_rich Low_complexity Low_complexity 1 21 0 311 173 53 0 chr12 27828691 27828766 -115957689 + L1MB3 LINE L1 6089 6167 -16 651 132 9 0 chr12 27829227 27829333 -115957122 - AluSg/x SINE Alu 0 312 206 1397 80 16 21 chr12 27829438 27829625 -115956830 - AluSq SINE Alu -127 186 1 27 29 0 0 chr12 27830418 27830452 -115956003 + AT_rich Low_complexity Low_complexity 1 34 0 785 331 156 24 chr12 27830499 27830553 -115955902 - L3 LINE CR1 -578 999 954 2323 138 121 30 chr12 27830553 27831016 -115955439 + MLT1D LTR MaLR 1 505 0 785 331 156 24 chr12 27831016 27831393 -115955062 - L3 LINE CR1 -623 954 628 2230 120 0 3 chr12 27831393 27831694 -115954761 - AluSx SINE Alu -7 305 6 785 331 156 24 chr12 27831694 27831984 -115954471 - L3 LINE CR1 -949 628 181 1617 197 11 0 chr12 27832055 27832339 -115954116 + AluJb SINE Alu 1 287 -25 27 29 0 0 chr12 27832349 27832383 -115954072 + AT_rich Low_complexity Low_complexity 1 34 0 535 267 47 7 chr12 27832718 27832868 -115953587 - MIR SINE MIR -64 198 43 255 259 9 28 chr12 27832952 27833060 -115953395 - L1MC5 LINE L1 -48 7913 7808 2408 225 73 42 chr12 27833084 27833348 -115953107 - L1ME1 LINE L1 -23 6143 5888 2299 111 3 0 chr12 27833348 27833655 -115952800 - AluSx SINE Alu -4 308 1 2408 225 73 42 chr12 27833655 27834206 -115952249 - L1ME1 LINE L1 -278 5888 5296 2025 112 0 0 chr12 27834206 27834482 -115951973 - AluSx SINE Alu -36 276 1 2408 225 73 42 chr12 27834482 27834679 -115951776 - L1ME1 LINE L1 -870 5296 5106 253 318 15 50 chr12 27834822 27834837 -115951618 - L1MDa LINE L1 -6329 211 197 1981 136 0 48 chr12 27834837 27835147 -115951308 + AluSx SINE Alu 3 297 -15 253 318 15 50 chr12 27835147 27835329 -115951126 - L1MDa LINE L1 -6343 197 21 2342 105 0 6 chr12 27835988 27836301 -115950154 - AluSx SINE Alu -1 311 1 833 231 53 25 chr12 27836308 27836551 -115949904 - MER112 DNA MER1_type -8 252 3 530 250 38 87 chr12 27836984 27837108 -115949347 + MIR SINE MIR 12 141 -121 409 91 13 13 chr12 27837108 27837185 -115949270 + (TA)n Simple_repeat Simple_repeat 2 78 0 2089 129 7 20 chr12 27837185 27837487 -115948968 - AluJo SINE Alu -14 298 1 530 250 38 87 chr12 27837487 27837625 -115948830 + MIR SINE MIR 139 262 0 34 65 0 0 chr12 27837861 27837923 -115948532 + AT_rich Low_complexity Low_complexity 1 62 0 1073 168 0 0 chr12 27838452 27838619 -115947836 - FRAM SINE Alu -10 166 1 1646 184 0 32 chr12 27838676 27838985 -115947470 + AluJo SINE Alu 1 299 -13 27 92 0 0 chr12 27839010 27839086 -115947369 + AT_rich Low_complexity Low_complexity 1 76 0 5510 125 24 50 chr12 27839623 27839693 -115946762 - MER49 LTR ERV1 0 923 853 7783 41 3 1 chr12 27839693 27840579 -115945876 + L1PA7 LINE L1 5254 6141 -13 207 0 0 0 chr12 27840583 27840606 -115945849 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 5510 125 24 50 chr12 27840606 27841384 -115945071 - MER49 LTR ERV1 -73 850 93 1654 179 11 0 chr12 27841384 27841689 -115944766 - AluJo SINE Alu 0 308 1 5510 125 24 50 chr12 27841689 27841780 -115944675 - MER49 LTR ERV1 -830 93 1 400 273 83 0 chr12 27841984 27842105 -115944350 + MIR SINE MIR 2 132 -130 766 264 87 28 chr12 27842134 27842559 -115943896 + LTR33 LTR ERVL 54 503 -18 240 250 29 44 chr12 27842576 27842644 -115943811 + MIR SINE MIR 167 233 -29 665 300 25 17 chr12 27843280 27843410 -115943045 + MIR SINE MIR 12 146 -116 1935 123 49 0 chr12 27843410 27843695 -115942760 + AluJo SINE Alu 1 299 -13 665 300 25 17 chr12 27843695 27843801 -115942654 + MIR SINE MIR 146 250 -12 282 116 0 0 chr12 27843948 27843991 -115942464 + (TA)n Simple_repeat Simple_repeat 2 44 0 799 214 48 19 chr12 27844084 27844290 -115942165 + MIR SINE MIR 1 212 -50 849 217 17 0 chr12 27844421 27844596 -115941859 + L1ME2 LINE L1 5986 6163 -1 325 284 69 9 chr12 27845106 27845222 -115941233 - MIR SINE MIR -73 189 67 330 295 43 0 chr12 27847124 27847263 -115939192 - MER103 DNA DNA -5 161 17 1962 133 27 0 chr12 27847672 27847966 -115938489 - AluSx SINE Alu -10 302 1 894 208 6 11 chr12 27848020 27848203 -115938252 + Tigger1 DNA MER2_type 1 182 -2236 665 173 27 0 chr12 27848215 27848325 -115938130 - FLAM_C SINE Alu -21 122 10 9394 118 3 30 chr12 27848333 27849107 -115937348 + Tigger1 DNA MER2_type 177 894 -1524 2308 100 0 0 chr12 27849107 27849407 -115937048 + AluSx SINE Alu 1 300 -12 9394 118 3 30 chr12 27849407 27850080 -115936375 + Tigger1 DNA MER2_type 894 1584 -834 848 150 8 0 chr12 27850081 27850208 -115936247 - AluSg/x SINE Alu -11 299 172 399 301 59 59 chr12 27851783 27851969 -115934486 + L2 LINE L2 3068 3253 -19 222 105 0 0 chr12 27851970 27852008 -115934447 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2029 116 7 7 chr12 27852008 27852293 -115934162 - AluSp SINE Alu -28 285 1 3114 79 5 12 chr12 27852551 27852958 -115933497 - L1PA8 LINE L1 -1 6171 5768 264 250 125 25 chr12 27853737 27853857 -115932598 + L1MEd LINE L1 1 132 -5987 1082 146 0 6 chr12 27854066 27854259 -115932196 + AluSg/x SINE Alu 119 310 0 385 169 0 0 chr12 27854259 27854324 -115932131 + MLT1A1 LTR MaLR 301 365 0 2448 68 0 3 chr12 27854647 27854943 -115931512 + AluY SINE Alu 1 295 -16 533 233 43 0 chr12 27855215 27855331 -115931124 + L2 LINE L2 3192 3312 -1 396 0 0 0 chr12 27855695 27855739 -115930716 + (ATG)n Simple_repeat Simple_repeat 2 45 0 552 148 9 35 chr12 27855808 27855923 -115930532 - LTR41 LTR ERVL -2 771 660 1321 148 39 0 chr12 27855926 27856129 -115930326 + AluJb SINE Alu 1 211 -101 709 180 23 8 chr12 27856138 27856447 -115930008 + AluJb SINE Alu 166 476 0 2571 52 0 0 chr12 27856501 27856806 -115929649 + AluY SINE Alu 1 305 -6 337 292 183 0 chr12 27857208 27857345 -115929110 - LTR41 LTR ERVL -611 162 1 2415 97 0 0 chr12 27857847 27858147 -115928308 + AluSx SINE Alu 1 300 -12 2372 62 0 20 chr12 27859982 27860287 -115926168 + AluY SINE Alu 1 299 -12 1033 161 6 0 chr12 27860537 27860699 -115925756 - FRAM SINE Alu -13 163 1 340 82 311 0 chr12 27860716 27860777 -115925678 + MADE1 DNA Mariner 1 80 0 1792 172 33 7 chr12 27860838 27861141 -115925314 - AluJb SINE Alu -1 311 1 319 163 0 17 chr12 27861379 27861532 -115924923 + AluJb SINE Alu 87 291 -11 300 282 0 0 chr12 27861585 27861656 -115924799 - L2 LINE L2 -1 3312 3242 23 0 0 0 chr12 27861744 27861767 -115924688 + AT_rich Low_complexity Low_complexity 1 23 0 1209 163 24 10 chr12 27861855 27862064 -115924391 - AluJb SINE Alu -15 297 86 1158 122 14 75 chr12 27862648 27862862 -115923593 + AluJo SINE Alu 86 286 -26 249 33 0 0 chr12 27862862 27862892 -115923563 + (TA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr12 27864362 27864384 -115922071 + AT_rich Low_complexity Low_complexity 1 22 0 2081 134 0 0 chr12 27864913 27865216 -115921239 - AluSx SINE Alu 0 303 1 21 71 0 0 chr12 27865230 27865272 -115921183 + AT_rich Low_complexity Low_complexity 1 42 0 617 195 71 47 chr12 27865906 27866075 -115920380 - MER104 DNA MER2_type -4 176 4 839 174 12 25 chr12 27867196 27867357 -115919098 + MER5A DNA MER1_type 5 163 -26 2662 209 276 91 chr12 27867434 27867832 -115918623 + L2 LINE L2 525 848 -2466 1567 203 3 10 chr12 27867832 27868127 -115918328 - AluJo SINE Alu -19 293 1 2662 209 276 91 chr12 27868127 27869253 -115917202 + L2 LINE L2 848 2332 -982 823 318 55 40 chr12 27869284 27869737 -115916718 - L2 LINE L2 -616 2698 2239 539 260 0 8 chr12 27869737 27869864 -115916591 - L2 LINE L2 -1336 1978 1853 234 266 147 63 chr12 27869865 27870117 -115916338 - L2 LINE L2 -1747 1567 1295 421 315 119 8 chr12 27870776 27871011 -115915444 - L3 LINE CR1 -126 1451 1191 387 95 16 0 chr12 27871186 27871249 -115915206 + Alu SINE Alu 239 302 0 2479 45 3 36 chr12 27871905 27872214 -115914241 + AluY SINE Alu 1 299 -12 189 74 0 0 chr12 27872424 27872451 -115914004 + (GA)n Simple_repeat Simple_repeat 2 28 0 186 375 14 0 chr12 27874435 27874507 -115911948 + L2 LINE L2 1852 1924 -1390 1563 238 45 11 chr12 27875770 27876149 -115910306 + MSTD LTR MaLR 1 392 -4 2541 75 0 0 chr12 27876291 27876599 -115909856 + AluY SINE Alu 1 308 -3 23794 94 9 3 chr12 27876701 27880501 -115905954 + L1P3 LINE L1 1956 5774 -380 397 278 28 35 chr12 27880847 27880991 -115905464 + MIR3 SINE MIR 14 156 -52 862 243 35 24 chr12 27881207 27881462 -115904993 - MIR SINE MIR -1 261 4 437 123 48 27 chr12 27882061 27882323 -115904132 + (TA)n Simple_repeat Simple_repeat 1 267 0 307 281 98 117 chr12 27883572 27884052 -115902403 - L1M2 LINE L1 -5925 924 454 2271 99 0 0 chr12 27884858 27885152 -115901303 + AluSx SINE Alu 1 294 -18 2373 83 0 7 chr12 27885626 27885927 -115900528 + AluSq SINE Alu 1 299 -14 329 209 55 55 chr12 27886886 27886996 -115899459 - MER115 DNA AcHobo 0 4031 584 226 196 39 0 chr12 27887165 27887216 -115899239 - MER115 DNA AcHobo -633 60 8 1995 132 0 3 chr12 27887779 27888083 -115898372 - AluSq SINE Alu -10 303 1 286 294 147 0 chr12 27890220 27890329 -115896126 - MIR SINE MIR -106 156 32 314 321 79 14 chr12 27890380 27890520 -115895935 + MIR SINE MIR 52 200 -62 385 250 17 57 chr12 27890566 27890742 -115895713 + CT-rich Low_complexity Low_complexity 4 172 0 2123 101 17 14 chr12 27890748 27891044 -115895411 - AluSx SINE Alu -7 305 9 2257 103 0 7 chr12 27891369 27891671 -115894784 + AluSx SINE Alu 1 300 -12 96 53 0 0 chr12 27891799 27891951 -115894504 + AT_rich Low_complexity Low_complexity 1 152 0 254 277 113 92 chr12 27891970 27892111 -115894344 + L2 LINE L2 3129 3272 0 2358 93 0 3 chr12 27893193 27893504 -115892951 + AluSg SINE Alu 1 310 0 483 62 37 25 chr12 27895045 27895126 -115891329 + L1MA5 LINE L1 6217 6298 -2 2046 135 0 0 chr12 27895133 27895429 -115891026 + AluSg SINE Alu 1 296 -14 584 140 59 1 chr12 27895436 27895558 -115890897 + L1MC3 LINE L1 7677 7785 0 645 332 142 38 chr12 27896065 27896181 -115890274 - L2 LINE L2 -181 3091 2988 1618 184 23 23 chr12 27896181 27896490 -115889965 + AluJo SINE Alu 4 312 0 645 332 142 38 chr12 27896490 27897139 -115889316 - L2 LINE L2 -284 2988 2265 1148 61 7 14 chr12 27897139 27897286 -115889169 + AluY SINE Alu 1 146 -165 1334 78 5 11 chr12 27897392 27897583 -115888872 + L1PA7 LINE L1 5964 6153 -1 2480 73 0 0 chr12 27897895 27898197 -115888258 + AluY SINE Alu 1 302 -9 411 206 48 87 chr12 27899245 27899371 -115887084 - MIR3 SINE MIR -3 205 85 1553 237 133 32 chr12 27900698 27901201 -115885254 - MER68 LTR ERV1 -8 554 1 2372 228 60 1 chr12 27901201 27901971 -115884484 + L1ME1 LINE L1 4651 5464 -743 273 279 317 0 chr12 27902159 27902263 -115884192 + L2 LINE L2 3136 3272 0 2231 102 3 0 chr12 27904058 27904365 -115882090 + AluSq SINE Alu 1 308 0 316 291 0 17 chr12 27904377 27904494 -115881961 + L1ME4a LINE L1 5986 6100 -21 23 33 0 0 chr12 27904503 27904533 -115881922 + AT_rich Low_complexity Low_complexity 1 30 0 182 333 0 0 chr12 27905024 27905072 -115881383 + L2 LINE L2 3219 3266 -6 21 71 0 0 chr12 27906170 27906212 -115880243 + AT_rich Low_complexity Low_complexity 1 42 0 245 204 75 32 chr12 27906572 27906665 -115879790 + L1ME1 LINE L1 5505 5601 -743 502 194 56 160 chr12 27906683 27906959 -115879496 + L1ME1 LINE L1 5880 6125 -41 328 223 115 0 chr12 27906994 27907124 -115879331 - L1ME4a LINE L1 -4 6117 5973 300 266 130 39 chr12 27907569 27907696 -115878759 - L1ME4a LINE L1 -171 5950 5795 2171 118 3 0 chr12 27907696 27907992 -115878463 + AluSq SINE Alu 1 297 -16 300 266 130 39 chr12 27907992 27908071 -115878384 - L1ME4a LINE L1 -326 5795 5725 602 98 33 0 chr12 27908090 27908182 -115878273 - AluSg/x SINE Alu -8 304 210 1845 77 3 23 chr12 27909051 27909347 -115877108 + THE1C LTR MaLR 1 375 0 2188 115 3 0 chr12 27909457 27909752 -115876703 - AluSx SINE Alu -16 296 1 22 70 0 0 chr12 27910169 27910212 -115876243 + AT_rich Low_complexity Low_complexity 1 43 0 444 207 96 64 chr12 27910573 27910761 -115875694 + L1MC5 LINE L1 7732 7925 -36 2048 140 0 7 chr12 27910773 27911073 -115875382 + AluSx SINE Alu 2 299 -13 1715 179 0 10 chr12 27911351 27911647 -115874808 - AluSx SINE Alu -16 296 4 2198 162 119 38 chr12 27912046 27912552 -115873903 + MER44D DNA MER2_type 159 705 0 24 0 0 0 chr12 27912738 27912762 -115873693 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chr12 27912994 27913048 -115873407 + AT_rich Low_complexity Low_complexity 1 54 0 217 276 0 17 chr12 27913547 27913605 -115872850 - L2 LINE L2 -1 3312 3256 1103 82 0 0 chr12 27914239 27914373 -115872082 - AluSp/q SINE Alu -17 296 163 262 306 174 0 chr12 27914374 27914493 -115871962 - MIR SINE MIR -114 148 9 361 224 0 0 chr12 27914493 27914560 -115871895 + MER5A DNA MER1_type 1 67 -122 860 148 7 7 chr12 27914563 27914698 -115871757 - AluJo SINE Alu -177 135 1 22 0 0 0 chr12 27914710 27914732 -115871723 + AT_rich Low_complexity Low_complexity 1 22 0 237 230 13 118 chr12 27914757 27914909 -115871546 + LTR2 LTR ERV1 4 139 -310 848 139 0 36 chr12 27916578 27916715 -115869740 - FLAM_C SINE Alu -1 132 1 360 287 74 9 chr12 27917079 27917187 -115869268 - L2 LINE L2 0 3313 3199 21 36 0 0 chr12 27917740 27917768 -115868687 + AT_rich Low_complexity Low_complexity 1 28 0 518 184 104 75 chr12 27918703 27918904 -115867551 - L1MC4 LINE L1 0 8042 7836 398 241 0 13 chr12 27919040 27919119 -115867336 + MER21B LTR ERV1 13 90 -773 2090 245 113 37 chr12 27919141 27919864 -115866591 + MER21B LTR ERV1 19 796 -67 40 0 0 0 chr12 27920010 27920050 -115866405 + AT_rich Low_complexity Low_complexity 1 40 0 1961 150 0 0 chr12 27920050 27920336 -115866119 - AluJb SINE Alu -22 290 5 1983 213 50 6 chr12 27921376 27921856 -115864599 + L1M4 LINE L1 3668 4168 -1978 1144 196 87 57 chr12 27921864 27922129 -115864326 + AluJo SINE Alu 2 274 -38 413 187 30 15 chr12 27922129 27922263 -115864192 + GA-rich Low_complexity Low_complexity 3 138 0 2462 198 62 2 chr12 27922264 27922875 -115863580 + L1M4 LINE L1 4152 4799 -1347 201 179 36 18 chr12 27923546 27923586 -115862869 + A-rich Low_complexity Low_complexity 4 47 -13 2220 122 0 3 chr12 27923586 27923897 -115862558 + AluSx SINE Alu 1 310 -2 201 179 36 18 chr12 27923897 27923912 -115862543 + A-rich Low_complexity Low_complexity 47 60 0 2390 90 0 0 chr12 27924230 27924531 -115861924 + AluSq SINE Alu 1 301 -12 365 321 46 68 chr12 27924546 27924985 -115861470 + HAL1 LINE L1 91 519 -1988 709 163 0 8 chr12 27925003 27925126 -115861329 + MER3 DNA MER1_type 6 127 -82 657 273 205 30 chr12 27925137 27926466 -115859989 + HAL1 LINE L1 592 2210 -297 1367 122 33 5 chr12 27926492 27926705 -115859750 + AluSg/x SINE Alu 76 294 -18 303 198 173 25 chr12 27926723 27926885 -115859570 + HAL1 LINE L1 2298 2483 -24 281 290 154 88 chr12 27927154 27927652 -115858803 - L2 LINE L2 0 3313 2762 468 272 94 31 chr12 27927902 27928107 -115858348 - MIR SINE MIR -30 232 19 424 252 54 9 chr12 27928497 27928608 -115857847 + MIR SINE MIR 37 152 -110 461 282 0 0 chr12 27928713 27928830 -115857625 + MIR SINE MIR 146 262 0 240 246 0 18 chr12 27930408 27930465 -115855990 + (CG)n Simple_repeat Simple_repeat 2 57 0 180 368 80 8 chr12 27931530 27931655 -115854800 + L2 LINE L2 2359 2492 -822 208 311 183 63 chr12 27931900 27932234 -115854221 + L2 LINE L2 2872 3245 -27 192 40 0 0 chr12 27934453 27934478 -115851977 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2129 86 0 0 chr12 27934478 27934745 -115851710 - AluSg SINE Alu -32 278 12 7893 230 74 34 chr12 27935079 27935967 -115850488 - L1MC/D LINE L1 -743 5403 4553 2220 112 0 10 chr12 27935967 27936271 -115850184 + AluSx SINE Alu 1 301 -11 7893 230 74 34 chr12 27936271 27936419 -115850036 - L1MC/D LINE L1 -1593 4553 4412 201 44 22 44 chr12 27936419 27936464 -115849991 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 7893 230 74 34 chr12 27936464 27938003 -115848452 - L1MC/D LINE L1 -1734 4412 2937 2344 90 0 0 chr12 27938003 27938304 -115848151 + AluSq SINE Alu 1 301 -12 7893 230 74 34 chr12 27938304 27938739 -115847716 - L1MC/D LINE L1 -3209 2937 2348 1618 179 10 10 chr12 27938739 27939035 -115847420 - AluJb SINE Alu -16 296 1 7893 230 74 34 chr12 27939035 27939069 -115847386 - L1MC/D LINE L1 -3798 2348 2317 2031 213 86 41 chr12 27939077 27939845 -115846610 - L1MB8 LINE L1 -5 6567 5835 1445 169 123 0 chr12 27939845 27940105 -115846350 - AluJb SINE Alu -10 292 1 2031 213 86 41 chr12 27940105 27941079 -115845376 - L1MB8 LINE L1 -737 5835 1637 530 200 70 17 chr12 27941318 27941433 -115845022 + FLAM_A SINE Alu 1 121 -12 24 0 0 0 chr12 27941442 27941466 -115844989 + AT_rich Low_complexity Low_complexity 1 24 0 2097 125 14 0 chr12 27941560 27941856 -115844599 - AluSq SINE Alu -13 300 1 2392 88 0 3 chr12 27942008 27942304 -115844151 - AluSq SINE Alu -18 295 1 2539 60 0 16 chr12 27942642 27942958 -115843497 - AluY SINE Alu 0 311 1 281 287 69 0 chr12 27943300 27943401 -115843054 - MER89-int LTR ERV1 -3293 3508 3401 1190 113 17 6 chr12 27943581 27943758 -115842697 - AluSg/x SINE Alu -11 301 123 2017 120 0 0 chr12 27943785 27944051 -115842404 - AluSx SINE Alu -46 266 1 180 0 0 0 chr12 27944519 27944539 -115841916 + (T)n Simple_repeat Simple_repeat 1 20 0 2368 65 0 19 chr12 27945412 27945722 -115840733 + AluY SINE Alu 1 304 -7 4191 148 50 22 chr12 27947755 27948350 -115838105 - L1MB7 LINE L1 -14 6170 5593 1288 111 93 28 chr12 27948350 27948566 -115837889 - MER30 DNA MER1_type 0 230 1 4191 148 50 22 chr12 27948566 27948874 -115837581 - L1MB7 LINE L1 -591 5593 5233 280 85 0 34 chr12 27948874 27948933 -115837522 + (TA)n Simple_repeat Simple_repeat 1 57 0 4191 148 50 22 chr12 27948933 27948953 -115837502 - L1MB7 LINE L1 -951 5233 5215 443 271 128 31 chr12 27949194 27949452 -115837003 + L2 LINE L2 2464 2746 -568 1829 182 0 7 chr12 27950510 27950806 -115835649 + AluJo SINE Alu 1 294 -18 27 0 0 0 chr12 27951598 27951625 -115834830 + AT_rich Low_complexity Low_complexity 1 27 0 2034 115 35 3 chr12 27953896 27954182 -115832273 + AluSq SINE Alu 1 295 -18 738 158 0 55 chr12 27954435 27954600 -115831855 + MER3 DNA MER1_type 6 161 -48 343 346 47 0 chr12 27954982 27955089 -115831366 + L2 LINE L2 3136 3247 -25 21 0 0 0 chr12 27957512 27957533 -115828922 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 27958257 27958286 -115828169 + AT_rich Low_complexity Low_complexity 1 29 0 891 220 53 36 chr12 27959249 27959672 -115826783 + MLT1C LTR MaLR 1 467 0 2154 97 4 4 chr12 27959818 27960096 -115826359 + AluSq SINE Alu 22 299 -14 1834 195 138 8 chr12 27960240 27960733 -115825722 + L2 LINE L2 2043 2599 -715 242 174 0 0 chr12 27960751 27960797 -115825658 + L1ME LINE L1 5727 5772 -349 1603 236 65 11 chr12 27961345 27961803 -115824652 - LTR34 LTR ERV1 -4 695 213 483 348 135 12 chr12 27961877 27962136 -115824319 + L2 LINE L2 2979 3269 -3 2009 118 21 11 chr12 27962175 27962462 -115823993 - AluSx SINE Alu -17 295 6 1649 150 64 47 chr12 27962679 27963040 -115823415 - MLT1B LTR MaLR -19 371 5 280 339 109 12 chr12 27963435 27963600 -115822855 + MIR3 SINE MIR 14 194 -14 1760 106 24 109 chr12 27964853 27965182 -115821273 - AluYb8 SINE Alu -17 301 1 331 116 72 14 chr12 27965433 27965502 -115820953 + L1MB2 LINE L1 6097 6169 -2 1665 168 30 14 chr12 27965608 27965905 -115820550 - AluJb SINE Alu -10 302 1 311 250 201 35 chr12 27969038 27969182 -115817273 + MIR3 SINE MIR 40 207 -1 330 240 173 34 chr12 27969636 27969844 -115816611 + Charlie7 DNA MER1_type 319 555 -2057 2193 127 0 0 chr12 27969904 27970196 -115816259 + AluSx SINE Alu 1 292 -20 330 26 0 0 chr12 27970199 27970238 -115816217 + (TG)n Simple_repeat Simple_repeat 2 40 0 1752 163 24 0 chr12 27970253 27970541 -115815914 + AluJo SINE Alu 1 295 -17 237 189 78 44 chr12 27970602 27970692 -115815763 + Charlie7 DNA MER1_type 2520 2612 0 259 254 212 85 chr12 27970730 27970895 -115815560 - MIR SINE MIR -55 207 22 1908 139 10 23 chr12 27971011 27971313 -115815142 - AluJo SINE Alu -14 298 1 223 314 14 0 chr12 27971320 27971390 -115815065 - MER5A DNA MER1_type -80 109 39 1066 159 0 28 chr12 27973783 27973959 -115812496 + FAM SINE Alu 5 175 0 1936 157 0 7 chr12 27974468 27974767 -115811688 - AluJb SINE Alu -15 297 1 824 158 0 8 chr12 27974781 27974908 -115811547 - FLAM_C SINE Alu -17 126 1 283 250 0 73 chr12 27975439 27975563 -115810892 + L1MC5 LINE L1 7175 7289 -672 800 188 73 122 chr12 27975683 27976092 -115810363 + L1MC5 LINE L1 7484 7872 -89 22 0 0 0 chr12 27976162 27976184 -115810271 + AT_rich Low_complexity Low_complexity 1 22 0 2189 105 6 13 chr12 27976579 27976893 -115809562 + AluSx SINE Alu 1 312 0 1131 74 0 0 chr12 27977646 27977781 -115808674 + AluSq/x SINE Alu 1 135 -177 1697 145 26 4 chr12 27977781 27978050 -115808405 + AluSx SINE Alu 1 275 -37 947 219 31 22 chr12 27978203 27978427 -115808028 - AluJo SINE Alu 0 312 87 230 263 32 68 chr12 27978996 27979186 -115807269 - AluSp SINE Alu -8 295 113 22 0 0 0 chr12 27979584 27979606 -115806849 + AT_rich Low_complexity Low_complexity 1 22 0 301 226 32 147 chr12 27979676 27979866 -115806589 - L1MC5 LINE L1 -89 7872 7705 26 30 0 0 chr12 27979983 27980016 -115806439 + GC_rich Low_complexity Low_complexity 1 33 0 250 187 26 65 chr12 27980123 27980278 -115806177 + (CCGCG)n Simple_repeat Simple_repeat 2 150 0 2659 141 4 57 chr12 27980466 27980496 -115805959 + MER31A LTR ERV1 1 31 -454 2502 40 0 52 chr12 27980496 27980824 -115805631 - AluY SINE Alu 0 311 1 2659 141 4 57 chr12 27980824 27981305 -115805150 + MER31A LTR ERV1 31 485 0 2007 226 74 90 chr12 27981370 27981759 -115804696 + L2 LINE L2 1759 2187 -1127 280 140 0 0 chr12 27981759 27981816 -115804639 + Tigger2 DNA MER2_type 2281 2337 -381 2007 226 74 90 chr12 27981816 27982167 -115804288 + L2 LINE L2 2187 2542 -772 2782 196 75 57 chr12 27982170 27982878 -115803577 + L1MC4 LINE L1 6966 7660 -382 1884 156 0 3 chr12 27982878 27983161 -115803294 - AluJb SINE Alu -30 282 1 2782 196 75 57 chr12 27983161 27983370 -115803085 + L1MC4 LINE L1 7660 7903 -139 333 0 0 0 chr12 27983370 27983407 -115803048 + (TG)n Simple_repeat Simple_repeat 2 38 0 2782 196 75 57 chr12 27983407 27983424 -115803031 + L1MC4 LINE L1 7903 7918 -124 2261 132 46 59 chr12 27983424 27983854 -115802601 + Tigger2 DNA MER2_type 1 435 -2283 2190 116 0 3 chr12 27983854 27984148 -115802307 + AluSq SINE Alu 5 297 -16 2261 132 46 59 chr12 27984148 27984221 -115802234 + Tigger2 DNA MER2_type 435 2718 0 443 207 60 0 chr12 27984240 27984356 -115802099 + L1MC4 LINE L1 7918 8040 -2 180 0 0 0 chr12 27984365 27984385 -115802070 + (CA)n Simple_repeat Simple_repeat 2 21 0 994 272 96 13 chr12 27984387 27985077 -115801378 + L2 LINE L2 2556 3311 -2 343 336 47 0 chr12 27985608 27985715 -115800740 + L2 LINE L2 3179 3290 -23 2857 10 0 0 chr12 27985834 27986147 -115800308 - AluYb8 SINE Alu -5 313 1 321 247 99 39 chr12 27986416 27986598 -115799857 - L1MC4 LINE L1 -27 8015 7823 334 289 173 13 chr12 27986601 27986757 -115799698 - MER5A DNA MER1_type 0 189 9 1077 108 76 58 chr12 27986794 27986956 -115799499 - Tigger5 DNA MER2_type -12 2311 2142 2289 63 0 30 chr12 27986956 27987279 -115799176 - AluY SINE Alu 0 311 1 1077 108 76 58 chr12 27987279 27987339 -115799116 - Tigger5 DNA MER2_type -181 2142 2085 494 238 66 3 chr12 27987329 27987504 -115798951 - Tigger5 DNA MER2_type -2085 238 1 * 1853 147 20 7 chr12 27987601 27987901 -115798554 - AluJb SINE Alu -8 304 1 710 227 92 109 chr12 27988076 27988757 -115797698 - L1MC5 LINE L1 -548 7494 6888 534 292 88 12 chr12 27989045 27989086 -115797369 - MER5A DNA MER1_type 0 189 153 1959 113 0 0 chr12 27989086 27989342 -115797113 - AluSq SINE Alu -57 256 1 534 292 88 12 chr12 27989342 27989471 -115796984 - MER5A DNA MER1_type -36 153 6 1849 181 45 14 chr12 27990268 27990622 -115795833 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr12 27990705 27990728 -115795727 + AT_rich Low_complexity Low_complexity 1 23 0 912 148 0 22 chr12 27990728 27990863 -115795592 + FLAM_C SINE Alu 2 133 0 208 292 69 62 chr12 27990932 27991062 -115795393 + MIR SINE MIR 132 262 0 1065 227 20 0 chr12 27991771 27991974 -115794481 - MER58A DNA MER1_type -16 208 2 353 319 183 48 chr12 27992296 27992519 -115793936 + L2 LINE L2 1716 1908 -1406 2056 133 0 29 chr12 27992519 27992828 -115793627 - AluSg SINE Alu -10 300 1 353 319 183 48 chr12 27992828 27993568 -115792887 + L2 LINE L2 1908 2809 -505 2434 61 0 3 chr12 27993810 27994103 -115792352 + AluSg SINE Alu 1 292 -18 1465 215 28 28 chr12 27994580 27994934 -115791521 - MLT1A1 LTR MaLR 0 365 12 477 185 69 69 chr12 27995108 27995158 -115791297 - L1MA10 LINE L1 -3 6317 6268 2511 68 0 0 chr12 27995158 27995454 -115791001 - AluY SINE Alu -15 296 1 477 185 69 69 chr12 27995454 27995568 -115790887 - L1MA10 LINE L1 -51 6269 5997 195 161 0 0 chr12 27996270 27996301 -115790154 + L2 LINE L2 3266 3296 -17 226 189 38 0 chr12 27996725 27996778 -115789677 + (CA)n Simple_repeat Simple_repeat 2 56 0 1073 154 123 26 chr12 27996880 27997075 -115789380 + AluJo SINE Alu 5 218 -94 225 260 0 0 chr12 27997096 27997146 -115789309 + Alu SINE Alu 84 133 0 435 343 7 7 chr12 27998167 27998310 -115788145 - MIR SINE MIR -73 189 47 360 216 0 14 chr12 27998544 27998618 -115787837 + MIR SINE MIR 74 146 -116 2227 112 7 0 chr12 28000500 28000795 -115785660 - AluSx SINE Alu -15 297 1 2306 104 3 3 chr12 28000824 28001132 -115785323 - AluSc SINE Alu -1 308 1 450 187 21 0 chr12 28001492 28001596 -115784859 - L1ME LINE L1 -303 5818 5708 426 280 0 68 chr12 28002182 28002314 -115784141 + MER5B DNA MER1_type 1 123 -55 1850 255 87 55 chr12 28002353 28003472 -115782983 - L1ME3A LINE L1 -76 6094 4896 1246 162 73 8 chr12 28003472 28003706 -115782749 + L1PB4 LINE L1 5905 6153 -3 1850 255 87 55 chr12 28003706 28004263 -115782192 - L1ME3A LINE L1 -1274 4896 4359 776 172 8 8 chr12 28004270 28004392 -115782063 - FLAM_C SINE Alu -20 123 2 208 239 2 65 chr12 28004432 28004499 -115781956 + MER5B DNA MER1_type 123 177 -1 273 207 35 17 chr12 28004708 28004766 -115781689 + L2 LINE L2 3208 3266 -6 290 271 14 0 chr12 28004772 28004842 -115781613 + MIR SINE MIR 79 149 -113 210 253 48 60 chr12 28006700 28006783 -115779672 + MIR SINE MIR 111 192 -70 2377 71 7 0 chr12 28007413 28007710 -115778745 + AluSg SINE Alu 1 299 -11 321 254 6 85 chr12 28008091 28008268 -115778187 + MER31-int LTR ERV1 1050 1212 -3724 22 0 0 0 chr12 28009018 28009040 -115777415 + GC_rich Low_complexity Low_complexity 1 22 0 2378 137 146 2 chr12 28009839 28010263 -115776192 - MER31A LTR ERV1 0 485 1 23 0 0 0 chr12 28010705 28010728 -115775727 + AT_rich Low_complexity Low_complexity 1 23 0 520 285 120 51 chr12 28010739 28011101 -115775354 + L1ME4a LINE L1 5290 5696 -425 1121 167 0 0 chr12 28011101 28011269 -115775186 + FAM SINE Alu 1 168 -7 520 285 120 51 chr12 28011269 28011397 -115775058 + L1ME4a LINE L1 5696 5814 -307 2209 111 0 13 chr12 28011517 28011823 -115774632 - AluSg SINE Alu -8 302 1 692 181 0 68 chr12 28011828 28011886 -115774569 - FLAM_A SINE Alu -185 126 66 4396 81 43 5 chr12 28011886 28012445 -115774010 - LTR19B LTR ERV1 0 580 1 692 181 0 68 chr12 28012445 28012519 -115773936 - FLAM_A SINE Alu -245 66 3 341 279 10 0 chr12 28012550 28012654 -115773801 + L1ME4a LINE L1 5955 6059 -62 1630 190 10 10 chr12 28013217 28013335 -115773120 + AluJo SINE Alu 1 118 -194 258 32 0 0 chr12 28013335 28013366 -115773089 + (CA)n Simple_repeat Simple_repeat 2 32 0 1630 190 10 10 chr12 28013366 28013542 -115772913 + AluJo SINE Alu 117 295 -17 183 184 0 0 chr12 28013560 28013598 -115772857 + GA-rich Low_complexity Low_complexity 3 40 0 241 311 63 122 chr12 28013876 28014098 -115772357 - L2 LINE L2 -36 3236 3028 2135 121 3 7 chr12 28014152 28014458 -115771997 + AluSx SINE Alu 1 305 -7 330 184 146 19 chr12 28014775 28014878 -115771577 + L1MC5 LINE L1 7815 7930 -31 1213 194 9 0 chr12 28015165 28015382 -115771073 + MER20 DNA MER1_type 1 219 0 198 345 48 48 chr12 28015857 28016025 -115770430 + L2 LINE L2 2489 2656 -658 2219 49 3 28 chr12 28016557 28016888 -115769567 + AluY SINE Alu 1 324 0 242 245 163 10 chr12 28017911 28017987 -115768468 - L1M4 LINE L1 -1568 4578 4482 2149 85 30 7 chr12 28017987 28018292 -115768163 - AluSx SINE Alu 0 312 1 242 245 163 10 chr12 28018292 28018313 -115768142 - L1M4 LINE L1 -1664 4482 4466 238 193 18 18 chr12 28018437 28018494 -115767961 - Tigger3(Golem) DNA MER2_type 0 3038 2982 * 1682 158 56 16 chr12 28018483 28018805 -115767650 - Tigger3(Golem) DNA MER2_type -878 2151 20 181 346 112 9 chr12 28019668 28019775 -115766680 + L2 LINE L2 3155 3272 0 2432 82 0 0 chr12 28021628 28021922 -115764533 - AluSg SINE Alu -16 294 1 1446 169 22 117 chr12 28022218 28022621 -115763834 - MLT1A1 LTR MaLR 0 365 1 787 228 131 19 chr12 28024547 28024815 -115761640 + L1MDa LINE L1 1911 2208 -4332 1081 215 28 20 chr12 28024820 28025067 -115761388 - AluJo SINE Alu 0 312 64 344 162 128 74 chr12 28025081 28025229 -115761226 + L1MDa LINE L1 2304 2459 -4081 2326 83 14 0 chr12 28025612 28025902 -115760553 - AluSp SINE Alu -19 294 1 274 192 0 0 chr12 28026305 28026357 -115760098 - HERVL-E LTR ERVL -5600 54 3 361 281 29 47 chr12 28026375 28026546 -115759909 - MLT2E LTR ERVL -6 622 455 2333 197 66 42 chr12 28027264 28027837 -115758618 + MER92B LTR ERV1 3 589 -47 1408 199 108 38 chr12 28027846 28028187 -115758268 - MLT1A1 LTR MaLR 0 365 1 637 161 125 36 chr12 28028263 28028431 -115758024 - LTR68 LTR ERV1 -557 183 1 360 241 229 26 chr12 28028442 28028708 -115757747 + L1MDa LINE L1 3278 3597 -2943 2181 82 0 21 chr12 28028836 28029127 -115757328 + AluSq SINE Alu 8 292 -21 22 35 0 0 chr12 28029128 28029157 -115757298 + AT_rich Low_complexity Low_complexity 1 29 0 1623 172 22 4 chr12 28029160 28029433 -115757022 - AluJo SINE Alu -31 281 4 2062 117 0 3 chr12 28029456 28029747 -115756708 - AluSq SINE Alu -23 290 1 799 177 61 37 chr12 28029759 28029923 -115756532 + AluJb SINE Alu 132 299 -13 12110 31 1 1 chr12 28030135 28032255 -115754200 - L1PA3 LINE L1 0 6155 4034 342 207 0 46 chr12 28032435 28032522 -115753933 + HsTC2 DNA Tc2 1818 1900 0 668 296 128 24 chr12 28032523 28033186 -115753269 + L1MDa LINE L1 4244 4975 -1565 279 274 115 45 chr12 28033304 28033461 -115752994 + L1MDa LINE L1 5169 5336 -1204 806 93 124 0 chr12 28033515 28033644 -115752811 + L1MB7 LINE L1 6040 6184 0 1986 99 3 21 chr12 28033654 28033936 -115752519 + AluSg SINE Alu 27 303 -7 2365 80 7 0 chr12 28033944 28034244 -115752211 + AluSp SINE Alu 1 302 -11 2054 109 0 4 chr12 28034355 28034631 -115751824 - AluY SINE Alu -22 289 15 447 230 207 0 chr12 28035073 28035208 -115751247 + MIR SINE MIR 14 176 -86 6358 37 0 0 chr12 28035212 28035919 -115750536 - L1PA5 LINE L1 -1 6153 5447 18228 60 6 0 chr12 28035919 28038248 -115748207 + L1P LINE L1 1179 3521 -2625 432 335 63 0 chr12 28038293 28038451 -115748004 - HERV16 LTR ERVL -2573 2423 2256 27 49 0 0 chr12 28038451 28038492 -115747963 + AT_rich Low_complexity Low_complexity 1 41 0 1102 306 59 40 chr12 28038515 28039109 -115747346 - HERV16 LTR ERVL -2718 2278 1674 489 196 98 0 chr12 28039116 28039228 -115747227 - L1ME2 LINE L1 -249 5915 5793 352 348 27 11 chr12 28039251 28039438 -115747017 - HERV16 LTR ERVL -4084 1680 1491 869 286 84 69 chr12 28039581 28039834 -115746621 - HERV16 LTR ERVL -3976 1020 772 2830 132 44 0 chr12 28039834 28040244 -115746211 - MSTA LTR MaLR 0 428 1 869 286 84 69 chr12 28040244 28040739 -115745716 - HERV16 LTR ERVL -4224 772 261 580 177 0 0 chr12 28040825 28040921 -115745534 - AluJb SINE Alu -9 303 208 2553 199 66 19 chr12 28040924 28041589 -115744866 - L1ME1 LINE L1 -58 6108 5413 692 164 30 0 chr12 28041597 28041731 -115744724 - L1MA10 LINE L1 -17 6317 6180 973 209 63 66 chr12 28041748 28042164 -115744291 - L1ME1 LINE L1 -327 5839 5555 1337 203 95 70 chr12 28042206 28042583 -115743872 + Charlie7 DNA MER1_type 1720 2117 -495 631 89 20 10 chr12 28042583 28042684 -115743771 - L1MA5A LINE L1 -3 6294 6193 1337 203 95 70 chr12 28042684 28042864 -115743591 + Charlie7 DNA MER1_type 2117 2291 -321 931 170 4 69 chr12 28042845 28043092 -115743363 + Charlie1 DNA MER1_type 1852 2082 -679 * 895 110 24 8 chr12 28043142 28043269 -115743186 + AluSq/x SINE Alu 5 133 -179 21 0 0 0 chr12 28043367 28043388 -115743067 + AT_rich Low_complexity Low_complexity 1 21 0 383 301 110 22 chr12 28044182 28044318 -115742137 + MIR SINE MIR 4 151 -111 22 0 0 0 chr12 28044384 28044406 -115742049 + AT_rich Low_complexity Low_complexity 1 22 0 1375 159 130 32 chr12 28044453 28044589 -115741866 - AluJb SINE Alu -8 304 183 2438 91 0 0 chr12 28044589 28044886 -115741569 - AluSc SINE Alu -12 297 1 1375 159 130 32 chr12 28044886 28045026 -115741429 - AluJb SINE Alu -129 183 1 1816 185 30 25 chr12 28045084 28045478 -115740977 + MSTD LTR MaLR 1 396 0 212 238 88 12 chr12 28045511 28045591 -115740864 - MIR SINE MIR -132 130 45 2370 97 0 0 chr12 28045738 28046036 -115740419 + AluSx SINE Alu 1 298 -14 740 255 75 82 chr12 28046235 28046544 -115739911 - L2 LINE L2 0 3313 3006 1950 114 46 4 chr12 28046544 28046825 -115739630 - AluSx SINE Alu -19 293 1 740 255 75 82 chr12 28046825 28046943 -115739512 - L2 LINE L2 -307 3006 2889 5227 121 18 10 chr12 28047296 28048165 -115738290 - L1PA13 LINE L1 0 6163 5288 1205 198 8 4 chr12 28048365 28048623 -115737832 + L1MB8 LINE L1 5920 6178 0 2039 138 21 0 chr12 28048646 28048935 -115737520 + AluSg SINE Alu 3 297 -13 285 218 109 27 chr12 28048968 28049115 -115737340 + L1ME3 LINE L1 2098 2256 -4140 1042 295 28 28 chr12 28049177 28049610 -115736845 + L1ME3 LINE L1 4803 5238 -977 1874 155 0 13 chr12 28049610 28049913 -115736542 + AluJo SINE Alu 1 299 -13 1042 295 28 28 chr12 28049913 28049988 -115736467 + L1ME3 LINE L1 5237 5311 -904 1883 142 18 0 chr12 28049993 28050275 -115736180 - AluSx SINE Alu -25 287 1 2600 97 66 2 chr12 28050332 28050757 -115735698 - HSMAR2 DNA Mariner 0 1302 851 1074 140 0 6 chr12 28050774 28050931 -115735524 - AluSg/x SINE Alu -20 292 137 5424 108 7 22 chr12 28050932 28051017 -115735438 - HSMAR2 DNA Mariner -453 849 764 2010 147 16 7 chr12 28051017 28051324 -115735131 - AluJb SINE Alu -2 310 1 5424 108 7 22 chr12 28051324 28052099 -115734356 - HSMAR2 DNA Mariner -538 764 2 2044 238 106 21 chr12 28052102 28052917 -115733538 + L1ME3 LINE L1 5340 6223 -8 887 171 0 0 chr12 28053088 28053217 -115733238 + FLAM_C SINE Alu 2 130 -13 279 0 0 0 chr12 28053259 28053290 -115733165 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 313 154 0 0 chr12 28053293 28053345 -115733110 - FLAM SINE Alu -24 109 58 899 103 48 0 chr12 28053345 28053471 -115732984 + AluJb SINE Alu 164 295 -17 445 274 61 5 chr12 28053792 28053989 -115732466 - LTR33A LTR ERVL -18 505 298 505 150 0 0 chr12 28054097 28054177 -115732278 - AluJ/FLAM SINE Alu -232 80 1 630 167 46 0 chr12 28054431 28054539 -115731916 + FLAM_C SINE Alu 12 124 -19 24 0 0 0 chr12 28054545 28054569 -115731886 + AT_rich Low_complexity Low_complexity 1 24 0 2156 111 7 0 chr12 28054695 28054992 -115731463 - AluSq SINE Alu -4 309 11 1894 156 17 0 chr12 28055157 28055452 -115731003 - AluSx SINE Alu -12 300 1 289 225 0 0 chr12 28055729 28055800 -115730655 + LTR67 LTR ERVL 487 557 0 2315 108 19 35 chr12 28055973 28056343 -115730112 + THE1B LTR MaLR 1 364 0 1890 129 3 3 chr12 28056737 28057046 -115729409 + AluY SINE Alu 1 309 -2 859 0 44 50 chr12 28057046 28057226 -115729229 + (TA)n Simple_repeat Simple_repeat 2 180 0 294 200 0 0 chr12 28057226 28057286 -115729169 + (CATATA)n Simple_repeat Simple_repeat 1 61 0 225 0 0 0 chr12 28057286 28057311 -115729144 + (TG)n Simple_repeat Simple_repeat 2 26 0 302 306 85 10 chr12 28057315 28057514 -115728941 + LTR16A1 LTR ERVL 213 426 -31 2860 3 0 0 chr12 28057518 28057827 -115728628 - AluYa5 SINE Alu -2 309 1 646 155 0 48 chr12 28057898 28058085 -115728370 + CT-rich Low_complexity Low_complexity 1 178 0 867 124 7 27 chr12 28058093 28058398 -115728057 + (TTC)n Simple_repeat Simple_repeat 1 298 0 380 214 22 11 chr12 28058398 28058487 -115727968 + CT-rich Low_complexity Low_complexity 4 93 0 463 211 19 0 chr12 28058487 28058591 -115727864 - FLAM_A SINE Alu 0 142 37 22 0 0 0 chr12 28059908 28059930 -115726525 + AT_rich Low_complexity Low_complexity 1 22 0 199 267 0 0 chr12 28060482 28060527 -115725928 - L2 LINE L2 0 3313 3269 207 210 37 25 chr12 28060585 28060666 -115725789 + GA-rich Low_complexity Low_complexity 4 85 0 224 222 0 0 chr12 28061389 28061434 -115725021 - MIR SINE MIR 0 262 218 242 342 138 0 chr12 28061475 28061627 -115724828 - MIR SINE MIR -19 243 71 264 335 40 46 chr12 28061831 28061983 -115724472 + MIR3 SINE MIR 35 185 -23 431 204 91 38 chr12 28061998 28062130 -115724325 - L1ME3A LINE L1 -26 6144 6006 527 259 167 11 chr12 28062135 28062405 -115724050 - L1ME3A LINE L1 -181 5989 5678 259 263 113 17 chr12 28063025 28063169 -115723286 + MIR3 SINE MIR 22 186 -22 2269 96 7 3 chr12 28063331 28063634 -115722821 - AluSp SINE Alu -9 304 1 1766 174 7 26 chr12 28063903 28064213 -115722242 - AluJo SINE Alu -7 305 2 372 22 0 0 chr12 28064982 28065027 -115721428 + (TG)n Simple_repeat Simple_repeat 2 46 0 14929 90 12 5 chr12 28066144 28068630 -115717825 - L1PA8 LINE L1 0 6172 3668 342 0 0 0 chr12 28068630 28068668 -115717787 + (TG)n Simple_repeat Simple_repeat 2 39 0 14929 90 12 5 chr12 28068668 28069143 -115717312 - L1PA8 LINE L1 -2504 3668 3198 1548 147 4 0 chr12 28069143 28069374 -115717081 + AluSx SINE Alu 64 295 -17 21 0 0 0 chr12 28069962 28069983 -115716472 + AT_rich Low_complexity Low_complexity 1 21 0 453 252 82 10 chr12 28070074 28070280 -115716175 - L1MC4 LINE L1 -97 7945 7725 1078 42 0 0 chr12 28070348 28070468 -115715987 + AluSp SINE Alu 13 132 -181 2434 74 0 0 chr12 28070470 28070769 -115715686 + AluY SINE Alu 1 299 -12 755 262 109 49 chr12 28070778 28071229 -115715226 - L1MC4 LINE L1 -397 7645 7168 620 135 0 0 chr12 28072208 28072297 -115714158 - AluJ/FLAM SINE Alu -223 89 1 266 340 80 69 chr12 28072999 28073024 -115713431 - L2 LINE L2 -22 3250 3227 2039 147 3 0 chr12 28073024 28073323 -115713132 - AluSx SINE Alu -12 300 1 266 340 80 69 chr12 28073323 28073585 -115712870 - L2 LINE L2 -45 3227 2960 207 0 0 0 chr12 28074274 28074297 -115712158 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 395 264 82 25 chr12 28074835 28074994 -115711461 - MIR SINE MIR -50 212 45 2107 110 6 28 chr12 28075346 28075378 -115711077 - AluSq SINE Alu -2 311 280 351 0 0 0 chr12 28075378 28075417 -115711038 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2107 110 6 28 chr12 28075417 28075702 -115710753 - AluSq SINE Alu -33 280 1 1876 102 117 7 chr12 28077296 28077570 -115708885 - AluSg1 SINE Alu -5 304 1 2058 134 10 3 chr12 28077625 28077930 -115708525 - AluSg SINE Alu -3 307 1 292 239 67 44 chr12 28078076 28078256 -115708199 - L1ME4a LINE L1 -11 6110 5927 339 340 111 0 chr12 28078394 28078556 -115707899 - L1ME4a LINE L1 -405 5716 5537 234 302 0 0 chr12 28078627 28078680 -115707775 + (CACG)n Simple_repeat Simple_repeat 2 54 0 2018 125 0 20 chr12 28079504 28079807 -115706648 - AluSx SINE Alu -15 297 1 969 202 22 0 chr12 28079819 28079997 -115706458 - FRAM SINE Alu -1 175 1 723 299 33 12 chr12 28079999 28080240 -115706215 - MIR SINE MIR -8 254 9 2554 104 14 14 chr12 28080824 28081188 -115705267 - THE1B LTR MaLR 0 364 1 1094 218 33 17 chr12 28081771 28082180 -115704275 + MLT2B1 LTR ERVL 1 466 -54 223 118 78 0 chr12 28082193 28082244 -115704211 + CT-rich Low_complexity Low_complexity 4 58 0 241 179 0 0 chr12 28082244 28082307 -115704148 + MLT2C2 LTR ERVL 420 464 0 25 51 0 0 chr12 28082309 28082348 -115704107 + AT_rich Low_complexity Low_complexity 1 39 0 1588 219 60 7 chr12 28082394 28082828 -115703627 + L1MD3 LINE L1 7529 7985 -10 2347 97 0 3 chr12 28082836 28083134 -115703321 + AluSq SINE Alu 1 297 -16 291 130 0 0 chr12 28083459 28083505 -115702950 + L1MB3 LINE L1 6099 6144 -39 1485 148 48 14 chr12 28083529 28083819 -115702636 - L1MA6 LINE L1 -2 6298 5999 737 206 85 0 chr12 28084565 28084754 -115701701 - MER3 DNA MER1_type -4 205 1 865 128 55 8 chr12 28084960 28085183 -115701272 - L1MA9 LINE L1 -5 6307 6053 203 218 168 59 chr12 28085883 28085984 -115700471 + MIR SINE MIR 42 153 -109 15111 47 1 1 chr12 28086504 28088490 -115697965 + L1P LINE L1 1135 3121 -3025 556 330 152 35 chr12 28089168 28089680 -115696775 + L2 LINE L2 2337 2908 -406 363 302 208 0 chr12 28089848 28090007 -115696448 - MER91A DNA MER1_type -1 195 4 622 99 0 0 chr12 28090966 28091057 -115695398 - MLT1C LTR MaLR -376 91 1 225 151 0 0 chr12 28091249 28091302 -115695153 + CT-rich Low_complexity Low_complexity 1 53 0 1948 145 3 3 chr12 28091811 28092129 -115694326 - AluJb SINE Alu 0 318 1 273 29 0 0 chr12 28092406 28092440 -115694015 + (CAT)n Simple_repeat Simple_repeat 1 34 0 1731 186 17 13 chr12 28093235 28093536 -115692919 + AluJb SINE Alu 1 302 -10 207 288 51 0 chr12 28093955 28094014 -115692441 + L2 LINE L2 3205 3266 -6 1171 196 0 2 chr12 28094137 28094434 -115692021 + MER2 DNA MER2_type 1 344 -1 2780 124 59 40 chr12 28094883 28095479 -115690976 + MER4B LTR ERV1 1 774 -5 1884 142 45 3 chr12 28095783 28096113 -115690342 + MER2 DNA MER2_type 1 344 0 242 220 34 0 chr12 28096254 28096313 -115690142 + L2 LINE L2 2405 2465 -849 321 215 25 0 chr12 28096395 28096474 -115689981 + L1ME2 LINE L1 6076 6156 -8 260 266 28 9 chr12 28096494 28096603 -115689852 + (TA)n Simple_repeat Simple_repeat 2 112 0 1038 261 53 57 chr12 28096615 28096743 -115689712 + L2 LINE L2 2557 2684 -629 2508 61 3 6 chr12 28096743 28097055 -115689400 - AluY SINE Alu 0 311 1 1038 261 53 57 chr12 28097055 28097445 -115689010 + L2 LINE L2 2684 3068 -245 631 232 197 10 chr12 28097485 28097683 -115688772 + MIR SINE MIR 4 238 -24 277 233 60 45 chr12 28097701 28097834 -115688621 + L2 LINE L2 3098 3232 -81 293 257 0 43 chr12 28097910 28097980 -115688475 + L2 LINE L2 3247 3313 0 1083 187 98 0 chr12 28098033 28098236 -115688219 - MER58A DNA MER1_type -1 223 1 408 241 89 9 chr12 28099261 28099373 -115687082 - MER5C DNA MER1_type -201 123 3 352 204 120 56 chr12 28099492 28099600 -115686855 + L2 LINE L2 3188 3302 -11 1804 169 7 3 chr12 28100256 28100563 -115685892 + AluJb SINE Alu 1 308 -4 1764 153 51 4 chr12 28101830 28102105 -115684350 + AluJb SINE Alu 1 288 -24 743 211 69 18 chr12 28102113 28102388 -115684067 - L1MC5 LINE L1 -71 7890 7602 1905 140 35 3 chr12 28102414 28102700 -115683755 - AluSx SINE Alu -17 295 1 495 182 34 0 chr12 28102719 28102807 -115683648 + FLAM_A SINE Alu 34 124 -18 556 230 9 0 chr12 28103282 28103395 -115683060 - MER5A DNA MER1_type -15 174 61 2143 123 0 23 chr12 28103405 28103714 -115682741 - AluSx SINE Alu 0 312 11 201 147 0 0 chr12 28103714 28103748 -115682707 - MER5A DNA MER1_type -117 72 39 1502 118 8 0 chr12 28103816 28104053 -115682402 - L1MA3 LINE L1 -3 6302 6064 1919 147 13 19 chr12 28105066 28105380 -115681075 - AluJo SINE Alu 0 312 1 422 333 113 5 chr12 28105738 28105960 -115680495 - LTR16C LTR ERVL -121 370 125 690 228 181 20 chr12 28106252 28106534 -115679921 - L1ME2 LINE L1 -69 6097 5770 403 238 66 13 chr12 28106844 28106995 -115679460 - L1M4 LINE L1 -3382 2764 2606 316 215 86 0 chr12 28107031 28107124 -115679331 + L1MEc LINE L1 2148 2248 -4148 791 240 107 8 chr12 28107164 28107527 -115678928 - L1M4 LINE L1 -3608 2538 2140 1567 98 18 0 chr12 28107551 28107776 -115678679 - L1PB3 LINE L1 -3 6151 5923 461 176 0 22 chr12 28107938 28108029 -115678426 + FLAM_A SINE Alu 43 131 -11 360 308 128 31 chr12 28108030 28108225 -115678230 - L1ME2 LINE L1 -634 5530 5317 183 235 35 96 chr12 28108379 28108494 -115677961 + L2 LINE L2 3103 3210 -103 * 225 234 13 13 chr12 28108492 28108569 -115677886 + MER5C DNA MER1_type 71 147 -177 35857 80 9 18 chr12 28108926 28115127 -115671328 - L1PA6 LINE L1 -7 6147 11 263 295 104 42 chr12 28115914 28116107 -115670348 + MIR SINE MIR 35 239 -23 208 224 0 20 chr12 28116148 28116197 -115670258 + (TG)n Simple_repeat Simple_repeat 2 49 0 259 146 218 0 chr12 28116973 28117028 -115669427 - MER5A DNA MER1_type -114 75 9 828 163 45 67 chr12 28117115 28117293 -115669162 - FAM SINE Alu -1 174 1 212 309 68 34 chr12 28117298 28117505 -115668950 + L2 LINE L2 2235 2448 -866 846 63 102 8 chr12 28118584 28118711 -115667744 - MER85 DNA T2_type 0 139 1 291 281 34 0 chr12 28118941 28119030 -115667425 - LTR33 LTR ERVL -425 96 5 483 18 0 0 chr12 28119030 28119086 -115667369 + (CA)n Simple_repeat Simple_repeat 1 56 0 26 0 0 0 chr12 28119272 28119298 -115667157 + AT_rich Low_complexity Low_complexity 1 26 0 1039 242 43 62 chr12 28119316 28119733 -115666722 + MLT1I LTR MaLR 1 409 0 194 286 18 0 chr12 28119733 28119789 -115666666 + L3b LINE CR1 1526 1582 -1 2265 104 7 3 chr12 28120273 28120572 -115665883 - AluSx SINE Alu -12 300 1 541 270 101 0 chr12 28120774 28120952 -115665503 - L3 LINE CR1 -745 832 637 632 158 0 0 chr12 28121316 28121417 -115665038 + AluJ/FLAM SINE Alu 1 101 -211 1605 180 22 33 chr12 28121520 28121882 -115664573 + MER63 DNA MER1_type 703 1060 0 477 252 46 136 chr12 28121992 28122125 -115664330 - LTR33 LTR ERVL -9 512 369 362 160 0 85 chr12 28122125 28122219 -115664236 + L1MB8 LINE L1 6087 6172 -6 477 252 46 136 chr12 28122219 28122474 -115663981 - LTR33 LTR ERVL -152 369 159 477 258 49 72 chr12 28122613 28122877 -115663578 - MIR SINE MIR 0 262 5 2374 85 10 0 chr12 28122889 28123195 -115663260 - AluSq SINE Alu -4 309 1 296 233 19 19 chr12 28123230 28123333 -115663122 + L1MC/D LINE L1 5704 5806 -2002 1219 150 40 22 chr12 28123380 28123583 -115662872 + L1MB3 LINE L1 5496 5705 -586 2351 126 54 54 chr12 28123583 28123753 -115662702 - MER65C LTR ERV1 0 461 292 1928 157 3 7 chr12 28123753 28124058 -115662397 - AluJb SINE Alu -8 304 1 2351 126 54 54 chr12 28124058 28124348 -115662107 - MER65C LTR ERV1 -168 293 1 1219 150 40 22 chr12 28124348 28124370 -115662085 + L1MB3 LINE L1 5705 5725 -566 12214 113 5 44 chr12 28124378 28126828 -115659627 + L1P3 LINE L1 2 2447 -4014 1347 250 37 61 chr12 28127511 28128122 -115658333 + L2 LINE L2 2704 3311 -2 204 216 0 0 chr12 28128769 28128806 -115657649 + CT-rich Low_complexity Low_complexity 3 39 0 1288 173 16 4 chr12 28128811 28129065 -115657390 + L1MB3 LINE L1 5925 6181 -2 487 306 47 10 chr12 28129226 28129419 -115657036 + MIR SINE MIR 27 226 -36 182 245 0 41 chr12 28131211 28131260 -115655195 + L2 LINE L2 3226 3272 0 264 284 0 11 chr12 28132288 28132376 -115654079 + L1MC5 LINE L1 7825 7911 -50 194 184 0 26 chr12 28132581 28132619 -115653836 + L3 LINE CR1 1540 1576 -1 249 103 0 0 chr12 28133547 28133586 -115652869 + tRNA-Ile-ATT tRNA tRNA 1 39 -38 230 324 184 68 chr12 28133792 28134128 -115652327 - L2 LINE L2 0 3272 2898 180 0 0 0 chr12 28134579 28134599 -115651856 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 993 203 42 0 chr12 28134601 28134760 -115651695 - AluJo SINE Alu -28 284 114 246 32 0 0 chr12 28134760 28134791 -115651664 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 993 203 42 0 chr12 28134791 28134823 -115651632 - AluJo SINE Alu -198 114 85 351 0 0 0 chr12 28134868 28134907 -115651548 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 688 144 63 0 chr12 28134907 28135018 -115651437 - FLAM_C SINE Alu -25 118 1 742 231 0 0 chr12 28136529 28136659 -115649796 - FLAM_A SINE Alu -3 130 1 24 0 0 0 chr12 28136669 28136693 -115649762 + AT_rich Low_complexity Low_complexity 1 24 0 6463 99 27 1 chr12 28137966 28138954 -115647501 + L1MA2 LINE L1 5291 6304 0 545 277 77 20 chr12 28139039 28139234 -115647221 + MIR SINE MIR 33 238 -24 16085 27 4 1 chr12 28139388 28142075 -115644380 - L1PA4 LINE L1 -3 6152 3455 2122 127 10 0 chr12 28142075 28142375 -115644080 - AluSq SINE Alu -10 303 1 212 77 26 0 chr12 28142680 28142719 -115643736 + (TC)n Simple_repeat Simple_repeat 1 40 0 257 220 17 0 chr12 28143282 28143341 -115643114 + MIR SINE MIR 57 116 -146 189 0 0 0 chr12 28143341 28143362 -115643093 + (T)n Simple_repeat Simple_repeat 1 21 0 791 187 0 15 chr12 28143797 28143931 -115642524 - FLAM_C SINE Alu -1 132 1 1252 139 0 5 chr12 28145833 28146020 -115640435 + AluSq SINE Alu 1 186 -127 2198 100 10 3 chr12 28146565 28146866 -115639589 - AluSc SINE Alu -6 303 1 2171 147 0 0 chr12 28148756 28149068 -115637387 - AluSx SINE Alu 0 312 1 2209 119 3 3 chr12 28149145 28149456 -115636999 - AluSx SINE Alu -1 311 1 21 0 0 0 chr12 28150324 28150345 -115636110 + AT_rich Low_complexity Low_complexity 1 21 0 313 297 42 8 chr12 28150961 28151079 -115635376 - MIR SINE MIR -68 140 19 1823 159 36 0 chr12 28151369 28151670 -115634785 + AluSx SINE Alu 1 312 0 467 306 50 68 chr12 28152158 28152495 -115633960 + MLT1I LTR MaLR 79 409 0 2104 135 0 13 chr12 28152792 28153103 -115633352 - AluSx SINE Alu -5 307 1 22 0 0 0 chr12 28153103 28153125 -115633330 + AT_rich Low_complexity Low_complexity 1 22 0 582 76 17 136 chr12 28153144 28153262 -115633193 + AluSg/x SINE Alu 197 300 -12 1611 238 145 4 chr12 28153264 28153810 -115632645 - LTR50 LTR ERVL -89 706 84 710 268 7 0 chr12 28153830 28153983 -115632472 + MER91A DNA MER1_type 33 186 -10 661 125 0 0 chr12 28154053 28154149 -115632306 - FRAM SINE Alu -16 160 65 925 170 20 7 chr12 28154249 28154402 -115632053 + FRAM SINE Alu 5 159 -17 1999 137 3 3 chr12 28154483 28154775 -115631680 + AluJb SINE Alu 1 292 -20 422 306 7 35 chr12 28155443 28155587 -115630868 + L2 LINE L2 3133 3272 0 419 246 57 37 chr12 28157305 28157549 -115628906 - L1ME4a LINE L1 -1 6120 5872 30 45 0 0 chr12 28157559 28157603 -115628852 + AT_rich Low_complexity Low_complexity 1 44 0 2144 143 0 0 chr12 28157668 28157969 -115628486 - AluSx SINE Alu -11 301 1 826 211 124 18 chr12 28158115 28158333 -115628122 - MIR SINE MIR -9 253 13 6412 167 23 7 chr12 28159147 28160770 -115625685 + L1PA16 LINE L1 3972 5617 -549 3471 108 2 0 chr12 28160870 28161369 -115625086 + L1PA16 LINE L1 5657 6156 -10 245 231 269 0 chr12 28162369 28162477 -115623978 - L2 LINE L2 0 3272 3136 299 340 197 7 chr12 28162667 28162814 -115623641 - MER91A DNA MER1_type -19 177 3 506 270 15 29 chr12 28162833 28162970 -115623485 - MIR SINE MIR -108 154 20 1869 131 10 28 chr12 28163134 28163451 -115623004 - AluJb SINE Alu 0 312 1 625 301 45 25 chr12 28163759 28164118 -115622337 - ERVL LTR ERVL -2060 3704 3339 1377 301 94 13 chr12 28164257 28164882 -115621573 - ERVL LTR ERVL -2139 2857 2182 343 327 7 7 chr12 28165284 28165434 -115621021 + LTR16C LTR ERVL 317 466 -25 1991 133 40 51 chr12 28165672 28165869 -115620586 - L1MA7 LINE L1 -128 6163 5965 1795 128 0 0 chr12 28165869 28166112 -115620343 - AluSx SINE Alu -69 243 1 1991 133 40 51 chr12 28166112 28166365 -115620090 - L1MA7 LINE L1 -326 5965 5718 20827 85 6 16 chr12 28166379 28170388 -115616067 - L1PA7 LINE L1 -2 6152 2184 517 102 159 11 chr12 28220480 28220568 -115565887 - FLAM_A SINE Alu -28 114 14 358 267 67 0 chr12 28220576 28220711 -115565744 + MLT1L LTR MaLR 459 602 -13 295 233 193 15 chr12 28220821 28220959 -115565496 + MIR SINE MIR 36 191 -61 27 49 0 0 chr12 28224863 28224904 -115561551 + AT_rich Low_complexity Low_complexity 1 41 0 21 82 0 0 chr12 28225568 28225617 -115560838 + AT_rich Low_complexity Low_complexity 1 49 0 1648 110 59 0 chr12 28225617 28225890 -115560565 - L1MA1 LINE L1 0 6302 6014 293 317 106 6 chr12 28226415 28226570 -115559885 + MIR3 SINE MIR 15 187 -21 996 35 0 0 chr12 28226653 28226767 -115559688 + AluY SINE Alu 187 300 -11 781 258 16 0 chr12 28226767 28226953 -115559502 + MIR SINE MIR 74 262 0 1768 108 0 88 chr12 28226975 28227271 -115559184 + AluJb SINE Alu 20 289 -23 203 291 27 95 chr12 28227316 28227464 -115558991 - L2 LINE L2 -220 3052 2915 242 236 0 0 chr12 28228363 28228418 -115558037 - L1ME4a LINE L1 -73 6048 5994 649 228 68 57 chr12 28228475 28228538 -115557917 - L1ME4a LINE L1 -233 5888 5827 2328 93 0 0 chr12 28228538 28228839 -115557616 - AluY SINE Alu -10 301 1 649 228 68 57 chr12 28228839 28229126 -115557329 - L1ME4a LINE L1 -294 5827 5534 242 163 20 20 chr12 28230451 28230500 -115555955 - L2 LINE L2 -2 3311 3263 475 284 24 8 chr12 28230606 28230733 -115555722 + MIR SINE MIR 60 188 -74 209 204 20 20 chr12 28231470 28231519 -115554936 - L2 LINE L2 -2 3311 3263 2151 145 0 3 chr12 28233120 28233431 -115553024 - AluSx SINE Alu -2 310 1 2084 87 0 108 chr12 28233937 28234272 -115552183 - AluSx SINE Alu -13 299 1 481 229 133 33 chr12 28234284 28234494 -115551961 - MLT1L LTR MaLR -326 289 59 2039 112 24 0 chr12 28235070 28235364 -115551091 - AluSx SINE Alu -11 301 1 368 271 157 18 chr12 28235774 28235940 -115550515 + MER5A DNA MER1_type 1 189 0 328 206 16 0 chr12 28236035 28236098 -115550357 + L2 LINE L2 3250 3313 0 2088 108 13 16 chr12 28236313 28236618 -115549837 + AluSx SINE Alu 1 304 -8 2079 107 0 0 chr12 28236977 28237279 -115549176 - AluY SINE Alu 0 302 1 240 113 19 38 chr12 28237298 28237351 -115549104 - L1MB2 LINE L1 -35 6136 6085 247 25 50 0 chr12 28237511 28237551 -115548904 + (TTG)n Simple_repeat Simple_repeat 1 42 0 298 307 38 14 chr12 28238345 28238451 -115548004 + MIR SINE MIR 42 147 -80 345 268 69 135 chr12 28239515 28240182 -115546273 - L1M2 LINE L1 -5519 1330 524 650 214 53 64 chr12 28241013 28241200 -115545255 + MIR SINE MIR 64 248 -14 22 35 0 0 chr12 28241482 28241511 -115544944 + AT_rich Low_complexity Low_complexity 1 29 0 453 245 200 7 chr12 28241601 28241749 -115544706 - MIR SINE MIR -62 146 5 228 86 0 0 chr12 28241947 28241982 -115544473 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 217 233 30 30 chr12 28242434 28242567 -115543888 + GA-rich Low_complexity Low_complexity 5 137 0 2323 83 17 7 chr12 28243415 28243717 -115542738 + AluSx SINE Alu 1 305 -7 294 322 13 53 chr12 28244209 28244361 -115542094 + L2 LINE L2 2890 3035 -237 636 305 16 16 chr12 28244407 28244594 -115541861 + MIR SINE MIR 31 217 -45 181 306 194 48 chr12 28244629 28244881 -115541574 + L2 LINE L2 3025 3313 0 2552 113 28 7 chr12 28245701 28246136 -115540319 - L1PA13 LINE L1 -3 6160 5717 243 0 0 0 chr12 28246858 28246885 -115539570 + (T)n Simple_repeat Simple_repeat 1 27 0 1606 209 86 16 chr12 28247147 28247578 -115538877 - L1MC4a LINE L1 0 7808 7348 1215 134 5 11 chr12 28247616 28247803 -115538652 - AluJb SINE Alu -8 304 119 265 292 14 111 chr12 28247888 28247994 -115538461 + L2 LINE L2 3143 3233 -39 1699 166 41 17 chr12 28247994 28248284 -115538171 - AluJo SINE Alu -15 297 1 265 292 14 111 chr12 28248284 28248321 -115538134 + L2 LINE L2 3233 3272 0 21 0 0 0 chr12 28248821 28248842 -115537613 + AT_rich Low_complexity Low_complexity 1 21 0 3884 164 22 28 chr12 28249198 28250412 -115536043 - L1P5 LINE L1 -555 5596 4403 3800 70 14 8 chr12 28250412 28250930 -115535525 + L1PB1 LINE L1 5630 6150 -1 206 351 98 11 chr12 28251162 28251336 -115535119 - L2 LINE L2 -384 2930 2742 1725 144 53 51 chr12 28252885 28253103 -115533352 - MER46B DNA MER2_type -2495 236 140 6306 185 28 21 chr12 28253103 28255297 -115531158 - L1PA16 LINE L1 -5 6161 3958 1725 144 53 51 chr12 28255297 28255433 -115531022 - MER46B DNA MER2_type -2591 140 6 390 345 34 8 chr12 28255445 28255709 -115530746 + L1ME4a LINE L1 5562 5832 -289 2548 173 44 26 chr12 28255772 28256315 -115530140 - MER74A LTR ERVL -1 557 5 1868 145 7 7 chr12 28256392 28256688 -115529767 + AluJo SINE Alu 1 296 -16 2198 117 0 0 chr12 28256705 28257004 -115529451 + AluSx SINE Alu 3 301 -11 398 181 55 87 chr12 28257819 28257946 -115528509 + MIR SINE MIR 61 183 -79 255 298 104 113 chr12 28258502 28258925 -115527530 + L2 LINE L2 2836 3254 -18 260 333 72 42 chr12 28259157 28259421 -115527034 - L3 LINE CR1 -690 887 616 288 343 69 0 chr12 28260147 28260249 -115526206 - L2 LINE L2 -6 3307 3199 2296 149 49 10 chr12 28260512 28260921 -115525534 - MSTB1 LTR MaLR -3 429 5 2241 88 0 7 chr12 28261120 28261428 -115525027 + AluSx SINE Alu 1 306 0 1617 176 9 46 chr12 28261875 28262198 -115524257 + AluJb SINE Alu 1 311 -1 337 257 0 0 chr12 28262198 28262268 -115524187 - MIR3 SINE MIR -46 162 93 221 268 18 0 chr12 28262490 28262546 -115523909 + L3 LINE CR1 403 459 -1118 382 262 177 0 chr12 28262758 28262899 -115523556 - MIR SINE MIR 0 262 97 1314 247 8 41 chr12 28262902 28263295 -115523160 + MLT2C1 LTR ERVL 18 397 0 957 180 114 9 chr12 28263468 28263679 -115522776 + MIR SINE MIR 16 248 -14 2154 141 0 3 chr12 28265441 28265753 -115520702 + AluSx SINE Alu 1 311 -1 8339 152 10 14 chr12 28266162 28267898 -115518557 + L1P4 LINE L1 3751 5473 -695 1223 66 0 0 chr12 28267898 28268050 -115518405 + AluY SINE Alu 144 295 -16 1416 119 31 0 chr12 28268051 28268277 -115518178 + L1P4 LINE L1 5481 5713 -450 1043 263 50 3 chr12 28268410 28268786 -115517669 - L1ME LINE L1 -521 5649 5256 7498 30 0 1 chr12 28268935 28270397 -115516058 - L1PA4 LINE L1 -1 6154 4693 2206 119 3 0 chr12 28270455 28270758 -115515697 - AluSq SINE Alu -9 304 1 1492 181 19 45 chr12 28271025 28271195 -115515260 - AluJb SINE Alu -10 302 129 198 0 0 0 chr12 28271195 28271217 -115515238 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2051 113 7 4 chr12 28271218 28271492 -115514963 - AluSx SINE Alu -36 276 2 1492 181 19 45 chr12 28271492 28271629 -115514826 - AluJb SINE Alu -182 130 1 563 260 226 6 chr12 28271857 28272034 -115514421 - MIR SINE MIR -17 245 30 2194 126 0 0 chr12 28272510 28272811 -115513644 - AluSx SINE Alu -7 305 5 317 285 44 57 chr12 28274249 28274407 -115512048 + MIR SINE MIR 107 262 0 181 152 43 65 chr12 28274620 28274666 -115511789 + MIR SINE MIR 107 151 -111 2043 94 65 0 chr12 28274789 28275065 -115511390 + AluSc SINE Alu 1 294 -15 185 308 55 104 chr12 28275647 28276050 -115510405 + L2 LINE L2 2520 2902 -412 299 252 52 105 chr12 28276070 28276159 -115510296 + L2 LINE L2 3115 3207 -106 2172 99 24 7 chr12 28276159 28276453 -115510002 - AluSq SINE Alu -12 301 3 299 252 52 105 chr12 28276453 28276573 -115509882 + L2 LINE L2 3207 3313 0 588 238 26 16 chr12 28276921 28277114 -115509341 - L1MC5 LINE L1 -48 7913 7719 516 168 32 11 chr12 28278081 28278176 -115508279 + FLAM_C SINE Alu 33 129 -14 270 0 0 0 chr12 28278209 28278239 -115508216 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr12 28278477 28278498 -115507957 + AT_rich Low_complexity Low_complexity 1 21 0 230 154 19 19 chr12 28279847 28279899 -115506556 + Tigger5 DNA MER2_type 2254 2305 -18 346 194 0 0 chr12 28279909 28279971 -115506484 - Tigger5 DNA MER2_type -2235 88 27 494 139 0 12 chr12 28279994 28280080 -115506375 + Tigger5 DNA MER2_type 2238 2322 -1 1705 95 0 9 chr12 28280259 28280491 -115505964 + AluSq SINE Alu 1 230 -83 31 0 0 0 chr12 28280491 28280522 -115505933 + AT_rich Low_complexity Low_complexity 1 31 0 359 285 117 39 chr12 28280744 28280923 -115505532 + MIR SINE MIR 70 262 0 245 333 48 9 chr12 28281183 28281288 -115505167 + L3b LINE CR1 1294 1402 -181 676 193 127 54 chr12 28285268 28285434 -115501021 - MIR SINE MIR -48 214 37 519 262 49 0 chr12 28285803 28285925 -115500530 - FLAM_C SINE Alu -4 129 2 2004 147 10 0 chr12 28285937 28286236 -115500219 - AluJb SINE Alu -10 302 1 2243 92 3 0 chr12 28287453 28287760 -115498695 - AluSp SINE Alu 0 308 1 810 222 62 23 chr12 28288657 28288833 -115497622 - MIR SINE MIR -25 237 55 2320 86 10 0 chr12 28288841 28289143 -115497312 + AluY SINE Alu 1 305 -6 388 286 67 62 chr12 28289464 28289642 -115496813 - MIR SINE MIR -50 212 34 2541 48 0 0 chr12 28290110 28290401 -115496054 - AluY SINE Alu -20 291 1 272 347 48 81 chr12 28290977 28291248 -115495207 - L2 LINE L2 -34 3238 2977 241 257 106 78 chr12 28291689 28291868 -115494587 - L2 LINE L2 -108 3164 2981 480 273 48 73 chr12 28293635 28293800 -115492655 - L3 LINE CR1 -12 1565 1405 732 338 149 22 chr12 28293800 28294675 -115491780 + L2 LINE L2 2109 3091 -181 204 176 0 0 chr12 28294762 28294796 -115491659 - MIR SINE MIR -9 253 220 204 164 73 91 chr12 28294796 28294817 -115491638 - L2 LINE L2 -14 3258 3205 408 230 182 14 chr12 28294888 28295036 -115491419 - L3 LINE CR1 -317 1260 1088 316 277 31 94 chr12 28295837 28295987 -115490468 - L3 LINE CR1 -507 1070 929 2107 120 20 0 chr12 28295987 28296279 -115490176 - AluSx SINE Alu -14 298 1 608 196 0 0 chr12 28296343 28296440 -115490015 - FLAM_C SINE Alu -19 124 28 2171 93 0 14 chr12 28296461 28296751 -115489704 - AluSx SINE Alu -26 286 1 574 297 209 42 chr12 28296788 28297428 -115489027 - L3 LINE CR1 -713 864 118 914 247 189 12 chr12 28298557 28299017 -115487438 + L2 LINE L2 2747 3313 0 281 257 50 40 chr12 28299805 28299902 -115486553 + MIR SINE MIR 58 154 -54 268 267 0 13 chr12 28299966 28300041 -115486414 - MIR SINE MIR -1 261 188 188 220 40 0 chr12 28300070 28300120 -115486335 + MIR SINE MIR 211 262 0 23 68 0 0 chr12 28300432 28300476 -115485979 + AT_rich Low_complexity Low_complexity 1 44 0 1018 168 0 12 chr12 28300681 28300848 -115485607 + FRAM SINE Alu 1 165 -1 2076 124 28 0 chr12 28300923 28301213 -115485242 - AluSx SINE Alu -14 298 1 240 314 121 32 chr12 28301815 28301939 -115484516 - L2 LINE L2 -6 3307 3173 347 256 13 0 chr12 28302642 28302720 -115483735 - MER2 DNA MER2_type 0 345 267 1371 157 0 0 chr12 28302747 28302957 -115483498 - MER2 DNA MER2_type -135 210 1 538 283 98 37 chr12 28303214 28303621 -115482834 - L1ME4a LINE L1 0 6121 5690 326 192 14 27 chr12 28303674 28303747 -115482708 + L2 LINE L2 3241 3312 -1 255 116 0 23 chr12 28305013 28305056 -115481399 - MER103 DNA DNA -123 43 2 769 188 10 57 chr12 28305423 28305615 -115480840 + AluJo SINE Alu 1 183 -129 2866 3 0 0 chr12 28305901 28306210 -115480245 - AluYa5 SINE Alu -2 309 1 753 241 127 0 chr12 28306247 28306467 -115479988 + MIR SINE MIR 3 250 -12 2030 107 7 3 chr12 28306578 28306869 -115479586 + AluSx SINE Alu 1 292 -20 505 271 142 56 chr12 28307218 28307668 -115478787 + L1ME LINE L1 5293 5781 -340 645 304 75 0 chr12 28307714 28307915 -115478540 + MIR SINE MIR 47 262 0 262 256 0 61 chr12 28308125 28308207 -115478248 - MIR SINE MIR -3 259 183 386 266 184 0 chr12 28308292 28308408 -115478047 - MIR SINE MIR -67 141 20 293 266 310 0 chr12 28309125 28309238 -115477217 + MIR3 SINE MIR 33 180 -28 24 32 0 0 chr12 28310067 28310098 -115476357 + AT_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr12 28310184 28310228 -115476227 + AT_rich Low_complexity Low_complexity 1 44 0 237 232 50 20 chr12 28311123 28311222 -115475233 - L1ME4a LINE L1 0 6121 6020 455 280 142 25 chr12 28311266 28311591 -115474864 - L1ME4a LINE L1 -199 5922 5560 2145 101 3 36 chr12 28311927 28312233 -115474222 - AluSx SINE Alu -14 298 3 203 156 0 0 chr12 28312475 28312507 -115473948 + CT-rich Low_complexity Low_complexity 1 32 0 235 272 24 40 chr12 28312507 28312632 -115473823 - L1ME4a LINE L1 -1121 5025 4903 1919 133 21 7 chr12 28312718 28313004 -115473451 - AluSx SINE Alu -22 290 1 41 78 0 0 chr12 28313466 28313556 -115472899 + AT_rich Low_complexity Low_complexity 1 90 0 24 0 0 0 chr12 28313990 28314014 -115472441 + AT_rich Low_complexity Low_complexity 1 24 0 596 274 54 62 chr12 28314943 28315184 -115471271 - MIR SINE MIR -13 249 11 297 278 82 0 chr12 28315181 28315278 -115471177 - MIR SINE MIR -72 190 86 * 457 239 71 30 chr12 28315509 28315714 -115470741 - Charlie8 DNA MER1_type -1038 1379 84 211 264 11 35 chr12 28315883 28315970 -115470485 + MIR SINE MIR 168 252 -10 277 256 124 16 chr12 28316285 28316406 -115470049 + L2 LINE L2 3179 3312 -1 889 209 17 0 chr12 28317769 28317941 -115468514 - FAM SINE Alu 0 175 1 407 196 14 119 chr12 28318991 28319063 -115467392 - MER103 DNA DNA -28 138 87 2059 109 53 0 chr12 28319063 28319347 -115467108 + AluSx SINE Alu 1 299 -13 407 196 14 119 chr12 28319347 28319417 -115467038 - MER103 DNA DNA -79 87 11 1189 177 97 66 chr12 28319535 28319823 -115466632 - AluJb SINE Alu -4 298 2 21 57 0 0 chr12 28319973 28320008 -115466447 + AT_rich Low_complexity Low_complexity 1 35 0 223 398 0 23 chr12 28320204 28320292 -115466163 - MIR SINE MIR -104 104 19 202 291 0 0 chr12 28320901 28320956 -115465499 + MIR SINE MIR 158 212 -50 255 243 9 108 chr12 28321755 28321866 -115464589 + MER102a DNA MER1_type 221 320 -10 2125 95 0 14 chr12 28322991 28323275 -115463180 + AluSx SINE Alu 12 291 -21 296 339 138 28 chr12 28323709 28324036 -115462419 - L2 LINE L2 -557 2757 2395 370 259 157 0 chr12 28324053 28324219 -115462236 + L1MEd LINE L1 1043 1234 -4971 491 284 80 60 chr12 28324374 28324824 -115461631 + L1MEd LINE L1 1869 2327 -4069 2303 78 0 7 chr12 28326089 28326384 -115460071 - AluY SINE Alu -18 293 1 224 213 38 75 chr12 28326485 28326565 -115459890 - MIR SINE MIR -128 134 58 23 0 0 0 chr12 28326927 28326950 -115459505 + AT_rich Low_complexity Low_complexity 1 23 0 646 282 139 40 chr12 28327343 28327563 -115458892 + L2 LINE L2 2565 2762 -510 2297 51 41 17 chr12 28327563 28327857 -115458598 + AluY SINE Alu 1 301 -10 646 282 139 40 chr12 28327857 28328043 -115458412 + L2 LINE L2 2762 3012 -260 749 200 0 8 chr12 28328052 28328182 -115458273 + FRAM SINE Alu 1 127 -49 303 282 316 19 chr12 28328190 28328396 -115458059 + L2 LINE L2 3006 3272 0 1902 159 13 3 chr12 28328803 28329104 -115457351 + AluJb SINE Alu 2 305 -7 477 216 9 9 chr12 28329630 28329741 -115456714 - Charlie8 DNA MER1_type -1865 552 442 23 33 0 0 chr12 28329756 28329786 -115456669 + AT_rich Low_complexity Low_complexity 1 30 0 241 375 12 0 chr12 28330022 28330102 -115456353 - Charlie8 DNA MER1_type -2336 81 1 333 0 0 0 chr12 28331537 28331574 -115454881 + (CA)n Simple_repeat Simple_repeat 2 38 0 2052 81 55 0 chr12 28331578 28331849 -115454606 - AluSq SINE Alu -27 286 1 2214 81 21 0 chr12 28333365 28333649 -115452806 + AluSq SINE Alu 1 290 -23 679 155 11 0 chr12 28333649 28333823 -115452632 + (TA)n Simple_repeat Simple_repeat 1 176 0 1363 190 75 70 chr12 28334199 28334584 -115451871 - MLT1B LTR MaLR 0 390 4 445 293 144 17 chr12 28334788 28334969 -115451486 - L2 LINE L2 -1945 1369 1166 237 343 89 0 chr12 28334974 28335120 -115451335 - L2 LINE L2 -2967 347 189 771 174 252 16 chr12 28335319 28335561 -115450894 + MER33 DNA MER1_type 25 323 -1 2269 89 0 3 chr12 28336703 28336994 -115449461 - AluSc SINE Alu -19 290 1 2000 252 89 48 chr12 28339251 28339339 -115447116 - L1ME3A LINE L1 -219 5951 5868 183 42 0 0 chr12 28339339 28339363 -115447092 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1495 184 36 22 chr12 28339372 28339649 -115446806 - AluJo SINE Alu -31 281 1 2000 252 89 48 chr12 28339649 28340449 -115446006 - L1ME3A LINE L1 -309 5861 5095 1589 194 24 58 chr12 28340449 28340825 -115445630 - MLT1A1 LTR MaLR -2 363 1 2000 252 89 48 chr12 28340825 28341755 -115444700 - L1ME3A LINE L1 -1075 5095 4037 745 269 33 33 chr12 28341757 28342088 -115444367 - L1ME3A LINE L1 -2230 3916 3586 1135 275 111 18 chr12 28342097 28343027 -115443428 - L1ME3A LINE L1 -2677 3469 2454 421 287 102 28 chr12 28343203 28343457 -115442998 + L1ME4a LINE L1 5599 5871 -250 3122 139 57 9 chr12 28343474 28343999 -115442456 - MER44D DNA MER2_type 0 605 1 308 192 39 0 chr12 28344421 28344525 -115441930 + (TA)n Simple_repeat Simple_repeat 1 108 0 1981 139 7 0 chr12 28344529 28344817 -115441638 - AluSx SINE Alu -22 290 1 473 189 160 0 chr12 28345668 28345774 -115440681 + FLAM_A SINE Alu 1 123 -10 302 333 9 19 chr12 28346541 28346646 -115439809 - MIR3 SINE MIR -31 177 74 2442 87 0 3 chr12 28347269 28347579 -115438876 - AluSc SINE Alu 0 309 1 184 320 27 27 chr12 28347627 28347702 -115438753 - L2 LINE L2 -10 3262 3188 204 310 35 0 chr12 28347815 28347873 -115438582 - L2 LINE L2 -225 3047 2988 917 164 0 7 chr12 28347876 28348022 -115438433 + FRAM SINE Alu 1 144 -32 279 377 71 15 chr12 28348078 28348346 -115438109 - L2 LINE L2 -338 2976 2694 3252 171 30 39 chr12 28348409 28348657 -115437798 - L1MB4 LINE L1 -17 6163 5914 1882 129 0 8 chr12 28348657 28348921 -115437534 + AluSx SINE Alu 40 301 -11 3252 171 30 39 chr12 28348921 28349342 -115437113 - L1MB4 LINE L1 -266 5914 5498 2534 69 0 0 chr12 28349342 28349646 -115436809 - AluY SINE Alu -7 304 1 3252 171 30 39 chr12 28349646 28349702 -115436753 - L1MB4 LINE L1 -682 5498 5443 508 336 136 35 chr12 28349713 28350311 -115436144 - L2 LINE L2 -609 2705 2048 1525 183 67 3 chr12 28350902 28351202 -115435253 - MER2 DNA MER2_type -25 320 2 324 296 133 7 chr12 28351416 28351551 -115434904 + MIR SINE MIR 39 190 -72 437 257 87 108 chr12 28351835 28352317 -115434138 + L1ME4a LINE L1 5568 6039 -82 2616 52 0 3 chr12 28353392 28353701 -115432754 + AluY SINE Alu 1 308 -3 909 179 0 0 chr12 28354289 28354434 -115432021 + FRAM SINE Alu 22 166 -10 465 198 76 25 chr12 28354832 28354989 -115431466 + MER104 DNA Tc2 16 180 0 323 322 98 41 chr12 28354991 28355597 -115430858 - L2 LINE L2 -162 3110 2473 1218 99 82 0 chr12 28355604 28355786 -115430669 + MER30 DNA MER1_type 1 197 -33 245 354 31 21 chr12 28357233 28357329 -115429126 + MIR SINE MIR 17 113 -95 1582 140 121 0 chr12 28357401 28357665 -115428790 + AluJb SINE Alu 1 296 -16 2347 118 97 0 chr12 28357955 28358345 -115428110 - MSTA LTR MaLR 0 428 1 205 414 94 8 chr12 28358971 28359099 -115427356 - L2 LINE L2 -9 3263 3125 349 234 228 8 chr12 28359492 28359713 -115426742 - MER5C DNA MER1_type 0 324 1 674 261 72 10 chr12 28359760 28359967 -115426488 + MIR SINE MIR 2 221 -41 30 45 0 0 chr12 28361023 28361067 -115425388 + AT_rich Low_complexity Low_complexity 1 44 0 1600 150 86 10 chr12 28361229 28361543 -115424912 - MER44D DNA MER2_type -1 608 1 2151 133 0 31 chr12 28361705 28362027 -115424428 + AluSx SINE Alu 1 312 0 1917 120 3 3 chr12 28363299 28363583 -115422872 - AluJb SINE Alu -8 304 21 186 43 0 0 chr12 28363828 28363851 -115422604 + (TG)n Simple_repeat Simple_repeat 2 24 0 420 295 43 7 chr12 28364185 28364324 -115422131 + MIR SINE MIR 86 229 -33 321 118 0 0 chr12 28364746 28364797 -115421658 + (CA)n Simple_repeat Simple_repeat 2 52 0 24 32 0 0 chr12 28366469 28366500 -115419955 + AT_rich Low_complexity Low_complexity 1 31 0 402 253 178 14 chr12 28367667 28367736 -115418719 - MIR SINE MIR -12 250 194 3751 109 71 12 chr12 28367736 28368340 -115418115 - L1PA16 LINE L1 -1 6165 5526 402 253 178 14 chr12 28368340 28368416 -115418039 - MIR SINE MIR -68 194 81 528 301 35 0 chr12 28368611 28368754 -115417701 + MIR SINE MIR 11 158 -104 747 310 66 0 chr12 28368760 28368973 -115417482 + MIR SINE MIR 4 230 -32 745 178 185 0 chr12 28369993 28370150 -115416305 - MER5A DNA MER1_type -3 186 1 350 287 30 10 chr12 28370378 28370479 -115415976 - L2 LINE L2 -12 3260 3158 535 148 46 9 chr12 28370549 28370657 -115415798 + MER63 DNA MER1_type 490 601 -459 1460 209 0 0 chr12 28370657 28370906 -115415549 - AluJo SINE Alu -63 249 1 229 260 0 0 chr12 28371135 28371185 -115415270 + L2 LINE L2 3264 3313 0 1439 186 23 72 chr12 28371355 28371742 -115414713 + MLT1A2 LTR MaLR 1 368 -6 274 308 55 11 chr12 28372549 28372640 -115413815 + MIR3 SINE MIR 11 105 -103 513 226 80 0 chr12 28372660 28372797 -115413658 + MLT1B LTR MaLR 1 148 -242 308 191 32 0 chr12 28372795 28372858 -115413597 + MLT1B LTR MaLR 326 390 0 * 198 314 0 0 chr12 28372895 28372946 -115413509 + L2 LINE L2 3204 3254 -18 * 231 209 0 0 chr12 28372912 28372955 -115413500 + MIR SINE MIR 217 259 -3 293 194 237 43 chr12 28373082 28373175 -115413280 - MIR SINE MIR -126 136 26 2161 110 0 0 chr12 28373721 28374044 -115412411 - AluY SINE Alu 0 323 1 597 158 18 0 chr12 28374734 28374848 -115411607 + LTR16C LTR ERVL 354 469 -22 249 152 0 22 chr12 28375176 28375222 -115411233 + MER75 DNA T2_type 469 513 -1 196 327 19 45 chr12 28375621 28375777 -115410678 - L2 LINE L2 -820 2494 2343 202 264 0 75 chr12 28375977 28376030 -115410425 - L3 LINE CR1 -102 1475 1427 508 208 190 18 chr12 28376038 28376259 -115410196 + MIR SINE MIR 4 262 0 263 291 171 17 chr12 28378758 28378875 -115407580 + MER91A DNA MER1_type 62 196 0 23 33 0 0 chr12 28378967 28378997 -115407458 + AT_rich Low_complexity Low_complexity 1 30 0 226 238 57 9 chr12 28380264 28380369 -115406086 + L1M4 LINE L1 4300 4409 -1737 1665 161 6 74 chr12 28380555 28380878 -115405577 + AluJb SINE Alu 1 301 -11 433 281 92 69 chr12 28380931 28381291 -115405164 + L1M4 LINE L1 4672 5039 -1107 41442 44 3 1 chr12 28381292 28387428 -115399027 + L1PA4 LINE L1 3 6150 -5 26 0 0 0 chr12 28387428 28387454 -115399001 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr12 28387539 28387582 -115398873 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr12 28387724 28387759 -115398696 + AT_rich Low_complexity Low_complexity 1 35 0 1057 132 0 18 chr12 28387801 28387968 -115398487 - AluJb SINE Alu -14 298 135 1379 163 4 9 chr12 28388009 28388242 -115398213 + AluJo SINE Alu 1 232 -80 2107 192 12 23 chr12 28388250 28388839 -115397616 - L1M LINE L1 -743 5403 4840 3560 230 70 28 chr12 28389259 28389373 -115397082 + L1M2 LINE L1 2533 2641 -4924 189 0 0 0 chr12 28389373 28389394 -115397061 + (CA)n Simple_repeat Simple_repeat 2 22 0 3560 230 70 28 chr12 28389394 28390564 -115395891 + L1M2 LINE L1 2641 3887 -3678 864 184 35 29 chr12 28390564 28390738 -115395717 + FAM SINE Alu 1 175 0 3560 230 70 28 chr12 28390738 28391585 -115394870 + L1M2 LINE L1 3887 4697 -2868 1566 222 19 26 chr12 28391593 28392021 -115394434 + L1MA9 LINE L1 5839 6263 -49 861 265 56 20 chr12 28392772 28393021 -115393434 + MIR SINE MIR 5 262 0 1535 183 20 23 chr12 28393354 28393654 -115392801 + AluJo SINE Alu 1 299 -13 280 299 204 25 chr12 28394132 28394333 -115392122 + MIR SINE MIR 18 254 -8 2328 104 0 0 chr12 28394390 28394698 -115391757 + AluY SINE Alu 1 308 -3 1822 160 16 29 chr12 28394997 28395310 -115391145 + AluJo SINE Alu 1 309 -3 2081 128 0 10 chr12 28395376 28395672 -115390783 + AluSg SINE Alu 1 293 -17 2303 172 10 5 chr12 28395906 28396296 -115390159 - MSTD LTR MaLR 0 396 5 369 43 0 0 chr12 28396702 28396749 -115389706 + (CA)n Simple_repeat Simple_repeat 1 47 0 1135 89 0 20 chr12 28397954 28398100 -115388355 + AluSx SINE Alu 1 143 -169 457 145 40 0 chr12 28398100 28398176 -115388279 - MSTD LTR MaLR -224 172 94 1124 131 0 0 chr12 28398176 28398329 -115388126 + AluSx SINE Alu 148 300 -12 2469 64 10 10 chr12 28400007 28400318 -115386137 - AluY SINE Alu 0 311 1 452 253 198 0 chr12 28400362 28400524 -115385931 + MIR3 SINE MIR 9 202 -6 1807 134 55 0 chr12 28400560 28400867 -115385588 + MER33 DNA MER1_type 1 324 0 24 77 0 0 chr12 28401911 28401963 -115384492 + AT_rich Low_complexity Low_complexity 1 52 0 367 181 84 0 chr12 28402099 28402182 -115384273 - MLT1J2 LTR MaLR -9 441 352 449 329 48 29 chr12 28402233 28402440 -115384015 - MLT1K LTR MaLR -158 430 220 261 307 150 41 chr12 28402843 28403136 -115383319 - L2 LINE L2 -741 2573 2249 352 258 67 8 chr12 28403144 28403264 -115383191 + MIR SINE MIR 102 228 -34 213 286 117 0 chr12 28403674 28403751 -115382704 - L2 LINE L2 -49 3223 3138 1078 180 16 16 chr12 28403902 28404091 -115382364 - MER5A DNA MER1_type 0 189 1 2435 212 66 50 chr12 28404423 28405088 -115381367 - LTR8 LTR ERV1 0 691 16 198 0 0 0 chr12 28405508 28405530 -115380925 + (T)n Simple_repeat Simple_repeat 1 22 0 639 230 84 34 chr12 28406126 28406329 -115380126 + MIR SINE MIR 51 262 0 1532 147 0 32 chr12 28406507 28406759 -115379696 + AluJb SINE Alu 1 244 -68 366 187 143 77 chr12 28407745 28407954 -115378501 - L1ME4a LINE L1 0 6121 5899 293 277 98 54 chr12 28407975 28408159 -115378296 - HAL1 LINE L1 -12 2495 2304 311 341 18 24 chr12 28408191 28408355 -115378100 - L1ME4a LINE L1 -342 5779 5617 676 253 77 21 chr12 28409221 28409454 -115377001 - MIR SINE MIR 0 262 17 4000 157 82 46 chr12 28409545 28409579 -115376876 - L1MB2 LINE L1 -4 6167 6136 1897 118 57 7 chr12 28409579 28409858 -115376597 - AluSx SINE Alu -19 293 1 4000 157 82 46 chr12 28409858 28410865 -115375590 - L1MB2 LINE L1 -35 6136 5100 491 257 9 0 chr12 28411179 28411288 -115375167 - MER117 DNA MER1_type -82 115 6 227 243 84 28 chr12 28411369 28411476 -115374979 - MER103 DNA DNA -52 114 2 279 0 0 0 chr12 28412056 28412087 -115374368 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr12 28412169 28412200 -115374255 + AT_rich Low_complexity Low_complexity 1 31 0 529 158 0 0 chr12 28412460 28412542 -115373913 - AluSg/x SINE Alu -23 287 206 892 246 33 0 chr12 28412708 28412891 -115373564 + MER5A DNA MER1_type 1 189 0 1078 129 0 148 chr12 28413680 28413936 -115372519 - MER20 DNA MER1_type 0 219 2 189 0 0 0 chr12 28414063 28414084 -115372371 + (TC)n Simple_repeat Simple_repeat 1 21 0 244 364 40 35 chr12 28414105 28414333 -115372122 + L2 LINE L2 964 1192 -2122 2212 159 16 16 chr12 28414430 28414795 -115371660 - MLT1A1 LTR MaLR 0 365 1 229 82 41 20 chr12 28415062 28415111 -115371344 + A-rich Low_complexity Low_complexity 5 54 0 1079 178 0 0 chr12 28415663 28415826 -115370629 + FRAM SINE Alu 1 163 -3 214 195 0 0 chr12 28416087 28416128 -115370327 + T-rich Low_complexity Low_complexity 1 41 0 1028 325 188 12 chr12 28416266 28417155 -115369300 + L2 LINE L2 1456 2500 -814 3837 183 30 26 chr12 28417251 28419516 -115366939 + L1MA4 LINE L1 6 2260 -4222 2045 142 3 7 chr12 28419516 28419819 -115366636 + AluJb SINE Alu 1 302 -10 3837 183 30 26 chr12 28419819 28421150 -115365305 + L1MA4 LINE L1 2260 3584 -2898 1601 162 22 67 chr12 28421150 28421464 -115364991 - AluJb SINE Alu -12 300 1 3837 183 30 26 chr12 28421464 28423744 -115362711 + L1MA4 LINE L1 3584 6185 -297 363 171 57 0 chr12 28423757 28423845 -115362610 + L1MB3 LINE L1 6087 6179 -4 832 158 73 0 chr12 28423851 28424016 -115362439 - MER53 DNA DNA -12 177 1 1146 185 56 85 chr12 28424258 28424434 -115362021 - MLT1A2 LTR MaLR 0 432 252 2283 126 0 0 chr12 28424434 28424744 -115361711 - AluSg SINE Alu 0 310 1 1146 185 56 85 chr12 28424744 28425028 -115361427 - MLT1A2 LTR MaLR -180 252 1 278 184 20 0 chr12 28425121 28425170 -115361285 + MER110 LTR ERV1 354 403 -88 1048 193 11 0 chr12 28425277 28425464 -115360991 - MER5A DNA MER1_type 0 189 1 321 202 26 114 chr12 28425464 28425578 -115360877 - MER5B DNA MER1_type -74 104 1 339 313 53 34 chr12 28425589 28425797 -115360658 + L2 LINE L2 2672 2883 -431 488 187 140 57 chr12 28425948 28426018 -115360437 + MER5A DNA MER1_type 4 67 -122 1675 126 112 4 chr12 28426018 28426287 -115360168 + AluJb SINE Alu 1 298 -14 488 187 140 57 chr12 28426287 28426385 -115360070 + MER5A DNA MER1_type 67 189 0 408 320 96 32 chr12 28426387 28426637 -115359818 + L2 LINE L2 3007 3272 0 424 299 65 23 chr12 28426650 28426877 -115359578 + MIR SINE MIR 16 248 -14 700 222 0 0 chr12 28429690 28429816 -115356639 + MER82 DNA MER2_type 1 126 -527 1062 223 100 4 chr12 28429966 28430195 -115356260 + MER82 DNA MER2_type 116 366 -287 499 256 70 35 chr12 28430166 28430338 -115356117 + MER82 DNA MER2_type 470 647 -6 * 382 202 18 44 chr12 28430718 28430762 -115355693 - L1MA4A LINE L1 -2 6301 6258 1089 149 25 45 chr12 28430762 28431035 -115355420 - L1PB4 LINE L1 -26 6130 5683 1621 218 7 0 chr12 28431035 28431329 -115355126 - AluJo SINE Alu -16 296 1 1089 149 25 45 chr12 28431329 28431413 -115355042 - L1PB4 LINE L1 -473 5683 5599 344 218 90 58 chr12 28432367 28432523 -115353932 - L1ME4a LINE L1 0 6121 5961 1790 169 4 0 chr12 28432547 28432826 -115353629 - AluJb SINE Alu -32 280 1 3085 60 0 3 chr12 28433118 28433482 -115352973 - L1PA7 LINE L1 0 6154 5792 253 276 126 0 chr12 28433483 28433570 -115352885 - L1ME4a LINE L1 -293 5828 5731 383 271 103 19 chr12 28433869 28434024 -115352431 - L1ME4a LINE L1 -391 5730 5563 325 216 52 169 chr12 28434124 28434471 -115351984 + L1ME4a LINE L1 5618 5881 -240 2179 103 3 19 chr12 28434471 28434782 -115351673 + AluSp SINE Alu 1 306 -7 325 216 52 169 chr12 28434782 28434971 -115351484 + L1ME4a LINE L1 5881 6091 -30 845 147 0 0 chr12 28435010 28435126 -115351329 - FLAM_A SINE Alu -17 116 1 2158 124 14 65 chr12 28435302 28435657 -115350798 + MER1B DNA MER1_type 1 337 0 803 206 116 0 chr12 28435764 28435919 -115350536 + MER45A DNA AcHobo 6 178 0 258 286 0 0 chr12 28435960 28436023 -115350432 - MIR SINE MIR -50 212 150 28 0 0 0 chr12 28436718 28436746 -115349709 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr12 28436865 28436897 -115349558 + AT_rich Low_complexity Low_complexity 1 32 0 838 259 123 45 chr12 28437076 28437146 -115349309 - MLT1J LTR MaLR -25 486 423 2369 80 0 7 chr12 28437146 28437448 -115349007 + AluSx SINE Alu 1 300 -12 2547 63 0 0 chr12 28437448 28437749 -115348706 + AluY SINE Alu 1 301 -10 2730 116 9 35 chr12 28437759 28438181 -115348274 + L1PA15 LINE L1 5754 6164 -1 838 259 123 45 chr12 28438181 28438538 -115347917 - MLT1J LTR MaLR -96 415 13 23 33 0 0 chr12 28438587 28438617 -115347838 + AT_rich Low_complexity Low_complexity 1 30 0 512 276 37 0 chr12 28438653 28438787 -115347668 + MIR SINE MIR 98 236 -26 2776 110 28 25 chr12 28438792 28439229 -115347226 - Tigger2 DNA MER2_type -1 2717 2280 395 174 0 0 chr12 28439227 28439296 -115347159 - Tigger2 DNA MER2_type -2649 69 1 * 944 114 25 32 chr12 28439588 28439746 -115346709 + MER2 DNA MER2_type 53 209 -136 2146 108 21 0 chr12 28439799 28440087 -115346368 - L1PA15 LINE L1 -7 6158 5865 277 331 41 8 chr12 28441075 28441196 -115345259 - MIR SINE MIR -43 219 95 2325 102 0 6 chr12 28441792 28442107 -115344348 - AluSq SINE Alu 0 313 1 2114 128 0 26 chr12 28442967 28443280 -115343175 + AluJb SINE Alu 1 305 -7 2490 69 0 25 chr12 28443282 28443599 -115342856 + AluY SINE Alu 3 311 0 203 238 0 0 chr12 28443685 28443727 -115342728 + MIR SINE MIR 15 56 -206 423 295 132 26 chr12 28444179 28444406 -115342049 - MIR SINE MIR -9 253 3 2149 105 34 0 chr12 28444680 28444976 -115341479 + AluSx SINE Alu 1 306 -6 345 246 164 82 chr12 28445930 28446101 -115340354 - MER5A DNA MER1_type -1 188 4 439 268 23 91 chr12 28446240 28446460 -115339995 + MIR SINE MIR 37 241 -21 280 321 105 19 chr12 28446590 28446752 -115339703 - MIR SINE MIR -74 188 13 1187 224 5 0 chr12 28446813 28447032 -115339423 - MER58A DNA MER1_type 0 224 5 838 148 31 0 chr12 28447090 28447218 -115339237 - MER3 DNA MER1_type -77 132 1 354 333 65 25 chr12 28447273 28447436 -115339019 + MIR SINE MIR 43 212 -50 575 270 36 16 chr12 28448428 28448676 -115337779 + L1ME LINE L1 5523 5775 -346 1173 282 48 27 chr12 28450166 28450726 -115335729 + L1MC4a LINE L1 5320 5891 -1917 410 242 51 80 chr12 28451856 28452113 -115334342 - MLT1C LTR MaLR -198 269 18 590 268 88 26 chr12 28452646 28453034 -115333421 - L1MC4 LINE L1 -91 7951 7540 25 51 0 0 chr12 28453871 28453910 -115332545 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 28454229 28454250 -115332205 + AT_rich Low_complexity Low_complexity 1 21 0 267 185 31 15 chr12 28454370 28454435 -115332020 - L1M LINE L1 -972 5372 5307 8755 205 38 9 chr12 28454445 28457472 -115328983 - L1 LINE L1 -3036 4172 1054 788 294 115 23 chr12 28457472 28457993 -115328462 - L1M2b LINE L1 -5587 1622 1054 1963 153 9 168 chr12 28457993 28458095 -115328360 - MLT2B3 LTR ERVL 0 554 437 2676 96 3 8 chr12 28458095 28458461 -115327994 + THE1B LTR MaLR 1 364 0 1963 153 9 168 chr12 28458461 28459017 -115327438 - MLT2B3 LTR ERVL -117 437 1 2526 153 16 19 chr12 28459044 28459469 -115326986 + MSTB LTR MaLR 3 426 0 2122 167 146 0 chr12 28459490 28459956 -115326499 - L1M2b LINE L1 -6494 715 182 1665 250 32 66 chr12 28459955 28460819 -115325636 - L1MEc LINE L1 -2432 3783 2949 * 1985 130 3 23 chr12 28460844 28461143 -115325312 - AluSx SINE Alu -19 293 1 1751 219 17 33 chr12 28461144 28461277 -115325178 - L1MEc LINE L1 -3252 2963 2829 1919 158 14 0 chr12 28461277 28461569 -115324886 - AluJb SINE Alu -16 296 1 1751 219 17 33 chr12 28461569 28461955 -115324500 - L1MEc LINE L1 -3386 2829 2452 1775 160 7 23 chr12 28461956 28462263 -115324192 - AluJo SINE Alu -6 306 5 3850 271 55 49 chr12 28462313 28462651 -115323804 - L1MEc LINE L1 -4352 2044 1710 2050 99 56 0 chr12 28462651 28462935 -115323520 + AluSx SINE Alu 1 300 -12 3850 271 55 49 chr12 28462935 28463201 -115323254 - L1MEc LINE L1 -4686 1710 1447 1693 93 0 0 chr12 28463201 28463406 -115323049 + AluSc SINE Alu 88 292 -17 3850 271 55 49 chr12 28463406 28463966 -115322489 - L1MEc LINE L1 -4949 1447 892 2135 106 22 26 chr12 28463966 28464278 -115322177 - AluSx SINE Alu -1 311 1 3850 271 55 49 chr12 28464278 28465107 -115321348 - L1MEc LINE L1 -5504 892 37 392 350 0 8 chr12 28465167 28465290 -115321165 + L2 LINE L2 3189 3310 -3 4084 212 41 24 chr12 28465437 28466756 -115319699 - L1MD2 LINE L1 -2 6357 5015 2274 123 0 0 chr12 28467582 28467883 -115318572 - AluSx SINE Alu -11 301 1 1713 206 34 30 chr12 28468626 28469080 -115317375 + L1ME1 LINE L1 5722 6334 0 1717 155 0 27 chr12 28469182 28469478 -115316977 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr12 28469653 28469674 -115316781 + AT_rich Low_complexity Low_complexity 1 21 0 188 239 131 77 chr12 28470094 28470224 -115316231 + L2 LINE L2 3173 3309 -4 1906 132 10 20 chr12 28470242 28470538 -115315917 - AluSx SINE Alu -17 295 3 327 309 115 26 chr12 28470583 28470774 -115315681 - L1ME4a LINE L1 -79 6042 5835 902 109 0 0 chr12 28470947 28471066 -115315389 + AluJb SINE Alu 1 119 -193 5791 78 5 2 chr12 28471066 28471879 -115314576 + L1PA14 LINE L1 5347 6161 0 1226 162 5 5 chr12 28471885 28472076 -115314379 + AluJb SINE Alu 104 294 -18 2159 87 0 16 chr12 28472997 28473342 -115313113 - L1PA7 LINE L1 0 6154 5851 193 301 0 41 chr12 28473478 28473551 -115312904 + L2 LINE L2 3000 3069 -244 227 288 163 38 chr12 28473731 28473915 -115312540 + L2 LINE L2 3106 3312 -1 293 261 9 0 chr12 28474842 28474953 -115311502 + (TA)n Simple_repeat Simple_repeat 1 112 0 287 118 0 73 chr12 28475235 28475303 -115311152 - L1M LINE L1 -836 5338 5276 1640 168 41 14 chr12 28476126 28476418 -115310037 + AluJb SINE Alu 1 300 -12 4393 166 18 20 chr12 28477374 28478267 -115308188 + L1MB7 LINE L1 5272 6162 -22 21 82 0 0 chr12 28478673 28478722 -115307733 + AT_rich Low_complexity Low_complexity 1 49 0 2608 49 0 0 chr12 28479803 28480111 -115306344 + AluY SINE Alu 1 308 -3 227 328 46 38 chr12 28480398 28480529 -115305926 - MIR3 SINE MIR -17 191 60 332 134 30 30 chr12 28481453 28481520 -115304935 + LTR67 LTR ERVL 491 557 0 28 29 0 0 chr12 28481589 28481624 -115304831 + AT_rich Low_complexity Low_complexity 1 35 0 264 294 50 59 chr12 28482106 28482204 -115304251 - MER5B DNA MER1_type -15 163 65 2353 84 3 0 chr12 28482204 28482501 -115303954 - AluSq SINE Alu -15 298 1 264 294 50 59 chr12 28482501 28482521 -115303934 - MER5B DNA MER1_type -113 65 46 281 330 24 30 chr12 28483056 28483228 -115303227 - MER5A DNA MER1_type -1 188 6 603 294 37 9 chr12 28484352 28484566 -115301889 + LTR16A LTR ERVL 225 444 -6 924 109 45 9 chr12 28484574 28484839 -115301616 - MER89 LTR ERV1 0 559 240 232 194 129 0 chr12 28484851 28484913 -115301542 + MIR SINE MIR 123 192 -70 1383 263 101 30 chr12 28485075 28485619 -115300836 + L2 LINE L2 2447 3036 -277 3310 164 46 5 chr12 28485619 28486270 -115300185 + L1MB7 LINE L1 5465 6142 -42 467 234 86 76 chr12 28486270 28486467 -115299988 + L2 LINE L2 3023 3221 -92 761 264 42 19 chr12 28486679 28486891 -115299564 - MIR SINE MIR -26 236 20 366 341 41 8 chr12 28486906 28487029 -115299426 + L2 LINE L2 3140 3266 -6 959 200 0 0 chr12 28487031 28487201 -115299254 + FRAM SINE Alu 1 169 -7 524 241 35 0 chr12 28487730 28487871 -115298584 - MLT1L LTR MaLR -5 610 465 1465 175 0 105 chr12 28488264 28488596 -115297859 - AluJb SINE Alu -4 298 2 416 204 76 23 chr12 28488641 28488773 -115297682 - L1MC4 LINE L1 -27 8015 7877 186 43 0 0 chr12 28488786 28488809 -115297646 + (TC)n Simple_repeat Simple_repeat 2 24 0 1111 123 39 0 chr12 28488809 28488963 -115297492 - AluJb SINE Alu -23 289 130 216 212 0 0 chr12 28488964 28489030 -115297425 + T-rich Low_complexity Low_complexity 1 66 0 1720 231 36 10 chr12 28489071 28489573 -115296882 - L1MC4 LINE L1 -197 7845 7331 325 276 133 8 chr12 28489722 28489882 -115296573 - MIR3 SINE MIR -64 144 7 229 254 16 131 chr12 28490392 28490514 -115295941 + MIR SINE MIR 25 132 -76 573 114 86 0 chr12 28490625 28490730 -115295725 + MLT1B LTR MaLR 2 115 -275 30 59 0 0 chr12 28490730 28490781 -115295674 + AT_rich Low_complexity Low_complexity 1 51 0 828 183 17 23 chr12 28491555 28491797 -115294658 + MLT1B LTR MaLR 95 390 0 469 184 9 79 chr12 28491799 28491830 -115294625 + MIR SINE MIR 87 119 -143 801 224 35 11 chr12 28491830 28492004 -115294451 - MER45A DNA AcHobo 0 178 1 469 184 9 79 chr12 28492004 28492086 -115294369 + MIR SINE MIR 119 192 -70 1939 160 32 8 chr12 28492956 28493332 -115293123 + LTR45B LTR ERV1 1 385 -104 2165 81 34 30 chr12 28493597 28493895 -115292560 - AluSg SINE Alu -11 299 1 22 35 0 0 chr12 28494148 28494177 -115292278 + AT_rich Low_complexity Low_complexity 1 29 0 495 217 96 0 chr12 28494644 28494759 -115291696 + MIR SINE MIR 23 148 -114 1348 112 8 97 chr12 28494795 28495054 -115291401 - MER46A DNA MER2_type 0 236 1 184 286 95 0 chr12 28495707 28495770 -115290685 - MIR SINE MIR -115 147 79 2186 111 3 3 chr12 28495991 28496288 -115290167 + AluSg SINE Alu 1 297 -13 21 0 0 0 chr12 28497311 28497332 -115289123 + AT_rich Low_complexity Low_complexity 1 21 0 235 355 0 11 chr12 28498075 28498168 -115288287 - MIR SINE MIR -14 248 157 368 234 157 49 chr12 28498627 28498789 -115287666 + MIR SINE MIR 18 192 -64 428 321 64 9 chr12 28498807 28498857 -115287598 + L3 LINE CR1 1331 1377 -200 2307 69 3 20 chr12 28498857 28499160 -115287295 - AluSp SINE Alu -15 298 1 428 321 64 9 chr12 28499160 28499327 -115287128 + L3 LINE CR1 1377 1560 -17 490 225 38 41 chr12 28500553 28500710 -115285745 - MIR SINE MIR -62 146 30 325 306 113 31 chr12 28501246 28501406 -115285049 + MIR SINE MIR 20 192 -70 2041 119 17 3 chr12 28501490 28501792 -115284663 + AluSx SINE Alu 1 306 -6 26 30 0 0 chr12 28502729 28502762 -115283693 + GC_rich Low_complexity Low_complexity 1 33 0 216 0 0 0 chr12 28504183 28504207 -115282248 + (A)n Simple_repeat Simple_repeat 1 24 0 2288 101 3 7 chr12 28505219 28505527 -115280928 + AluSq SINE Alu 1 307 -6 1802 153 23 7 chr12 28505911 28506211 -115280244 - AluJb SINE Alu -7 305 1 2055 128 0 0 chr12 28506605 28506914 -115279541 - AluSx SINE Alu 0 311 3 2255 102 0 0 chr12 28508079 28508364 -115278091 + AluSx SINE Alu 1 285 -27 662 251 134 73 chr12 28509241 28509719 -115276736 + MLT1J LTR MaLR 1 507 -4 548 266 32 13 chr12 28509792 28509950 -115276505 + MIR SINE MIR 28 188 -74 1972 117 7 30 chr12 28509971 28510269 -115276186 - AluSx SINE Alu -21 291 1 433 217 286 32 chr12 28510572 28510761 -115275694 + MIR SINE MIR 5 241 -21 917 169 91 0 chr12 28511677 28511831 -115274624 - FAM SINE Alu -7 168 1 648 232 173 36 chr12 28511987 28512207 -115274248 - MIR SINE MIR 0 262 13 387 309 99 20 chr12 28512278 28512530 -115273925 - L2 LINE L2 -997 2317 2046 4590 173 59 73 chr12 28513758 28514044 -115272411 - MER45B DNA AcHobo -543 1038 750 1525 180 56 0 chr12 28514044 28514351 -115272104 - AluJb SINE Alu 0 324 3 4590 173 59 73 chr12 28514351 28514930 -115271525 - MER45B DNA AcHobo -831 750 186 2552 131 46 10 chr12 28514930 28515341 -115271114 - MSTB LTR MaLR 0 426 1 4590 173 59 73 chr12 28515341 28515516 -115270939 - MER45B DNA AcHobo -1395 186 10 2280 89 0 3 chr12 28515794 28516085 -115270370 - AluSg SINE Alu -20 290 1 321 175 188 0 chr12 28517087 28517167 -115269288 - MIR SINE MIR -49 213 119 197 235 0 20 chr12 28517268 28517319 -115269136 + L2 LINE L2 3261 3310 -3 207 297 0 69 chr12 28517480 28517524 -115268931 + MIR SINE MIR 127 172 -90 1193 187 9 9 chr12 28517524 28517743 -115268712 + MER20 DNA MER1_type 1 219 0 207 297 0 69 chr12 28517743 28517799 -115268656 + MIR SINE MIR 172 220 -42 354 285 38 32 chr12 28518359 28518517 -115267938 - L1ME4a LINE L1 -1 6120 5962 1102 150 39 0 chr12 28518719 28518899 -115267556 - AluJo SINE Alu -14 298 112 262 191 0 0 chr12 28518899 28518941 -115267514 + MER20 DNA MER1_type 178 219 0 333 203 100 0 chr12 28519126 28519198 -115267257 - AluJ/FLAM SINE Alu -236 66 1 334 279 123 54 chr12 28519442 28519718 -115266737 - L1M4 LINE L1 -746 5400 5106 439 312 69 37 chr12 28520602 28520742 -115265713 + MIR SINE MIR 29 163 -99 1281 162 162 55 chr12 28520742 28521051 -115265404 - MER2 DNA MER2_type -2 342 1 439 312 69 37 chr12 28521051 28521070 -115265385 + MIR SINE MIR 163 180 -82 541 105 13 0 chr12 28521070 28521146 -115265309 + MADE1 DNA Mariner 3 79 -1 439 312 69 37 chr12 28521146 28521174 -115265281 + MIR SINE MIR 180 223 -39 1899 168 3 7 chr12 28522535 28522832 -115263623 - AluJo SINE Alu -12 300 5 7555 48 11 1 chr12 28522981 28524048 -115262407 + L1PA7 LINE L1 5077 6152 -2 272 248 172 27 chr12 28524843 28525027 -115261428 + MIR SINE MIR 2 216 -46 1822 139 45 7 chr12 28525385 28525672 -115260783 + AluJb SINE Alu 1 298 -14 824 255 153 25 chr12 28526172 28526576 -115259879 - LTR16A1 LTR ERVL -1 456 1 187 283 0 0 chr12 28528614 28528660 -115257795 + MIR SINE MIR 12 57 -205 199 156 0 0 chr12 28529248 28529280 -115257175 - MIR SINE MIR -150 112 81 227 174 0 65 chr12 28529307 28529353 -115257102 - HsTC2 DNA Tc2 -1816 82 40 190 311 0 16 chr12 28529377 28529438 -115257017 - MIR SINE MIR -183 79 20 35 0 0 0 chr12 28529626 28529661 -115256794 + AT_rich Low_complexity Low_complexity 1 35 0 305 248 78 78 chr12 28529674 28529827 -115256628 - MIR SINE MIR -96 166 14 314 256 35 12 chr12 28530651 28530737 -115255718 + MIR3 SINE MIR 113 200 -8 2696 106 132 2 chr12 28531339 28531765 -115254690 - MER31A LTR ERV1 -1 484 4 202 143 29 0 chr12 28532324 28532359 -115254096 + MER91B DNA MER1_type 32 67 -123 827 311 112 49 chr12 28533081 28533673 -115252782 + L3 LINE CR1 694 1322 -255 2165 88 17 10 chr12 28535893 28536187 -115250268 - AluY SINE Alu -15 296 1 273 29 0 0 chr12 28536912 28536946 -115249509 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 252 0 0 0 chr12 28537122 28537150 -115249305 + (CA)n Simple_repeat Simple_repeat 2 29 0 324 48 0 0 chr12 28537251 28537293 -115249162 + (CA)n Simple_repeat Simple_repeat 2 43 0 1567 175 25 41 chr12 28537508 28537822 -115248633 - AluJo SINE Alu -3 309 1 2220 87 10 0 chr12 28537833 28538121 -115248334 - AluSg SINE Alu -19 291 1 351 286 193 33 chr12 28539240 28539453 -115247002 - MIR SINE MIR -7 255 9 642 283 45 18 chr12 28540181 28540463 -115245992 + L2 LINE L2 2720 3011 -302 1097 160 15 39 chr12 28540498 28540704 -115245751 + AluJo SINE Alu 84 284 -28 504 225 190 20 chr12 28540736 28540936 -115245519 + L2 LINE L2 3079 3312 -1 357 283 126 40 chr12 28541336 28541534 -115244921 + MIR SINE MIR 20 234 -28 533 204 26 86 chr12 28541651 28541803 -115244652 + MLT1E3 LTR MaLR 62 204 -420 1381 148 0 62 chr12 28541814 28542070 -115244385 + AluY SINE Alu 1 240 -71 398 244 67 28 chr12 28542258 28542438 -115244017 - L1ME4a LINE L1 -11 6110 5924 295 292 0 0 chr12 28542827 28542899 -115243556 + (CA)n Simple_repeat Simple_repeat 1 72 0 2081 92 7 14 chr12 28543167 28543460 -115242995 + AluY SINE Alu 1 291 -20 2032 78 7 11 chr12 28543949 28544218 -115242237 - AluY SINE Alu 0 311 44 302 264 23 62 chr12 28544290 28544419 -115242036 + L1ME4a LINE L1 5984 6107 -14 388 320 20 20 chr12 28544430 28544577 -115241878 + MIR SINE MIR 8 154 -108 2158 108 0 16 chr12 28545031 28545337 -115241118 + AluSg SINE Alu 1 301 -9 330 224 95 34 chr12 28545541 28545688 -115240767 + Charlie7 DNA MER1_type 2457 2612 0 2447 76 0 3 chr12 28546913 28547215 -115239240 - AluSg SINE Alu -9 301 1 654 248 139 18 chr12 28548212 28548486 -115237969 - MER102b DNA MER1_type 0 341 35 681 245 92 15 chr12 28549698 28549894 -115236561 - MIR SINE MIR -42 220 10 1143 244 59 60 chr12 28550182 28550728 -115235727 + L1MC5 LINE L1 7373 7917 -44 263 246 56 0 chr12 28551428 28551512 -115234943 + MIR SINE MIR 100 186 -22 1670 168 56 7 chr12 28551938 28552224 -115234231 - AluJo SINE Alu -12 300 1 237 132 0 0 chr12 28552994 28553032 -115233423 + (TG)n Simple_repeat Simple_repeat 1 38 0 2274 234 66 20 chr12 28554982 28555575 -115230880 + MER82 DNA MER2_type 1 620 -33 202 216 78 0 chr12 28556146 28556197 -115230258 + L2 LINE L2 3218 3272 0 194 314 0 47 chr12 28556537 28556623 -115229832 - L2 LINE L2 -5 3308 3227 257 366 81 14 chr12 28558776 28558997 -115227458 - L2 LINE L2 -337 2977 2742 1587 179 19 35 chr12 28559030 28559343 -115227112 + AluJo SINE Alu 4 311 -1 670 270 73 65 chr12 28560029 28560277 -115226178 + MIR SINE MIR 2 251 -11 1062 181 15 20 chr12 28560416 28560615 -115225840 - MER58A DNA MER1_type 0 224 27 23 0 0 0 chr12 28562539 28562562 -115223893 + AT_rich Low_complexity Low_complexity 1 23 0 245 200 0 0 chr12 28563121 28563166 -115223289 - L2 LINE L2 0 3313 3269 262 202 12 36 chr12 28563253 28563337 -115223118 + GA-rich Low_complexity Low_complexity 4 85 0 220 222 0 0 chr12 28564034 28564079 -115222376 - MIR SINE MIR 0 262 218 206 355 138 0 chr12 28564120 28564272 -115222183 - MIR SINE MIR -19 243 71 248 373 42 7 chr12 28564476 28564618 -115221837 + MIR3 SINE MIR 35 181 -27 678 256 37 0 chr12 28564775 28564939 -115221516 - MIR SINE MIR -77 185 16 1823 171 7 0 chr12 28565094 28565387 -115221068 + AluSx SINE Alu 1 295 -17 2568 43 0 7 chr12 28566017 28566321 -115220134 + AluY SINE Alu 1 302 -9 398 208 133 17 chr12 28566397 28566517 -115219938 - L1MC4 LINE L1 -91 7951 7818 931 261 104 63 chr12 28566574 28567065 -115219390 - L1MC4 LINE L1 -364 7678 7168 590 161 0 0 chr12 28568034 28568121 -115218334 - AluJ/FLAM SINE Alu -224 88 2 234 339 101 77 chr12 28568827 28568849 -115217606 - L2 LINE L2 -20 3252 3232 2132 128 0 0 chr12 28568849 28569153 -115217302 - AluSx SINE Alu -8 304 1 234 339 101 77 chr12 28569153 28569416 -115217039 - L2 LINE L2 -40 3232 2960 210 327 18 18 chr12 28570032 28570142 -115216313 - L2 LINE L2 -2959 355 246 386 246 65 29 chr12 28570321 28570459 -115215996 - MIR SINE MIR -50 212 70 2012 116 41 3 chr12 28571535 28571828 -115214627 + AluSq SINE Alu 1 304 -9 180 111 0 0 chr12 28572758 28572785 -115213670 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 2385 110 0 0 chr12 28572845 28573155 -115213300 - AluSx SINE Alu -2 310 1 398 244 67 28 chr12 28573341 28573521 -115212934 - L1ME4a LINE L1 -11 6110 5924 240 300 135 20 chr12 28573630 28573830 -115212625 - L1ME4a LINE L1 -362 5759 5537 204 278 0 0 chr12 28573910 28573982 -115212473 + (CA)n Simple_repeat Simple_repeat 1 72 0 2242 75 4 0 chr12 28574250 28574528 -115211927 + AluSp SINE Alu 1 279 -34 297 0 0 0 chr12 28574530 28574563 -115211892 + (CAA)n Simple_repeat Simple_repeat 1 33 0 324 0 0 0 chr12 28574564 28574600 -115211855 + (TA)n Simple_repeat Simple_repeat 2 37 0 333 0 0 0 chr12 28574749 28574786 -115211669 + (CA)n Simple_repeat Simple_repeat 2 38 0 191 35 0 35 chr12 28575179 28575208 -115211247 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 974 174 26 0 chr12 28575211 28575366 -115211089 - FRAM SINE Alu -24 152 1 707 274 24 59 chr12 28575368 28575623 -115210832 - MIR SINE MIR -8 254 9 2191 63 44 0 chr12 28575830 28576131 -115210324 - AluSg SINE Alu 0 313 1 2040 119 3 3 chr12 28576462 28576782 -115209673 - AluSq SINE Alu 0 320 1 2746 96 14 16 chr12 28576833 28577197 -115209258 - THE1B LTR MaLR 0 364 2 351 0 0 0 chr12 28577216 28577255 -115209200 + (TG)n Simple_repeat Simple_repeat 2 40 0 1175 175 45 135 chr12 28577783 28578184 -115208271 + MLT2B1 LTR ERVL 1 365 -49 216 135 0 0 chr12 28578189 28578226 -115208229 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 261 198 5 0 chr12 28578247 28578308 -115208147 + MLT2B1 LTR ERVL 391 520 0 1831 229 61 2 chr12 28578363 28578822 -115207633 + L1MC4a LINE L1 7323 7808 0 2248 95 10 3 chr12 28578833 28579129 -115207326 + AluSq SINE Alu 1 298 -15 319 106 0 0 chr12 28579452 28579499 -115206956 + L1MB3 LINE L1 6099 6145 -38 1489 176 48 14 chr12 28579519 28579809 -115206646 - L1MA6 LINE L1 -2 6298 5999 848 201 85 0 chr12 28580556 28580745 -115205710 - MER3 DNA MER1_type -4 205 1 1312 143 76 4 chr12 28580951 28581189 -115205266 - L1MA9 LINE L1 -5 6307 6053 194 287 185 9 chr12 28581897 28582005 -115204450 + MIR SINE MIR 67 193 -69 214 125 25 25 chr12 28582208 28582248 -115204207 + L2 LINE L2 3138 3177 -95 24 32 0 0 chr12 28583001 28583032 -115203423 + AT_rich Low_complexity Low_complexity 1 31 0 2448 110 22 30 chr12 28583426 28583791 -115202664 - THE1B LTR MaLR 0 364 3 361 262 16 25 chr12 28583990 28584112 -115202343 + L1ME1 LINE L1 5935 6055 -111 502 186 242 63 chr12 28584112 28584364 -115202091 - MER33 DNA MER1_type 0 324 28 398 202 39 39 chr12 28584393 28584497 -115201958 + L1ME1 LINE L1 6061 6164 -2 213 325 278 0 chr12 28585223 28585374 -115201081 + L3 LINE CR1 691 883 -694 324 331 63 16 chr12 28585640 28585767 -115200688 - MER5A DNA MER1_type -50 139 7 1169 154 50 11 chr12 28586157 28586339 -115200116 - MER5A DNA MER1_type 0 189 1 197 0 71 0 chr12 28587556 28587584 -115198871 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 849 333 105 28 chr12 28587928 28588472 -115197983 + L2 LINE L2 2323 2908 -406 321 329 205 0 chr12 28588642 28588803 -115197652 - MER91A DNA MER1_type -1 195 2 22 0 0 0 chr12 28588919 28588941 -115197514 + AT_rich Low_complexity Low_complexity 1 22 0 1215 180 40 68 chr12 28589933 28590255 -115196200 - MLT1B LTR MaLR -77 313 1 297 0 0 0 chr12 28590463 28590496 -115195959 + (TC)n Simple_repeat Simple_repeat 1 33 0 1927 128 3 50 chr12 28591006 28591326 -115195129 - AluJb SINE Alu -7 305 1 468 0 0 0 chr12 28591604 28591656 -115194799 + (CAT)n Simple_repeat Simple_repeat 1 52 0 2309 102 3 0 chr12 28592102 28592405 -115194050 + AluSx SINE Alu 4 307 -5 1837 173 0 16 chr12 28592773 28593079 -115193376 + AluJb SINE Alu 1 301 -11 215 265 61 0 chr12 28594314 28594363 -115192092 - MIR3 SINE MIR -46 162 111 262 246 0 15 chr12 28594630 28594695 -115191760 + MIR SINE MIR 91 154 -108 216 244 0 0 chr12 28594755 28594822 -115191633 + polypyrimidine Low_complexity Low_complexity 1 67 0 219 357 18 40 chr12 28595461 28595688 -115190767 - L2 LINE L2 -1893 1421 1200 227 318 0 0 chr12 28596100 28596163 -115190292 + L2 LINE L2 3246 3308 -5 1322 177 3 5 chr12 28596166 28596460 -115189995 + MER2 DNA MER2_type 1 344 -1 3133 109 56 56 chr12 28596903 28597509 -115188946 + MER4B LTR ERV1 1 774 -5 1974 161 45 3 chr12 28597810 28598140 -115188315 + MER2 DNA MER2_type 1 344 0 277 241 241 9 chr12 28598281 28598389 -115188066 + L2 LINE L2 2405 2537 -777 533 205 41 8 chr12 28598393 28598515 -115187940 + L1ME2 LINE L1 6031 6156 -8 274 171 13 13 chr12 28598586 28598662 -115187793 + (TA)n Simple_repeat Simple_repeat 1 76 0 914 264 75 53 chr12 28598717 28599223 -115187232 + L2 LINE L2 2557 3068 -245 794 220 89 14 chr12 28599268 28599482 -115186973 + MIR SINE MIR 9 238 -24 542 216 16 135 chr12 28599500 28599745 -115186710 + L2 LINE L2 3098 3313 0 1190 182 98 0 chr12 28599798 28600001 -115186454 - MER58A DNA MER1_type -1 223 1 239 194 148 83 chr12 28600955 28601063 -115185392 - MER5C DNA MER1_type 0 324 210 389 259 93 9 chr12 28601090 28601198 -115185257 - MER5C DNA MER1_type -201 123 7 384 181 112 52 chr12 28601331 28601447 -115185008 + L2 LINE L2 3188 3310 -3 1730 174 0 29 chr12 28602095 28602411 -115184044 + AluJo SINE Alu 1 307 -5 1602 144 91 4 chr12 28603668 28603931 -115182524 + AluJb SINE Alu 3 288 -24 713 215 141 16 chr12 28603945 28604037 -115182418 - L1MC5 LINE L1 -73 7888 7809 186 43 0 0 chr12 28604037 28604060 -115182395 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 713 215 141 16 chr12 28604060 28604223 -115182232 - L1MC5 LINE L1 -152 7809 7601 2305 96 3 22 chr12 28604248 28604560 -115181895 - AluSx SINE Alu -6 306 1 564 161 0 21 chr12 28604579 28604672 -115181783 + FLAM_A SINE Alu 34 124 -18 577 212 7 73 chr12 28605139 28605247 -115181208 - MER5A DNA MER1_type -15 174 77 2230 112 3 0 chr12 28605247 28605542 -115180913 - AluSx SINE Alu -15 297 2 577 212 7 73 chr12 28605542 28605584 -115180871 - MER5A DNA MER1_type -112 77 34 1489 99 22 0 chr12 28605644 28605866 -115180589 - L1MA3 LINE L1 -3 6302 6076 1862 131 32 32 chr12 28606844 28607156 -115179299 - AluJo SINE Alu 0 312 1 513 298 169 11 chr12 28607456 28607735 -115178720 - LTR16C LTR ERVL -44 447 125 822 225 175 21 chr12 28607991 28608276 -115178179 - L1ME2 LINE L1 -52 6112 5784 347 245 66 13 chr12 28608601 28608752 -115177703 - L1MEc LINE L1 -3382 2833 2675 331 204 86 0 chr12 28608788 28608881 -115177574 + L1MEc LINE L1 2148 2248 -4148 745 242 110 11 chr12 28608921 28609284 -115177171 - L1MEc LINE L1 -3608 2607 2209 1223 124 77 0 chr12 28609313 28609522 -115176933 - L1PB3 LINE L1 -6 6148 5924 342 236 94 9 chr12 28609526 28609632 -115176823 - L1MEc LINE L1 -4134 2262 2148 371 211 0 22 chr12 28609644 28609734 -115176721 + FLAM_A SINE Alu 44 131 -2 229 285 73 33 chr12 28610035 28610186 -115176269 + L2 LINE L2 3048 3204 -109 213 259 96 7 chr12 28610195 28610331 -115176124 + MER5C DNA MER1_type 77 321 -3 337 289 144 30 chr12 28611294 28611495 -115174960 + MIR SINE MIR 35 258 -4 189 74 0 0 chr12 28611528 28611555 -115174900 + (TG)n Simple_repeat Simple_repeat 1 27 0 259 194 194 0 chr12 28612373 28612435 -115174020 - MER5A DNA MER1_type -114 75 2 2444 84 0 0 chr12 28612513 28612812 -115173643 - AluSg1 SINE Alu -10 299 1 823 173 45 67 chr12 28612824 28613003 -115173452 - FAM SINE Alu 0 175 1 207 330 65 45 chr12 28613024 28613224 -115173231 + L2 LINE L2 2252 2455 -859 764 81 130 0 chr12 28614303 28614426 -115172029 - MER85 DNA T2_type 0 139 1 1340 247 37 60 chr12 28615350 28615960 -115170495 + L2 LINE L2 2704 3311 -2 192 152 0 0 chr12 28616624 28616657 -115169798 + CT-rich Low_complexity Low_complexity 3 35 0 1360 153 16 4 chr12 28616666 28616920 -115169535 + L1MB3 LINE L1 5925 6181 -2 393 297 50 33 chr12 28617092 28617274 -115169181 + MIR SINE MIR 42 226 -36 1878 86 4 11 chr12 28620345 28620623 -115165832 + LTR17 LTR ERV1 51 326 -454 333 0 0 0 chr12 28620624 28620661 -115165794 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 194 184 0 26 chr12 28620758 28620796 -115165659 + L3 LINE CR1 1540 1576 -1 275 77 0 0 chr12 28621720 28621759 -115164696 + tRNA-Ile-ATT tRNA tRNA 1 39 -38 230 324 184 68 chr12 28621965 28622301 -115164154 - L2 LINE L2 0 3272 2898 1524 190 23 36 chr12 28622753 28623058 -115163397 - AluJo SINE Alu -11 301 1 892 167 0 0 chr12 28625083 28625215 -115161240 - FLAM_A SINE Alu -5 137 6 26 30 0 0 chr12 28625327 28625360 -115161095 + AT_rich Low_complexity Low_complexity 1 33 0 2209 102 7 0 chr12 28625677 28625972 -115160483 - AluSx SINE Alu -9 303 7 6476 97 22 2 chr12 28626810 28627812 -115158643 + L1MA2 LINE L1 5271 6297 -7 563 255 71 47 chr12 28627864 28628076 -115158379 + MIR SINE MIR 22 238 -24 2053 123 0 3 chr12 28628221 28628529 -115157926 - AluSx SINE Alu 0 307 1 200 130 22 0 chr12 28628832 28628878 -115157577 + CT-rich Low_complexity Low_complexity 2 48 0 220 186 34 17 chr12 28629442 28629501 -115156954 + MIR SINE MIR 57 116 -146 786 194 0 8 chr12 28629951 28630085 -115156370 - FLAM_C SINE Alu 0 133 1 2187 118 0 3 chr12 28631981 28632286 -115154169 + AluSx SINE Alu 1 304 -8 285 366 0 0 chr12 28636217 28636310 -115150145 + MIR3 SINE MIR 111 203 -5 1830 144 0 85 chr12 28636503 28636843 -115149612 + AluJo SINE Alu 1 311 -1 299 317 10 0 chr12 28636882 28636983 -115149472 + MER5C DNA MER1_type 4 105 -219 221 263 18 0 chr12 28637214 28637271 -115149184 - MIR3 SINE MIR -51 157 100 1282 128 0 62 chr12 28638054 28638265 -115148190 + AluJo SINE Alu 51 248 -64 478 149 23 23 chr12 28638265 28638352 -115148103 + AluJo/FRAM SINE Alu 210 296 -16 799 224 13 0 chr12 28638477 28638629 -115147826 + FRAM SINE Alu 2 155 -21 932 122 0 0 chr12 28638738 28638869 -115147586 - FLAM_C SINE Alu -2 131 1 187 343 90 22 chr12 28640751 28640885 -115145570 - L2 LINE L2 -180 3092 2950 415 327 155 29 chr12 28641063 28641476 -115144979 - L2 LINE L2 -585 2729 2265 489 220 54 119 chr12 28641634 28641970 -115144485 - MLT1H LTR MaLR -113 436 123 2066 142 3 0 chr12 28642236 28642538 -115143917 + AluJb SINE Alu 1 303 -9 224 226 0 0 chr12 28642699 28642752 -115143703 + T-rich Low_complexity Low_complexity 3 55 0 483 302 148 41 chr12 28643340 28643583 -115142872 - L2 LINE L2 -291 2981 2765 2077 120 0 0 chr12 28643583 28643874 -115142581 + AluSx SINE Alu 1 291 -21 483 302 148 41 chr12 28643874 28644216 -115142239 - L2 LINE L2 -507 2765 2317 305 214 136 39 chr12 28644764 28644918 -115141537 - L1ME4a LINE L1 -33 6088 5920 1454 240 172 6 chr12 28646296 28646779 -115139676 - MLT1G1 LTR MaLR -29 566 4 285 244 80 128 chr12 28646794 28647130 -115139325 - MLT1G1-int LTR MaLR -24 1347 1028 305 232 61 0 chr12 28647725 28647807 -115138648 - MLT1G1-int LTR MaLR -1194 541 455 1793 166 14 10 chr12 28649176 28649494 -115136961 + AluJo SINE Alu 2 320 0 231 254 75 75 chr12 28649536 28649670 -115136785 - MIR SINE MIR -82 180 47 743 197 8 0 chr12 28649700 28649832 -115136623 + FLAM_A SINE Alu 1 133 0 2123 141 3 0 chr12 28650467 28650766 -115135689 + AluSx SINE Alu 1 300 -12 1734 163 40 0 chr12 28652989 28653289 -115133166 + L1MB5 LINE L1 5853 6164 -10 1652 159 9 92 chr12 28653489 28653816 -115132639 - AluJo SINE Alu -9 303 4 1171 167 5 9 chr12 28654254 28654464 -115131991 + L1 LINE L1 4890 5098 -1048 2470 86 0 0 chr12 28657255 28657559 -115128896 + AluSg1 SINE Alu 1 304 -5 786 257 119 18 chr12 28659052 28659278 -115127177 + MIR SINE MIR 6 254 -8 387 127 16 0 chr12 28661673 28661736 -115124719 + L1MB7 LINE L1 6106 6169 -15 2220 115 3 7 chr12 28661737 28662042 -115124413 - AluSx SINE Alu -8 304 1 2507 77 0 0 chr12 28662453 28662764 -115123691 - AluY SINE Alu 0 311 1 2162 130 0 0 chr12 28662779 28663086 -115123369 - AluSx SINE Alu -5 307 1 222 313 40 20 chr12 28663326 28663425 -115123030 - MIR SINE MIR -16 246 146 1349 145 52 12 chr12 28663453 28663701 -115122754 - L1MD3 LINE L1 0 7995 7738 283 227 53 0 chr12 28663890 28663965 -115122490 - L1MC4 LINE L1 -1349 6693 6615 395 241 50 57 chr12 28664001 28664142 -115122313 - MIR SINE MIR -105 157 18 1320 137 64 9 chr12 28664338 28664571 -115121884 + L1MD3 LINE L1 7750 7995 0 23 0 0 0 chr12 28664894 28664917 -115121538 + AT_rich Low_complexity Low_complexity 1 23 0 805 178 8 0 chr12 28665433 28665562 -115120893 + AluJo SINE Alu 2 131 -171 1707 174 0 13 chr12 28666478 28666776 -115119679 + AluJb SINE Alu 1 294 -18 223 217 14 72 chr12 28667439 28667508 -115118947 + MIR SINE MIR 19 83 -125 298 232 43 85 chr12 28668028 28668192 -115118263 - TAR1 Satellite telomeric -1832 279 123 3351 137 40 16 chr12 28668218 28668788 -115117667 - LTR60 LTR ERV1 -2 584 1 1129 179 146 19 chr12 28668799 28669011 -115117444 - MER8 DNA MER2_type 0 239 1 586 97 0 0 chr12 28669051 28669123 -115117332 + tRNA-Lys-AAA tRNA tRNA 2 73 -3 850 179 0 65 chr12 28669130 28669298 -115117157 + AluJo SINE Alu 134 290 -22 888 149 0 0 chr12 28669972 28670093 -115116362 + FLAM_A SINE Alu 1 121 -12 626 244 73 0 chr12 28670723 28670887 -115115568 - MIR SINE MIR 0 262 87 23 54 0 0 chr12 28672040 28672077 -115114378 + AT_rich Low_complexity Low_complexity 1 37 0 1960 124 21 3 chr12 28672370 28672653 -115113802 - AluSg SINE Alu -22 288 1 1715 153 3 75 chr12 28672658 28672991 -115113464 - AluJo SINE Alu -3 309 1 2379 77 0 13 chr12 28673798 28674097 -115112358 - AluY SINE Alu -16 295 1 2048 129 10 10 chr12 28674576 28674879 -115111576 + AluJb SINE Alu 1 303 -9 1088 188 0 0 chr12 28676411 28676571 -115109884 + FRAM SINE Alu 1 160 -6 1859 142 25 0 chr12 28677153 28677427 -115109028 + AluJb SINE Alu 23 303 -9 306 247 155 0 chr12 28677803 28677900 -115108555 + MER112 DNA MER1_type 129 240 -20 294 232 265 7 chr12 28678222 28678373 -115108082 + LTR33 LTR ERVL 324 513 -8 202 238 89 79 chr12 28678373 28678454 -115108001 + MIR SINE MIR 116 200 -62 2305 96 23 0 chr12 28678454 28678757 -115107698 + AluSg SINE Alu 1 310 0 202 238 89 79 chr12 28678757 28678776 -115107679 + MIR SINE MIR 200 217 -45 1046 277 70 52 chr12 28679428 28679595 -115106860 - L2 LINE L2 -4 3309 3146 1847 126 7 11 chr12 28679595 28679866 -115106589 + AluSx SINE Alu 16 285 -27 1046 277 70 52 chr12 28679866 28680298 -115106157 - L2 LINE L2 -167 3146 2690 2274 114 0 0 chr12 28680298 28680595 -115105860 + AluSx SINE Alu 1 297 -15 1046 277 70 52 chr12 28680595 28680810 -115105645 - L2 LINE L2 -623 2690 2480 218 176 20 0 chr12 28681526 28681577 -115104878 + GA-rich Low_complexity Low_complexity 2 53 0 2413 83 0 3 chr12 28681719 28682031 -115104424 + AluY SINE Alu 1 311 0 215 278 231 0 chr12 28682580 28682688 -115103767 + MIR SINE MIR 17 149 -113 3965 137 29 2 chr12 28682697 28683283 -115103172 - MER7C DNA MER2_type 0 602 1 26 0 0 0 chr12 28683621 28683647 -115102808 + AT_rich Low_complexity Low_complexity 1 26 0 432 269 39 77 chr12 28683774 28683956 -115102499 + MER5B DNA MER1_type 1 175 -3 3125 195 128 29 chr12 28683970 28684839 -115101616 - LTR28 LTR ERV1 0 1020 5 253 250 0 0 chr12 28684841 28684901 -115101554 - L1ME LINE L1 -325 5796 5737 2322 114 0 0 chr12 28684999 28685306 -115101149 + AluSx SINE Alu 1 307 -5 928 126 28 0 chr12 28685328 28685471 -115100984 + L1MA3 LINE L1 6159 6305 0 733 162 0 8 chr12 28685559 28685676 -115100779 - MER45A DNA AcHobo 0 178 63 1944 155 3 0 chr12 28685752 28686048 -115100407 - AluJb SINE Alu -14 298 2 4459 132 9 42 chr12 28686415 28687150 -115099305 + MER50 LTR ERV1 1 711 -23 285 305 126 18 chr12 28687284 28687451 -115099004 - MIR SINE MIR -62 200 16 1345 159 47 27 chr12 28687472 28687730 -115098725 + MLT1C LTR MaLR 205 467 0 745 180 0 8 chr12 28688012 28688134 -115098321 + AluJo SINE Alu 14 134 -178 1642 166 14 41 chr12 28688144 28688439 -115098016 + AluJb SINE Alu 1 287 -25 43 0 0 0 chr12 28688439 28688482 -115097973 + AT_rich Low_complexity Low_complexity 1 43 0 2090 84 40 0 chr12 28688496 28688792 -115097663 - AluSp SINE Alu 0 307 1 289 313 0 0 chr12 28689010 28689077 -115097378 - MIR SINE MIR -160 102 36 356 348 120 0 chr12 28690247 28690497 -115095958 + L2 LINE L2 2494 2773 -541 1437 271 79 29 chr12 28690582 28691391 -115095064 - L2 LINE L2 -22 3291 2384 1799 160 7 7 chr12 28691412 28691706 -115094749 + AluJb SINE Alu 1 294 -18 309 328 16 25 chr12 28691824 28691946 -115094509 + L2 LINE L2 2935 3055 -217 2563 140 96 77 chr12 28691948 28692482 -115093973 - MLT2B3 LTR ERVL -8 546 3 1721 152 47 7 chr12 28692483 28692780 -115093675 + AluJb SINE Alu 1 309 -3 1813 151 14 7 chr12 28692983 28693262 -115093193 + AluSx SINE Alu 1 281 -31 1906 133 36 3 chr12 28693802 28694104 -115092351 - AluSq SINE Alu -1 312 1 328 91 0 0 chr12 28694104 28694148 -115092307 - Alu SINE Alu -259 44 1 187 247 123 0 chr12 28695161 28695242 -115091213 + L2 LINE L2 2331 2421 -893 26 30 0 0 chr12 28695247 28695280 -115091175 + AT_rich Low_complexity Low_complexity 1 33 0 2314 94 0 10 chr12 28695383 28695682 -115090773 + AluSx SINE Alu 1 296 -16 816 161 8 0 chr12 28695735 28695859 -115090596 - FLAM_C SINE Alu -8 125 1 229 191 0 0 chr12 28696536 28696578 -115089877 + MIR SINE MIR 183 224 -38 1939 124 50 7 chr12 28696820 28697102 -115089353 + AluSx SINE Alu 1 294 -18 2307 117 0 0 chr12 28697482 28697791 -115088664 + AluSx SINE Alu 1 309 -3 258 125 21 21 chr12 28697917 28697965 -115088490 - U5 snRNA snRNA -68 48 1 2809 13 0 0 chr12 28698066 28698369 -115088086 + AluYb8 SINE Alu 5 307 -11 2235 123 0 7 chr12 28698787 28699096 -115087359 + AluSq SINE Alu 1 307 -6 25 0 0 0 chr12 28699162 28699187 -115087268 + AT_rich Low_complexity Low_complexity 1 25 0 238 280 75 32 chr12 28699187 28699280 -115087175 - HAL1 LINE L1 -15 2492 2396 229 194 32 43 chr12 28699283 28699376 -115087079 + (TATATG)n Simple_repeat Simple_repeat 3 94 0 1787 159 11 3 chr12 28700053 28700362 -115086093 + AluJb SINE Alu 1 311 0 258 155 0 41 chr12 28700479 28700717 -115085738 + AluJo SINE Alu 5 302 0 244 357 83 3 chr12 28700930 28701064 -115085391 - MIR SINE MIR -69 139 13 918 139 0 0 chr12 28702939 28703068 -115083387 + FLAM_C SINE Alu 6 134 -9 2385 82 0 0 chr12 28703140 28703434 -115083021 + AluSx SINE Alu 3 296 -16 1286 202 55 7 chr12 28703616 28703888 -115082567 - AluJo SINE Alu -23 289 5 573 307 115 8 chr12 28704033 28704408 -115082047 - L1ME LINE L1 -321 5800 5386 1943 148 0 13 chr12 28704476 28704779 -115081676 - AluJb SINE Alu -5 307 9 3120 157 45 29 chr12 28704796 28705638 -115080817 - L1MB7 LINE L1 0 6184 5356 2402 63 0 3 chr12 28705638 28705925 -115080530 - AluY SINE Alu -12 299 14 3120 157 45 29 chr12 28705925 28705970 -115080485 - L1MB7 LINE L1 -828 5356 5313 1670 183 52 0 chr12 28705970 28706298 -115080157 + MER7A DNA MER2_type 2 344 -2 3120 157 45 29 chr12 28706298 28706458 -115079997 - L1MB7 LINE L1 -871 5313 5157 1150 168 127 59 chr12 28706458 28706780 -115079675 + MER2 DNA MER2_type 1 344 0 3120 157 45 29 chr12 28706780 28706900 -115079555 - L1MB7 LINE L1 -1027 5157 4857 569 271 72 51 chr12 28706958 28707755 -115078700 - L1MC5 LINE L1 -35 7926 7200 866 231 28 36 chr12 28707764 28708015 -115078440 - L1MC4 LINE L1 -1029 7013 6765 310 306 97 21 chr12 28708301 28708445 -115078010 - L1M4 LINE L1 -2264 3882 3728 2316 152 193 131 chr12 28708653 28709124 -115077331 - L1MC3 LINE L1 0 7785 7345 1729 139 3 71 chr12 28709124 28709448 -115077007 - AluJb SINE Alu -10 302 1 2316 152 193 131 chr12 28709448 28709543 -115076912 - L1MC3 LINE L1 -440 7345 7257 381 208 47 38 chr12 28709543 28709649 -115076806 - MLT1F1 LTR MaLR -442 125 19 2316 152 193 131 chr12 28709649 28709944 -115076511 - L1MC3 LINE L1 -528 7257 6758 2193 113 0 0 chr12 28710253 28710546 -115075909 - AluSx SINE Alu -19 293 1 273 267 244 8 chr12 28711399 28711530 -115074925 - MIR SINE MIR -50 212 51 486 0 0 0 chr12 28711665 28711719 -115074736 + (TA)n Simple_repeat Simple_repeat 2 55 0 223 339 211 0 chr12 28712593 28712702 -115073753 - L2 LINE L2 0 3272 3141 2332 93 7 0 chr12 28712917 28713218 -115073237 - AluSp SINE Alu -10 303 1 310 281 86 0 chr12 28713378 28713506 -115072949 - MER103 DNA DNA -9 157 19 1600 165 39 14 chr12 28715544 28715829 -115070626 - AluJo SINE Alu -5 307 16 2069 130 49 11 chr12 28716764 28717111 -115069344 - MER46B DNA MER2_type -1 235 1 22 0 0 0 chr12 28717111 28717133 -115069322 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr12 28717266 28717292 -115069163 + AT_rich Low_complexity Low_complexity 1 26 0 324 375 117 38 chr12 28717483 28717591 -115068864 + L3 LINE CR1 1263 1361 -216 2033 106 60 3 chr12 28717591 28717875 -115068580 - AluSx SINE Alu -12 300 1 324 375 117 38 chr12 28717875 28718057 -115068398 + L3 LINE CR1 1361 1576 -1 209 200 18 55 chr12 28718248 28718303 -115068152 - L3 LINE CR1 -251 1326 1274 1931 163 3 7 chr12 28718945 28719246 -115067209 - AluJb SINE Alu -12 300 1 1975 107 0 11 chr12 28719594 28719875 -115066580 + AluSx SINE Alu 33 310 -2 304 268 62 31 chr12 28719951 28720048 -115066407 + MIR SINE MIR 31 130 -132 192 217 43 0 chr12 28720086 28720132 -115066323 + L2 LINE L2 3263 3310 -3 601 167 10 0 chr12 28720666 28720768 -115065687 + FLAM_A SINE Alu 8 110 -32 1733 179 0 17 chr12 28721537 28721838 -115064617 - AluJo SINE Alu -16 296 1 2437 82 0 0 chr12 28721923 28722228 -115064227 + AluSq SINE Alu 1 305 -8 818 213 40 40 chr12 28722372 28722654 -115063801 - MLT1A2 LTR MaLR 0 374 1 1000 105 0 0 chr12 28722989 28723122 -115063333 + AluSq/x SINE Alu 1 133 -179 863 123 43 0 chr12 28723650 28723788 -115062667 - AluJb SINE Alu -29 283 140 355 317 79 31 chr12 28723913 28724065 -115062390 - MIR3 SINE MIR -43 165 6 230 240 93 80 chr12 28724207 28724847 -115061608 - MER5A DNA MER1_type -5 184 33 464 198 98 81 chr12 28724224 28724247 -115062208 + MER5B DNA MER1_type 35 56 -122 4035 35 10 0 chr12 28724247 28724738 -115061717 - L1PA4 LINE L1 0 6155 5660 464 198 98 81 chr12 28724738 28724862 -115061593 + MER5B DNA MER1_type 56 172 -6 1175 146 103 5 chr12 28724945 28725158 -115061297 + MER46A DNA MER2_type 2 235 -1 554 351 123 24 chr12 28725405 28725778 -115060677 + L2 LINE L2 2420 2829 -485 350 332 187 14 chr12 28725847 28726136 -115060319 + L2 LINE L2 2934 3272 0 903 222 0 6 chr12 28726576 28726756 -115059699 + MIR SINE MIR 64 242 -20 279 351 75 21 chr12 28726770 28726958 -115059497 + L2 LINE L2 2858 3055 -258 258 246 77 0 chr12 28726932 28726997 -115059458 + L2 LINE L2 3244 3313 0 * 297 0 0 0 chr12 28727116 28727149 -115059306 + (TG)n Simple_repeat Simple_repeat 1 33 0 702 186 0 0 chr12 28727356 28727474 -115058981 - AluJb SINE Alu -20 292 175 671 200 9 0 chr12 28727551 28727666 -115058789 + FLAM_A SINE Alu 1 116 -17 280 171 99 63 chr12 28727759 28727870 -115058585 + L1ME4a LINE L1 5985 6099 -22 400 278 218 28 chr12 28728426 28728642 -115057813 - MIR SINE MIR -2 260 4 836 208 88 19 chr12 28728689 28728949 -115057506 + MER46C DNA MER2_type 18 295 -43 1925 160 0 7 chr12 28729198 28729498 -115056957 + AluJb SINE Alu 1 298 -14 2449 97 0 0 chr12 28729498 28729809 -115056646 + AluSx SINE Alu 1 311 -1 3252 128 68 27 chr12 28730013 28730600 -115055855 - LTR18B LTR ERVL 0 614 4 1255 143 8 73 chr12 28730634 28730893 -115055562 + AluJo SINE Alu 1 242 -70 603 100 55 55 chr12 28731551 28731661 -115054794 + HY1 scRNA scRNA 1 110 -2 26 0 0 0 chr12 28731661 28731687 -115054768 + AT_rich Low_complexity Low_complexity 1 26 0 2008 139 0 0 chr12 28732649 28732930 -115053525 + AluSx SINE Alu 1 281 -31 25 0 0 0 chr12 28733007 28733032 -115053423 + AT_rich Low_complexity Low_complexity 1 25 0 2111 133 3 0 chr12 28733162 28733464 -115052991 + AluJb SINE Alu 1 303 -9 210 191 0 0 chr12 28733755 28733802 -115052653 + GA-rich Low_complexity Low_complexity 2 48 0 1011 249 94 70 chr12 28735550 28735793 -115050662 + MER77 LTR ERV1 62 298 -307 2439 65 0 0 chr12 28735793 28736086 -115050369 + AluY SINE Alu 1 293 -18 1011 249 94 70 chr12 28736086 28736371 -115050084 + MER77 LTR ERV1 298 603 -2 768 154 0 0 chr12 28736543 28736660 -115049795 + FLAM_C SINE Alu 3 119 -24 198 143 0 0 chr12 28736667 28736702 -115049753 + (TA)n Simple_repeat Simple_repeat 2 36 0 324 0 0 0 chr12 28737028 28737064 -115049391 + (T)n Simple_repeat Simple_repeat 1 36 0 1779 167 37 0 chr12 28737069 28737368 -115049087 + AluJo SINE Alu 1 310 -2 1146 126 12 118 chr12 28737467 28737722 -115048733 - AluJo SINE Alu -3 309 82 23 0 0 0 chr12 28737731 28737754 -115048701 + AT_rich Low_complexity Low_complexity 1 23 0 2083 108 10 3 chr12 28738089 28738384 -115048071 + AluSq SINE Alu 1 297 -16 944 170 0 96 chr12 28738595 28738783 -115047672 - AluJb SINE Alu -14 298 129 1796 153 0 49 chr12 28738797 28738969 -115047486 - AluJb SINE Alu -19 293 141 2368 96 0 3 chr12 28738969 28739282 -115047173 - AluSx SINE Alu 0 312 1 1796 153 0 49 chr12 28739282 28739417 -115047038 - AluJb SINE Alu -171 141 1 609 89 11 0 chr12 28739609 28739699 -115046756 - L1PB4 LINE L1 -3 6153 6063 2134 110 13 3 chr12 28739768 28740069 -115046386 - AluSx SINE Alu -8 304 1 716 211 38 101 chr12 28740641 28740878 -115045577 + MIR SINE MIR 3 224 -38 1759 133 17 47 chr12 28741028 28741328 -115045127 - AluJo SINE Alu -21 291 1 1974 162 0 7 chr12 28742401 28742709 -115043746 - AluJb SINE Alu -5 307 2 186 43 0 0 chr12 28742955 28742978 -115043477 + (TC)n Simple_repeat Simple_repeat 2 24 0 213 317 150 43 chr12 28743000 28743514 -115042941 + L2 LINE L2 1880 2448 -866 1688 149 53 25 chr12 28743531 28743812 -115042643 - AluJo SINE Alu -21 291 3 2392 79 0 0 chr12 28744751 28745043 -115041412 - AluSc SINE Alu -17 292 1 1893 139 35 3 chr12 28745660 28745948 -115040507 - AluJb SINE Alu -15 297 1 2017 91 25 0 chr12 28746099 28746398 -115040057 + AluSp SINE Alu 1 306 0 2314 108 3 16 chr12 28746794 28747110 -115039345 + AluSx SINE Alu 1 312 0 1899 115 57 14 chr12 28747318 28747597 -115038858 - AluSx SINE Alu -11 301 11 2018 109 0 0 chr12 28748883 28749158 -115037297 - AluSx SINE Alu -37 275 1 927 119 0 22 chr12 28749234 28749368 -115037087 + FLAM_C SINE Alu 1 131 -2 23 0 0 0 chr12 28749372 28749395 -115037060 + AT_rich Low_complexity Low_complexity 1 23 0 881 215 6 0 chr12 28750555 28750727 -115035728 + AluSg/x SINE Alu 115 287 -23 185 0 40 0 chr12 28750733 28750758 -115035697 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 743 134 0 0 chr12 28751738 28751857 -115034598 + FLAM_C SINE Alu 1 119 -24 211 213 33 16 chr12 28752288 28752349 -115034106 - MER5A DNA MER1_type -85 104 43 2207 128 0 6 chr12 28752543 28752856 -115033599 + AluSx SINE Alu 1 311 -1 26 0 0 0 chr12 28752988 28753014 -115033441 + AT_rich Low_complexity Low_complexity 1 26 0 32 0 0 0 chr12 28753037 28753069 -115033386 + AT_rich Low_complexity Low_complexity 1 32 0 1189 123 91 16 chr12 28753247 28753419 -115033036 - LTR54 LTR ERV1 -1 509 351 2420 53 0 3 chr12 28753419 28753702 -115032753 + AluY SINE Alu 1 328 0 415 0 0 0 chr12 28753702 28753748 -115032707 + (TAAA)n Simple_repeat Simple_repeat 2 100 0 1189 123 91 16 chr12 28753748 28753972 -115032483 - LTR54 LTR ERV1 -159 351 21 581 181 0 11 chr12 28753977 28754211 -115032244 + AluJ SINE Alu 6 289 -23 782 156 8 8 chr12 28754245 28754373 -115032082 - AluJo SINE Alu -178 134 7 2411 86 7 0 chr12 28754485 28754786 -115031669 + AluSq SINE Alu 1 303 -10 366 164 336 0 chr12 28754872 28754982 -115031473 + MIR SINE MIR 111 257 -5 312 173 25 12 chr12 28754982 28755063 -115031392 - L1ME LINE L1 -363 5758 5677 1837 148 0 72 chr12 28755125 28755457 -115030998 + AluJb SINE Alu 1 308 -4 390 226 7 54 chr12 28756491 28756609 -115029846 + FLAM_A SINE Alu 47 130 -3 2309 88 3 0 chr12 28756622 28756918 -115029537 + AluSp SINE Alu 2 298 -15 394 187 103 0 chr12 28758257 28758364 -115028091 + HAL1 LINE L1 2043 2160 -347 637 236 37 65 chr12 28758389 28758456 -115027999 + HAL1 LINE L1 2265 2332 -175 2378 96 3 6 chr12 28758456 28758770 -115027685 + AluSq SINE Alu 1 313 0 637 236 37 65 chr12 28758770 28758948 -115027507 + HAL1 LINE L1 2332 2503 -4 1599 164 14 27 chr12 28758957 28759250 -115027205 + AluJo SINE Alu 8 296 -16 2048 157 3 0 chr12 28759617 28759922 -115026533 - AluJb SINE Alu -6 306 1 1158 102 94 129 chr12 28760634 28760890 -115025565 - Tigger1 DNA MER2_type 0 2418 2172 * 12270 118 7 12 chr12 28760888 28762685 -115023770 - Tigger1 DNA MER2_type -629 1789 1 24 0 0 0 chr12 28762702 28762726 -115023729 + AT_rich Low_complexity Low_complexity 1 24 0 2117 138 3 0 chr12 28762726 28763037 -115023418 - AluSx SINE Alu 0 312 1 2236 110 0 0 chr12 28763591 28763883 -115022572 + AluSq SINE Alu 3 294 -19 1299 108 46 0 chr12 28763892 28764087 -115022368 + L1PA14 LINE L1 5958 6161 0 21 0 0 0 chr12 28765113 28765134 -115021321 + AT_rich Low_complexity Low_complexity 1 21 0 396 260 65 32 chr12 28767271 28767425 -115019030 - MIR SINE MIR -11 251 93 281 237 227 31 chr12 28767524 28767621 -115018834 + MIR SINE MIR 30 145 -117 246 339 62 0 chr12 28767810 28767922 -115018533 + MIR SINE MIR 31 149 -113 326 283 43 0 chr12 28767959 28768051 -115018404 + MLT1F-int LTR MaLR 1 96 -1275 689 286 18 5 chr12 28768123 28768347 -115018108 + MLT1F-int LTR MaLR 285 511 -860 1378 109 0 0 chr12 28768358 28768533 -115017922 + AluSq SINE Alu 1 175 -138 1534 89 11 0 chr12 28768533 28768744 -115017711 + AluSg/x SINE Alu 90 302 0 1690 150 0 104 chr12 28769146 28769473 -115016982 + AluJb SINE Alu 1 293 -19 2316 103 0 0 chr12 28769473 28769764 -115016691 + AluSc SINE Alu 1 291 -18 383 336 35 77 chr12 28770016 28770382 -115016073 + MLT1F-int LTR MaLR 1021 1371 0 1602 252 169 11 chr12 28770382 28770850 -115015605 + MLT1F LTR MaLR 1 542 0 231 238 16 0 chr12 28772264 28772327 -115014128 - MIR SINE MIR -108 154 91 231 356 0 10 chr12 28772474 28772575 -115013880 - MIR SINE MIR -157 105 6 382 191 0 0 chr12 28772667 28772730 -115013725 + MER94 DNA DNA 2 64 -70 1816 213 0 3 chr12 28772803 28773131 -115013324 + Tigger5 DNA MER2_type 1 327 -1996 1698 136 0 19 chr12 28773101 28773366 -115013089 + Tigger5 DNA MER2_type 2064 2323 0 * 196 233 167 0 chr12 28774255 28774315 -115012140 - MIR SINE MIR -58 150 81 2035 80 8 0 chr12 28775742 28775991 -115010464 - AluSx SINE Alu -10 302 52 4015 117 28 0 chr12 28775991 28776555 -115009900 + LTR19B LTR ERV1 1 580 0 414 73 0 0 chr12 28776555 28776610 -115009845 - AluSx SINE Alu -255 56 2 340 269 28 9 chr12 28776839 28776947 -115009508 + MER5A DNA MER1_type 9 118 -71 2414 137 213 27 chr12 28777402 28777914 -115008541 + LTR18B LTR ERVL 2 608 -6 1721 157 3 45 chr12 28778523 28778809 -115007646 + AluJo SINE Alu 1 274 -38 599 125 10 0 chr12 28778813 28778917 -115007538 + (GGGGA)n Simple_repeat Simple_repeat 3 107 0 536 135 0 0 chr12 28779270 28779344 -115007111 + MER63 DNA MER1_type 677 750 -86 262 241 0 0 chr12 28779346 28779404 -115007051 + MER63 DNA MER1_type 977 1034 -26 208 275 275 0 chr12 28779738 28779754 -115006701 - L2 LINE L2 -9 3263 3253 2288 149 44 44 chr12 28779754 28780107 -115006348 + MSTA LTR MaLR 1 356 -72 1734 153 34 20 chr12 28780107 28780402 -115006053 + AluJb SINE Alu 1 299 -13 2288 149 44 44 chr12 28780402 28780476 -115005979 + MSTA LTR MaLR 355 428 0 208 275 275 0 chr12 28780476 28780550 -115005905 - L2 LINE L2 -19 3253 3148 436 255 39 0 chr12 28780612 28780714 -115005741 - L2 LINE L2 -1 3271 3166 332 279 79 63 chr12 28781332 28781748 -115004707 - MLT1L LTR MaLR -2 607 110 3342 146 14 13 chr12 28781773 28782329 -115004126 + L1MA5 LINE L1 5742 6298 -2 1532 238 153 11 chr12 28782358 28782737 -115003718 + MLT1E LTR MaLR 1 433 -160 2401 92 3 0 chr12 28782737 28783032 -115003423 + AluSx SINE Alu 1 296 -16 277 190 0 35 chr12 28783138 28783196 -115003259 + MLT1J LTR MaLR 6 61 -450 1824 207 173 106 chr12 28783199 28783812 -115002643 - MLT1E3 LTR MaLR 0 624 1 658 291 54 77 chr12 28783813 28784126 -115002329 + MLT1J LTR MaLR 62 367 -144 518 211 46 0 chr12 28784147 28784256 -115002199 + MER63A DNA MER1_type 1 114 0 977 128 0 0 chr12 28784256 28784437 -115002018 - FLAM_C SINE Alu 0 181 1 433 301 10 0 chr12 28784440 28784543 -115001912 + MER63A DNA MER1_type 107 210 0 449 226 24 32 chr12 28784543 28784667 -115001788 + MLT1J LTR MaLR 380 502 -9 2278 122 0 0 chr12 28785493 28785805 -115000650 - AluSq SINE Alu -1 312 1 447 284 71 0 chr12 28786052 28786221 -115000234 - MIR SINE MIR -50 212 32 661 189 75 66 chr12 28786357 28786417 -115000038 - ORSL DNA AcHobo -51 224 166 1869 154 3 22 chr12 28786417 28786729 -114999726 + AluJo SINE Alu 1 306 -6 661 189 75 66 chr12 28786729 28786880 -114999575 - ORSL DNA AcHobo -109 166 11 1654 150 64 4 chr12 28787335 28787615 -114998840 + AluSx SINE Alu 3 299 -13 1207 84 6 6 chr12 28788002 28788181 -114998274 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 304 77 0 0 chr12 28788402 28788441 -114998014 + 5S rRNA rRNA 1 39 -82 536 185 0 0 chr12 28788744 28788836 -114997619 + AluSg/x SINE Alu 204 295 -14 1057 205 118 72 chr12 28789763 28789834 -114996621 + MER110 LTR ERV1 146 212 -279 856 131 0 182 chr12 28789834 28790070 -114996385 + 7SK RNA RNA 1 193 0 1057 205 118 72 chr12 28790070 28790329 -114996126 + MER110 LTR ERV1 212 491 0 299 250 0 0 chr12 28790403 28790463 -114995992 + MLT1K LTR MaLR 182 241 -347 731 300 31 43 chr12 28790796 28790991 -114995464 - MIR SINE MIR 0 262 69 2359 84 0 47 chr12 28790991 28791312 -114995143 + AluSg SINE Alu 2 307 -3 731 300 31 43 chr12 28791312 28791373 -114995082 - MIR SINE MIR -193 69 9 1633 142 38 48 chr12 28791518 28791807 -114994648 + AluJo SINE Alu 3 288 -24 291 190 0 0 chr12 28791810 28791868 -114994587 + GA-rich Low_complexity Low_complexity 3 60 0 946 135 0 14 chr12 28792164 28792305 -114994150 - FLAM_C SINE Alu -4 139 1 455 234 55 7 chr12 28792610 28792755 -114993700 + MIR SINE MIR 94 245 -17 1537 150 11 30 chr12 28792839 28793105 -114993350 - AluJo SINE Alu -13 299 39 245 311 89 0 chr12 28794298 28794388 -114992067 + L2 LINE L2 3153 3250 -22 370 305 119 6 chr12 28794488 28794665 -114991790 + MER117 DNA MER1_type 1 197 0 727 92 0 0 chr12 28795490 28795588 -114990867 - AluSg/x SINE Alu -4 306 209 300 70 0 0 chr12 28795846 28795889 -114990566 + (CA)n Simple_repeat Simple_repeat 2 44 0 253 185 19 0 chr12 28796598 28796652 -114989803 + L2 LINE L2 3218 3272 0 24 32 0 0 chr12 28797835 28797866 -114988589 + AT_rich Low_complexity Low_complexity 1 31 0 1781 153 3 30 chr12 28799286 28799586 -114986869 + AluJb SINE Alu 1 292 -20 1329 227 58 68 chr12 28801478 28801568 -114984887 + MLT1C LTR MaLR 6 95 -372 553 135 6 190 chr12 28801568 28801731 -114984724 + FLAM_C SINE Alu 1 133 0 1329 227 58 68 chr12 28801731 28802107 -114984348 + MLT1C LTR MaLR 95 467 0 1786 166 10 16 chr12 28802652 28802966 -114983489 - AluJo SINE Alu 0 312 1 712 183 8 0 chr12 28802968 28803094 -114983361 - AluJo/FLAM SINE Alu -171 131 5 800 167 8 0 chr12 28803174 28803300 -114983155 + FLAM_C SINE Alu 1 127 -16 2228 95 3 0 chr12 28803401 28803685 -114982770 + AluSx SINE Alu 1 318 0 256 61 0 0 chr12 28803685 28803718 -114982737 + (TAAA)n Simple_repeat Simple_repeat 2 156 0 1455 188 0 54 chr12 28805136 28805461 -114980994 - AluJo SINE Alu 0 309 1 436 262 168 0 chr12 28805787 28805961 -114980494 + MIR3 SINE MIR 4 201 -61 216 0 0 0 chr12 28806384 28806408 -114980047 + (CAGC)n Simple_repeat Simple_repeat 2 25 0 398 197 1 48 chr12 28806909 28807000 -114979455 + MIR SINE MIR 72 158 -62 828 136 0 16 chr12 28807522 28807647 -114978808 - FRAM SINE Alu -25 151 29 567 265 29 6 chr12 28807799 28807969 -114978486 + MIR SINE MIR 77 250 -12 2131 112 0 0 chr12 28808710 28809006 -114977449 - AluSx SINE Alu -11 301 6 2375 66 0 10 chr12 28809199 28809504 -114976951 + AluY SINE Alu 1 302 -9 477 284 121 16 chr12 28810085 28810275 -114976180 + MIR SINE MIR 53 262 0 22 80 0 0 chr12 28810352 28810402 -114976053 + AT_rich Low_complexity Low_complexity 1 50 0 1540 154 36 56 chr12 28810721 28811026 -114975429 + AluJo SINE Alu 1 299 -13 606 253 87 99 chr12 28811263 28811575 -114974880 + L1MC4a LINE L1 5255 5569 -2239 1031 166 0 33 chr12 28811575 28811756 -114974699 - FAM SINE Alu 0 175 1 606 253 87 99 chr12 28811756 28811784 -114974671 + L1MC4a LINE L1 5569 5596 -2212 2249 69 6 25 chr12 28811784 28812101 -114974354 + AluY SINE Alu 1 311 0 606 253 87 99 chr12 28812101 28812337 -114974118 + L1MC4a LINE L1 5596 5825 -1983 2547 29 0 10 chr12 28812340 28812647 -114973808 + AluY SINE Alu 1 304 -7 2017 144 112 35 chr12 28812845 28813248 -114973207 + Tigger2a DNA MER2_type 1 434 0 23 97 0 0 chr12 28816018 28816090 -114970365 + GC_rich Low_complexity Low_complexity 1 72 0 24 32 0 0 chr12 28816375 28816406 -114970049 + GC_rich Low_complexity Low_complexity 1 31 0 2225 63 0 0 chr12 28817057 28817343 -114969112 + AluSg SINE Alu 1 286 -24 4834 133 22 8 chr12 28867682 28868593 -114917862 + L1MA1 LINE L1 5122 6042 -260 312 279 142 46 chr12 28868800 28868997 -114917458 + MARNA DNA Mariner 171 386 -200 180 0 0 0 chr12 28868997 28869017 -114917438 + (A)n Simple_repeat Simple_repeat 1 20 0 1939 170 3 0 chr12 28870790 28871102 -114915353 - AluSp SINE Alu 0 313 1 21 0 0 0 chr12 28872467 28872488 -114913967 + AT_rich Low_complexity Low_complexity 1 21 0 2152 130 0 0 chr12 28873375 28873675 -114912780 - AluSx SINE Alu -12 300 1 341 287 41 33 chr12 28873705 28873827 -114912628 - L2 LINE L2 0 3313 3191 351 0 0 0 chr12 28874080 28874119 -114912336 + (CA)n Simple_repeat Simple_repeat 2 40 0 398 213 96 25 chr12 28874239 28874367 -114912088 - L1ME4a LINE L1 -4 6087 1233 1769 140 49 18 chr12 28874409 28874695 -114911760 + AluJb SINE Alu 7 301 -11 433 292 66 20 chr12 28876215 28876415 -114910040 - MIR SINE MIR -48 214 2 250 398 18 0 chr12 28876415 28876528 -114909927 + MIR3 SINE MIR 40 154 -54 14171 128 12 3 chr12 28876703 28879625 -114906830 - L1PA10 LINE L1 0 6168 3230 1956 179 48 32 chr12 28879625 28880166 -114906289 + MLT2A2 LTR ERVL 4 554 0 10900 188 12 13 chr12 28880169 28882354 -114904101 - L1PA10 LINE L1 -2916 3230 1048 3028 130 27 0 chr12 28882561 28883006 -114903449 + LTR32 LTR ERVL 15 471 0 265 343 45 26 chr12 28883527 28883802 -114902653 - L2 LINE L2 -235 3037 2701 800 176 8 23 chr12 28884169 28884300 -114902155 - FLAM_C SINE Alu -4 129 1 29 28 0 0 chr12 28884309 28884345 -114902110 + AT_rich Low_complexity Low_complexity 1 36 0 2126 174 14 5 chr12 28884348 28884716 -114901739 - L1PA16 LINE L1 -5 6161 5791 288 296 139 0 chr12 28884809 28884924 -114901531 - L2 LINE L2 -1 3271 3141 760 231 19 52 chr12 28884936 28885022 -114901433 - MER6B DNA MER2_type -660 205 118 1856 152 10 23 chr12 28885022 28885325 -114901130 - AluJo SINE Alu -13 299 1 760 231 19 52 chr12 28885325 28885450 -114901005 - MER6B DNA MER2_type -747 118 1 322 325 150 49 chr12 28885544 28885950 -114900505 + LTR67 LTR ERVL 109 555 -2 819 147 41 100 chr12 28886354 28886524 -114899931 - AluSg/x SINE Alu -19 293 134 2258 191 19 40 chr12 28886707 28887188 -114899267 + MLT1D LTR MaLR 27 497 -8 6861 94 20 4 chr12 28887539 28888981 -114897474 - L1PA10 LINE L1 -4 6164 4707 593 257 73 116 chr12 28889060 28889551 -114896904 + LTR67 LTR ERVL 82 551 -6 592 341 70 61 chr12 28889551 28889618 -114896837 - L2 LINE L2 -451 2863 2798 420 20 0 0 chr12 28889618 28889667 -114896788 + (TAA)n Simple_repeat Simple_repeat 2 50 0 1631 191 7 0 chr12 28889670 28889953 -114896502 - AluJo SINE Alu -25 287 3 592 341 70 61 chr12 28889953 28890568 -114895887 - L2 LINE L2 -517 2797 2171 967 246 177 35 chr12 28890709 28891115 -114895340 + LTR16C LTR ERVL 28 491 0 188 309 173 25 chr12 28892000 28892081 -114894374 - L2 LINE L2 -20 3252 3160 712 211 0 0 chr12 28894554 28894677 -114891778 - FLAM_C SINE Alu -18 125 3 1358 218 84 20 chr12 28895612 28895970 -114890485 - L1MA10 LINE L1 -29 6305 5925 688 245 20 7 chr12 28896484 28896631 -114889824 + MER58B DNA MER1_type 193 341 0 193 310 69 0 chr12 28896640 28896727 -114889728 - L2 LINE L2 -733 2581 2489 185 180 20 0 chr12 28896792 28896842 -114889613 + (TG)n Simple_repeat Simple_repeat 1 51 0 276 311 94 9 chr12 28898797 28898903 -114887552 - L2 LINE L2 -1 3312 3198 1967 157 16 0 chr12 28900200 28900505 -114885950 + AluSx SINE Alu 1 310 -2 354 278 22 0 chr12 28903499 28903589 -114882866 + MER5A DNA MER1_type 9 100 -89 204 283 53 80 chr12 28903887 28904000 -114882455 + L2 LINE L2 3204 3313 0 2461 153 11 54 chr12 28904241 28904424 -114882031 - L1MB3 LINE L1 0 6183 5994 7212 50 11 29 chr12 28904424 28905993 -114880462 + SVA Other Other 1 1386 0 2461 153 11 54 chr12 28905993 28906271 -114880184 - L1MB3 LINE L1 -189 5994 5741 3577 183 34 28 chr12 28905996 28906271 -114880184 - L1MB3 LINE L1 -165 6018 5746 1981 118 147 21 chr12 28906271 28906651 -114879804 - MSTA LTR MaLR 0 428 1 3577 183 34 28 chr12 28906651 28907795 -114878660 - L1MB3 LINE L1 -437 5746 4594 972 251 119 22 chr12 28908874 28909276 -114877179 - LTR16A LTR ERVL -9 441 1 2136 96 24 3 chr12 28909348 28909472 -114876983 + AluY SINE Alu 1 121 -190 396 0 0 0 chr12 28909472 28909516 -114876939 + (CA)n Simple_repeat Simple_repeat 2 45 0 2136 96 24 3 chr12 28909516 28909683 -114876772 + AluY SINE Alu 121 298 -13 13484 165 41 26 chr12 28909928 28911900 -114874555 - L1MA8 LINE L1 -12 7300 5359 192 40 0 0 chr12 28911900 28911925 -114874530 + (TA)n Simple_repeat Simple_repeat 1 25 0 13484 165 41 26 chr12 28911925 28912624 -114873831 - L1MA8 LINE L1 -1953 5359 4672 2215 102 0 0 chr12 28912624 28912930 -114873525 + AluSx SINE Alu 1 306 0 13484 165 41 26 chr12 28912930 28914214 -114872241 - L1MA8 LINE L1 -2640 4672 3284 1639 175 3 28 chr12 28914214 28914499 -114871956 - AluJo SINE Alu -34 278 1 13484 165 41 26 chr12 28914499 28914894 -114871561 - L1MA8 LINE L1 -4028 3284 2896 1826 178 3 20 chr12 28914963 28915267 -114871188 - AluJo SINE Alu -13 299 1 671 271 12 91 chr12 28915329 28915408 -114871047 - L1MA8 LINE L1 -4907 2191 2107 2386 106 0 0 chr12 28915408 28915719 -114870736 + AluSx SINE Alu 1 311 -1 671 271 12 91 chr12 28915719 28916212 -114870243 - L1MA8 LINE L1 -4991 2107 1630 272 329 19 25 chr12 28916958 28917119 -114869336 - L1MA8 LINE L1 -5981 1117 958 225 125 0 42 chr12 28917769 28917817 -114868638 + L1MC4 LINE L1 6658 6703 -1339 647 289 57 30 chr12 28917836 28918016 -114868439 - L1MC4a LINE L1 -813 5333 5682 2385 74 0 13 chr12 28918016 28918326 -114868129 - AluY SINE Alu -5 306 1 647 289 57 30 chr12 28918326 28919025 -114867430 - L1MC4a LINE L1 -463 5683 5004 230 277 0 0 chr12 28919025 28919090 -114867365 + MIR SINE MIR 129 193 -69 404 256 39 45 chr12 28919195 28919351 -114867104 - L1MC4a LINE L1 -1815 4331 4177 2137 136 0 0 chr12 28919566 28919868 -114866587 + AluJb SINE Alu 1 302 -10 970 272 54 29 chr12 28920352 28920800 -114865655 - HAL1 LINE L1 -806 1701 1243 788 178 0 15 chr12 28921069 28921204 -114865251 + FLAM_C SINE Alu 1 133 0 293 231 133 79 chr12 28921375 28921855 -114864600 + L1ME4a LINE L1 5576 6081 -40 4873 138 16 25 chr12 28921891 28922800 -114863655 - L1MA6 LINE L1 0 6300 5400 1079 163 56 60 chr12 28922800 28923005 -114863450 + MSTB2 LTR MaLR 1 206 -251 1355 90 25 94 chr12 28923005 28923249 -114863206 - MER30 DNA MER1_type 0 230 4 1079 163 56 60 chr12 28923249 28923295 -114863160 + MSTB2 LTR MaLR 206 251 -206 4000 228 45 40 chr12 28923295 28924540 -114861915 - L1 LINE L1 -2776 4789 3552 2074 110 4 7 chr12 28924540 28924848 -114861607 - AluSc SINE Alu 0 307 1 4000 228 45 40 chr12 28924848 28926011 -114860444 - L1 LINE L1 -4013 3552 2396 214 321 0 0 chr12 28926822 28926878 -114859577 - MIR SINE MIR -152 110 55 252 225 58 17 chr12 28927137 28927257 -114859198 + (TA)n Simple_repeat Simple_repeat 1 125 0 2151 120 14 0 chr12 28927388 28927679 -114858776 + AluSx SINE Alu 1 295 -17 2134 107 7 0 chr12 28928337 28928626 -114857829 - AluSx SINE Alu -21 291 1 1855 109 25 11 chr12 28928727 28929002 -114857453 + AluSc SINE Alu 20 298 -11 270 339 8 65 chr12 28929070 28929194 -114857261 - MIR3 SINE MIR -2 206 90 724 208 52 5 chr12 28929435 28929627 -114856828 + L1MC3 LINE L1 7585 7785 0 261 0 0 0 chr12 28930693 28930722 -114855733 + (TG)n Simple_repeat Simple_repeat 2 30 0 1692 118 7 0 chr12 28930926 28931196 -114855259 + L1PB4 LINE L1 5420 5691 -465 2506 61 0 19 chr12 28931224 28931536 -114854919 - AluY SINE Alu -5 306 1 2595 157 6 10 chr12 28931560 28932044 -114854411 + L1PB4 LINE L1 5675 6156 0 445 337 83 0 chr12 28932167 28932348 -114854107 + LTR33 LTR ERVL 2 197 -324 370 225 99 28 chr12 28932407 28932589 -114853866 + LTR33 LTR ERVL 327 521 0 297 351 32 22 chr12 28932635 28932820 -114853635 - MIR SINE MIR -54 208 19 310 311 161 22 chr12 28934126 28934306 -114852149 + L2 LINE L2 2428 2632 -682 1719 192 11 50 chr12 28934314 28934694 -114851761 - MLT1A1 LTR MaLR 0 365 1 3245 153 20 77 chr12 28934957 28935689 -114850766 - LTR8 LTR ERV1 0 691 1 181 329 89 62 chr12 28936039 28936185 -114850270 + L2 LINE L2 2866 3015 -257 5344 119 13 35 chr12 28936248 28937162 -114849293 - MER4D LTR ERV1 -9 894 1 2675 158 176 14 chr12 28937235 28937861 -114848594 - LTR8A LTR ERV1 0 727 1 267 151 159 103 chr12 28938386 28938512 -114847943 + MLT1F LTR MaLR 410 542 0 277 348 17 9 chr12 28938653 28938768 -114847687 + LTR67 LTR ERVL 100 215 -342 414 384 33 0 chr12 28939332 28939483 -114846972 - L2 LINE L2 -1 3271 3116 1767 176 22 11 chr12 28939642 28940001 -114846454 - MLT1A1 LTR MaLR -2 363 1 303 347 79 73 chr12 28940158 28940564 -114845891 - L2 LINE L2 -559 2755 2340 327 49 0 0 chr12 28940564 28940605 -114845850 + (TG)n Simple_repeat Simple_repeat 1 41 0 303 347 79 73 chr12 28940605 28940941 -114845514 - L2 LINE L2 -974 2340 2008 2091 125 3 13 chr12 28941162 28941467 -114844988 - AluSx SINE Alu -10 302 1 1079 92 7 0 chr12 28941592 28941734 -114844721 + AluSp SINE Alu 2 144 -169 315 265 140 70 chr12 28941734 28941934 -114844521 + L2 LINE L2 2489 2702 -612 681 372 54 30 chr12 28942029 28942060 -114844395 + L2 LINE L2 2857 2886 -386 2451 53 13 0 chr12 28942060 28942360 -114844095 - AluY SINE Alu -7 304 1 681 372 54 30 chr12 28942360 28942734 -114843721 + L2 LINE L2 2886 3272 0 277 299 23 11 chr12 28942764 28942851 -114843604 + L3 LINE CR1 1474 1561 -16 1000 261 32 19 chr12 28944159 28944473 -114841982 - LTR16A LTR ERVL 0 450 133 405 39 0 0 chr12 28944578 28944629 -114841826 + (TG)n Simple_repeat Simple_repeat 1 51 0 703 216 45 61 chr12 28944645 28944955 -114841500 + L1MC5 LINE L1 7634 7938 -23 1684 167 30 3 chr12 28945513 28945849 -114840606 + L1MA5 LINE L1 5948 6292 -8 216 278 28 28 chr12 28946767 28946875 -114839580 + CT-rich Low_complexity Low_complexity 1 108 0 5209 131 58 26 chr12 28947421 28948759 -114837696 + L1MA5A LINE L1 4561 5957 -340 2222 93 10 0 chr12 28948759 28949048 -114837407 + AluSx SINE Alu 1 292 -20 5209 131 58 26 chr12 28949048 28949399 -114837056 + L1MA5A LINE L1 5957 6295 -2 2459 65 3 13 chr12 28950162 28950471 -114835984 + AluY SINE Alu 1 306 -5 614 302 36 22 chr12 28950551 28950773 -114835682 - MIR SINE MIR -29 233 9 1058 269 49 59 chr12 28952393 28952884 -114833571 + L2 LINE L2 2815 3300 -13 193 80 0 0 chr12 28954584 28954609 -114831846 - L2 LINE L2 -20 3293 3269 556 286 15 77 chr12 28955134 28955407 -114831048 + MIR SINE MIR 2 257 -5 286 313 111 0 chr12 28955493 28955592 -114830863 - MIR SINE MIR -92 170 61 550 239 46 0 chr12 28955619 28955749 -114830706 - MIR SINE MIR -6 256 121 194 313 60 90 chr12 28956622 28956726 -114829729 - L2 LINE L2 -1 3312 3213 493 189 226 9 chr12 28956726 28956832 -114829623 - FLAM_A SINE Alu -4 129 1 194 313 60 90 chr12 28956832 28956893 -114829562 - L2 LINE L2 -100 3213 3152 187 274 71 12 chr12 28956996 28957080 -114829375 - MIR3 SINE MIR -117 91 3 24 0 0 0 chr12 28957477 28957501 -114828954 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr12 28957854 28957880 -114828575 + AT_rich Low_complexity Low_complexity 1 26 0 329 176 14 0 chr12 28958028 28958102 -114828353 + (TG)n Simple_repeat Simple_repeat 2 76 0 359 345 52 11 chr12 28958598 28958772 -114827683 + MIR SINE MIR 21 201 -61 217 151 27 5 chr12 28958786 28958863 -114827592 - L2 LINE L2 -5 3308 3191 2013 188 3 6 chr12 28960029 28960375 -114826080 - MLT1A1 LTR MaLR 0 365 21 679 262 87 34 chr12 28960556 28960810 -114825645 - MIR SINE MIR -1 261 3 200 213 21 0 chr12 28960849 28960896 -114825559 + CT-rich Low_complexity Low_complexity 2 49 0 23 68 0 0 chr12 28961780 28961824 -114824631 + AT_rich Low_complexity Low_complexity 1 44 0 375 335 68 14 chr12 28962636 28962914 -114823541 - MLT1L LTR MaLR -180 435 143 225 189 0 0 chr12 28963952 28963989 -114822466 + L2 LINE L2 3221 3257 -15 247 282 0 43 chr12 28963995 28964112 -114822343 + CT-rich Low_complexity Low_complexity 3 114 0 1502 186 16 19 chr12 28964155 28964478 -114821977 + MER33 DNA MER1_type 3 324 0 230 136 23 0 chr12 28964930 28964974 -114821481 + (TA)n Simple_repeat Simple_repeat 1 45 0 501 132 8 147 chr12 28965003 28965132 -114821323 + L1MC1 LINE L1 4094 4204 -1942 6677 141 22 4 chr12 28965141 28966271 -114820184 + L1MC1 LINE L1 5185 6333 0 449 193 166 35 chr12 28966271 28966416 -114820039 - MER103 DNA DNA 0 166 3 23 33 0 0 chr12 28967066 28967096 -114819359 + AT_rich Low_complexity Low_complexity 1 30 0 4207 169 57 35 chr12 28967502 28968508 -114817947 + L1MB7 LINE L1 5157 6184 0 281 375 69 17 chr12 28969297 28969529 -114816926 + MIR SINE MIR 2 245 -17 433 268 131 16 chr12 28969597 28969780 -114816675 + L1ME LINE L1 5574 5777 -344 1142 152 81 7 chr12 28969852 28970168 -114816287 + L1MB2 LINE L1 5144 5474 -709 279 0 0 0 chr12 28970170 28970201 -114816254 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 733 189 8 23 chr12 28970206 28970338 -114816117 + FLAM_C SINE Alu 2 131 -12 3684 163 32 26 chr12 28970348 28970688 -114815767 + L1MB2 LINE L1 5486 5822 -349 2676 42 0 0 chr12 28970688 28970997 -114815458 + AluY SINE Alu 1 309 -2 3684 163 32 26 chr12 28970997 28971337 -114815118 + L1MB2 LINE L1 5822 6170 -1 1669 182 11 0 chr12 28971488 28971774 -114814681 - AluJo SINE Alu -23 289 1 446 265 132 34 chr12 28972932 28973136 -114813319 + MIR SINE MIR 20 243 -19 2331 99 0 0 chr12 28973250 28973542 -114812913 - AluSg SINE Alu -13 297 6 2617 24 0 0 chr12 28973907 28974197 -114812258 - L1PA2 LINE L1 0 6155 5866 1888 183 0 6 chr12 28974559 28974870 -114811585 - AluJb SINE Alu -3 309 1 328 313 199 12 chr12 28975116 28975282 -114811173 - L2 LINE L2 -1 3271 3075 340 294 65 24 chr12 28975293 28975463 -114810992 + MIR SINE MIR 58 234 -28 562 279 61 6 chr12 28975782 28975947 -114810508 + L2 LINE L2 2899 3072 -241 756 300 60 0 chr12 28975954 28976187 -114810268 + MIR SINE MIR 1 247 -15 2115 121 0 0 chr12 28976473 28976787 -114809668 + AluSx SINE Alu 1 314 0 286 253 0 0 chr12 28976940 28977015 -114809440 + MER103 DNA DNA 11 85 -81 201 133 0 0 chr12 28978299 28978329 -114808126 + (CATA)n Simple_repeat Simple_repeat 3 32 0 301 314 146 22 chr12 28978426 28978563 -114807892 - L2 LINE L2 0 3272 3119 446 298 62 77 chr12 28979489 28979504 -114806951 - MLT1K LTR MaLR -112 476 462 1699 205 30 19 chr12 28979504 28979865 -114806590 + MLT1A1 LTR MaLR 1 365 0 446 298 62 77 chr12 28979865 28980185 -114806270 - MLT1K LTR MaLR -126 462 146 24 0 0 0 chr12 28980278 28980302 -114806153 + AT_rich Low_complexity Low_complexity 1 24 0 2273 117 0 0 chr12 28980316 28980625 -114805830 + AluSx SINE Alu 1 309 -3 2385 109 0 0 chr12 28980636 28980948 -114805507 + AluSx SINE Alu 1 312 0 1137 186 145 41 chr12 28980948 28981313 -114805142 - LTR37A LTR ERV1 -23 403 1 1987 132 6 38 chr12 28982127 28982475 -114803980 - AluSx SINE Alu 0 338 1 195 42 0 0 chr12 28983828 28983852 -114802603 + (TG)n Simple_repeat Simple_repeat 1 24 0 210 118 0 0 chr12 28983852 28983886 -114802569 + (GA)n Simple_repeat Simple_repeat 2 35 0 664 241 30 45 chr12 28984118 28984317 -114802138 + MIR SINE MIR 21 216 -46 341 273 83 41 chr12 28985480 28985601 -114800854 - L2 LINE L2 -5 3267 3142 24 0 0 0 chr12 28987446 28987470 -114798985 + AT_rich Low_complexity Low_complexity 1 24 0 5471 76 10 0 chr12 28987913 28988597 -114797858 + L1PA13 LINE L1 5472 6162 -1 24 53 0 0 chr12 28990451 28990489 -114795966 + AT_rich Low_complexity Low_complexity 1 38 0 2255 95 30 0 chr12 28991569 28991864 -114794591 + AluSx SINE Alu 1 304 -8 387 105 0 0 chr12 28992401 28992458 -114793997 + (TA)n Simple_repeat Simple_repeat 2 58 0 232 49 73 0 chr12 28992486 28992527 -114793928 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 251 143 0 18 chr12 28992591 28992647 -114793808 + (TA)n Simple_repeat Simple_repeat 1 55 0 319 37 19 37 chr12 28993357 28993411 -114793044 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 557 286 98 10 chr12 28993457 28993660 -114792795 - MIR SINE MIR -13 249 29 209 215 9 56 chr12 28993869 28993976 -114792479 + (TTAAA)n Simple_repeat Simple_repeat 4 105 0 414 300 26 42 chr12 28995054 28995244 -114791211 + MIR3 SINE MIR 20 206 -2 383 0 21 0 chr12 28995359 28995406 -114791049 + (TC)n Simple_repeat Simple_repeat 1 48 0 300 53 0 0 chr12 28995596 28995634 -114790821 + (GA)n Simple_repeat Simple_repeat 2 39 0 510 265 8 43 chr12 28996226 28996371 -114790084 - MIR SINE MIR -61 147 20 384 281 117 93 chr12 29001244 29001989 -114784466 - L1M2 LINE L1 -5716 1133 371 195 42 0 0 chr12 29002917 29002941 -114783514 + (CA)n Simple_repeat Simple_repeat 2 25 0 243 0 0 0 chr12 29003148 29003175 -114783280 + (A)n Simple_repeat Simple_repeat 1 27 0 324 0 0 0 chr12 29005218 29005254 -114781201 + (TG)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr12 29005253 29005283 -114781172 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 225 0 0 0 chr12 29010574 29010599 -114775856 + (T)n Simple_repeat Simple_repeat 1 25 0 296 297 0 40 chr12 29010754 29010855 -114775600 + GA-rich Low_complexity Low_complexity 2 98 0 255 253 0 72 chr12 29012306 29012389 -114774066 - L2 LINE L2 0 3272 3196 412 270 98 43 chr12 29012478 29012641 -114773814 + L2 LINE L2 3142 3313 0 250 331 95 34 chr12 29014265 29014413 -114772042 + MIR3 SINE MIR 2 158 -50 4357 99 3 2 chr12 29014579 29015207 -114771248 + L1PB2 LINE L1 5523 6151 0 943 244 103 63 chr12 29016675 29017258 -114769197 + MLT1L LTR MaLR 3 608 -7 290 219 0 31 chr12 29017949 29018013 -114768442 + HsTC2 DNA Tc2 80 141 -1757 * 733 215 135 33 chr12 29018012 29018302 -114768153 + HsTC2 DNA Tc2 1282 1541 -357 1856 168 9 25 chr12 29018302 29018618 -114767837 + AluJo SINE Alu 1 311 -1 733 215 135 33 chr12 29018618 29018726 -114767729 + HsTC2 DNA Tc2 1541 1898 0 2204 110 0 10 chr12 29018773 29019073 -114767382 - AluSq SINE Alu -15 298 2 343 360 18 6 chr12 29019136 29019300 -114767155 - LTR67 LTR ERVL -347 210 45 673 257 50 30 chr12 29020527 29020962 -114765493 - MLT1H LTR MaLR 0 549 13 6507 164 17 26 chr12 29021266 29021297 -114765158 + L1MB1 LINE L1 3930 3960 -2208 2143 124 0 17 chr12 29021297 29021596 -114764859 + AluSx SINE Alu 1 294 -18 6507 164 17 26 chr12 29021596 29023310 -114763145 + L1MB1 LINE L1 3960 5689 -479 1773 171 3 23 chr12 29023310 29023619 -114762836 - AluJo SINE Alu -9 303 1 6507 164 17 26 chr12 29023619 29023851 -114762604 + L1MB1 LINE L1 5689 5922 -246 692 163 32 8 chr12 29023851 29023974 -114762481 + FLAM_C SINE Alu 1 126 -7 6507 164 17 26 chr12 29023974 29024252 -114762203 + L1MB1 LINE L1 5922 6165 -3 260 373 45 70 chr12 29024524 29024768 -114761687 - L2 LINE L2 -2 3270 3033 386 259 76 70 chr12 29025269 29025454 -114761001 + MER5A DNA MER1_type 1 186 -3 576 229 21 42 chr12 29025464 29025608 -114760847 + MER5B DNA MER1_type 36 176 -2 409 329 161 0 chr12 29025618 29025773 -114760682 - MER5A DNA MER1_type 0 189 10 205 162 0 0 chr12 29026250 29026287 -114760168 + (CA)n Simple_repeat Simple_repeat 1 37 0 1917 154 112 30 chr12 29026295 29026677 -114759778 + MLT2C2 LTR ERVL 1 423 -41 222 37 0 0 chr12 29026677 29026704 -114759751 + (TCTCTG)n Simple_repeat Simple_repeat 2 28 0 1917 154 112 30 chr12 29026704 29026750 -114759705 + MLT2C2 LTR ERVL 423 464 0 680 305 68 54 chr12 29026914 29027340 -114759115 + L2 LINE L2 2882 3313 0 183 333 25 25 chr12 29027372 29027453 -114759002 - MER5A DNA MER1_type -26 163 83 284 328 15 45 chr12 29027592 29027729 -114758726 + MER5B DNA MER1_type 36 179 -10 561 321 100 6 chr12 29027870 29028209 -114758246 - MLT1L LTR MaLR -26 589 219 308 24 0 24 chr12 29028563 29028605 -114757850 + (TG)n Simple_repeat Simple_repeat 2 42 0 2123 123 3 23 chr12 29028858 29029167 -114757288 + AluSx SINE Alu 1 303 -9 1681 138 190 11 chr12 29029315 29029678 -114756777 + MSTA LTR MaLR 1 428 0 3581 87 47 2 chr12 29031927 29032457 -114753998 - MER41A LTR ERV1 0 554 1 370 364 87 18 chr12 29032871 29033157 -114753298 + L2 LINE L2 2656 2961 -353 199 317 67 94 chr12 29033252 29033432 -114753023 + L2 LINE L2 3090 3264 -8 23 0 0 0 chr12 29033485 29033508 -114752947 + AT_rich Low_complexity Low_complexity 1 23 0 316 93 0 173 chr12 29033535 29033610 -114752845 - MER33 DNA MER1_type -1 362 301 372 199 286 19 chr12 29033689 29033895 -114752560 - L1MEd LINE L1 -5270 849 589 27 29 0 0 chr12 29034087 29034121 -114752334 + AT_rich Low_complexity Low_complexity 1 34 0 33653 33 0 5 chr12 29034121 29039207 -114747248 - L1PA3 LINE L1 0 6155 1094 797 61 18 0 chr12 29039189 29039303 -114747152 - L1PA3 LINE L1 -6030 116 1 * 1004 211 57 8 chr12 29039404 29039669 -114746786 - MER33 DNA MER1_type -46 278 1 315 96 0 0 chr12 29040042 29040094 -114746361 + (TC)n Simple_repeat Simple_repeat 1 52 0 272 242 16 0 chr12 29040389 29040451 -114746004 + (CAGA)n Simple_repeat Simple_repeat 4 66 0 2006 154 7 0 chr12 29040707 29041006 -114745449 + AluJb SINE Alu 1 301 -11 24 0 0 0 chr12 29041225 29041249 -114745206 + AT_rich Low_complexity Low_complexity 1 24 0 1456 190 70 18 chr12 29042747 29043131 -114743324 - L1MA7 LINE L1 -22 6269 5866 501 265 74 6 chr12 29043146 29043308 -114743147 - MIR SINE MIR -39 223 51 256 235 0 0 chr12 29043372 29043423 -114743032 - MER45 DNA AcHobo 0 1581 1531 420 216 128 0 chr12 29043554 29043656 -114742799 - MER45 DNA AcHobo -1466 115 1 271 371 48 30 chr12 29043690 29043857 -114742598 - L2 LINE L2 -62 3210 3041 198 287 57 82 chr12 29045542 29045664 -114740791 + L2 LINE L2 3139 3257 -15 228 67 0 0 chr12 29045693 29045723 -114740732 + (A)n Simple_repeat Simple_repeat 1 30 0 355 282 83 88 chr12 29047738 29048135 -114738320 + L2 LINE L2 2166 2560 -754 204 300 100 0 chr12 29048183 29048243 -114738212 + L2 LINE L2 3136 3201 -71 1205 235 74 60 chr12 29048287 29048790 -114737665 - MLT1H LTR MaLR -3 546 37 361 276 62 100 chr12 29048890 29049100 -114737355 + MIR3 SINE MIR 2 203 -5 1436 188 0 85 chr12 29050996 29051186 -114735269 - AluJb SINE Alu 0 312 162 414 0 0 0 chr12 29051186 29051232 -114735223 + (TA)n Simple_repeat Simple_repeat 2 47 0 1436 188 0 85 chr12 29051232 29051381 -114735074 - AluJb SINE Alu -150 162 2 201 301 24 48 chr12 29051680 29051763 -114734692 - L2 LINE L2 -1 3271 3191 286 344 151 5 chr12 29052119 29052305 -114734150 + MIR SINE MIR 6 218 -44 1094 190 35 0 chr12 29052491 29052691 -114733764 - AluJb SINE Alu -19 293 87 840 307 43 0 chr12 29053703 29053934 -114732521 + MIR SINE MIR 22 262 0 1872 197 42 50 chr12 29053955 29054076 -114732379 - MLT1F1 LTR MaLR -3 564 444 2735 131 21 0 chr12 29054076 29054495 -114731960 - MSTA LTR MaLR 0 428 1 1872 197 42 50 chr12 29054495 29054922 -114731533 - MLT1F1 LTR MaLR -123 444 25 2114 145 0 0 chr12 29055893 29056196 -114730259 - AluJo SINE Alu -9 303 1 220 308 103 65 chr12 29056678 29056726 -114729729 - L2 LINE L2 -76 3196 3151 1970 129 7 20 chr12 29056726 29057021 -114729434 + AluSx SINE Alu 1 291 -21 220 308 103 65 chr12 29057021 29057287 -114729168 - L2 LINE L2 -121 3151 2870 285 284 42 67 chr12 29057287 29057504 -114728951 + MIR SINE MIR 4 218 -44 225 0 0 0 chr12 29057643 29057668 -114728787 + (TC)n Simple_repeat Simple_repeat 2 26 0 310 300 0 0 chr12 29058936 29059016 -114727439 - L2 LINE L2 -1 3312 3233 391 241 166 14 chr12 29059064 29059209 -114727246 - MIR SINE MIR -84 178 12 22 70 0 0 chr12 29060165 29060208 -114726247 + AT_rich Low_complexity Low_complexity 1 43 0 205 342 42 25 chr12 29060986 29061106 -114725349 + MIR SINE MIR 20 141 -67 509 280 164 0 chr12 29061149 29061356 -114725099 + MIR SINE MIR 8 248 -14 4539 94 3 11 chr12 29061365 29062006 -114724449 + L1PA11 LINE L1 5535 6170 -4 2383 74 0 0 chr12 29062016 29062313 -114724142 + AluY SINE Alu 1 297 -14 2418 76 3 7 chr12 29062882 29063186 -114723269 - AluSc SINE Alu -6 303 1 291 273 36 27 chr12 29063523 29063633 -114722822 - MER81 DNA DNA -2 112 2 262 192 0 0 chr12 29063726 29063778 -114722677 + MER94 DNA DNA 4 55 -79 348 215 65 11 chr12 29065283 29065376 -114721079 - MIR SINE MIR -24 238 141 309 326 0 11 chr12 29065443 29065535 -114720920 + MER81 DNA DNA 18 108 -6 247 357 0 0 chr12 29065543 29065613 -114720842 - MIR SINE MIR -191 71 2 606 296 154 22 chr12 29066153 29066471 -114719984 - L3 LINE CR1 -63 1514 1155 2246 112 3 0 chr12 29067270 29067565 -114718890 + AluSx SINE Alu 2 297 -15 2107 181 3 5 chr12 29068170 29068557 -114717898 - MLT1B LTR MaLR -4 386 1 279 292 200 8 chr12 29070333 29070463 -114715992 - MIR SINE MIR -57 205 51 1928 104 4 0 chr12 29070495 29070746 -114715709 + AluSx SINE Alu 1 252 -60 1541 201 87 14 chr12 29072195 29072564 -114713891 - MSTD LTR MaLR 0 396 1 302 267 17 52 chr12 29072800 29072916 -114713539 + MIR SINE MIR 145 256 -6 686 137 8 0 chr12 29073433 29073557 -114712898 - L1P LINE L1 -1369 4777 4653 22 99 0 0 chr12 29074317 29074388 -114712067 + AT_rich Low_complexity Low_complexity 1 71 0 510 17 0 0 chr12 29074619 29074678 -114711777 + (CA)n Simple_repeat Simple_repeat 2 60 0 5479 55 0 7 chr12 29074806 29075503 -114710952 - L1PA8 LINE L1 0 6172 5481 250 277 22 36 chr12 29075572 29075709 -114710746 + L1ME LINE L1 5529 5663 -458 8067 174 13 10 chr12 29075727 29077384 -114709071 - L1P LINE L1 -1126 5020 3360 5653 121 20 5 chr12 29077382 29078320 -114708135 + L1PA15 LINE L1 5217 6165 0 * 27 0 0 0 chr12 29078427 29078454 -114708001 + AT_rich Low_complexity Low_complexity 1 27 0 306 0 0 0 chr12 29078937 29078971 -114707484 + (CAA)n Simple_repeat Simple_repeat 1 34 0 198 378 157 16 chr12 29079201 29079386 -114707069 - L2 LINE L2 -192 3080 2870 2293 117 0 0 chr12 29079490 29079790 -114706665 + AluSq SINE Alu 1 300 -13 323 329 25 68 chr12 29080128 29080289 -114706166 + L3 LINE CR1 1383 1536 -41 435 269 108 7 chr12 29083668 29083840 -114702615 - MIR SINE MIR -59 203 23 21 0 0 0 chr12 29084106 29084127 -114702328 + AT_rich Low_complexity Low_complexity 1 21 0 1665 130 11 115 chr12 29085070 29085417 -114701038 - AluSx SINE Alu -1 311 1 486 219 48 9 chr12 29085768 29085873 -114700582 + L2 LINE L2 3205 3313 0 362 185 0 22 chr12 29086117 29086209 -114700246 + CT-rich Low_complexity Low_complexity 3 92 0 1118 161 5 21 chr12 29086245 29086431 -114700024 - AluJb SINE Alu -36 276 94 207 0 0 0 chr12 29086853 29086876 -114699579 + (CA)n Simple_repeat Simple_repeat 2 24 0 288 111 0 0 chr12 29086883 29086928 -114699527 + (GA)n Simple_repeat Simple_repeat 2 46 0 468 299 101 10 chr12 29086972 29087179 -114699276 + MIR SINE MIR 20 245 -17 2400 83 0 10 chr12 29087253 29087566 -114698889 - AluSg SINE Alu 0 310 1 271 217 61 26 chr12 29088524 29088639 -114697816 + LTR67 LTR ERVL 439 557 0 21 0 0 0 chr12 29088918 29088939 -114697516 + AT_rich Low_complexity Low_complexity 1 21 0 827 264 66 14 chr12 29090067 29090415 -114696040 - L1MC4 LINE L1 -124 7918 7553 241 214 107 0 chr12 29091379 29091435 -114695020 + MIR SINE MIR 93 154 -108 2348 83 3 10 chr12 29091765 29092066 -114694389 - AluSg SINE Alu -11 299 1 211 291 174 0 chr12 29094602 29094688 -114691767 - MIR3 SINE MIR -7 201 101 374 171 0 0 chr12 29095195 29095265 -114691190 - MER116 DNA Mariner -7 73 4 1240 304 30 24 chr12 29098241 29098748 -114687707 + L1MA8 LINE L1 1 510 -5771 13508 198 49 15 chr12 29098763 29101569 -114684886 + L1MA8 LINE L1 863 3573 -2922 1679 179 26 13 chr12 29101569 29101871 -114684584 - AluJb SINE Alu -6 306 1 13508 198 49 15 chr12 29101871 29104845 -114681610 + L1MA8 LINE L1 3573 6493 -2 23 68 0 0 chr12 29104846 29104890 -114681565 + AT_rich Low_complexity Low_complexity 1 44 0 359 271 245 0 chr12 29105062 29105213 -114681242 + MIR SINE MIR 2 189 -73 1553 178 15 109 chr12 29106007 29106412 -114680043 + MLT1E1 LTR MaLR 288 654 0 640 171 8 0 chr12 29106416 29106545 -114679910 - L1 LINE L1 -2604 3542 3413 7164 175 43 22 chr12 29106545 29107489 -114678966 + L1MB1 LINE L1 3506 4429 -1760 2237 105 0 19 chr12 29107489 29107802 -114678653 + AluY SINE Alu 1 307 -4 7164 175 43 22 chr12 29107802 29109463 -114676992 + L1MB1 LINE L1 4429 6172 -17 647 270 12 0 chr12 29109621 29109784 -114676671 - MLT2E LTR ERVL -22 606 442 1145 235 62 19 chr12 29109890 29110260 -114676195 - L1ME1 LINE L1 -8 6158 5773 22 70 0 0 chr12 29110263 29110306 -114676149 + AT_rich Low_complexity Low_complexity 1 43 0 482 184 0 0 chr12 29110383 29110481 -114675974 - L1M4 LINE L1 -1949 4197 4100 3305 290 25 19 chr12 29110539 29111559 -114674896 - ERVL LTR ERVL -2879 2885 1860 2014 181 83 5 chr12 29111657 29112055 -114674400 + MSTB1 LTR MaLR 4 432 0 695 219 115 89 chr12 29112369 29112752 -114673703 - MER34B LTR ERV1 -159 406 14 185 305 126 0 chr12 29112938 29113033 -114673422 + L2 LINE L2 3200 3306 -7 195 305 17 17 chr12 29113894 29113953 -114672502 + L2 LINE L2 3158 3216 -56 747 194 62 0 chr12 29114158 29114302 -114672153 + FRAM SINE Alu 11 163 -13 254 181 63 110 chr12 29114361 29114472 -114671983 - HAL1b LINE L1 -437 911 805 1726 124 109 29 chr12 29114472 29114819 -114671636 - THE1C LTR MaLR 0 375 1 254 181 63 110 chr12 29114819 29114834 -114671621 - HAL1b LINE L1 -543 805 791 410 315 11 14 chr12 29115744 29115905 -114670550 + MIR SINE MIR 19 178 -62 514 210 464 0 chr12 29115935 29116183 -114670272 + L2 LINE L2 2328 2690 -624 839 284 66 49 chr12 29116413 29116762 -114669693 + L2 LINE L2 2959 3313 0 223 246 51 68 chr12 29118968 29119086 -114667369 - MIR SINE MIR -56 206 91 22 0 0 0 chr12 29120714 29120736 -114665719 + AT_rich Low_complexity Low_complexity 1 22 0 212 336 61 23 chr12 29122040 29122171 -114664284 - MIR SINE MIR 0 262 127 788 282 60 0 chr12 29122232 29122448 -114664007 + MIR SINE MIR 2 230 -32 234 105 0 0 chr12 29122467 29122505 -114663950 + (TTA)n Simple_repeat Simple_repeat 1 38 0 200 224 15 0 chr12 29123026 29123093 -114663362 + (TA)n Simple_repeat Simple_repeat 2 69 0 798 283 128 8 chr12 29124390 29124772 -114661683 + MLT1J LTR MaLR 65 492 -19 260 300 0 0 chr12 29124913 29124973 -114661482 + L2 LINE L2 3200 3259 -54 834 136 14 4 chr12 29125114 29125398 -114661057 + CT-rich Low_complexity Low_complexity 1 287 0 502 201 187 22 chr12 29125398 29125537 -114660918 - FRAM SINE Alu -16 160 1 804 325 16 0 chr12 29125537 29125789 -114660666 - MIR SINE MIR -5 257 2 445 200 92 46 chr12 29126415 29126545 -114659910 + MER63A DNA MER1_type 75 210 0 2202 110 0 7 chr12 29126708 29127009 -114659446 - AluSx SINE Alu -13 299 1 204 67 0 0 chr12 29127714 29127744 -114658711 + (T)n Simple_repeat Simple_repeat 1 30 0 396 321 34 83 chr12 29129675 29129940 -114656515 + MIR SINE MIR 10 261 -1 2152 120 35 41 chr12 29130358 29130724 -114655731 - THE1B LTR MaLR 0 364 1 292 243 138 59 chr12 29132778 29132930 -114653525 + MER5B DNA MER1_type 1 164 -14 6957 35 0 4 chr12 29132991 29133824 -114652631 + L1PA3 LINE L1 5326 6155 0 255 336 116 6 chr12 29133886 29134039 -114652416 - MIR SINE MIR -40 168 38 2435 159 26 9 chr12 29134194 29134615 -114651840 - MSTA LTR MaLR 0 428 1 45 19 0 0 chr12 29134909 29134961 -114651494 + AT_rich Low_complexity Low_complexity 1 52 0 211 220 0 20 chr12 29136276 29136326 -114650129 - L2 LINE L2 0 3272 3224 637 222 38 70 chr12 29136627 29136812 -114649643 - MER91B DNA MER1_type -10 180 2 23 0 0 0 chr12 29137258 29137281 -114649174 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr12 29138371 29138411 -114648044 + AT_rich Low_complexity Low_complexity 1 40 0 5206 146 28 9 chr12 29138564 29139808 -114646647 + L1PB4 LINE L1 4885 6153 -3 570 322 45 66 chr12 29142403 29142782 -114643673 + HAL1b LINE L1 12 382 -966 1212 276 72 7 chr12 29143124 29143581 -114642874 + L1MC4a LINE L1 5382 5868 -1940 355 288 41 0 chr12 29143877 29144023 -114642432 + L1ME3 LINE L1 2262 2413 -3733 410 301 6 25 chr12 29144132 29144295 -114642160 + L1ME3 LINE L1 2644 2803 -3343 431 38 0 0 chr12 29144296 29144349 -114642106 - MADE1 DNA Mariner -17 63 11 413 57 0 0 chr12 29144343 29144396 -114642059 - MADE1 DNA Mariner -27 53 1 * 581 267 131 64 chr12 29144475 29145076 -114641379 + L1ME3 LINE L1 2921 3607 -2539 1721 99 5 0 chr12 29145076 29145297 -114641158 + AluSp SINE Alu 1 222 -91 581 267 131 64 chr12 29145297 29145593 -114640862 + L1ME3 LINE L1 3607 3881 -2265 833 288 49 98 chr12 29145629 29146219 -114640236 - L2 LINE L2 0 3313 2739 1689 174 11 0 chr12 29146219 29146506 -114639949 - AluJo SINE Alu -18 294 5 833 288 49 98 chr12 29146506 29146702 -114639753 - L2 LINE L2 -574 2739 2535 1717 240 60 31 chr12 29146716 29147196 -114639259 - MLT2B1 LTR ERVL 0 520 27 1186 290 87 27 chr12 29147283 29148967 -114637488 + L1ME3 LINE L1 4079 5932 -230 1456 260 37 20 chr12 29149241 29149695 -114636760 + L1ME3A LINE L1 5657 6118 -52 8111 172 34 13 chr12 29149759 29150031 -114636424 + L1M2 LINE L1 3584 3849 -2297 1948 143 26 54 chr12 29150031 29150417 -114636038 - THE1C LTR MaLR 0 375 1 8111 172 34 13 chr12 29150417 29151786 -114634669 + L1M2 LINE L1 3849 5259 -887 309 186 0 0 chr12 29151799 29151869 -114634586 + L1M2 LINE L1 5390 5459 -832 1061 234 43 40 chr12 29151906 29152051 -114634404 - MLT1J LTR MaLR -205 306 163 2488 129 3 3 chr12 29152051 29152415 -114634040 + THE1B LTR MaLR 1 364 0 10011 111 37 37 chr12 29152415 29153995 -114632460 + THE1B-int LTR MaLR 1 1580 0 2246 120 27 33 chr12 29153995 29154361 -114632094 + THE1B LTR MaLR 1 364 0 1061 234 43 40 chr12 29154361 29154516 -114631939 - MLT1J LTR MaLR -347 164 3 966 264 18 0 chr12 29154595 29154815 -114631640 - MER58A DNA MER1_type 0 224 1 2435 136 29 26 chr12 29154821 29155240 -114631215 - MSTB LTR MaLR -5 421 2 188 364 15 15 chr12 29155273 29155339 -114631116 + L2 LINE L2 3157 3222 -50 7425 35 3 0 chr12 29155367 29156296 -114630159 + L1PA3 LINE L1 5224 6155 0 252 0 0 0 chr12 29156460 29156488 -114629967 + (TG)n Simple_repeat Simple_repeat 2 29 0 207 114 0 0 chr12 29156489 29156524 -114629931 + (TGG)n Simple_repeat Simple_repeat 3 37 0 261 195 0 0 chr12 29158426 29158467 -114627988 - MSTB LTR MaLR -125 301 261 388 191 12 48 chr12 29158639 29158723 -114627732 + MER58A DNA MER1_type 1 81 -26 1196 270 24 15 chr12 29158723 29159060 -114627395 - MER93a LTR ERV1 0 402 63 721 181 42 14 chr12 29159151 29159295 -114627160 + MER58A DNA MER1_type 74 221 -3 1797 159 7 26 chr12 29159790 29160098 -114626357 + AluJb SINE Alu 5 306 -6 306 337 114 10 chr12 29160782 29160975 -114625480 + MIR SINE MIR 34 246 -16 1113 158 91 10 chr12 29161830 29162039 -114624416 - AluJb SINE Alu -23 289 64 468 134 0 0 chr12 29162039 29162106 -114624349 + AluJb SINE Alu 52 118 -194 42 20 0 0 chr12 29162106 29162155 -114624300 + AT_rich Low_complexity Low_complexity 1 49 0 654 226 37 5 chr12 29162161 29162351 -114624104 + L1M4 LINE L1 1306 1501 -4883 660 294 16 102 chr12 29162367 29162748 -114623707 - L2 LINE L2 -2672 642 295 310 328 41 51 chr12 29162773 29162968 -114623487 + HAL1b LINE L1 105 297 -1051 24 32 0 0 chr12 29163007 29163038 -114623417 + AT_rich Low_complexity Low_complexity 1 31 0 2063 148 0 7 chr12 29163236 29163541 -114622914 + AluSx SINE Alu 1 303 -9 2967 70 8 0 chr12 29163818 29164190 -114622265 - THE1C LTR MaLR 0 375 1 554 245 180 55 chr12 29164512 29164712 -114621743 - MIR SINE MIR -10 252 28 22 35 0 0 chr12 29166112 29166141 -114620314 + AT_rich Low_complexity Low_complexity 1 29 0 264 185 0 0 chr12 29166565 29166619 -114619836 + (TG)n Simple_repeat Simple_repeat 2 55 0 407 267 64 74 chr12 29166740 29167193 -114619262 + L1M4 LINE L1 3288 3729 -2653 849 284 77 34 chr12 29167240 29167628 -114618827 - MLT1J2 LTR MaLR -37 413 9 476 260 100 50 chr12 29167695 29167895 -114618560 - MER63A DNA MER1_type 0 210 1 23 0 0 0 chr12 29170110 29170133 -114616322 + AT_rich Low_complexity Low_complexity 1 23 0 692 269 105 56 chr12 29170146 29170719 -114615736 - L1MC4a LINE L1 -1642 6166 5566 588 248 47 24 chr12 29170763 29171017 -114615438 + L1MC5 LINE L1 7317 7576 -385 203 258 22 22 chr12 29171027 29171116 -114615339 + (TA)n Simple_repeat Simple_repeat 1 89 0 5453 50 1 0 chr12 29171127 29171791 -114614664 + L1PA7 LINE L1 5486 6150 -4 441 187 0 0 chr12 29171898 29171973 -114614482 - Tigger1 DNA MER2_type 0 2418 2344 * 3368 130 31 0 chr12 29171969 29172522 -114613933 - Tigger1 DNA MER2_type -981 1437 868 3080 109 68 8 chr12 29172529 29173015 -114613440 - L1PB1 LINE L1 -1 6150 5636 1761 168 37 0 chr12 29173557 29173855 -114612600 - AluJb SINE Alu -3 309 1 2666 148 21 48 chr12 29174919 29175509 -114610946 + MER51A LTR ERV1 1 634 0 2552 155 141 34 chr12 29175625 29176180 -114610275 - LTR18B LTR ERVL 0 614 1 9720 159 22 1 chr12 29176334 29177954 -114608501 - HERVL18 LTR ERVL 0 6047 4394 3702 186 3 3 chr12 29177956 29178584 -114607871 - HERVL18 LTR ERVL -2468 3579 2952 1103 235 4 6 chr12 29178598 29178880 -114607575 - HERVL18 LTR ERVL -2971 3076 2720 * 8430 165 5 7 chr12 29178879 29180333 -114606122 - HERVL18 LTR ERVL -3595 2452 939 1550 164 11 4 chr12 29180370 29180638 -114605817 - HERVL18 LTR ERVL -5774 273 4 2341 142 195 45 chr12 29180671 29181205 -114605250 - LTR18B LTR ERVL 0 614 1 825 305 65 11 chr12 29181213 29181567 -114604888 + MLT1K LTR MaLR 216 588 0 376 271 72 58 chr12 29182035 29182326 -114604129 - L1MC/D LINE L1 -2163 5645 5351 933 186 26 26 chr12 29183044 29183238 -114603217 + MER51D LTR ERV1 464 657 0 317 146 0 0 chr12 29184011 29184059 -114602396 + MER34-int LTR ERV1 728 775 -7041 466 309 34 15 chr12 29184185 29184480 -114601975 + MER34-int LTR ERV1 1544 1625 -5051 281 111 42 69 chr12 29184936 29185008 -114601447 + MER34-int LTR ERV1 1722 1791 -6329 1227 188 87 58 chr12 29185093 29185685 -114600770 + MER34-int LTR ERV1 1772 4170 -2506 558 236 20 7 chr12 29185952 29186100 -114600355 + MER34-int LTR ERV1 7667 7816 0 1059 157 10 25 chr12 29186439 29186636 -114599819 + MER51D LTR ERV1 464 657 0 285 254 110 51 chr12 29187190 29187308 -114599147 + MIR SINE MIR 134 258 -4 657 188 6 56 chr12 29187420 29187580 -114598875 - LTR32 LTR ERVL -1 470 319 498 152 0 0 chr12 29187634 29187713 -114598742 - LTR32 LTR ERVL -379 92 14 882 101 7 22 chr12 29188042 29188181 -114598274 + AluY SINE Alu 175 311 0 861 215 23 6 chr12 29188567 29188744 -114597711 - MER5A DNA MER1_type -9 180 1 27 73 0 0 chr12 29190134 29190189 -114596266 + AT_rich Low_complexity Low_complexity 1 55 0 188 281 24 49 chr12 29191830 29191912 -114594543 + MIR SINE MIR 58 137 -71 1672 198 55 38 chr12 29191959 29192435 -114594020 + Charlie1b DNA MER1_type 33 516 -7 228 247 13 52 chr12 29192598 29192675 -114593780 - MER5B DNA MER1_type 0 178 105 718 169 11 45 chr12 29193745 29193923 -114592532 - L1MB8 LINE L1 0 6178 6007 342 310 76 6 chr12 29193970 29194128 -114592327 + MER34 LTR ERV1 2 170 -372 38110 36 56 1 chr12 29194375 29200199 -114586256 + L1PA2 LINE L1 3 6153 -2 25 0 0 0 chr12 29201093 29201118 -114585337 + AT_rich Low_complexity Low_complexity 1 25 0 180 245 38 0 chr12 29201357 29201410 -114585045 + L3 LINE CR1 528 582 -995 685 133 46 67 chr12 29201461 29201656 -114584799 + L1MA7 LINE L1 6100 6290 -1 267 362 55 36 chr12 29201928 29202235 -114584220 - L2 LINE L2 -1230 2084 1772 1766 185 74 60 chr12 29202998 29203485 -114582970 - MLT1D LTR MaLR 0 505 12 2248 123 0 0 chr12 29203589 29203891 -114582564 - AluSx SINE Alu -10 302 1 417 66 0 0 chr12 29207348 29207409 -114579046 + (TG)n Simple_repeat Simple_repeat 2 62 0 291 233 55 110 chr12 29207930 29208002 -114578453 + MIR3 SINE MIR 61 123 -85 240 59 0 0 chr12 29208002 29208036 -114578419 + (TG)n Simple_repeat Simple_repeat 2 35 0 291 233 55 110 chr12 29208036 29208109 -114578346 + MIR3 SINE MIR 123 198 -10 615 290 28 16 chr12 29208181 29208436 -114578019 - MIR SINE MIR -3 259 2 317 341 73 55 chr12 29209411 29209575 -114576880 + L2 LINE L2 3091 3257 -15 386 282 8 16 chr12 29209880 29210004 -114576451 - MLT1H LTR MaLR -389 160 38 789 218 19 51 chr12 29212131 29212347 -114574108 - MER3 DNA MER1_type 0 209 1 7472 221 12 5 chr12 29212912 29214647 -114571808 - L1PA13 LINE L1 -2273 4524 2778 4708 52 2 1 chr12 29214631 29215543 -114570912 - L1PA5 LINE L1 -457 5697 4785 * 3697 48 0 2 chr12 29215543 29215985 -114570470 + L1PA5 LINE L1 5689 6141 -13 2893 249 42 11 chr12 29215990 29217041 -114569414 + L1M4 LINE L1 2277 3360 -2786 5179 224 16 22 chr12 29217043 29218709 -114567746 - L1PA13 LINE L1 -3999 2798 1123 1322 259 84 50 chr12 29218727 29218949 -114567506 - L1MEc LINE L1 -3198 3017 2804 1869 105 72 56 chr12 29218949 29219254 -114567201 - AluSg SINE Alu 0 310 1 1322 259 84 50 chr12 29219254 29219768 -114566687 - L1MEc LINE L1 -3411 2804 2256 627 261 33 68 chr12 29219782 29220051 -114566404 - L1MEc LINE L1 -4192 2204 1958 2113 101 28 0 chr12 29220051 29220337 -114566118 - AluSc SINE Alu -6 303 10 627 261 33 68 chr12 29220337 29220550 -114565905 - L1MEc LINE L1 -4438 1958 1739 1431 176 17 0 chr12 29220568 29220807 -114565648 + MER2 DNA MER2_type 1 243 -102 2917 176 68 23 chr12 29220810 29221423 -114565032 - LTR9B LTR ERV1 0 644 4 1223 177 14 23 chr12 29221426 29221646 -114564809 - HUERS-P3 LTR ERV1 -1 8918 8701 336 143 16 16 chr12 29221756 29221819 -114564636 - LTR9 LTR ERV1 -549 63 1 296 269 118 0 chr12 29221819 29221911 -114564544 + MER2 DNA MER2_type 243 345 0 417 301 49 21 chr12 29221912 29222198 -114564257 - L1MEc LINE L1 -4675 1721 1428 1797 288 80 54 chr12 29222206 29223475 -114562980 - L1MEc LINE L1 -5029 1367 63 523 55 96 0 chr12 29223475 29223548 -114562907 + MADE1 DNA Mariner 1 80 0 1797 288 80 54 chr12 29223548 29223568 -114562887 - L1MEc LINE L1 -6333 63 45 1801 215 46 63 chr12 29223615 29224043 -114562412 + LTR40a LTR ERVL 1 420 -99 2397 88 7 0 chr12 29224043 29224351 -114562104 - AluY SINE Alu -1 310 1 1801 215 46 63 chr12 29224351 29224447 -114562008 + LTR40a LTR ERVL 420 516 -3 328 294 201 22 chr12 29224516 29224700 -114561755 - MIR SINE MIR 0 262 46 2504 183 67 35 chr12 29225638 29226136 -114560319 + MLT2B3 LTR ERVL 1 519 -35 677 53 11 0 chr12 29226136 29226230 -114560225 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 2504 183 67 35 chr12 29226230 29226268 -114560187 + MLT2B3 LTR ERVL 519 554 0 384 252 103 9 chr12 29226996 29227103 -114559352 + MER34 LTR ERV1 410 526 -16 225 0 0 0 chr12 29227103 29227128 -114559327 + (A)n Simple_repeat Simple_repeat 1 25 0 1010 144 124 28 chr12 29227348 29227598 -114558857 - L1MB8 LINE L1 -197 5981 5708 310 266 147 18 chr12 29227820 29227929 -114558526 - MIR3 SINE MIR -1 207 85 1843 157 3 20 chr12 29228765 29229071 -114557384 - AluJo SINE Alu -11 301 1 22 35 0 0 chr12 29229522 29229551 -114556904 + AT_rich Low_complexity Low_complexity 1 29 0 400 274 109 70 chr12 29230259 29230489 -114555966 - HAL1 LINE L1 -77 2430 2192 384 22 0 0 chr12 29230499 29230544 -114555911 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 781 257 182 75 chr12 29230546 29231029 -114555426 + LTR67 LTR ERVL 19 553 -4 670 319 4 23 chr12 29231593 29231856 -114554599 - HAL1 LINE L1 -717 1790 1533 315 0 0 0 chr12 29233451 29233486 -114552969 + (A)n Simple_repeat Simple_repeat 1 35 0 184 309 31 52 chr12 29234266 29234363 -114552092 + MIR SINE MIR 83 177 -85 536 167 158 0 chr12 29234374 29234488 -114551967 - L1MC2 LINE L1 -11 6333 6202 242 337 11 11 chr12 29235420 29235509 -114550946 - MER5B DNA MER1_type -1 177 89 649 242 96 32 chr12 29235653 29235934 -114550521 + L1ME4a LINE L1 5620 5918 -203 1085 214 149 70 chr12 29236018 29236063 -114550392 - MLT2B1 LTR ERVL 0 520 480 536 106 11 0 chr12 29236063 29236157 -114550298 + (TA)n Simple_repeat Simple_repeat 1 95 0 1085 214 149 70 chr12 29236157 29236403 -114550052 - MLT2B1 LTR ERVL -40 480 255 408 71 0 0 chr12 29236403 29236459 -114549996 + (TG)n Simple_repeat Simple_repeat 1 56 0 1085 214 149 70 chr12 29236459 29236648 -114549807 - MLT2B1 LTR ERVL -265 255 1 24 0 0 0 chr12 29237380 29237404 -114549051 + AT_rich Low_complexity Low_complexity 1 24 0 1309 178 0 13 chr12 29238332 29238568 -114547887 - MER46A DNA MER2_type -3 233 1 5075 101 40 6 chr12 29238739 29239515 -114546940 - L1MA3 LINE L1 0 6305 5504 427 254 8 74 chr12 29240365 29240487 -114545968 + MIR SINE MIR 2 115 -147 1230 181 25 137 chr12 29240555 29240723 -114545732 + MLT1B LTR MaLR 1 99 -291 1983 133 3 17 chr12 29240723 29241025 -114545430 + AluSg SINE Alu 1 298 -12 1230 181 25 137 chr12 29241025 29241259 -114545196 + MLT1B LTR MaLR 99 358 -32 3570 168 31 31 chr12 29241259 29241960 -114544495 + MER44D DNA MER2_type 1 701 -4 700 169 11 0 chr12 29241960 29242086 -114544369 - L1MC/D LINE L1 -529 5783 5655 504 201 71 24 chr12 29244016 29244185 -114542270 + MER96B DNA MER1_type? 2 178 -239 286 180 0 0 chr12 29244466 29244516 -114541939 + MER96B DNA MER1_type? 193 242 -175 1972 106 0 46 chr12 29244769 29245072 -114541383 + AluSg SINE Alu 1 289 -21 5173 148 14 21 chr12 29245401 29246324 -114540131 + MER49 LTR ERV1 5 921 -2 1392 233 136 17 chr12 29246593 29247013 -114539442 - MLT1E LTR MaLR -2 591 122 1119 55 16 42 chr12 29247022 29247334 -114539121 + (TTTC)n Simple_repeat Simple_repeat 2 486 0 6678 198 5 50 chr12 29247530 29248586 -114537869 + L1PA15 LINE L1 3802 4904 -1261 2106 152 25 0 chr12 29248586 29248941 -114537514 + THE1B LTR MaLR 1 364 0 6678 198 5 50 chr12 29248941 29250128 -114536327 + L1PA15 LINE L1 4904 6004 -161 2185 115 3 0 chr12 29250128 29250433 -114536022 + AluSp SINE Alu 6 311 -2 6678 198 5 50 chr12 29250433 29250584 -114535871 + L1PA15 LINE L1 6004 6160 -5 721 276 140 5 chr12 29250586 29251028 -114535427 + L1M4 LINE L1 2949 3450 -2696 1160 259 11 32 chr12 29251029 29251113 -114535342 + L1MCc LINE L1 18 102 -6321 207 0 0 0 chr12 29251113 29251136 -114535319 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1160 259 11 32 chr12 29251136 29251422 -114535033 + L1MCc LINE L1 102 380 -6043 2101 109 0 33 chr12 29251422 29251725 -114534730 - AluSq SINE Alu 0 313 21 5650 231 47 51 chr12 29251725 29251827 -114534628 - L1MC/D LINE L1 -592 5582 5481 2252 126 0 0 chr12 29251827 29252137 -114534318 - AluSx SINE Alu -2 310 1 5650 231 47 51 chr12 29252137 29254366 -114532089 - L1MC/D LINE L1 -693 5481 3267 513 353 140 25 chr12 29254393 29255022 -114531433 + L2 LINE L2 2031 2731 -583 191 267 10 69 chr12 29255504 29255605 -114530850 - L2 LINE L2 -251 3021 2927 591 112 0 0 chr12 29256298 29256387 -114530068 + (TCTA)n Simple_repeat Simple_repeat 1 89 0 503 248 9 0 chr12 29256600 29256709 -114529746 - MER81 DNA DNA -4 110 1 326 0 74 0 chr12 29257160 29257214 -114529241 + (TA)n Simple_repeat Simple_repeat 1 58 0 474 233 134 78 chr12 29257841 29257956 -114528499 - MIR SINE MIR -2 260 153 2390 80 0 10 chr12 29257956 29258270 -114528185 - AluY SINE Alu 0 311 1 474 233 134 78 chr12 29258270 29258386 -114528069 - MIR SINE MIR -109 153 16 239 316 63 0 chr12 29258511 29258590 -114527865 - L2 LINE L2 -3 3310 3227 415 237 29 36 chr12 29259585 29259724 -114526731 + L1MCc LINE L1 762 899 -6223 1227 197 36 64 chr12 29259764 29260094 -114526361 - MLT2D LTR ERVL -2 412 92 1199 231 71 47 chr12 29260120 29260509 -114525946 + L1MCc LINE L1 2376 2754 -4187 7770 20 0 0 chr12 29260509 29261536 -114524919 - L1PA3 LINE L1 -1 6154 5128 1199 231 71 47 chr12 29261536 29261628 -114524827 + L1MCc LINE L1 2754 2842 -4099 1797 176 14 43 chr12 29261628 29261762 -114524693 - L1PA15 LINE L1 0 6165 6029 1859 174 0 25 chr12 29261762 29262078 -114524377 - AluSx SINE Alu -4 308 1 1797 176 14 43 chr12 29262078 29262290 -114524165 - L1PA15 LINE L1 -136 6029 5829 1199 231 71 47 chr12 29262290 29262659 -114523796 + L1MCc LINE L1 2842 3419 -3522 372 220 110 8 chr12 29262714 29262832 -114523623 + L1MCc LINE L1 3516 3645 -3296 890 165 100 39 chr12 29262835 29262874 -114523581 + L1MCc LINE L1 3760 3795 -3146 1357 224 29 45 chr12 29262874 29263254 -114523201 - MLT1A2 LTR MaLR 0 374 1 890 165 100 39 chr12 29263254 29263493 -114522962 + L1MCc LINE L1 3795 4055 -2886 228 35 0 0 chr12 29263632 29263661 -114522794 - L1P LINE L1 -971 5175 5147 5386 151 13 6 chr12 29263662 29264531 -114521924 - Tigger1 DNA MER2_type -1543 875 1 402 192 29 0 chr12 29264531 29264635 -114521820 + L1MC5 LINE L1 7679 7785 -176 201 328 52 26 chr12 29264709 29264825 -114521630 + L2 LINE L2 2932 3050 -222 879 305 34 36 chr12 29264951 29265345 -114521110 + LTR16A1 LTR ERVL 83 457 0 275 365 93 0 chr12 29265505 29265612 -114520843 + L2 LINE L2 3156 3272 0 2128 120 0 37 chr12 29265630 29265954 -114520501 - AluSx SINE Alu 0 312 1 25 0 0 0 chr12 29267441 29267466 -114518989 + AT_rich Low_complexity Low_complexity 1 25 0 950 148 31 0 chr12 29267504 29267666 -114518789 + L1MC3 LINE L1 6279 6445 -1340 1195 270 87 37 chr12 29267748 29268229 -114518226 - LTR33 LTR ERVL -16 505 1 353 385 62 5 chr12 29269471 29269666 -114516789 + MIR SINE MIR 2 207 -55 411 319 51 7 chr12 29270368 29270506 -114515949 + MER5B DNA MER1_type 24 167 -11 11022 140 28 60 chr12 29270539 29272395 -114514060 + Tigger1 DNA MER2_type 1 1778 -640 2262 84 3 7 chr12 29272395 29272693 -114513762 + AluY SINE Alu 12 308 -3 11022 140 28 60 chr12 29272693 29273014 -114513441 + Tigger1 DNA MER2_type 1778 2108 -310 512 366 0 0 chr12 29273242 29273373 -114513082 + T-rich Low_complexity Low_complexity 1 131 0 292 289 0 11 chr12 29273372 29273462 -114512993 + C-rich Low_complexity Low_complexity 3 91 0 * 218 179 0 0 chr12 29273779 29273818 -114512637 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 273 288 129 30 chr12 29273837 29273969 -114512486 + MIR SINE MIR 84 228 -34 670 154 31 154 chr12 29274158 29274245 -114512210 - MER3 DNA MER1_type -9 200 104 638 216 0 0 chr12 29274245 29274370 -114512085 + FLAM_C SINE Alu 2 126 -7 670 154 31 154 chr12 29274370 29274509 -114511946 - MER3 DNA MER1_type -105 104 2 24 0 0 0 chr12 29275507 29275531 -114510924 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr12 29275830 29275859 -114510596 + AT_rich Low_complexity Low_complexity 1 29 0 1019 39 13 32 chr12 29277780 29277935 -114508520 + (TTTC)n Simple_repeat Simple_repeat 1 152 0 21 57 0 0 chr12 29278514 29278549 -114507906 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr12 29278823 29278865 -114507590 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr12 29279001 29279036 -114507419 + AT_rich Low_complexity Low_complexity 1 35 0 314 343 69 23 chr12 29279230 29279446 -114507009 - L3b LINE CR1 -115 1468 1243 265 344 40 32 chr12 29279654 29279779 -114506676 + MIR3 SINE MIR 42 167 -41 186 43 0 0 chr12 29279982 29280005 -114506450 + (A)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr12 29280071 29280096 -114506359 + AT_rich Low_complexity Low_complexity 1 25 0 42 81 0 0 chr12 29280102 29280176 -114506279 + GC_rich Low_complexity Low_complexity 1 74 0 198 0 0 0 chr12 29280197 29280219 -114506236 + (A)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr12 29280316 29280341 -114506114 + AT_rich Low_complexity Low_complexity 1 25 0 309 204 0 120 chr12 29280667 29280775 -114505680 - MLT1L LTR MaLR -328 287 193 1082 246 3 42 chr12 29280959 29281244 -114505211 + MER93b LTR ERV1 98 371 -2 1813 182 30 43 chr12 29281285 29281680 -114504775 + MLT1B LTR MaLR 1 390 0 319 337 34 29 chr12 29281690 29281865 -114504590 + MER20B DNA MER1_type 2 177 -606 505 278 62 0 chr12 29282982 29283223 -114503232 - L1MEc LINE L1 -4102 2294 2039 570 102 278 9 chr12 29283231 29283339 -114503116 - L1MA3 LINE L1 -1 6304 6168 3005 242 61 18 chr12 29283513 29284844 -114501611 - L1ME1 LINE L1 -27 6139 4767 1879 278 98 22 chr12 29284840 29285828 -114500627 - L1MEc LINE L1 -4524 1872 810 * 3583 168 41 10 chr12 29285861 29286540 -114499915 - L1MC3 LINE L1 -21 7764 7065 2663 257 20 14 chr12 29286580 29287289 -114499166 - L1MEc LINE L1 -5652 744 32 2245 149 142 0 chr12 29289945 29290360 -114496095 - MER101 LTR ERV1 0 474 1 283 339 103 0 chr12 29290802 29290976 -114495479 - MIR SINE MIR -65 197 6 2313 176 83 16 chr12 29292814 29293365 -114493090 - Charlie1a DNA MER1_type 0 1455 868 1706 249 55 31 chr12 29293421 29293971 -114492484 - Charlie1a DNA MER1_type -892 563 1 191 284 64 64 chr12 29294311 29294420 -114492035 + L3 LINE CR1 1447 1555 -22 180 0 0 0 chr12 29295042 29295062 -114491393 + (CATATA)n Simple_repeat Simple_repeat 5 24 0 28 0 0 0 chr12 29295467 29295495 -114490960 + AT_rich Low_complexity Low_complexity 1 28 0 5087 79 6 0 chr12 29296734 29297406 -114489049 + L1PA7 LINE L1 5479 6154 0 1504 109 73 44 chr12 29298038 29298170 -114488285 - Tigger2 DNA MER2_type -102 2616 2489 2328 117 0 0 chr12 29298170 29298477 -114487978 + AluSx SINE Alu 1 307 -5 1504 109 73 44 chr12 29298477 29298619 -114487836 - Tigger2 DNA MER2_type -229 2489 2334 677 207 0 0 chr12 29298646 29298757 -114487698 + Tigger2 DNA MER2_type 2592 2702 -16 360 0 0 0 chr12 29298757 29298797 -114487658 + (CA)n Simple_repeat Simple_repeat 1 40 0 24 0 0 0 chr12 29298797 29298821 -114487634 + AT_rich Low_complexity Low_complexity 1 24 0 292 320 72 40 chr12 29299725 29299850 -114486605 - L2 LINE L2 -1 3271 3143 24 32 0 0 chr12 29300328 29300359 -114486096 + AT_rich Low_complexity Low_complexity 1 31 0 294 356 111 19 chr12 29300377 29300593 -114485862 + MIR SINE MIR 20 255 -7 278 283 87 51 chr12 29300787 29300925 -114485530 - MIR SINE MIR -63 145 3 1805 159 12 77 chr12 29302118 29302532 -114483923 + MLT1B LTR MaLR 4 390 0 662 303 45 5 chr12 29302539 29302760 -114483695 - MIR SINE MIR -13 249 20 1804 141 25 0 chr12 29303891 29304191 -114482264 + AluSx SINE Alu 1 307 0 279 0 0 0 chr12 29305158 29305189 -114481266 + (T)n Simple_repeat Simple_repeat 1 31 0 29 0 0 0 chr12 29305252 29305281 -114481174 + AT_rich Low_complexity Low_complexity 1 29 0 670 134 0 0 chr12 29306651 29306782 -114479673 + FLAM_C SINE Alu 21 151 0 374 0 22 0 chr12 29306789 29306835 -114479620 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 1358 226 13 16 chr12 29306835 29307141 -114479314 + AluJo SINE Alu 3 307 -5 1067 152 6 0 chr12 29308415 29308580 -114477875 - AluJb SINE Alu -60 252 87 6395 32 3 0 chr12 29309518 29310854 -114475601 - L1PA3 LINE L1 -141 6014 4674 1420 179 0 82 chr12 29311228 29311418 -114475037 - AluJb SINE Alu 0 312 161 360 0 0 0 chr12 29311418 29311458 -114474997 + (TA)n Simple_repeat Simple_repeat 2 41 0 1420 179 0 82 chr12 29311458 29311607 -114474848 - AluJb SINE Alu -151 161 1 23 33 0 0 chr12 29312779 29312809 -114473646 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr12 29313330 29313360 -114473095 + AT_rich Low_complexity Low_complexity 1 30 0 396 321 34 83 chr12 29314693 29314958 -114471497 + MIR SINE MIR 10 261 -1 418 137 0 27 chr12 29315375 29315448 -114471007 - THE1C LTR MaLR 0 375 305 895 180 47 33 chr12 29315552 29315763 -114470692 - L1MA7 LINE L1 -212 6079 5866 502 265 74 6 chr12 29315778 29315940 -114470515 - MIR SINE MIR -39 223 51 231 250 0 19 chr12 29316004 29316056 -114470399 - MER45 DNA AcHobo 0 1581 1531 22 56 0 0 chr12 29316454 29316490 -114469965 + AT_rich Low_complexity Low_complexity 1 36 0 2370 165 70 6 chr12 29317076 29317573 -114468882 + L1PB4 LINE L1 5628 6156 0 197 253 0 84 chr12 29317779 29317862 -114468593 + MIR SINE MIR 36 111 -151 3676 148 34 14 chr12 29318280 29318416 -114468039 + L1MB3 LINE L1 5463 5595 -588 2490 57 0 3 chr12 29318416 29318716 -114467739 + AluY SINE Alu 1 299 -12 3676 148 34 14 chr12 29318716 29319282 -114467173 + L1MB3 LINE L1 5595 6179 -4 2278 106 137 8 chr12 29322328 29322707 -114463748 - MSTA LTR MaLR 0 428 1 3988 127 55 13 chr12 29324443 29325154 -114461301 - L1MC1 LINE L1 0 6333 5593 259 247 0 45 chr12 29325155 29325244 -114461211 - L1M4 LINE L1 -1834 4312 4228 536 345 42 71 chr12 29325244 29325580 -114460875 - L2 LINE L2 -28 3244 2919 751 275 170 31 chr12 29325615 29325997 -114460458 + LTR16A LTR ERVL 1 435 -15 1246 266 141 16 chr12 29326011 29326459 -114459996 + HERV16 LTR ERVL 2 505 -4491 1229 311 45 13 chr12 29326456 29326926 -114459529 + HERV16 LTR ERVL 1084 1568 -3428 * 689 255 27 27 chr12 29326997 29327165 -114459290 + HERV16 LTR ERVL 1719 1889 -3107 1422 143 124 70 chr12 29327165 29327521 -114458934 + THE1C LTR MaLR 1 375 0 689 255 27 27 chr12 29327521 29327540 -114458915 + HERV16 LTR ERVL 1888 1906 -3090 403 241 0 0 chr12 29327668 29327747 -114458708 + MER58B DNA MER1_type 261 339 -2 714 310 47 40 chr12 29327747 29328044 -114458411 + HERV16 LTR ERVL 2319 2617 -2379 1517 275 33 26 chr12 29328122 29328613 -114457842 + MLT1J LTR MaLR 18 511 0 187 250 36 80 chr12 29328629 29328741 -114457714 - L2 LINE L2 -919 2395 2289 534 113 0 0 chr12 29330154 29330234 -114456221 - AluSp/q SINE Alu -14 299 220 989 233 88 91 chr12 29330234 29330658 -114455797 + MLT1G3 LTR MaLR 138 555 0 772 308 47 44 chr12 29330663 29331280 -114455175 - L1M4 LINE L1 -2051 4095 3477 5186 153 20 34 chr12 29331596 29331920 -114454535 - MER54A LTR ERVL 0 901 574 2538 122 25 37 chr12 29331920 29332353 -114454102 - MSTA LTR MaLR 0 428 1 5186 153 20 34 chr12 29332353 29332942 -114453513 - MER54A LTR ERVL -327 574 1 2094 147 0 6 chr12 29333013 29333327 -114453128 - AluSx SINE Alu 0 312 1 2913 160 51 74 chr12 29333327 29334164 -114452291 - MER57B-int LTR ERV1 -3384 4153 3336 364 107 36 0 chr12 29334141 29334197 -114452258 - MER57B-int LTR ERV1 -3722 2224 2167 * 730 136 0 8 chr12 29334193 29334311 -114452144 - MER57B-int LTR ERV1 -3929 2017 1901 572 176 14 47 chr12 29334314 29334462 -114451993 - MER57B-int LTR ERV1 -5183 2354 2212 * 4699 148 17 16 chr12 29334446 29335805 -114450650 - MER57B-int LTR ERV1 -5061 885 1 2762 114 21 7 chr12 29335805 29336233 -114450222 - MER57B LTR ERV1 0 434 1 271 278 56 69 chr12 29336428 29336572 -114449883 - L2 LINE L2 -4 3309 3168 3039 192 82 2 chr12 29336573 29337161 -114449294 + ERVL-B1 LTR ERVL 559 1193 -4571 * 7487 160 60 14 chr12 29337159 29338485 -114447970 + ERVL-B1 LTR ERVL 4359 5745 -19 1676 238 46 54 chr12 29338486 29339008 -114447447 + MLT2B1 LTR ERVL 1 518 -2 356 243 56 0 chr12 29340551 29340655 -114445800 + L1ME LINE L1 5723 5819 -347 2970 217 103 13 chr12 29342067 29342293 -114444162 - L1ME1 LINE L1 -32 6203 5999 399 73 0 0 chr12 29342293 29342348 -114444107 + (TG)n Simple_repeat Simple_repeat 2 56 0 2970 217 103 13 chr12 29342348 29343024 -114443431 - L1ME1 LINE L1 -236 5999 5219 292 62 25 173 chr12 29343018 29343066 -114443389 - L1MB3 LINE L1 -2 6181 6148 * 2190 109 0 7 chr12 29343066 29343370 -114443085 - AluY SINE Alu -9 302 1 292 62 25 173 chr12 29343370 29343402 -114443053 - L1MB3 LINE L1 -35 6148 6113 1355 259 76 15 chr12 29343414 29343862 -114442593 - L1ME1 LINE L1 -3686 2529 2042 207 0 0 0 chr12 29343862 29343885 -114442570 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1355 259 76 15 chr12 29343885 29344090 -114442365 - L1ME1 LINE L1 -4173 2042 1851 542 304 19 5 chr12 29344094 29344301 -114442154 - L1ME1 LINE L1 -4578 1818 1609 213 277 0 0 chr12 29345682 29345729 -114440726 - L2 LINE L2 -2 3311 3265 955 325 92 43 chr12 29345900 29346739 -114439716 - L2 LINE L2 -237 3035 2142 765 162 95 62 chr12 29346739 29346864 -114439591 + AluJo SINE Alu 29 163 -149 2531 106 6 3 chr12 29346864 29347224 -114439231 + THE1B LTR MaLR 1 361 -3 765 162 95 62 chr12 29347224 29347277 -114439178 + AluJo SINE Alu 163 213 -99 573 74 42 0 chr12 29347313 29347408 -114439047 + GA-rich Low_complexity Low_complexity 1 99 0 278 323 122 44 chr12 29347482 29347801 -114438654 - L2 LINE L2 -1217 2097 1754 420 153 0 31 chr12 29347808 29347906 -114438549 + CT-rich Low_complexity Low_complexity 3 97 0 2382 96 0 3 chr12 29348301 29348614 -114437841 - AluSx SINE Alu 0 312 1 2458 224 29 80 chr12 29349352 29350082 -114436373 - LTR8 LTR ERV1 0 691 2 4248 174 46 43 chr12 29350606 29352287 -114434168 - L1MA9 LINE L1 -40 6272 4590 924 166 43 0 chr12 29352306 29352469 -114433986 - L1PB4 LINE L1 -13 6143 5974 306 197 0 0 chr12 29352471 29352532 -114433923 - L1MC4 LINE L1 -1346 6696 6636 4788 37 0 0 chr12 29352535 29353096 -114433359 - L1PA5 LINE L1 -14 6140 5580 3977 152 25 6 chr12 29353098 29354130 -114432325 - L1PB4 LINE L1 -174 5982 4934 216 310 161 29 chr12 29354909 29355083 -114431372 - L2 LINE L2 -564 2750 2554 23 0 0 0 chr12 29356309 29356332 -114430123 + AT_rich Low_complexity Low_complexity 1 23 0 1362 164 96 14 chr12 29356716 29357148 -114429307 + LTR54 LTR ERV1 3 497 -1 29 0 0 0 chr12 29358774 29358803 -114427652 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr12 29358810 29358838 -114427617 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 24 67 0 0 chr12 29358905 29358950 -114427505 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr12 29358975 29359000 -114427455 + AT_rich Low_complexity Low_complexity 1 25 0 28 61 0 0 chr12 29359830 29359879 -114426576 + AT_rich Low_complexity Low_complexity 1 49 0 30 27 0 0 chr12 29360525 29360562 -114425893 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr12 29361521 29361555 -114424900 + AT_rich Low_complexity Low_complexity 1 34 0 2364 42 3 7 chr12 29361995 29362282 -114424173 + AluY SINE Alu 1 286 -25 37 0 0 0 chr12 29362282 29362319 -114424136 + AT_rich Low_complexity Low_complexity 1 37 0 203 275 72 29 chr12 29362368 29362437 -114424018 - L2 LINE L2 0 3313 3242 571 233 54 83 chr12 29362550 29362790 -114423665 + L1ME3A LINE L1 5928 6160 -10 301 327 163 42 chr12 29362887 29363367 -114423088 + L2 LINE L2 1826 2363 -951 2279 104 0 16 chr12 29364422 29364739 -114421716 + AluSq SINE Alu 1 312 -1 260 339 81 5 chr12 29364987 29365173 -114421282 - L1ME LINE L1 -393 5728 5529 2072 132 0 0 chr12 29365191 29365479 -114420976 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr12 29365482 29365507 -114420948 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 305 327 42 24 chr12 29365632 29365797 -114420658 - HAL1b LINE L1 -554 794 627 292 306 12 0 chr12 29366022 29366107 -114420348 - HAL1b LINE L1 -758 590 505 798 196 14 0 chr12 29366353 29366496 -114419959 + FRAM SINE Alu 11 155 -21 23 33 0 0 chr12 29367122 29367152 -114419303 + AT_rich Low_complexity Low_complexity 1 30 0 762 184 8 0 chr12 29367181 29367306 -114419149 + AluJo/FLAM SINE Alu 5 130 -172 1441 186 10 44 chr12 29367307 29367603 -114418852 + AluJo SINE Alu 1 286 -26 202 146 24 0 chr12 29367610 29367651 -114418804 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 21 71 0 0 chr12 29367994 29368036 -114418419 + AT_rich Low_complexity Low_complexity 1 42 0 400 256 8 45 chr12 29368700 29368833 -114417622 + L1M3 LINE L1 4527 4654 -1492 669 133 0 19 chr12 29368834 29368971 -114417484 + FRAM SINE Alu 58 176 0 3033 176 32 23 chr12 29368971 29369288 -114417167 + L1M3 LINE L1 4648 4961 -1219 1490 158 93 91 chr12 29369288 29369719 -114416736 + MSTB1 LTR MaLR 1 432 0 3033 176 32 23 chr12 29369719 29370254 -114416201 + L1M3 LINE L1 4961 5508 -672 231 286 91 0 chr12 29370484 29370561 -114415894 - MER91C DNA MER1_type -34 106 23 21 0 0 0 chr12 29370833 29370854 -114415601 + AT_rich Low_complexity Low_complexity 1 21 0 1691 167 65 3 chr12 29370856 29371149 -114415306 + AluSx SINE Alu 1 311 -1 3723 185 101 61 chr12 29371349 29372265 -114414190 + Tigger3b DNA MER2_type 1 977 -2051 2143 122 0 3 chr12 29372265 29372559 -114413896 - AluSx SINE Alu -19 293 1 3723 185 101 61 chr12 29372559 29372825 -114413630 + Tigger3b DNA MER2_type 977 1231 0 303 223 68 10 chr12 29373842 29373945 -114412510 - L1ME4a LINE L1 -16 6105 5997 313 301 124 13 chr12 29374377 29374530 -114411925 + MIR SINE MIR 90 259 -3 30 27 0 0 chr12 29376234 29376271 -114410184 + AT_rich Low_complexity Low_complexity 1 37 0 1753 117 23 0 chr12 29377897 29378153 -114408302 - AluSg SINE Alu -4 306 45 998 171 6 0 chr12 29378400 29378558 -114407897 + FRAM SINE Alu 1 158 -18 202 262 0 95 chr12 29378559 29378643 -114407812 + L2 LINE L2 3194 3269 -3 212 0 36 0 chr12 29378703 29378731 -114407724 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 333 167 0 0 chr12 29380147 29380219 -114406236 - AluJo SINE Alu 0 306 235 832 226 6 0 chr12 29380224 29380392 -114406063 - AluJo SINE Alu -143 169 1 687 142 61 68 chr12 29380392 29380540 -114405915 - L1MC2 LINE L1 -13 6331 6185 264 221 263 11 chr12 29380540 29380635 -114405820 + MER34 LTR ERV1 1 119 -423 1364 196 70 42 chr12 29380642 29381062 -114405393 + MER39 LTR ERV1 80 566 -19 492 206 0 56 chr12 29381712 29381819 -114404636 + FRAM SINE Alu 1 101 -75 242 54 0 27 chr12 29381836 29381873 -114404582 + (GAA)n Simple_repeat Simple_repeat 2 37 0 328 295 0 18 chr12 29382282 29382394 -114404061 + MIR SINE MIR 86 195 -67 278 357 140 0 chr12 29382440 29382583 -114403872 + MIR SINE MIR 36 198 -64 738 218 124 25 chr12 29382655 29382857 -114403598 - MIR SINE MIR -11 251 30 211 370 76 0 chr12 29383613 29383705 -114402750 + MIR SINE MIR 50 148 -114 360 237 5 106 chr12 29383775 29383973 -114402482 + MIR SINE MIR 5 179 -63 269 277 31 0 chr12 29383977 29384042 -114402413 - MIR SINE MIR -82 180 114 196 259 0 17 chr12 29384228 29384286 -114402169 + MIR3 SINE MIR 142 198 -10 491 259 138 52 chr12 29385546 29385778 -114400677 + MIR SINE MIR 11 262 0 629 249 94 11 chr12 29386123 29386304 -114400151 + MIR SINE MIR 67 262 0 380 280 72 32 chr12 29386319 29386444 -114400011 - MIR3 SINE MIR -64 144 15 883 290 39 24 chr12 29387496 29387751 -114398704 + MIR SINE MIR 4 262 0 248 319 44 26 chr12 29387850 29387963 -114398492 - L2 LINE L2 0 3313 3199 288 290 214 15 chr12 29388071 29388202 -114398253 - MIR SINE MIR -86 176 20 434 319 19 19 chr12 29388863 29389020 -114397435 + L2 LINE L2 2293 2449 -865 457 294 18 31 chr12 29389924 29390087 -114396368 + MIR SINE MIR 76 236 -26 381 273 84 44 chr12 29390266 29390515 -114395940 - HAL1 LINE L1 -10 2497 2239 405 0 0 0 chr12 29390516 29390561 -114395894 + (CA)n Simple_repeat Simple_repeat 2 46 0 276 254 52 75 chr12 29390590 29390700 -114395755 - HAL1 LINE L1 -349 2158 2054 1639 184 13 67 chr12 29390700 29391086 -114395369 - MLT1A1 LTR MaLR 0 365 1 276 254 52 75 chr12 29391086 29391188 -114395267 - HAL1 LINE L1 -453 2054 1951 372 288 120 0 chr12 29391196 29391321 -114395134 - HAL1 LINE L1 -2367 140 1 1791 187 44 6 chr12 29391804 29392147 -114394308 - MLT1A1 LTR MaLR 0 365 10 2194 110 7 0 chr12 29392396 29392687 -114393768 - AluSx SINE Alu -19 293 1 180 256 23 0 chr12 29393681 29393724 -114392731 - L2 LINE L2 -9 3304 3261 54 49 0 0 chr12 29393813 29393895 -114392560 + AT_rich Low_complexity Low_complexity 1 82 0 287 285 26 20 chr12 29394340 29394510 -114391945 + L1M4 LINE L1 5256 5425 -746 210 271 0 0 chr12 29395763 29395811 -114390644 + T-rich Low_complexity Low_complexity 1 48 0 258 233 17 26 chr12 29395823 29395939 -114390516 + T-rich Low_complexity Low_complexity 3 117 0 8933 103 50 5 chr12 29396075 29397180 -114389275 - MER57-int LTR ERV1 -1905 5632 4447 2281 83 0 21 chr12 29397180 29397491 -114388964 - AluY SINE Alu 0 305 1 8933 103 50 5 chr12 29397491 29397797 -114388658 - MER57-int LTR ERV1 -3090 4447 4156 180 0 0 0 chr12 29397819 29397839 -114388616 + (TTC)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr12 29397957 29397978 -114388477 + GC_rich Low_complexity Low_complexity 1 21 0 201 319 0 0 chr12 29398014 29398083 -114388372 + C-rich Low_complexity Low_complexity 2 70 0 5079 112 12 1 chr12 29398911 29399700 -114386755 + L1PA16 LINE L1 5217 6013 -153 291 349 0 14 chr12 29399709 29399855 -114386600 + CT-rich Low_complexity Low_complexity 2 145 0 636 191 24 0 chr12 29400035 29400161 -114386294 + L1PA16 LINE L1 6028 6156 -10 416 300 100 43 chr12 29401021 29401231 -114385224 - MLT1K LTR MaLR -6 582 361 228 286 92 20 chr12 29401407 29401505 -114384950 - MLT1L LTR MaLR -424 191 87 1548 142 68 84 chr12 29401647 29402028 -114384427 + THE1C LTR MaLR 1 375 0 228 324 0 0 chr12 29402095 29402197 -114384258 + A-rich Low_complexity Low_complexity 1 102 0 2180 103 7 0 chr12 29402243 29402534 -114383921 + AluSp SINE Alu 1 293 -20 313 219 9 76 chr12 29404238 29404343 -114382112 + LTR52 LTR ERVL 12 109 -312 1215 253 30 10 chr12 29404371 29404675 -114381780 + LTR52 LTR ERVL 112 421 0 2004 175 31 0 chr12 29404714 29405068 -114381387 + MLT1A1 LTR MaLR 1 365 0 910 181 19 0 chr12 29405183 29405343 -114381112 - AluJb SINE Alu -14 298 136 215 352 107 67 chr12 29405382 29405635 -114380820 + L2 LINE L2 2553 2815 -499 236 368 48 72 chr12 29405763 29406013 -114380442 + L2 LINE L2 2946 3189 -83 1450 143 16 6 chr12 29406155 29406656 -114379799 + L1MB8 LINE L1 5511 6117 -61 304 249 109 61 chr12 29406810 29406975 -114379480 + MIR SINE MIR 90 262 0 201 300 12 62 chr12 29407130 29407210 -114379245 - L2 LINE L2 -9 3263 3188 433 326 0 23 chr12 29407607 29407739 -114378716 + L2 LINE L2 3182 3310 -3 202 286 0 16 chr12 29408133 29408196 -114378259 - L2 LINE L2 -3 3269 3208 332 319 113 53 chr12 29408439 29408925 -114377530 - L1M2 LINE L1 -5802 1047 533 285 224 72 53 chr12 29410867 29410887 -114375568 - L1MA10 LINE L1 0 6334 6315 2994 195 76 37 chr12 29410887 29411436 -114375019 - L1ME1 LINE L1 -4 6660 6134 2292 111 0 0 chr12 29411436 29411743 -114374712 + AluSc SINE Alu 1 307 -2 2994 195 76 37 chr12 29411743 29412358 -114374097 - L1ME1 LINE L1 -530 6134 5445 195 42 0 0 chr12 29412358 29412382 -114374073 + (TC)n Simple_repeat Simple_repeat 2 25 0 2994 195 76 37 chr12 29412382 29412442 -114374013 - L1ME1 LINE L1 -1219 5445 5389 2203 105 0 0 chr12 29412444 29412740 -114373715 - LTR12 LTR ERV1 0 714 419 4578 104 77 65 chr12 29412740 29413556 -114372899 - LTR12 LTR ERV1 0 826 1 1740 260 87 55 chr12 29413558 29413950 -114372505 - L1ME1 LINE L1 -1247 5397 5019 1724 173 7 0 chr12 29413950 29414234 -114372221 + AluJb SINE Alu 13 298 -14 1740 260 87 55 chr12 29414234 29414800 -114371655 - L1ME1 LINE L1 -1625 5019 4409 308 289 101 0 chr12 29414792 29414941 -114371514 - L1ME4a LINE L1 -3 6118 5955 * 188 238 63 16 chr12 29415348 29415411 -114371044 - MIR3 SINE MIR -6 202 137 389 336 78 5 chr12 29415551 29415768 -114370687 - MIR SINE MIR -29 233 1 23 54 0 0 chr12 29415795 29415832 -114370623 + AT_rich Low_complexity Low_complexity 1 37 0 6620 212 70 71 chr12 29416766 29417036 -114369419 - L1ME1 LINE L1 -3896 2748 2479 1665 164 38 7 chr12 29417036 29417328 -114369127 - AluJo SINE Alu -11 301 1 6620 212 70 71 chr12 29417328 29418394 -114368061 - L1ME1 LINE L1 -4165 2479 1413 207 0 0 0 chr12 29418394 29418417 -114368038 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6569 77 29 22 chr12 29418417 29420119 -114366336 - SVA Other Other -590 1368 71 243 0 0 0 chr12 29420119 29420146 -114366309 + (GGGAGA)n Simple_repeat Simple_repeat 1 27 0 6620 212 70 71 chr12 29420146 29421492 -114364963 - L1ME1 LINE L1 -5228 1416 2 2431 147 51 2 chr12 29423579 29423993 -114362462 - MER57B LTR ERV1 0 434 1 1026 110 8 30 chr12 29423994 29424218 -114362237 - MER57B-int LTR ERV1 -1 7536 7279 713 123 23 31 chr12 29424218 29424348 -114362107 - LTR54B LTR ERV1 -367 131 3 22703 127 48 32 chr12 29424348 29426910 -114359545 - MER57B-int LTR ERV1 -389 7148 4627 2246 83 0 21 chr12 29426910 29427221 -114359234 - AluY SINE Alu 0 305 1 22703 127 48 32 chr12 29427221 29427550 -114358905 - MER57B-int LTR ERV1 -2910 4627 4305 1827 127 55 0 chr12 29427550 29427846 -114358609 - AluSq SINE Alu 0 311 1 22703 127 48 32 chr12 29427846 29430324 -114356131 - MER57B-int LTR ERV1 -3232 4305 1 2750 114 21 7 chr12 29430324 29430752 -114355703 - MER57B LTR ERV1 0 434 1 277 278 56 69 chr12 29430947 29431091 -114355364 - L2 LINE L2 -4 3309 3168 3028 192 82 2 chr12 29431092 29431680 -114354775 + ERVL-B1 LTR ERVL 559 1193 -4571 * 7500 160 60 14 chr12 29431678 29433004 -114353451 + ERVL-B1 LTR ERVL 4359 5745 -19 1674 238 46 54 chr12 29433005 29433527 -114352928 + MLT2B1 LTR ERVL 1 518 -2 367 243 56 0 chr12 29435069 29435173 -114351282 + L1ME LINE L1 5723 5819 -347 3016 217 103 13 chr12 29436585 29436811 -114349644 - L1ME1 LINE L1 -32 6203 5999 399 73 0 0 chr12 29436811 29436866 -114349589 + (TG)n Simple_repeat Simple_repeat 2 56 0 3016 217 103 13 chr12 29436866 29437542 -114348913 - L1ME1 LINE L1 -236 5999 5219 299 62 25 173 chr12 29437536 29437584 -114348871 - L1MB3 LINE L1 -2 6181 6148 * 2286 92 0 7 chr12 29437584 29437888 -114348567 - AluY SINE Alu -9 302 1 299 62 25 173 chr12 29437888 29437920 -114348535 - L1MB3 LINE L1 -35 6148 6113 1414 259 76 15 chr12 29437932 29438380 -114348075 - L1ME1 LINE L1 -3686 2529 2042 207 0 0 0 chr12 29438380 29438403 -114348052 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1414 259 76 15 chr12 29438403 29438608 -114347847 - L1ME1 LINE L1 -4173 2042 1851 3179 286 87 18 chr12 29438612 29440170 -114346285 - L1ME1 LINE L1 -4578 1818 153 219 88 0 0 chr12 29440405 29440439 -114346016 + (TGG)n Simple_repeat Simple_repeat 2 35 0 391 340 31 19 chr12 29443042 29443204 -114343251 - MIR3 SINE MIR -29 179 16 2147 100 0 20 chr12 29443573 29443872 -114342583 - AluSq SINE Alu -20 293 1 380 328 29 23 chr12 29443877 29444048 -114342407 + MLT1L LTR MaLR 46 217 -398 395 232 86 55 chr12 29444062 29444278 -114342177 + MLT1L LTR MaLR 345 605 0 2999 143 33 133 chr12 29444658 29445453 -114341002 - L1MC3 LINE L1 -9 7776 7062 299 350 137 6 chr12 29445958 29446141 -114340314 + MIR SINE MIR 56 262 0 208 386 68 11 chr12 29446480 29446568 -114339887 + L2 LINE L2 3128 3220 -52 467 310 130 5 chr12 29446610 29446826 -114339629 - L3 LINE CR1 -82 1495 1253 482 261 32 13 chr12 29446933 29447090 -114339365 - Charlie7 DNA MER1_type -5 2607 2448 432 312 304 11 chr12 29447410 29447769 -114338686 - L2 LINE L2 0 3313 2850 279 282 19 48 chr12 29447782 29447885 -114338570 - MLT1K LTR MaLR -290 298 199 1875 149 3 3 chr12 29448745 29449040 -114337415 - AluJb SINE Alu -17 295 1 231 204 0 37 chr12 29449961 29450015 -114336440 + LTR43 LTR ERV1 100 151 -451 1233 96 48 0 chr12 29450941 29451108 -114335347 + AluSg/x SINE Alu 128 302 -10 1009 218 31 60 chr12 29451194 29451511 -114334944 - L1ME2 LINE L1 -6 6158 5851 643 144 42 0 chr12 29452047 29452165 -114334290 - L1MB3 LINE L1 -31 6152 6030 461 217 57 0 chr12 29452989 29453095 -114333360 - MLT1G LTR MaLR -7 548 437 746 247 69 52 chr12 29453139 29453430 -114333025 - MLT1G LTR MaLR -292 298 3 24 32 0 0 chr12 29454486 29454517 -114331938 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr12 29454657 29454691 -114331764 + AT_rich Low_complexity Low_complexity 1 34 0 312 27 0 0 chr12 29455345 29455382 -114331073 + (CA)n Simple_repeat Simple_repeat 2 38 0 1958 197 64 37 chr12 29455397 29455884 -114330571 + MLT1D LTR MaLR 1 500 -5 515 276 103 76 chr12 29456239 29456952 -114329503 + L1MC4a LINE L1 5193 5826 -352 2119 124 3 3 chr12 29456953 29457251 -114329204 + AluSx SINE Alu 1 298 -14 238 364 68 0 chr12 29457519 29457637 -114328818 + L1ME LINE L1 5531 5656 -465 297 215 183 21 chr12 29458313 29458499 -114327956 - L1MCc LINE L1 -4887 1536 1321 2888 171 18 52 chr12 29458711 29459341 -114327114 - L1MD1 LINE L1 -314 5928 5321 427 226 0 0 chr12 29459345 29459429 -114327026 + L1M4 LINE L1 2676 2759 -3387 236 250 33 0 chr12 29459421 29459481 -114326974 - L1MD1 LINE L1 -2511 3635 3574 * 465 265 58 12 chr12 29459665 29459829 -114326626 - L1P4 LINE L1 -388 5773 5601 2191 112 3 6 chr12 29459831 29460143 -114326312 + AluSx SINE Alu 2 312 0 5138 153 20 34 chr12 29460214 29460803 -114325652 + MER54A LTR ERVL 1 574 -327 2503 122 25 37 chr12 29460803 29461236 -114325219 + MSTA LTR MaLR 1 428 0 5138 153 20 34 chr12 29461236 29461560 -114324895 + MER54A LTR ERVL 574 901 0 825 308 47 44 chr12 29461876 29462493 -114323962 + L1ME3A LINE L1 3477 4095 -2051 987 233 88 91 chr12 29462498 29462922 -114323533 - MLT1G3 LTR MaLR 0 530 138 589 88 0 0 chr12 29462922 29463002 -114323453 + AluSp/q SINE Alu 220 299 -14 609 280 156 26 chr12 29463426 29464301 -114322154 + L1ME3A LINE L1 4932 5945 -225 380 273 33 8 chr12 29465081 29465202 -114321253 - MIR3 SINE MIR -3 205 82 1337 309 118 41 chr12 29465245 29465314 -114321141 - L2 LINE L2 -468 2846 2784 2381 76 0 0 chr12 29465314 29465616 -114320839 + AluY SINE Alu 1 302 -9 1337 309 118 41 chr12 29465616 29465850 -114320605 - L2 LINE L2 -530 2784 2569 2174 134 3 18 chr12 29465850 29466192 -114320263 - MER1B DNA MER1_type 0 337 1 1337 309 118 41 chr12 29466192 29466879 -114319576 - L2 LINE L2 -745 2569 1936 194 91 30 0 chr12 29466879 29466912 -114319543 + T-rich Low_complexity Low_complexity 2 35 0 1337 309 118 41 chr12 29466912 29467369 -114319086 - L2 LINE L2 -1378 1936 1211 257 295 9 48 chr12 29468824 29468929 -114317526 - L2 LINE L2 -3 3310 3210 324 0 0 0 chr12 29469069 29469105 -114317350 + (TG)n Simple_repeat Simple_repeat 2 37 0 3366 235 97 52 chr12 29469769 29470950 -114315505 - HAL1 LINE L1 -469 2038 770 877 245 43 12 chr12 29470950 29471203 -114315252 - MIR SINE MIR 0 262 2 3366 235 97 52 chr12 29471203 29471564 -114314891 - HAL1 LINE L1 -1737 770 427 23 0 0 0 chr12 29472660 29472683 -114313772 + AT_rich Low_complexity Low_complexity 1 23 0 2127 99 7 14 chr12 29472888 29473182 -114313273 - AluSq SINE Alu -12 301 10 552 146 0 0 chr12 29474235 29474331 -114312124 - L1PA13 LINE L1 -6 6157 6062 221 316 0 25 chr12 29475971 29476050 -114310405 + MIR SINE MIR 17 93 -115 21 0 0 0 chr12 29477212 29477233 -114309222 + AT_rich Low_complexity Low_complexity 1 21 0 37 52 0 0 chr12 29477949 29478007 -114308448 + AT_rich Low_complexity Low_complexity 1 58 0 209 330 113 10 chr12 29478166 29478263 -114308192 - L2 LINE L2 -2 3311 3205 330 316 14 36 chr12 29478737 29478876 -114307579 + L2 LINE L2 3177 3312 -1 209 308 236 25 chr12 29479198 29479714 -114306741 - L2 LINE L2 -825 2489 1865 207 114 0 0 chr12 29479941 29479976 -114306479 + (CA)n Simple_repeat Simple_repeat 1 35 0 496 63 0 38 chr12 29481348 29481427 -114305028 - L1MB2 LINE L1 -2 6169 6094 2153 141 35 1 chr12 29481434 29481802 -114304653 - L1MB3 LINE L1 -143 6040 5658 30 0 0 0 chr12 29482464 29482494 -114303961 + AT_rich Low_complexity Low_complexity 1 30 0 273 197 0 0 chr12 29482627 29482693 -114303762 + (TA)n Simple_repeat Simple_repeat 1 66 0 321 47 0 0 chr12 29482693 29482736 -114303719 + (TG)n Simple_repeat Simple_repeat 2 44 0 208 241 0 35 chr12 29482914 29482972 -114303483 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 206 343 71 20 chr12 29484420 29484519 -114301936 + MIR3 SINE MIR 90 193 -15 349 294 117 0 chr12 29485384 29485581 -114300874 - L1MC4a LINE L1 -1902 5906 5687 32 26 0 0 chr12 29485770 29485809 -114300646 + AT_rich Low_complexity Low_complexity 1 39 0 204 89 24 73 chr12 29485809 29485933 -114300522 + (TTA)n Simple_repeat Simple_repeat 3 120 0 252 134 85 0 chr12 29485943 29486025 -114300430 + (TTAA)n Simple_repeat Simple_repeat 4 92 0 2038 119 0 3 chr12 29486034 29486320 -114300135 - AluSg SINE Alu -25 285 1 281 207 35 46 chr12 29486324 29486411 -114300044 + L1ME LINE L1 5782 5867 -303 214 400 0 7 chr12 29486710 29486845 -114299610 + CT-rich Low_complexity Low_complexity 2 135 0 370 296 90 101 chr12 29487020 29487497 -114298958 - L1M2 LINE L1 -5604 1245 506 232 185 19 70 chr12 29487573 29487730 -114298725 + (TTA)n Simple_repeat Simple_repeat 1 149 0 * 252 134 85 0 chr12 29487678 29487760 -114298695 + (TTAA)n Simple_repeat Simple_repeat 4 92 0 2035 119 0 3 chr12 29487769 29488055 -114298400 - AluSg SINE Alu -25 285 1 329 233 12 12 chr12 29488059 29488145 -114298310 + L1ME3A LINE L1 5782 5867 -303 294 274 80 74 chr12 29489063 29489238 -114297217 + L2 LINE L2 2486 2661 -653 36 70 0 0 chr12 29489708 29489779 -114296676 + AT_rich Low_complexity Low_complexity 1 71 0 189 336 178 9 chr12 29490420 29490527 -114295928 + L3b LINE CR1 1407 1531 -52 212 318 206 0 chr12 29490562 29490669 -114295786 - L2 LINE L2 -7 3265 3137 268 271 170 14 chr12 29490921 29491279 -114295176 - L1MEc LINE L1 -2928 3201 2788 188 153 41 31 chr12 29491527 29491625 -114294830 + (TA)n Simple_repeat Simple_repeat 1 99 0 328 298 87 80 chr12 29491651 29491963 -114294492 - L1MEc LINE L1 -4752 1558 1245 244 249 99 103 chr12 29492008 29492281 -114294174 - L1MEc LINE L1 -4910 1209 938 10682 40 0 0 chr12 29492533 29494601 -114291854 - L1PA4 LINE L1 -1 6154 4086 9597 36 0 1 chr12 29494601 29495785 -114290670 + L1PA4 LINE L1 2926 4110 -2036 216 204 20 0 chr12 29495888 29495937 -114290518 + (TATG)n Simple_repeat Simple_repeat 1 50 0 657 171 89 0 chr12 29497143 29497266 -114289189 + MER46A DNA MER2_type 2 135 -101 362 161 18 0 chr12 29497274 29497330 -114289125 + MER46A DNA MER2_type 180 236 0 228 402 31 0 chr12 29497675 29497802 -114288653 + L2 LINE L2 2919 3049 -223 356 344 0 16 chr12 29498327 29498452 -114288003 + L2 LINE L2 2847 2969 -303 528 257 86 7 chr12 29498465 29498605 -114287850 + MIR SINE MIR 40 190 -72 1489 233 7 0 chr12 29500389 29500689 -114285766 + AluJo SINE Alu 1 302 -10 1131 211 98 50 chr12 29500919 29501298 -114285157 - MLT2C1 LTR ERVL 0 397 1 2745 118 5 0 chr12 29501990 29502398 -114284057 - L1PB3 LINE L1 -186 5968 5559 * 3548 212 11 9 chr12 29502394 29503235 -114283220 - L1PB3 LINE L1 -989 5157 4316 1720 171 55 9 chr12 29503265 29503609 -114282846 - MER46B DNA MER2_type -1 235 1 2252 108 3 3 chr12 29504063 29504369 -114282086 + AluSp SINE Alu 1 306 -7 206 345 64 47 chr12 29504692 29504863 -114281592 + MIR3 SINE MIR 7 180 -28 235 325 154 5 chr12 29505585 29505758 -114280697 - MIR SINE MIR -50 212 20 16054 175 19 12 chr12 29505899 29509373 -114277082 - L1PA13 LINE L1 -3 6160 2660 2515 58 0 6 chr12 29509373 29509684 -114276771 - AluY SINE Alu -2 309 1 16054 175 19 12 chr12 29509684 29510335 -114276120 - L1PA13 LINE L1 -3503 2660 2015 9301 106 7 0 chr12 29510709 29511987 -114274468 - HSMAR1 DNA Mariner 0 1287 1 817 159 0 29 chr12 29513421 29513559 -114272896 - FRAM SINE Alu -16 160 27 1446 145 66 84 chr12 29513975 29514284 -114272171 + THE1C LTR MaLR 1 303 -72 2120 129 0 0 chr12 29514284 29514578 -114271877 - AluSq SINE Alu -19 294 1 1446 145 66 84 chr12 29514578 29514648 -114271807 + THE1C LTR MaLR 303 373 -2 906 185 165 53 chr12 29514675 29515032 -114271423 + LTR37A LTR ERV1 26 422 -4 33 0 0 0 chr12 29515211 29515244 -114271211 + AT_rich Low_complexity Low_complexity 1 33 0 211 125 42 21 chr12 29515718 29515766 -114270689 + T-rich Low_complexity Low_complexity 2 50 0 50 41 0 31 chr12 29515817 29515914 -114270541 + AT_rich Low_complexity Low_complexity 1 94 0 226 148 56 0 chr12 29516299 29516353 -114270102 + (TA)n Simple_repeat Simple_repeat 2 58 0 180 0 0 0 chr12 29518429 29518449 -114268006 + (CAA)n Simple_repeat Simple_repeat 2 21 0 538 298 74 4 chr12 29518490 29518748 -114267707 - L1ME3A LINE L1 -221 5949 5674 532 184 0 0 chr12 29518899 29519002 -114267453 - L1MC4 LINE L1 -22 8020 7918 957 213 94 63 chr12 29519033 29519447 -114267008 - L1MC4a LINE L1 -1440 6762 6336 277 179 62 131 chr12 29519443 29519588 -114266867 - L1MC4a LINE L1 -2420 5782 5648 * 1175 295 75 67 chr12 29519632 29521401 -114265054 - L1MC4a LINE L1 -859 5681 3899 22 56 0 0 chr12 29521424 29521460 -114264995 + AT_rich Low_complexity Low_complexity 1 36 0 382 280 159 35 chr12 29521592 29521881 -114264574 - L1MC4a LINE L1 -2865 3675 3351 545 324 24 19 chr12 29522029 29522242 -114264213 - MIR SINE MIR 0 262 49 380 347 163 18 chr12 29522369 29522989 -114263466 - L2 LINE L2 -865 2449 1740 262 250 26 35 chr12 29523020 29523136 -114263319 + CT-rich Low_complexity Low_complexity 2 116 0 571 231 238 16 chr12 29523370 29523568 -114262887 - MIR SINE MIR -41 221 1 2363 103 0 0 chr12 29523790 29524100 -114262355 + AluSg SINE Alu 1 310 0 221 265 24 24 chr12 29524875 29524958 -114261497 + L2 LINE L2 3205 3287 -26 1061 310 83 29 chr12 29527779 29528510 -114257945 + L2 LINE L2 2336 3174 -139 481 266 8 32 chr12 29528507 29528631 -114257824 + L2 LINE L2 2603 2723 -591 * 959 233 40 83 chr12 29528849 29529223 -114257232 + LTR37B LTR ERV1 16 373 -95 493 207 47 95 chr12 29529224 29529456 -114256999 + LTR37B LTR ERV1 244 464 -4 404 296 58 43 chr12 29529464 29529755 -114256700 + L2 LINE L2 2991 3272 0 3113 222 97 115 chr12 29530381 29531241 -114255214 - L1MC4a LINE L1 -5141 1399 440 395 258 83 8 chr12 29531241 29531373 -114255082 + LTR37B LTR ERV1 19 160 -308 3113 222 97 115 chr12 29531373 29531786 -114254669 - L1MC4a LINE L1 -6100 440 21 2380 120 34 14 chr12 29532333 29532690 -114253765 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr12 29533867 29533888 -114252567 + AT_rich Low_complexity Low_complexity 1 21 0 1936 143 7 3 chr12 29534865 29535158 -114251297 - AluSq SINE Alu -19 294 1 215 170 21 0 chr12 29536190 29536237 -114250218 + T-rich Low_complexity Low_complexity 1 48 0 225 0 0 0 chr12 29536250 29536275 -114250180 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr12 29537359 29537383 -114249072 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr12 29537726 29537752 -114248703 + AT_rich Low_complexity Low_complexity 1 26 0 1558 153 3 67 chr12 29537942 29538242 -114248213 + AluJo SINE Alu 10 290 -22 439 152 0 0 chr12 29539091 29539157 -114247298 - U4 snRNA snRNA -79 66 1 1568 151 0 16 chr12 29539175 29539427 -114247028 + MER2 DNA MER2_type 1 248 -97 810 202 30 39 chr12 29539424 29539627 -114246828 + MER2 DNA MER2_type 144 344 -1 * 468 303 136 17 chr12 29540839 29541126 -114245329 + L2 LINE L2 2992 3312 -1 1840 175 19 26 chr12 29541143 29541520 -114244935 + MLT1A2 LTR MaLR 1 374 0 202 260 10 29 chr12 29541566 29541670 -114244785 + (TA)n Simple_repeat Simple_repeat 1 102 0 465 261 92 24 chr12 29542431 29542659 -114243796 - L1ME LINE L1 -530 5591 5367 25 31 0 0 chr12 29542681 29542713 -114243742 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr12 29542856 29542885 -114243570 + AT_rich Low_complexity Low_complexity 1 29 0 227 263 81 0 chr12 29542929 29543028 -114243427 - L1ME LINE L1 -1088 5058 4952 290 386 21 0 chr12 29543408 29543553 -114242902 - L2 LINE L2 -235 3037 2890 205 359 100 36 chr12 29543643 29543924 -114242531 - L2 LINE L2 -560 2754 2456 333 351 199 19 chr12 29544140 29544351 -114242104 + L2 LINE L2 2554 2802 -512 * 511 242 45 15 chr12 29544350 29544482 -114241973 + MIR SINE MIR 117 252 -10 25 0 0 0 chr12 29544602 29544627 -114241828 + AT_rich Low_complexity Low_complexity 1 25 0 610 294 155 57 chr12 29545036 29545474 -114240981 - L2 LINE L2 0 3313 2833 23 0 0 0 chr12 29545562 29545585 -114240870 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr12 29546048 29546072 -114240383 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 2253 16 0 0 chr12 29546097 29546354 -114240101 - L1PA3 LINE L1 -4 6151 5895 376 241 43 46 chr12 29546707 29546815 -114239640 - MER41E LTR ERV1 -205 430 323 2811 162 40 58 chr12 29546815 29547438 -114239017 + LTR9 LTR ERV1 1 612 0 376 241 43 46 chr12 29547438 29547573 -114238882 - MER41E LTR ERV1 -312 323 54 26 0 0 0 chr12 29549152 29549178 -114237277 + AT_rich Low_complexity Low_complexity 1 26 0 7074 52 9 0 chr12 29549315 29550376 -114236079 - L1PA6 LINE L1 -5 6149 5085 180 313 0 30 chr12 29552049 29552116 -114234339 + L3 LINE CR1 1095 1159 -418 1786 218 25 17 chr12 29552402 29552806 -114233649 + MER82 DNA MER2_type 130 536 -117 2285 106 0 0 chr12 29552807 29553109 -114233346 + AluY SINE Alu 1 302 -9 568 277 8 0 chr12 29553127 29553257 -114233198 + MER82 DNA MER2_type 522 652 -1 339 85 0 0 chr12 29553734 29553781 -114232674 + (TG)n Simple_repeat Simple_repeat 2 48 0 250 216 27 0 chr12 29554677 29554777 -114231678 + (TA)n Simple_repeat Simple_repeat 1 102 0 522 127 64 3 chr12 29554793 29555125 -114231330 + (TA)n Simple_repeat Simple_repeat 1 352 0 1365 203 41 0 chr12 29555125 29555396 -114231059 - AluJb SINE Alu -27 285 4 24 32 0 0 chr12 29555404 29555435 -114231020 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr12 29555634 29555655 -114230800 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr12 29556537 29556593 -114229862 + AT_rich Low_complexity Low_complexity 1 56 0 598 285 116 11 chr12 29557651 29557918 -114228537 - L2 LINE L2 -6 3307 3013 791 40 0 0 chr12 29558012 29558111 -114228344 - L1PA5 LINE L1 0 6154 6056 1564 264 152 39 chr12 29558133 29558522 -114227933 - L2 LINE L2 -354 2960 2616 2362 112 0 0 chr12 29558522 29558834 -114227621 - AluSx SINE Alu 0 312 1 1564 264 152 39 chr12 29558834 29559163 -114227292 - L2 LINE L2 -698 2616 2161 910 190 87 10 chr12 29559251 29559446 -114227009 - MER2 DNA MER2_type -134 211 2 518 275 107 0 chr12 29559482 29559631 -114226824 + MIR SINE MIR 25 189 -73 221 231 15 15 chr12 29559641 29559706 -114226749 + (TA)n Simple_repeat Simple_repeat 1 65 0 1952 199 83 7 chr12 29559710 29560167 -114226288 - Charlie1b DNA MER1_type 0 523 32 849 264 29 64 chr12 29560196 29560276 -114226179 - MLT1D LTR MaLR -205 300 219 3989 155 17 61 chr12 29560276 29561097 -114225358 - LTR1 LTR ERV1 0 785 1 849 264 29 64 chr12 29561097 29561327 -114225128 - MLT1D LTR MaLR -286 219 1 1304 251 202 26 chr12 29561408 29561596 -114224859 - L2 LINE L2 -1175 2139 1986 1083 245 88 57 chr12 29561596 29562086 -114224369 + MLT1D LTR MaLR 1 505 0 1304 251 202 26 chr12 29562086 29562599 -114223856 - L2 LINE L2 -1328 1986 1314 235 164 15 15 chr12 29562861 29562928 -114223527 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 406 229 178 0 chr12 29564313 29564431 -114222024 - MIR SINE MIR -6 256 118 21 57 0 0 chr12 29564714 29564749 -114221706 + AT_rich Low_complexity Low_complexity 1 35 0 198 224 0 0 chr12 29564926 29564975 -114221480 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 357 240 78 69 chr12 29565269 29565486 -114220969 - HAL1 LINE L1 -4 2503 2285 522 295 0 0 chr12 29565511 29565660 -114220795 - HAL1 LINE L1 -302 2205 2057 2317 209 64 13 chr12 29566270 29566740 -114219715 - MER21B LTR ERV1 -364 499 6 6316 166 23 16 chr12 29566745 29568260 -114218195 - MER21B-int LTR ERV1 0 4191 2608 1796 296 93 27 chr12 29568358 29568407 -114218048 - HAL1 LINE L1 -1333 1174 1130 1891 169 0 0 chr12 29568407 29568714 -114217741 - AluJb SINE Alu -4 308 2 1796 296 93 27 chr12 29568714 29569134 -114217321 - HAL1 LINE L1 -1377 1130 739 701 265 41 0 chr12 29569134 29569304 -114217151 + MER45A DNA AcHobo 1 177 -1 1796 296 93 27 chr12 29569304 29569842 -114216613 - HAL1 LINE L1 -1768 739 86 210 71 0 0 chr12 29569842 29569870 -114216585 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1796 296 93 27 chr12 29569870 29569951 -114216504 - HAL1 LINE L1 -2421 86 12 1211 226 81 42 chr12 29570268 29570701 -114215754 - MLT1C LTR MaLR -10 457 8 1434 201 71 86 chr12 29570717 29571125 -114215330 - MLT1C-int LTR MaLR -9 1362 961 567 261 30 0 chr12 29571514 29571648 -114214807 - MLT1C-int LTR MaLR -511 860 723 3972 161 34 7 chr12 29571649 29572352 -114214103 - Tigger1 DNA MER2_type 0 2418 1697 7142 153 43 7 chr12 29572377 29573552 -114212903 - Tigger1 DNA MER2_type -1124 1294 70 1229 110 6 0 chr12 29573552 29573734 -114212721 + L1PA13 LINE L1 5962 6144 -19 7142 153 43 7 chr12 29573734 29573797 -114212658 - Tigger1 DNA MER2_type -2348 70 11 892 267 75 48 chr12 29573806 29574222 -114212233 - MLT1C LTR MaLR -40 427 1 328 322 21 14 chr12 29574669 29574812 -114211643 + CT-rich Low_complexity Low_complexity 2 145 0 393 348 0 0 chr12 29577392 29577510 -114208945 + MIR3 SINE MIR 86 203 -5 270 211 0 18 chr12 29577808 29577865 -114208590 - MIR3 SINE MIR -28 180 125 22 0 0 0 chr12 29577872 29577894 -114208561 + AT_rich Low_complexity Low_complexity 1 22 0 424 265 142 33 chr12 29578336 29578547 -114207908 - L2 LINE L2 -142 3171 2938 2353 78 0 0 chr12 29578588 29578883 -114207572 - AluSg SINE Alu -15 295 1 291 283 50 0 chr12 29579200 29579299 -114207156 + MER103 DNA DNA 11 114 -52 781 297 81 31 chr12 29579391 29579809 -114206646 + Charlie7 DNA MER1_type 7 445 -2167 356 293 42 30 chr12 29580079 29580246 -114206209 - MLT1J1 LTR MaLR -115 331 163 808 283 40 65 chr12 29580253 29580758 -114205697 - L1M4 LINE L1 -2316 4641 4150 26 0 0 0 chr12 29580847 29580873 -114205582 + AT_rich Low_complexity Low_complexity 1 26 0 2070 37 0 0 chr12 29580873 29581119 -114205336 - L1PA3 LINE L1 -3 6152 5907 350 283 84 47 chr12 29581189 29581380 -114205075 - L1MEd LINE L1 -5018 1101 904 203 170 38 94 chr12 29581744 29581797 -114204658 - MER5A DNA MER1_type 0 189 140 31 0 0 0 chr12 29582660 29582691 -114203764 + AT_rich Low_complexity Low_complexity 1 31 0 234 287 96 7 chr12 29582973 29583109 -114203346 - L1MC/D LINE L1 -1899 5909 5762 24 0 0 0 chr12 29583145 29583169 -114203286 + AT_rich Low_complexity Low_complexity 1 24 0 2446 62 20 0 chr12 29583291 29583595 -114202860 + AluY SINE Alu 1 310 -1 2231 113 0 7 chr12 29583793 29584103 -114202352 + AluSx SINE Alu 1 308 -4 233 281 124 0 chr12 29585290 29585379 -114201076 - L2 LINE L2 0 3313 3214 4741 256 100 47 chr12 29585779 29587385 -114199070 + L1MDa LINE L1 17 1729 -4811 1660 225 24 34 chr12 29587385 29587803 -114198652 + MLT2D LTR ERVL 1 414 0 4741 256 100 47 chr12 29587803 29587980 -114198475 + L1MDa LINE L1 1729 1895 -4645 1494 227 58 45 chr12 29587986 29588362 -114198093 - L1M4 LINE L1 -3327 3630 3261 1287 156 168 34 chr12 29588362 29588509 -114197946 - THE1C LTR MaLR -4 371 245 303 28 0 0 chr12 29588509 29588545 -114197910 + (GA)n Simple_repeat Simple_repeat 1 36 0 1287 156 168 34 chr12 29588545 29588724 -114197731 - THE1C LTR MaLR -130 245 1 8898 147 11 35 chr12 29588724 29590340 -114196115 - THE1C-int LTR MaLR 0 1580 3 1897 154 46 30 chr12 29590342 29590711 -114195744 - THE1C LTR MaLR 0 375 1 1494 227 58 45 chr12 29590711 29590843 -114195612 - L1M4 LINE L1 -3696 3261 3107 1972 165 18 6 chr12 29590843 29591176 -114195279 + MER1B DNA MER1_type 1 337 0 1494 227 58 45 chr12 29591176 29591243 -114195212 - L1M4 LINE L1 -3850 3107 3042 451 319 43 0 chr12 29591396 29591537 -114194918 - MER8 DNA MER2_type -87 152 6 242 239 43 22 chr12 29591542 29591634 -114194821 - L1M4 LINE L1 -4572 2387 2294 * 5029 182 24 15 chr12 29591630 29592721 -114193734 - L1 LINE L1 -1096 5050 3950 994 272 80 21 chr12 29592764 29593333 -114193122 - L1M4 LINE L1 -4726 2233 1637 347 215 43 92 chr12 29593307 29593398 -114193057 - L1M4 LINE L1 -6694 165 84 * 2050 145 16 21 chr12 29593398 29593771 -114192684 + THE1C LTR MaLR 5 375 0 347 215 43 92 chr12 29593771 29593842 -114192613 - L1M4 LINE L1 -6775 84 11 361 269 107 37 chr12 29594726 29594968 -114191487 + MIR SINE MIR 3 261 -1 21 0 0 0 chr12 29596708 29596729 -114189726 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 29597213 29597236 -114189219 + AT_rich Low_complexity Low_complexity 1 23 0 6826 54 5 29 chr12 29598752 29599879 -114186576 + L1PA6 LINE L1 5048 6153 -1 48 0 0 0 chr12 29601820 29601868 -114184587 + AT_rich Low_complexity Low_complexity 1 48 0 181 274 274 0 chr12 29604074 29604136 -114182319 + L2 LINE L2 3235 3313 0 338 290 53 15 chr12 29604899 29605030 -114181425 - L2 LINE L2 -1 3312 3177 2144 110 0 3 chr12 29605903 29606202 -114180253 - AluSg SINE Alu -12 298 1 5927 92 14 2 chr12 29606928 29607780 -114178675 - L1PB1 LINE L1 -1 6150 5289 2169 207 15 0 chr12 29607781 29608259 -114178196 + L1M4 LINE L1 4124 4608 -1538 1574 238 36 7 chr12 29608258 29608670 -114177785 + L1P LINE L1 4855 5278 -868 * 21 0 0 0 chr12 29609111 29609132 -114177323 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 29609352 29609380 -114177075 + AT_rich Low_complexity Low_complexity 1 28 0 338 247 0 0 chr12 29609448 29609533 -114176922 + L1M4 LINE L1 5048 5132 -1014 944 149 72 16 chr12 29609536 29609730 -114176725 + THE1C LTR MaLR 1 205 -170 189 0 0 0 chr12 29610231 29610252 -114176203 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 22 35 0 0 chr12 29610507 29610536 -114175919 + AT_rich Low_complexity Low_complexity 1 29 0 264 122 0 0 chr12 29611604 29611645 -114174810 + (T)n Simple_repeat Simple_repeat 1 41 0 887 328 70 14 chr12 29613002 29613347 -114173108 - MLT1I LTR MaLR -45 364 1 22 56 0 0 chr12 29614050 29614086 -114172369 + AT_rich Low_complexity Low_complexity 1 36 0 738 268 106 0 chr12 29614552 29614787 -114171668 + L1 LINE L1 4274 4533 -1613 2269 80 13 0 chr12 29614884 29615183 -114171272 + AluY SINE Alu 9 311 0 203 286 0 0 chr12 29615345 29615394 -114171061 - MIR3 SINE MIR -17 191 143 195 129 0 0 chr12 29615403 29615434 -114171021 + (TC)n Simple_repeat Simple_repeat 1 31 0 637 289 90 14 chr12 29615457 29615668 -114170787 + MIR SINE MIR 5 231 -31 215 347 0 0 chr12 29615724 29615773 -114170682 - MIR SINE MIR -129 79 31 1362 238 52 48 chr12 29615911 29616311 -114170144 - MER21B LTR ERV1 -58 805 404 526 199 247 32 chr12 29616317 29616547 -114169908 + MER21B LTR ERV1 42 358 -505 558 298 128 90 chr12 29617010 29617336 -114169119 - L2 LINE L2 -528 2786 2474 414 69 0 0 chr12 29617336 29617394 -114169061 + (TG)n Simple_repeat Simple_repeat 1 58 0 558 298 128 90 chr12 29617394 29618116 -114168339 - L2 LINE L2 -840 2474 1698 189 216 176 0 chr12 29618672 29618723 -114167732 + L2 LINE L2 3191 3250 -63 225 158 0 0 chr12 29618818 29618856 -114167599 - MER3 DNA MER1_type -160 49 12 1864 259 71 17 chr12 29618858 29619700 -114166755 - L1ME1 LINE L1 -152 6294 5413 606 124 52 0 chr12 29619704 29619801 -114166654 - THE1C LTR MaLR -2 373 272 2374 93 84 0 chr12 29619803 29620147 -114166308 - THE1C LTR MaLR -2 373 1 10095 100 22 67 chr12 29620152 29621032 -114165423 - THE1C-int LTR MaLR -6 1574 801 207 0 0 0 chr12 29621032 29621055 -114165400 + (CCCCCA)n Simple_repeat Simple_repeat 4 26 0 10095 100 22 67 chr12 29621055 29621822 -114164633 - THE1C-int LTR MaLR -779 801 1 2541 99 14 3 chr12 29621823 29622178 -114164277 - THE1C LTR MaLR -1 374 16 1292 134 111 20 chr12 29622185 29622438 -114164017 - THE1C LTR MaLR -99 276 1 541 243 120 60 chr12 29622441 29622758 -114163697 - L1ME1 LINE L1 -1014 5412 5077 692 242 42 0 chr12 29622758 29622923 -114163532 - MER20 DNA MER1_type -1 218 47 7120 230 52 26 chr12 29622923 29623990 -114162465 - L1ME1 LINE L1 -1589 4837 3799 1478 190 32 69 chr12 29623990 29624369 -114162086 - MLT1A1 LTR MaLR 0 365 1 7120 230 52 26 chr12 29624369 29626238 -114160217 - L1ME1 LINE L1 -2627 3799 1823 1036 60 40 20 chr12 29626777 29626927 -114159528 - L1PA11 LINE L1 -3 6171 6019 242 161 49 111 chr12 29626934 29627015 -114159440 - L1ME1 LINE L1 -4596 1830 1755 * 332 241 0 35 chr12 29627012 29627099 -114159356 - L1ME LINE L1 -473 5762 5679 2846 215 44 83 chr12 29627133 29627588 -114158867 - L1ME LINE L1 -795 5420 4948 2226 157 44 7 chr12 29627588 29628001 -114158454 + MSTA LTR MaLR 1 428 0 2846 215 44 83 chr12 29628001 29628623 -114157832 - L1ME LINE L1 -1267 4948 4386 213 94 0 0 chr12 29628627 29628659 -114157796 + (TA)n Simple_repeat Simple_repeat 2 33 0 3894 65 0 2 chr12 29628660 29629327 -114157128 - L1PA8 LINE L1 0 6172 5312 2157 129 0 0 chr12 29629327 29629636 -114156819 - AluSx SINE Alu -3 309 1 854 229 101 35 chr12 29629636 29630003 -114156452 - L1ME LINE L1 -1836 4379 3989 2437 247 52 39 chr12 29630046 29631197 -114155258 - L1MEc LINE L1 -2786 3429 2275 2080 117 0 0 chr12 29631197 29631515 -114154940 - AluSx SINE Alu 0 318 1 2437 247 52 39 chr12 29631515 29631737 -114154718 - L1MEc LINE L1 -3940 2275 2057 717 228 0 20 chr12 29632325 29632474 -114153981 + Tigger3(Golem) DNA MER2_type 2 147 -2882 * 794 90 83 14 chr12 29632446 29632591 -114153864 + Tigger3(Golem) DNA MER2_type 2041 2195 -834 * 802 138 0 0 chr12 29632587 29632710 -114153745 - MSTB2 LTR MaLR -316 141 19 1586 157 0 0 chr12 29632715 29632957 -114153498 + Tigger3(Golem) DNA MER2_type 2788 3029 0 883 116 116 7 chr12 29633020 29633167 -114153288 + MER34B LTR ERV1 1 163 -402 642 130 0 0 chr12 29633184 29633284 -114153171 - LTR12 LTR ERV1 0 714 615 282 263 34 17 chr12 29633286 29633404 -114153051 - LTR30 LTR ERV1 -79 643 524 320 85 0 0 chr12 29633491 29633538 -114152917 - LTR12 LTR ERV1 -480 234 188 242 219 137 0 chr12 29633538 29633611 -114152844 - LTR30 LTR ERV1 -639 83 1 * 2343 166 34 7 chr12 29633611 29634011 -114152444 + MER34B LTR ERV1 155 565 0 263 186 29 14 chr12 29634764 29634834 -114151621 + MLT1J1 LTR MaLR 362 432 -14 22 35 0 0 chr12 29635180 29635209 -114151246 + AT_rich Low_complexity Low_complexity 1 29 0 2348 72 14 0 chr12 29635921 29636213 -114150242 - AluSp SINE Alu -17 296 1 225 0 0 0 chr12 29636358 29636383 -114150072 + (TG)n Simple_repeat Simple_repeat 2 26 0 1597 176 103 39 chr12 29637068 29637506 -114148949 - MER31B LTR ERV1 0 466 1 25 0 0 0 chr12 29637879 29637904 -114148551 + AT_rich Low_complexity Low_complexity 1 25 0 2135 232 43 76 chr12 29637937 29638237 -114148218 - L1ME1 LINE L1 -1 6165 5857 1110 166 16 43 chr12 29638237 29638314 -114148141 - L1MA9 LINE L1 0 6312 6234 189 0 0 0 chr12 29638314 29638335 -114148120 + (TA)n Simple_repeat Simple_repeat 2 22 0 1110 166 16 43 chr12 29638335 29638510 -114147945 - L1MA9 LINE L1 -78 6234 6067 2135 232 43 76 chr12 29638510 29638946 -114147509 - L1ME1 LINE L1 -309 5857 5453 1615 213 3 0 chr12 29640447 29640748 -114145707 - AluJb SINE Alu -10 302 1 189 274 137 41 chr12 29641170 29641243 -114145212 - L2 LINE L2 -29 3243 3164 321 347 27 7 chr12 29641597 29641744 -114144711 - L1MC/D LINE L1 -2047 6179 6030 2425 117 4 80 chr12 29641901 29642362 -114144093 - L1PA15 LINE L1 -9 6156 5731 698 184 0 151 chr12 29642362 29642590 -114143865 + MLT2C1 LTR ERVL 205 397 0 265 60 0 40 chr12 29643629 29643679 -114142776 + (TTG)n Simple_repeat Simple_repeat 2 49 0 586 316 208 36 chr12 29644046 29644632 -114141823 + L3 LINE CR1 457 1143 -434 1189 195 4 13 chr12 29644695 29644921 -114141534 - AluJo SINE Alu -88 224 1 296 309 119 10 chr12 29645031 29645225 -114141230 - L1MC/D LINE L1 -531 6049 5835 24 0 0 0 chr12 29645336 29645360 -114141095 + AT_rich Low_complexity Low_complexity 1 24 0 300 246 45 77 chr12 29645441 29645661 -114140794 - L1MC/D LINE L1 -989 5575 5363 2455 237 19 36 chr12 29645705 29646402 -114140053 + MER76 LTR ERV 1 685 -3 914 188 16 36 chr12 29646414 29646606 -114139849 + MER5A DNA MER1_type 1 188 -1 227 278 111 0 chr12 29646662 29646752 -114139703 - L1MC/D LINE L1 -1294 5270 5171 3375 210 80 164 chr12 29646795 29648525 -114137930 - L1MCb LINE L1 -4819 1745 1 2245 93 10 13 chr12 29648980 29649293 -114137162 + AluSp SINE Alu 1 312 -1 22 35 0 0 chr12 29650180 29650209 -114136246 + AT_rich Low_complexity Low_complexity 1 29 0 389 272 38 32 chr12 29650424 29650582 -114135873 - L1ME1 LINE L1 -8 6158 6000 732 290 138 28 chr12 29651697 29652311 -114134144 - L1M4 LINE L1 -3261 2885 2204 * 7994 226 67 26 chr12 29652309 29652776 -114133679 - L1MC1 LINE L1 -37 6576 6130 641 69 11 0 chr12 29652776 29652863 -114133592 - L1PA10 LINE L1 -5 6163 6076 7994 226 67 26 chr12 29652863 29652946 -114133509 - L1MC1 LINE L1 -483 6130 6052 1626 150 64 64 chr12 29652946 29653320 -114133135 + THE1C LTR MaLR 1 374 -1 7994 226 67 26 chr12 29653320 29657465 -114128990 - L1MC1 LINE L1 -561 6052 1680 442 98 0 0 chr12 29657645 29657706 -114128749 - Alu SINE Alu -20 292 232 28 29 0 0 chr12 29657782 29657817 -114128638 + AT_rich Low_complexity Low_complexity 1 35 0 533 313 139 20 chr12 29658180 29658682 -114127773 - Tigger8 DNA MER2_type -100 566 5 1147 206 25 108 chr12 29658841 29659239 -114127216 + MLT1A1 LTR MaLR 1 365 0 451 186 12 12 chr12 29659325 29659411 -114127044 + Tigger5 DNA MER2_type 3 88 -2235 477 188 0 0 chr12 29659445 29659525 -114126930 + Tigger5 DNA MER2_type 2244 2323 0 270 81 0 0 chr12 29660401 29660438 -114126017 + (T)n Simple_repeat Simple_repeat 1 37 0 1697 195 114 51 chr12 29661127 29661466 -114124989 + L1ME2 LINE L1 4985 5301 -863 2379 93 3 0 chr12 29661466 29661776 -114124679 + AluSx SINE Alu 1 311 -1 1697 195 114 51 chr12 29661776 29662281 -114124174 + L1ME2 LINE L1 5301 5887 -277 270 280 0 28 chr12 29662264 29662371 -114124084 - L1MC4 LINE L1 -1325 6717 6614 * 258 137 0 59 chr12 29662374 29662476 -114123979 + (TA)n Simple_repeat Simple_repeat 2 97 0 397 284 0 21 chr12 29662662 29662803 -114123652 + L1MC5 LINE L1 7769 7906 -55 189 0 0 0 chr12 29663532 29663553 -114122902 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 650 215 207 15 chr12 29664412 29664673 -114121782 - MER5C DNA MER1_type 0 324 14 2343 120 6 0 chr12 29665176 29665533 -114120922 + L1PA14 LINE L1 5794 6152 -9 329 335 101 10 chr12 29666108 29666317 -114120138 + HAL1 LINE L1 162 389 -2118 840 215 169 33 chr12 29666324 29666626 -114119829 - MLT1A1 LTR MaLR 0 365 23 430 340 81 12 chr12 29666704 29666951 -114119504 + HAL1 LINE L1 460 723 -1784 1182 171 0 10 chr12 29667254 29667459 -114118996 - AluJb SINE Alu -109 203 1 312 318 84 9 chr12 29667720 29667934 -114118521 + L1ME LINE L1 5544 5773 -348 22 35 0 0 chr12 29668006 29668035 -114118420 + AT_rich Low_complexity Low_complexity 1 29 0 616 148 10 0 chr12 29668264 29668365 -114118090 + AluJ/FLAM SINE Alu 1 102 -210 216 86 0 0 chr12 29668404 29668439 -114118016 + (CAGGG)n Simple_repeat Simple_repeat 3 37 0 1357 285 50 10 chr12 29670207 29670688 -114115767 - MLT1J LTR MaLR -1 510 11 3225 195 86 1 chr12 29671582 29672258 -114114197 + MER44D DNA MER2_type 1 605 0 620 238 17 52 chr12 29673237 29673409 -114113046 + MIR3 SINE MIR 13 178 -30 942 186 47 33 chr12 29673443 29673658 -114112797 + MER20 DNA MER1_type 1 218 -1 477 263 44 31 chr12 29673702 29673862 -114112593 - Charlie8 DNA MER1_type -2248 169 8 394 301 147 12 chr12 29674160 29674323 -114112132 - MIR3 SINE MIR -3 205 21 2734 78 17 0 chr12 29676396 29676754 -114109701 + THE1B LTR MaLR 1 364 0 1664 154 103 0 chr12 29677060 29677332 -114109123 - AluJo SINE Alu -2 310 11 1063 156 0 31 chr12 29677994 29678186 -114108269 - L1PA13 LINE L1 -12 6151 5966 * 6057 126 6 0 chr12 29678184 29679581 -114106874 + L1PA8 LINE L1 4800 6172 0 2729 215 44 84 chr12 29679616 29680238 -114106217 + L1ME3A LINE L1 4317 4878 -1268 2247 157 44 7 chr12 29680238 29680651 -114105804 - MSTA LTR MaLR 0 428 1 2729 215 44 84 chr12 29680651 29681107 -114105348 + L1ME3A LINE L1 4878 5351 -795 250 273 0 0 chr12 29681163 29681229 -114105226 + L1ME3A LINE L1 5628 5693 -473 1044 60 40 20 chr12 29681314 29681464 -114104991 + L1PA11 LINE L1 6019 6171 -3 2265 227 74 21 chr12 29682003 29683425 -114103030 + L1MCa LINE L1 1823 3323 -3103 374 284 45 26 chr12 29683902 29684057 -114102398 + L1ME3A LINE L1 6000 6157 -13 22 35 0 0 chr12 29684272 29684301 -114102154 + AT_rich Low_complexity Low_complexity 1 29 0 2209 113 7 0 chr12 29685193 29685502 -114100953 - AluSp SINE Alu -2 311 1 726 300 88 18 chr12 29685505 29685788 -114100667 + MLT1H LTR MaLR 177 479 -70 7789 201 75 28 chr12 29685789 29687830 -114098625 - Cheshire DNA MER1_type 0 2420 285 516 228 106 0 chr12 29687830 29687953 -114098502 - Cheshire DNA MER1_type -2282 138 3 245 201 46 0 chr12 29687953 29688021 -114098434 + MLT1H LTR MaLR 492 587 -8 311 280 82 39 chr12 29688030 29688212 -114098243 + HAL1 LINE L1 2156 2345 -162 1277 44 0 0 chr12 29688237 29688397 -114098058 + L1P LINE L1 2752 2911 -3235 2422 96 0 0 chr12 29690657 29690969 -114095486 - AluSx SINE Alu 0 312 1 1033 192 116 27 chr12 29691014 29691306 -114095149 - L1M4 LINE L1 -844 5302 4985 317 133 17 0 chr12 29691941 29692001 -114094454 + L1PB1 LINE L1 6060 6120 -31 493 126 0 0 chr12 29692001 29692084 -114094371 + L1PB1 LINE L1 6065 6151 0 1198 229 76 17 chr12 29692724 29693026 -114093429 + MSTD LTR MaLR 1 320 -76 1808 195 0 3 chr12 29693042 29693350 -114093105 - AluJb SINE Alu -5 307 1 289 318 84 9 chr12 29693611 29693825 -114092630 + L1ME LINE L1 5544 5773 -348 22 35 0 0 chr12 29693897 29693926 -114092529 + AT_rich Low_complexity Low_complexity 1 29 0 393 149 15 0 chr12 29694157 29694224 -114092231 + AluJ/FLAM SINE Alu 1 68 -234 189 0 0 0 chr12 29695144 29695165 -114091290 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 383 284 0 21 chr12 29695894 29696035 -114090420 - L1MC5 LINE L1 -55 7906 7769 226 350 14 7 chr12 29696038 29696181 -114090274 - L1ME3A LINE L1 -7 6163 6020 258 137 0 59 chr12 29696221 29696323 -114090132 + (TA)n Simple_repeat Simple_repeat 2 97 0 260 280 0 28 chr12 29696326 29696433 -114090022 + L1MC4 LINE L1 6614 6717 -1325 * 678 206 22 43 chr12 29696416 29696452 -114090003 - L1ME3A LINE L1 -275 5887 5852 378 263 100 25 chr12 29696452 29696677 -114089778 - L1MA3 LINE L1 -450 5855 5614 22 0 0 0 chr12 29697098 29697120 -114089335 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr12 29697120 29697143 -114089312 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 29697470 29697491 -114088964 + GC_rich Low_complexity Low_complexity 1 21 0 219 133 0 0 chr12 29697504 29697549 -114088906 + (G)n Simple_repeat Simple_repeat 1 45 0 273 306 0 27 chr12 29699061 29699172 -114087283 - MIR3 SINE MIR -3 205 98 609 154 41 24 chr12 29699491 29699614 -114086841 + MSTD LTR MaLR 272 396 0 8668 111 10 11 chr12 29699895 29701292 -114085163 + L1P LINE L1 2678 4073 -2073 826 93 0 110 chr12 29701475 29701721 -114084734 - AluSg/x SINE Alu 0 310 92 327 345 104 48 chr12 29702085 29702441 -114084014 + L2 LINE L2 2809 3184 -88 2554 61 3 3 chr12 29702643 29702973 -114083482 + L1PA6 LINE L1 5824 6153 -1 297 267 0 0 chr12 29703850 29703955 -114082500 + C-rich Low_complexity Low_complexity 1 105 0 542 253 34 7 chr12 29704405 29704551 -114081904 - L2 LINE L2 -6 3307 3158 2574 176 56 7 chr12 29704555 29705347 -114081108 + L1MB7 LINE L1 5021 5858 -326 3449 129 13 2 chr12 29705456 29706006 -114080449 + L1MA2 LINE L1 5452 6007 -297 318 209 23 12 chr12 29707248 29707334 -114079121 + L1MA9 LINE L1 6078 6164 -148 301 317 137 5 chr12 29707345 29707550 -114078905 + L1MDa LINE L1 1707 1938 -4602 356 159 0 0 chr12 29707951 29708014 -114078441 + MADE1 DNA Mariner 6 68 -12 198 103 0 0 chr12 29708168 29708197 -114078258 + (T)n Simple_repeat Simple_repeat 1 29 0 7372 36 1 0 chr12 29708220 29709691 -114076764 - L1PA4 LINE L1 -3 6152 4687 203 177 13 63 chr12 29710293 29710372 -114076083 + (CGGGG)n Simple_repeat Simple_repeat 5 79 0 23 0 0 0 chr12 29710385 29710408 -114076047 + GC_rich Low_complexity Low_complexity 1 23 0 1069 326 98 26 chr12 29710488 29711291 -114075164 - HERV16 LTR ERVL -2413 3241 2381 357 382 26 18 chr12 29711295 29711523 -114074932 - HERV16 LTR ERVL -3540 2114 1885 490 242 74 42 chr12 29712420 29712610 -114073845 - LTR67 LTR ERVL -2 555 360 315 299 161 11 chr12 29712736 29712910 -114073545 - LTR67 LTR ERVL -356 201 2 321 284 10 29 chr12 29713224 29713326 -114073129 + L1MC4 LINE L1 6604 6703 -1339 229 208 104 52 chr12 29714811 29714888 -114071567 - MLT1I LTR MaLR -272 137 57 387 228 30 40 chr12 29715130 29715231 -114071224 - L2 LINE L2 0 3313 3214 * 554 252 14 48 chr12 29715228 29715375 -114071080 + L2 LINE L2 3172 3313 0 7048 48 6 0 chr12 29715739 29716836 -114069619 - L1PA7 LINE L1 -8 6146 5036 8431 33 1 0 chr12 29717515 29718534 -114067921 - L1PA3 LINE L1 -1928 4218 3199 9888 25 2 1 chr12 29718534 29720468 -114065987 + L1PA3 LINE L1 4218 6152 -3 503 237 106 66 chr12 29720862 29721060 -114065395 + L2 LINE L2 2465 2670 -644 764 22 0 0 chr12 29721766 29721856 -114064599 + 5S rRNA rRNA 1 90 -31 280 205 24 24 chr12 29722491 29722574 -114063881 - LTR67 LTR ERVL 0 557 475 703 283 35 15 chr12 29722943 29723141 -114063314 - MIR SINE MIR -4 258 57 667 198 23 35 chr12 29723659 29723831 -114062624 - MER20 DNA MER1_type -5 214 45 898 286 118 23 chr12 29724123 29724514 -114061941 - LTR16A LTR ERVL -6 444 17 1012 314 66 42 chr12 29724751 29725387 -114061068 - HERV16 LTR ERVL -503 5261 4611 797 262 77 4 chr12 29725413 29725661 -114060794 - HERV16 LTR ERVL -3862 1134 869 21 71 0 0 chr12 29725938 29725980 -114060475 + AT_rich Low_complexity Low_complexity 1 42 0 1611 242 107 31 chr12 29726575 29726610 -114059845 - MLT2B1 LTR ERVL -8 512 481 189 0 0 0 chr12 29726610 29726631 -114059824 + (TG)n Simple_repeat Simple_repeat 2 22 0 1611 242 107 31 chr12 29726631 29727071 -114059384 - MLT2B1 LTR ERVL -39 481 1 411 266 120 62 chr12 29727241 29727500 -114058955 + L2 LINE L2 2337 2610 -704 501 279 114 49 chr12 29727505 29727996 -114058459 + L2 LINE L2 2521 3311 -2 1082 220 14 9 chr12 29728860 29729083 -114057372 + MER58A DNA MER1_type 1 224 0 243 164 0 115 chr12 29729654 29729715 -114056740 + MIR SINE MIR 199 252 -10 1166 156 71 18 chr12 29729747 29729971 -114056484 + MER46A DNA MER2_type 1 236 0 4335 139 12 23 chr12 29730073 29731214 -114055241 - L1PA14 LINE L1 -243 5918 4800 1219 124 6 5 chr12 29731212 29731412 -114055043 + L1PA13 LINE L1 5966 6166 -8 * 528 245 7 35 chr12 29732164 29732307 -114054148 - L1ME3A LINE L1 -63 6107 5969 1543 191 55 60 chr12 29732617 29732695 -114053760 - MSTD LTR MaLR 0 396 319 1822 187 7 3 chr12 29732695 29733000 -114053455 + AluJo SINE Alu 1 306 -6 1543 191 55 60 chr12 29733000 29733319 -114053136 - MSTD LTR MaLR -77 319 1 493 126 0 0 chr12 29733959 29734046 -114052409 - L1PB1 LINE L1 0 6151 6065 5595 171 63 24 chr12 29734047 29735667 -114050788 - L1PB1 LINE L1 -36 6831 5092 243 0 0 0 chr12 29735667 29735694 -114050761 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 5595 171 63 24 chr12 29735694 29735934 -114050521 - L1PB1 LINE L1 -1775 5092 4863 28506 49 1 1 chr12 29735944 29740319 -114046136 - L1PA5 LINE L1 -2 6152 1777 1323 71 0 0 chr12 29740319 29740488 -114045967 + L1PA5 LINE L1 1634 1802 -4344 * 13532 174 81 8 chr12 29740484 29745024 -114041431 - L1PB1 LINE L1 -1985 4877 6 305 147 162 0 chr12 29745107 29745175 -114041280 - AluJ/FRAM SINE Alu 0 302 224 411 222 94 0 chr12 29745198 29745315 -114041140 + L1MC4a LINE L1 5721 5848 -1960 186 133 0 0 chr12 29745373 29745403 -114041052 + (TA)n Simple_repeat Simple_repeat 1 30 0 1312 260 118 42 chr12 29746391 29746944 -114039511 + MLT1G1 LTR MaLR 1 595 0 449 106 15 0 chr12 29747207 29747273 -114039182 + MSTD LTR MaLR 1 67 -329 553 151 53 22 chr12 29747298 29747448 -114039007 + MSTD LTR MaLR 208 396 0 927 302 69 58 chr12 29748115 29748595 -114037860 - L2 LINE L2 -8 3305 2821 272 264 22 0 chr12 29748600 29748691 -114037764 - L2 LINE L2 -1294 2020 1928 522 234 184 6 chr12 29748807 29749128 -114037327 + Charlie2 DNA MER1_type 2423 2800 -62 270 310 163 31 chr12 29750466 29750595 -114035860 + MIR SINE MIR 12 157 -105 21 0 0 0 chr12 29750685 29750706 -114035749 + AT_rich Low_complexity Low_complexity 1 21 0 2241 92 7 3 chr12 29752116 29752411 -114034044 + AluY SINE Alu 1 296 -15 772 300 22 9 chr12 29752899 29753129 -114033326 + MIR SINE MIR 5 237 -25 21 36 0 0 chr12 29753226 29753254 -114033201 + AT_rich Low_complexity Low_complexity 1 28 0 414 286 7 41 chr12 29754021 29754168 -114032287 - MLT1J LTR MaLR -94 417 276 200 188 0 0 chr12 29754999 29755031 -114031424 + L2 LINE L2 3214 3245 -27 1627 258 126 14 chr12 29755179 29755695 -114030760 + MER119 DNA MER1_type 7 580 -3 211 384 40 46 chr12 29755820 29755971 -114030484 - L2 LINE L2 -23 3249 3100 252 263 15 83 chr12 29756051 29756184 -114030271 - L2 LINE L2 -209 3063 2940 17731 173 55 16 chr12 29756990 29763785 -114022670 + L1M1 LINE L1 17 7081 -642 440 270 40 20 chr12 29764613 29764765 -114021690 + MIR SINE MIR 87 241 -21 2398 194 118 20 chr12 29767916 29768679 -114017776 + Charlie1 DNA MER1_type 1923 2760 -1 29 78 0 0 chr12 29769215 29769279 -114017176 + AT_rich Low_complexity Low_complexity 1 64 0 2288 267 74 41 chr12 29770571 29771452 -114015003 - L1M3d LINE L1 -4978 913 4 897 265 15 27 chr12 29772202 29772462 -114013993 - MIR SINE MIR 0 262 6 354 309 101 24 chr12 29772609 29772777 -114013678 - L2 LINE L2 -16 3297 3117 535 270 167 9 chr12 29772824 29773082 -114013373 + L1ME2 LINE L1 5862 6160 -10 592 282 102 4 chr12 29773140 29773385 -114013070 - L2 LINE L2 -887 2427 2159 1810 118 0 33 chr12 29774905 29775176 -114011279 - AluSg SINE Alu 0 310 49 327 345 104 48 chr12 29775455 29775811 -114010644 + L2 LINE L2 2809 3184 -88 243 275 47 107 chr12 29776174 29776323 -114010132 + L3 LINE CR1 987 1126 -451 396 349 62 17 chr12 29776600 29776841 -114009614 + MLT1K LTR MaLR 334 585 -3 241 317 117 0 chr12 29776874 29776994 -114009461 + MIR SINE MIR 49 182 -80 266 230 150 10 chr12 29777078 29777178 -114009277 + L3 LINE CR1 1149 1262 -315 243 210 92 59 chr12 29777184 29777303 -114009152 + L1MC4 LINE L1 6614 6736 -1306 1749 174 56 3 chr12 29777340 29777662 -114008793 - MER7A DNA MER2_type -9 337 1 198 188 0 0 chr12 29778263 29778295 -114008160 + L2 LINE L2 3214 3245 -27 521 74 12 25 chr12 29778562 29778643 -114007812 - L1P LINE L1 -4433 1713 1634 28298 55 0 2 chr12 29778643 29783029 -114003426 + L1PA5 LINE L1 1777 6154 0 369 158 248 40 chr12 29784668 29784769 -114001686 + MER20 DNA MER1_type 97 218 -1 687 259 81 0 chr12 29785387 29785572 -114000883 + MER46C DNA MER2_type 8 207 -131 322 307 89 39 chr12 29785861 29786118 -114000337 + L1ME4a LINE L1 5293 5562 -600 486 244 134 36 chr12 29786138 29786445 -114000010 + L1ME4a LINE L1 5607 5943 -178 38 0 0 0 chr12 29788234 29788272 -113998183 + AT_rich Low_complexity Low_complexity 1 38 0 210 210 49 12 chr12 29788290 29788371 -113998084 + (TA)n Simple_repeat Simple_repeat 2 85 0 2198 107 0 23 chr12 29788553 29788863 -113997592 - AluSx SINE Alu -9 303 1 2107 182 23 5 chr12 29789372 29789807 -113996648 - L1MB1 LINE L1 -1 6167 5725 401 194 231 22 chr12 29790241 29790375 -113996080 + MIR SINE MIR 97 258 -4 956 226 32 18 chr12 29792292 29792513 -113993942 + MER58A DNA MER1_type 1 224 0 283 306 0 27 chr12 29793295 29793406 -113993049 + MIR3 SINE MIR 98 205 -3 22 0 0 0 chr12 29795075 29795097 -113991358 + AT_rich Low_complexity Low_complexity 1 22 0 544 163 16 0 chr12 29795260 29795389 -113991066 + (TG)n Simple_repeat Simple_repeat 2 132 0 435 274 115 6 chr12 29796461 29796618 -113989837 - MIR SINE MIR -3 259 86 293 322 161 8 chr12 29798094 29798212 -113988243 + MIR SINE MIR 2 137 -125 1300 234 129 33 chr12 29798281 29798738 -113987717 + MLT1F1 LTR MaLR 67 567 0 21 0 0 0 chr12 29800351 29800372 -113986083 + AT_rich Low_complexity Low_complexity 1 21 0 1173 194 45 94 chr12 29800472 29800875 -113985580 - MLT1B LTR MaLR -7 383 1 1517 70 0 15 chr12 29800930 29801130 -113985325 - MER107 DNA MER1_type 0 197 1 1656 301 125 11 chr12 29801130 29801976 -113984479 + L2 LINE L2 2123 3066 -247 219 69 0 0 chr12 29802173 29802202 -113984253 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr12 29802489 29802510 -113983945 + AT_rich Low_complexity Low_complexity 1 21 0 355 349 0 0 chr12 29803951 29804077 -113982378 + L1ME LINE L1 4733 4858 -1288 295 267 22 83 chr12 29804132 29804312 -113982143 + L1ME LINE L1 5652 5749 -372 306 242 121 43 chr12 29804321 29804559 -113981896 + L1ME LINE L1 5510 5595 -526 509 252 8 16 chr12 29804998 29805121 -113981334 - L2 LINE L2 0 3313 3192 2027 146 0 3 chr12 29805841 29806136 -113980319 - AluSx SINE Alu -18 294 1 38 39 0 0 chr12 29807750 29807802 -113978653 + AT_rich Low_complexity Low_complexity 1 52 0 251 336 130 8 chr12 29807934 29808066 -113978389 + MIR SINE MIR 68 225 -37 29 47 0 0 chr12 29809474 29809517 -113976938 + AT_rich Low_complexity Low_complexity 1 43 0 253 266 211 23 chr12 29809517 29809645 -113976810 + L2 LINE L2 3162 3313 0 323 371 27 14 chr12 29810006 29810227 -113976228 - L2 LINE L2 -2891 423 200 859 277 137 17 chr12 29811329 29811788 -113974667 + L2 LINE L2 2199 2712 -602 737 224 88 5 chr12 29813109 29813301 -113973154 + MER3 DNA MER1_type 1 208 -1 284 315 140 0 chr12 29813896 29814039 -113972416 - MIR SINE MIR -15 247 85 555 251 153 6 chr12 29814914 29815097 -113971358 + MIR SINE MIR 34 243 -19 1736 108 100 0 chr12 29815221 29815480 -113970975 + AluSc SINE Alu 1 285 -24 216 0 0 0 chr12 29815676 29815700 -113970755 + (T)n Simple_repeat Simple_repeat 1 24 0 1964 115 70 16 chr12 29816728 29817042 -113969413 - THE1B LTR MaLR -33 331 1 237 278 19 0 chr12 29817863 29817917 -113968538 + MLT1I LTR MaLR 345 399 -10 2154 96 10 17 chr12 29819116 29819417 -113967038 + AluSq SINE Alu 1 299 -14 452 355 6 24 chr12 29819512 29819678 -113966777 + MER5A DNA MER1_type 1 163 -26 1611 169 40 3 chr12 29819966 29820291 -113966164 + L1MA7 LINE L1 5953 6289 -2 1248 141 19 0 chr12 29820298 29820511 -113965944 + L1MA3 LINE L1 6089 6305 0 218 178 0 100 chr12 29820520 29820610 -113965845 + A-rich Low_complexity Low_complexity 1 81 0 348 282 115 13 chr12 29820879 29821036 -113965419 - MIR3 SINE MIR -67 141 2 699 167 19 141 chr12 29822797 29823024 -113963431 + MSTD LTR MaLR 198 396 0 13376 49 9 2 chr12 29823305 29825113 -113961342 + L1P LINE L1 2678 4498 -1648 214 322 186 35 chr12 29825483 29825741 -113960714 - L2 LINE L2 -167 3105 2809 424 317 156 0 chr12 29825870 29826075 -113960380 - MIR SINE MIR -6 256 20 344 342 68 37 chr12 29826900 29827090 -113959365 + L3 LINE CR1 1370 1565 -12 377 283 25 45 chr12 29828608 29828806 -113957649 - L2 LINE L2 -200 3072 2879 555 262 18 6 chr12 29829024 29829192 -113957263 + MER45A DNA AcHobo 9 178 0 207 285 109 31 chr12 29829241 29829434 -113957021 - L2 LINE L2 -445 2869 2662 586 228 63 6 chr12 29829807 29829965 -113956490 + MER5A DNA MER1_type 1 167 -22 585 168 26 0 chr12 29831114 29831227 -113955228 + AluJb SINE Alu 189 304 -8 1917 167 57 19 chr12 29831227 29831593 -113954862 + MSTB LTR MaLR 47 426 0 219 287 171 31 chr12 29832530 29832659 -113953796 + L2 LINE L2 3167 3313 0 299 234 28 75 chr12 29834367 29834474 -113951981 - MIR SINE MIR -14 248 147 537 242 93 19 chr12 29834548 29834709 -113951746 - MIR SINE MIR -52 210 38 29 0 0 0 chr12 29835179 29835208 -113951247 + AT_rich Low_complexity Low_complexity 1 29 0 1952 158 21 0 chr12 29836276 29836656 -113949799 + L1MA1 LINE L1 5620 6007 -295 324 235 0 15 chr12 29836657 29836725 -113949730 + HAL1 LINE L1 1153 1219 -1288 265 264 101 23 chr12 29836848 29836977 -113949478 + HAL1 LINE L1 1377 1515 -992 1066 266 69 17 chr12 29836991 29837409 -113949046 + HAL1 LINE L1 1566 2005 -502 846 280 77 31 chr12 29837411 29837450 -113949005 + MLT1H LTR MaLR 140 176 -373 2191 125 0 3 chr12 29837450 29837762 -113948693 - AluSx SINE Alu -1 311 1 846 280 77 31 chr12 29837762 29838047 -113948408 + MLT1H LTR MaLR 176 479 -70 7225 201 75 28 chr12 29838048 29840089 -113946366 - Cheshire DNA MER1_type 0 2420 285 478 231 10 0 chr12 29840108 29840212 -113946243 - Cheshire DNA MER1_type -2313 107 3 228 170 38 0 chr12 29840220 29840273 -113946182 + MLT1H LTR MaLR 480 534 -15 274 297 7 45 chr12 29840289 29840444 -113946011 + HAL1 LINE L1 2156 2304 -203 559 177 26 0 chr12 29890728 29890841 -113895614 + AluJb SINE Alu 189 304 -8 2048 167 57 19 chr12 29890841 29891207 -113895248 + MSTB LTR MaLR 47 426 0 210 287 171 31 chr12 29892143 29892272 -113894183 + L2 LINE L2 3167 3313 0 452 282 28 77 chr12 29893874 29894055 -113892400 + MIR SINE MIR 11 182 -80 301 234 28 75 chr12 29894034 29894141 -113892314 - MIR SINE MIR -14 248 147 * 533 242 93 19 chr12 29894215 29894376 -113892079 - MIR SINE MIR -52 210 38 2017 110 21 21 chr12 29895235 29895526 -113890929 + AluSx SINE Alu 21 311 -1 482 274 116 7 chr12 29896489 29896635 -113889820 - MIR3 SINE MIR -17 191 30 345 353 133 0 chr12 29897074 29897224 -113889231 - L2 LINE L2 -4 3268 3099 613 274 63 31 chr12 29897290 29897513 -113888942 + MER20B DNA MER1_type 38 267 -516 1222 122 0 0 chr12 29897513 29897714 -113888741 - AluSg/x SINE Alu 0 327 127 2373 86 0 7 chr12 29897719 29898022 -113888433 - AluY SINE Alu -10 301 1 573 230 85 12 chr12 29898023 29898188 -113888267 + MER20B DNA MER1_type 258 434 -349 264 30 0 0 chr12 29899302 29899335 -113887120 + (TTTTTG)n Simple_repeat Simple_repeat 1 33 0 184 222 0 0 chr12 29900259 29900295 -113886160 - L2 LINE L2 -48 3224 3189 309 204 0 120 chr12 29901272 29901380 -113885075 + MLT1L LTR MaLR 193 287 -328 1092 208 93 28 chr12 29901650 29902009 -113884446 - L1MEc LINE L1 -2757 3458 3069 1357 224 29 45 chr12 29902009 29902389 -113884066 + MLT1A2 LTR MaLR 1 374 0 1092 208 93 28 chr12 29902389 29902428 -113884027 - L1MEc LINE L1 -3146 3069 3034 1393 231 148 7 chr12 29902431 29902973 -113883482 - L1MEc LINE L1 -3296 2919 2454 1797 176 14 43 chr12 29902973 29903185 -113883270 + L1PA15 LINE L1 5829 6029 -136 1845 174 0 29 chr12 29903185 29903501 -113882954 + AluSx SINE Alu 1 307 -5 1797 176 14 43 chr12 29903501 29903635 -113882820 + L1PA15 LINE L1 6029 6165 0 1393 231 148 7 chr12 29903635 29903727 -113882728 - L1MEc LINE L1 -3761 2454 2376 7770 20 0 0 chr12 29903727 29904754 -113881701 + L1PA3 LINE L1 5128 6154 -1 1393 231 148 7 chr12 29904754 29905143 -113881312 - L1MEc LINE L1 -3839 2376 1650 1208 203 33 61 chr12 29905169 29905499 -113880956 + MLT2D LTR ERVL 92 412 -2 415 237 29 36 chr12 29905539 29905678 -113880777 - L1MEc LINE L1 -6223 173 36 239 316 63 0 chr12 29906673 29906752 -113879703 + L2 LINE L2 3227 3310 -3 2386 80 0 10 chr12 29906993 29907306 -113879149 + AluY SINE Alu 1 310 -1 1082 246 3 42 chr12 29907559 29907844 -113878611 + MER93b LTR ERV1 98 371 -2 1813 182 30 43 chr12 29907885 29908280 -113878175 + MLT1B LTR MaLR 1 390 0 303 330 46 29 chr12 29908290 29908463 -113877992 + MER20B DNA MER1_type 2 177 -606 878 273 49 33 chr12 29909581 29909831 -113876624 - L1MEc LINE L1 -4102 2294 2033 1768 90 144 10 chr12 29909831 29910143 -113876312 - L1MA3 LINE L1 0 6305 5952 878 273 49 33 chr12 29910143 29910317 -113876138 - L1MEc LINE L1 -4363 2033 1863 * 3020 241 61 18 chr12 29910313 29911644 -113874811 - L1ME1 LINE L1 -27 6139 4767 1879 278 98 22 chr12 29911640 29912628 -113873827 - L1MEc LINE L1 -4524 1872 810 * 3596 174 38 6 chr12 29912661 29913339 -113873116 - L1MC3 LINE L1 -21 7764 7065 2663 257 20 14 chr12 29913379 29914088 -113872367 - L1MEc LINE L1 -5652 744 32 669 134 0 0 chr12 29915155 29915252 -113871203 + FLAM_C SINE Alu 21 117 -26 240 59 0 0 chr12 29915252 29915286 -113871169 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 320 0 25 0 chr12 29915293 29915333 -113871122 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 1427 218 13 13 chr12 29915335 29915638 -113870817 + AluJo SINE Alu 3 305 -7 2245 149 142 0 chr12 29918310 29918725 -113867730 - MER101 LTR ERV1 0 474 1 333 333 103 0 chr12 29919167 29919341 -113867114 - MIR SINE MIR -65 197 6 2313 176 83 16 chr12 29921179 29921730 -113864725 - Charlie1a DNA MER1_type 0 1455 868 1691 251 55 31 chr12 29921786 29922336 -113864119 - Charlie1a DNA MER1_type -892 563 1 191 284 64 64 chr12 29922676 29922785 -113863670 + L3 LINE CR1 1447 1555 -22 180 0 0 0 chr12 29923407 29923427 -113863028 + (CATATA)n Simple_repeat Simple_repeat 5 24 0 28 0 0 0 chr12 29923832 29923860 -113862595 + AT_rich Low_complexity Low_complexity 1 28 0 5087 79 6 0 chr12 29925099 29925771 -113860684 + L1PA7 LINE L1 5479 6154 0 1504 109 73 44 chr12 29926453 29926585 -113859870 - Tigger2 DNA MER2_type -102 2616 2489 2336 117 0 0 chr12 29926585 29926893 -113859562 + AluSx SINE Alu 1 308 -4 1504 109 73 44 chr12 29926893 29927035 -113859420 - Tigger2 DNA MER2_type -229 2489 2334 677 207 0 0 chr12 29927062 29927173 -113859282 + Tigger2 DNA MER2_type 2592 2702 -16 378 0 0 0 chr12 29927173 29927215 -113859240 + (CA)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr12 29927215 29927239 -113859216 + AT_rich Low_complexity Low_complexity 1 24 0 282 328 72 40 chr12 29928143 29928268 -113858187 - L2 LINE L2 -1 3271 3143 24 32 0 0 chr12 29928746 29928777 -113857678 + AT_rich Low_complexity Low_complexity 1 31 0 294 356 111 19 chr12 29928795 29929011 -113857444 + MIR SINE MIR 20 255 -7 278 283 87 51 chr12 29929205 29929343 -113857112 - MIR SINE MIR -63 145 3 1805 159 12 77 chr12 29930536 29930950 -113855505 + MLT1B LTR MaLR 4 390 0 662 303 45 5 chr12 29930957 29931178 -113855277 - MIR SINE MIR -13 249 20 1804 141 25 0 chr12 29932309 29932609 -113853846 + AluSx SINE Alu 1 307 0 354 314 98 58 chr12 29933514 29933788 -113852667 - HAL1 LINE L1 -910 1597 1313 11012 140 28 60 chr12 29934140 29934461 -113851994 - Tigger1 DNA MER2_type -310 2108 1778 2270 84 3 7 chr12 29934461 29934760 -113851695 - AluY SINE Alu -2 309 12 11012 140 28 60 chr12 29934760 29936617 -113849838 - Tigger1 DNA MER2_type -640 1778 1 411 319 51 7 chr12 29936650 29936788 -113849667 - MER5B DNA MER1_type -11 167 24 353 385 62 5 chr12 29937491 29937686 -113848769 - MIR SINE MIR -55 207 2 302 213 67 0 chr12 29938938 29939013 -113847442 + LTR33 LTR ERVL 10 89 -432 228 191 60 24 chr12 29939179 29939263 -113847192 - Charlie5 DNA MER1_type -160 2452 2366 885 358 22 25 chr12 29939316 29939760 -113846695 + L1M3c LINE L1 174 616 -5697 2162 231 114 33 chr12 29939969 29941081 -113845374 + L1M3c LINE L1 910 1872 -4512 680 156 127 12 chr12 29941193 29941366 -113845089 - Charlie5 DNA MER1_type -2419 193 1 26 0 0 0 chr12 29942416 29942442 -113844013 + AT_rich Low_complexity Low_complexity 1 26 0 291 285 31 23 chr12 29942480 29942610 -113843845 + L1ME4a LINE L1 5952 6082 -39 23 0 0 0 chr12 29942688 29942711 -113843744 + AT_rich Low_complexity Low_complexity 1 23 0 180 111 0 0 chr12 29943542 29943569 -113842886 + (TG)n Simple_repeat Simple_repeat 2 28 0 565 212 120 50 chr12 29943919 29944495 -113841960 + LTR48 LTR ERV1 5 542 0 688 305 156 35 chr12 29945118 29945830 -113840625 + HAL1 LINE L1 1127 1924 -583 200 195 0 0 chr12 29945975 29946016 -113840439 + GA-rich Low_complexity Low_complexity 4 44 0 510 242 78 7 chr12 29946694 29946764 -113839691 + MER69A DNA AcHobo 14 78 -2448 441 0 0 0 chr12 29946764 29946813 -113839642 + (CA)n Simple_repeat Simple_repeat 2 50 0 510 242 78 7 chr12 29946813 29946895 -113839560 + MER69A DNA AcHobo 78 177 0 37 52 0 0 chr12 29947798 29947856 -113838599 + AT_rich Low_complexity Low_complexity 1 58 0 322 302 21 0 chr12 29948093 29948189 -113838266 + MIR SINE MIR 49 146 -62 622 229 22 71 chr12 29948203 29948386 -113838069 + MER5A DNA MER1_type 4 177 -12 410 296 177 22 chr12 29948657 29948883 -113837572 + MIR SINE MIR 2 262 0 26 30 0 0 chr12 29948883 29948916 -113837539 + AT_rich Low_complexity Low_complexity 1 33 0 839 256 80 4 chr12 29949421 29949683 -113836772 + MER99 DNA DNA 546 827 -1 585 243 99 39 chr12 29949875 29950159 -113836296 - LTR43 LTR ERV1 -148 454 154 210 358 37 0 chr12 29950877 29950958 -113835497 - L2 LINE L2 -257 3015 2932 245 400 44 7 chr12 29951383 29951518 -113834937 - L2 LINE L2 -12 3260 3121 336 314 76 0 chr12 29952109 29952227 -113834228 - MIR3 SINE MIR -52 156 30 214 194 31 71 chr12 29952947 29953045 -113833410 + CT-rich Low_complexity Low_complexity 3 96 0 252 196 0 0 chr12 29953045 29953091 -113833364 - L2 LINE L2 -24 3248 3203 280 329 0 0 chr12 29953298 29953368 -113833087 + MIR SINE MIR 1 70 -192 6714 270 60 41 chr12 29953746 29954322 -113832133 - L1M1 LINE L1 -3899 2833 2269 2173 104 0 4 chr12 29954322 29954600 -113831855 - AluSc SINE Alu -32 277 1 6714 270 60 41 chr12 29954600 29957463 -113828992 - L1M1 LINE L1 -4463 2269 2 240 240 73 9 chr12 29957874 29957993 -113828462 - L1MC/D LINE L1 -485 5636 5573 329 286 232 14 chr12 29958420 29958640 -113827815 + L3 LINE CR1 1306 1573 -4 374 222 46 19 chr12 29958644 29958752 -113827703 - MIR SINE MIR -6 256 146 38 22 0 0 chr12 29959201 29959246 -113827209 + AT_rich Low_complexity Low_complexity 1 45 0 375 202 0 0 chr12 29960581 29960665 -113825790 + (TA)n Simple_repeat Simple_repeat 1 84 0 456 192 16 8 chr12 29961352 29961529 -113824926 - MLT1C LTR MaLR 0 467 241 363 295 44 9 chr12 29962450 29962677 -113823778 + L1M3 LINE L1 4430 4664 -1482 14908 176 21 24 chr12 29962934 29966964 -113819491 + L1MA3 LINE L1 2288 6305 0 22 0 0 0 chr12 29966964 29966986 -113819469 + AT_rich Low_complexity Low_complexity 1 22 0 226 261 76 22 chr12 29967322 29967414 -113819041 + L1M3 LINE L1 5349 5445 -723 285 254 127 34 chr12 29967513 29967718 -113818737 + L1ME LINE L1 5562 5785 -336 1097 259 87 19 chr12 29967723 29968093 -113818362 - MLT1I LTR MaLR -9 400 6 359 202 0 40 chr12 29968207 29968306 -113818149 + L1MB8 LINE L1 6084 6178 0 268 355 0 16 chr12 29968582 29968703 -113817752 + LTR16C LTR ERVL 363 481 -10 200 340 0 0 chr12 29968854 29968904 -113817551 + L2 LINE L2 3195 3244 -28 328 206 0 15 chr12 29969684 29969752 -113816703 + LTR67 LTR ERVL 450 516 -41 4585 100 7 7 chr12 29970269 29970956 -113815499 + L1PB1 LINE L1 5464 6150 -1 1915 224 54 9 chr12 29971270 29971712 -113814743 + MLT1C LTR MaLR 6 467 0 544 139 0 0 chr12 29972395 29972481 -113813974 + AluS SINE Alu 1 86 -227 225 94 0 0 chr12 29972773 29972805 -113813650 + (TAG)n Simple_repeat Simple_repeat 1 32 0 685 271 33 0 chr12 29972834 29973015 -113813440 - MIR SINE MIR -5 257 71 1384 140 3 8 chr12 29973038 29973354 -113813101 + THE1B LTR MaLR 1 364 0 207 325 138 69 chr12 29975048 29975208 -113811247 - MIR SINE MIR 0 262 92 772 240 80 22 chr12 29976122 29976347 -113810108 - MIR SINE MIR 0 262 25 188 193 18 35 chr12 29976422 29976479 -113809976 + MIR SINE MIR 99 154 -108 219 88 0 0 chr12 29977468 29977502 -113808953 + (CAGG)n Simple_repeat Simple_repeat 4 37 0 2143 114 13 0 chr12 29978687 29978994 -113807461 + AluSx SINE Alu 1 311 -1 473 319 55 6 chr12 29979368 29979550 -113806905 - MIR SINE MIR -52 210 20 2137 168 92 10 chr12 29980753 29981164 -113805291 - Tigger2 DNA MER2_type -1 2717 2273 406 145 14 14 chr12 29981154 29981223 -113805232 - Tigger2 DNA MER2_type -2649 69 1 * 2229 123 0 0 chr12 29981299 29981599 -113804856 + AluSx SINE Alu 1 300 -12 543 173 29 0 chr12 29981635 29981739 -113804716 - MLT1I LTR MaLR 0 409 303 22 0 0 0 chr12 29982953 29982975 -113803480 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr12 29983140 29983164 -113803291 + (TG)n Simple_repeat Simple_repeat 1 24 0 16500 36 0 0 chr12 29985342 29987436 -113799019 + L1PA5 LINE L1 3397 5490 -664 2390 31 0 3 chr12 29987436 29987719 -113798736 + L1PA5 LINE L1 5859 6146 -8 768 273 5 0 chr12 29988052 29988239 -113798216 - MER5A DNA MER1_type 0 189 2 796 259 19 13 chr12 29989161 29989477 -113796978 - L1MEc LINE L1 -1511 4704 4387 701 291 88 33 chr12 29989483 29989882 -113796573 + LTR52 LTR ERVL 1 421 0 746 267 76 15 chr12 29989884 29990214 -113796241 - L1MEc LINE L1 -1831 4384 4035 8796 181 23 38 chr12 29990215 29994201 -113792254 - L1P3 LINE L1 -1063 5398 10 1802 261 107 16 chr12 29994209 29995248 -113791207 - L1MEc LINE L1 -2358 3857 2627 1237 242 132 47 chr12 29995251 29995332 -113791123 - LTR40a LTR ERVL 0 519 446 1457 213 49 36 chr12 29995332 29995717 -113790738 - MLT1B LTR MaLR 0 390 1 1237 242 132 47 chr12 29995717 29996081 -113790374 - LTR40a LTR ERVL -73 446 36 600 268 0 7 chr12 29996101 29996243 -113790212 + MER45A DNA AcHobo 38 178 0 856 277 123 31 chr12 29996317 29997264 -113789191 - L1MEc LINE L1 -3594 2621 1627 1700 181 28 3 chr12 29997364 29997689 -113788766 - L1MA8 LINE L1 -183 7527 7195 501 65 83 24 chr12 29997695 29997863 -113788592 + (TA)n Simple_repeat Simple_repeat 1 178 0 612 63 66 38 chr12 29997889 29998399 -113788056 + (TA)n Simple_repeat Simple_repeat 1 524 0 776 145 7 14 chr12 29998425 29998563 -113787892 - L1MA8 LINE L1 -487 7223 7087 * 11509 190 19 14 chr12 29998561 30001178 -113785277 - L1MA8 LINE L1 -743 6822 4252 624 189 7 52 chr12 30001186 30001339 -113785116 - L1MA8 LINE L1 -4107 3458 3313 350 148 0 38 chr12 30001367 30001577 -113784878 + AluJb SINE Alu 4 294 -8 21 0 0 0 chr12 30001664 30001685 -113784770 + AT_rich Low_complexity Low_complexity 1 21 0 2290 114 0 0 chr12 30001729 30002036 -113784419 + AluSc SINE Alu 3 309 0 6215 89 11 0 chr12 30002083 30003649 -113782806 - L1PA8A LINE L1 -13 6118 4547 2460 18 0 0 chr12 30003652 30003931 -113782524 - L1P1 LINE L1 -376 5779 5501 25 31 0 0 chr12 30003946 30003978 -113782477 + AT_rich Low_complexity Low_complexity 1 32 0 849 282 82 31 chr12 30003987 30005034 -113781421 + L1M4 LINE L1 4333 5437 -741 * 1378 189 164 6 chr12 30005028 30005345 -113781110 - L1MCa LINE L1 -6040 386 20 459 312 87 14 chr12 30006148 30006424 -113780031 - L1ME LINE L1 -434 5728 5433 * 10326 210 65 28 chr12 30006423 30008689 -113777766 + L1MC1 LINE L1 386 2566 -4047 1619 189 33 7 chr12 30008689 30008991 -113777464 + AluSx SINE Alu 3 312 0 10326 210 65 28 chr12 30008991 30012532 -113773923 + L1MC1 LINE L1 2566 6442 -171 814 306 92 48 chr12 30012664 30013118 -113773337 + L2 LINE L2 918 1391 -1923 242 321 117 43 chr12 30013085 30013247 -113773208 + L2 LINE L2 3104 3277 -36 * 340 351 37 43 chr12 30013805 30014104 -113772351 + L1MEc LINE L1 975 1271 -5554 414 268 129 28 chr12 30014134 30014685 -113771770 + L1MEc LINE L1 1280 1943 -4882 2168 266 50 29 chr12 30014691 30015721 -113770734 + L1M2 LINE L1 1638 2689 -4160 20591 158 10 20 chr12 30015753 30020567 -113765888 + L1P3 LINE L1 6 4841 -1620 246 32 0 0 chr12 30020596 30020627 -113765828 + (TAA)n Simple_repeat Simple_repeat 3 33 0 29305 42 7 2 chr12 30020635 30025073 -113761382 - HAL1b LINE L1 -23 6132 316 819 284 95 20 chr12 30025450 30026010 -113760445 - L1M4 LINE L1 -2180 3966 3341 262 300 0 0 chr12 30027067 30027137 -113759318 + MIR3 SINE MIR 139 208 0 200 313 0 20 chr12 30027324 30027423 -113759032 + T-rich Low_complexity Low_complexity 6 102 0 198 328 0 0 chr12 30027626 30027687 -113758768 + MIR SINE MIR 144 204 -58 22 35 0 0 chr12 30027877 30027906 -113758549 + AT_rich Low_complexity Low_complexity 1 29 0 566 330 38 38 chr12 30029252 30029652 -113756803 - L1MC/D LINE L1 -2028 5780 5381 381 354 139 11 chr12 30029807 30030254 -113756201 - L1MC/D LINE L1 -1071 5075 4572 370 268 110 83 chr12 30030404 30030765 -113755690 - MLT1J2 LTR MaLR -78 368 22 378 355 144 10 chr12 30031730 30032231 -113754224 + L2 LINE L2 2222 2789 -525 3115 158 66 34 chr12 30032396 30032416 -113754039 - L1MC2 LINE L1 -1 6343 6325 2338 86 3 3 chr12 30032416 30032719 -113753736 + AluSp SINE Alu 4 306 -7 3115 158 66 34 chr12 30032719 30032953 -113753502 - L1MC2 LINE L1 -19 6325 6100 2019 134 45 25 chr12 30032953 30033310 -113753145 - THE1B LTR MaLR 0 364 1 3115 158 66 34 chr12 30033310 30033705 -113752750 - L1MC2 LINE L1 -244 6100 5672 2665 142 5 27 chr12 30033707 30034145 -113752310 - MSTA LTR MaLR 0 428 1 216 411 115 21 chr12 30034247 30034490 -113751965 - L2 LINE L2 -4 3268 3003 399 256 72 40 chr12 30034752 30034877 -113751578 + L2 LINE L2 3180 3308 -5 233 274 102 13 chr12 30035918 30036075 -113750380 + HAL1 LINE L1 1005 1175 -1332 650 274 35 55 chr12 30036154 30036464 -113749991 + HAL1 LINE L1 1670 1973 -534 1066 246 91 27 chr12 30036504 30036881 -113749574 - MLT2E LTR ERVL -8 620 171 1827 171 125 18 chr12 30036881 30037266 -113749189 + MSTA LTR MaLR 1 426 -2 1066 246 91 27 chr12 30037266 30037449 -113749006 - MLT2E LTR ERVL -457 171 1 316 276 94 18 chr12 30037648 30037818 -113748637 + HAL1 LINE L1 2040 2222 -285 1885 109 11 4 chr12 30037822 30038087 -113748368 - AluSx SINE Alu -41 271 5 496 248 9 0 chr12 30039269 30039378 -113747077 - MER81 DNA DNA -4 110 1 621 0 83 0 chr12 30039829 30039938 -113746517 + (TA)n Simple_repeat Simple_repeat 1 118 0 2665 148 21 48 chr12 30140876 30141466 -113644989 + MER51A LTR ERV1 1 634 0 2552 155 141 34 chr12 30141582 30142137 -113644318 - LTR18B LTR ERVL 0 614 1 9728 159 22 1 chr12 30142291 30143911 -113642544 - HERVL18 LTR ERVL 0 6047 4394 3696 186 3 3 chr12 30143913 30144541 -113641914 - HERVL18 LTR ERVL -2468 3579 2952 1103 235 4 6 chr12 30144555 30144837 -113641618 - HERVL18 LTR ERVL -2971 3076 2720 * 8444 164 5 7 chr12 30144836 30146290 -113640165 - HERVL18 LTR ERVL -3595 2452 939 1550 164 11 4 chr12 30146327 30146595 -113639860 - HERVL18 LTR ERVL -5774 273 4 2341 142 195 45 chr12 30146628 30147162 -113639293 - LTR18B LTR ERVL 0 614 1 825 305 65 11 chr12 30147170 30147524 -113638931 + MLT1K LTR MaLR 216 588 0 255 220 0 0 chr12 30147847 30147897 -113638558 - MER52-int LTR ERV1 -179 6912 6863 316 143 16 16 chr12 30147997 30148060 -113638395 - LTR9 LTR ERV1 -549 63 1 289 250 0 0 chr12 30148096 30148152 -113638303 + MER2 DNA MER2_type 290 345 0 1444 285 111 41 chr12 30148167 30149686 -113636769 - L1MEc LINE L1 -4549 1666 92 520 55 96 0 chr12 30149716 30149789 -113636666 + MADE1 DNA Mariner 1 80 0 1769 217 46 63 chr12 30149856 30150284 -113636171 + LTR40a LTR ERVL 1 420 -99 2440 84 7 0 chr12 30150284 30150592 -113635863 - AluY SINE Alu -1 310 1 1769 217 46 63 chr12 30150592 30150688 -113635767 + LTR40a LTR ERVL 420 516 -3 331 288 201 22 chr12 30150757 30150941 -113635514 - MIR SINE MIR 0 262 46 2519 186 67 37 chr12 30151879 30152378 -113634077 + MLT2B3 LTR ERVL 1 519 -35 749 49 10 0 chr12 30152378 30152480 -113633975 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 2519 186 67 37 chr12 30152480 30152518 -113633937 + MLT2B3 LTR ERVL 519 554 0 22 35 0 0 chr12 30154009 30154038 -113632417 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr12 30154337 30154361 -113632094 + AT_rich Low_complexity Low_complexity 1 24 0 610 154 31 154 chr12 30155359 30155498 -113630957 + MER3 DNA MER1_type 2 104 -105 647 216 0 0 chr12 30155498 30155623 -113630832 - FLAM_C SINE Alu -7 126 2 610 154 31 154 chr12 30155623 30155710 -113630745 + MER3 DNA MER1_type 104 200 -9 279 288 129 30 chr12 30155899 30156031 -113630424 - MIR SINE MIR -34 228 84 201 121 0 0 chr12 30156056 30156089 -113630366 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 376 271 72 58 chr12 30156659 30156950 -113629505 - L1MC/D LINE L1 -2163 5645 5351 933 186 26 26 chr12 30157668 30157862 -113628593 + MER51D LTR ERV1 464 657 0 317 146 0 0 chr12 30158635 30158683 -113627772 + MER34-int LTR ERV1 728 775 -7041 466 309 34 15 chr12 30158809 30159104 -113627351 + MER34-int LTR ERV1 1544 1625 -5051 281 111 42 69 chr12 30159560 30159632 -113626823 + MER34-int LTR ERV1 1722 1791 -6329 1213 188 87 58 chr12 30159717 30160309 -113626146 + MER34-int LTR ERV1 1772 4170 -2506 564 235 13 7 chr12 30160576 30160725 -113625730 + MER34-int LTR ERV1 7667 7816 0 1059 157 10 25 chr12 30161064 30161261 -113625194 + MER51D LTR ERV1 464 657 0 285 254 110 51 chr12 30161815 30161933 -113624522 + MIR SINE MIR 134 258 -4 657 188 6 56 chr12 30162045 30162205 -113624250 - LTR32 LTR ERVL -1 470 319 498 152 0 0 chr12 30162259 30162338 -113624117 - LTR32 LTR ERVL -379 92 14 889 93 7 22 chr12 30162667 30162806 -113623649 + AluY SINE Alu 175 311 0 861 215 23 6 chr12 30163192 30163369 -113623086 - MER5A DNA MER1_type -9 180 1 27 73 0 0 chr12 30164759 30164814 -113621641 + AT_rich Low_complexity Low_complexity 1 55 0 188 281 24 49 chr12 30166455 30166537 -113619918 + MIR SINE MIR 58 137 -71 1672 198 55 38 chr12 30166584 30167060 -113619395 + Charlie1b DNA MER1_type 33 516 -7 255 260 0 39 chr12 30167223 30167300 -113619155 - MER5B DNA MER1_type 0 178 105 699 174 11 45 chr12 30168372 30168550 -113617905 - L1MB8 LINE L1 0 6178 6007 342 310 76 6 chr12 30168597 30168755 -113617700 + MER34 LTR ERV1 2 170 -372 789 208 74 27 chr12 30168794 30169070 -113617385 + MER39 LTR ERV1 304 526 -16 198 0 0 0 chr12 30169070 30169092 -113617363 + (A)n Simple_repeat Simple_repeat 1 22 0 968 140 124 28 chr12 30169312 30169562 -113616893 - L1MB8 LINE L1 -197 5981 5708 303 266 147 18 chr12 30169784 30169893 -113616562 - MIR3 SINE MIR -1 207 85 571 151 158 22 chr12 30170285 30170424 -113616031 - MER31B LTR ERV1 -307 159 2 501 261 12 118 chr12 30170678 30170923 -113615532 - MIR SINE MIR -13 249 31 1549 192 0 54 chr12 30172599 30172912 -113613543 + AluJb SINE Alu 1 296 -16 554 248 102 6 chr12 30172954 30173111 -113613344 + MIR SINE MIR 91 262 0 463 290 115 37 chr12 30173621 30173838 -113612617 + MIR SINE MIR 29 262 0 1705 56 0 5 chr12 30175591 30175807 -113610648 + L1PA5 LINE L1 5940 6154 0 30 59 0 0 chr12 30176051 30176102 -113610353 + AT_rich Low_complexity Low_complexity 1 51 0 1836 178 0 0 chr12 30176246 30176550 -113609905 - AluSx SINE Alu -8 304 1 569 268 105 86 chr12 30177243 30177605 -113608850 - L2 LINE L2 -1 3312 2944 1136 276 87 83 chr12 30177635 30178570 -113607885 - L2 LINE L2 -43 3270 2310 881 343 107 22 chr12 30178571 30179218 -113607237 - L2 LINE L2 -382 2932 2231 284 328 46 23 chr12 30179252 30179383 -113607072 - L2 LINE L2 -1670 1644 1511 347 314 57 8 chr12 30179431 30179555 -113606900 - L2 LINE L2 -1 3271 3142 1069 358 160 26 chr12 30180143 30180451 -113606004 + L2 LINE L2 335 600 -2672 360 119 0 0 chr12 30180451 30180510 -113605945 + (CA)n Simple_repeat Simple_repeat 2 60 0 1069 358 160 26 chr12 30180510 30182489 -113603966 + L2 LINE L2 600 3055 -217 21 0 0 0 chr12 30182540 30182561 -113603894 + AT_rich Low_complexity Low_complexity 1 21 0 397 211 33 0 chr12 30182664 30182754 -113603701 - MIR SINE MIR 0 262 170 287 217 205 12 chr12 30182770 30182853 -113603602 + L2 LINE L2 3169 3267 -5 1558 138 54 0 chr12 30183560 30183857 -113602598 + L1MA6 LINE L1 5988 6300 0 1777 147 42 66 chr12 30184052 30184433 -113602022 - THE1C LTR MaLR -3 372 1 5768 180 66 28 chr12 30184862 30186263 -113600192 + Charlie1a DNA MER1_type 1 1454 -1 463 138 11 11 chr12 30186485 30186572 -113599883 - MLT1E1 LTR MaLR 0 654 568 783 194 156 84 chr12 30186592 30186912 -113599543 - MLT1E1 LTR MaLR -308 346 4 279 0 0 0 chr12 30187115 30187146 -113599309 + (TG)n Simple_repeat Simple_repeat 2 32 0 2279 122 3 0 chr12 30188464 30188767 -113597688 - AluSx SINE Alu -8 304 1 223 284 12 25 chr12 30188854 30188935 -113597520 + (TATG)n Simple_repeat Simple_repeat 4 83 0 226 299 158 31 chr12 30190455 30190582 -113595873 + MIR SINE MIR 11 153 -109 2634 181 25 11 chr12 30190584 30191132 -113595323 - MER89 LTR ERV1 0 559 4 309 281 0 0 chr12 30191594 30191658 -113594797 + L2 LINE L2 3186 3249 -23 261 0 0 0 chr12 30191665 30191694 -113594761 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2336 82 0 3 chr12 30192648 30192942 -113593513 - AluSc SINE Alu -16 293 1 387 280 32 48 chr12 30192950 30193075 -113593380 - MIR SINE MIR -91 171 49 238 208 19 142 chr12 30193120 30193226 -113593229 + MER5A DNA MER1_type 96 188 -1 196 382 20 10 chr12 30193226 30193323 -113593132 + L2 LINE L2 2571 2668 -646 23 54 0 0 chr12 30193723 30193760 -113592695 + AT_rich Low_complexity Low_complexity 1 37 0 8703 51 2 7 chr12 30195911 30196988 -113589467 - MER11C LTR ERVK 0 1071 1 369 352 7 28 chr12 30197562 30197704 -113588751 + MER5A DNA MER1_type 49 187 -2 188 115 250 0 chr12 30197736 30197788 -113588667 - L2 LINE L2 0 3313 3249 195 352 69 60 chr12 30197994 30198176 -113588279 - MIR SINE MIR -64 144 9 5109 180 21 5 chr12 30198475 30199445 -113587010 + ERVL-D LTR ERVL 1377 2361 -3403 5857 138 42 9 chr12 30199447 30200472 -113585983 + ERVL-D LTR ERVL 4699 5757 -7 1727 198 22 14 chr12 30200472 30200835 -113585620 + MLT2D LTR ERVL 1 366 -48 354 148 22 44 chr12 30200837 30201020 -113585435 + (TCTA)n Simple_repeat Simple_repeat 1 179 0 378 74 0 0 chr12 30201038 30201092 -113585363 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 252 111 56 19 chr12 30201129 30201183 -113585272 + MLT2D LTR ERVL 465 520 0 242 255 39 0 chr12 30201505 30201556 -113584899 + L2 LINE L2 3212 3264 -8 600 236 31 0 chr12 30202034 30202161 -113584294 - FLAM_A SINE Alu -2 131 1 2253 98 7 3 chr12 30202332 30202629 -113583826 + AluSx SINE Alu 1 298 -14 1581 175 40 67 chr12 30202729 30203130 -113583325 - MLT1B LTR MaLR 0 390 1 1278 137 0 0 chr12 30203275 30203458 -113582997 - AluSp SINE Alu -1 312 130 2058 142 0 7 chr12 30203524 30203834 -113582621 - AluSx SINE Alu -4 308 1 1659 165 0 8 chr12 30203858 30204124 -113582331 - AluJo SINE Alu -22 290 27 4427 117 286 97 chr12 30204125 30205548 -113580907 + pTR5 LTR ERV1 745 2436 -2 2193 109 0 35 chr12 30205724 30206036 -113580419 + AluSx SINE Alu 1 301 -11 764 223 13 65 chr12 30206802 30207031 -113579424 + MER20 DNA MER1_type 2 218 -1 299 164 66 0 chr12 30207387 30207448 -113579007 + L2 LINE L2 3232 3296 -17 25 51 0 0 chr12 30207721 30207760 -113578695 + AT_rich Low_complexity Low_complexity 1 39 0 344 115 0 0 chr12 30207835 30207887 -113578568 - MADE1 DNA Mariner -26 54 3 10743 157 119 33 chr12 30208174 30210011 -113576444 + L1MA3 LINE L1 966 2644 -5080 2134 115 3 3 chr12 30210011 30210328 -113576127 + AluSp SINE Alu 1 317 0 10743 157 119 33 chr12 30210328 30212155 -113574300 + L1MA3 LINE L1 2644 4313 -3411 623 171 0 57 chr12 30212155 30212322 -113574133 + FLAM_C SINE Alu 1 160 0 10743 157 119 33 chr12 30212322 30214464 -113571991 + L1MA3 LINE L1 4313 7722 -2 910 239 32 5 chr12 30214956 30215174 -113571281 - MIR SINE MIR -2 260 37 357 237 132 53 chr12 30215508 30215698 -113570757 + L2 LINE L2 3107 3311 -2 8382 65 10 2 chr12 30216364 30217426 -113569029 - MER11C LTR ERVK 0 1071 1 634 350 103 18 chr12 30217538 30217926 -113568529 + L2 LINE L2 2848 3268 -4 738 276 67 28 chr12 30219397 30219649 -113566806 - MIR SINE MIR -2 260 3 7023 159 16 35 chr12 30219769 30220492 -113565963 - L1P3 LINE L1 -4472 1989 1254 186 71 0 0 chr12 30220492 30220520 -113565935 + (TTG)n Simple_repeat Simple_repeat 3 30 0 7023 159 16 35 chr12 30220520 30221710 -113564745 - L1P3 LINE L1 -5207 1254 56 4184 26 18 0 chr12 30221716 30222215 -113564240 - L1PA4 LINE L1 -2 6153 5646 2522 84 119 7 chr12 30222215 30222618 -113563837 + LTR7 LTR ERV1 1 448 -2 645 54 32 0 chr12 30222620 30222713 -113563742 + HERVH LTR ERV1 1 96 -7617 2674 80 120 0 chr12 30222729 30223129 -113563326 - LTR7 LTR ERV1 -2 448 1 1132 0 0 0 chr12 30223129 30223257 -113563198 - L1P1 LINE L1 -505 5650 5523 356 147 0 15 chr12 30223255 30223323 -113563132 - L1P3 LINE L1 -5806 69 3 * 363 123 0 18 chr12 30223605 30223662 -113562793 + MER5A DNA MER1_type 1 56 -133 448 308 34 7 chr12 30223677 30223823 -113562632 + MIR SINE MIR 11 160 -102 22 35 0 0 chr12 30224431 30224460 -113561995 + AT_rich Low_complexity Low_complexity 1 29 0 227 170 38 0 chr12 30224508 30224561 -113561894 + (TA)n Simple_repeat Simple_repeat 2 56 0 436 123 0 0 chr12 30224561 30224626 -113561829 + Alu SINE Alu 236 300 -10 2215 95 0 7 chr12 30224644 30224938 -113561517 - AluSg SINE Alu -18 292 1 337 265 8 98 chr12 30225067 30225199 -113561256 - L2 LINE L2 -13 3259 3140 1838 187 13 0 chr12 30225586 30225891 -113560564 - AluJo SINE Alu -1 311 3 34 72 0 0 chr12 30225891 30225960 -113560495 + AT_rich Low_complexity Low_complexity 1 69 0 1462 190 3 39 chr12 30226005 30226310 -113560145 - AluJo SINE Alu -18 294 1 294 330 10 0 chr12 30227446 30227549 -113558906 + MIR SINE MIR 87 190 -72 2270 108 0 0 chr12 30227591 30227887 -113558568 - AluSx SINE Alu -16 296 1 882 262 99 30 chr12 30228232 30228625 -113557830 - MLT1J1 LTR MaLR -24 422 3 338 296 12 0 chr12 30229434 30229515 -113556940 - L2 LINE L2 0 3272 3191 505 237 105 18 chr12 30230711 30230930 -113555525 + L1ME4a LINE L1 5685 5922 -199 2501 32 0 0 chr12 30232494 30232803 -113553652 - AluY SINE Alu 0 309 1 413 79 0 16 chr12 30233189 30233252 -113553203 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 2146 106 14 0 chr12 30233301 30233583 -113552872 + AluSc SINE Alu 1 286 -23 410 36 18 0 chr12 30233715 30233771 -113552684 + (CA)n Simple_repeat Simple_repeat 2 58 0 211 367 143 23 chr12 30233920 30234053 -113552402 - MIR3 SINE MIR -113 95 2 350 282 19 39 chr12 30234640 30234743 -113551712 - MIR SINE MIR -88 120 20 302 322 40 51 chr12 30234751 30234928 -113551527 + MER5B DNA MER1_type 1 175 -3 7049 124 11 5 chr12 30236594 30237826 -113548629 + L1MA1 LINE L1 4384 5631 -671 2178 144 0 0 chr12 30237826 30238131 -113548324 + AluSx SINE Alu 1 305 -7 7049 124 11 5 chr12 30238131 30238806 -113547649 + L1MA1 LINE L1 5631 6301 -1 409 278 97 23 chr12 30238916 30239092 -113547363 + MER5A DNA MER1_type 1 189 0 460 311 28 28 chr12 30239185 30239362 -113547093 - MER5A DNA MER1_type -6 183 7 1356 152 0 5 chr12 30240625 30240829 -113545626 - AluJb SINE Alu -109 203 1 1167 287 80 39 chr12 30241230 30241980 -113544475 - L1ME4a LINE L1 -54 6067 5287 2339 80 7 7 chr12 30242013 30242312 -113544143 - AluSq SINE Alu -14 299 1 2277 85 3 3 chr12 30242741 30243036 -113543419 - AluSq SINE Alu -18 295 1 232 235 84 50 chr12 30243156 30243275 -113543180 - L1 LINE L1 -1523 4623 4501 2900 3 0 0 chr12 30243419 30243730 -113542725 - AluYb8 SINE Alu -7 311 1 232 332 52 26 chr12 30243805 30243998 -113542457 - L1 LINE L1 -1908 4238 4041 198 286 24 60 chr12 30244233 30244317 -113542138 + L2 LINE L2 2596 2676 -638 571 269 142 10 chr12 30245182 30245379 -113541076 + MIR SINE MIR 4 226 -36 1875 81 101 68 chr12 30245426 30245722 -113540733 + AluSq SINE Alu 1 306 -7 27 49 0 0 chr12 30246032 30246073 -113540382 + AT_rich Low_complexity Low_complexity 1 41 0 2293 115 6 3 chr12 30246594 30246906 -113539549 + AluSq SINE Alu 1 313 0 237 327 128 48 chr12 30247358 30247716 -113538739 + L2 LINE L2 2826 3212 -60 270 0 0 0 chr12 30248292 30248322 -113538133 + (TTG)n Simple_repeat Simple_repeat 2 31 0 227 340 150 14 chr12 30249371 30249518 -113536937 - MIR SINE MIR -15 247 81 2425 68 10 7 chr12 30249615 30249924 -113536531 + AluY SINE Alu 2 311 0 197 363 47 18 chr12 30250138 30250309 -113536146 - L2 LINE L2 -398 2916 2741 281 320 96 37 chr12 30250793 30250971 -113535484 - MER5A DNA MER1_type -1 188 2 217 239 87 87 chr12 30252006 30252098 -113534357 - L2 LINE L2 -66 3206 3115 1902 161 13 13 chr12 30252790 30253100 -113533355 - AluJo SINE Alu -2 310 1 330 87 0 0 chr12 30255051 30255097 -113531358 + (CCTA)n Simple_repeat Simple_repeat 2 47 0 357 43 0 0 chr12 30256336 30256383 -113530072 + (CA)n Simple_repeat Simple_repeat 2 48 0 195 42 0 0 chr12 30256382 30256406 -113530049 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 252 0 0 0 chr12 30259329 30259357 -113527098 + (CA)n Simple_repeat Simple_repeat 1 28 0 210 273 30 15 chr12 30260192 30260258 -113526197 - MER5A DNA MER1_type -95 94 28 203 263 26 26 chr12 30260199 30260275 -113526180 + MER5A DNA MER1_type 114 189 0 * 333 293 0 0 chr12 30261023 30261122 -113525333 - L1M4 LINE L1 -2305 3841 3743 685 294 151 12 chr12 30261131 30261815 -113524640 - L1M4 LINE L1 -2535 3611 2833 211 341 35 24 chr12 30261849 30261934 -113524521 + MIR SINE MIR 1 86 -176 218 254 127 0 chr12 30261943 30262014 -113524441 - L2 LINE L2 -44 3269 3190 491 299 67 46 chr12 30262034 30262228 -113524227 + MIR SINE MIR 63 260 -2 331 318 23 53 chr12 30262399 30262531 -113523924 + L2 LINE L2 3144 3271 -1 1938 263 105 41 chr12 30262592 30263599 -113522856 - L2 LINE L2 0 3313 2256 2247 123 8 19 chr12 30264794 30265159 -113521296 + MER46B DNA MER2_type 1 236 0 286 317 121 18 chr12 30265353 30265577 -113520878 - MIR SINE MIR -1 261 15 449 290 86 108 chr12 30266351 30266641 -113519814 - L1MC/D LINE L1 -2002 5806 5530 2366 103 0 0 chr12 30266641 30266953 -113519502 - AluSx SINE Alu 0 312 1 449 290 86 108 chr12 30266953 30267173 -113519282 - L1MC/D LINE L1 -2278 5530 5307 517 315 36 12 chr12 30267289 30267454 -113519001 + MIR SINE MIR 5 173 -89 1784 159 3 20 chr12 30267582 30267883 -113518572 + AluJb SINE Alu 1 296 -16 239 189 261 72 chr12 30268329 30268440 -113518015 + MIR SINE MIR 76 207 -55 382 119 10 10 chr12 30268906 30269100 -113517355 + AluJb SINE Alu 1 291 -11 2047 52 0 0 chr12 30270475 30270726 -113515729 - L1PA4 LINE L1 -5875 271 21 * 41522 38 4 2 chr12 30270724 30276570 -113509885 + L1PA4 LINE L1 296 6155 0 2219 110 0 0 chr12 30277719 30278019 -113508436 - AluSx SINE Alu -12 300 1 23 0 0 0 chr12 30278627 30278650 -113507805 + AT_rich Low_complexity Low_complexity 1 23 0 222 163 47 0 chr12 30278665 30278708 -113507747 - L2 LINE L2 0 3313 3269 203 302 19 0 chr12 30280400 30280453 -113506002 - L2 LINE L2 -6 3307 3254 496 264 42 61 chr12 30280473 30280685 -113505770 - MIR SINE MIR -6 256 49 22 35 0 0 chr12 30283252 30283281 -113503174 + AT_rich Low_complexity Low_complexity 1 29 0 2237 97 0 10 chr12 30285556 30285855 -113500600 + AluSc SINE Alu 3 298 -11 22 0 0 0 chr12 30285929 30285951 -113500504 + AT_rich Low_complexity Low_complexity 1 22 0 1460 217 10 13 chr12 30286026 30286325 -113500130 + AluJo SINE Alu 2 299 -13 21 0 0 0 chr12 30288750 30288771 -113497684 + AT_rich Low_complexity Low_complexity 1 21 0 207 146 0 0 chr12 30288998 30289039 -113497416 + (TC)n Simple_repeat Simple_repeat 2 42 0 1776 140 3 20 chr12 30289042 30289335 -113497120 - AluJo SINE Alu -24 288 1 1959 124 14 7 chr12 30289685 30289976 -113496479 - AluSx SINE Alu -19 293 1 352 357 48 29 chr12 30290371 30290581 -113495874 - MIR SINE MIR -44 218 5 1200 263 112 17 chr12 30291719 30292129 -113494326 - L1MC4a LINE L1 -1924 5884 5436 499 209 0 0 chr12 30293294 30293385 -113493070 + AluJ/FLAM SINE Alu 1 91 -221 1472 163 0 4 chr12 30293389 30293629 -113492826 + AluJo SINE Alu 64 302 -10 2103 126 3 7 chr12 30293843 30294152 -113492303 - AluJb SINE Alu -4 308 1 484 290 21 7 chr12 30294564 30294709 -113491746 - MIR SINE MIR -98 164 18 253 263 0 18 chr12 30295227 30295284 -113491171 + L2 LINE L2 3143 3198 -74 7874 199 116 30 chr12 30297911 30300045 -113486410 - Cheshire DNA MER1_type -2 2418 83 2298 101 0 3 chr12 30300045 30300353 -113486102 + AluSx SINE Alu 3 309 -3 7874 199 116 30 chr12 30300353 30300444 -113486011 - Cheshire DNA MER1_type -2337 83 1 901 165 96 74 chr12 30301077 30301307 -113485148 - MER46A DNA MER2_type 0 236 2 23 33 0 0 chr12 30301456 30301486 -113484969 + AT_rich Low_complexity Low_complexity 1 30 0 2225 212 82 25 chr12 30301640 30302211 -113484244 + MER20B DNA MER1_type 42 645 -138 21 0 0 0 chr12 30302912 30302933 -113483522 + AT_rich Low_complexity Low_complexity 1 21 0 388 240 29 29 chr12 30303034 30303138 -113483317 + L2 LINE L2 3210 3313 0 2073 100 10 3 chr12 30303690 30303979 -113482476 - AluSq SINE Alu -17 296 6 2075 120 3 10 chr12 30304631 30304932 -113481523 - AluSx SINE Alu -13 299 1 1510 168 87 19 chr12 30306042 30306352 -113480103 + L1MC1 LINE L1 5990 6320 -13 671 306 123 13 chr12 30307604 30308061 -113478394 + L1ME4a LINE L1 5315 5821 -1987 406 183 39 44 chr12 30308100 30308280 -113478175 + (TA)n Simple_repeat Simple_repeat 2 180 0 331 193 28 150 chr12 30308330 30308476 -113477979 + L1ME4a LINE L1 5931 6045 -76 1052 111 115 69 chr12 30308476 30308627 -113477828 + MER30 DNA MER1_type 4 169 -61 2007 124 3 17 chr12 30308627 30308926 -113477529 + AluSx SINE Alu 1 295 -17 1052 111 115 69 chr12 30308926 30308991 -113477464 + MER30 DNA MER1_type 169 230 0 331 193 28 150 chr12 30308991 30309057 -113477398 + L1ME4a LINE L1 6045 6117 -4 1723 114 25 85 chr12 30309956 30310272 -113476183 + AluSq SINE Alu 1 297 -16 306 330 88 11 chr12 30310684 30310866 -113475589 - MIR SINE MIR -46 216 21 41 66 0 0 chr12 30311029 30311105 -113475350 + AT_rich Low_complexity Low_complexity 1 76 0 26 30 0 0 chr12 30311215 30311248 -113475207 + AT_rich Low_complexity Low_complexity 1 33 0 5341 126 22 14 chr12 30311935 30313284 -113473171 + L1PA16 LINE L1 4807 6160 -6 212 220 9 64 chr12 30313302 30313411 -113473044 + A-rich Low_complexity Low_complexity 5 107 0 182 402 73 11 chr12 30316332 30316511 -113469944 - MIR SINE MIR -14 248 59 309 171 0 71 chr12 30316994 30317064 -113469391 - MIR SINE MIR -69 139 75 * 447 247 65 58 chr12 30317055 30317209 -113469246 - MIR SINE MIR -51 211 57 21 57 0 0 chr12 30318294 30318329 -113468126 + AT_rich Low_complexity Low_complexity 1 35 0 517 221 97 32 chr12 30318780 30318934 -113467521 - MIR SINE MIR -32 230 67 23 86 0 0 chr12 30319598 30319656 -113466799 + AT_rich Low_complexity Low_complexity 1 58 0 2075 123 0 19 chr12 30319720 30320062 -113466393 + AluSx SINE Alu 1 312 0 195 42 0 0 chr12 30320095 30320119 -113466336 + (GAA)n Simple_repeat Simple_repeat 3 26 0 364 283 176 61 chr12 30320159 30320317 -113466138 + L1ME4a LINE L1 5640 5778 -343 1933 137 0 20 chr12 30320317 30320623 -113465832 - AluJb SINE Alu -12 300 1 364 283 176 61 chr12 30320623 30320793 -113465662 + L1ME4a LINE L1 5778 6006 -115 706 326 166 37 chr12 30321635 30323016 -113463439 + L2 LINE L2 1630 3223 -49 250 245 196 0 chr12 30323124 30323226 -113463229 + L2 LINE L2 3192 3313 0 592 265 43 57 chr12 30323773 30323984 -113462471 - MIR SINE MIR -32 230 23 1987 133 26 48 chr12 30324970 30325322 -113461133 + MER2 DNA MER2_type 1 344 0 273 333 68 23 chr12 30325409 30325541 -113460914 - L3 LINE CR1 -1074 503 366 1828 200 71 12 chr12 30325690 30326100 -113460355 + MLT1C LTR MaLR 34 467 0 224 222 96 96 chr12 30326457 30326592 -113459863 + MIR SINE MIR 71 205 -57 888 225 53 0 chr12 30327249 30327436 -113459019 - MIR SINE MIR 0 262 66 21 0 0 0 chr12 30327716 30327737 -113458718 + AT_rich Low_complexity Low_complexity 1 21 0 361 287 64 38 chr12 30329617 30329774 -113456681 - MIR SINE MIR -42 220 60 913 217 49 15 chr12 30329995 30330198 -113456257 + MIR SINE MIR 3 212 -50 1100 78 0 0 chr12 30330466 30330608 -113455847 - HERV9 LTR ERV1 -6416 1983 1842 15449 96 15 7 chr12 30330784 30333246 -113453209 - HERV9 LTR ERV1 -1935 503 2 332 204 31 20 chr12 30333249 30333347 -113453108 - LTR30 LTR ERV1 -80 642 544 4629 124 66 75 chr12 30333347 30334470 -113451985 - pTR5 LTR ERV1 -413 2025 741 1766 142 45 7 chr12 30334677 30334839 -113451616 - AluSx SINE Alu -10 302 123 423 0 0 0 chr12 30334839 30334886 -113451569 + (TG)n Simple_repeat Simple_repeat 2 48 0 1766 142 45 7 chr12 30334886 30335012 -113451443 - AluSx SINE Alu -189 123 3 1967 129 10 20 chr12 30335344 30335639 -113450816 - AluSx SINE Alu -20 292 1 335 289 70 7 chr12 30335659 30335801 -113450654 + Tigger8 DNA MER2_type 83 233 -433 286 282 26 122 chr12 30335855 30336011 -113450444 - L2 LINE L2 -3 3310 3170 22 0 0 0 chr12 30336720 30336742 -113449713 + AT_rich Low_complexity Low_complexity 1 22 0 14388 157 62 34 chr12 30336946 30340579 -113445876 - MER109 Unknown Unknown 0 2432 578 2369 86 0 0 chr12 30340579 30340869 -113445586 + AluSc SINE Alu 1 290 -19 14388 157 62 34 chr12 30340869 30341464 -113444991 - MER109 Unknown Unknown -1854 578 1 305 241 69 9 chr12 30341568 30341684 -113444771 - MER109 Unknown Unknown -1831 601 479 383 228 70 0 chr12 30343149 30343263 -113443192 + MLT1F1 LTR MaLR 156 277 -290 522 298 68 10 chr12 30343265 30343557 -113442898 - HAL1 LINE L1 -971 1536 1228 2290 111 0 7 chr12 30343710 30344016 -113442439 + AluSq SINE Alu 1 304 -9 448 270 55 59 chr12 30344158 30344395 -113442060 + MLT1J LTR MaLR 226 461 -50 468 311 128 5 chr12 30344656 30344852 -113441603 + MIR SINE MIR 2 221 -41 388 233 130 13 chr12 30345179 30345445 -113441010 - L1MB8 LINE L1 -5 6161 5841 2142 102 3 20 chr12 30345454 30345759 -113440696 - AluSx SINE Alu -10 302 3 829 289 45 4 chr12 30345886 30346128 -113440327 - MIR SINE MIR -1 261 10 312 277 181 46 chr12 30346689 30346927 -113439528 - L1ME3 LINE L1 -211 5951 5682 280 180 0 49 chr12 30346967 30347028 -113439427 + MER5B DNA MER1_type 8 65 -113 382 284 31 21 chr12 30347069 30347262 -113439193 - L1ME3 LINE L1 -519 5651 5461 2421 90 0 0 chr12 30347348 30347658 -113438797 - AluY SINE Alu -1 310 1 329 274 204 22 chr12 30347755 30348025 -113438430 + Tigger8 DNA MER2_type 206 524 -142 188 200 20 40 chr12 30348376 30348426 -113438029 + L2 LINE L2 3265 3313 0 2132 94 63 0 chr12 30348551 30348838 -113437617 + AluSg SINE Alu 1 305 -5 3170 120 93 9 chr12 30349132 30349713 -113436742 + MER39B LTR ERV1 5 621 -1 286 303 12 47 chr12 30350112 30350333 -113436122 + GA-rich Low_complexity Low_complexity 1 213 0 304 319 6 35 chr12 30350384 30350553 -113435902 + GA-rich Low_complexity Low_complexity 3 166 0 277 213 40 0 chr12 30350842 30350917 -113435538 + MER116 DNA Mariner 1 78 -2 2220 119 0 3 chr12 30352403 30352714 -113433741 + AluSg SINE Alu 1 310 0 265 229 0 0 chr12 30352724 30352785 -113433670 - MER116 DNA Mariner -16 64 4 41811 39 2 4 chr12 30353973 30360135 -113426320 - L1PA3 LINE L1 -1 6154 2 1249 231 7 50 chr12 30360523 30360822 -113425633 - AluJo SINE Alu -25 287 2 21 57 0 0 chr12 30361162 30361197 -113425258 + AT_rich Low_complexity Low_complexity 1 35 0 240 35 0 0 chr12 30361324 30361353 -113425102 + (CA)n Simple_repeat Simple_repeat 2 30 0 2104 97 17 21 chr12 30361683 30361973 -113424482 - AluSx SINE Alu -8 304 16 264 258 148 62 chr12 30362043 30362299 -113424156 - L1ME LINE L1 -315 5806 5529 280 288 29 14 chr12 30362303 30362442 -113424013 + L1ME LINE L1 5574 5714 -407 24 0 0 0 chr12 30362506 30362530 -113423925 + AT_rich Low_complexity Low_complexity 1 24 0 293 261 14 0 chr12 30363072 30363141 -113423314 - MER5B DNA MER1_type -1 177 108 3929 197 85 56 chr12 30363150 30364864 -113421591 + L1MD1 LINE L1 4295 6072 -170 2046 92 7 35 chr12 30364864 30365147 -113421308 + AluSx SINE Alu 32 306 -6 3929 197 85 56 chr12 30365147 30365318 -113421137 + L1MD1 LINE L1 6072 6236 -6 360 300 58 0 chr12 30365353 30365423 -113421032 - MER5B DNA MER1_type -51 127 46 384 40 0 0 chr12 30365423 30365473 -113420982 + (TG)n Simple_repeat Simple_repeat 2 51 0 360 300 58 0 chr12 30365473 30365522 -113420933 - MER5B DNA MER1_type -132 46 1 409 284 42 0 chr12 30365788 30365883 -113420572 - MIR SINE MIR -103 159 61 1412 216 13 23 chr12 30366514 30366820 -113419635 - AluJo SINE Alu -9 303 1 2326 83 0 23 chr12 30366956 30367256 -113419199 - AluY SINE Alu -18 293 1 223 139 0 0 chr12 30368060 30368096 -113418359 - MIR SINE MIR -109 153 118 2914 3 3 0 chr12 30368161 30368478 -113417977 - AluYb8 SINE Alu 0 318 1 463 290 115 37 chr12 30369741 30369958 -113416497 - MIR SINE MIR 0 262 29 554 248 102 6 chr12 30370468 30370625 -113415830 - MIR SINE MIR 0 262 91 1549 192 0 54 chr12 30370667 30370980 -113415475 - AluJb SINE Alu -16 296 1 501 261 12 118 chr12 30372656 30372901 -113413554 + MIR SINE MIR 31 249 -13 951 174 152 112 chr12 30373155 30373602 -113412853 + MER31B LTR ERV1 2 466 0 2249 102 3 7 chr12 30373768 30374061 -113412394 + AluSx SINE Alu 1 292 -20 3386 148 41 58 chr12 30374508 30375243 -113411212 + MER50 LTR ERV1 1 722 -12 321 285 192 0 chr12 30375783 30375913 -113410542 + MIR3 SINE MIR 45 199 -9 343 188 78 0 chr12 30376365 30376429 -113410026 - L2 LINE L2 -42 3271 3203 183 195 322 0 chr12 30376620 30376707 -113409748 - MIR SINE MIR -10 252 138 1859 151 11 0 chr12 30376728 30377035 -113409420 + AluJb SINE Alu 1 310 0 546 288 53 60 chr12 30377058 30377546 -113408909 - L1MCc LINE L1 -4818 2304 1814 2294 88 0 10 chr12 30377546 30377842 -113408613 - AluY SINE Alu -18 293 1 546 288 53 60 chr12 30377842 30377906 -113408549 - L1MCc LINE L1 -5308 1814 1751 213 39 0 0 chr12 30377906 30377932 -113408523 + (TCC)n Simple_repeat Simple_repeat 2 27 0 546 288 53 60 chr12 30377932 30378289 -113408166 - L1MCc LINE L1 -5371 1751 1179 27 49 0 0 chr12 30380120 30380161 -113406294 + AT_rich Low_complexity Low_complexity 1 41 0 696 326 47 61 chr12 30380747 30381050 -113405405 + L2 LINE L2 2815 3110 -203 2135 117 7 7 chr12 30381050 30381377 -113405078 - AluSq SINE Alu 0 313 1 696 326 47 61 chr12 30381377 30381579 -113404876 + L2 LINE L2 3110 3313 0 2402 94 0 0 chr12 30382210 30382509 -113403946 - AluSx SINE Alu -13 299 1 309 252 68 29 chr12 30383033 30383136 -113403319 - MIR SINE MIR -151 111 5 191 345 128 28 chr12 30383205 30383634 -113402821 - L2 LINE L2 -931 2383 1912 291 125 0 0 chr12 30383828 30383876 -113402579 - Alu SINE Alu -3 299 252 * 1264 192 98 31 chr12 30383862 30384198 -113402257 - MLT1C LTR MaLR -108 359 1 1092 155 0 0 chr12 30384610 30384771 -113401684 - AluSg/x SINE Alu -14 298 138 222 37 0 0 chr12 30384883 30384910 -113401545 + (CA)n Simple_repeat Simple_repeat 1 27 0 1848 118 44 7 chr12 30384960 30385232 -113401223 - AluSg1 SINE Alu -14 295 14 24 53 0 0 chr12 30385665 30385703 -113400752 + AT_rich Low_complexity Low_complexity 1 38 0 1683 163 14 10 chr12 30385703 30385992 -113400463 - AluJo SINE Alu -22 290 1 193 303 23 136 chr12 30386040 30386172 -113400283 - MIR3 SINE MIR -86 122 6 300 27 0 0 chr12 30386187 30386224 -113400231 + (CA)n Simple_repeat Simple_repeat 2 38 0 230 368 0 0 chr12 30386839 30386926 -113399529 + L2 LINE L2 2581 2667 -647 631 218 0 8 chr12 30387873 30387997 -113398458 - FLAM_C SINE Alu -20 123 1 186 133 0 0 chr12 30388206 30388236 -113398219 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 200 284 40 27 chr12 30388979 30389053 -113397402 + MER5B DNA MER1_type 104 178 0 2583 120 31 14 chr12 30390924 30391341 -113395114 + MSTA LTR MaLR 1 424 -4 400 333 147 9 chr12 30391347 30391680 -113394775 + L2 LINE L2 2915 3293 -20 2572 51 0 3 chr12 30391888 30392199 -113394256 - AluY SINE Alu -1 310 1 2359 168 36 2 chr12 30392988 30393399 -113393056 - MSTB LTR MaLR 0 426 2 197 322 28 63 chr12 30393685 30393828 -113392627 + MIR SINE MIR 84 221 -41 958 179 70 30 chr12 30394001 30394202 -113392253 + MER3 DNA MER1_type 1 209 0 3248 107 14 24 chr12 30394886 30395380 -113391075 - LTR22B LTR ERVK -3 489 1 257 286 97 26 chr12 30395460 30395614 -113390841 + L2 LINE L2 1931 2095 -1219 520 264 181 0 chr12 30395636 30395780 -113390675 + MER91B DNA MER1_type 19 188 -2 227 350 157 43 chr12 30395809 30396288 -113390167 + L2 LINE L2 2123 2711 -603 2556 48 0 3 chr12 30396288 30396599 -113389856 - AluY SINE Alu -1 310 1 227 350 157 43 chr12 30396599 30396833 -113389622 + L2 LINE L2 2711 2917 -397 288 359 78 0 chr12 30396886 30396989 -113389466 + L2 LINE L2 3127 3237 -35 2096 108 0 7 chr12 30397390 30397685 -113388770 + AluSc SINE Alu 1 293 -16 27 49 0 0 chr12 30398217 30398258 -113388197 + AT_rich Low_complexity Low_complexity 1 41 0 549 190 120 25 chr12 30398355 30398513 -113387942 + MIR SINE MIR 90 262 0 1605 209 19 14 chr12 30398976 30399396 -113387059 - L1PB4 LINE L1 -825 5321 4900 * 4801 127 31 11 chr12 30399377 30400212 -113386243 + L1PB4 LINE L1 5304 6155 -1 1480 188 82 28 chr12 30401041 30401356 -113385099 + LTR52 LTR ERVL 9 350 -71 351 0 0 0 chr12 30401356 30401395 -113385060 + (TG)n Simple_repeat Simple_repeat 1 39 0 1480 188 82 28 chr12 30401395 30401468 -113384987 + LTR52 LTR ERVL 350 418 -3 5588 130 10 2 chr12 30401942 30402843 -113383612 + L1MC1 LINE L1 5426 6333 0 21 36 0 0 chr12 30403252 30403280 -113383175 + AT_rich Low_complexity Low_complexity 1 28 0 217 283 0 0 chr12 30403459 30403505 -113382950 + L2 LINE L2 3251 3296 -17 2054 108 3 3 chr12 30405154 30405449 -113381006 + AluY SINE Alu 1 295 -16 24 0 0 0 chr12 30405449 30405473 -113380982 + AT_rich Low_complexity Low_complexity 1 24 0 1534 274 23 57 chr12 30405507 30406108 -113380347 + L2 LINE L2 2075 2655 -659 3862 196 88 63 chr12 30406203 30406798 -113379657 + L1MC3 LINE L1 6545 7124 -661 253 246 0 0 chr12 30406798 30406855 -113379600 + MLT1F1 LTR MaLR 68 124 -443 3862 196 88 63 chr12 30406855 30407127 -113379328 + L1MC3 LINE L1 7124 7388 -397 233 89 22 0 chr12 30407127 30407172 -113379283 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 3862 196 88 63 chr12 30407172 30407438 -113379017 + L1MC3 LINE L1 7388 7765 -20 21 0 0 0 chr12 30407716 30407737 -113378718 + AT_rich Low_complexity Low_complexity 1 21 0 866 192 4 96 chr12 30407925 30408154 -113378301 + MER58A DNA MER1_type 1 208 -16 23 0 0 0 chr12 30408480 30408503 -113377952 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr12 30408544 30408579 -113377876 + AT_rich Low_complexity Low_complexity 1 35 0 2481 35 0 0 chr12 30408829 30409169 -113377286 + AluY SINE Alu 1 340 0 1104 159 94 14 chr12 30409622 30409898 -113376557 + MER33 DNA MER1_type 5 302 -22 345 271 90 14 chr12 30410056 30410200 -113376255 - MER20 DNA MER1_type -34 185 31 189 322 0 0 chr12 30410229 30410288 -113376167 + MIR3 SINE MIR 144 202 -6 21 57 0 0 chr12 30410324 30410359 -113376096 + AT_rich Low_complexity Low_complexity 1 35 0 255 335 99 7 chr12 30410845 30410997 -113375458 - MIR SINE MIR -57 205 40 242 288 136 60 chr12 30411003 30411180 -113375275 + L3b LINE CR1 1279 1472 -111 2430 96 0 6 chr12 30411180 30411494 -113374961 + AluSx SINE Alu 1 312 0 284 174 8 174 chr12 30411803 30411935 -113374520 - L1MB5 LINE L1 -8 6166 6057 853 315 129 40 chr12 30412302 30413071 -113373384 - L2 LINE L2 -769 2545 1709 1609 76 3 170 chr12 30413293 30413635 -113372820 + LTR12 LTR ERV1 1 285 -429 276 211 14 0 chr12 30413636 30413707 -113372748 + LTR30 LTR ERV1 553 624 -98 714 160 25 0 chr12 30413707 30413826 -113372629 + LTR12 LTR ERV1 359 480 -234 212 86 29 0 chr12 30413954 30413989 -113372466 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 446 358 66 8 chr12 30414067 30414430 -113372025 - L2 LINE L2 -1605 1709 1326 467 17 17 0 chr12 30415135 30415195 -113371260 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 253 310 93 8 chr12 30416394 30416523 -113369932 + MIR SINE MIR 111 250 -12 2101 160 0 69 chr12 30416676 30417095 -113369360 + MLT1B LTR MaLR 1 390 0 1526 167 3 70 chr12 30417301 30417601 -113368854 - AluJb SINE Alu -28 284 5 185 156 0 0 chr12 30418154 30418186 -113368269 + MIR SINE MIR 130 161 -101 240 250 0 0 chr12 30419987 30420039 -113366416 + LTR30 LTR ERV1 1 52 -670 1671 108 150 163 chr12 30420039 30420750 -113365705 + LTR12 LTR ERV1 53 581 -133 * 10064 109 9 24 chr12 30420725 30421197 -113365258 + HERV9 LTR ERV1 55 533 -7866 2245 92 54 0 chr12 30421197 30421492 -113364963 + AluY SINE Alu 1 311 0 10064 109 9 24 chr12 30421492 30423520 -113362935 + HERV9 LTR ERV1 533 2596 -5803 1792 187 48 30 chr12 30423656 30424521 -113361934 - SVA Other Other -518 868 432 2136 120 108 0 chr12 30424531 30424882 -113361573 + HERV9 LTR ERV1 2584 2972 -5427 1336 95 0 0 chr12 30424881 30425070 -113361385 + HERV9 LTR ERV1 4756 4944 -3455 * 1874 95 34 83 chr12 30425071 30425980 -113360475 + HERV17 LTR ERV1 704 1740 -5156 * 5296 105 1 0 chr12 30425978 30426751 -113359704 + HERV17 LTR ERV1 7626 8399 0 254 211 0 0 chr12 30426751 30426803 -113359652 + LTR30 LTR ERV1 1 52 -670 1725 96 167 191 chr12 30426803 30427395 -113359060 + LTR12 LTR ERV1 57 581 -133 383 303 56 19 chr12 30429757 30429919 -113356536 - MIR SINE MIR -42 220 53 245 238 0 29 chr12 30430811 30430916 -113355539 + L1M4 LINE L1 5118 5219 -927 477 295 107 45 chr12 30431771 30431886 -113354569 - MIR SINE MIR 0 262 156 399 160 40 0 chr12 30431886 30431961 -113354494 + MER116 DNA Mariner 1 78 -2 477 295 107 45 chr12 30431961 30432069 -113354386 - MIR SINE MIR -106 156 25 243 224 0 0 chr12 30432337 30432386 -113354069 - MIR3 SINE MIR -7 201 153 483 199 44 0 chr12 30432631 30432753 -113353702 - MIR SINE MIR -62 146 43 * 484 338 98 61 chr12 30432745 30433041 -113353414 + L2 LINE L2 2963 3269 -3 2538 246 75 33 chr12 30433609 30434795 -113351660 + L1ME3A LINE L1 4923 6170 0 1812 157 66 76 chr12 30434965 30435359 -113351096 + MLT1B LTR MaLR 1 390 0 222 313 15 0 chr12 30435553 30435620 -113350835 - L2 LINE L2 -553 2761 2694 2072 100 65 0 chr12 30436381 30436660 -113349795 - AluY SINE Alu -14 297 1 343 223 78 58 chr12 30436866 30436969 -113349486 + L2 LINE L2 3168 3272 0 299 345 101 0 chr12 30436990 30437109 -113349346 + MIR3 SINE MIR 30 160 -48 366 23 0 0 chr12 30438767 30438810 -113347645 + (TA)n Simple_repeat Simple_repeat 2 44 0 324 180 56 67 chr12 30439130 30439219 -113347236 - MER5A DNA MER1_type -63 126 39 30 0 0 0 chr12 30439579 30439609 -113346846 + AT_rich Low_complexity Low_complexity 1 30 0 1190 140 43 100 chr12 30439650 30439950 -113346505 - L1MA7 LINE L1 -122 6169 5887 1092 197 90 72 chr12 30440082 30440417 -113346038 - MER58B DNA MER1_type 0 341 1 2194 69 33 0 chr12 30441192 30441514 -113344941 + AluY SINE Alu 1 331 0 540 328 114 39 chr12 30442076 30442868 -113343587 + L2 LINE L2 2453 3312 -1 277 355 32 11 chr12 30444106 30444199 -113342256 - MIR SINE MIR -102 160 66 764 195 75 25 chr12 30444303 30444462 -113341993 - MER45A DNA AcHobo -11 167 1 24 32 0 0 chr12 30446821 30446852 -113339603 + GC_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr12 30446967 30446987 -113339468 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 279 303 38 60 chr12 30448112 30448379 -113338076 + L1ME LINE L1 5478 5738 -383 2271 173 71 33 chr12 30448481 30448931 -113337524 - MLT1C LTR MaLR 0 467 1 1011 239 68 66 chr12 30448952 30449389 -113337066 + MLT1C LTR MaLR 1 438 -29 2007 157 48 8 chr12 30449389 30449804 -113336651 + MER61D LTR ERV1 1 501 0 819 253 75 26 chr12 30449865 30450377 -113336078 + MER61D-int LTR ERV1 68 542 -2546 746 174 147 94 chr12 30450472 30450770 -113335685 + HUERS-P3b LTR ERV1 290 884 -4819 11589 170 24 52 chr12 30450776 30454639 -113331816 + HUERS-P3b LTR ERV1 609 6062 -481 2428 90 0 0 chr12 30454639 30454940 -113331515 - AluY SINE Alu -10 301 1 11589 170 24 52 chr12 30454940 30455115 -113331340 + HUERS-P3b LTR ERV1 6062 6240 -303 3234 72 23 20 chr12 30455115 30455557 -113330898 + LTR7 LTR ERV1 1 443 -7 18619 106 20 37 chr12 30455565 30458610 -113327845 + HERVH LTR ERV1 1 2992 -4721 6074 92 6 2 chr12 30458596 30459447 -113327008 + HERVH LTR ERV1 3140 3993 -3720 * 4472 127 0 21 chr12 30459450 30459986 -113326469 + HERVH LTR ERV1 4489 5010 -2703 2302 92 3 0 chr12 30459986 30460281 -113326174 + AluY SINE Alu 1 296 -15 4472 127 0 21 chr12 30460281 30460419 -113326036 + HERVH LTR ERV1 5010 5149 -2564 2623 101 52 21 chr12 30460436 30460860 -113325595 + HERVH LTR ERV1 7277 7713 0 3304 57 23 18 chr12 30460860 30461297 -113325158 + LTR7 LTR ERV1 1 439 -11 3473 146 16 20 chr12 30461301 30462084 -113324371 + MER61D-int LTR ERV1 3500 6995 -1 1928 167 45 7 chr12 30462085 30462484 -113323971 + MER61D LTR ERV1 1 501 0 2216 101 10 3 chr12 30462859 30463166 -113323289 + AluSx SINE Alu 1 309 -3 2158 128 0 10 chr12 30463429 30463735 -113322720 - AluSg SINE Alu -7 303 1 1558 221 119 70 chr12 30463918 30464537 -113321918 - MLT1E1 LTR MaLR -4 650 1 2393 43 0 4 chr12 30465132 30465410 -113321045 + AluY SINE Alu 28 304 -7 30 0 0 0 chr12 30465602 30465632 -113320823 + AT_rich Low_complexity Low_complexity 1 30 0 1822 179 77 19 chr12 30465637 30466001 -113320454 + L1MC1 LINE L1 53 437 -5989 2980 146 51 11 chr12 30466011 30466540 -113319915 + L1MC1 LINE L1 1691 2240 -4186 2709 221 98 39 chr12 30466560 30467323 -113319132 - MER21B LTR ERV1 -11 852 45 358 268 0 0 chr12 30467328 30467399 -113319056 - MER21B LTR ERV1 -774 89 19 356 214 36 12 chr12 30467502 30467586 -113318869 - MER21B LTR ERV1 -777 86 1 11740 215 37 17 chr12 30467587 30468291 -113318164 + L1MC1 LINE L1 2249 2937 -3676 2674 32 3 0 chr12 30468291 30468599 -113317856 - AluY SINE Alu -2 309 1 11740 215 37 17 chr12 30468599 30470820 -113315635 + L1MC1 LINE L1 2937 5285 -1328 261 0 0 0 chr12 30470820 30470849 -113315606 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 11740 215 37 17 chr12 30470849 30472164 -113314291 + L1MC1 LINE L1 5285 6572 -41 551 144 112 32 chr12 30472159 30472284 -113314171 + L1MC1 LINE L1 6199 6333 0 * 1532 220 11 5 chr12 30472760 30473128 -113313327 - Zaphod DNA AcHobo -65 3966 3597 * 2831 229 65 56 chr12 30473106 30473347 -113313108 - Zaphod DNA AcHobo -3023 1008 771 1650 178 0 20 chr12 30473347 30473645 -113312810 - AluJo SINE Alu -20 292 1 2831 229 65 56 chr12 30473645 30474392 -113312063 - Zaphod DNA AcHobo -3260 771 11 1571 186 7 14 chr12 30474640 30474930 -113311525 - AluJo SINE Alu -16 296 9 567 84 0 36 chr12 30475043 30475126 -113311329 - MADE1 DNA Mariner 0 80 1 259 264 157 90 chr12 30475992 30476348 -113310107 - L2 LINE L2 0 3313 2934 2344 116 52 17 chr12 30476626 30476988 -113309467 - THE1C LTR MaLR 0 375 1 210 336 22 22 chr12 30478018 30478155 -113308300 + MIR SINE MIR 109 245 -17 1929 136 38 95 chr12 30478349 30478718 -113307737 - MER7A DNA MER2_type 0 346 1 451 248 36 51 chr12 30479118 30479203 -113307252 - MIR SINE MIR -21 241 157 4709 75 68 21 chr12 30479203 30479831 -113306624 + PABL_A LTR ERV1 1 658 -2 451 248 36 51 chr12 30479831 30479882 -113306573 - MIR SINE MIR -105 157 107 3012 97 335 4 chr12 30480658 30481174 -113305281 + LTR12 LTR ERV1 1 687 -1 2241 67 43 10 chr12 30481454 30481754 -113304701 - AluY SINE Alu -1 310 1 204 308 94 44 chr12 30481982 30482141 -113304314 + L2 LINE L2 2808 2974 -340 802 219 128 41 chr12 30482177 30482520 -113303935 + MER96B DNA MER1_type? 24 396 -21 12063 202 104 12 chr12 30482546 30487196 -113299259 + L1M2 LINE L1 1 5123 -1725 6897 58 5 1 chr12 30487196 30488208 -113298247 + L1PA6 LINE L1 5122 6136 -18 333 88 44 22 chr12 30488215 30488306 -113298149 + (TA)n Simple_repeat Simple_repeat 2 94 0 301 271 98 23 chr12 30488487 30488620 -113297835 - L1ME4a LINE L1 -2 6119 5977 2135 126 3 0 chr12 30489693 30489986 -113296469 - AluSx SINE Alu -18 294 1 547 237 23 8 chr12 30489986 30490117 -113296338 - MIR SINE MIR -1 261 129 210 128 0 0 chr12 30490216 30490255 -113296200 + (TG)n Simple_repeat Simple_repeat 2 40 0 282 382 62 24 chr12 30491941 30492279 -113294176 - L2 LINE L2 -338 2976 2626 483 272 105 40 chr12 30492360 30492588 -113293867 + MIR SINE MIR 19 261 -1 27 73 0 0 chr12 30493138 30493193 -113293262 + AT_rich Low_complexity Low_complexity 1 55 0 5535 167 30 3 chr12 30493665 30494807 -113291648 + L1MC2 LINE L1 5024 6193 -151 672 311 70 4 chr12 30495223 30495451 -113291004 + MIR SINE MIR 13 255 -7 2266 188 12 2 chr12 30495497 30495911 -113290544 - MER44D DNA MER2_type -77 528 56 1147 238 99 60 chr12 30495915 30496347 -113290108 - MSTB2 LTR MaLR -8 449 1 258 276 0 0 chr12 30496350 30496408 -113290047 - MER44D DNA MER2_type -646 59 2 2078 62 0 8 chr12 30496620 30496907 -113289548 - AluY SINE Alu 0 313 29 833 254 125 30 chr12 30497000 30497303 -113289152 - MER74A LTR ERVL -2 556 225 36 40 0 0 chr12 30497422 30497472 -113288983 + AT_rich Low_complexity Low_complexity 1 50 0 23274 86 9 6 chr12 30497598 30503535 -113282920 - L1PA6 LINE L1 -7 6147 11 598 157 25 0 chr12 30503764 30503885 -113282570 - L1MB3 LINE L1 -7 6176 6053 2241 162 30 39 chr12 30503893 30504460 -113281995 - L1MA9 LINE L1 -10 6302 5677 * 5489 227 41 43 chr12 30504457 30504837 -113281618 - L1 LINE L1 -840 6008 5629 1305 69 0 0 chr12 30504837 30505010 -113281445 + (TTTC)n Simple_repeat Simple_repeat 1 173 0 2009 127 4 0 chr12 30505010 30505286 -113281169 - AluSp SINE Alu -36 277 1 5489 227 41 43 chr12 30505286 30507052 -113279403 - L1 LINE L1 -1217 5631 3747 2254 290 76 13 chr12 30507056 30508156 -113278299 - L1 LINE L1 -4170 2679 1510 511 321 32 74 chr12 30509340 30509745 -113276710 - L1 LINE L1 -5749 1030 643 * 1276 173 25 0 chr12 30509742 30509979 -113276476 - L1MB4 LINE L1 -118 6062 5820 5693 180 10 7 chr12 30510156 30511272 -113275183 - L1MC1 LINE L1 -27 6306 5184 1044 176 58 0 chr12 30511269 30511474 -113274981 - L1MB4 LINE L1 -345 5838 5622 * 1791 182 3 3 chr12 30512613 30512909 -113273546 + AluJo SINE Alu 1 296 -16 3246 198 94 18 chr12 30513082 30513860 -113272595 - Charlie6 DNA MER1_type -1056 2444 1608 5574 146 8 30 chr12 30513860 30514215 -113272240 - L1PA16 LINE L1 -22 6144 5783 396 0 0 0 chr12 30514215 30514259 -113272196 + (CA)n Simple_repeat Simple_repeat 2 45 0 5574 146 8 30 chr12 30514259 30514727 -113271728 - L1PA16 LINE L1 -383 5783 5345 2832 94 14 35 chr12 30514727 30515161 -113271294 - L1PA11 LINE L1 0 6174 5750 5574 146 8 30 chr12 30515161 30515584 -113270871 - L1PA16 LINE L1 -821 5345 4914 1485 228 71 32 chr12 30515585 30516020 -113270435 - Charlie6 DNA MER1_type -1877 1623 1172 3049 263 40 21 chr12 30516033 30517850 -113268605 - L1ME1 LINE L1 -117 6049 4199 345 333 33 7 chr12 30518201 30518354 -113268101 + MIR SINE MIR 23 179 -83 207 0 0 0 chr12 30518354 30518377 -113268078 + (TTA)n Simple_repeat Simple_repeat 3 25 0 422 39 0 0 chr12 30518377 30518429 -113268026 - L1PA7 LINE L1 -18 6136 6085 3366 84 4 13 chr12 30518529 30519004 -113267451 - L1PA7 LINE L1 -1 6153 5683 185 333 0 0 chr12 30519004 30519070 -113267385 + MIR SINE MIR 184 249 -13 326 311 99 56 chr12 30519108 30519481 -113266974 - MLT1K LTR MaLR -4 584 196 2036 127 0 7 chr12 30519812 30520221 -113266234 - AluSx SINE Alu 0 407 1 324 70 0 0 chr12 30520277 30520320 -113266135 + (CATA)n Simple_repeat Simple_repeat 2 44 0 245 29 29 0 chr12 30520464 30520498 -113265957 + (TC)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr12 30520498 30520525 -113265930 + (CA)n Simple_repeat Simple_repeat 1 27 0 405 310 19 60 chr12 30520967 30521183 -113265272 + L2 LINE L2 2293 2499 -815 2382 84 3 0 chr12 30521276 30521586 -113264869 - AluSp SINE Alu -2 311 1 398 89 0 0 chr12 30521625 30521681 -113264774 + MADE1 DNA Mariner 25 80 0 324 261 81 9 chr12 30522239 30522350 -113264105 - MLT1J2 LTR MaLR 0 450 332 348 178 27 0 chr12 30522507 30522580 -113263875 + L1ME2 LINE L1 6088 6162 -2 1499 219 104 39 chr12 30522971 30523459 -113262996 - MLT2B1 LTR ERVL 0 520 1 720 212 13 13 chr12 30525523 30525674 -113260781 - MER97a DNA MER1_type? -709 185 35 1404 195 9 124 chr12 30526073 30526540 -113259915 + MLT2D LTR ERVL 2 414 0 440 324 101 31 chr12 30527321 30527865 -113258590 + L1ME3A LINE L1 5269 5890 -280 228 35 0 0 chr12 30527946 30527975 -113258480 + (CA)n Simple_repeat Simple_repeat 2 30 0 478 286 17 79 chr12 30528153 30528394 -113258061 - LTR67 LTR ERVL -58 499 274 213 283 0 0 chr12 30529503 30529556 -113256899 + (TG)n Simple_repeat Simple_repeat 2 54 0 563 320 52 34 chr12 30529737 30530006 -113256449 - LTR33 LTR ERVL -247 274 1 287 347 47 13 chr12 30530304 30530454 -113256001 - ERVL LTR ERVL -440 5324 5170 340 291 14 54 chr12 30530467 30530615 -113255840 - LTR16C LTR ERVL -50 441 300 185 359 0 0 chr12 30531288 30531352 -113255103 + MIR3 SINE MIR 121 184 -24 5652 193 38 7 chr12 30532377 30532784 -113253671 + L1MC1 LINE L1 4341 4734 -1599 1348 225 39 11 chr12 30532784 30533139 -113253316 + MLT1A1 LTR MaLR 1 365 0 5652 193 38 7 chr12 30533139 30533704 -113252751 + L1MC1 LINE L1 4734 5280 -1053 2126 98 44 0 chr12 30533704 30534000 -113252455 + AluSc SINE Alu 1 309 0 5652 193 38 7 chr12 30534000 30534918 -113251537 + L1MC1 LINE L1 5280 6288 -45 288 317 10 0 chr12 30536535 30536639 -113249816 + MER94 DNA DNA 1 105 -29 1796 148 7 40 chr12 30536826 30537130 -113249325 - AluSx SINE Alu -18 294 1 417 298 53 18 chr12 30538527 30538698 -113247757 - MIR SINE MIR -20 242 66 279 398 16 8 chr12 30541545 30541673 -113244782 - L2 LINE L2 -3 3310 3182 890 228 126 33 chr12 30541741 30542178 -113244277 - L1ME2 LINE L1 -6 6158 5644 703 283 52 20 chr12 30542160 30542564 -113243891 - L1ME2 LINE L1 -743 5403 5000 * 1857 258 42 23 chr12 30542556 30543125 -113243330 - L1ME1 LINE L1 -4 6162 5583 556 309 50 23 chr12 30543134 30543393 -113243062 + L1M3d LINE L1 5 270 -5621 5100 167 30 25 chr12 30543393 30543872 -113242583 + L1MA7 LINE L1 4840 5315 -976 2238 73 13 3 chr12 30543872 30544172 -113242283 + AluSc SINE Alu 1 303 -6 5100 167 30 25 chr12 30544172 30545137 -113241318 + L1MA7 LINE L1 5315 6291 0 471 276 193 4 chr12 30545154 30545429 -113241026 - L1ME1 LINE L1 -583 5583 5257 8267 160 34 14 chr12 30545442 30546829 -113239626 - L1MA4 LINE L1 -11 6289 4835 2365 149 16 0 chr12 30546829 30547198 -113239257 + THE1C LTR MaLR 1 375 0 8267 160 34 14 chr12 30547198 30548345 -113238110 - L1MA4 LINE L1 -1465 4835 3712 413 281 168 0 chr12 30548346 30548542 -113237913 - L1ME1 LINE L1 -883 5263 5035 2703 250 65 17 chr12 30548554 30549503 -113236952 - L1ME1 LINE L1 -1265 4881 3887 2791 204 33 23 chr12 30549536 30549837 -113236618 - L1 LINE L1 -1429 4717 4421 2661 151 35 116 chr12 30549837 30550492 -113235963 + MER7C DNA MER2_type 1 602 0 2791 204 33 23 chr12 30550492 30550883 -113235572 - L1 LINE L1 -1725 4421 4018 317 226 55 71 chr12 30550907 30551062 -113235393 - MLT1L LTR MaLR -305 141 32 301 120 0 0 chr12 30551416 30551466 -113234989 - L1PA16 LINE L1 0 6166 6117 1719 172 26 13 chr12 30553064 30553372 -113233083 - AluJb SINE Alu 0 312 1 29 0 0 0 chr12 30554742 30554771 -113231684 + AT_rich Low_complexity Low_complexity 1 29 0 804 198 6 12 chr12 30554833 30555014 -113231441 - FRAM SINE Alu 0 176 1 373 297 105 93 chr12 30555702 30556110 -113230345 + LTR16C LTR ERVL 79 491 0 873 270 9 22 chr12 30556331 30556557 -113229898 + MER58A DNA MER1_type 1 223 -1 366 245 0 0 chr12 30557180 30557278 -113229177 + (TTTG)n Simple_repeat Simple_repeat 3 100 0 2451 84 0 6 chr12 30557512 30557823 -113228632 + AluSc SINE Alu 1 309 0 332 288 35 47 chr12 30558085 30558255 -113228200 + MER21-int LTR ERV1 3628 3795 -396 404 335 46 10 chr12 30558618 30558815 -113227640 + HERVL LTR ERVL 3600 3803 -1851 304 350 67 17 chr12 30559020 30559260 -113227195 + HERVL LTR ERVL 3949 4200 -1564 1091 378 21 11 chr12 30559348 30559978 -113226477 + HERVL LTR ERVL 4317 4952 -812 309 316 9 18 chr12 30560068 30560182 -113226273 + HERVL LTR ERVL 5040 5152 -502 404 376 38 35 chr12 30560734 30561053 -113225402 + LTR16C LTR ERVL 158 477 -14 234 320 147 0 chr12 30561063 30561138 -113225317 + L2 LINE L2 3096 3181 -91 33 43 0 0 chr12 30561152 30561199 -113225256 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr12 30561264 30561296 -113225159 + AT_rich Low_complexity Low_complexity 1 32 0 600 325 88 8 chr12 30561557 30561797 -113224658 - MIR SINE MIR 0 262 4 229 325 114 9 chr12 30562773 30562887 -113223568 + L2 LINE L2 3147 3272 0 180 328 0 0 chr12 30563404 30563465 -113222990 - L2 LINE L2 -358 2955 2895 183 338 68 40 chr12 30563707 30563750 -113222705 - L2 LINE L2 -918 2396 2356 2016 135 0 0 chr12 30563750 30564067 -113222388 - AluSx SINE Alu 0 317 1 183 338 68 40 chr12 30564067 30564170 -113222285 - L2 LINE L2 -958 2356 2245 532 280 28 0 chr12 30564495 30564638 -113221817 - MIR SINE MIR -59 203 57 183 129 0 0 chr12 30564967 30564998 -113221457 + (TG)n Simple_repeat Simple_repeat 2 32 0 825 286 48 0 chr12 30565242 30565469 -113220986 + MIR SINE MIR 25 262 0 570 329 147 52 chr12 30565609 30566204 -113220251 - L2 LINE L2 0 3272 2567 2075 125 3 0 chr12 30566204 30566500 -113219955 + AluSp SINE Alu 1 297 -16 570 329 147 52 chr12 30566500 30566835 -113219620 - L2 LINE L2 -705 2567 2265 280 349 72 48 chr12 30567103 30567352 -113219103 - L2 LINE L2 -2495 819 565 213 286 110 0 chr12 30567879 30567970 -113218485 - MIR3 SINE MIR -3 205 105 291 54 0 0 chr12 30568925 30568962 -113217493 + (TA)n Simple_repeat Simple_repeat 1 37 0 1059 308 45 26 chr12 30569623 30570049 -113216406 + L2 LINE L2 2879 3312 -1 286 364 61 20 chr12 30570259 30570457 -113215998 + MLT1K LTR MaLR 41 246 -342 568 338 71 30 chr12 30570606 30570872 -113215583 - L2 LINE L2 -5 3308 3032 24 0 0 0 chr12 30570928 30570952 -113215503 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr12 30570992 30571025 -113215430 + AT_rich Low_complexity Low_complexity 1 33 0 1852 136 59 67 chr12 30572541 30572608 -113213847 - L1MA9 LINE L1 0 6312 6246 186 43 0 0 chr12 30572608 30572631 -113213824 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 276 30 0 0 chr12 30572630 30572663 -113213792 + (CA)n Simple_repeat Simple_repeat 2 34 0 1852 136 59 67 chr12 30572631 30572768 -113213687 - L1MA9 LINE L1 -66 6246 6109 2222 118 0 3 chr12 30572768 30573072 -113213383 - AluSg SINE Alu -7 303 1 1852 136 59 67 chr12 30573072 30573288 -113213167 - L1MA9 LINE L1 -203 6109 5926 603 27 0 0 chr12 30573520 30573593 -113212862 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2787 233 59 24 chr12 30573718 30574560 -113211895 - L1MC4 LINE L1 -1 8041 7170 830 191 41 0 chr12 30574736 30574883 -113211572 - FRAM SINE Alu -23 153 1 300 296 106 28 chr12 30576384 30576526 -113209929 - L2 LINE L2 0 3313 3161 4013 24 0 4 chr12 30577645 30578179 -113208276 - L1PA2 LINE L1 -712 5443 4912 6279 19 4 0 chr12 30578179 30578903 -113207552 + L1PA2 LINE L1 5421 6153 -2 226 217 0 0 chr12 30579110 30579156 -113207299 + CT-rich Low_complexity Low_complexity 1 46 0 2500 242 69 14 chr12 30579262 30579677 -113206778 - MER76 LTR ERV -17 671 207 2336 165 21 0 chr12 30579677 30580059 -113206396 + MSTD LTR MaLR 5 394 -2 2500 242 69 14 chr12 30580059 30580279 -113206176 - MER76 LTR ERV -481 207 1 246 271 0 52 chr12 30580299 30580395 -113206060 + MIR SINE MIR 151 241 -21 22 0 0 0 chr12 30580395 30580417 -113206038 + AT_rich Low_complexity Low_complexity 1 22 0 206 121 30 0 chr12 30580427 30580460 -113205995 + MIR SINE MIR 226 259 -3 * 271 240 260 0 chr12 30580441 30580537 -113205918 + L2 LINE L2 2503 2623 -691 1160 214 67 43 chr12 30580625 30581041 -113205414 + L1MC5 LINE L1 7136 7561 -400 186 43 0 0 chr12 30581083 30581106 -113205349 + (CA)n Simple_repeat Simple_repeat 2 24 0 509 264 109 11 chr12 30581135 30581309 -113205146 - L1ME3 LINE L1 -151 6011 5821 2103 74 50 20 chr12 30581779 30582078 -113204377 + AluSx SINE Alu 1 308 -4 313 313 84 6 chr12 30582302 30582468 -113203987 - L1ME1 LINE L1 -4 6162 5984 2088 231 54 23 chr12 30582474 30582776 -113203679 - L1ME1 LINE L1 -279 5887 5596 1455 166 66 36 chr12 30582776 30583077 -113203378 + AluJb SINE Alu 2 311 -1 2088 231 54 23 chr12 30583077 30583452 -113203003 - L1ME1 LINE L1 -570 5596 5179 786 146 119 26 chr12 30583452 30583603 -113202852 - FRAM SINE Alu -1 165 1 2088 231 54 23 chr12 30583603 30583781 -113202674 - L1ME1 LINE L1 -987 5179 5008 616 253 14 92 chr12 30583784 30584077 -113202378 - MER93b LTR ERV1 0 373 104 1444 265 80 16 chr12 30584199 30584937 -113201518 - L1MEc LINE L1 -1089 5126 4301 366 283 28 0 chr12 30584965 30585110 -113201345 - L1MEc LINE L1 -2734 3481 3333 1534 168 75 40 chr12 30585110 30585245 -113201210 + MLT1B LTR MaLR 1 130 -260 2011 134 17 3 chr12 30585245 30585536 -113200919 - AluSx SINE Alu -17 295 1 1534 168 75 40 chr12 30585536 30585573 -113200882 + MLT1B LTR MaLR 130 164 -226 189 0 0 0 chr12 30585573 30585594 -113200861 + (TC)n Simple_repeat Simple_repeat 2 22 0 1534 168 75 40 chr12 30585594 30585795 -113200660 + MLT1B LTR MaLR 164 388 -2 4479 221 85 52 chr12 30585799 30587123 -113199332 + MLT1B-int LTR MaLR 4 1370 -1 938 236 38 124 chr12 30587124 30587551 -113198904 + MLT1B LTR MaLR 1 390 0 326 194 151 43 chr12 30587752 30587845 -113198610 + MLT1B LTR MaLR 1 103 -287 * 1633 176 113 36 chr12 30587834 30588225 -113198230 - MLT2B1 LTR ERVL -99 421 1 255 189 113 44 chr12 30588228 30588387 -113198068 - L1MEc LINE L1 -2912 3303 3134 482 228 80 25 chr12 30588459 30588696 -113197759 - L1MEc LINE L1 -5331 1065 816 1881 196 44 5 chr12 30588703 30589137 -113197318 - L1MC2 LINE L1 -13 6331 5881 948 260 63 32 chr12 30589143 30589554 -113196901 - L1MEc LINE L1 -5919 477 54 2319 145 30 35 chr12 30589774 30590208 -113196247 - MSTB1 LTR MaLR 0 432 1 784 337 116 0 chr12 30591591 30591989 -113194466 - L3 LINE CR1 -6 1571 1128 622 216 216 0 chr12 30592709 30592838 -113193617 + MER3 DNA MER1_type 2 102 -107 204 67 0 0 chr12 30592838 30592868 -113193587 + (TTTAA)n Simple_repeat Simple_repeat 1 30 0 622 216 216 0 chr12 30592868 30592905 -113193550 + MER3 DNA MER1_type 102 204 -5 286 22 65 0 chr12 30593792 30593838 -113192617 + A-rich Low_complexity Low_complexity 3 51 0 427 165 66 0 chr12 30594175 30594266 -113192189 - MLT1G LTR MaLR -12 543 447 1338 108 38 58 chr12 30594298 30594538 -113191917 - L1PA8 LINE L1 -6 6166 5932 1501 67 0 0 chr12 30594540 30594748 -113191707 + L1PA8 LINE L1 5724 5931 -241 843 235 135 43 chr12 30594758 30595113 -113191342 - MLT1G LTR MaLR -113 454 98 2284 67 7 11 chr12 30595113 30595397 -113191058 - AluSc SINE Alu -13 296 14 843 235 135 43 chr12 30595397 30595504 -113190951 - MLT1G LTR MaLR -469 98 2 228 122 0 0 chr12 30596116 30596157 -113190298 + (TTTTTA)n Simple_repeat Simple_repeat 5 45 0 555 292 119 26 chr12 30603282 30603508 -113182947 - MIR SINE MIR 0 262 16 25 31 0 0 chr12 30604423 30604455 -113182000 + AT_rich Low_complexity Low_complexity 1 32 0 449 240 19 29 chr12 30604848 30604952 -113181503 - MER5A DNA MER1_type -77 112 10 246 62 0 0 chr12 30604982 30605014 -113181441 + (TG)n Simple_repeat Simple_repeat 1 32 0 1781 139 0 45 chr12 30605623 30605911 -113180544 - AluSx SINE Alu -37 275 1 181 328 187 45 chr12 30606967 30607101 -113179354 - MIR3 SINE MIR -23 185 33 188 238 63 16 chr12 30607766 30607829 -113178626 + L3 LINE CR1 1505 1570 -7 190 398 17 23 chr12 30609202 30609378 -113177077 - L2 LINE L2 -214 3058 2884 1975 136 11 0 chr12 30609751 30610037 -113176418 - AluJb SINE Alu -23 289 1 323 130 19 0 chr12 30610347 30610401 -113176054 + AluJb SINE Alu 87 141 -161 474 319 107 9 chr12 30611103 30611319 -113175136 - MIR SINE MIR -18 244 8 228 355 18 9 chr12 30611832 30611942 -113174513 + L3b LINE CR1 1111 1221 -362 328 276 112 47 chr12 30613662 30613832 -113172623 + MIR SINE MIR 76 256 -6 2042 126 0 26 chr12 30613892 30614201 -113172254 - AluSg SINE Alu -9 301 1 410 298 83 30 chr12 30614273 30614441 -113172014 - MIR SINE MIR -56 206 30 204 152 45 0 chr12 30614703 30614769 -113171686 + (TA)n Simple_repeat Simple_repeat 1 69 0 1857 257 89 7 chr12 30614778 30615781 -113170674 - L1ME3A LINE L1 -258 6192 5104 1062 167 56 123 chr12 30615855 30616154 -113170301 - AluJo SINE Alu 0 324 44 232 244 118 59 chr12 30616178 30616416 -113170039 - L1ME3A LINE L1 -1487 4939 4688 21 0 0 0 chr12 30617341 30617362 -113169093 + AT_rich Low_complexity Low_complexity 1 21 0 441 252 64 41 chr12 30617397 30617711 -113168744 - L1ME3A LINE L1 -3575 2851 2531 267 240 86 0 chr12 30618024 30618164 -113168291 - L1MEc LINE L1 -4734 1873 1525 375 300 158 16 chr12 30619542 30619732 -113166723 - MIR SINE MIR -21 241 25 184 274 0 88 chr12 30621397 30621499 -113164956 - MER5A DNA MER1_type -34 155 63 323 307 53 9 chr12 30622622 30622736 -113163719 + MIR3 SINE MIR 89 207 -1 482 256 66 54 chr12 30622926 30623184 -113163271 - MIR SINE MIR 0 262 2 21 0 0 0 chr12 30623753 30623774 -113162681 + AT_rich Low_complexity Low_complexity 1 21 0 305 329 93 56 chr12 30624362 30624578 -113161877 + L2 LINE L2 2944 3167 -105 1448 236 22 14 chr12 30624831 30625192 -113161263 - MER39 LTR ERV1 0 707 344 413 210 79 54 chr12 30625191 30625327 -113161128 - MER39 LTR ERV1 -447 138 5 * 2427 38 0 3 chr12 30625516 30625832 -113160623 + AluY SINE Alu 1 315 0 180 0 0 0 chr12 30625835 30625855 -113160600 + (GAAAA)n Simple_repeat Simple_repeat 5 24 0 223 229 49 16 chr12 30626180 30626241 -113160214 + L2 LINE L2 3210 3272 0 188 384 48 14 chr12 30626488 30626634 -113159821 - L2 LINE L2 -2 3311 3161 234 333 55 0 chr12 30627178 30627268 -113159187 + MIR SINE MIR 41 137 -71 182 272 105 35 chr12 30627447 30627561 -113158894 + MIR SINE MIR 39 160 -102 414 39 0 0 chr12 30627653 30627705 -113158750 + (CA)n Simple_repeat Simple_repeat 1 52 0 207 0 0 0 chr12 30628152 30628175 -113158280 + (TG)n Simple_repeat Simple_repeat 2 24 0 286 325 73 16 chr12 30630497 30630620 -113155835 - MIR3 SINE MIR -54 154 25 3458 71 16 0 chr12 30630768 30631204 -113155251 + MLT2A1 LTR ERVL 2 444 0 216 0 0 0 chr12 30631300 30631324 -113155131 + (CA)n Simple_repeat Simple_repeat 2 25 0 2729 202 23 23 chr12 30631452 30632146 -113154309 - L1MC3 LINE L1 0 7785 7092 23 24 0 24 chr12 30634563 30634584 -113151871 + AT_rich Low_complexity Low_complexity 1 22 -18 1671 54 27 0 chr12 30634584 30634806 -113151649 - L1MA1 LINE L1 0 6302 6075 23 24 0 24 chr12 30634806 30634825 -113151630 + AT_rich Low_complexity Low_complexity 22 40 0 488 304 81 6 chr12 30635756 30635917 -113150538 - MIR SINE MIR -70 192 20 325 230 53 10 chr12 30636246 30636392 -113150063 - MLT1I LTR MaLR 0 527 316 328 339 85 16 chr12 30637052 30637300 -113149155 - L2 LINE L2 -882 2432 2168 270 233 22 11 chr12 30638429 30638519 -113147936 + (TA)n Simple_repeat Simple_repeat 1 91 0 269 290 328 0 chr12 30638638 30638769 -113147686 + MIR SINE MIR 19 192 -70 737 321 19 0 chr12 30638797 30639006 -113147449 - MIR SINE MIR -21 241 29 21 36 0 0 chr12 30639341 30639369 -113147086 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr12 30639968 30639995 -113146460 + AT_rich Low_complexity Low_complexity 1 27 0 2172 281 117 29 chr12 30642108 30643643 -113142812 + L1ME2 LINE L1 3240 4909 -1237 560 247 86 6 chr12 30643692 30643854 -113142601 + L1ME3A LINE L1 5975 6149 -21 2829 145 14 6 chr12 30644888 30645379 -113141076 + L1MB3 LINE L1 5675 6169 -14 236 363 60 49 chr12 30645996 30646291 -113140164 + L2 LINE L2 2765 3059 -213 1007 251 27 0 chr12 30647360 30647583 -113138872 + MIR SINE MIR 1 229 -33 233 57 29 0 chr12 30648349 30648384 -113138071 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 1029 256 109 30 chr12 30649983 30650386 -113136069 + L1ME2 LINE L1 5660 6094 -70 * 5337 158 17 6 chr12 30650384 30651703 -113134752 + L1P4 LINE L1 4305 5629 -534 1843 157 3 20 chr12 30652554 30652860 -113133595 - AluJo SINE Alu -11 301 1 22 35 0 0 chr12 30653311 30653340 -113133115 + AT_rich Low_complexity Low_complexity 1 29 0 377 278 109 70 chr12 30654048 30654278 -113132177 - HAL1 LINE L1 -77 2430 2192 384 22 0 0 chr12 30654288 30654333 -113132122 + (TTTTG)n Simple_repeat Simple_repeat 3 47 0 781 257 182 75 chr12 30654335 30654818 -113131637 + LTR67 LTR ERVL 19 553 -4 670 319 4 23 chr12 30655381 30655644 -113130811 - HAL1 LINE L1 -717 1790 1533 198 71 0 0 chr12 30657231 30657259 -113129196 + (A)n Simple_repeat Simple_repeat 1 28 0 184 309 31 52 chr12 30658039 30658136 -113128319 + MIR SINE MIR 83 177 -85 536 167 158 0 chr12 30658147 30658261 -113128194 - L1MC2 LINE L1 -11 6333 6202 242 337 11 11 chr12 30659193 30659282 -113127173 - MER5B DNA MER1_type -1 177 89 649 242 96 32 chr12 30659426 30659707 -113126748 + L1ME4a LINE L1 5620 5918 -203 1023 184 114 145 chr12 30659791 30660138 -113126317 - MLT2B1 LTR ERVL 0 520 194 426 69 0 0 chr12 30660138 30660196 -113126259 + (TG)n Simple_repeat Simple_repeat 1 58 0 1023 184 114 145 chr12 30660196 30660385 -113126070 - MLT2B1 LTR ERVL -326 194 1 24 0 0 0 chr12 30661117 30661141 -113125314 + AT_rich Low_complexity Low_complexity 1 24 0 1309 178 0 13 chr12 30662069 30662305 -113124150 - MER46A DNA MER2_type -3 233 1 5075 101 40 6 chr12 30662476 30663252 -113123203 - L1MA3 LINE L1 0 6305 5504 334 270 122 41 chr12 30663586 30663782 -113122673 - MIR SINE MIR -50 212 1 25 31 0 0 chr12 30663826 30663858 -113122597 + AT_rich Low_complexity Low_complexity 1 32 0 2242 160 57 0 chr12 30663909 30664315 -113122140 + MSTB1 LTR MaLR 4 432 0 707 244 15 4 chr12 30664619 30664784 -113121671 + MIR SINE MIR 67 231 -31 27 29 0 0 chr12 30664820 30664854 -113121601 + AT_rich Low_complexity Low_complexity 1 34 0 1053 182 0 0 chr12 30665080 30665256 -113121199 - MER46A DNA MER2_type -2 234 59 1047 106 11 11 chr12 30665258 30665670 -113120785 + (GAAA)n Simple_repeat Simple_repeat 1 412 0 1392 233 136 17 chr12 30665679 30666099 -113120356 + MLT1E LTR MaLR 122 591 -2 394 285 3 31 chr12 30666449 30666758 -113119697 + G-rich Low_complexity Low_complexity 1 300 0 3833 96 36 3 chr12 30666834 30667409 -113119046 + L1PA13 LINE L1 5570 6163 0 284 339 23 0 chr12 30667513 30667643 -113118812 + L1ME LINE L1 5486 5618 -546 323 224 35 0 chr12 30667924 30668009 -113118446 - MIR SINE MIR -11 251 164 261 241 0 0 chr12 30668227 30668281 -113118174 + (CA)n Simple_repeat Simple_repeat 1 54 0 974 272 20 8 chr12 30669026 30669280 -113117175 + MIR SINE MIR 5 261 -1 827 318 55 21 chr12 30669872 30670067 -113116388 - L3 LINE CR1 -630 947 735 2217 135 28 6 chr12 30670067 30670423 -113116032 - THE1B LTR MaLR 0 364 1 827 318 55 21 chr12 30670423 30670557 -113115898 - L3 LINE CR1 -842 735 607 335 244 76 34 chr12 30670891 30671010 -113115445 - MER103 DNA DNA -2 164 41 210 37 0 0 chr12 30672457 30672484 -113113971 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr12 30672631 30672652 -113113803 + AT_rich Low_complexity Low_complexity 1 21 0 1383 279 44 23 chr12 30674568 30675152 -113111303 + L2 LINE L2 2714 3309 -4 1547 174 3 38 chr12 30675513 30675806 -113110649 - AluJo SINE Alu -20 292 10 456 215 0 0 chr12 30677218 30677311 -113109144 + L1MC3 LINE L1 6765 6857 -928 218 258 30 30 chr12 30677321 30677387 -113109068 - MER5A DNA MER1_type -117 72 7 865 275 90 60 chr12 30677741 30678309 -113108146 - HAL1 LINE L1 -713 1794 1210 1871 117 0 29 chr12 30678399 30678673 -113107782 - AluSg SINE Alu -44 266 1 225 154 0 0 chr12 30678779 30678818 -113107637 + T-rich Low_complexity Low_complexity 1 39 0 2171 132 0 0 chr12 30679460 30679763 -113106692 - AluSx SINE Alu -7 305 3 207 208 0 19 chr12 30679968 30680021 -113106434 + T-rich Low_complexity Low_complexity 4 55 0 318 296 61 35 chr12 30680023 30680138 -113106317 + MIR SINE MIR 3 120 -142 472 309 48 18 chr12 30680269 30680437 -113106018 - MER5B DNA MER1_type -2 176 4 27 29 0 0 chr12 30680868 30680902 -113105553 + AT_rich Low_complexity Low_complexity 1 34 0 330 214 130 53 chr12 30681535 30681666 -113104789 - MIR SINE MIR -34 228 88 240 191 213 106 chr12 30681659 30681800 -113104655 + MER5A DNA MER1_type 10 165 -24 * 2566 86 3 3 chr12 30684069 30684417 -113102038 - THE1A LTR MaLR -7 348 1 6893 158 53 20 chr12 30686333 30688279 -113098176 - L1PBa LINE L1 -2135 4727 2790 2114 119 0 0 chr12 30688279 30688572 -113097883 - AluSc SINE Alu -16 293 1 6893 158 53 20 chr12 30688572 30689561 -113096894 - L1PBa LINE L1 -4072 2790 1835 11618 232 27 16 chr12 30689564 30691004 -113095451 - L1PA16 LINE L1 -173 6644 5221 2329 114 16 47 chr12 30691004 30691391 -113095064 + THE1C LTR MaLR 1 375 0 11618 232 27 16 chr12 30691391 30692408 -113094047 - L1PA16 LINE L1 -1596 5221 4216 1877 156 0 4 chr12 30692408 30692712 -113093743 - AluSg SINE Alu 0 314 12 11618 232 27 16 chr12 30692712 30695314 -113091141 - L1PA16 LINE L1 -2601 4216 1509 315 338 8 15 chr12 30696190 30696323 -113090132 - L1PA16 LINE L1 -5276 1511 1380 1165 343 44 19 chr12 30696370 30696938 -113089517 - L1PA16 LINE L1 -6200 587 6 4089 211 45 21 chr12 30696956 30698078 -113088377 - L1M2 LINE L1 -4334 2515 1368 384 287 78 30 chr12 30698788 30698955 -113087500 + L1MEc LINE L1 2024 2198 -4198 526 235 23 60 chr12 30698963 30699180 -113087275 + L1MEc LINE L1 2206 2414 -3801 950 266 51 0 chr12 30699183 30699420 -113087035 - MLT1E LTR MaLR -60 533 285 374 207 0 0 chr12 30699480 30699579 -113086876 + L1MEc LINE L1 2686 2784 -3431 367 176 0 0 chr12 30699579 30699653 -113086802 + MLT1E LTR MaLR 520 593 0 838 272 46 37 chr12 30699698 30699832 -113086623 + L1MEc LINE L1 4108 4239 -1976 7480 127 47 4 chr12 30699832 30699878 -113086577 - HSMAR2 DNA Mariner -2 1300 1257 198 103 0 0 chr12 30699878 30699907 -113086548 + (TA)n Simple_repeat Simple_repeat 1 29 0 7480 127 47 4 chr12 30699907 30701104 -113085351 - HSMAR2 DNA Mariner -45 1257 3 838 272 46 37 chr12 30701104 30701318 -113085137 + L1MEc LINE L1 4239 4459 -1756 383 329 155 44 chr12 30701394 30701710 -113084745 - L2 LINE L2 -443 2871 2521 349 338 73 28 chr12 30702114 30702401 -113084054 - L2 LINE L2 0 3313 3014 7214 171 35 13 chr12 30702835 30703030 -113083425 + L1M2 LINE L1 3661 3850 -2296 1947 143 26 54 chr12 30703030 30703416 -113083039 - THE1C LTR MaLR 0 375 1 7214 171 35 13 chr12 30703416 30704785 -113081670 + L1M2 LINE L1 3850 5259 -887 290 186 0 0 chr12 30704798 30704868 -113081587 + L1M2 LINE L1 5390 5459 -832 965 234 43 40 chr12 30704905 30705050 -113081405 - MLT1J LTR MaLR -205 306 163 2492 129 3 3 chr12 30705050 30705414 -113081041 + THE1B LTR MaLR 1 364 0 10111 109 37 37 chr12 30705414 30706994 -113079461 + THE1B-int LTR MaLR 1 1580 0 2249 118 27 33 chr12 30706994 30707360 -113079095 + THE1B LTR MaLR 1 364 0 965 234 43 40 chr12 30707360 30707515 -113078940 - MLT1J LTR MaLR -347 164 3 906 259 18 0 chr12 30707594 30707814 -113078641 - MER58A DNA MER1_type 0 224 1 2294 134 29 26 chr12 30707820 30708239 -113078216 - MSTB LTR MaLR -5 421 2 200 349 15 15 chr12 30708272 30708338 -113078117 + L2 LINE L2 3157 3222 -50 7375 37 3 0 chr12 30708366 30709295 -113077160 + L1PA3 LINE L1 5224 6155 0 432 0 0 0 chr12 30709459 30709507 -113076948 + (TG)n Simple_repeat Simple_repeat 2 49 0 4129 143 11 22 chr12 30709625 30710365 -113076090 - MER49 LTR ERV1 -187 736 5 1982 106 0 46 chr12 30710694 30710997 -113075458 - AluSg SINE Alu -21 289 1 270 180 0 0 chr12 30711250 30711300 -113075155 - MER96B DNA MER1_type? -175 242 193 463 201 71 24 chr12 30711581 30711750 -113074705 - MER96B DNA MER1_type? -239 178 2 668 152 9 0 chr12 30713694 30713806 -113072649 + L1MC/D LINE L1 5672 5784 -560 3542 168 31 31 chr12 30713806 30714507 -113071948 - MER44D DNA MER2_type -4 701 1 1094 179 25 145 chr12 30714507 30714745 -113071710 - MLT1B LTR MaLR -32 358 188 2028 129 3 16 chr12 30714745 30715048 -113071407 - AluSg SINE Alu -11 299 1 1094 179 25 145 chr12 30715048 30715216 -113071239 - MLT1B LTR MaLR -202 188 1 427 254 8 74 chr12 30715284 30715406 -113071049 - MIR SINE MIR -147 115 2 776 218 19 51 chr12 30716286 30716502 -113069953 + MER3 DNA MER1_type 1 209 0 386 282 8 16 chr12 30718631 30718755 -113067700 + MLT1H LTR MaLR 38 160 -389 317 341 73 55 chr12 30719060 30719224 -113067231 - L2 LINE L2 -15 3257 3091 615 290 28 16 chr12 30720199 30720454 -113066001 + MIR SINE MIR 2 259 -3 291 233 55 110 chr12 30720526 30720599 -113065856 - MIR3 SINE MIR -10 198 135 291 28 0 0 chr12 30720599 30720635 -113065820 + (CA)n Simple_repeat Simple_repeat 2 37 0 291 233 55 110 chr12 30720635 30720707 -113065748 - MIR3 SINE MIR -73 135 61 417 66 0 0 chr12 30721228 30721289 -113065166 + (CA)n Simple_repeat Simple_repeat 2 62 0 2239 123 0 0 chr12 30724752 30725053 -113061402 + AluSx SINE Alu 1 301 -11 1752 187 74 60 chr12 30725157 30725644 -113060811 + MLT1D LTR MaLR 12 505 0 267 362 55 36 chr12 30726374 30726681 -113059774 + L2 LINE L2 1772 2084 -1230 685 133 46 67 chr12 30726953 30727148 -113059307 - L1MA7 LINE L1 -1 6290 6100 180 245 38 0 chr12 30727199 30727252 -113059203 - L3 LINE CR1 -995 582 528 25 0 0 0 chr12 30727491 30727516 -113058939 + AT_rich Low_complexity Low_complexity 1 25 0 38062 37 56 1 chr12 30728411 30734235 -113052220 - L1PA2 LINE L1 -2 6153 3 614 264 72 11 chr12 30734371 30734720 -113051735 + L1M4 LINE L1 5012 5381 -765 1244 191 22 4 chr12 30735259 30735532 -113050923 - L1M4 LINE L1 -605 5815 5538 * 1643 234 139 28 chr12 30735527 30735670 -113050785 - L1M4 LINE L1 -3450 2932 2806 1973 146 0 7 chr12 30735670 30735964 -113050491 + AluSx SINE Alu 1 292 -20 1643 234 139 28 chr12 30735964 30737252 -113049203 - L1M4 LINE L1 -3576 2806 1321 1792 220 19 3 chr12 30737263 30737622 -113048833 + Tigger7 DNA MER2_type 2 366 -2121 315 391 99 18 chr12 30739180 30739635 -113046820 - L2 LINE L2 -583 2731 2240 1642 160 114 58 chr12 30740737 30741130 -113045325 - MSTA LTR MaLR -13 415 1 7293 183 106 1 chr12 30741130 30742624 -113043831 - MSTA-int LTR MaLR 0 1651 1 1718 175 146 13 chr12 30742624 30743002 -113043453 - MSTA LTR MaLR 0 428 1 181 301 0 36 chr12 30743005 30743088 -113043367 - L2 LINE L2 -1291 2023 1944 1149 157 77 28 chr12 30743422 30743615 -113042840 + MLT1C LTR MaLR 3 212 -255 381 43 0 0 chr12 30743615 30743662 -113042793 + (CA)n Simple_repeat Simple_repeat 2 48 0 1149 157 77 28 chr12 30743662 30743716 -113042739 + MLT1C LTR MaLR 212 262 -205 2121 130 72 17 chr12 30743716 30744061 -113042394 - THE1B LTR MaLR 0 364 1 10516 103 31 0 chr12 30744069 30745594 -113040861 - THE1B-int LTR MaLR -8 1572 1 2053 136 72 20 chr12 30745594 30745940 -113040515 - THE1B LTR MaLR 0 364 1 960 218 10 0 chr12 30745940 30746146 -113040309 + MLT1C LTR MaLR 258 465 -2 185 255 314 0 chr12 30747032 30747134 -113039321 - MIR SINE MIR -77 185 52 408 277 8 0 chr12 30748656 30748775 -113037680 + MER103 DNA DNA 33 152 -14 233 344 61 0 chr12 30750172 30750303 -113036152 - MIR3 SINE MIR -6 202 64 25 31 0 0 chr12 30750449 30750481 -113035974 + AT_rich Low_complexity Low_complexity 1 32 0 301 258 125 16 chr12 30751015 30751143 -113035312 - L2 LINE L2 0 3313 3172 6448 126 9 30 chr12 30752051 30752563 -113033892 + L1MA2 LINE L1 4812 5333 -971 368 91 212 0 chr12 30752563 30752629 -113033826 + MADE1 DNA Mariner 1 80 0 6448 126 9 30 chr12 30752629 30753643 -113032812 + L1MA2 LINE L1 5333 6304 0 308 358 108 50 chr12 30753855 30753909 -113032546 - L2 LINE L2 -353 2961 2912 1836 225 57 97 chr12 30753909 30754198 -113032257 + MLT1E1 LTR MaLR 1 300 -354 2329 101 0 0 chr12 30754198 30754495 -113031960 - AluY SINE Alu -14 297 1 1836 225 57 97 chr12 30754495 30754886 -113031569 + MLT1E1 LTR MaLR 300 654 0 308 358 108 50 chr12 30754886 30755914 -113030541 - L2 LINE L2 -402 2912 1816 3015 192 68 51 chr12 30756020 30756947 -113029508 + L1MB8 LINE L1 5198 6140 -38 22 0 0 0 chr12 30756961 30756983 -113029472 + AT_rich Low_complexity Low_complexity 1 22 0 349 263 33 59 chr12 30758770 30758922 -113027533 + MIR SINE MIR 13 160 -102 220 150 17 50 chr12 30758946 30759006 -113027449 + (TA)n Simple_repeat Simple_repeat 2 59 0 403 309 30 121 chr12 30759350 30759781 -113026674 - L2 LINE L2 -6 3266 2875 880 61 0 17 chr12 30759837 30759952 -113026503 + AluSg/x SINE Alu 200 312 0 623 251 37 0 chr12 30759991 30760154 -113026301 - MLT1E1 LTR MaLR -393 261 93 236 266 0 31 chr12 30760783 30760847 -113025608 + MLT1K LTR MaLR 188 249 -339 630 285 40 24 chr12 30761275 30761524 -113024931 + MIR SINE MIR 3 255 -7 2235 122 0 6 chr12 30763842 30764275 -113022180 - AluSx SINE Alu 0 433 3 220 346 122 56 chr12 30764992 30765206 -113021249 - L2 LINE L2 -181 3091 2864 587 354 70 34 chr12 30765411 30765999 -113020456 - L2 LINE L2 -643 2671 2063 265 350 55 32 chr12 30767210 30767430 -113019025 - MIR SINE MIR 0 262 38 1885 109 4 0 chr12 30768484 30768740 -113017715 + AluSx SINE Alu 1 257 -55 226 297 64 59 chr12 30770702 30770904 -113015551 + L2 LINE L2 3075 3277 -36 246 193 175 0 chr12 30772086 30772143 -113014312 - MIR3 SINE MIR -15 193 127 2352 100 7 0 chr12 30772252 30772551 -113013904 - AluSx SINE Alu -11 301 1 400 287 8 31 chr12 30772617 30772746 -113013709 - L2 LINE L2 0 3313 3188 1907 183 93 16 chr12 30773100 30773531 -113012924 + MLT1C LTR MaLR 1 464 -3 286 111 111 0 chr12 30773582 30773636 -113012819 - MLT1C LTR MaLR -371 96 37 671 232 0 0 chr12 30775028 30775153 -113011302 + FLAM_C SINE Alu 1 125 -18 909 325 8 0 chr12 30775266 30775515 -113010940 + MIR SINE MIR 8 258 -4 330 297 110 26 chr12 30776464 30776619 -113009836 - MIR3 SINE MIR 0 208 41 225 431 0 15 chr12 30777065 30777202 -113009253 - L3 LINE CR1 -377 1200 1066 311 270 61 40 chr12 30779080 30779228 -113007227 + HAL1 LINE L1 1313 1463 -1044 213 39 0 0 chr12 30779267 30779293 -113007162 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 813 157 15 12 chr12 30779295 30779708 -113006747 + GA-rich Low_complexity Low_complexity 1 414 0 570 260 101 28 chr12 30779742 30780030 -113006425 + L1 LINE L1 3071 3379 -2767 1015 193 56 5 chr12 30780277 30780474 -113005981 - MER21B LTR ERV1 -124 739 533 250 162 0 0 chr12 30782459 30782496 -113003959 - MSTB LTR MaLR -129 297 261 358 191 12 48 chr12 30782668 30782752 -113003703 + MER58A DNA MER1_type 1 81 -26 1098 259 26 10 chr12 30782752 30783057 -113003398 - MER93a LTR ERV1 0 402 93 671 181 42 14 chr12 30783180 30783324 -113003131 + MER58A DNA MER1_type 74 221 -3 1823 159 7 26 chr12 30783817 30784125 -113002330 + AluJb SINE Alu 5 306 -6 300 337 114 10 chr12 30784809 30785002 -113001453 + MIR SINE MIR 34 246 -16 1087 163 91 10 chr12 30785854 30786063 -113000392 - AluJb SINE Alu -23 289 64 468 134 0 0 chr12 30786063 30786130 -113000325 + AluJb SINE Alu 52 118 -194 42 20 0 0 chr12 30786130 30786179 -113000276 + AT_rich Low_complexity Low_complexity 1 49 0 634 221 42 11 chr12 30786185 30786375 -113000080 + L1M4c LINE L1 1306 1501 -4883 660 294 16 102 chr12 30786391 30786772 -112999683 - L2 LINE L2 -2672 642 295 310 328 41 51 chr12 30786797 30786992 -112999463 + HAL1b LINE L1 105 297 -1051 24 32 0 0 chr12 30787031 30787062 -112999393 + AT_rich Low_complexity Low_complexity 1 31 0 2052 151 0 7 chr12 30787260 30787565 -112998890 + AluSx SINE Alu 1 303 -9 288 172 0 78 chr12 30787867 30787931 -112998524 - MER21B LTR ERV1 -804 59 1 533 297 56 36 chr12 30787942 30788581 -112997874 + L1 LINE L1 3632 4283 -1863 381 274 81 58 chr12 30788584 30788754 -112997701 + L1 LINE L1 4328 4506 -1640 1823 188 3 7 chr12 30788754 30789062 -112997393 + AluJb SINE Alu 1 307 -5 381 274 81 58 chr12 30789062 30789114 -112997341 + L1 LINE L1 4506 4555 -1591 185 320 21 31 chr12 30789435 30789532 -112996923 + L2 LINE L2 1950 2045 -1269 319 253 0 0 chr12 30789547 30789626 -112996829 + MER34 LTR ERV1 1 79 -463 2134 20 0 0 chr12 30789953 30790200 -112996255 + L1PA3 LINE L1 5909 6155 0 343 270 63 9 chr12 30790256 30790367 -112996088 + MER34 LTR ERV1 381 497 -45 562 87 10 48 chr12 30790474 30790577 -112995878 + L1PA3 LINE L1 6057 6155 0 416 264 54 31 chr12 30790630 30790759 -112995696 + MER34 LTR ERV1 381 512 -30 1615 220 95 64 chr12 30790873 30791696 -112994759 + Charlie2 DNA MER1_type 2015 2862 0 288 0 0 0 chr12 30793565 30793597 -112992858 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 269 169 17 0 chr12 30794062 30794121 -112992334 + CT-rich Low_complexity Low_complexity 1 60 0 309 352 102 67 chr12 30797251 30797683 -112988772 - L2 LINE L2 -497 2817 2371 280 290 56 31 chr12 30797694 30797856 -112988599 - L2 LINE L2 -1259 2055 1890 190 286 0 0 chr12 30798009 30798058 -112988397 + L2 LINE L2 3177 3225 -88 186 221 15 73 chr12 30798128 30798196 -112988259 + L2 LINE L2 3246 3309 -4 365 289 74 32 chr12 30799275 30799465 -112986990 - MIR3 SINE MIR -7 201 4 252 0 0 0 chr12 30799470 30799498 -112986957 + (CA)n Simple_repeat Simple_repeat 1 28 0 1236 35 0 29 chr12 30800655 30800828 -112985627 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 21 57 0 0 chr12 30801407 30801442 -112985013 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr12 30801716 30801758 -112984697 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr12 30801894 30801929 -112984526 + AT_rich Low_complexity Low_complexity 1 35 0 314 343 69 23 chr12 30802123 30802339 -112984116 - L3b LINE CR1 -115 1468 1243 764 125 8 0 chr12 30802809 30802937 -112983518 + (TAGA)n Simple_repeat Simple_repeat 4 132 0 200 257 10 69 chr12 30803612 30803713 -112982742 + L2 LINE L2 2927 3021 -251 523 353 140 25 chr12 30804195 30804824 -112981631 - L2 LINE L2 -583 2731 2031 5694 228 48 51 chr12 30804851 30807078 -112979377 + L1M4 LINE L1 3267 5481 -693 2252 126 0 0 chr12 30807078 30807388 -112979067 + AluSx SINE Alu 1 310 -2 5694 228 48 51 chr12 30807388 30807490 -112978965 + L1M4 LINE L1 5481 5582 -592 2113 106 0 33 chr12 30807490 30807793 -112978662 + AluSq SINE Alu 21 313 0 1172 259 11 32 chr12 30807793 30808079 -112978376 - L1MCc LINE L1 -6043 380 102 180 0 0 0 chr12 30808079 30808099 -112978356 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1172 259 11 32 chr12 30808099 30808183 -112978272 - L1MCc LINE L1 -6321 102 18 733 273 139 5 chr12 30808184 30808631 -112977824 - L1MEc LINE L1 -2696 3519 3013 * 14401 187 11 22 chr12 30808629 30808780 -112977675 - L1PA15 LINE L1 -5 6811 6660 2185 115 3 0 chr12 30808780 30809085 -112977370 - AluSp SINE Alu -2 311 6 14401 187 11 22 chr12 30809085 30810270 -112976185 - L1PA15 LINE L1 -156 6660 5464 2128 149 25 0 chr12 30810270 30810625 -112975830 - THE1B LTR MaLR 0 364 1 14401 187 11 22 chr12 30810625 30813354 -112973101 - L1PA15 LINE L1 -1352 5464 2778 4738 52 2 0 chr12 30813338 30814249 -112972206 - L1PA5 LINE L1 -457 5697 4785 * 3697 48 0 2 chr12 30814249 30814691 -112971764 + L1PA5 LINE L1 5689 6141 -13 2893 249 42 11 chr12 30814696 30815747 -112970708 + L1M4 LINE L1 2277 3360 -2786 5177 223 16 22 chr12 30815749 30817415 -112969040 - L1PA15 LINE L1 -3999 2798 1123 1322 259 84 50 chr12 30817433 30817655 -112968800 - L1MEc LINE L1 -3198 3017 2804 1869 105 72 56 chr12 30817655 30817960 -112968495 - AluSg SINE Alu 0 310 1 1322 259 84 50 chr12 30817960 30818474 -112967981 - L1MEc LINE L1 -3411 2804 2256 621 260 33 70 chr12 30818488 30818758 -112967697 - L1MEc LINE L1 -4192 2204 1958 2133 98 28 0 chr12 30818758 30819043 -112967412 - AluSc SINE Alu -7 302 10 621 260 33 70 chr12 30819043 30819256 -112967199 - L1MEc LINE L1 -4438 1958 1739 1442 176 17 0 chr12 30819274 30819513 -112966942 + MER2 DNA MER2_type 1 243 -102 929 195 90 0 chr12 30819516 30819716 -112966739 - LTR9B LTR ERV1 0 644 427 2002 114 0 24 chr12 30871237 30871458 -112914997 - AluSx SINE Alu 0 352 140 1769 134 7 20 chr12 30871458 30871757 -112914698 - AluY SINE Alu -14 297 3 2002 114 0 24 chr12 30871757 30871893 -112914562 - AluSx SINE Alu -212 140 2 647 169 7 84 chr12 30871894 30872036 -112914419 - MER57-int LTR ERV1 -1582 5955 5825 6084 180 35 43 chr12 30872283 30873700 -112912755 - MER57-int LTR ERV1 -1327 3553 2151 182 299 104 13 chr12 30873707 30873784 -112912671 - L2 LINE L2 -23 3249 3166 1856 179 75 16 chr12 30875111 30875540 -112910915 - Charlie1 DNA MER1_type 0 2761 2308 453 208 67 8 chr12 30875536 30875656 -112910799 - Charlie1 DNA MER1_type -2591 170 44 * 2563 204 102 33 chr12 30876532 30877207 -112909248 + MER72 LTR ERV1 1 722 0 285 328 74 33 chr12 30877220 30877397 -112909058 + L2 LINE L2 2901 3060 -212 188 325 73 31 chr12 30878095 30878286 -112908169 + L2 LINE L2 1902 2100 -1214 260 345 90 0 chr12 30878355 30878500 -112907955 + MIR3 SINE MIR 36 193 -15 519 298 60 52 chr12 30878654 30879037 -112907418 + L1ME4a LINE L1 5528 5913 -208 739 323 75 52 chr12 30879727 30880310 -112906145 + L3 LINE CR1 263 859 -718 761 303 64 49 chr12 30881166 30881575 -112904880 - L2 LINE L2 -76 3237 2823 338 309 33 66 chr12 30883698 30883879 -112902576 - MIR SINE MIR -12 250 76 478 226 157 19 chr12 30883954 30884113 -112902342 + MER5A DNA MER1_type 9 189 0 632 216 68 14 chr12 30885910 30886058 -112900397 + MIR SINE MIR 57 212 -50 1129 78 0 0 chr12 30886326 30886468 -112899987 - HERV9 LTR ERV1 -6416 1983 1842 16093 100 15 8 chr12 30886644 30889106 -112897349 - HERV9 LTR ERV1 -1935 503 2 366 204 31 20 chr12 30889109 30889207 -112897248 - LTR30 LTR ERV1 -80 642 544 4963 125 66 74 chr12 30889207 30890328 -112896127 - pTR5 LTR ERV1 -413 2025 741 1762 142 45 7 chr12 30890535 30890697 -112895758 - AluSx SINE Alu -10 302 123 423 0 0 0 chr12 30890697 30890744 -112895711 + (TG)n Simple_repeat Simple_repeat 2 48 0 1762 142 45 7 chr12 30890744 30890870 -112895585 - AluSx SINE Alu -189 123 3 1961 129 10 20 chr12 30891202 30891497 -112894958 - AluSx SINE Alu -20 292 1 388 289 70 7 chr12 30891517 30891659 -112894796 + Tigger8 DNA MER2_type 83 233 -433 277 282 26 122 chr12 30891713 30891869 -112894586 - L2 LINE L2 -3 3310 3170 22 0 0 0 chr12 30892578 30892600 -112893855 + AT_rich Low_complexity Low_complexity 1 22 0 14348 157 63 34 chr12 30892804 30896436 -112890019 - MER109 Unknown Unknown 0 2432 578 2369 86 0 0 chr12 30896436 30896726 -112889729 + AluSc SINE Alu 1 290 -19 14348 157 63 34 chr12 30896726 30897321 -112889134 - MER109 Unknown Unknown -1854 578 1 305 241 69 9 chr12 30897425 30897541 -112888914 - MER109 Unknown Unknown -1831 601 479 383 228 70 0 chr12 30899006 30899120 -112887335 + MLT1F1 LTR MaLR 156 277 -290 522 298 68 10 chr12 30899122 30899414 -112887041 - HAL1 LINE L1 -971 1536 1228 2290 111 0 7 chr12 30899567 30899873 -112886582 + AluSq SINE Alu 1 304 -9 448 270 55 59 chr12 30900015 30900252 -112886203 + MLT1J LTR MaLR 226 461 -50 468 311 128 5 chr12 30900513 30900709 -112885746 + MIR SINE MIR 2 221 -41 388 233 130 13 chr12 30901036 30901302 -112885153 - L1MB8 LINE L1 -5 6161 5841 2142 102 3 20 chr12 30901311 30901616 -112884839 - AluSx SINE Alu -10 302 3 829 289 45 4 chr12 30901743 30901985 -112884470 - MIR SINE MIR -1 261 10 312 277 181 46 chr12 30902546 30902784 -112883671 - L1ME3 LINE L1 -211 5951 5682 280 180 0 49 chr12 30902824 30902885 -112883570 + MER5B DNA MER1_type 8 65 -113 382 284 31 21 chr12 30902926 30903119 -112883336 - L1ME3 LINE L1 -519 5651 5461 2430 90 0 0 chr12 30903205 30903516 -112882939 - AluY SINE Alu 0 311 1 329 274 204 22 chr12 30903613 30903883 -112882572 + Tigger8 DNA MER2_type 206 524 -142 188 200 20 40 chr12 30904234 30904284 -112882171 + L2 LINE L2 3265 3313 0 2132 94 63 0 chr12 30904409 30904696 -112881759 + AluSg SINE Alu 1 305 -5 3170 120 93 9 chr12 30904990 30905571 -112880884 + MER39B LTR ERV1 5 621 -1 286 303 12 47 chr12 30905970 30906191 -112880264 + GA-rich Low_complexity Low_complexity 1 213 0 304 319 6 35 chr12 30906242 30906411 -112880044 + GA-rich Low_complexity Low_complexity 3 166 0 277 213 40 0 chr12 30906700 30906775 -112879680 + MER116 DNA Mariner 1 78 -2 2220 119 0 3 chr12 30908261 30908572 -112877883 + AluSg SINE Alu 1 310 0 265 229 0 0 chr12 30908584 30908645 -112877810 - MER116 DNA Mariner -16 64 4 41811 39 2 4 chr12 30909833 30915995 -112870460 - L1PA3 LINE L1 -1 6154 2 1249 231 7 50 chr12 30916383 30916682 -112869773 - AluJo SINE Alu -25 287 2 21 57 0 0 chr12 30917022 30917057 -112869398 + AT_rich Low_complexity Low_complexity 1 35 0 240 35 0 0 chr12 30917184 30917213 -112869242 + (CA)n Simple_repeat Simple_repeat 2 30 0 2104 97 17 21 chr12 30917543 30917833 -112868622 - AluSx SINE Alu -8 304 16 264 258 148 62 chr12 30917903 30918159 -112868296 - L1ME LINE L1 -315 5806 5529 280 288 29 14 chr12 30918163 30918302 -112868153 + L1ME LINE L1 5574 5714 -407 24 0 0 0 chr12 30918366 30918390 -112868065 + AT_rich Low_complexity Low_complexity 1 24 0 293 261 14 0 chr12 30918932 30919001 -112867454 - MER5B DNA MER1_type -1 177 108 3929 197 85 56 chr12 30919010 30920724 -112865731 + L1MD1 LINE L1 4295 6072 -170 2046 92 7 35 chr12 30920724 30921007 -112865448 + AluSx SINE Alu 32 306 -6 3929 197 85 56 chr12 30921007 30921178 -112865277 + L1MD1 LINE L1 6072 6236 -6 360 300 58 0 chr12 30921213 30921283 -112865172 - MER5B DNA MER1_type -51 127 46 384 40 0 0 chr12 30921283 30921333 -112865122 + (TG)n Simple_repeat Simple_repeat 2 51 0 360 300 58 0 chr12 30921333 30921382 -112865073 - MER5B DNA MER1_type -132 46 1 409 284 42 0 chr12 30921648 30921743 -112864712 - MIR SINE MIR -103 159 61 1412 216 13 23 chr12 30922374 30922680 -112863775 - AluJo SINE Alu -9 303 1 2326 83 0 23 chr12 30922816 30923116 -112863339 - AluY SINE Alu -18 293 1 223 139 0 0 chr12 30923920 30923956 -112862499 - MIR SINE MIR -109 153 118 2958 3 0 0 chr12 30924021 30924339 -112862116 - AluYb8 SINE Alu 0 318 1 3541 97 24 8 chr12 30927487 30927990 -112858465 - MER9 LTR ERVK 0 511 1 609 225 80 14 chr12 30928104 30928242 -112858213 + MIR SINE MIR 6 152 -110 400 236 195 16 chr12 30928254 30928377 -112858078 + MIR SINE MIR 67 211 -51 992 333 75 30 chr12 30928403 30928868 -112857587 + L3 LINE CR1 245 730 -847 551 267 85 49 chr12 30929063 30929310 -112857145 + MIR SINE MIR 7 262 0 378 240 221 26 chr12 30929342 30929496 -112856959 - L3 LINE CR1 -296 1281 1098 240 294 130 20 chr12 30929651 30929797 -112856658 + L2 LINE L2 832 993 -2321 * 357 219 163 56 chr12 30929786 30929946 -112856509 - L2 LINE L2 -1523 1791 1615 601 303 117 9 chr12 30929967 30930317 -112856138 + L2 LINE L2 2224 2611 -703 746 145 125 0 chr12 30930320 30930472 -112855983 + MER3 DNA MER1_type 8 131 -78 293 324 62 44 chr12 30930546 30930771 -112855684 + L2 LINE L2 2717 2945 -369 430 347 83 4 chr12 30930789 30931031 -112855424 - L2 LINE L2 -33 3280 3020 1007 162 11 11 chr12 30931052 30931237 -112855218 + MLT1A1 LTR MaLR 169 353 -12 1747 242 123 2 chr12 30931514 30932027 -112854428 + MER90 LTR ERV1 1 575 0 298 227 15 0 chr12 30932496 30932562 -112853893 + tRNA-Ala-GCG tRNA tRNA 6 72 -3 373 155 0 0 chr12 30933800 30933871 -112852584 - L1PBa LINE L1 -5700 1163 1093 2441 212 68 7 chr12 30933872 30934485 -112851970 - L1PBa LINE L1 -5815 1048 398 245 224 82 94 chr12 30934594 30934682 -112851773 - L1ME4a LINE L1 -2 6119 6032 1748 164 18 11 chr12 30934682 30934968 -112851487 + AluJo SINE Alu 5 292 -20 245 224 82 94 chr12 30934968 30935049 -112851406 - L1ME4a LINE L1 -89 6032 5952 2408 268 186 24 chr12 30935580 30936587 -112849868 - L2 LINE L2 -387 2927 1758 440 261 128 28 chr12 30936609 30936689 -112849766 + L2 LINE L2 3045 3116 -197 2540 121 3 3 chr12 30936689 30937053 -112849402 + THE1B LTR MaLR 1 364 0 440 261 128 28 chr12 30937053 30937183 -112849272 + L2 LINE L2 3116 3276 -37 21 0 0 0 chr12 30937922 30937943 -112848512 + AT_rich Low_complexity Low_complexity 1 21 0 948 174 19 0 chr12 30938734 30938895 -112847560 + FAM SINE Alu 1 164 -11 2274 54 43 0 chr12 30938899 30939175 -112847280 - AluY SINE Alu -21 290 3 315 287 150 40 chr12 30939560 30939807 -112846648 - L1ME4a LINE L1 -217 5904 5631 5747 72 82 1 chr12 30940033 30940797 -112845658 - LTR12 LTR ERV1 0 826 1 353 282 104 91 chr12 30941761 30942310 -112844145 - L1ME4a LINE L1 -1293 4853 4298 980 159 50 125 chr12 30942542 30942926 -112843529 + MER34B LTR ERV1 145 499 -66 249 39 39 39 chr12 30942975 30943027 -112843428 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 2421 209 50 15 chr12 30943128 30943670 -112842785 - MER21B LTR ERV1 -125 738 178 237 258 32 32 chr12 30944553 30944615 -112841840 - MIR SINE MIR -64 144 83 7619 26 1 0 chr12 30944670 30946155 -112840300 + L1PA3 LINE L1 4668 6152 -3 22 35 0 0 chr12 30946155 30946184 -112840271 + AT_rich Low_complexity Low_complexity 1 29 0 234 311 99 31 chr12 30949010 30949171 -112837284 - MIR SINE MIR -89 173 2 624 302 46 35 chr12 30949504 30949789 -112836666 + L2 LINE L2 3021 3308 -5 541 197 82 0 chr12 30950707 30950829 -112835626 + FLAM_C SINE Alu 2 133 0 271 182 36 0 chr12 30951070 30951125 -112835330 - L2 LINE L2 -67 3246 3190 583 276 98 66 chr12 30951384 30951553 -112834902 - L2 LINE L2 -18 3295 3133 1812 154 77 3 chr12 30951553 30951864 -112834591 - MER1B DNA MER1_type -3 334 1 583 276 98 66 chr12 30951864 30952060 -112834395 - L2 LINE L2 -180 3133 2918 396 0 0 0 chr12 30952800 30952844 -112833611 + (CA)n Simple_repeat Simple_repeat 2 45 0 2092 88 33 0 chr12 30952902 30953207 -112833248 - L1PA7 LINE L1 -1510 4636 4322 6938 65 0 0 chr12 30953207 30954712 -112831743 + L1PA7 LINE L1 4661 6164 0 218 253 12 60 chr12 30956571 30956654 -112829801 - MIR SINE MIR -7 255 177 2531 261 109 26 chr12 30956814 30957770 -112828685 + L2 LINE L2 597 1631 -1683 308 363 29 23 chr12 30959620 30959791 -112826664 - MIR3 SINE MIR -32 176 5 279 299 103 34 chr12 30960214 30960331 -112826124 + L2 LINE L2 3134 3258 -14 181 355 140 0 chr12 30960819 30960912 -112825543 + L2 LINE L2 3204 3309 -4 2360 93 0 6 chr12 30960913 30961226 -112825229 - AluY SINE Alu 0 311 1 24 0 0 0 chr12 30961233 30961257 -112825198 + AT_rich Low_complexity Low_complexity 1 24 0 357 379 39 0 chr12 30961412 30961565 -112824890 - L2 LINE L2 -283 3030 2872 6703 126 23 9 chr12 30961624 30963305 -112823150 + L1MA3 LINE L1 4600 6305 0 1012 274 66 42 chr12 30963987 30964396 -112822059 + LTR16C LTR ERVL 73 491 0 227 200 0 0 chr12 30965878 30965928 -112820527 + (TA)n Simple_repeat Simple_repeat 1 50 0 393 345 83 49 chr12 30966608 30967125 -112819330 - L2 LINE L2 -11 3261 2728 * 454 303 84 0 chr12 30967107 30967262 -112819193 + MIR SINE MIR 18 185 -77 1163 223 91 22 chr12 30967497 30967815 -112818640 + MER58B DNA MER1_type 1 340 -1 900 158 54 124 chr12 30968786 30969084 -112817371 - THE1C LTR MaLR 0 375 99 3470 47 0 0 chr12 30969352 30969776 -112816679 + L1PA5 LINE L1 5724 6147 -7 21 36 0 0 chr12 30969857 30969885 -112816570 + AT_rich Low_complexity Low_complexity 1 28 0 719 184 42 30 chr12 30970055 30970223 -112816232 + L1ME3A LINE L1 5929 6098 -72 296 175 475 0 chr12 30971309 30971389 -112815066 + MER5A DNA MER1_type 69 186 -3 1639 188 86 21 chr12 30972206 30973004 -112813451 + L1MC3 LINE L1 6492 7542 -243 240 363 30 22 chr12 30973005 30973125 -112813330 - L2 LINE L2 -365 2949 2826 1519 162 48 7 chr12 30973125 30973396 -112813059 + AluJo SINE Alu 5 286 -26 240 363 30 22 chr12 30973396 30973410 -112813045 - L2 LINE L2 -488 2826 2814 361 206 82 31 chr12 30973420 30973517 -112812938 - MER5B DNA MER1_type -1 177 76 233 248 91 8 chr12 30973523 30973644 -112812811 + L1ME4a LINE L1 5821 5951 -219 6564 65 18 8 chr12 30973733 30974612 -112811843 - L1PA8 LINE L1 0 6172 5285 263 360 220 19 chr12 30974874 30975246 -112811209 + L3 LINE CR1 1092 1538 -39 580 217 14 58 chr12 30975724 30975862 -112810593 - L2 LINE L2 0 3313 3182 371 335 77 37 chr12 30976974 30977211 -112809244 + L2 LINE L2 2214 2465 -849 2932 75 75 2 chr12 30977211 30977584 -112808871 + MLT2A1 LTR ERVL 1 408 -36 384 22 0 0 chr12 30977584 30977629 -112808826 + (CA)n Simple_repeat Simple_repeat 2 46 0 2932 75 75 2 chr12 30977629 30977669 -112808786 + MLT2A1 LTR ERVL 408 444 0 371 335 77 37 chr12 30977669 30977703 -112808752 + L2 LINE L2 2465 2496 -818 654 294 65 0 chr12 30977804 30978018 -112808437 + MIR SINE MIR 30 257 -5 374 229 38 46 chr12 30978370 30978501 -112807954 - MER5A DNA MER1_type -28 161 32 593 316 109 0 chr12 30979937 30980250 -112806205 + L1MC4a LINE L1 5539 5885 -1923 504 48 0 0 chr12 30980268 30980331 -112806124 + (CA)n Simple_repeat Simple_repeat 2 64 0 222 364 84 18 chr12 30981095 30981320 -112805135 + L2 LINE L2 2866 3105 -167 366 272 59 22 chr12 30981804 30981940 -112804515 + L1ME4a LINE L1 5975 6115 -6 23 54 0 0 chr12 30982164 30982201 -112804254 + AT_rich Low_complexity Low_complexity 1 37 0 525 42 14 0 chr12 30982201 30982272 -112804183 - MER41A LTR ERV1 -83 471 400 2363 108 0 0 chr12 30983339 30983645 -112802810 - AluSg SINE Alu -4 306 1 263 220 130 10 chr12 30983982 30984082 -112802373 + MER117 DNA MER1_type 5 116 -81 304 212 45 15 chr12 30984101 30984167 -112802288 - L2 LINE L2 0 3313 3246 338 174 81 12 chr12 30984424 30984510 -112801945 + HsTC2 DNA Tc2 11 102 -1796 312 382 109 26 chr12 30984510 30984777 -112801678 - L1MEd LINE L1 -5473 646 358 1075 311 124 31 chr12 30985273 30986141 -112800314 + L2 LINE L2 2358 3303 -10 849 332 88 18 chr12 30986401 30986970 -112799485 - L3 LINE CR1 -112 1465 857 647 197 0 0 chr12 30988039 30988156 -112798299 + FLAM_A SINE Alu 8 124 -18 914 146 251 18 chr12 30988646 30988865 -112797590 + AluSg1 SINE Alu 35 304 -5 2096 92 0 37 chr12 30988876 30989017 -112797438 + AluSx SINE Alu 1 146 -210 2251 60 7 20 chr12 30989017 30989317 -112797138 + AluY SINE Alu 2 297 -14 2096 92 0 37 chr12 30989317 30989542 -112796913 + AluSx SINE Alu 146 356 0 2204 106 6 13 chr12 30991860 30992171 -112794284 + AluSx SINE Alu 1 309 -3 1538 181 47 0 chr12 30993598 30993755 -112792700 - AluJo SINE Alu -23 289 112 230 0 33 0 chr12 30993755 30993785 -112792670 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1538 181 47 0 chr12 30993785 30993903 -112792552 - AluJo SINE Alu -200 112 1 25 0 0 0 chr12 30993903 30993928 -112792527 + AT_rich Low_complexity Low_complexity 1 25 0 1631 180 60 0 chr12 30993943 30994293 -112792162 - L1MA9 LINE L1 -4 6308 5938 371 292 88 15 chr12 30995276 30995413 -112791042 + HAL1 LINE L1 1399 1545 -962 765 282 70 70 chr12 30995424 30996151 -112790304 - L2 LINE L2 -33 3280 2557 1271 255 87 58 chr12 30996180 30996718 -112789737 - L2 LINE L2 -1024 2290 1737 340 242 150 8 chr12 30996744 30996864 -112789591 - HAL1 LINE L1 -944 1563 1427 507 293 134 26 chr12 30996922 30997637 -112788818 - L1MEd LINE L1 -4873 1246 425 1618 198 166 8 chr12 30998078 30998577 -112787878 + L1MA5 LINE L1 5722 6299 -1 1680 167 34 3 chr12 31000512 31000806 -112785649 + AluJb SINE Alu 1 303 -9 423 190 13 0 chr12 31002315 31002394 -112784061 - MER3 DNA MER1_type -129 80 1 2293 94 3 10 chr12 31003189 31003498 -112782957 + AluSx SINE Alu 1 307 -5 235 308 127 59 chr12 31003730 31004156 -112782299 - L2 LINE L2 -1515 1799 1345 23 78 0 0 chr12 31004363 31004414 -112782041 + AT_rich Low_complexity Low_complexity 1 51 0 267 247 0 82 chr12 31004984 31005057 -112781398 - MIR SINE MIR -105 103 37 280 160 0 38 chr12 31006310 31006429 -112780026 + MER5B DNA MER1_type 2 177 -1 593 178 129 61 chr12 31007248 31007325 -112779130 - MER45A DNA AcHobo -1403 178 108 1935 158 0 26 chr12 31007325 31007636 -112778819 + AluJb SINE Alu 1 303 -9 593 178 129 61 chr12 31007636 31007721 -112778734 - MER45A DNA AcHobo -1473 108 5 201 258 48 0 chr12 31008096 31008158 -112778297 + GA-rich Low_complexity Low_complexity 2 66 0 23 54 0 0 chr12 31009122 31009159 -112777296 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr12 31009209 31009236 -112777219 + AT_rich Low_complexity Low_complexity 1 27 0 1882 118 0 15 chr12 31012129 31012401 -112774054 - AluSx SINE Alu -44 268 1 21 0 0 0 chr12 31012410 31012431 -112774024 + AT_rich Low_complexity Low_complexity 1 21 0 967 179 38 0 chr12 31012511 31012695 -112773760 - MER3 DNA MER1_type -16 193 3 313 253 0 0 chr12 31013176 31013255 -112773200 + MER116 DNA Mariner 1 79 -1 1740 193 14 28 chr12 31013557 31013910 -112772545 - MER7A DNA MER2_type 0 346 1 21 0 0 0 chr12 31013939 31013960 -112772495 + AT_rich Low_complexity Low_complexity 1 21 0 790 270 103 11 chr12 31014287 31014713 -112771742 + L2 LINE L2 2684 3156 -157 207 279 16 0 chr12 31014715 31014776 -112771679 + (TATG)n Simple_repeat Simple_repeat 2 63 0 412 270 70 17 chr12 31014833 31014948 -112771507 + L2 LINE L2 3180 3300 -13 219 69 0 0 chr12 31014950 31014979 -112771476 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 186 43 0 0 chr12 31015078 31015101 -112771354 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 305 313 77 34 chr12 31016018 31016251 -112770204 - L3 LINE CR1 -30 1547 1218 540 287 25 6 chr12 31016638 31016795 -112769660 + MIR SINE MIR 47 206 -56 180 176 0 0 chr12 31016847 31016881 -112769574 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 1663 171 21 7 chr12 31018260 31018541 -112767914 + AluJb SINE Alu 1 285 -27 395 310 43 104 chr12 31018906 31019367 -112767088 + L2 LINE L2 2832 3264 -8 191 235 39 20 chr12 31019490 31019541 -112766914 - MIR SINE MIR -62 200 149 544 152 22 219 chr12 31020418 31020774 -112765681 + L1MC4 LINE L1 7757 8042 0 2301 105 3 0 chr12 31021243 31021539 -112764916 - AluSx SINE Alu -15 297 1 23 0 0 0 chr12 31022378 31022401 -112764054 + AT_rich Low_complexity Low_complexity 1 23 0 229 377 9 9 chr12 31022850 31022956 -112763499 - MIR SINE MIR -116 146 41 26 0 0 0 chr12 31023844 31023870 -112762585 + AT_rich Low_complexity Low_complexity 1 26 0 2191 134 0 6 chr12 31025078 31025392 -112761063 - AluSx SINE Alu 0 312 1 297 0 0 0 chr12 31026079 31026112 -112760343 + (TG)n Simple_repeat Simple_repeat 2 34 0 877 254 86 5 chr12 31026234 31026454 -112760001 + MIR SINE MIR 3 240 -22 2090 166 28 18 chr12 31026702 31027094 -112759361 - MER57A LTR ERV1 0 403 8 728 238 55 25 chr12 31027104 31027339 -112759116 - MER57A-int LTR ERV1 -22 7515 7274 713 131 25 0 chr12 31027353 31027475 -112758980 - LTR54B LTR ERV1 -373 125 1 5530 189 26 59 chr12 31027476 31028695 -112757760 - MER57A-int LTR ERV1 -394 7143 5971 2420 99 0 10 chr12 31028695 31029009 -112757446 - AluSx SINE Alu 0 312 2 5530 189 26 59 chr12 31029009 31029152 -112757303 - MER57A-int LTR ERV1 -1566 5971 5825 5470 176 33 39 chr12 31029482 31030816 -112755639 - MER57A-int LTR ERV1 -1327 3553 3408 183 286 104 13 chr12 31030823 31030900 -112755555 - L2 LINE L2 -23 3249 3166 1645 184 75 16 chr12 31032227 31032656 -112753799 - Charlie1 DNA MER1_type 0 2761 2308 399 208 67 8 chr12 31032652 31032772 -112753683 - Charlie1 DNA MER1_type -2591 170 44 * 2327 200 102 33 chr12 31033651 31034326 -112752129 + MER72 LTR ERV1 1 722 0 291 340 32 19 chr12 31034339 31034496 -112751959 + L2 LINE L2 2902 3060 -212 193 345 63 21 chr12 31035214 31035405 -112751050 + L2 LINE L2 1902 2100 -1214 269 345 90 0 chr12 31035474 31035619 -112750836 + MIR3 SINE MIR 36 193 -15 392 302 62 46 chr12 31035773 31036144 -112750311 + L1ME4a LINE L1 5528 5904 -217 772 344 65 38 chr12 31036843 31037424 -112749031 + L3 LINE CR1 263 859 -718 764 315 59 44 chr12 31038280 31038689 -112747766 - L2 LINE L2 -76 3237 2823 359 326 17 50 chr12 31040807 31040988 -112745467 - MIR SINE MIR -12 250 76 480 226 157 19 chr12 31041063 31041222 -112745233 + MER5A DNA MER1_type 9 189 0 221 285 146 15 chr12 31043307 31043437 -112743018 - MIR3 SINE MIR -54 154 8 261 309 40 96 chr12 31043788 31044037 -112742418 - MIR SINE MIR -14 248 14 206 314 29 29 chr12 31044088 31044193 -112742262 + L2 LINE L2 3188 3292 -21 2251 86 3 19 chr12 31044233 31044546 -112741909 + AluYa5 SINE Alu 1 308 -3 437 319 0 0 chr12 31044827 31044940 -112741515 + MIR SINE MIR 11 123 -139 2396 87 0 3 chr12 31045181 31045481 -112740974 - AluSc SINE Alu -10 299 1 237 279 147 23 chr12 31046045 31046174 -112740281 - MER5A DNA MER1_type -6 183 39 2418 81 7 0 chr12 31047487 31047783 -112738672 + AluSq SINE Alu 2 299 -14 401 303 77 39 chr12 31048374 31048597 -112737858 + MIR SINE MIR 33 252 -10 1982 129 26 0 chr12 31048882 31049154 -112737301 + AluSx SINE Alu 1 279 -33 423 0 0 0 chr12 31049154 31049201 -112737254 + (CA)n Simple_repeat Simple_repeat 1 47 0 431 339 36 27 chr12 31049361 31049589 -112736866 - MIR SINE MIR 0 262 31 1063 92 0 52 chr12 31050284 31050437 -112736018 + FAM SINE Alu 25 169 -16 438 226 101 43 chr12 31051723 31051883 -112734572 + L1ME2 LINE L1 5413 5585 -579 2653 107 0 6 chr12 31051883 31052249 -112734206 + THE1B LTR MaLR 1 364 0 438 226 101 43 chr12 31052249 31052278 -112734177 + L1ME2 LINE L1 5585 5611 -553 343 144 66 0 chr12 31052291 31052458 -112733997 + (TA)n Simple_repeat Simple_repeat 1 178 0 36 53 0 0 chr12 31052458 31052515 -112733940 + AT_rich Low_complexity Low_complexity 1 57 0 208 91 76 0 chr12 31052515 31052581 -112733874 + (TA)n Simple_repeat Simple_repeat 2 72 0 1482 227 75 18 chr12 31052581 31053075 -112733380 + L1ME2 LINE L1 5643 6164 0 434 189 30 113 chr12 31053484 31053702 -112732753 + MER106B DNA MER1_type 29 236 0 522 99 0 0 chr12 31054405 31054486 -112731969 + Alu SINE Alu 231 311 0 189 107 0 0 chr12 31055298 31055326 -112731129 + (T)n Simple_repeat Simple_repeat 1 28 0 879 162 77 121 chr12 31055679 31056018 -112730437 + MER33 DNA MER1_type 1 324 0 437 337 43 0 chr12 31056059 31056222 -112730233 + MIR SINE MIR 2 171 -91 387 236 127 44 chr12 31056686 31056860 -112729595 + MIR SINE MIR 9 191 -62 1330 203 100 8 chr12 31058109 31058370 -112728085 + AluJb SINE Alu 1 285 -27 1171 152 5 11 chr12 31058657 31058841 -112727614 - AluSg/x SINE Alu -9 301 119 5191 36 2 0 chr12 31058851 31059467 -112726988 - L1PA7 LINE L1 -3 6151 5535 370 209 152 0 chr12 31060013 31060118 -112726337 - MER103 DNA DNA -44 122 2 21 36 0 0 chr12 31060718 31060746 -112725709 + AT_rich Low_complexity Low_complexity 1 28 0 252 56 0 0 chr12 31060964 31060991 -112725464 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 -6 2191 96 4 0 chr12 31060991 31061272 -112725183 - AluSq SINE Alu -31 282 1 252 56 0 0 chr12 31061272 31061280 -112725175 + (CAAAAA)n Simple_repeat Simple_repeat 31 38 0 24 67 0 0 chr12 31063875 31063920 -112722535 + AT_rich Low_complexity Low_complexity 1 45 0 925 135 8 0 chr12 31063999 31064132 -112722323 + AluJo SINE Alu 1 134 -178 266 321 46 9 chr12 31064481 31064590 -112721865 - MIR SINE MIR -50 212 100 560 173 19 19 chr12 31064620 31064724 -112721731 + FRAM SINE Alu 60 163 -13 431 241 14 0 chr12 31067054 31067176 -112719279 + MER20B DNA MER1_type 93 219 0 254 302 103 0 chr12 31067255 31067381 -112719074 - L2 LINE L2 -9 3304 3166 778 292 133 61 chr12 31067658 31068514 -112717941 - L2 LINE L2 -903 2411 1494 2264 159 22 26 chr12 31068518 31068934 -112717521 - MLT2D LTR ERVL 0 414 1 2109 136 0 0 chr12 31069087 31069389 -112717066 + AluSq SINE Alu 1 302 -11 772 249 95 119 chr12 31069422 31069990 -112716465 - L2 LINE L2 -5 3308 2699 404 148 0 0 chr12 31069990 31070051 -112716404 - AluS SINE Alu -223 90 30 772 249 95 119 chr12 31070051 31070216 -112716239 - L2 LINE L2 -614 2699 2532 324 208 56 96 chr12 31070220 31070345 -112716110 - MIR SINE MIR -11 251 132 693 263 84 20 chr12 31070410 31070783 -112715672 + LTR16A LTR ERVL 29 445 -12 21 0 0 0 chr12 31072738 31072759 -112713696 + AT_rich Low_complexity Low_complexity 1 21 0 413 207 83 16 chr12 31073772 31073893 -112712562 - L1ME4a LINE L1 -4 6117 5989 2087 124 0 7 chr12 31074084 31074401 -112712054 + AluSx SINE Alu 1 315 0 312 27 0 0 chr12 31075094 31075131 -112711324 + (CA)n Simple_repeat Simple_repeat 2 38 0 408 335 113 52 chr12 31076934 31077316 -112709139 - L2 LINE L2 -18 3254 2850 189 226 0 0 chr12 31077495 31077548 -112708907 + G-rich Low_complexity Low_complexity 4 56 0 187 191 16 111 chr12 31077913 31077976 -112708479 - MIR SINE MIR -121 141 85 1258 193 8 103 chr12 31077989 31078388 -112708067 - MLT1A2 LTR MaLR -13 361 1 380 298 0 0 chr12 31078605 31078689 -112707766 - MIR SINE MIR -157 105 22 27 0 0 0 chr12 31079330 31079357 -112707098 + AT_rich Low_complexity Low_complexity 1 27 0 635 275 87 29 chr12 31079420 31079771 -112706684 - MER57A LTR ERV1 -6 397 43 1863 86 92 67 chr12 31079795 31080195 -112706260 + LTR14B LTR ERVK 6 608 0 343 167 40 79 chr12 31080602 31080728 -112705727 - L1MB5 LINE L1 -1 6173 6053 23 0 0 0 chr12 31081466 31081489 -112704966 + AT_rich Low_complexity Low_complexity 1 23 0 1369 142 4 16 chr12 31081715 31081969 -112704486 - Tigger4(Zombi) DNA MER2_type 0 2731 2481 851 137 7 34 chr12 31081970 31082116 -112704339 + FLAM_C SINE Alu 1 142 -1 4383 126 3 3 chr12 31082116 31082815 -112703640 - Tigger4(Zombi) DNA MER2_type -244 2487 1789 * 7929 131 32 66 chr12 31082813 31084336 -112702119 - Tigger4(Zombi) DNA MER2_type -1259 1472 1 658 91 27 0 chr12 31084801 31084911 -112701544 + L1MCa LINE L1 663 775 -5651 2963 130 26 2 chr12 31084921 31085450 -112701005 + L1MCa LINE L1 857 1398 -5028 1198 213 49 55 chr12 31085453 31085616 -112700839 - MER50 LTR ERV1 0 734 572 2508 71 0 0 chr12 31085616 31085926 -112700529 + AluY SINE Alu 1 310 -1 1198 213 49 55 chr12 31085926 31086109 -112700346 - MER50 LTR ERV1 -162 572 390 187 231 58 19 chr12 31086417 31086469 -112699986 - MIR SINE MIR -70 192 139 231 286 0 14 chr12 31087428 31087498 -112698957 + MIR3 SINE MIR 137 205 -3 367 376 25 6 chr12 31087640 31087802 -112698653 - MIR SINE MIR -78 184 20 558 143 76 0 chr12 31088084 31088203 -112698252 - L1P LINE L1 -877 5269 5142 3800 142 70 21 chr12 31088203 31088808 -112697647 + L1PA16 LINE L1 5391 6039 -127 2299 115 126 5 chr12 31088808 31089190 -112697265 - MSTA LTR MaLR 0 428 1 3800 142 70 21 chr12 31089190 31089325 -112697130 + L1PA16 LINE L1 6039 6166 0 837 298 81 30 chr12 31089922 31090291 -112696164 - L2 LINE L2 0 3313 2926 1279 230 12 33 chr12 31090483 31090814 -112695641 - MLT2D LTR ERVL 0 414 91 1792 177 11 34 chr12 31092106 31092320 -112694135 + MER7A DNA MER2_type 1 218 -2820 2443 106 43 3 chr12 31092320 31092668 -112693787 - THE1B LTR MaLR -2 362 1 9405 131 63 10 chr12 31092668 31094169 -112692286 - THE1B-int LTR MaLR 0 1580 1 2471 132 3 3 chr12 31094169 31094533 -112691922 - THE1B LTR MaLR 0 364 1 1792 177 11 34 chr12 31094533 31094672 -112691783 + MER7A DNA MER2_type 215 346 0 189 0 0 0 chr12 31095047 31095068 -112691387 + (A)n Simple_repeat Simple_repeat 1 21 0 1658 176 36 15 chr12 31095661 31095990 -112690465 + MLT2C1 LTR ERVL 1 336 -61 324 0 0 0 chr12 31095990 31096026 -112690429 + (TC)n Simple_repeat Simple_repeat 1 36 0 252 0 0 0 chr12 31096025 31096053 -112690402 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 27 29 0 0 chr12 31097082 31097116 -112689339 + AT_rich Low_complexity Low_complexity 1 34 0 630 328 92 10 chr12 31097185 31097478 -112688977 - L3b LINE CR1 -87 1496 1180 601 196 18 0 chr12 31097492 31097604 -112688851 - FLAM_C SINE Alu -22 121 8 2268 69 0 0 chr12 31098473 31098762 -112687693 - L1PA7 LINE L1 -15 6139 5851 357 62 0 0 chr12 31098964 31099012 -112687443 + (TG)n Simple_repeat Simple_repeat 2 49 0 198 103 0 0 chr12 31099419 31099448 -112687007 + (T)n Simple_repeat Simple_repeat 1 29 0 743 190 36 41 chr12 31100064 31100259 -112686196 + L1ME LINE L1 5392 5585 -579 2443 278 172 25 chr12 31100259 31101476 -112684979 - L2 LINE L2 -711 2603 1209 480 133 0 0 chr12 31102842 31102925 -112683530 + (TGGA)n Simple_repeat Simple_repeat 3 85 0 461 240 47 0 chr12 31103953 31104103 -112682352 + L1M4 LINE L1 4464 4620 -1526 577 211 56 0 chr12 31104259 31104401 -112682054 - MLT1B LTR MaLR 0 390 241 304 39 20 20 chr12 31104404 31104455 -112682000 + (TTTTA)n Simple_repeat Simple_repeat 4 54 0 26048 33 7 4 chr12 31104455 31108576 -112677879 - L1PA3 LINE L1 -16 6139 2006 853 270 194 8 chr12 31108665 31109100 -112677355 + L2 LINE L2 2801 3311 -2 2131 141 0 6 chr12 31109836 31110148 -112676307 - AluSx SINE Alu -2 310 1 692 281 12 6 chr12 31110558 31110725 -112675730 + MER5A DNA MER1_type 1 168 -21 1003 294 10 17 chr12 31110815 31111107 -112675348 - L2 LINE L2 -5 3308 3019 1305 193 130 25 chr12 31111631 31111984 -112674471 + MLT1B LTR MaLR 1 390 0 27 0 0 0 chr12 31112359 31112386 -112674069 + AT_rich Low_complexity Low_complexity 1 27 0 218 279 0 0 chr12 31112557 31112600 -112673855 - L2 LINE L2 -256 3057 3015 844 272 155 42 chr12 31112903 31113502 -112672953 + L2 LINE L2 1745 2411 -903 254 302 103 0 chr12 31113779 31113905 -112672550 + L2 LINE L2 3166 3304 -9 417 252 14 0 chr12 31113984 31114106 -112672349 - MER20B DNA MER1_type 0 219 93 560 173 19 19 chr12 31116436 31116540 -112669915 - FRAM SINE Alu -13 163 60 266 321 46 9 chr12 31116570 31116679 -112669776 + MIR SINE MIR 100 212 -50 925 135 8 0 chr12 31117028 31117161 -112669294 - AluJo SINE Alu -178 134 1 24 67 0 0 chr12 31117240 31117285 -112669170 + AT_rich Low_complexity Low_complexity 1 45 0 252 56 0 0 chr12 31119880 31119888 -112666567 + (TTTTTG)n Simple_repeat Simple_repeat 3 10 -28 2191 96 4 0 chr12 31119888 31120169 -112666286 + AluSq SINE Alu 1 282 -31 252 56 0 0 chr12 31120169 31120196 -112666259 + (TTTTTG)n Simple_repeat Simple_repeat 9 38 0 21 36 0 0 chr12 31120414 31120442 -112666013 + AT_rich Low_complexity Low_complexity 1 28 0 370 209 152 0 chr12 31121042 31121147 -112665308 + MER103 DNA DNA 2 122 -44 5191 36 2 0 chr12 31121693 31122309 -112664146 + L1PA7 LINE L1 5535 6151 -3 1171 152 5 11 chr12 31122319 31122503 -112663952 + AluSg/x SINE Alu 121 303 -9 1330 203 100 8 chr12 31122790 31123051 -112663404 - AluJb SINE Alu -27 285 1 387 236 127 44 chr12 31124300 31124474 -112661981 - MIR SINE MIR -62 146 9 437 337 43 0 chr12 31124938 31125101 -112661354 - MIR SINE MIR -91 171 2 879 162 77 121 chr12 31125142 31125481 -112660974 - MER33 DNA MER1_type 0 324 1 189 107 0 0 chr12 31125834 31125862 -112660593 + (A)n Simple_repeat Simple_repeat 1 28 0 522 99 0 0 chr12 31126674 31126755 -112659700 - Alu SINE Alu 0 310 230 434 189 30 113 chr12 31127458 31127676 -112658779 - MER106B DNA MER1_type 0 236 29 1482 227 75 18 chr12 31128085 31128579 -112657876 - L1ME2 LINE L1 0 6164 5643 302 158 70 7 chr12 31128579 31128871 -112657584 + (TA)n Simple_repeat Simple_repeat 1 310 0 438 226 101 43 chr12 31128884 31128913 -112657542 - L1ME2 LINE L1 -553 5611 5585 2653 107 0 6 chr12 31128913 31129279 -112657176 - THE1B LTR MaLR 0 364 1 438 226 101 43 chr12 31129279 31129439 -112657016 - L1ME2 LINE L1 -579 5585 5413 1063 92 0 52 chr12 31130725 31130878 -112655577 - FAM SINE Alu -16 169 25 431 339 36 27 chr12 31131573 31131801 -112654654 + MIR SINE MIR 31 262 0 423 0 0 0 chr12 31131961 31132008 -112654447 + (TG)n Simple_repeat Simple_repeat 1 47 0 1982 129 26 0 chr12 31132008 31132280 -112654175 - AluSx SINE Alu -33 279 1 401 303 77 39 chr12 31132565 31132788 -112653667 - MIR SINE MIR -10 252 33 2418 81 7 0 chr12 31133379 31133675 -112652780 - AluSq SINE Alu -14 299 2 237 279 147 23 chr12 31134988 31135117 -112651338 + MER5A DNA MER1_type 39 183 -6 2396 87 0 3 chr12 31135681 31135981 -112650474 + AluSc SINE Alu 1 299 -10 437 319 0 0 chr12 31136222 31136335 -112650120 - MIR SINE MIR -139 123 11 2251 86 3 19 chr12 31136616 31136929 -112649526 - AluYa5 SINE Alu -3 308 1 206 314 29 29 chr12 31136969 31137074 -112649381 - L2 LINE L2 -21 3292 3188 261 309 40 96 chr12 31137125 31137374 -112649081 + MIR SINE MIR 14 248 -14 221 285 146 15 chr12 31137725 31137855 -112648600 + MIR3 SINE MIR 8 154 -54 480 226 157 19 chr12 31139940 31140099 -112646356 - MER5A DNA MER1_type 0 189 9 359 326 17 50 chr12 31140174 31140355 -112646100 + MIR SINE MIR 76 250 -12 764 315 59 44 chr12 31142473 31142882 -112643573 + L2 LINE L2 2823 3237 -76 772 344 65 38 chr12 31143738 31144319 -112642136 - L3 LINE CR1 -718 859 263 392 302 62 46 chr12 31145018 31145389 -112641066 - L1ME4a LINE L1 -217 5904 5528 269 345 90 0 chr12 31145543 31145688 -112640767 - MIR3 SINE MIR -15 193 36 193 345 63 21 chr12 31145757 31145948 -112640507 - L2 LINE L2 -1214 2100 1902 291 340 32 19 chr12 31146666 31146823 -112639632 - L2 LINE L2 -212 3060 2902 2327 200 102 33 chr12 31146836 31147511 -112638944 - MER72 LTR ERV1 0 722 1 399 208 67 8 chr12 31148390 31148510 -112637945 + Charlie1 DNA MER1_type 44 170 -2591 * 1645 184 75 16 chr12 31148506 31148935 -112637520 + Charlie1 DNA MER1_type 2308 2761 0 183 286 104 13 chr12 31150262 31150339 -112636116 + L2 LINE L2 3166 3249 -23 5470 176 33 39 chr12 31150346 31151680 -112634775 + MER57A-int LTR ERV1 3408 5821 -1327 5530 189 26 59 chr12 31152010 31152153 -112634302 + MER57A-int LTR ERV1 5825 5971 -1566 2420 99 0 10 chr12 31152153 31152467 -112633988 + AluSx SINE Alu 2 312 0 5530 189 26 59 chr12 31152467 31153686 -112632769 + MER57A-int LTR ERV1 5971 7143 -394 713 131 25 0 chr12 31153687 31153809 -112632646 + LTR54B LTR ERV1 1 125 -373 728 238 55 25 chr12 31153823 31154058 -112632397 + MER57A-int LTR ERV1 7274 7515 -22 2090 166 28 18 chr12 31154068 31154460 -112631995 + MER57A LTR ERV1 8 403 0 877 254 86 5 chr12 31154708 31154928 -112631527 - MIR SINE MIR -22 240 3 297 0 0 0 chr12 31155050 31155083 -112631372 + (CA)n Simple_repeat Simple_repeat 2 34 0 2191 134 0 6 chr12 31155770 31156084 -112630371 + AluSx SINE Alu 1 312 0 26 0 0 0 chr12 31157292 31157318 -112629137 + AT_rich Low_complexity Low_complexity 1 26 0 229 377 9 9 chr12 31158206 31158312 -112628143 + MIR SINE MIR 41 146 -116 23 0 0 0 chr12 31158761 31158784 -112627671 + AT_rich Low_complexity Low_complexity 1 23 0 2301 105 3 0 chr12 31159623 31159919 -112626536 + AluSx SINE Alu 1 297 -15 544 152 22 219 chr12 31160388 31160744 -112625711 - L1MC4 LINE L1 0 8042 7757 191 235 39 20 chr12 31161621 31161672 -112624783 + MIR SINE MIR 149 200 -62 401 311 43 102 chr12 31161795 31162255 -112624200 - L2 LINE L2 -8 3264 2832 1663 171 21 7 chr12 31162620 31162901 -112623554 - AluJb SINE Alu -27 285 1 180 176 0 0 chr12 31164280 31164314 -112622141 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 540 287 25 6 chr12 31164366 31164523 -112621932 - MIR SINE MIR -56 206 47 305 313 77 34 chr12 31164910 31165143 -112621312 + L3 LINE CR1 1218 1547 -30 186 43 0 0 chr12 31166060 31166083 -112620372 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 219 69 0 0 chr12 31166182 31166211 -112620244 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 412 270 70 17 chr12 31166213 31166328 -112620127 - L2 LINE L2 -13 3300 3180 207 279 16 0 chr12 31166385 31166446 -112620009 + (CATA)n Simple_repeat Simple_repeat 2 63 0 790 270 103 11 chr12 31166448 31166874 -112619581 - L2 LINE L2 -157 3156 2684 21 0 0 0 chr12 31167201 31167222 -112619233 + AT_rich Low_complexity Low_complexity 1 21 0 1740 193 14 28 chr12 31167251 31167604 -112618851 + MER7A DNA MER2_type 1 346 0 313 253 0 0 chr12 31167906 31167985 -112618470 - MER116 DNA Mariner -1 79 1 967 179 38 0 chr12 31168466 31168650 -112617805 + MER3 DNA MER1_type 3 193 -16 21 0 0 0 chr12 31168730 31168751 -112617704 + AT_rich Low_complexity Low_complexity 1 21 0 1882 118 0 15 chr12 31168760 31169032 -112617423 + AluSx SINE Alu 1 268 -44 431 241 14 0 chr12 31172464 31172586 -112613869 + MER20B DNA MER1_type 93 219 0 254 302 103 0 chr12 31172665 31172791 -112613664 - L2 LINE L2 -9 3304 3166 778 292 133 61 chr12 31173068 31173924 -112612531 - L2 LINE L2 -903 2411 1494 2264 159 22 26 chr12 31173928 31174344 -112612111 - MLT2D LTR ERVL 0 414 1 2109 136 0 0 chr12 31174497 31174799 -112611656 + AluSq SINE Alu 1 302 -11 772 249 95 119 chr12 31174832 31175400 -112611055 - L2 LINE L2 -5 3308 2699 404 148 0 0 chr12 31175400 31175461 -112610994 - AluS SINE Alu -223 90 30 772 249 95 119 chr12 31175461 31175626 -112610829 - L2 LINE L2 -614 2699 2532 324 208 56 96 chr12 31175630 31175755 -112610700 - MIR SINE MIR -11 251 132 693 263 84 20 chr12 31175820 31176193 -112610262 + LTR16A LTR ERVL 29 445 -12 21 0 0 0 chr12 31178148 31178169 -112608286 + AT_rich Low_complexity Low_complexity 1 21 0 413 207 83 16 chr12 31179182 31179303 -112607152 - L1ME4a LINE L1 -4 6117 5989 2087 124 0 7 chr12 31179494 31179811 -112606644 + AluSx SINE Alu 1 315 0 312 27 0 0 chr12 31180504 31180541 -112605914 + (CA)n Simple_repeat Simple_repeat 2 38 0 408 335 113 52 chr12 31182344 31182726 -112603729 - L2 LINE L2 -18 3254 2850 189 226 0 0 chr12 31182905 31182958 -112603497 + G-rich Low_complexity Low_complexity 4 56 0 187 191 16 111 chr12 31183323 31183386 -112603069 - MIR SINE MIR -121 141 85 1258 193 8 103 chr12 31183399 31183798 -112602657 - MLT1A2 LTR MaLR -13 361 1 380 298 0 0 chr12 31184015 31184099 -112602356 - MIR SINE MIR -157 105 22 2602 148 7 15 chr12 31184629 31185287 -112601168 - L1MA9 LINE L1 -608 5704 5050 2416 187 25 25 chr12 31185283 31185849 -112600606 + L1MA9 LINE L1 5710 6275 -37 * 180 347 0 74 chr12 31186470 31186565 -112599890 - MIR3 SINE MIR -12 196 109 584 291 18 44 chr12 31187844 31188071 -112598384 - MIR SINE MIR -13 249 29 521 268 14 0 chr12 31188201 31188339 -112598116 + MER58B DNA MER1_type 202 341 0 1480 179 88 7 chr12 31188991 31189287 -112597168 + AluJb SINE Alu 1 312 0 702 301 50 0 chr12 31189887 31190106 -112596349 - MIR SINE MIR -21 241 12 236 204 0 0 chr12 31193325 31193374 -112593081 + T-rich Low_complexity Low_complexity 1 49 0 17729 28 4 1 chr12 31193377 31196257 -112590198 - L1PA4 LINE L1 -3 6152 3263 1819 151 10 3 chr12 31196257 31196548 -112589907 - AluJo SINE Alu -3 309 17 204 333 69 0 chr12 31196710 31196797 -112589658 - L2 LINE L2 -32 3240 3148 605 291 141 27 chr12 31197430 31197729 -112588726 - L2 LINE L2 -1 3312 2980 261 273 11 57 chr12 31197846 31197860 -112588595 - MIR SINE MIR -157 105 92 3181 102 0 7 chr12 31197860 31198321 -112588134 + MER4C LTR ERV1 5 462 -3 261 273 11 57 chr12 31198321 31198394 -112588061 - MIR SINE MIR -170 92 22 188 244 0 0 chr12 31198677 31198722 -112587733 - MIR SINE MIR -14 248 204 26 30 0 0 chr12 31198773 31198806 -112587649 + AT_rich Low_complexity Low_complexity 1 33 0 371 259 6 28 chr12 31198808 31198919 -112587536 - MIR SINE MIR -61 147 40 751 228 43 0 chr12 31198945 31199107 -112587348 - MER58A DNA MER1_type -40 184 16 2541 96 25 30 chr12 31199119 31199437 -112587018 + LTR56 LTR ERV1 9 327 -118 2137 114 0 0 chr12 31199437 31199759 -112586696 + AluSg SINE Alu 1 322 0 2541 96 25 30 chr12 31199759 31199878 -112586577 + LTR56 LTR ERV1 327 445 0 234 0 0 0 chr12 31200841 31200867 -112585588 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 283 341 81 16 chr12 31201559 31201682 -112584773 + MIR SINE MIR 19 149 -59 221 220 0 0 chr12 31202164 31202214 -112584241 + MIR SINE MIR 157 206 -56 2218 116 0 0 chr12 31204945 31205239 -112581216 - AluSx SINE Alu -18 294 1 862 174 0 0 chr12 31206125 31206307 -112580148 - FLAM_C SINE Alu 0 182 1 202 170 38 38 chr12 31206632 31206685 -112579770 - MIR3 SINE MIR 0 208 156 1582 165 55 44 chr12 31207372 31207860 -112578595 - L1M4 LINE L1 -1542 4604 4153 201 147 0 0 chr12 31208814 31208848 -112577607 + (TA)n Simple_repeat Simple_repeat 2 35 0 383 331 0 15 chr12 31208852 31208982 -112577473 + L1MC4 LINE L1 6614 6741 -1301 452 333 59 0 chr12 31210530 31210716 -112575739 + MIR SINE MIR 2 198 -64 2324 71 10 0 chr12 31210771 31211065 -112575390 - AluY SINE Alu -13 298 2 1734 160 28 7 chr12 31211081 31211369 -112575086 - AluJb SINE Alu -18 294 1 378 278 191 12 chr12 31211380 31211542 -112574913 - MIR SINE MIR -71 191 1 180 324 93 19 chr12 31211719 31211827 -112574628 + L2 LINE L2 3198 3313 0 321 288 17 21 chr12 31212378 31212484 -112573971 - MIR SINE MIR -63 145 37 198 71 0 0 chr12 31214504 31214532 -112571923 + (A)n Simple_repeat Simple_repeat 1 28 0 3716 161 11 2 chr12 31214645 31215279 -112571176 - L1PA16 LINE L1 -9 6157 5518 303 106 0 0 chr12 31215795 31215842 -112570613 - Alu SINE Alu -6 294 248 373 285 28 35 chr12 31216160 31216304 -112570151 + L2 LINE L2 3171 3313 0 210 305 57 48 chr12 31216343 31216448 -112570007 - L2 LINE L2 -213 3059 2954 309 248 39 46 chr12 31218931 31219084 -112567371 + LTR33 LTR ERVL 367 518 -3 548 309 94 18 chr12 31220795 31221018 -112565437 - MIR SINE MIR -3 259 20 2002 131 10 30 chr12 31221350 31221647 -112564808 - AluSx SINE Alu -21 291 1 392 248 30 15 chr12 31224945 31225078 -112561377 - MER103 DNA DNA -1 165 31 345 299 5 82 chr12 31225277 31225322 -112561133 - L3b LINE CR1 -216 1367 1320 2395 83 13 3 chr12 31225322 31225623 -112560832 + AluSq SINE Alu 1 304 -9 345 299 5 82 chr12 31225623 31225761 -112560694 - L3b LINE CR1 -263 1320 1198 282 235 0 74 chr12 31226411 31226469 -112559986 - L2 LINE L2 -36 3277 3225 297 0 0 0 chr12 31226469 31226502 -112559953 + (GA)n Simple_repeat Simple_repeat 2 34 0 282 235 0 74 chr12 31226502 31226524 -112559931 - L2 LINE L2 -88 3225 3203 1705 290 54 10 chr12 31226719 31227236 -112559219 - L2 LINE L2 -443 2871 2332 327 261 22 22 chr12 31230364 31230456 -112555999 + MER58B DNA MER1_type 242 333 -8 2169 116 0 0 chr12 31232465 31232758 -112553697 + AluSg SINE Alu 1 293 -17 306 0 0 0 chr12 31232758 31232792 -112553663 + (TTAAA)n Simple_repeat Simple_repeat 2 35 0 2159 119 17 0 chr12 31232916 31233211 -112553244 - AluSq SINE Alu -12 301 2 738 280 26 0 chr12 31233407 31233639 -112552816 + L2 LINE L2 2819 3056 -257 232 262 66 0 chr12 31233691 31233752 -112552703 + L2 LINE L2 3197 3261 -52 22 35 0 0 chr12 31235044 31235073 -112551382 + AT_rich Low_complexity Low_complexity 1 29 0 486 290 48 65 chr12 31235097 31235345 -112551110 - L2 LINE L2 -51 3262 3019 2294 184 15 36 chr12 31235470 31235751 -112550704 + L1MB5 LINE L1 4886 5171 -1013 2397 93 3 3 chr12 31235751 31236062 -112550393 + AluSq SINE Alu 1 311 -2 2294 184 15 36 chr12 31236062 31236704 -112549751 + L1MB5 LINE L1 5171 5786 -398 1586 197 105 25 chr12 31236716 31237194 -112549261 + MER34 LTR ERV1 27 542 0 1622 214 31 16 chr12 31237195 31237318 -112549137 + L1MB5 LINE L1 5786 5906 -268 3375 110 65 50 chr12 31237318 31237591 -112548864 + MER4B LTR ERV1 1 268 -342 2134 125 7 0 chr12 31237591 31237894 -112548561 - AluSx SINE Alu -7 305 1 3375 110 65 50 chr12 31237894 31237970 -112548485 + MER4B LTR ERV1 268 341 -269 2362 66 3 7 chr12 31237970 31238271 -112548184 + AluY SINE Alu 1 300 -11 3375 110 65 50 chr12 31238271 31238521 -112547934 + MER4B LTR ERV1 341 610 0 1622 214 31 16 chr12 31238521 31238780 -112547675 + L1MB5 LINE L1 5906 6174 0 1920 228 102 24 chr12 31238907 31239105 -112547350 - L1ME1 LINE L1 -5 6972 6791 2261 111 50 25 chr12 31239105 31239467 -112546988 - THE1C LTR MaLR -4 371 1 1920 228 102 24 chr12 31239467 31240518 -112545937 - L1ME1 LINE L1 -186 6791 5613 252 284 23 0 chr12 31240549 31240637 -112545818 - L1ME1 LINE L1 -5442 1417 1328 * 469 295 18 26 chr12 31240614 31240841 -112545614 - L1ME1 LINE L1 -5469 1478 1254 2204 139 13 26 chr12 31241239 31241619 -112544836 + THE1C LTR MaLR 1 375 0 213 333 20 30 chr12 31242419 31242518 -112543937 - L2 LINE L2 0 3272 3175 2549 210 83 10 chr12 31242950 31243550 -112542905 + MER67B LTR ERV1 11 654 -7 242 338 88 0 chr12 31243701 31243781 -112542674 + L3b LINE CR1 1475 1561 -22 255 54 27 0 chr12 31244408 31244445 -112542010 + L1MC5 LINE L1 7189 7226 -735 1538 201 69 70 chr12 31244534 31245205 -112541250 + L1MC5 LINE L1 7226 7895 -66 1847 80 0 0 chr12 31245477 31245702 -112540753 + AluSc SINE Alu 8 232 -77 1461 186 0 52 chr12 31245705 31246012 -112540443 + AluJo SINE Alu 11 301 -11 351 0 0 0 chr12 31246018 31246057 -112540398 + (CA)n Simple_repeat Simple_repeat 2 40 0 3736 159 38 26 chr12 31246990 31247755 -112538700 + LTR1 LTR ERV1 12 785 0 1134 254 88 5 chr12 31248391 31248801 -112537654 + L1ME3A LINE L1 5456 5899 -271 9371 172 152 7 chr12 31249225 31251550 -112534905 + L1PBa LINE L1 8 2670 -4193 3282 80 14 16 chr12 31251544 31251576 -112534879 + L1P5 LINE L1 5278 5309 -842 * 2483 62 0 0 chr12 31251576 31251868 -112534587 + AluY SINE Alu 1 292 -19 192 40 0 0 chr12 31251872 31251897 -112534558 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 3282 80 14 16 chr12 31251897 31252374 -112534081 + L1P5 LINE L1 5312 5791 -360 671 42 89 13 chr12 31252425 31252665 -112533790 + (TA)n Simple_repeat Simple_repeat 1 258 0 31 0 0 0 chr12 31252665 31252696 -112533759 + AT_rich Low_complexity Low_complexity 1 31 0 331 264 22 22 chr12 31252699 31252790 -112533665 - L1MC4 LINE L1 -1339 6703 6613 27 0 0 0 chr12 31252790 31252817 -112533638 + AT_rich Low_complexity Low_complexity 1 27 0 659 134 4 18 chr12 31252817 31253044 -112533411 + (TA)n Simple_repeat Simple_repeat 1 223 0 351 0 0 0 chr12 31253044 31253083 -112533372 + (TG)n Simple_repeat Simple_repeat 2 40 0 2320 134 0 8 chr12 31253084 31253457 -112532998 + L1PB1 LINE L1 5782 6151 0 401 324 97 40 chr12 31253780 31254027 -112532428 + L2 LINE L2 2958 3218 -54 190 268 120 84 chr12 31254831 31254973 -112531482 - MIR SINE MIR -84 178 32 204 352 97 34 chr12 31255742 31255918 -112530537 + MER5A DNA MER1_type 1 187 -2 2081 135 10 0 chr12 31255964 31256252 -112530203 - AluSx SINE Alu -21 291 1 287 315 11 22 chr12 31257130 31257219 -112529236 + MER5A DNA MER1_type 98 185 -4 222 37 0 0 chr12 31257330 31257357 -112529098 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1250 197 35 3 chr12 31257605 31257915 -112528540 - MER33 DNA MER1_type 0 324 5 2289 107 10 3 chr12 31259007 31259317 -112527138 - AluSx SINE Alu 0 312 1 284 269 39 0 chr12 31259932 31260062 -112526393 + MLT1J1 LTR MaLR 21 155 -291 486 231 9 131 chr12 31260098 31260419 -112526036 + L1MC5 LINE L1 7630 7911 -50 301 386 43 25 chr12 31261526 31261689 -112524766 - L2 LINE L2 0 3272 3107 2026 139 0 0 chr12 31261713 31261987 -112524468 + AluSx SINE Alu 2 275 -37 41 21 0 0 chr12 31262001 31262049 -112524406 + AT_rich Low_complexity Low_complexity 1 48 0 341 341 20 29 chr12 31262158 31262404 -112524051 - L2 LINE L2 -646 2668 2425 3247 195 11 35 chr12 31262959 31263813 -112522642 + L1MB8 LINE L1 5072 5907 -271 2249 97 10 0 chr12 31263813 31264113 -112522342 - AluSc SINE Alu -6 303 1 3247 195 11 35 chr12 31264113 31264184 -112522271 + L1MB8 LINE L1 5907 5978 -200 248 239 35 42 chr12 31264226 31264368 -112522087 - LTR37B LTR ERV1 -129 339 199 228 135 0 0 chr12 31265252 31265289 -112521166 + (TA)n Simple_repeat Simple_repeat 1 37 0 1637 93 23 0 chr12 31265290 31265504 -112520951 - AluSg/x SINE Alu -10 302 84 1950 137 43 0 chr12 31266756 31267055 -112519400 + AluSx SINE Alu 1 312 0 27 0 0 0 chr12 31267245 31267272 -112519183 + AT_rich Low_complexity Low_complexity 1 27 0 2009 161 57 31 chr12 31268162 31268583 -112517872 + MSTB1 LTR MaLR 1 432 0 583 281 103 51 chr12 31268959 31269433 -112517022 + MLT1H LTR MaLR 51 549 0 198 0 0 0 chr12 31269709 31269731 -112516724 + (TA)n Simple_repeat Simple_repeat 1 22 0 699 265 0 29 chr12 31269925 31270129 -112516326 + MIR SINE MIR 17 214 -48 2010 115 3 45 chr12 31270352 31270664 -112515791 - AluSx SINE Alu -9 303 5 2345 75 0 53 chr12 31271302 31271620 -112514835 + AluSg SINE Alu 1 301 -9 2279 116 0 0 chr12 31272447 31272749 -112513706 - AluSq SINE Alu -11 302 1 2289 16 0 0 chr12 31272892 31273147 -112513308 + AluYa5 SINE Alu 55 309 -2 221 0 35 0 chr12 31273151 31273180 -112513275 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 207 254 0 18 chr12 31273478 31273533 -112512922 + (CAA)n Simple_repeat Simple_repeat 2 55 0 362 300 18 0 chr12 31273533 31273643 -112512812 - MIR SINE MIR -27 235 124 318 333 99 25 chr12 31273855 31274017 -112512438 + MIR3 SINE MIR 28 201 -7 2508 147 4 46 chr12 31274571 31275067 -112511388 + MER31A LTR ERV1 1 475 -10 2331 60 31 50 chr12 31275148 31275465 -112510990 - AluY SINE Alu 0 311 1 331 314 186 21 chr12 31276764 31276958 -112509497 - MIR SINE MIR -16 246 21 910 162 16 54 chr12 31277057 31277242 -112509213 - MSTD LTR MaLR 0 396 219 426 172 11 21 chr12 31277287 31277380 -112509075 - MSTD LTR MaLR -336 92 1 2416 101 0 0 chr12 31277387 31277693 -112508762 - AluSx SINE Alu -6 306 1 334 361 37 11 chr12 31278156 31278347 -112508108 - L2 LINE L2 -410 2904 2709 549 268 202 5 chr12 31279243 31279441 -112507014 - MIR SINE MIR -12 250 14 1810 167 0 20 chr12 31279585 31279885 -112506570 + AluJo SINE Alu 7 300 -12 2093 94 0 28 chr12 31279944 31280280 -112506175 + AluSg SINE Alu 1 328 0 835 276 44 18 chr12 31280431 31280656 -112505799 - MIR SINE MIR -10 252 22 31 58 0 0 chr12 31282519 31282571 -112503884 + AT_rich Low_complexity Low_complexity 1 52 0 2427 96 3 0 chr12 31282679 31282991 -112503464 - AluSp SINE Alu 0 313 1 315 320 163 25 chr12 31283070 31283273 -112503182 + MIR SINE MIR 14 244 -18 493 247 11 86 chr12 31283537 31283711 -112502744 + MER91A DNA MER1_type 13 173 -23 242 239 0 0 chr12 31283766 31283812 -112502643 + MER91A DNA MER1_type 145 190 0 445 243 87 0 chr12 31284305 31284408 -112502047 + MER81 DNA DNA 2 113 -1 408 71 0 0 chr12 31284508 31284564 -112501891 + (CA)n Simple_repeat Simple_repeat 2 57 0 181 238 38 62 chr12 31286134 31286214 -112500241 - L3 LINE CR1 -1193 384 307 2821 163 22 40 chr12 31286435 31286989 -112499466 + MER44D DNA MER2_type 4 602 -3 840 249 87 42 chr12 31287194 31287575 -112498880 + MLT1J1 LTR MaLR 2 399 -47 516 257 93 20 chr12 31287934 31288327 -112498128 + L1ME4a LINE L1 5695 6120 -1 208 154 39 0 chr12 31288624 31288676 -112497779 + GA-rich Low_complexity Low_complexity 1 54 0 567 291 29 34 chr12 31288865 31289358 -112497097 + L1MC5 LINE L1 6309 6799 -1015 2145 96 0 4 chr12 31289775 31290055 -112496400 + AluSx SINE Alu 28 306 -6 1504 196 46 78 chr12 31290165 31290730 -112495725 + L1MC5 LINE L1 7015 7561 -400 3360 205 51 30 chr12 31290936 31291982 -112494473 + L1MD2 LINE L1 5240 6357 -2 1793 178 3 7 chr12 31292778 31293076 -112493379 - AluSx SINE Alu -15 297 1 180 232 18 18 chr12 31293653 31293709 -112492746 + MIR SINE MIR 171 226 -36 21 0 0 0 chr12 31294861 31294882 -112491573 + AT_rich Low_complexity Low_complexity 1 21 0 208 293 171 33 chr12 31294959 31295321 -112491134 + L2 LINE L2 1827 2238 -1076 496 266 7 45 chr12 31295374 31295528 -112490927 + MER63A DNA MER1_type 51 198 -12 2166 198 129 25 chr12 31295917 31296572 -112489883 + L1MC4 LINE L1 7081 7819 -223 1387 191 87 61 chr12 31296572 31296950 -112489505 - MLT1B LTR MaLR 0 390 3 2166 198 129 25 chr12 31296950 31297013 -112489442 + L1MC4 LINE L1 7819 7874 -168 213 280 159 28 chr12 31297595 31297702 -112488753 - MIR SINE MIR -52 210 90 240 346 8 38 chr12 31297993 31298126 -112488329 + MLT1J LTR MaLR 266 394 -117 1871 141 170 32 chr12 31298183 31298559 -112487896 - MSTA LTR MaLR 0 428 1 2231 96 24 0 chr12 31298656 31298949 -112487506 - AluSx SINE Alu -12 300 1 21 0 0 0 chr12 31299444 31299465 -112486990 + AT_rich Low_complexity Low_complexity 1 21 0 335 78 20 0 chr12 31300068 31300119 -112486336 + (TC)n Simple_repeat Simple_repeat 1 52 0 279 313 62 62 chr12 31300241 31300417 -112486038 - L2 LINE L2 -584 2730 2555 650 267 28 0 chr12 31300571 31300751 -112485704 + MIR SINE MIR 70 254 -8 2469 93 0 0 chr12 31300794 31301106 -112485349 - AluY SINE Alu 0 312 1 227 122 100 22 chr12 31301130 31301220 -112485235 + MER63 DNA MER1_type 870 966 -96 3220 31 3 0 chr12 31301240 31301623 -112484832 - L1PA5 LINE L1 -1 6153 5770 39802 63 2 3 chr12 31301623 31307781 -112478674 - L1PA5 LINE L1 -1 6153 1 3248 159 24 28 chr12 31308661 31309333 -112477122 + L1MA9 LINE L1 5644 6312 0 22 35 0 0 chr12 31309341 31309370 -112477085 + AT_rich Low_complexity Low_complexity 1 29 0 193 233 0 0 chr12 31309809 31309852 -112476603 - MIR3 SINE MIR -3 205 163 535 206 22 3 chr12 31310208 31310359 -112476096 + LTR37A LTR ERV1 291 424 -2 2132 79 25 4 chr12 31310402 31310681 -112475774 + AluY SINE Alu 14 298 -13 591 280 151 0 chr12 31310821 31311007 -112475448 + MIR SINE MIR 7 220 -42 1058 244 171 21 chr12 31311247 31311766 -112474689 + MLT2F LTR ERVL 19 663 0 634 293 120 13 chr12 31311838 31311856 -112474599 - L1ME4a LINE L1 -205 5916 5901 1597 168 72 26 chr12 31311856 31312201 -112474254 - MER46B DNA MER2_type 0 236 1 634 293 120 13 chr12 31312201 31312558 -112473897 - L1ME4a LINE L1 -220 5901 5501 19697 164 31 12 chr12 31314223 31314296 -112472159 + L1MA3 LINE L1 13 83 -7641 2063 158 3 0 chr12 31314296 31314607 -112471848 - AluSx SINE Alu 0 312 1 19697 164 31 12 chr12 31314607 31319056 -112467399 + L1MA3 LINE L1 83 4446 -3278 2388 87 3 0 chr12 31319056 31319365 -112467090 - AluY SINE Alu -1 310 1 19697 164 31 12 chr12 31319365 31321569 -112464886 + L1MA3 LINE L1 4446 6890 -834 7644 23 5 0 chr12 31321569 31323167 -112463288 - L1PA2 LINE L1 -1 6154 4553 19697 164 31 12 chr12 31323167 31323809 -112462646 + L1MA3 LINE L1 6890 7518 -206 2415 166 31 5 chr12 31323809 31324226 -112462229 + MSTA LTR MaLR 1 428 0 8334 172 71 2 chr12 31324226 31325771 -112460684 + MSTA-int LTR MaLR 1 1651 0 1545 176 96 33 chr12 31325774 31326097 -112460358 + MSTA LTR MaLR 7 361 -67 2003 141 28 0 chr12 31326097 31326387 -112460068 - AluSx SINE Alu -9 303 6 1545 176 96 33 chr12 31326387 31326460 -112459995 + MSTA LTR MaLR 361 428 0 912 109 31 109 chr12 31326460 31326525 -112459930 + L1MA3 LINE L1 7514 7583 -141 1902 153 0 0 chr12 31326525 31326800 -112459655 + AluSx SINE Alu 1 275 -37 201 74 0 0 chr12 31326805 31326832 -112459623 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 912 109 31 109 chr12 31326832 31326989 -112459466 + L1MA3 LINE L1 7587 7724 0 7128 55 3 0 chr12 31327761 31329165 -112457290 - L1PA7 LINE L1 -13 6141 4736 214 147 0 0 chr12 31329666 31329700 -112456755 + (CA)n Simple_repeat Simple_repeat 1 34 0 1050 288 66 58 chr12 31329745 31330380 -112456075 - ERVL LTR ERVL -384 5380 4741 1009 219 46 28 chr12 31330429 31330754 -112455701 - L1M4 LINE L1 -1727 4419 4089 371 169 81 105 chr12 31330754 31330878 -112455577 - LTR50 LTR ERVL -280 515 395 674 227 167 35 chr12 31330911 31331193 -112455262 - LTR50 LTR ERVL -474 321 3 207 259 0 0 chr12 31332387 31332441 -112454014 + T-rich Low_complexity Low_complexity 2 55 0 7724 24 9 0 chr12 31332803 31333998 -112452457 - L1PA3 LINE L1 0 6155 4957 1507 231 14 6 chr12 31334011 31334357 -112452098 + MLT1A1 LTR MaLR 1 349 -16 180 0 0 0 chr12 31334358 31334378 -112452077 + (AATAG)n Simple_repeat Simple_repeat 2 21 0 1701 173 75 21 chr12 31334876 31335224 -112451231 + MLT2D LTR ERVL 1 329 -85 189 0 0 0 chr12 31335224 31335245 -112451210 + (TC)n Simple_repeat Simple_repeat 2 22 0 321 26 0 0 chr12 31335247 31335285 -112451170 + (CA)n Simple_repeat Simple_repeat 1 38 0 1701 173 75 21 chr12 31335285 31335320 -112451135 + MLT2D LTR ERVL 329 408 -6 536 280 101 0 chr12 31335321 31335489 -112450966 - MIR SINE MIR -73 189 5 534 220 89 6 chr12 31339544 31339712 -112446743 + MER53 DNA DNA 8 189 0 40691 37 21 1 chr12 31340491 31346515 -112439940 - L1PA3 LINE L1 -4 6151 2 234 267 82 20 chr12 31346816 31346833 -112439622 - L1MA10 LINE L1 -2 6332 6316 2398 242 56 31 chr12 31346833 31348503 -112437952 - L1ME2 LINE L1 -9 6155 4457 2844 123 11 19 chr12 31348549 31349016 -112437439 - Tigger3(Golem) DNA MER2_type -1 3028 2566 4076 156 23 6 chr12 31349016 31349175 -112437280 + Tigger2 DNA MER2_type 2 157 -2561 2093 133 0 0 chr12 31349175 31349476 -112436979 + AluSg SINE Alu 2 302 -8 4076 156 23 6 chr12 31349476 31350046 -112436409 + Tigger2 DNA MER2_type 157 744 -1974 960 184 127 0 chr12 31350113 31350341 -112436114 + Tigger2 DNA MER2_type 2452 2708 -10 556 212 0 9 chr12 31350349 31350462 -112435993 - Tigger3(Golem) DNA MER2_type -2917 112 1 1257 250 93 19 chr12 31350462 31351002 -112435453 - L1ME2 LINE L1 -1710 4436 3847 1904 120 0 11 chr12 31351002 31351277 -112435178 - AluSc SINE Alu -15 294 23 1257 250 93 19 chr12 31351277 31351324 -112435131 - L1ME2 LINE L1 -2299 3847 3805 312 202 12 60 chr12 31351491 31351575 -112434880 + L1M4 LINE L1 3088 3167 -2979 * 840 300 3 18 chr12 31351558 31351888 -112434567 + L1M4 LINE L1 3456 3780 -2366 2342 112 0 0 chr12 31352193 31352505 -112433950 - AluSq SINE Alu 0 313 2 287 305 0 38 chr12 31353293 31353398 -112433057 - MER117 DNA MER1_type 0 197 97 427 229 296 28 chr12 31353436 31353615 -112432840 - MIR SINE MIR -17 245 19 2340 39 42 0 chr12 31353714 31353997 -112432458 + AluY SINE Alu 1 295 -16 2990 177 35 30 chr12 31353997 31354720 -112431735 + MER11A LTR ERVK 359 1266 0 1730 173 0 24 chr12 31355043 31355332 -112431123 - AluJo SINE Alu -30 282 1 2445 74 7 0 chr12 31355340 31355639 -112430816 - AluY SINE Alu -10 301 1 593 141 12 0 chr12 31355640 31355725 -112430730 - AluJo SINE Alu -178 134 49 187 259 74 19 chr12 31356677 31356731 -112429724 + L3b LINE CR1 1291 1347 -236 1057 235 37 7 chr12 31357856 31358128 -112428327 - L1MB7 LINE L1 0 6184 5905 343 350 19 6 chr12 31358130 31358287 -112428168 - L1MEc LINE L1 -4594 1802 1644 248 195 149 35 chr12 31359499 31359586 -112426869 - MIR SINE MIR -5 257 161 411 316 31 25 chr12 31360259 31360455 -112426000 + MER117 DNA MER1_type 1 197 0 874 226 0 87 chr12 31361292 31361487 -112424968 + MER45A DNA AcHobo 1 178 0 219 179 83 24 chr12 31361999 31362083 -112424372 + (CATG)n Simple_repeat Simple_repeat 4 92 0 233 204 88 29 chr12 31362211 31362348 -112424107 + (CATG)n Simple_repeat Simple_repeat 4 148 0 263 245 90 0 chr12 31363694 31363849 -112422606 + (CATG)n Simple_repeat Simple_repeat 2 170 0 309 238 66 20 chr12 31364304 31364455 -112422000 + (CATG)n Simple_repeat Simple_repeat 3 160 0 270 253 71 12 chr12 31364493 31364663 -112421792 + (TATG)n Simple_repeat Simple_repeat 1 180 0 349 222 64 35 chr12 31364687 31364858 -112421597 + (CATG)n Simple_repeat Simple_repeat 2 177 0 421 242 73 0 chr12 31364958 31365123 -112421332 + (CATG)n Simple_repeat Simple_repeat 2 178 0 3119 85 30 7 chr12 31365234 31365670 -112420785 - L1PA8 LINE L1 -33 6139 5694 1715 126 96 11 chr12 31365670 31365941 -112420514 - AluSg SINE Alu -16 294 1 352 241 117 88 chr12 31365951 31366372 -112420083 - MER34C LTR ERV1 -105 437 2 * 632 235 56 51 chr12 31366372 31366564 -112419891 - MER77 LTR ERV1 -357 248 56 1486 264 43 0 chr12 31366668 31367036 -112419419 - MER63 DNA MER1_type -3 1058 675 1424 154 56 79 chr12 31367042 31367221 -112419234 - MER45R DNA AcHobo -414 1167 985 2037 88 40 0 chr12 31367221 31367493 -112418962 + AluSx SINE Alu 1 283 -29 1424 154 56 79 chr12 31367493 31367837 -112418618 - MER45R DNA AcHobo -596 985 586 1133 291 110 20 chr12 31367844 31368335 -112418120 + MER34 LTR ERV1 8 542 0 516 260 68 64 chr12 31368335 31368610 -112417845 - MER45R DNA AcHobo -994 587 312 832 150 36 14 chr12 31368920 31369060 -112417395 - MER31A LTR ERV1 0 485 343 285 81 0 0 chr12 31369056 31369093 -112417362 + MER31A LTR ERV1 118 154 -331 * 772 139 16 0 chr12 31369091 31369213 -112417242 - MER31A LTR ERV1 -361 124 1 2023 109 11 0 chr12 31369654 31369970 -112416485 - AluSc SINE Alu 0 319 1 813 182 0 0 chr12 31370363 31370495 -112415960 - FLAM_C SINE Alu -1 132 1 21 36 0 0 chr12 31371295 31371323 -112415132 + AT_rich Low_complexity Low_complexity 1 28 0 382 274 108 110 chr12 31372148 31372674 -112413781 - L1M2 LINE L1 -5713 1136 612 1393 209 7 20 chr12 31374390 31374692 -112411763 - AluJo SINE Alu -9 303 6 191 357 0 0 chr12 31375198 31375254 -112411201 - MIR SINE MIR -13 249 194 4398 191 65 32 chr12 31375381 31376529 -112409926 - L1MD2 LINE L1 -3 6356 5176 1682 263 77 58 chr12 31376854 31377505 -112408950 + MLT2F LTR ERVL 1 663 0 2214 103 7 3 chr12 31378848 31379140 -112407315 + AluSc SINE Alu 1 293 -16 653 289 53 33 chr12 31379239 31379543 -112406912 + L2 LINE L2 2809 3118 -195 308 257 21 78 chr12 31380240 31380381 -112406074 + MER21B LTR ERV1 22 197 -408 * 1300 266 54 67 chr12 31380351 31380982 -112405473 + MER21B LTR ERV1 98 720 -143 248 302 122 29 chr12 31381933 31382072 -112404383 + MER5B DNA MER1_type 27 178 0 1200 330 18 48 chr12 31382083 31382756 -112403699 + ERVL LTR ERVL 1213 1865 -3899 189 0 0 0 chr12 31382800 31382821 -112403634 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 817 278 135 18 chr12 31383723 31384171 -112402284 - Charlie8 DNA MER1_type -2141 276 2 264 349 47 9 chr12 31384253 31384359 -112402096 - L2 LINE L2 -1 3312 3203 272 331 33 26 chr12 31384632 31384783 -112401672 + L2 LINE L2 3158 3309 -4 767 355 103 2 chr12 31384918 31385324 -112401131 - L3 LINE CR1 -725 852 406 257 115 0 39 chr12 31386273 31386325 -112400130 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 383 290 98 22 chr12 31386326 31386509 -112399946 - L1ME LINE L1 -428 5693 5497 276 241 72 0 chr12 31388399 31388482 -112397973 + L1MC4 LINE L1 6615 6703 -1339 2182 124 0 10 chr12 31388989 31389287 -112397168 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr12 31389306 31389327 -112397128 + AT_rich Low_complexity Low_complexity 1 21 0 1229 281 48 34 chr12 31389408 31389845 -112396610 + Charlie2 DNA MER1_type 32 474 -2308 3525 232 113 12 chr12 31389901 31391113 -112395342 + Charlie2a DNA MER1_type 1528 2861 -1 794 179 0 0 chr12 31391731 31391854 -112394601 - FRAM SINE Alu -27 149 27 1056 189 66 46 chr12 31391856 31392115 -112394340 - MER99 DNA DNA -361 467 204 1732 134 27 30 chr12 31394045 31394343 -112392112 - AluJb SINE Alu -15 297 1 479 227 69 74 chr12 31394762 31394978 -112391477 - L1MC4 LINE L1 -7 8035 7821 232 157 39 0 chr12 31395007 31395058 -112391397 - L1MC4 LINE L1 -413 7629 7577 258 215 17 64 chr12 31395058 31395230 -112391225 + (TATAA)n Simple_repeat Simple_repeat 1 164 0 * 340 150 69 35 chr12 31395211 31395439 -112391016 + (TA)n Simple_repeat Simple_repeat 1 235 0 1884 214 111 94 chr12 31395536 31396017 -112390438 - L1MC4 LINE L1 -502 7540 7036 1733 145 176 0 chr12 31396017 31396313 -112390142 - MER7A DNA MER2_type 0 346 1 1884 214 111 94 chr12 31396313 31396696 -112389759 - L1MC4 LINE L1 -1006 7036 6661 1972 141 7 3 chr12 31396729 31397028 -112389427 - AluJb SINE Alu -12 300 1 2645 84 5 79 chr12 31398204 31398597 -112387858 + THE1B LTR MaLR 1 364 0 969 184 32 22 chr12 31398797 31398982 -112387473 + MER20 DNA MER1_type 30 216 -3 387 276 151 33 chr12 31399883 31400035 -112386420 - MIR SINE MIR -69 193 24 284 190 51 25 chr12 31400816 31400895 -112385560 - Charlie3 DNA MER1_type -300 2410 2330 21 0 0 0 chr12 31401080 31401101 -112385354 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 31402046 31402067 -112384388 + AT_rich Low_complexity Low_complexity 1 21 0 2231 114 0 0 chr12 31402077 31402376 -112384079 + AluSc SINE Alu 1 299 -10 189 371 0 0 chr12 31402479 31402541 -112383914 - L2 LINE L2 -77 3195 3134 396 207 99 9 chr12 31402698 31402809 -112383646 - MIR SINE MIR -113 149 29 509 312 116 5 chr12 31403511 31403899 -112382556 - L1ME2 LINE L1 -280 5884 5454 453 268 122 30 chr12 31403947 31404079 -112382376 + HAL1 LINE L1 2075 2194 -313 240 59 0 0 chr12 31404079 31404113 -112382342 + (TG)n Simple_repeat Simple_repeat 2 35 0 453 268 122 30 chr12 31404113 31404342 -112382113 + HAL1 LINE L1 2194 2469 -38 269 288 0 0 chr12 31404681 31404747 -112381708 + CT-rich Low_complexity Low_complexity 1 66 0 1963 137 46 8 chr12 31405174 31405525 -112380930 - MER93b LTR ERV1 0 373 10 683 285 109 33 chr12 31405696 31406146 -112380309 - L2 LINE L2 -1 3312 2898 297 0 0 0 chr12 31406146 31406179 -112380276 + (TG)n Simple_repeat Simple_repeat 2 34 0 683 285 109 33 chr12 31406179 31406531 -112379924 - L2 LINE L2 -415 2898 2369 294 288 68 34 chr12 31406748 31406866 -112379589 + L2 LINE L2 3147 3268 -4 1655 216 50 12 chr12 31407085 31407502 -112378953 + MER63B DNA MER1_type 4 436 0 581 309 68 9 chr12 31407546 31407766 -112378689 - MIR SINE MIR -27 235 3 579 270 161 5 chr12 31408286 31408497 -112377958 + MIR SINE MIR 7 250 -12 535 222 56 0 chr12 31409249 31409357 -112377098 - L2 LINE L2 0 3313 3200 2213 114 13 0 chr12 31410595 31410901 -112375554 - AluSx SINE Alu -2 310 1 998 197 0 16 chr12 31411132 31411315 -112375140 + AluJo SINE Alu 120 299 -13 883 51 0 17 chr12 31411829 31411947 -112374508 - L1PA4 LINE L1 -2 6153 6038 743 301 36 16 chr12 31412955 31413204 -112373251 + MIR SINE MIR 2 255 -7 21 0 0 0 chr12 31413574 31413595 -112372860 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr12 31413942 31413980 -112372475 + AT_rich Low_complexity Low_complexity 1 38 0 262 323 57 40 chr12 31414634 31414758 -112371697 + MIR SINE MIR 19 144 -64 1254 208 36 40 chr12 31415470 31415572 -112370883 + AluJo SINE Alu 1 102 -210 3062 74 18 48 chr12 31415572 31416030 -112370425 - MLT2A1 LTR ERVL 0 444 1 1254 208 36 40 chr12 31416030 31416230 -112370225 + AluJo SINE Alu 102 302 -10 2026 145 3 0 chr12 31416236 31416533 -112369922 + AluSg SINE Alu 1 298 -12 186 43 0 0 chr12 31416924 31416947 -112369508 + (TG)n Simple_repeat Simple_repeat 2 24 0 299 325 206 5 chr12 31417984 31418178 -112368277 + MIR SINE MIR 13 245 -17 281 295 122 19 chr12 31418394 31418550 -112367905 - MIR SINE MIR -68 194 23 2328 79 23 0 chr12 31418701 31419005 -112367450 - AluSp SINE Alu -2 311 1 2257 112 0 0 chr12 31419524 31419827 -112366628 + AluSg SINE Alu 1 303 -7 758 271 31 26 chr12 31420741 31420970 -112365485 - MIR SINE MIR -4 258 29 572 222 105 0 chr12 31422938 31423091 -112363364 + MIR SINE MIR 31 199 -63 246 278 157 17 chr12 31423113 31423228 -112363227 - MIR SINE MIR -62 146 16 616 35 118 0 chr12 31424605 31424690 -112361765 - MER85 DNA T2_type -44 95 1 1682 143 24 0 chr12 31424791 31425042 -112361413 + AluSq SINE Alu 1 257 -56 506 283 0 8 chr12 31426364 31426484 -112359971 + L2 LINE L2 3194 3312 -1 230 149 75 60 chr12 31426729 31426796 -112359659 - LTR33A LTR ERVL -335 188 121 199 220 40 0 chr12 31426927 31426977 -112359478 - L2 LINE L2 -84 3229 3178 650 224 59 0 chr12 31427033 31427185 -112359270 - MIR SINE MIR -81 181 21 1960 133 3 7 chr12 31427224 31427525 -112358930 - AluSg SINE Alu -10 300 1 186 232 159 14 chr12 31427586 31427655 -112358800 - MER5A DNA MER1_type -80 109 31 199 259 93 0 chr12 31427735 31427789 -112358666 + MIR3 SINE MIR 125 183 -25 946 155 20 0 chr12 31428282 31428456 -112357999 + FRAM SINE Alu 1 171 0 2336 75 0 0 chr12 31428566 31428888 -112357567 + AluY SINE Alu 1 322 0 1102 138 12 0 chr12 31430745 31430905 -112355550 + AluSp SINE Alu 138 299 -14 2192 105 9 29 chr12 31430915 31431230 -112355225 + AluSx SINE Alu 1 309 -3 661 278 50 56 chr12 31431550 31432172 -112354283 - L1ME3A LINE L1 -243 5910 5293 1334 145 100 52 chr12 31432534 31432803 -112353652 - AluJo SINE Alu -30 282 1 471 279 90 60 chr12 31432968 31433291 -112353164 - L1ME3A LINE L1 -1543 4586 4239 2239 125 0 3 chr12 31433291 31433604 -112352851 - AluSx SINE Alu 0 312 1 471 279 90 60 chr12 31433604 31433800 -112352655 - L1ME3A LINE L1 -1890 4239 4051 302 318 19 0 chr12 31433807 31433914 -112352541 - L1ME3A LINE L1 -3316 2813 2705 1959 202 51 20 chr12 31434034 31434540 -112351915 + Charlie1b DNA MER1_type 2 523 0 491 256 107 29 chr12 31434556 31434931 -112351524 - L1ME3A LINE L1 -3516 2613 2210 347 311 69 23 chr12 31435146 31435813 -112350642 - L1MEd LINE L1 -4729 1581 849 307 308 141 32 chr12 31436571 31437068 -112349387 + L1MEd LINE L1 270 820 -5299 305 237 32 38 chr12 31437071 31437203 -112349252 - HsTC2 DNA Tc2 0 1898 35 2377 70 0 0 chr12 31437290 31437574 -112348881 - AluY SINE Alu -11 300 17 1445 289 15 26 chr12 31437574 31438106 -112348349 - L1MEd LINE L1 -5475 644 119 1111 243 55 35 chr12 31438912 31439194 -112347261 - Charlie2 DNA MER1_type 0 2862 2587 2320 58 0 24 chr12 31439194 31439508 -112346947 - AluY SINE Alu 0 307 1 1111 243 55 35 chr12 31439508 31439767 -112346688 - Charlie2 DNA MER1_type -275 2587 2309 364 228 236 31 chr12 31439787 31439914 -112346541 + MIR SINE MIR 1 153 -109 1443 223 0 11 chr12 31439922 31440205 -112346250 + AluJo SINE Alu 3 282 -30 414 0 0 0 chr12 31440208 31440254 -112346201 + (TAA)n Simple_repeat Simple_repeat 2 47 0 2270 112 42 8 chr12 31440258 31440614 -112345841 + THE1C LTR MaLR 8 375 0 334 306 9 0 chr12 31440614 31440722 -112345733 + MIR SINE MIR 154 262 0 1145 231 60 7 chr12 31440731 31441147 -112345308 - Charlie2 DNA MER1_type -569 2293 1856 298 320 40 20 chr12 31441149 31441299 -112345156 - Charlie2 DNA MER1_type -2457 325 173 4221 209 45 47 chr12 31441548 31442056 -112344399 + Charlie1a DNA MER1_type 3 510 -2251 1191 209 85 62 chr12 31442056 31442443 -112344012 - MSTD LTR MaLR 0 396 1 4221 209 45 47 chr12 31442443 31442842 -112343613 + Charlie1a DNA MER1_type 510 908 -1853 1894 176 50 58 chr12 31442842 31442900 -112343555 - MLT2C2 LTR ERVL -3 461 404 402 21 0 0 chr12 31442900 31442947 -112343508 + (TG)n Simple_repeat Simple_repeat 2 48 0 1894 176 50 58 chr12 31442947 31443353 -112343102 - MLT2C2 LTR ERVL -60 404 1 4221 209 45 47 chr12 31443353 31443774 -112342681 + Charlie1a DNA MER1_type 908 1330 -125 2538 74 0 6 chr12 31444206 31444518 -112341937 - AluY SINE Alu -1 310 1 1669 179 15 0 chr12 31444963 31445237 -112341218 + AluJo SINE Alu 1 278 -34 392 150 56 4 chr12 31445253 31445728 -112340727 + (TA)n Simple_repeat Simple_repeat 1 499 0 525 239 69 64 chr12 31446826 31447014 -112339441 - MIR SINE MIR -36 226 38 312 297 18 18 chr12 31448096 31448207 -112338248 + L2 LINE L2 3197 3307 -6 3133 142 17 4 chr12 31450414 31450956 -112335499 - MER34C LTR ERV1 0 585 37 445 326 107 82 chr12 31451115 31451750 -112334705 - L3 LINE CR1 -229 1348 698 180 152 0 0 chr12 31451854 31451887 -112334568 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 658 128 9 9 chr12 31452142 31452251 -112334204 - THE1B LTR MaLR 0 364 256 * 705 84 149 0 chr12 31452249 31452356 -112334099 - THE1B LTR MaLR -241 123 1 2169 120 3 10 chr12 31453070 31453379 -112333076 - AluSx SINE Alu -5 307 1 491 300 131 35 chr12 31453520 31453893 -112332562 + MLT1E LTR MaLR 2 410 -183 235 133 89 0 chr12 31453892 31453937 -112332518 + MLT1E LTR MaLR 519 567 0 * 1281 242 54 19 chr12 31454587 31455016 -112331439 - LTR16B LTR ERVL -17 447 4 201 250 0 0 chr12 31455365 31455409 -112331046 - MIR SINE MIR -2 260 217 1570 140 112 4 chr12 31455742 31456020 -112330435 + AluSg1 SINE Alu 1 308 -1 1075 181 0 0 chr12 31456020 31456191 -112330264 + AluJo/FRAM SINE Alu 128 298 -14 24 32 0 0 chr12 31456191 31456222 -112330233 + AT_rich Low_complexity Low_complexity 1 31 0 1773 130 65 14 chr12 31456300 31456592 -112329863 + AluJb SINE Alu 1 307 -5 821 229 51 21 chr12 31457804 31458270 -112328185 - LTR48B LTR ERV1 -50 594 11 * 1086 219 94 88 chr12 31458262 31458760 -112327695 + MLT2B1 LTR ERVL 12 512 -8 512 288 0 16 chr12 31459098 31459223 -112327232 - L2 LINE L2 -1 3312 3190 324 0 0 0 chr12 31460412 31460448 -112326007 + (TA)n Simple_repeat Simple_repeat 1 36 0 740 208 68 76 chr12 31460574 31460637 -112325818 + MLT1D LTR MaLR 2 64 -403 2190 110 7 0 chr12 31460637 31460938 -112325517 + AluSc SINE Alu 1 303 -6 740 208 68 76 chr12 31460938 31461275 -112325180 + MLT1D LTR MaLR 64 401 -66 2174 94 22 0 chr12 31461275 31461584 -112324871 - AluSq SINE Alu 0 315 1 740 208 68 76 chr12 31461584 31461645 -112324810 + MLT1D LTR MaLR 401 461 -6 1274 152 0 0 chr12 31461732 31461942 -112324513 - MER2 DNA MER2_type -135 210 1 267 165 18 9 chr12 31462552 31462633 -112323822 - L1ME1 LINE L1 -1 6177 6095 2060 108 29 42 chr12 31462637 31463015 -112323440 + L1MA5 LINE L1 5926 6298 -2 474 159 0 0 chr12 31463045 31463133 -112323322 + L1MA5A LINE L1 6208 6295 -2 2109 240 60 14 chr12 31463158 31463824 -112322631 - L1MB7 LINE L1 -93 6091 5395 3187 150 39 73 chr12 31464673 31465388 -112321067 - LTR8 LTR ERV1 0 691 1 326 283 27 53 chr12 31465632 31465819 -112320636 + MARNA DNA Mariner 63 244 -342 1709 87 4 9 chr12 31466672 31466901 -112319554 + AluSg SINE Alu 45 272 -38 340 140 0 0 chr12 31466901 31466958 -112319497 + Alu SINE Alu 241 297 -4 368 227 25 67 chr12 31466958 31467077 -112319378 - MLT1J LTR MaLR -32 479 366 616 340 86 56 chr12 31467558 31468002 -112318453 + L2 LINE L2 2811 3267 -5 246 352 74 43 chr12 31468415 31468577 -112317878 + L2 LINE L2 3101 3267 -5 1256 227 35 27 chr12 31469384 31469754 -112316701 - MER93b LTR ERV1 0 373 1 322 190 38 0 chr12 31469755 31469834 -112316621 - MER65-int LTR ERV1 -395 7142 7061 549 313 10 0 chr12 31469951 31470143 -112316312 - MER65-int LTR ERV1 -536 7001 6808 553 250 73 26 chr12 31470191 31470397 -112316058 - MER65-int LTR ERV1 -252 4684 3777 2531 182 54 19 chr12 31470412 31471000 -112315455 - MER65-int LTR ERV1 -603 4333 3725 250 267 168 0 chr12 31471226 31471327 -112315128 + L2 LINE L2 3193 3310 -3 470 242 13 60 chr12 31471440 31471589 -112314866 - MIR SINE MIR -101 161 20 239 209 45 15 chr12 31472371 31472438 -112314017 - LTR67 LTR ERVL 0 557 489 242 341 90 12 chr12 31473237 31473404 -112313051 + L2 LINE L2 1913 2092 -1222 235 232 29 14 chr12 31473885 31473954 -112312501 + L3 LINE CR1 654 723 -854 1086 314 52 77 chr12 31474030 31474175 -112312280 + L3 LINE CR1 879 1026 -551 2231 119 0 19 chr12 31474175 31474485 -112311970 + AluSx SINE Alu 1 304 -8 1086 314 52 77 chr12 31474485 31474935 -112311520 + L3 LINE CR1 1026 1459 -118 332 312 0 40 chr12 31475050 31475175 -112311280 - L2 LINE L2 -14 3299 3180 402 345 36 36 chr12 31475187 31475381 -112311074 + MER91A DNA MER1_type 1 194 -2 754 295 183 25 chr12 31475383 31475833 -112310622 - L2 LINE L2 -140 3173 2491 279 276 20 20 chr12 31475838 31475936 -112310519 - MLT1K LTR MaLR -81 507 410 1944 144 19 22 chr12 31475989 31476302 -112310153 + AluJo SINE Alu 1 312 0 1890 188 78 37 chr12 31476685 31476786 -112309669 - MLT1D LTR MaLR 0 505 410 1864 146 168 8 chr12 31476786 31477155 -112309300 + MSTA LTR MaLR 1 428 0 1890 188 78 37 chr12 31477155 31477538 -112308917 - MLT1D LTR MaLR -95 410 1 2106 113 3 0 chr12 31478373 31478701 -112307754 - AluSx SINE Alu 0 329 1 818 261 17 6 chr12 31479794 31479974 -112306481 - MER5A DNA MER1_type 0 189 8 753 318 98 19 chr12 31480128 31480506 -112305949 + L2 LINE L2 2902 3309 -4 2354 78 16 16 chr12 31480535 31480841 -112305614 - AluSg SINE Alu -3 307 2 1029 274 81 58 chr12 31481148 31481788 -112304667 - L2 LINE L2 -1 3312 2669 225 229 21 0 chr12 31481896 31481944 -112304511 - L2 LINE L2 -5 3267 3219 241 255 0 85 chr12 31483101 31483195 -112303260 + MIR SINE MIR 32 117 -145 818 259 44 0 chr12 31483208 31483413 -112303042 + MIR SINE MIR 15 228 -34 259 297 131 35 chr12 31483684 31483829 -112302626 + MIR SINE MIR 48 206 -56 209 317 93 58 chr12 31484714 31484919 -112301536 + L3b LINE CR1 1132 1343 -240 263 212 45 15 chr12 31485450 31485516 -112300939 - MLT1J2 LTR MaLR -39 411 344 233 227 40 13 chr12 31485554 31485629 -112300826 - MLT1J2 LTR MaLR -307 143 67 2102 223 82 13 chr12 31485683 31486229 -112300226 - MLT1E LTR MaLR 0 593 10 509 320 33 13 chr12 31486241 31486394 -112300061 - MIR SINE MIR -104 158 3 282 335 87 60 chr12 31486461 31486727 -112299728 - L2 LINE L2 -588 2726 2454 661 306 215 10 chr12 31486761 31487157 -112299298 + L2 LINE L2 2837 3313 0 246 378 39 17 chr12 31487244 31487424 -112299031 - L2 LINE L2 -2418 896 713 333 242 40 40 chr12 31487623 31487722 -112298733 - MIR SINE MIR -82 180 82 257 190 0 52 chr12 31487889 31487947 -112298508 - L2 LINE L2 -1 3312 3258 44 35 0 0 chr12 31488012 31488070 -112298385 + AT_rich Low_complexity Low_complexity 1 58 0 2108 146 0 0 chr12 31489591 31489885 -112296570 - AluSx SINE Alu -18 294 1 2693 170 22 4 chr12 31489896 31490396 -112296059 - L1PB4 LINE L1 0 6156 5648 299 292 108 33 chr12 31490396 31490516 -112295939 - MIR SINE MIR -114 148 20 200 189 0 0 chr12 31491700 31491737 -112294718 + (CAATT)n Simple_repeat Simple_repeat 3 39 0 2363 134 54 66 chr12 31493404 31493698 -112292757 - MER4B LTR ERV1 0 779 483 5380 136 34 54 chr12 31493698 31494791 -112291664 - MER11C LTR ERVK 0 1071 1 2363 134 54 66 chr12 31494791 31495041 -112291414 - MER4B LTR ERV1 -296 483 66 1937 156 0 3 chr12 31495041 31495351 -112291104 + AluSx SINE Alu 3 311 0 2363 134 54 66 chr12 31495351 31495417 -112291038 - MER4B LTR ERV1 -713 66 1 450 285 13 6 chr12 31496535 31496693 -112289762 + HAL1b LINE L1 381 539 -809 256 225 28 0 chr12 31496798 31496869 -112289586 + (TATG)n Simple_repeat Simple_repeat 4 76 0 4476 130 119 1 chr12 31496905 31497644 -112288811 - LTR12 LTR ERV1 0 826 1 668 231 30 50 chr12 31497804 31498103 -112288352 - pTR5 LTR ERV1 -1405 1033 741 1364 195 274 21 chr12 31498389 31498999 -112287456 - LTR50 LTR ERVL -31 764 1 973 286 33 0 chr12 31499098 31499461 -112286994 - L1ME3A LINE L1 -313 5857 5483 1953 256 72 68 chr12 31499621 31499702 -112286753 + L2 LINE L2 2272 2351 -962 1648 71 0 0 chr12 31499702 31499898 -112286557 + AluSc SINE Alu 97 292 -17 1953 256 72 68 chr12 31499898 31500352 -112286103 + L2 LINE L2 2351 2816 -497 2320 97 3 0 chr12 31500352 31500651 -112285804 - AluSg SINE Alu -10 300 1 1953 256 72 68 chr12 31500651 31500989 -112285466 + L2 LINE L2 2816 3151 -162 1206 240 42 35 chr12 31501001 31501434 -112285021 - HsTC2 DNA Tc2 -5 1893 1282 303 203 65 65 chr12 31501421 31501559 -112284896 - HsTC2 DNA Tc2 -1747 151 14 * 532 248 0 16 chr12 31501568 31501697 -112284758 + L2 LINE L2 3153 3279 -34 234 91 0 0 chr12 31501789 31501822 -112284633 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 657 219 0 0 chr12 31502266 31502389 -112284066 - FLAM_A SINE Alu -10 123 1 363 98 0 0 chr12 31503239 31503300 -112283155 + (TG)n Simple_repeat Simple_repeat 2 62 0 27 29 0 0 chr12 31503434 31503468 -112282987 + AT_rich Low_complexity Low_complexity 1 34 0 1313 205 124 54 chr12 31503709 31504079 -112282376 - MSTD LTR MaLR 0 396 1 6819 209 73 43 chr12 31504079 31505761 -112280694 - MSTD-int LTR MaLR 0 1735 4 1567 227 67 8 chr12 31505765 31506139 -112280316 - MSTD LTR MaLR 0 396 1 289 345 134 18 chr12 31508664 31508835 -112277620 + MIR SINE MIR 53 243 -19 235 132 0 0 chr12 31508835 31508873 -112277582 + U3 snRNA snRNA 1 38 -179 26 30 0 0 chr12 31508984 31509017 -112277438 + AT_rich Low_complexity Low_complexity 1 33 0 2738 107 13 2 chr12 31509017 31509411 -112277044 - L1PA15 LINE L1 0 6165 5768 418 246 24 24 chr12 31509551 31509677 -112276778 - LTR67 LTR ERVL 0 557 432 255 316 126 0 chr12 31510231 31510326 -112276129 + L2 LINE L2 3160 3266 -6 2411 77 0 0 chr12 31512072 31512369 -112274086 - AluY SINE Alu -14 297 1 28 29 0 0 chr12 31512552 31512587 -112273868 + AT_rich Low_complexity Low_complexity 1 35 0 207 250 0 19 chr12 31513737 31513789 -112272666 + MER5A DNA MER1_type 45 95 -94 287 50 0 0 chr12 31514124 31514164 -112272291 - L1MA9 LINE L1 -41 6271 6232 337 180 16 0 chr12 31514169 31514230 -112272225 + Tigger5 DNA MER2_type 8 69 -2254 370 241 0 0 chr12 31514235 31514314 -112272141 - Tigger5 DNA MER2_type -3 2320 2242 * 406 205 0 12 chr12 31514304 31514387 -112272068 + Tigger5 DNA MER2_type 2242 2323 0 653 246 39 26 chr12 31514399 31514631 -112271824 - L1MA9 LINE L1 -89 6223 5989 213 327 0 0 chr12 31514643 31514695 -112271760 + polypyrimidine Low_complexity Low_complexity 3 54 0 231 118 0 0 chr12 31514835 31514869 -112271586 + L2 LINE L2 3271 3304 -9 2013 253 61 67 chr12 31514919 31515839 -112270616 + HAL1 LINE L1 863 1778 -729 1809 116 9 55 chr12 31515839 31516121 -112270334 + L1PA16 LINE L1 5853 6119 -47 2436 48 3 0 chr12 31516121 31516415 -112270040 - AluY SINE Alu -12 299 5 1809 116 9 55 chr12 31516415 31516461 -112269994 + L1PA16 LINE L1 6119 6166 0 2013 253 61 67 chr12 31516461 31516622 -112269833 + HAL1 LINE L1 1778 1938 -569 365 147 15 0 chr12 31516747 31516815 -112269640 + HAL1 LINE L1 2321 2389 -118 626 291 25 20 chr12 31517071 31517274 -112269181 - MIR SINE MIR -6 256 53 1773 219 23 92 chr12 31517437 31518144 -112268311 - L1MC4 LINE L1 -571 7471 6814 40658 52 3 1 chr12 31518858 31525029 -112261426 + L1PA5 LINE L1 11 6196 0 24 53 0 0 chr12 31525040 31525078 -112261377 + AT_rich Low_complexity Low_complexity 1 38 0 364 236 160 25 chr12 31525481 31525718 -112260737 + L1M4 LINE L1 3048 3316 -2830 296 127 18 0 chr12 31527090 31527145 -112259310 + GA-rich Low_complexity Low_complexity 1 56 0 5455 122 24 7 chr12 31528117 31529151 -112257304 - L1PA13 LINE L1 -4 6159 5119 613 294 117 58 chr12 31530286 31530873 -112255582 + L2 LINE L2 2716 3313 0 4426 193 30 26 chr12 31531155 31533060 -112253395 + L1MA10 LINE L1 4411 6333 -1 495 286 199 23 chr12 31533921 31534222 -112252233 - L3 LINE CR1 -6 1571 1218 21 71 0 0 chr12 31534413 31534455 -112252000 + AT_rich Low_complexity Low_complexity 1 42 0 498 264 135 0 chr12 31534656 31534804 -112251651 + MIR SINE MIR 47 214 -48 1108 140 19 0 chr12 31534804 31534961 -112251494 - FRAM SINE Alu -19 157 1 2277 139 47 75 chr12 31535252 31535264 -112251191 + L1MA7 LINE L1 5773 5784 -507 216 0 0 0 chr12 31535264 31535288 -112251167 + (CA)n Simple_repeat Simple_repeat 2 25 0 2277 139 47 75 chr12 31535288 31535569 -112250886 + L1MA7 LINE L1 5784 6047 -244 1718 138 3 84 chr12 31535569 31535902 -112250553 - AluJb SINE Alu -2 310 5 2277 139 47 75 chr12 31535902 31536139 -112250316 + L1MA7 LINE L1 6047 6289 -2 1974 148 3 3 chr12 31536391 31536688 -112249767 - AluSx SINE Alu -15 297 1 227 276 129 35 chr12 31537896 31538066 -112248389 + L2 LINE L2 2660 2845 -469 321 297 52 71 chr12 31538184 31538339 -112248116 + L2 LINE L2 3117 3268 -4 27 29 0 0 chr12 31540394 31540428 -112246027 + AT_rich Low_complexity Low_complexity 1 34 0 690 209 50 0 chr12 31540529 31540668 -112245787 + MER21B LTR ERV1 14 159 -704 268 204 19 0 chr12 31540819 31540873 -112245582 + Tigger5 DNA MER2_type 1 55 -2268 285 155 35 0 chr12 31540929 31540987 -112245468 - Tigger5 DNA MER2_type -2235 88 29 8495 47 1 0 chr12 31540989 31541954 -112244501 - LTR5 LTR ERVK -3 966 1 370 202 0 22 chr12 31542002 31542091 -112244364 + Tigger5 DNA MER2_type 2237 2323 0 1105 188 10 0 chr12 31542102 31542310 -112244145 + MER2 DNA MER2_type 1 210 -135 3014 77 36 36 chr12 31542375 31542818 -112243637 - MLT2A1 LTR ERVL -1 443 1 17398 68 6 1 chr12 31542818 31545102 -112241353 - HERVL-A1 LTR ERVL 0 5654 3361 292 280 0 0 chr12 31545449 31545524 -112240931 - MIR SINE MIR -115 147 73 26 30 0 0 chr12 31546009 31546042 -112240413 + AT_rich Low_complexity Low_complexity 1 33 0 213 359 0 0 chr12 31547046 31547110 -112239345 - L2 LINE L2 -12 3260 3197 21 0 0 0 chr12 31547121 31547142 -112239313 + AT_rich Low_complexity Low_complexity 1 21 0 465 295 88 33 chr12 31547199 31547562 -112238893 + L1MCa LINE L1 20 402 -6024 446 215 0 48 chr12 31548529 31548582 -112237873 - MER63 DNA MER1_type -37 1651 1597 1895 127 81 19 chr12 31548582 31548905 -112237550 - MER61A LTR ERV1 0 343 1 446 215 0 48 chr12 31548905 31548967 -112237488 - MER63 DNA MER1_type -91 1597 689 1035 259 49 40 chr12 31549271 31549718 -112236737 + MLT1C LTR MaLR 1 451 -16 2012 205 93 23 chr12 31550710 31551302 -112235153 - MLT1E2 LTR MaLR -2 624 4 1716 173 14 78 chr12 31551354 31551845 -112234610 + L1M2 LINE L1 5167 5630 -682 2035 337 109 23 chr12 31552124 31553363 -112233092 + L3 LINE CR1 185 1529 -48 22 35 0 0 chr12 31554115 31554144 -112232311 + AT_rich Low_complexity Low_complexity 1 29 0 245 308 47 47 chr12 31554543 31554650 -112231805 - MIR SINE MIR -79 129 23 329 321 203 8 chr12 31555768 31556100 -112230355 - L2 LINE L2 0 3313 2876 1321 206 67 50 chr12 31557438 31557797 -112228658 - MLT1A1 LTR MaLR 0 365 1 217 328 37 74 chr12 31558738 31558927 -112227528 - MIR SINE MIR -1 261 80 220 130 78 143 chr12 31559041 31559074 -112227381 + MER5A DNA MER1_type 41 75 -114 4466 48 12 0 chr12 31559074 31559634 -112226821 + L1PA7 LINE L1 5588 6154 0 220 130 78 143 chr12 31559634 31559677 -112226778 + MER5A DNA MER1_type 75 112 -77 1970 118 0 14 chr12 31559681 31560015 -112226440 - AluY SINE Alu 0 330 1 216 224 69 17 chr12 31560290 31560348 -112226107 - L2 LINE L2 -4 3268 3208 1938 115 6 88 chr12 31560776 31561116 -112225339 + AluSx SINE Alu 1 312 0 460 192 128 24 chr12 31561698 31561839 -112224616 - L1ME2 LINE L1 -3 6331 6018 205 229 0 0 chr12 31562330 31562378 -112224077 - MIR SINE MIR 0 262 215 726 242 45 54 chr12 31562396 31562593 -112223862 + MIR SINE MIR 12 208 -54 6857 25 4 1 chr12 31562593 31563407 -112223048 + L1PA3 LINE L1 5340 6155 0 726 242 45 54 chr12 31563407 31563432 -112223023 + MIR SINE MIR 208 232 -30 5223 211 37 28 chr12 31563898 31565984 -112220471 + L1MB8 LINE L1 4040 6162 -16 1872 280 33 23 chr12 31566004 31566903 -112219552 + L1M4 LINE L1 2248 3155 -2991 224 219 16 31 chr12 31566941 31567005 -112219450 + MIR SINE MIR 200 262 0 451 302 58 0 chr12 31567178 31567367 -112219088 - MIR SINE MIR -6 256 57 334 324 74 6 chr12 31569405 31569581 -112216874 + MER5A DNA MER1_type 2 189 0 207 265 73 0 chr12 31569844 31569912 -112216543 - MIR SINE MIR -138 124 52 505 139 0 0 chr12 31570835 31570914 -112215541 - L1MA2 LINE L1 -14 6290 6212 2066 199 13 55 chr12 31571042 31571570 -112214885 - L1MB8 LINE L1 -6 6172 5667 1942 141 6 28 chr12 31571869 31572188 -112214267 - AluSx SINE Alu 0 312 1 234 0 0 0 chr12 31573849 31573875 -112212580 + (TG)n Simple_repeat Simple_repeat 1 26 0 995 192 29 0 chr12 31574542 31574750 -112211705 + L1PA16 LINE L1 5947 6160 -6 187 326 114 8 chr12 31575720 31575852 -112210603 + MIR3 SINE MIR 3 148 -60 292 319 99 0 chr12 31576053 31576144 -112210311 + MIR SINE MIR 29 128 -80 228 86 0 0 chr12 31577278 31577313 -112209142 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr12 31578157 31578178 -112208277 + AT_rich Low_complexity Low_complexity 1 21 0 334 182 0 15 chr12 31578635 31578701 -112207754 - MER103 DNA DNA -98 68 4 264 30 0 0 chr12 31580397 31580430 -112206025 + (ATTG)n Simple_repeat Simple_repeat 3 35 0 32 57 0 0 chr12 31580956 31581009 -112205446 + AT_rich Low_complexity Low_complexity 1 53 0 288 305 86 9 chr12 31581943 31582048 -112204407 - MIR SINE MIR -50 212 100 22 56 0 0 chr12 31582050 31582086 -112204369 + AT_rich Low_complexity Low_complexity 1 36 0 1905 158 117 28 chr12 31582367 31582760 -112203695 + MSTA LTR MaLR 1 428 0 21 36 0 0 chr12 31583035 31583063 -112203392 + AT_rich Low_complexity Low_complexity 1 28 0 4815 39 2 0 chr12 31583801 31584388 -112202067 - L1P LINE L1 -1189 4957 4370 * 14572 33 11 1 chr12 31584372 31586167 -112200288 + L1P LINE L1 2535 4348 -1798 2013 138 7 0 chr12 31587711 31588007 -112198448 - AluSx SINE Alu -12 300 3 207 0 0 0 chr12 31588819 31588842 -112197613 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2108 114 31 44 chr12 31589908 31590034 -112196421 - THE1A LTR MaLR 0 355 229 1528 88 0 37 chr12 31590034 31590251 -112196204 - AluSc SINE Alu -4 305 97 2108 114 31 44 chr12 31590251 31590484 -112195971 - THE1A LTR MaLR -126 229 1 7533 28 0 0 chr12 31590878 31591800 -112194655 - L1PA4 LINE L1 0 6155 5235 508 274 84 71 chr12 31591893 31592335 -112194120 + MLT1G1 LTR MaLR 113 589 -6 280 213 107 25 chr12 31593658 31593780 -112192675 - L1ME4a LINE L1 -17 6104 5973 903 202 12 0 chr12 31593916 31594089 -112192366 - L1MC1 LINE L1 0 6333 6159 1358 261 67 13 chr12 31594089 31594465 -112191990 + MSTD LTR MaLR 1 396 0 2682 167 59 25 chr12 31594466 31595024 -112191431 - L1MC1 LINE L1 -171 6162 5586 1336 194 14 48 chr12 31595038 31595327 -112191128 - MSTB2 LTR MaLR 0 457 179 2730 224 62 16 chr12 31595327 31596153 -112190302 - L1MC1 LINE L1 -784 5362 4499 1653 173 24 32 chr12 31596153 31596240 -112190215 - MER44D DNA MER2_type -1883 608 522 2055 149 43 0 chr12 31596240 31596589 -112189866 - MER47A DNA MER2_type -1 365 2 1653 173 24 32 chr12 31596589 31596842 -112189613 - MER44D DNA MER2_type -1969 522 1 1291 267 21 16 chr12 31596842 31597269 -112189186 - L1MC1 LINE L1 -1645 4501 4073 3373 79 7 5 chr12 31597442 31597885 -112188570 + MLT2A1 LTR ERVL 1 444 0 1333 209 90 8 chr12 31598257 31598525 -112187930 - AluJo SINE Alu -12 290 1 210 286 63 0 chr12 31600102 31600165 -112186290 - L2 LINE L2 -3 3310 3244 1003 249 39 50 chr12 31600175 31600512 -112185943 - MER87 LTR ERV1 0 541 209 201 355 95 41 chr12 31600677 31601015 -112185440 - L2 LINE L2 -90 3182 2827 1439 190 116 52 chr12 31601223 31601670 -112184785 - MLT1D LTR MaLR -29 476 1 246 229 16 0 chr12 31602132 31602193 -112184262 + HsTC2 DNA Tc2 1 62 -1836 258 32 0 0 chr12 31602223 31602254 -112184201 + (TC)n Simple_repeat Simple_repeat 2 32 0 1796 224 41 20 chr12 31602416 31602906 -112183549 + MLT1D LTR MaLR 6 505 0 279 79 0 0 chr12 31603168 31603206 -112183249 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 1484 134 47 83 chr12 31603214 31603490 -112182965 - AluSx SINE Alu -44 268 3 190 326 81 12 chr12 31603800 31603886 -112182569 - MIR SINE MIR -14 248 157 1946 189 43 28 chr12 31604141 31604564 -112181891 + MSTB1 LTR MaLR 4 432 0 269 358 21 0 chr12 31605582 31605677 -112180778 + L2 LINE L2 2963 3059 -213 23 0 0 0 chr12 31606433 31606456 -112179999 + AT_rich Low_complexity Low_complexity 1 23 0 1394 98 23 5 chr12 31606468 31606683 -112179772 - L1MA1 LINE L1 -9 6293 6075 272 313 38 69 chr12 31606864 31606995 -112179460 - MIR SINE MIR -124 138 12 410 286 29 29 chr12 31607486 31607626 -112178829 + L2 LINE L2 3174 3313 0 2254 162 37 46 chr12 31607972 31608454 -112178001 - MLT2B2 LTR ERVL -35 480 3 645 252 82 24 chr12 31608517 31608723 -112177732 - MIR SINE MIR -24 238 21 190 304 18 0 chr12 31609200 31609256 -112177199 + MIR SINE MIR 49 105 -157 263 188 47 0 chr12 31610176 31610240 -112176215 - MIR SINE MIR -93 169 103 216 184 0 0 chr12 31611181 31611219 -112175236 + (ATG)n Simple_repeat Simple_repeat 3 40 0 994 319 74 54 chr12 31611273 31611656 -112174799 - MER115 DNA AcHobo -9 684 281 2169 136 21 21 chr12 31611656 31612031 -112174424 + THE1C LTR MaLR 1 375 0 994 319 74 54 chr12 31612031 31612309 -112174146 - MER115 DNA AcHobo -412 281 10 406 243 171 44 chr12 31612316 31612497 -112173958 - MIR SINE MIR -54 208 5 1819 171 72 16 chr12 31612548 31612923 -112173532 + MSTD LTR MaLR 1 396 0 314 243 90 9 chr12 31614028 31614139 -112172316 + L1MC4 LINE L1 7596 7715 -327 321 211 16 49 chr12 31614226 31614349 -112172106 + L1MC4 LINE L1 7922 8040 -2 8887 191 33 44 chr12 31614796 31617005 -112169450 + L1MDa LINE L1 18 2200 -4340 214 184 0 0 chr12 31617142 31617180 -112169275 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 264 111 0 0 chr12 31618058 31618103 -112168352 + (CA)n Simple_repeat Simple_repeat 2 46 0 201 292 97 56 chr12 31619922 31619994 -112166461 - MIR SINE MIR -166 96 22 211 248 143 29 chr12 31620201 31620306 -112166149 + L2 LINE L2 3188 3304 -9 588 194 0 0 chr12 31620780 31620878 -112165577 - FLAM_A SINE Alu -16 126 29 188 362 0 0 chr12 31621127 31621185 -112165270 - MIR SINE MIR -142 120 63 517 278 106 9 chr12 31621921 31622388 -112164067 + MLT1G1 LTR MaLR 1 595 0 22 0 0 0 chr12 31622418 31622440 -112164015 + AT_rich Low_complexity Low_complexity 1 22 0 1460 185 40 25 chr12 31622982 31623307 -112163148 + MLT1A2 LTR MaLR 45 374 0 186 176 0 0 chr12 31624879 31624930 -112161525 + (CA)n Simple_repeat Simple_repeat 2 52 0 364 280 24 0 chr12 31624949 31625074 -112161381 + (CA)n Simple_repeat Simple_repeat 1 128 0 354 349 6 0 chr12 31625123 31625298 -112161157 + (CA)n Simple_repeat Simple_repeat 1 176 0 25 0 0 0 chr12 31625463 31625488 -112160967 + AT_rich Low_complexity Low_complexity 1 25 0 197 218 127 0 chr12 31626092 31626147 -112160308 + L2 LINE L2 2994 3055 -217 195 335 126 16 chr12 31626962 31627144 -112159311 - L2 LINE L2 -1729 1585 1384 204 329 26 0 chr12 31627397 31627473 -112158982 + L3 LINE CR1 1476 1553 -24 22 56 0 0 chr12 31627728 31627764 -112158691 + AT_rich Low_complexity Low_complexity 1 36 0 1495 236 76 39 chr12 31628188 31628858 -112157597 + L1MC5 LINE L1 7232 7926 -35 957 185 0 0 chr12 31629115 31629293 -112157162 + MLT2B2 LTR ERVL 6 183 -332 999 190 10 77 chr12 31629405 31629817 -112156638 + MLT2B2 LTR ERVL 186 515 0 195 42 0 0 chr12 31630009 31630033 -112156422 + (T)n Simple_repeat Simple_repeat 1 24 0 289 200 45 2 chr12 31631081 31631147 -112155308 + AluSq/x SINE Alu 47 107 -195 374 232 65 77 chr12 31631438 31631593 -112154862 - MIR3 SINE MIR -40 168 16 190 194 0 0 chr12 31632403 31632439 -112154016 + MER5A DNA MER1_type 55 90 -99 556 179 229 0 chr12 31632446 31632586 -112153869 + MER5A DNA MER1_type 18 189 0 282 313 54 45 chr12 31632721 31632833 -112153622 - L2 LINE L2 -14 3258 3146 1648 177 31 6 chr12 31632841 31633163 -112153292 - MER58B DNA MER1_type 0 341 12 839 304 84 56 chr12 31633866 31634428 -112152027 - L2 LINE L2 -267 3005 2423 243 242 34 0 chr12 31635156 31635221 -112151234 + MIR SINE MIR 80 140 -68 2047 133 10 0 chr12 31636486 31636779 -112149676 - AluSc SINE Alu -11 298 3 5319 80 104 4 chr12 31637024 31637773 -112148682 - LTR12 LTR ERV1 0 826 3 2511 88 95 2 chr12 31637773 31638172 -112148283 + LTR7 LTR ERV1 13 448 -2 12453 206 83 68 chr12 31638174 31643245 -112143210 + HERVH LTR ERV1 1 5149 -2564 1291 124 18 5 chr12 31643246 31643463 -112142992 + HERVH LTR ERV1 5600 5819 -1894 2180 87 46 44 chr12 31643463 31643852 -112142603 + HERVH LTR ERV1 7324 7713 0 3003 87 4 32 chr12 31643852 31644313 -112142142 + LTR7 LTR ERV1 1 448 -2 1608 176 13 10 chr12 31644482 31644783 -112141672 - AluJo SINE Alu -9 303 2 1848 186 59 15 chr12 31645179 31645659 -112140796 - L1MA10 LINE L1 -9 6282 5797 1546 186 0 19 chr12 31645953 31646222 -112140233 - AluJo SINE Alu -10 302 39 290 175 79 16 chr12 31646277 31646340 -112140115 - MER103 DNA DNA -96 70 4 26 82 0 0 chr12 31646761 31646822 -112139633 + AT_rich Low_complexity Low_complexity 1 61 0 1949 107 8 0 chr12 31648167 31648429 -112138026 - AluSc SINE Alu -2 307 44 26 30 0 0 chr12 31648474 31648507 -112137948 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr12 31649561 31649589 -112136866 + AT_rich Low_complexity Low_complexity 1 28 0 2090 214 50 53 chr12 31650200 31650568 -112135887 - MLT1E LTR MaLR -8 585 218 1836 100 0 38 chr12 31650568 31650705 -112135750 + L1MA1 LINE L1 6018 6140 -162 2515 63 0 0 chr12 31650705 31651004 -112135451 + AluY SINE Alu 1 299 -12 1836 100 0 38 chr12 31651004 31651156 -112135299 + L1MA1 LINE L1 6140 6296 -6 2090 214 50 53 chr12 31651156 31651370 -112135085 - MLT1E LTR MaLR -375 218 5 3956 259 102 32 chr12 31652337 31654234 -112132221 + L2 LINE L2 1206 3313 0 405 341 14 27 chr12 31654718 31655011 -112131444 - ERVL LTR ERVL -4563 1201 913 2328 57 0 0 chr12 31655117 31655396 -112131059 - AluY SINE Alu -32 279 1 6073 95 14 0 chr12 31655398 31656467 -112129988 - L1PA13 LINE L1 -5 6158 5100 3907 129 39 11 chr12 31656462 31657163 -112129292 - L1PA16 LINE L1 -279 6590 5875 20494 87 10 2 chr12 31657201 31660665 -112125790 - L1PA7 LINE L1 -16 6453 2966 8219 114 21 16 chr12 31660667 31661907 -112124548 - L1PA7 LINE L1 -5211 1250 5 2153 205 47 2 chr12 31661914 31662406 -112124049 - L1PA16 LINE L1 -958 5891 5378 * 15818 157 13 19 chr12 31662384 31662977 -112123478 - L1PA16 LINE L1 -4283 2566 1971 2344 122 0 0 chr12 31662977 31663289 -112123166 - AluSx SINE Alu 0 312 1 15818 157 13 19 chr12 31663289 31665274 -112121181 - L1PA16 LINE L1 -4878 1971 2 732 180 90 66 chr12 31665277 31665521 -112120934 - L1M4c LINE L1 -4856 1528 1279 1994 195 25 42 chr12 31665765 31666330 -112120125 + pTR5 LTR ERV1 790 1344 -1094 4647 123 15 126 chr12 31666346 31667270 -112119185 + LTR12 LTR ERV1 5 826 0 1777 271 96 38 chr12 31667272 31668256 -112118199 + L1 LINE L1 2678 3718 -2428 433 115 44 133 chr12 31668668 31668781 -112117674 - MER53 DNA DNA -82 107 5 1630 233 45 31 chr12 31669611 31670100 -112116355 + L2 LINE L2 1557 2052 -1262 510 250 85 94 chr12 31670129 31670601 -112115854 - MLT1H LTR MaLR -19 530 1 655 176 17 25 chr12 31670660 31670779 -112115676 - FLAM_A SINE Alu -12 121 4 2547 260 104 18 chr12 31670791 31671847 -112114608 + L2 LINE L2 2074 3220 -93 331 277 75 75 chr12 31671942 31672224 -112114231 - MLT1J LTR MaLR 0 511 230 2131 150 0 0 chr12 31672518 31672824 -112113631 + AluSx SINE Alu 1 306 -6 979 219 44 133 chr12 31673201 31673721 -112112734 + L1MC4 LINE L1 7138 7611 -431 4026 210 32 48 chr12 31673721 31673983 -112112472 + Charlie1a DNA MER1_type 1 266 -2495 3066 90 7 48 chr12 31673983 31674438 -112112017 - L1MA2 LINE L1 0 6304 5869 4026 210 32 48 chr12 31674438 31675173 -112111282 + Charlie1a DNA MER1_type 266 982 -473 232 263 32 63 chr12 31675184 31675279 -112111176 - MIR SINE MIR -7 255 164 1654 177 35 7 chr12 31677242 31677530 -112108925 + AluJb SINE Alu 1 296 -16 767 233 20 0 chr12 31677607 31677757 -112108698 - MER58B DNA MER1_type 0 341 189 2114 118 0 16 chr12 31677765 31678070 -112108385 - AluSx SINE Alu -7 305 6 39770 40 0 2 chr12 31678185 31682940 -112103515 - L1P LINE L1 -1400 4746 1 225 295 26 13 chr12 31683786 31683864 -112102591 - MIR SINE MIR -112 150 72 198 184 41 41 chr12 31684492 31684541 -112101914 + MIR3 SINE MIR 7 55 -153 714 264 62 0 chr12 31684566 31684759 -112101696 - MIR SINE MIR -15 247 43 952 310 61 22 chr12 31684774 31685181 -112101274 + LTR16A LTR ERVL 18 440 -10 4481 164 28 19 chr12 31685317 31686096 -112100359 - MER21B LTR ERV1 -77 786 1 237 261 127 61 chr12 31686190 31686355 -112100100 + L2 LINE L2 1865 2040 -1274 506 335 74 54 chr12 31686359 31686567 -112099888 + L2 LINE L2 2205 2408 -906 1799 157 30 13 chr12 31686567 31686872 -112099583 - AluJb SINE Alu -2 310 1 506 335 74 54 chr12 31686872 31687179 -112099276 + L2 LINE L2 2408 2730 -584 2280 105 3 0 chr12 31687204 31687509 -112098946 - AluSp SINE Alu -7 306 1 294 361 56 0 chr12 31687543 31687651 -112098804 + MIR SINE MIR 2 115 -147 303 268 21 10 chr12 31687706 31687803 -112098652 + MLT1J1 LTR MaLR 54 151 -295 265 121 32 32 chr12 31688142 31688266 -112098189 + (CCCA)n Simple_repeat Simple_repeat 3 126 0 240 149 11 35 chr12 31688309 31688396 -112098059 + C-rich Low_complexity Low_complexity 6 90 0 196 83 0 0 chr12 31688572 31688596 -112097859 + (A)n Simple_repeat Simple_repeat 1 24 0 249 293 0 0 chr12 31688596 31688637 -112097818 + C-rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr12 31689165 31689188 -112097267 + AT_rich Low_complexity Low_complexity 1 23 0 282 262 106 35 chr12 31692556 31692697 -112093758 + L1ME LINE L1 5673 5823 -298 25 51 0 0 chr12 31692710 31692749 -112093706 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 31693713 31693734 -112092721 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr12 31693761 31693793 -112092662 + AT_rich Low_complexity Low_complexity 1 32 0 3341 160 71 6 chr12 31694110 31694530 -112091925 + L1MA7 LINE L1 5620 6096 -195 225 0 0 0 chr12 31694530 31694555 -112091900 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3341 160 71 6 chr12 31694555 31694765 -112091690 + L1MA7 LINE L1 6096 6291 0 216 0 0 0 chr12 31695323 31695347 -112091108 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2783 88 11 0 chr12 31698381 31698732 -112087723 - THE1A LTR MaLR 0 355 1 2627 151 46 12 chr12 31699121 31699533 -112086922 + MSTA LTR MaLR 3 428 0 2603 190 105 70 chr12 31700601 31701507 -112084948 - L1ME2 LINE L1 -3 6161 5188 552 194 15 8 chr12 31701883 31702017 -112084438 - L1ME2 LINE L1 -945 5201 5067 2293 160 29 75 chr12 31702020 31702501 -112083954 + MLT1C LTR MaLR 1 459 -8 184 302 50 126 chr12 31703183 31703354 -112083101 + L2 LINE L2 2933 3063 -209 2667 89 100 8 chr12 31703354 31703745 -112082710 - MSTA LTR MaLR 0 428 2 184 302 50 126 chr12 31703745 31703937 -112082518 + L2 LINE L2 3063 3268 -4 2122 175 5 56 chr12 31704011 31704422 -112082033 - MLT1B LTR MaLR 0 390 1 185 308 77 0 chr12 31704594 31704659 -112081796 - MIR SINE MIR -136 126 57 438 238 229 51 chr12 31704764 31704978 -112081477 - MIR SINE MIR -3 259 8 190 277 36 48 chr12 31704998 31705081 -112081374 - MIR SINE MIR -153 109 28 252 188 0 0 chr12 31706240 31706288 -112080167 + L2 LINE L2 3261 3308 -5 4607 159 33 11 chr12 31706332 31707174 -112079281 - L1MB4 LINE L1 0 6180 5320 1005 228 149 29 chr12 31707277 31707542 -112078913 + L2 LINE L2 2668 2900 -413 2963 195 2 6 chr12 31707542 31708030 -112078425 - MER66B LTR ERV1 0 486 1 1005 228 149 29 chr12 31708030 31708339 -112078116 + L2 LINE L2 2900 3313 0 260 303 50 5 chr12 31708566 31708733 -112077722 - L1ME LINE L1 -458 5712 5534 274 304 40 36 chr12 31708855 31709131 -112077324 + HAL1b LINE L1 661 937 -411 2286 110 0 0 chr12 31709267 31709566 -112076889 - AluSc SINE Alu -10 299 1 1106 172 0 0 chr12 31709601 31709775 -112076680 + AluJb SINE Alu 137 310 -2 366 204 0 0 chr12 31709788 31709876 -112076579 + GA-rich Low_complexity Low_complexity 3 90 0 1288 97 31 35 chr12 31710100 31710328 -112076127 + L1MA10 LINE L1 6101 6327 -7 404 336 58 41 chr12 31710331 31710724 -112075731 + L1M4 LINE L1 2235 2634 -3512 951 196 0 6 chr12 31711534 31711692 -112074763 + FRAM SINE Alu 1 152 -24 5028 72 37 7 chr12 31712302 31713005 -112073450 - L1PA11 LINE L1 0 6174 5451 699 221 22 54 chr12 31713957 31714180 -112072275 - L1ME1 LINE L1 -50 6116 5941 2476 165 24 0 chr12 31714300 31714718 -112071737 - MSTA LTR MaLR 0 428 1 744 206 0 21 chr12 31714750 31714891 -112071564 - FRAM SINE Alu -19 157 20 4060 202 42 31 chr12 31714922 31715028 -112071427 - L1MB7 LINE L1 -54 6130 6027 2343 101 0 0 chr12 31715028 31715336 -112071119 + AluSx SINE Alu 1 308 -4 4060 202 42 31 chr12 31715336 31716353 -112070102 - L1MB7 LINE L1 -157 6027 5023 2283 68 10 3 chr12 31716353 31716647 -112069808 + AluY SINE Alu 1 296 -15 4060 202 42 31 chr12 31716647 31717476 -112068979 - L1MB7 LINE L1 -1161 5023 4204 369 0 0 0 chr12 31717476 31717517 -112068938 + (TG)n Simple_repeat Simple_repeat 1 41 0 2091 94 14 4 chr12 31717517 31717793 -112068662 - AluSx SINE Alu -33 279 1 4060 202 42 31 chr12 31717793 31717882 -112068573 - L1MB7 LINE L1 -1979 4205 4066 1829 183 36 22 chr12 31717893 31718253 -112068202 - MLT1A1 LTR MaLR 0 365 1 324 0 0 0 chr12 31718264 31718300 -112068155 + (TG)n Simple_repeat Simple_repeat 2 37 0 986 185 11 17 chr12 31718306 31718484 -112067971 - AluJo SINE Alu -30 282 106 366 297 8 23 chr12 31718849 31718977 -112067478 - AluJo SINE Alu -176 126 1 321 269 32 0 chr12 31719814 31719907 -112066548 - MIR SINE MIR -64 144 49 384 320 8 8 chr12 31720673 31720795 -112065660 - MER5B DNA MER1_type -6 172 51 551 155 0 10 chr12 31720797 31720894 -112065561 - FLAM_A SINE Alu -15 127 32 349 130 0 0 chr12 31720896 31720950 -112065505 - MER5B DNA MER1_type -123 55 2 395 287 19 101 chr12 31721165 31721343 -112065112 + MIR SINE MIR 2 152 -110 2232 133 2 63 chr12 31721343 31721758 -112064697 - MLT1B LTR MaLR 0 390 1 395 287 19 101 chr12 31721758 31721847 -112064608 + MIR SINE MIR 152 247 -15 512 180 101 36 chr12 31721847 31721986 -112064469 + L1ME2 LINE L1 6015 6162 -2 24 32 0 0 chr12 31722402 31722433 -112064022 + AT_rich Low_complexity Low_complexity 1 31 0 205 256 0 0 chr12 31722697 31722740 -112063715 + (CATA)n Simple_repeat Simple_repeat 2 44 0 248 217 0 0 chr12 31722852 31722912 -112063543 + L1MA8 LINE L1 6060 6119 -172 1956 151 0 3 chr12 31722932 31723223 -112063232 + AluJo SINE Alu 6 295 -17 2378 72 0 7 chr12 31723271 31723577 -112062878 + AluY SINE Alu 1 304 -7 231 262 16 16 chr12 31723647 31723708 -112062747 + L2 LINE L2 3208 3268 -4 1022 188 24 0 chr12 31723816 31724029 -112062426 - MER57A LTR ERV1 -6 397 180 745 273 60 60 chr12 31724158 31724744 -112061711 + PABL_B LTR ERV1 82 667 0 815 129 122 0 chr12 31724748 31724895 -112061560 - MER57A LTR ERV1 -231 172 8 1497 128 23 0 chr12 31724897 31725155 -112061300 + L1MA6 LINE L1 6037 6300 0 25932 34 2 0 chr12 31725181 31729098 -112057357 - L1PA4 LINE L1 -7 6148 2227 1371 202 48 48 chr12 31730241 31730617 -112055838 - MLT1B LTR MaLR 0 390 15 2485 84 0 0 chr12 31731940 31732249 -112054206 + AluY SINE Alu 1 309 -2 193 290 0 16 chr12 31732283 31732345 -112054110 + L2 LINE L2 3249 3309 -4 333 305 73 33 chr12 31732380 31732531 -112053924 + MIR3 SINE MIR 21 177 -31 1982 162 59 0 chr12 31732607 31732995 -112053460 + L1MA4 LINE L1 5882 6292 -8 2508 81 0 17 chr12 31733677 31734025 -112052430 + L1PA8 LINE L1 5828 6169 -3 548 140 0 0 chr12 31734193 31734286 -112052169 + L1PA5 LINE L1 6044 6136 -18 1327 323 42 37 chr12 31734449 31735210 -112051245 - L3 LINE CR1 -378 1199 435 383 20 39 0 chr12 31735560 31735611 -112050844 + (TTATA)n Simple_repeat Simple_repeat 5 57 0 474 188 58 43 chr12 31735789 31735927 -112050528 - L1ME LINE L1 -452 5669 5530 213 347 121 0 chr12 31735973 31736097 -112050358 - L2 LINE L2 -1019 2295 2157 181 241 193 48 chr12 31736101 31736184 -112050271 - MIR3 SINE MIR -26 182 88 189 0 0 0 chr12 31737162 31737183 -112049272 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 5226 134 37 32 chr12 31738358 31739276 -112047179 + MER49 LTR ERV1 1 923 0 2525 65 0 0 chr12 31739963 31740273 -112046182 + AluY SINE Alu 1 310 -1 261 156 0 0 chr12 31741309 31741354 -112045101 - Charlie8 DNA MER1_type -2252 165 121 2530 144 56 9 chr12 31741872 31742080 -112044375 - L1MA9 LINE L1 0 6312 6115 7246 121 43 7 chr12 31742080 31743268 -112043187 - Tigger3b DNA MER2_type 0 1231 1 2530 144 56 9 chr12 31743268 31743524 -112042931 - L1MA9 LINE L1 -197 6115 5826 2165 132 0 3 chr12 31743525 31743836 -112042619 + AluSg SINE Alu 1 310 0 228 216 0 0 chr12 31743836 31743887 -112042568 - L1MA9 LINE L1 -378 5793 5743 763 216 0 0 chr12 31743896 31744035 -112042420 + FRAM SINE Alu 18 156 -20 1812 131 19 0 chr12 31744052 31744364 -112042091 - L1MA9 LINE L1 -563 5749 5432 4962 106 31 1 chr12 31744384 31745035 -112041420 - L1PB1 LINE L1 0 6867 6188 189 0 0 0 chr12 31745035 31745056 -112041399 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4962 106 31 1 chr12 31745056 31745180 -112041275 - L1PB1 LINE L1 -679 6188 6069 1492 104 0 0 chr12 31745182 31745383 -112041072 - AluY SINE Alu 0 311 111 903 56 0 0 chr12 31745478 31745585 -112040870 - AluY SINE Alu -204 107 1 9159 211 15 10 chr12 31745585 31747847 -112038608 - L1PB1 LINE L1 -779 6083 3811 437 200 0 0 chr12 31747862 31747947 -112038508 - L1PB1 LINE L1 -6073 790 706 * 11368 184 96 20 chr12 31747937 31751751 -112034704 - L1PBa LINE L1 -2422 4440 302 2366 102 0 0 chr12 31751751 31752054 -112034401 - AluSg SINE Alu -7 303 1 11368 184 96 20 chr12 31752054 31752259 -112034196 - L1PBa LINE L1 -6560 302 114 21 0 0 0 chr12 31752319 31752340 -112034115 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr12 31752400 31752435 -112034020 + AT_rich Low_complexity Low_complexity 1 35 0 248 324 29 19 chr12 31753296 31753401 -112033054 + MIR SINE MIR 37 142 -66 2283 151 50 24 chr12 31755135 31755558 -112030897 + Tigger2a DNA MER2_type 1 434 0 354 98 0 0 chr12 31755832 31755883 -112030572 + (CA)n Simple_repeat Simple_repeat 1 51 0 251 97 48 16 chr12 31755977 31756039 -112030416 + (TA)n Simple_repeat Simple_repeat 1 64 0 246 189 18 117 chr12 31756774 31756885 -112029570 - L2 LINE L2 -77 3236 3137 187 369 39 39 chr12 31758243 31758346 -112028109 + L2 LINE L2 3137 3239 -33 202 189 19 19 chr12 31758689 31758742 -112027713 + (TA)n Simple_repeat Simple_repeat 2 54 0 997 238 30 5 chr12 31758835 31759081 -112027374 - MIR SINE MIR 0 262 14 1880 146 3 13 chr12 31760165 31760466 -112025989 + AluSx SINE Alu 1 298 -14 1890 153 10 0 chr12 31760606 31760901 -112025554 + AluSx SINE Alu 1 298 -14 629 235 159 39 chr12 31760904 31761295 -112025160 + MLT1H LTR MaLR 79 527 -15 2422 74 7 0 chr12 31761738 31762047 -112024408 - AluY SINE Alu 0 311 1 546 231 34 62 chr12 31762853 31763016 -112023439 + MLT1H LTR MaLR 1 80 -450 2080 123 14 3 chr12 31763016 31763309 -112023146 + AluJb SINE Alu 1 296 -16 546 231 34 62 chr12 31763309 31763376 -112023079 + MLT1H LTR MaLR 80 147 -383 4569 225 71 16 chr12 31763514 31764844 -112021611 + L1 LINE L1 2121 3524 -2622 1373 211 4 7 chr12 31764961 31765231 -112021224 + AluJo SINE Alu 6 274 -38 2353 11 7 0 chr12 31765606 31765878 -112020577 + L1PA2 LINE L1 5881 6154 -1 412 220 66 0 chr12 31765946 31766037 -112020418 + Tigger3b DNA MER2_type 6 102 -1129 * 4666 100 144 13 chr12 31766036 31766858 -112019597 + Tigger3b DNA MER2_type 279 1207 -24 399 206 21 21 chr12 31767476 31767573 -112018882 - pTR5 LTR ERV1 -1599 839 743 11045 174 96 14 chr12 31767574 31770244 -112016211 - L1M4 LINE L1 -3473 2909 19 990 203 100 80 chr12 31770268 31770617 -112015838 - MER76 LTR ERV -2 686 331 1875 180 0 0 chr12 31771097 31771391 -112015064 + AluJb SINE Alu 1 294 -18 4912 147 23 50 chr12 31771984 31773073 -112013382 - L1MB3 LINE L1 -1 6182 5122 2475 90 20 0 chr12 31773088 31773434 -112013021 - L1PA13 LINE L1 -17 6146 5794 301 314 122 21 chr12 31774504 31774692 -112011763 - L1ME LINE L1 -282 5839 5633 22 35 0 0 chr12 31775039 31775068 -112011387 + AT_rich Low_complexity Low_complexity 1 29 0 468 293 64 6 chr12 31775072 31775229 -112011226 + HAL1 LINE L1 4 169 -2338 705 187 64 41 chr12 31775307 31775478 -112010977 + MIR SINE MIR 1 175 -87 498 224 153 90 chr12 31775594 31775817 -112010638 + MIR SINE MIR 26 262 0 187 298 133 46 chr12 31776062 31776213 -112010242 - MIR3 SINE MIR -22 186 23 23 33 0 0 chr12 31776665 31776695 -112009760 + AT_rich Low_complexity Low_complexity 1 30 0 571 233 19 92 chr12 31777342 31777548 -112008907 + L2 LINE L2 3119 3309 -4 2211 105 6 13 chr12 31778052 31778365 -112008090 + AluSx SINE Alu 1 311 -1 545 174 181 7 chr12 31778384 31778522 -112007933 - L1M4b LINE L1 -5907 952 791 1433 207 10 21 chr12 31778622 31778912 -112007543 - AluJo SINE Alu -17 295 9 1608 170 26 42 chr12 31779188 31779538 -112006917 - MSTB2 LTR MaLR -114 319 1 249 183 33 17 chr12 31779656 31779716 -112006739 - L1MC5 LINE L1 -593 7368 7308 246 143 24 24 chr12 31779717 31779759 -112006696 - Alu SINE Alu -39 260 219 846 198 172 104 chr12 31779824 31780306 -112006149 - L1MD3 LINE L1 -788 7173 6671 227 129 29 29 chr12 31780308 31780378 -112006077 + (TA)n Simple_repeat Simple_repeat 2 71 0 1037 199 5 0 chr12 31780565 31780761 -112005694 - L1PA16 LINE L1 -16 6150 5954 2198 100 0 23 chr12 31780784 31781093 -112005362 - AluSq SINE Alu -11 302 1 319 278 101 98 chr12 31781094 31781440 -112005015 - L1MC4a LINE L1 -1227 6581 6235 435 103 0 0 chr12 31781448 31781516 -112004939 + Alu SINE Alu 244 311 0 361 262 218 25 chr12 31781539 31781814 -112004641 - L1MC4a LINE L1 -1651 6157 5830 238 216 144 0 chr12 31781930 31782041 -112004414 + L1MB8 LINE L1 1500 1626 -5233 2235 108 3 0 chr12 31782041 31782337 -112004118 + AluSx SINE Alu 1 297 -15 6422 215 72 11 chr12 31782383 31782817 -112003638 + L1MB8 LINE L1 3846 4252 -2705 200 33 0 33 chr12 31782817 31782847 -112003608 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6422 215 72 11 chr12 31782847 31784363 -112002092 + L1MB8 LINE L1 4252 5914 -1043 1051 145 58 4 chr12 31784365 31784574 -112001881 + AluJb SINE Alu 1 304 -8 3342 167 140 12 chr12 31784575 31785521 -112000934 + L1MB8 LINE L1 5911 6984 -5 2350 58 0 17 chr12 31786824 31787117 -111999338 - AluY SINE Alu -23 288 1 29 0 0 0 chr12 31787411 31787440 -111999015 + AT_rich Low_complexity Low_complexity 1 29 0 1512 101 48 0 chr12 31788894 31789121 -111997334 + L1MA5A LINE L1 6038 6275 -22 623 210 108 45 chr12 31789466 31789594 -111996861 - MER58 DNA MER1_type -154 187 44 2397 89 3 0 chr12 31789594 31789896 -111996559 + AluSp SINE Alu 1 303 -10 623 210 108 45 chr12 31789896 31789943 -111996512 - MER58 DNA MER1_type -297 44 1 2242 103 13 0 chr12 31790635 31790936 -111995519 + AluSq SINE Alu 1 305 -8 2055 191 30 74 chr12 31792050 31792578 -111993877 + MLT1D LTR MaLR 1 505 0 443 255 43 35 chr12 31792957 31793098 -111993357 + LTR67 LTR ERVL 412 553 -4 1328 262 136 16 chr12 31793164 31793648 -111992807 + MLT1F LTR MaLR 1 542 0 315 278 55 7 chr12 31793894 31794078 -111992377 - MLT1G1 LTR MaLR 0 595 354 7470 32 1 1 chr12 31794802 31795827 -111990628 + L1PA4 LINE L1 5128 6152 -3 27 0 0 0 chr12 31795827 31795854 -111990601 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr12 31795893 31795913 -111990542 + (A)n Simple_repeat Simple_repeat 1 20 0 339 364 64 18 chr12 31795933 31796326 -111990129 - MLT1C LTR MaLR -8 459 49 577 246 72 58 chr12 31796609 31796885 -111989570 - L2 LINE L2 -129 3184 2905 3092 95 51 0 chr12 31796970 31797401 -111989054 - MLT2A2 LTR ERVL 0 453 1 2785 126 7 30 chr12 31797415 31797851 -111988604 + MSTB LTR MaLR 1 426 0 518 247 81 23 chr12 31797888 31798062 -111988393 + MER5A DNA MER1_type 4 187 -2 1826 45 0 18 chr12 31799064 31799284 -111987171 - AluY SINE Alu -10 301 86 203 162 0 27 chr12 31799602 31799639 -111986816 + L3 LINE CR1 1443 1478 -99 1998 126 0 68 chr12 31799704 31800030 -111986425 - AluSx SINE Alu -7 305 2 370 212 12 0 chr12 31800101 31800186 -111986269 + L1 LINE L1 5057 5142 -1004 * 3494 94 5 7 chr12 31800154 31800727 -111985728 + L1P4 LINE L1 5168 5741 -422 306 276 48 35 chr12 31801784 31801929 -111984526 - L1ME3A LINE L1 -203 5967 5821 1985 128 21 0 chr12 31801938 31802226 -111984229 - AluSx SINE Alu -16 296 3 1836 125 0 7 chr12 31802230 31802502 -111983953 - AluSx SINE Alu -9 303 34 18474 155 13 9 chr12 31802502 31802798 -111983657 + L1P LINE L1 2093 2386 -3760 2346 107 0 3 chr12 31802798 31803107 -111983348 + AluY SINE Alu 1 308 -3 18474 155 13 9 chr12 31803107 31806108 -111980347 + L1P LINE L1 2386 5403 -743 1052 112 0 0 chr12 31806108 31806251 -111980204 + LTR8 LTR ERV1 548 690 -1 6303 106 36 3 chr12 31806252 31807140 -111979315 + HUERS-P1 LTR ERV1 1 917 -5346 2343 116 9 3 chr12 31807144 31807479 -111978976 + HUERS-P1 LTR ERV1 1427 1763 -4500 869 263 55 119 chr12 31807589 31808118 -111978337 + MLT1G LTR MaLR 96 574 -16 207 220 0 0 chr12 31808168 31808218 -111978237 + (CA)n Simple_repeat Simple_repeat 1 50 0 1759 175 0 0 chr12 31808617 31808902 -111977553 + AluJo SINE Alu 1 285 -27 23 33 0 0 chr12 31808902 31808932 -111977523 + AT_rich Low_complexity Low_complexity 1 30 0 371 278 31 0 chr12 31809458 31809555 -111976900 + MIR SINE MIR 57 156 -106 546 292 42 54 chr12 31809558 31809598 -111976857 - MIR SINE MIR -16 246 207 2150 104 24 3 chr12 31809598 31809895 -111976560 - AluY SINE Alu -8 303 1 546 292 42 54 chr12 31809895 31810094 -111976361 - MIR SINE MIR -55 207 10 205 194 45 45 chr12 31810102 31810169 -111976286 + MIR SINE MIR 159 225 -37 235 160 11 43 chr12 31811108 31811202 -111975253 + GA-rich Low_complexity Low_complexity 2 92 0 1831 163 89 13 chr12 31811544 31812004 -111974451 - Charlie1 DNA MER1_type 0 2761 2267 8238 130 10 8 chr12 31812121 31813435 -111973020 - THE1A-int LTR MaLR -263 1317 1 2401 110 32 3 chr12 31813435 31813780 -111972675 - THE1A LTR MaLR 0 355 1 6190 214 25 22 chr12 31813784 31815439 -111971016 - L1 LINE L1 -2286 3860 2202 190 284 63 21 chr12 31815873 31815968 -111970487 + MIR SINE MIR 110 208 -54 471 232 36 0 chr12 31816048 31816160 -111970295 - MIR SINE MIR -63 199 84 3424 80 0 0 chr12 31816316 31816768 -111969687 + L1PA5 LINE L1 5701 6152 -2 199 276 11 81 chr12 31817094 31817121 -111969334 - MIR3 SINE MIR -30 178 151 1680 135 4 12 chr12 31817121 31817380 -111969075 + AluSq SINE Alu 40 296 -17 199 276 11 81 chr12 31817380 31817439 -111969016 - MIR3 SINE MIR -57 151 98 506 278 183 6 chr12 31817517 31817697 -111968758 + MIR SINE MIR 23 234 -28 747 109 0 0 chr12 31818190 31818309 -111968146 + L1MA9 LINE L1 6189 6307 -5 1715 221 88 23 chr12 31820393 31820942 -111965513 - MER77 LTR ERV1 -8 597 38 1072 294 72 6 chr12 31821265 31821622 -111964833 - L1M4 LINE L1 -820 5326 4994 180 0 0 0 chr12 31821622 31821642 -111964813 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1072 294 72 6 chr12 31821642 31821923 -111964532 - L1M4 LINE L1 -1152 4994 4646 2684 226 37 19 chr12 31821931 31822655 -111963800 - L1MC3 LINE L1 -17 7768 7032 1877 226 31 2 chr12 31822694 31823150 -111963305 - L1MC3 LINE L1 -687 7098 6630 240 35 0 0 chr12 31823154 31823183 -111963272 + (TG)n Simple_repeat Simple_repeat 2 30 0 1078 249 96 38 chr12 31823189 31823555 -111962900 - MSTD LTR MaLR -9 387 1 400 287 9 43 chr12 31823683 31823798 -111962657 - MIR SINE MIR -61 147 37 316 190 66 33 chr12 31824595 31824716 -111961739 + L1MC5 LINE L1 7603 7727 -234 1449 173 0 60 chr12 31824732 31825016 -111961439 + AluSx SINE Alu 37 303 -9 368 275 10 62 chr12 31825017 31825210 -111961245 + L1MC5 LINE L1 7716 7898 -63 2205 109 0 10 chr12 31825534 31825837 -111960618 - AluSg SINE Alu -10 300 1 2750 104 10 2 chr12 31825838 31826252 -111960203 - MSTA-int LTR MaLR -1157 423 7 3630 196 11 16 chr12 31826383 31826457 -111959998 - L1 LINE L1 -1444 4702 4629 2220 125 3 0 chr12 31826457 31826768 -111959687 - AluSx SINE Alu 0 312 1 3630 196 11 16 chr12 31826768 31827540 -111958915 - L1 LINE L1 -1517 4629 3861 63 67 0 0 chr12 31827630 31827749 -111958706 + GC_rich Low_complexity Low_complexity 1 119 0 211 170 38 19 chr12 31827801 31827907 -111958548 + C-rich Low_complexity Low_complexity 1 108 0 180 0 0 0 chr12 31828158 31828178 -111958277 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 2203 154 70 5 chr12 31829015 31829417 -111957038 - MSTA LTR MaLR 0 428 1 235 29 0 29 chr12 31829683 31829717 -111956738 - L1P2 LINE L1 -585 5570 5538 * 4338 54 2 1 chr12 31829715 31830640 -111955815 + L1P2 LINE L1 4826 5750 -404 5838 155 30 12 chr12 31830868 31831864 -111954591 + L1M1 LINE L1 1081 2094 -5471 1212 119 44 19 chr12 31831883 31832192 -111954263 - L1M1 LINE L1 -743 5403 5156 1473 221 65 15 chr12 31832305 31832708 -111953747 - MER50 LTR ERV1 -311 423 1 474 167 133 0 chr12 31832708 31832828 -111953627 + L1MCa LINE L1 1423 1558 -4868 2275 110 0 3 chr12 31832862 31833170 -111953285 + AluSc SINE Alu 1 307 -2 204 216 0 0 chr12 31833185 31833223 -111953232 + (CATA)n Simple_repeat Simple_repeat 1 38 0 1340 190 123 46 chr12 31833252 31833603 -111952852 - MLT2B1 LTR ERVL -25 529 103 3257 246 31 12 chr12 31833610 31834739 -111951716 + L1MCa LINE L1 2388 3498 -2928 1023 171 42 73 chr12 31834809 31835385 -111951070 + MER4C LTR ERV1 1 430 -35 2102 138 0 0 chr12 31835570 31835866 -111950589 + AluSx SINE Alu 2 297 -15 597 259 18 29 chr12 31836206 31836376 -111950079 + MIR SINE MIR 21 188 -74 1244 73 28 0 chr12 31836439 31836617 -111949838 - L1PA8 LINE L1 -226 5928 5746 1692 81 0 0 chr12 31836617 31836830 -111949625 + L1PA8 LINE L1 5948 6170 -2 2066 130 30 3 chr12 31837820 31838119 -111948336 - AluSg SINE Alu -3 307 1 335 265 92 0 chr12 31839211 31839309 -111947146 - MIR SINE MIR -30 232 126 243 392 82 10 chr12 31840211 31840405 -111946050 + L2 LINE L2 2926 3133 -139 314 277 124 15 chr12 31840493 31840630 -111945825 - MIR SINE MIR -76 186 35 202 317 57 24 chr12 31840723 31840846 -111945609 + L2 LINE L2 3141 3267 -5 338 269 43 64 chr12 31841898 31842039 -111944416 - MIR3 SINE MIR -69 139 2 371 307 131 11 chr12 31842174 31842350 -111944105 - MIR SINE MIR -17 245 49 251 348 68 38 chr12 31842942 31843178 -111943277 - L2 LINE L2 -357 2957 2715 181 283 192 50 chr12 31843672 31843792 -111942663 - MIR SINE MIR -75 187 51 833 233 19 27 chr12 31844126 31844388 -111942067 - MIR SINE MIR 0 262 3 201 319 9 53 chr12 31844606 31844719 -111941736 - L2 LINE L2 -4 3309 3202 685 278 52 4 chr12 31844762 31845010 -111941445 - MIR SINE MIR 0 262 3 1082 216 42 86 chr12 31845326 31845757 -111940698 + L1ME1 LINE L1 5723 6134 -32 548 198 8 8 chr12 31845762 31845888 -111940567 + L1MC4a LINE L1 7569 7694 -114 475 218 113 85 chr12 31846335 31846583 -111939872 + L1MEc LINE L1 146 400 -5996 22 0 0 0 chr12 31846683 31846705 -111939750 + AT_rich Low_complexity Low_complexity 1 22 0 2042 158 27 32 chr12 31847385 31847938 -111938517 - MLT2A2 LTR ERVL 0 554 8 232 319 186 9 chr12 31848893 31849006 -111937449 + MER91A DNA MER1_type 42 174 -22 3478 234 63 35 chr12 31850269 31852406 -111934049 - L1ME2 LINE L1 -119 6045 3843 268 325 84 44 chr12 31852566 31852815 -111933640 + L2 LINE L2 1855 2113 -1201 479 201 58 7 chr12 31852946 31853100 -111933355 + L1M4 LINE L1 4322 4483 -1663 271 331 37 25 chr12 31854515 31854678 -111931777 + L2 LINE L2 2656 2820 -494 193 265 0 128 chr12 31854684 31854786 -111931669 + L2 LINE L2 3133 3221 -51 203 161 0 0 chr12 31854796 31854827 -111931628 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 192 152 0 0 chr12 31855822 31855855 -111930600 + CT-rich Low_complexity Low_complexity 2 34 0 195 100 0 0 chr12 31855868 31855898 -111930557 + (TTG)n Simple_repeat Simple_repeat 1 30 0 957 102 24 0 chr12 31856580 31856707 -111929748 + AluY SINE Alu 3 132 -179 234 321 100 14 chr12 31857269 31857298 -111929157 - L2 LINE L2 0 3272 3247 2305 75 0 0 chr12 31857298 31857602 -111928853 + AluY SINE Alu 3 306 0 234 321 100 14 chr12 31857602 31857711 -111928744 - L2 LINE L2 -25 3247 3121 189 256 0 0 chr12 31857988 31858027 -111928428 - MIR3 SINE MIR -28 180 142 478 254 33 103 chr12 31858789 31859002 -111927453 + MIR SINE MIR 31 228 -34 23 0 0 0 chr12 31860108 31860131 -111926324 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr12 31860619 31860644 -111925811 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 372 277 56 38 chr12 31861006 31861219 -111925236 + Charlie2 DNA MER1_type 107 323 -2459 448 194 164 67 chr12 31861268 31861536 -111924919 + Charlie2 DNA MER1_type 1903 2196 -666 923 243 74 8 chr12 31861589 31861832 -111924623 - MIR SINE MIR -3 259 1 464 226 87 20 chr12 31861872 31862124 -111924331 + Charlie2 DNA MER1_type 2356 2624 -238 856 178 6 6 chr12 31862225 31862382 -111924073 - FRAM SINE Alu -9 157 1 8798 232 43 37 chr12 31862403 31865030 -111921425 - L1ME1 LINE L1 -5 6230 3598 2200 142 52 32 chr12 31865030 31865473 -111920982 - L1MA8 LINE L1 -5 6286 5835 8798 232 43 37 chr12 31865473 31867035 -111919420 - L1ME1 LINE L1 -2637 3598 2047 204 247 91 26 chr12 31868638 31868715 -111917740 - MIR3 SINE MIR -25 183 102 182 345 18 0 chr12 31868808 31868863 -111917592 + MER5A DNA MER1_type 54 109 -80 495 287 208 10 chr12 31868950 31869152 -111917303 + MIR SINE MIR 21 262 0 2157 72 45 0 chr12 31869189 31869479 -111916976 - AluY SINE Alu -8 303 1 2424 183 38 35 chr12 31870160 31870478 -111915977 - MER90 LTR ERV1 0 614 292 2446 82 0 7 chr12 31870478 31870781 -111915674 + AluSp SINE Alu 1 301 -12 2424 183 38 35 chr12 31870781 31871042 -111915413 - MER90 LTR ERV1 -322 292 33 422 326 38 5 chr12 31871244 31871428 -111915027 + LTR33 LTR ERVL 3 192 -329 8125 104 129 30 chr12 31871560 31873105 -111913350 - pTR5 LTR ERV1 0 2438 741 396 154 29 0 chr12 31874338 31874442 -111912013 + (TA)n Simple_repeat Simple_repeat 2 108 0 2318 107 10 0 chr12 31874442 31874751 -111911704 - AluSq SINE Alu 0 313 2 2454 130 18 81 chr12 31874820 31875313 -111911142 - L1PA16 LINE L1 -2 6164 5703 2197 131 3 0 chr12 31875496 31875793 -111910662 - AluSx SINE Alu -14 298 1 195 42 0 0 chr12 31875916 31875940 -111910515 + (CAA)n Simple_repeat Simple_repeat 3 26 0 5633 35 0 0 chr12 31876777 31877439 -111909016 - L1PA5 LINE L1 0 6154 5493 337 230 16 8 chr12 31877732 31877825 -111908630 + MIR SINE MIR 100 192 -70 267 295 170 17 chr12 31878212 31878375 -111908080 + MIR SINE MIR 16 196 -66 474 273 63 0 chr12 31878471 31878614 -111907841 - MIR SINE MIR -74 188 37 572 276 140 19 chr12 31880566 31880780 -111905675 + MIR SINE MIR 15 254 -8 1299 181 47 34 chr12 31880788 31881109 -111905346 + MLT2C1 LTR ERVL 5 329 -68 1662 161 46 7 chr12 31881122 31881402 -111905053 + AluJb SINE Alu 1 291 -21 1038 138 69 0 chr12 31881413 31881602 -111904853 + MER82 DNA MER2_type 2 203 -450 3852 101 14 3 chr12 31881781 31882366 -111904089 - L1MA1 LINE L1 0 6302 5712 234 0 0 0 chr12 31882576 31882602 -111903853 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1921 201 30 15 chr12 31882749 31883151 -111903304 + MER82 DNA MER2_type 201 608 -45 1311 154 12 20 chr12 31883152 31883405 -111903050 + LTR1 LTR ERV1 1 251 -534 254 224 0 0 chr12 31883396 31883454 -111903001 + LTR1 LTR ERV1 201 258 -527 * 3179 129 10 48 chr12 31883444 31884048 -111902407 + LTR1 LTR ERV1 205 785 0 1376 307 118 6 chr12 31885278 31886348 -111900107 - L2 LINE L2 -6 3307 2098 869 228 70 21 chr12 31886352 31886780 -111899675 + MLT1F LTR MaLR 2 533 -9 1219 313 65 8 chr12 31886850 31887371 -111899084 - L2 LINE L2 -1945 1369 819 460 247 220 63 chr12 31887417 31887481 -111898974 - MIR SINE MIR -3 259 206 2144 144 0 0 chr12 31887481 31887787 -111898668 + AluSx SINE Alu 1 306 -6 460 247 220 63 chr12 31887787 31887945 -111898510 - MIR SINE MIR -56 206 2 33 0 0 0 chr12 31888986 31889019 -111897436 + AT_rich Low_complexity Low_complexity 1 33 0 345 331 30 24 chr12 31889796 31889965 -111896490 + MIR SINE MIR 28 197 -65 399 241 121 109 chr12 31890167 31890369 -111896086 - MIR SINE MIR 0 262 55 2412 94 0 0 chr12 31890369 31890667 -111895788 - AluSc SINE Alu -11 298 1 399 241 121 109 chr12 31890667 31890721 -111895734 - MIR SINE MIR -207 55 3 5424 152 10 12 chr12 31893423 31894979 -111891476 + L1PA15 LINE L1 4594 6144 -21 1088 87 13 0 chr12 31896156 31896305 -111890150 - AluSc SINE Alu -6 303 153 1190 51 38 25 chr12 31896702 31896859 -111889596 - AluSc SINE Alu -150 159 1 671 280 16 10 chr12 31896866 31897059 -111889396 - MIR SINE MIR -56 206 13 195 42 0 0 chr12 31897088 31897112 -111889343 + (A)n Simple_repeat Simple_repeat 1 24 0 2236 141 55 55 chr12 31897120 31897380 -111889075 + Tigger2a DNA MER2_type 1 263 -2445 1850 100 36 0 chr12 31897380 31897631 -111888824 + AluY SINE Alu 35 294 -17 2236 141 55 55 chr12 31897631 31897804 -111888651 + Tigger2a DNA MER2_type 262 434 0 43 0 0 0 chr12 31899395 31899438 -111887017 + AT_rich Low_complexity Low_complexity 1 43 0 1602 167 28 28 chr12 31899556 31899843 -111886612 - AluJo SINE Alu -24 288 2 825 264 147 85 chr12 31899859 31900851 -111885604 + L1MCc LINE L1 144 1197 -5226 2535 255 90 29 chr12 31900904 31902043 -111884412 + L1MCc LINE L1 1610 2842 -4099 2501 156 39 0 chr12 31902043 31902453 -111884002 + MSTB LTR MaLR 1 426 0 2535 255 90 29 chr12 31902453 31902940 -111883515 + L1MCc LINE L1 2842 3298 -3643 26 0 0 0 chr12 31903576 31903602 -111882853 + AT_rich Low_complexity Low_complexity 1 26 0 2142 121 116 10 chr12 31903716 31904103 -111882352 - MSTA LTR MaLR 0 428 1 327 247 11 34 chr12 31904542 31904631 -111881824 + L2 LINE L2 3227 3313 0 1371 194 20 78 chr12 31905289 31905686 -111880769 + MLT1A2 LTR MaLR 1 374 0 502 343 73 5 chr12 31905759 31905963 -111880492 - MIR SINE MIR -40 222 5 341 343 36 0 chr12 31906351 31906517 -111879938 + MIR SINE MIR 67 238 -24 365 354 82 5 chr12 31906576 31906771 -111879684 + L2 LINE L2 3101 3310 -3 670 98 20 0 chr12 31907159 31907261 -111879194 - L1MC1 LINE L1 -3 6330 6227 254 268 65 72 chr12 31907992 31908145 -111878310 - MARNA DNA Mariner -330 256 105 239 258 93 119 chr12 31908871 31908958 -111877497 + LTR16A LTR ERVL 16 104 -346 930 191 0 0 chr12 31908958 31909115 -111877340 + FRAM SINE Alu 1 157 -9 239 258 93 119 chr12 31909115 31909221 -111877234 + LTR16A LTR ERVL 104 204 -246 1673 271 54 59 chr12 31909312 31910038 -111876417 + ERVL LTR ERVL 3 724 -4272 1761 276 61 24 chr12 31910048 31911284 -111875171 + ERVL LTR ERVL 832 2224 -2772 2225 327 73 33 chr12 31911307 31911629 -111874826 + ERVL LTR ERVL 3742 4050 -946 2475 68 0 0 chr12 31911629 31911925 -111874530 + AluY SINE Alu 1 296 -15 2225 327 73 33 chr12 31911925 31912433 -111874022 + ERVL LTR ERVL 4050 4165 -831 1812 133 13 40 chr12 31912433 31912735 -111873720 - AluSg1 SINE Alu -15 294 1 2225 327 73 33 chr12 31912735 31913509 -111872946 + ERVL LTR ERVL 4165 4906 -90 2065 130 0 10 chr12 31913577 31913884 -111872571 + AluSg SINE Alu 1 304 -6 1299 236 65 40 chr12 31913911 31914310 -111872145 + LTR16A LTR ERVL 22 430 -20 1658 239 59 20 chr12 31916159 31916627 -111869828 - MLT1H LTR MaLR 0 549 19 21 36 0 0 chr12 31916688 31916716 -111869739 + AT_rich Low_complexity Low_complexity 1 28 0 21 95 0 0 chr12 31916883 31916946 -111869509 + AT_rich Low_complexity Low_complexity 1 63 0 549 216 62 56 chr12 31917269 31917431 -111869024 + MLT1G LTR MaLR 428 590 0 4377 131 174 20 chr12 31918775 31919773 -111866682 + pTR5 LTR ERV1 738 2024 -414 334 250 0 10 chr12 31919774 31919874 -111866581 + LTR30 LTR ERV1 544 642 -80 2878 13 0 0 chr12 31919891 31920202 -111866253 - AluYa5 SINE Alu 0 311 1 1534 104 5 5 chr12 31920206 31920427 -111866028 + pTR5 LTR ERV1 172 392 -2046 294 188 135 62 chr12 31920854 31920950 -111865505 + L2 LINE L2 3170 3272 0 2317 216 132 51 chr12 31921747 31922288 -111864167 - Charlie2a DNA MER1_type -1 2861 2365 1673 180 80 37 chr12 31922288 31922638 -111863817 - MLT1A1 LTR MaLR 0 365 1 2317 216 132 51 chr12 31922638 31922777 -111863678 - Charlie2a DNA MER1_type -497 2365 2239 3893 132 0 4 chr12 31922777 31923306 -111863149 + MER1A DNA MER1_type 1 527 0 2317 216 132 51 chr12 31923306 31923640 -111862815 - Charlie2a DNA MER1_type -623 2239 1764 325 138 0 35 chr12 31923681 31923739 -111862716 - LTR40a LTR ERVL -373 146 91 815 189 11 28 chr12 31923805 31923985 -111862470 - Charlie2a DNA MER1_type -1204 1658 1482 890 259 128 54 chr12 31924013 31924441 -111862014 - Charlie2a DNA MER1_type -2310 472 13 1894 89 67 0 chr12 31925199 31925468 -111860987 - L1MA2 LINE L1 0 6304 6018 609 111 32 56 chr12 31925473 31925599 -111860856 - L1MA2 LINE L1 -204 6100 5978 648 238 41 54 chr12 31927399 31927693 -111858762 + L1ME4a LINE L1 5580 5869 -252 295 212 122 108 chr12 31927810 31928088 -111858367 + L1ME4a LINE L1 5837 6118 -3 564 307 135 41 chr12 31928703 31929139 -111857316 + L3 LINE CR1 117 593 -984 246 62 0 0 chr12 31929266 31929298 -111857157 + (CA)n Simple_repeat Simple_repeat 2 33 0 661 328 71 35 chr12 31929300 31929763 -111856692 + L2 LINE L2 2450 2929 -385 1098 264 113 43 chr12 31929951 31930421 -111856034 - L2 LINE L2 -2 3311 2809 222 292 15 0 chr12 31930873 31930938 -111855517 + L2 LINE L2 3248 3313 0 253 319 11 11 chr12 31931273 31931367 -111855088 + GA-rich Low_complexity Low_complexity 3 96 0 226 189 0 0 chr12 31931745 31931782 -111854673 + MER53 DNA DNA 5 41 -148 1246 274 55 21 chr12 31933280 31933699 -111852756 + LTR16A LTR ERVL 16 448 -2 2378 284 43 15 chr12 31933701 31934448 -111852007 + HERV16 LTR ERVL 1 768 -4228 1562 329 43 11 chr12 31934460 31935153 -111851302 + HERV16 LTR ERVL 2826 3540 -2224 1899 202 18 5 chr12 31935154 31935545 -111850910 - MER63C DNA MER1_type -16 914 519 708 215 133 0 chr12 31935620 31935755 -111850700 - AluJb SINE Alu -17 295 143 8222 68 9 9 chr12 31935755 31936812 -111849643 + MER11C LTR ERVK 1 1057 -14 1946 193 23 23 chr12 31936908 31937343 -111849112 - MER63C DNA MER1_type -446 484 50 371 333 60 31 chr12 31937565 31937982 -111848473 + HERV16 LTR ERVL 3910 4290 -706 466 312 46 21 chr12 31938284 31938655 -111847800 + HERV16 LTR ERVL 4537 5310 -175 611 320 63 40 chr12 31938808 31939255 -111847200 + LTR16B LTR ERVL 8 464 0 797 269 137 55 chr12 31939255 31939692 -111846763 + L1ME2 LINE L1 4843 5326 -820 1613 222 122 16 chr12 31939692 31940143 -111846312 - MLT1D LTR MaLR -2 503 5 797 269 137 55 chr12 31940143 31940195 -111846260 + L1ME2 LINE L1 5326 5372 -774 283 342 116 13 chr12 31941438 31941593 -111844862 + MIR3 SINE MIR 17 187 -21 272 327 101 42 chr12 31943573 31943790 -111842665 + L2 LINE L2 2851 3080 -192 1288 215 21 58 chr12 31944372 31944641 -111841814 + L1ME2 LINE L1 5793 6046 -118 2750 202 80 79 chr12 31944641 31945466 -111840989 + LTR1B LTR ERV1 1 826 0 1288 215 21 58 chr12 31945466 31945572 -111840883 + L1ME2 LINE L1 6046 6154 -10 375 60 0 0 chr12 31945719 31945769 -111840686 + (TG)n Simple_repeat Simple_repeat 1 50 0 1348 213 54 57 chr12 31946127 31946516 -111839939 - MLT1B LTR MaLR -1 389 2 200 286 176 11 chr12 31946552 31946643 -111839812 - L2 LINE L2 -1 3312 3207 541 234 55 45 chr12 31947555 31947756 -111838699 - MIR SINE MIR -47 215 13 2165 122 0 0 chr12 31948136 31948431 -111838024 - AluSx SINE Alu -17 295 1 570 272 69 0 chr12 31949133 31949306 -111837149 - MIR SINE MIR -73 189 5 915 161 0 0 chr12 31949337 31949517 -111836938 + (CTATA)n Simple_repeat Simple_repeat 1 180 0 228 189 40 0 chr12 31949542 31949616 -111836839 + (CTATA)n Simple_repeat Simple_repeat 2 78 0 4045 109 13 30 chr12 31952225 31952688 -111833767 - L1PA16 LINE L1 -104 6062 5610 1840 137 3 82 chr12 31952688 31953016 -111833439 - AluSx SINE Alu -10 302 1 4045 109 13 30 chr12 31953016 31953156 -111833299 - L1PA16 LINE L1 -556 5610 5469 2194 118 0 0 chr12 31954570 31954867 -111831588 - AluSx SINE Alu -15 297 1 25 31 0 0 chr12 31955658 31955690 -111830765 + AT_rich Low_complexity Low_complexity 1 32 0 354 173 12 25 chr12 31955996 31956077 -111830378 - MER116 DNA Mariner 0 80 1 828 215 123 53 chr12 31957381 31957713 -111828742 - LTR37A LTR ERV1 -123 303 14 21 0 0 0 chr12 31957886 31957907 -111828548 + AT_rich Low_complexity Low_complexity 1 21 0 321 353 17 9 chr12 31957978 31958094 -111828361 - MER89-int LTR ERV1 -4374 273 157 491 296 96 21 chr12 31958303 31958583 -111827872 - MER89-int LTR ERV1 -4428 2373 2073 758 241 97 97 chr12 31958900 31959365 -111827090 - L1M4 LINE L1 -929 5217 4753 325 194 15 0 chr12 31959506 31959573 -111826882 + LTR60 LTR ERV1 1 68 -518 1161 231 62 19 chr12 31959690 31960011 -111826444 + LTR43 LTR ERV1 131 465 -137 500 268 134 8 chr12 31960494 31960860 -111825595 + L1ME4a LINE L1 5710 6121 0 375 23 0 0 chr12 31961968 31962012 -111824443 + (CA)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr12 31962779 31962805 -111823650 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr12 31963668 31963689 -111822766 + GC_rich Low_complexity Low_complexity 1 21 0 1045 238 39 83 chr12 31964322 31964789 -111821666 - LTR40a LTR ERVL -13 506 61 541 277 123 45 chr12 31965414 31965554 -111820901 + L2 LINE L2 2815 2943 -370 2441 77 0 0 chr12 31965554 31965852 -111820603 - AluSg SINE Alu -12 298 1 541 277 123 45 chr12 31965852 31966043 -111820412 + L2 LINE L2 2943 3172 -141 2478 231 83 46 chr12 31966415 31967237 -111819218 - MER21B LTR ERV1 -11 852 1 3259 186 20 50 chr12 31967447 31968244 -111818211 - MER21B-int LTR ERV1 -58 4133 3361 2996 201 11 16 chr12 31968244 31968912 -111817543 - MER21B-int LTR ERV1 -772 3419 2756 199 303 61 53 chr12 31969526 31969658 -111816797 - MER5B DNA MER1_type -43 135 3 750 227 127 23 chr12 31969667 31969887 -111816568 - MIR SINE MIR -2 260 18 2494 70 0 0 chr12 31970345 31970646 -111815809 - AluY SINE Alu -10 301 1 445 267 167 56 chr12 31970816 31971086 -111815369 - L2 LINE L2 -86 3227 2928 304 237 219 26 chr12 31971125 31971239 -111815216 - L2 LINE L2 -250 3063 2928 310 239 229 28 chr12 31971279 31971388 -111815067 - L2 LINE L2 -251 3062 2932 1547 143 181 27 chr12 31971389 31971754 -111814701 + MSTA LTR MaLR 1 421 -7 404 327 110 8 chr12 31971761 31972024 -111814431 - L2 LINE L2 -374 2940 2651 2414 80 0 0 chr12 31972029 31972318 -111814137 + AluSq SINE Alu 11 299 -14 1381 155 134 63 chr12 31972318 31972720 -111813735 + LTR54B LTR ERV1 14 453 -45 1554 160 0 69 chr12 31972720 31973038 -111813417 + AluJb SINE Alu 1 296 -16 1381 155 134 63 chr12 31973038 31973081 -111813374 + LTR54B LTR ERV1 453 491 -7 2549 53 0 3 chr12 31973335 31973639 -111812816 - AluY SINE Alu 0 311 9 961 202 83 138 chr12 31974490 31975005 -111811450 + LTR45B LTR ERV1 2 488 -1 236 312 156 0 chr12 31975747 31975824 -111810631 - L2 LINE L2 0 3272 3184 274 125 0 78 chr12 31975942 31976006 -111810449 - L1PB4 LINE L1 -1 6155 6097 368 262 9 0 chr12 31976234 31976341 -111810114 - LTR43 LTR ERV1 -306 296 189 1360 148 49 0 chr12 31976545 31976789 -111809666 - L1PB4 LINE L1 -50 6106 5851 520 306 121 19 chr12 31976975 31977347 -111809108 - Charlie8 DNA MER1_type -1896 521 112 198 71 0 0 chr12 31977504 31977532 -111808923 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 203 272 141 0 chr12 31977544 31977636 -111808819 - L2 LINE L2 -16 3297 3193 3830 115 0 6 chr12 31977927 31978457 -111807998 - MER1A DNA MER1_type 0 527 1 1096 182 63 20 chr12 31978939 31979241 -111807214 + MER33 DNA MER1_type 10 324 0 27 29 0 0 chr12 31980042 31980076 -111806379 + AT_rich Low_complexity Low_complexity 1 34 0 3406 141 87 13 chr12 31980513 31981538 -111804917 + Tigger3b DNA MER2_type 40 1232 0 22 0 0 0 chr12 31981711 31981733 -111804722 + AT_rich Low_complexity Low_complexity 1 22 0 315 169 0 0 chr12 31981995 31982066 -111804389 + (TA)n Simple_repeat Simple_repeat 2 72 0 732 251 92 53 chr12 31982271 31982686 -111803769 + Charlie2 DNA MER1_type 44 474 -2308 1630 213 73 55 chr12 31982715 31983613 -111802842 + Charlie2a DNA MER1_type 1482 2362 -500 2328 99 0 0 chr12 31983613 31983907 -111802548 + AluY SINE Alu 3 296 -15 1630 213 73 55 chr12 31983907 31984050 -111802405 + Charlie2a DNA MER1_type 2362 2501 -361 8037 77 5 9 chr12 31984050 31985126 -111801329 + MER11C LTR ERVK 1 1071 0 1630 213 73 55 chr12 31985126 31985393 -111801062 + Charlie2a DNA MER1_type 2501 2845 -17 25 0 0 0 chr12 31986000 31986025 -111800430 + AT_rich Low_complexity Low_complexity 1 25 0 2117 138 33 30 chr12 31986035 31986398 -111800057 + THE1B LTR MaLR 1 364 0 199 211 211 32 chr12 31986554 31986677 -111799778 - L2 LINE L2 -11 3302 3158 24 67 0 0 chr12 31987760 31987805 -111798650 + AT_rich Low_complexity Low_complexity 1 45 0 183 258 106 0 chr12 31988382 31988448 -111798007 - MIR SINE MIR -109 153 81 5225 117 16 41 chr12 31988616 31989621 -111796834 + L1PB3 LINE L1 5176 6154 0 38 22 0 0 chr12 31990157 31990202 -111796253 + AT_rich Low_complexity Low_complexity 1 45 0 2074 139 2 42 chr12 31990203 31990472 -111795983 - L1MA7 LINE L1 -2 6289 6040 1961 158 45 20 chr12 31990472 31990827 -111795628 + THE1B LTR MaLR 1 364 0 2074 139 2 42 chr12 31990827 31990961 -111795494 - L1MA7 LINE L1 -251 6040 5902 1295 156 40 8 chr12 31990973 31991223 -111795232 + L1M2 LINE L1 5373 5630 -661 417 374 58 0 chr12 31992576 31992715 -111793740 - L2 LINE L2 0 3272 3126 3539 133 9 52 chr12 31992803 31993433 -111793022 - LTR26 LTR ERV1 0 603 1 660 291 35 6 chr12 31993479 31993651 -111792804 - MIR SINE MIR -77 185 9 2182 168 48 30 chr12 31993755 31994071 -111792384 + LTR24 LTR ERV1 1 329 -138 2213 141 0 0 chr12 31994071 31994383 -111792072 + AluSx SINE Alu 1 312 0 2182 168 48 30 chr12 31994383 31994525 -111791930 + LTR24 LTR ERV1 329 467 0 967 258 51 110 chr12 31994585 31995175 -111791280 + MLT1G LTR MaLR 20 574 -16 207 220 0 0 chr12 31995225 31995275 -111791180 + (CA)n Simple_repeat Simple_repeat 1 50 0 2148 117 7 26 chr12 31995674 31995983 -111790472 + AluSx SINE Alu 1 303 -9 483 305 135 13 chr12 31996140 31996599 -111789856 - L1ME2 LINE L1 -212 5952 5438 646 252 40 97 chr12 31996604 31997028 -111789427 + HAL1 LINE L1 2070 2469 -38 342 0 0 0 chr12 31997237 31997275 -111789180 + (TG)n Simple_repeat Simple_repeat 2 39 0 255 277 31 0 chr12 31997357 31997422 -111789033 + CT-rich Low_complexity Low_complexity 4 70 0 550 287 146 53 chr12 31997883 31998641 -111787814 - L2 LINE L2 0 3272 2360 309 307 18 9 chr12 31998810 31998924 -111787531 + L2 LINE L2 3153 3267 -5 220 303 90 0 chr12 31999187 31999276 -111787179 - MIR SINE MIR -7 255 159 427 172 56 141 chr12 31999276 31999474 -111786981 - MER53 DNA DNA -8 181 1 285 319 51 22 chr12 31999476 31999614 -111786841 - MIR SINE MIR -93 169 28 208 190 10 130 chr12 32000172 32000272 -111786183 + MIR SINE MIR 118 205 -57 465 241 46 9 chr12 32000973 32001081 -111785374 - L2 LINE L2 -3 3310 3199 712 270 67 30 chr12 32001733 32002233 -111784222 - MLT1G LTR MaLR -2 588 1 4754 198 106 16 chr12 32003662 32004240 -111782215 + Charlie1a DNA MER1_type 1 526 -2235 1812 199 63 72 chr12 32004240 32004799 -111781656 + MLT2B3 LTR ERVL 1 554 0 4754 198 106 16 chr12 32004799 32005556 -111780899 + Charlie1a DNA MER1_type 526 1455 0 235 160 11 43 chr12 32005898 32005992 -111780463 + CT-rich Low_complexity Low_complexity 2 92 0 222 37 0 0 chr12 32006689 32006716 -111779739 + (CA)n Simple_repeat Simple_repeat 1 27 0 233 203 51 38 chr12 32006872 32006951 -111779504 - MIR SINE MIR -24 238 159 545 292 42 54 chr12 32006959 32007158 -111779297 + MIR SINE MIR 10 207 -55 2148 101 24 3 chr12 32007158 32007455 -111779000 + AluY SINE Alu 1 303 -8 545 292 42 54 chr12 32007455 32007495 -111778960 + MIR SINE MIR 207 246 -16 368 278 31 0 chr12 32007498 32007595 -111778860 - MIR SINE MIR -106 156 57 23 33 0 0 chr12 32008120 32008150 -111778305 + AT_rich Low_complexity Low_complexity 1 30 0 1733 183 0 0 chr12 32008150 32008435 -111778020 - AluJo SINE Alu -27 285 1 414 298 50 35 chr12 32009295 32009436 -111777019 + MIR3 SINE MIR 5 147 -61 1176 235 96 38 chr12 32009563 32009929 -111776526 + MSTD LTR MaLR 1 387 -9 294 29 0 0 chr12 32009935 32009970 -111776485 + (CA)n Simple_repeat Simple_repeat 2 36 0 4038 194 31 97 chr12 32009974 32011209 -111775246 + L1MC3 LINE L1 6630 7782 -3 2534 230 91 9 chr12 32011201 32011489 -111774966 + L1ME2 LINE L1 4639 4902 -1262 * 180 0 0 0 chr12 32011489 32011509 -111774946 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2534 230 91 9 chr12 32011509 32012623 -111773832 + L1ME2 LINE L1 4902 6162 -2 368 300 9 0 chr12 32012668 32012778 -111773677 - MIR SINE MIR 0 262 152 239 108 0 0 chr12 32013676 32013713 -111772742 + Alu SINE Alu 260 296 -4 216 0 0 0 chr12 32014096 32014120 -111772335 + (A)n Simple_repeat Simple_repeat 1 24 0 2078 143 0 7 chr12 32014529 32014836 -111771619 + AluJb SINE Alu 1 305 -7 2295 212 81 14 chr12 32015304 32015849 -111770606 + MER77 LTR ERV1 41 597 -8 1669 167 48 3 chr12 32017001 32017294 -111769161 + AluSx SINE Alu 1 306 -6 838 194 14 126 chr12 32017849 32018143 -111768312 - LTR41 LTR ERVL -7 766 506 767 208 67 12 chr12 32018288 32018489 -111767966 - LTR41 LTR ERVL -556 239 1 5706 150 20 20 chr12 32019296 32022468 -111763987 + L1MA2 LINE L1 16 3186 -4537 836 172 23 0 chr12 32022468 32022596 -111763859 + FLAM_C SINE Alu 3 133 0 5706 150 20 20 chr12 32022596 32022894 -111763561 + L1MA2 LINE L1 3186 3482 -4241 297 0 0 0 chr12 32022894 32022927 -111763528 + (CA)n Simple_repeat Simple_repeat 2 34 0 5706 150 20 20 chr12 32022927 32024708 -111761747 + L1MA2 LINE L1 3482 5261 -2462 2663 102 32 0 chr12 32024708 32025052 -111761403 + THE1A LTR MaLR 1 355 0 11415 102 53 1 chr12 32025052 32026555 -111759900 + THE1A-int LTR MaLR 1 1580 0 2484 100 41 0 chr12 32026555 32026896 -111759559 + THE1A LTR MaLR 1 355 0 5706 150 20 20 chr12 32026896 32027695 -111758760 + L1MA2 LINE L1 5261 6058 -1665 2186 129 3 0 chr12 32027695 32028006 -111758449 + AluSx SINE Alu 1 312 0 5706 150 20 20 chr12 32028006 32028847 -111757608 + L1MA2 LINE L1 6058 6897 -826 425 162 0 27 chr12 32028847 32028921 -111757534 + L1PA8A LINE L1 6055 6126 -5 * 5706 118 16 5 chr12 32028918 32029752 -111756703 + L1MA2 LINE L1 6881 7723 0 5706 150 20 20 chr12 32028921 32029761 -111756694 + L1MA2 LINE L1 6897 7723 0 718 133 0 31 chr12 32030008 32030136 -111756319 - L1MA9 LINE L1 0 6312 6189 2257 102 0 10 chr12 32030485 32030799 -111755656 - AluSq SINE Alu -2 311 1 488 296 151 0 chr12 32030970 32031156 -111755299 - MIR SINE MIR -28 234 21 238 286 60 12 chr12 32031233 32031317 -111755138 + MIR3 SINE MIR 98 185 -23 2340 162 16 0 chr12 32033798 32034163 -111752292 - THE1C LTR MaLR -4 371 1 9631 116 38 67 chr12 32034171 32035788 -111750667 - THE1C-int LTR MaLR -8 1572 2 2303 156 36 0 chr12 32035789 32036149 -111750306 - THE1C LTR MaLR 0 375 3 402 280 126 43 chr12 32036395 32036575 -111749880 - L1ME3A LINE L1 -223 6016 5852 4640 140 79 59 chr12 32036575 32037460 -111748995 - MER4D LTR ERV1 0 903 1 402 280 126 43 chr12 32037460 32037834 -111748621 - L1ME3A LINE L1 -387 5852 5407 1065 261 129 21 chr12 32037850 32038283 -111748172 - L1ME2 LINE L1 -6 6158 5679 1397 268 80 9 chr12 32038288 32038750 -111747705 - L1ME3A LINE L1 -5455 941 447 884 235 201 7 chr12 32038774 32039063 -111747392 - L1ME3A LINE L1 -5992 404 60 321 237 66 66 chr12 32039099 32039251 -111747204 - Charlie2 DNA MER1_type -2466 316 165 2270 85 7 7 chr12 32039411 32039706 -111746749 - AluSc SINE Alu -14 295 1 2730 96 6 3 chr12 32041140 32041494 -111744961 + THE1A LTR MaLR 1 355 0 12147 103 5 11 chr12 32041494 32041914 -111744541 + THE1A-int LTR MaLR 1 422 -1158 2100 114 0 10 chr12 32041914 32042213 -111744242 + AluSg SINE Alu 1 296 -14 12147 103 5 11 chr12 32042213 32043379 -111743076 + THE1A-int LTR MaLR 422 1578 -2 2383 117 38 0 chr12 32043381 32043723 -111742732 + THE1A LTR MaLR 1 355 0 747 176 120 0 chr12 32045280 32045422 -111741033 + MER58B DNA MER1_type 181 339 -2 2684 217 60 107 chr12 32046617 32046807 -111739648 - L1MC5 LINE L1 -74 7887 7690 1584 147 41 44 chr12 32046807 32047100 -111739355 - AluJo SINE Alu -18 294 3 2684 217 60 107 chr12 32047100 32048174 -111738281 - L1MC5 LINE L1 -271 7690 6682 5617 196 61 18 chr12 32048194 32050360 -111736095 - L1MB7 LINE L1 -1 6183 3938 214 333 0 0 chr12 32050401 32050449 -111736006 - MIR SINE MIR -209 53 6 * 221 287 188 74 chr12 32050410 32050926 -111735529 + L2 LINE L2 2012 2586 -728 244 263 38 0 chr12 32051107 32051187 -111735268 - L1ME LINE L1 -275 5846 5764 707 232 147 0 chr12 32051721 32051919 -111734536 - LTR16A1 LTR ERVL -28 429 203 28616 53 5 5 chr12 32052044 32056406 -111730049 + L1PA5 LINE L1 1543 6432 -2 198 91 0 0 chr12 32056439 32056472 -111729983 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 237 171 146 85 chr12 32056582 32056664 -111729791 - L2 LINE L2 -4 3268 3182 569 286 0 20 chr12 32059514 32059661 -111726794 + MIR SINE MIR 8 151 -111 259 340 62 0 chr12 32060115 32060212 -111726243 + MIR3 SINE MIR 78 180 -28 199 306 41 51 chr12 32062082 32062180 -111724275 - MIR SINE MIR -106 156 60 417 191 32 63 chr12 32062180 32062306 -111724149 + L1ME4a LINE L1 5964 6085 -36 1536 197 14 37 chr12 32062419 32062714 -111723741 + AluJo SINE Alu 11 298 -14 2065 68 39 84 chr12 32062961 32063271 -111723184 - AluSg SINE Alu -14 296 1 278 284 29 64 chr12 32063454 32063658 -111722797 - L2 LINE L2 -179 3093 2897 2530 145 23 0 chr12 32064177 32064570 -111721885 + MER57A LTR ERV1 2 403 0 2667 196 24 2 chr12 32065270 32065920 -111720535 + L1P5 LINE L1 4799 5460 -696 274 27 27 0 chr12 32065924 32065961 -111720494 + L1PB4 LINE L1 5928 5965 -191 892 317 51 59 chr12 32066456 32067099 -111719356 - L2 LINE L2 -346 2968 2331 611 121 0 11 chr12 32068544 32068635 -111717820 - 5S rRNA rRNA -31 90 1 191 337 139 0 chr12 32068791 32068877 -111717578 + MIR SINE MIR 50 147 -61 2077 114 20 13 chr12 32068924 32069223 -111717232 + AluSp SINE Alu 1 301 -12 4247 124 16 31 chr12 32069719 32070404 -111716051 - MER4D LTR ERV1 -197 675 1 366 179 0 77 chr12 32070404 32070482 -111715973 + AluJo SINE Alu 81 152 -150 279 293 24 0 chr12 32070547 32070629 -111715826 + LTR35 LTR ERV1 46 129 -489 712 235 66 44 chr12 32070747 32071075 -111715380 + LTR35 LTR ERV1 350 614 -4 806 227 0 23 chr12 32071078 32071250 -111715205 + FRAM SINE Alu 1 40 0 225 193 126 42 chr12 32071391 32071510 -111714945 + L1ME4a LINE L1 5988 6116 -5 1380 167 13 0 chr12 32071801 32072034 -111714421 - AluJo SINE Alu -4 308 73 18954 194 26 20 chr12 32072045 32076686 -111709769 + L1PA12 LINE L1 1 6008 -1576 1599 224 83 13 chr12 32076705 32076965 -111709490 - MLT1C LTR MaLR -4 463 166 309 26 0 0 chr12 32076965 32077003 -111709452 + (TG)n Simple_repeat Simple_repeat 2 39 0 1599 224 83 13 chr12 32077003 32077126 -111709329 - MLT1C LTR MaLR -301 166 53 333 350 86 27 chr12 32077360 32077546 -111708909 + MIR SINE MIR 16 212 -50 339 200 133 0 chr12 32078079 32078169 -111708286 + MIR SINE MIR 73 174 -88 1118 186 95 113 chr12 32078169 32078539 -111707916 - MLT1B LTR MaLR 0 390 28 2015 129 25 0 chr12 32078552 32078857 -111707598 + AluSq SINE Alu 1 312 0 280 304 207 4 chr12 32079253 32079519 -111706936 + L2 LINE L2 2643 2962 -352 569 183 63 40 chr12 32079967 32080093 -111706362 + L2 LINE L2 3140 3268 -4 2382 190 66 0 chr12 32080115 32080254 -111706201 + L1MB3 LINE L1 5681 5809 -374 2840 16 0 0 chr12 32080254 32080565 -111705890 + AluY SINE Alu 1 311 0 2382 190 66 0 chr12 32080565 32080894 -111705561 + L1MB3 LINE L1 5809 6180 -3 402 264 214 11 chr12 32081277 32081455 -111705000 + MLT1H1 LTR MaLR 5 218 -377 458 249 90 48 chr12 32081567 32081756 -111704699 + MLT1H1 LTR MaLR 358 554 -1 214 182 18 73 chr12 32082015 32082070 -111704385 - L2 LINE L2 0 3313 3262 2181 98 0 3 chr12 32084506 32084791 -111701664 - AluSg SINE Alu -26 284 1 1964 253 80 30 chr12 32085759 32086324 -111700131 + MLT1E LTR MaLR 1 593 0 261 319 92 25 chr12 32086669 32086788 -111699667 - MER91A DNA MER1_type -69 127 1 302 222 0 16 chr12 32086935 32086998 -111699457 + L2 LINE L2 3237 3298 -15 260 236 0 0 chr12 32087320 32087375 -111699080 - L2 LINE L2 -332 2981 2927 427 231 175 6 chr12 32087420 32087580 -111698875 - LTR50 LTR ERVL -19 776 590 659 221 56 10 chr12 32087750 32087948 -111698507 - LTR41 LTR ERVL -575 220 1 9537 295 59 27 chr12 32088288 32090168 -111696287 - ERVL LTR ERVL -394 5370 3551 6728 143 98 26 chr12 32090168 32091360 -111695095 + MER52C LTR ERV1 1 1278 0 9537 295 59 27 chr12 32091360 32093019 -111693436 - ERVL LTR ERVL -2213 3551 1719 823 202 48 12 chr12 32093020 32093188 -111693267 - MER58B DNA MER1_type 0 341 168 334 312 25 13 chr12 32095026 32095183 -111691272 + Charlie2 DNA MER1_type 165 323 -2459 2253 263 122 9 chr12 32095183 32095984 -111690471 + L1ME3A LINE L1 45 936 -5460 1104 275 117 5 chr12 32095988 32096414 -111690041 + L1ME2 LINE L1 5672 6145 -19 515 299 89 54 chr12 32096445 32096894 -111689561 + L1ME3A LINE L1 5407 5839 -400 2080 128 0 7 chr12 32096894 32097199 -111689256 + AluSx SINE Alu 1 303 -9 1997 125 21 0 chr12 32097203 32097491 -111688964 + AluSx SINE Alu 3 296 -16 515 299 89 54 chr12 32097491 32097645 -111688810 + L1ME3A LINE L1 5841 6036 -203 2448 147 70 2 chr12 32098889 32099290 -111687165 - MSTA LTR MaLR 0 428 1 2632 40 3 0 chr12 32100454 32100755 -111685700 + L1PA4 LINE L1 5852 6153 -2 1654 136 4 12 chr12 32101109 32101367 -111685088 + AluSq SINE Alu 41 296 -17 493 278 183 6 chr12 32101504 32101684 -111684771 + MIR SINE MIR 23 234 -28 821 108 0 0 chr12 32102177 32102297 -111684158 + L1MA9 LINE L1 6189 6308 -4 241 146 0 36 chr12 32103095 32103150 -111683305 - L1M4 LINE L1 -1962 4184 4132 738 180 42 58 chr12 32103405 32103561 -111682894 + LTR41 LTR ERVL 2 156 -617 2035 77 0 33 chr12 32103561 32103833 -111682622 - AluY SINE Alu -12 299 37 738 180 42 58 chr12 32103833 32103865 -111682590 + LTR41 LTR ERVL 156 187 -586 863 187 14 126 chr12 32104031 32104325 -111682130 + LTR41 LTR ERVL 506 766 -7 2104 112 0 3 chr12 32105393 32105701 -111680754 + AluY SINE Alu 1 307 0 2179 222 76 17 chr12 32106422 32106948 -111679507 - MER77 LTR ERV1 -8 597 41 21 36 0 0 chr12 32107616 32107644 -111678811 + AT_rich Low_complexity Low_complexity 1 28 0 208 359 94 8 chr12 32108271 32108399 -111678056 - L2 LINE L2 -347 2966 2828 322 255 108 0 chr12 32108523 32108625 -111677830 + MIR SINE MIR 125 237 -25 21 0 0 0 chr12 32109071 32109092 -111677363 + AT_rich Low_complexity Low_complexity 1 21 0 463 232 36 0 chr12 32109220 32109332 -111677123 - MIR SINE MIR -63 199 84 3274 96 38 2 chr12 32109486 32109933 -111676522 + L1PA13 LINE L1 5699 6161 -2 3552 259 81 10 chr12 32111235 32111959 -111674496 - L1MD3 LINE L1 -70 7925 7083 2076 135 0 3 chr12 32111959 32112248 -111674207 - AluSx SINE Alu -24 288 1 3552 259 81 10 chr12 32112248 32112711 -111673744 - L1MD3 LINE L1 -912 7083 6654 23 0 0 0 chr12 32112743 32112766 -111673689 + GC_rich Low_complexity Low_complexity 1 23 0 385 268 31 0 chr12 32114046 32114143 -111672312 + MIR SINE MIR 57 156 -106 627 303 44 4 chr12 32114146 32114374 -111672081 - MIR SINE MIR -16 246 10 257 242 11 0 chr12 32115328 32115419 -111671036 + A-rich Low_complexity Low_complexity 2 93 0 1407 142 86 44 chr12 32115787 32116195 -111670260 - Charlie1a DNA MER1_type -34 1421 997 5357 21 0 6 chr12 32116195 32116850 -111669605 - L1PA2 LINE L1 0 6155 5538 3368 28 0 0 chr12 32116850 32117274 -111669181 + L1P LINE L1 4828 5251 -895 3625 186 114 19 chr12 32117274 32117613 -111668842 - Charlie1a DNA MER1_type -1754 1007 702 1955 181 39 100 chr12 32117613 32118203 -111668252 - MLT2B3 LTR ERVL 0 554 1 3625 186 114 19 chr12 32118203 32118782 -111667673 - Charlie1a DNA MER1_type -2059 702 1 31 26 0 0 chr12 32119600 32119638 -111666817 + AT_rich Low_complexity Low_complexity 1 38 0 397 339 113 8 chr12 32120215 32120472 -111665983 + MLT1H1 LTR MaLR 20 303 -252 670 224 5 82 chr12 32120485 32120681 -111665774 + LTR41 LTR ERVL 10 190 -583 339 242 128 20 chr12 32120969 32121118 -111665337 + LTR41 LTR ERVL 606 770 -3 424 339 5 5 chr12 32121500 32121692 -111664763 + HERVL LTR ERVL 427 618 -5036 921 339 33 28 chr12 32121756 32122400 -111664055 + HERVL LTR ERVL 785 1431 -4333 2393 75 3 0 chr12 32122754 32123049 -111663406 - AluY SINE Alu -15 296 1 488 273 111 35 chr12 32123204 32123402 -111663053 - MIR SINE MIR -30 232 20 1366 151 52 116 chr12 32123439 32123964 -111662491 - MER4C LTR ERV1 0 465 58 360 0 0 0 chr12 32123964 32124004 -111662451 + (TG)n Simple_repeat Simple_repeat 1 40 0 1366 151 52 116 chr12 32124004 32124059 -111662396 - MER4C LTR ERV1 -407 58 1 7454 175 74 51 chr12 32124063 32127333 -111659122 - MER4C-int LTR ERV1 -2 6596 2810 480 188 7 69 chr12 32127339 32127660 -111658795 - MER4A LTR ERV1 -238 348 1 1043 227 26 0 chr12 32127682 32127946 -111658509 + L1MB5 LINE L1 5566 5836 -338 1812 148 92 22 chr12 32127946 32128305 -111658150 - LTR26B LTR ERV1 0 531 148 235 100 200 0 chr12 32128305 32128355 -111658100 - LTR26B LTR ERV1 -343 188 129 8349 152 23 23 chr12 32128356 32129905 -111656550 - L1P LINE L1 -4587 1559 11 673 239 5 73 chr12 32130150 32130368 -111656087 - LTR26 LTR ERV1 0 603 401 4108 108 12 0 chr12 32130381 32130973 -111655482 - L1PA10 LINE L1 -11 6472 5874 4500 57 3 0 chr12 32131006 32131588 -111654867 - LTR8 LTR ERV1 -107 584 1 33749 69 16 12 chr12 32131589 32136405 -111650050 - HUERS-P1 LTR ERV1 -1 6262 1427 5995 104 36 2 chr12 32136409 32137296 -111649159 - HUERS-P1 LTR ERV1 -5346 917 1 996 112 0 0 chr12 32137297 32137440 -111649015 - LTR8 LTR ERV1 -1 690 548 21526 190 23 22 chr12 32137440 32140443 -111646012 - L1PA10 LINE L1 -743 5718 2576 2377 107 0 3 chr12 32140443 32140752 -111645703 - AluY SINE Alu -3 308 1 21526 190 23 22 chr12 32140752 32143098 -111643357 - L1PA10 LINE L1 -3885 2576 234 393 145 0 26 chr12 32143075 32143185 -111643270 + L1PA10 LINE L1 6074 6181 0 * 718 150 7 54 chr12 32143185 32143332 -111643123 + L1MCa LINE L1 472 611 -5815 4623 243 19 10 chr12 32143377 32144729 -111641726 + L1MC1 LINE L1 3884 5248 -898 565 150 230 0 chr12 32144729 32144829 -111641626 + FLAM_C SINE Alu 1 123 -20 5269 144 16 25 chr12 32144851 32144935 -111641520 + L1MC1 LINE L1 5254 5337 -996 1636 186 10 10 chr12 32144935 32145225 -111641230 + AluJb SINE Alu 3 292 -20 5269 144 16 25 chr12 32145225 32146112 -111640343 + L1MC1 LINE L1 5337 6217 -116 867 236 130 95 chr12 32146112 32146650 -111639805 - MER34B LTR ERV1 0 565 9 667 171 0 8 chr12 32146670 32146793 -111639662 + L1MC1 LINE L1 6212 6333 0 1112 179 130 3 chr12 32146806 32147113 -111639342 + MER45R DNA AcHobo 1233 1578 -3 309 263 13 0 chr12 32147309 32147385 -111639070 - L1MC5 LINE L1 -179 7782 7706 182 36 0 36 chr12 32148357 32148385 -111638070 + (CAAAAA)n Simple_repeat Simple_repeat 1 27 0 203 179 0 0 chr12 32148567 32148606 -111637849 + T-rich Low_complexity Low_complexity 1 39 0 2160 122 0 7 chr12 32148647 32148951 -111637504 + AluSx SINE Alu 1 302 -10 368 275 10 62 chr12 32149275 32149468 -111636987 - L1MC5 LINE L1 -63 7898 7716 1435 173 0 60 chr12 32149469 32149753 -111636702 - AluSx SINE Alu -9 303 37 842 222 104 32 chr12 32149769 32150210 -111636245 - L1MC5 LINE L1 -234 7727 7255 2226 99 0 0 chr12 32150397 32150712 -111635743 + AluY SINE Alu 1 315 0 1078 149 6 0 chr12 32150715 32150883 -111635572 + AluSc SINE Alu 133 301 -8 2147 142 66 57 chr12 32151020 32151444 -111635011 - MSTA LTR MaLR 0 428 1 2775 142 35 12 chr12 32151790 32152276 -111634179 + LOR1a LTR ERV1 1 497 0 21303 121 38 42 chr12 32152277 32153096 -111633359 + LOR1a-int LTR ERV1 2 823 -7297 531 0 0 0 chr12 32153096 32153155 -111633300 + (TG)n Simple_repeat Simple_repeat 2 60 0 21303 121 38 42 chr12 32153155 32155175 -111631280 + LOR1a-int LTR ERV1 823 2850 -5270 2016 141 0 0 chr12 32155175 32155501 -111630954 + AluSx SINE Alu 1 326 0 21303 121 38 42 chr12 32155501 32155571 -111630884 + LOR1a-int LTR ERV1 2850 2919 -5201 248 28 56 0 chr12 32155571 32155607 -111630848 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 21303 121 38 42 chr12 32155607 32155640 -111630815 + LOR1a-int LTR ERV1 2919 2951 -5169 2026 137 0 3 chr12 32155640 32155932 -111630523 - AluSx SINE Alu -21 291 1 21303 121 38 42 chr12 32155932 32156423 -111630032 + LOR1a-int LTR ERV1 2951 3443 -4677 1697 176 0 14 chr12 32156423 32156702 -111629753 + AluJb SINE Alu 13 287 -25 21303 121 38 42 chr12 32156702 32157325 -111629130 + LOR1a-int LTR ERV1 3443 4046 -4074 1083 252 19 4 chr12 32157429 32157695 -111628760 - LTR43 LTR ERV1 -141 461 192 264 135 19 0 chr12 32157881 32157933 -111628522 - LTR60 LTR ERV1 -531 55 3 2120 123 14 113 chr12 32158740 32159229 -111627226 - HUERS-P2 LTR ERV1 -2772 3174 2796 937 171 12 43 chr12 32159221 32159477 -111626978 - HUERS-P2 LTR ERV1 -4917 2040 1815 * 267 343 0 0 chr12 32160070 32160172 -111626283 - HUERS-P2 LTR ERV1 -1089 1999 1898 489 279 6 6 chr12 32160354 32160512 -111625943 - HUERS-P2 LTR ERV1 -5229 1862 1705 2174 170 45 16 chr12 32160675 32161123 -111625332 - LOR1b LTR ERV1 0 461 1 578 193 70 29 chr12 32162145 32162316 -111624139 - HUERS-P2 LTR ERV1 -3536 1262 1085 1018 258 106 11 chr12 32162504 32162873 -111623582 - LTR43 LTR ERV1 -20 582 179 353 132 15 0 chr12 32163049 32163117 -111623338 - LTR60 LTR ERV1 -517 69 1 8780 118 16 6 chr12 32163117 32164584 -111621871 + LOR1a-int LTR ERV1 4042 5524 -2596 1422 167 4 4 chr12 32164574 32164838 -111621617 + LOR1a-int LTR ERV1 5801 6064 -2056 * 371 75 150 12 chr12 32164837 32164917 -111621538 + LOR1a-int LTR ERV1 8030 8120 0 * 2841 146 22 14 chr12 32164917 32165137 -111621318 + LOR1a LTR ERV1 1 218 -279 2206 128 51 14 chr12 32165137 32165488 -111620967 + THE1B LTR MaLR 1 364 0 2841 146 22 14 chr12 32165488 32165760 -111620695 + LOR1a LTR ERV1 218 497 0 733 121 7 57 chr12 32166000 32166141 -111620314 - L1PA16 LINE L1 0 6166 6033 290 214 14 0 chr12 32166218 32166288 -111620167 - L1PA16 LINE L1 -173 5993 5923 7962 190 24 19 chr12 32166302 32167341 -111619114 - L1PA16 LINE L1 -9 6157 5124 2280 112 0 6 chr12 32167341 32167653 -111618802 - AluY SINE Alu -1 310 1 7962 190 24 19 chr12 32167653 32169537 -111616918 - L1PA16 LINE L1 -1042 5124 3230 744 301 60 0 chr12 32169555 32169871 -111616584 - L1 LINE L1 -3314 2832 2498 2079 169 9 0 chr12 32170456 32170788 -111615667 - MER1B DNA MER1_type -2 335 1 2257 112 3 13 chr12 32170891 32171203 -111615252 + AluSx SINE Alu 1 309 -3 2087 119 3 3 chr12 32171352 32171647 -111614808 + AluY SINE Alu 1 295 -16 248 369 36 0 chr12 32171853 32171964 -111614491 - L2 LINE L2 -7 3306 3192 282 247 11 11 chr12 32171977 32172070 -111614385 + (TA)n Simple_repeat Simple_repeat 1 93 0 557 246 93 7 chr12 32172079 32172315 -111614140 - L2 LINE L2 -161 3152 2832 2231 96 0 16 chr12 32172315 32172618 -111613837 + AluY SINE Alu 1 298 -13 1873 108 8 0 chr12 32173009 32173259 -111613196 - AluSc SINE Alu -14 295 44 26 30 0 0 chr12 32173304 32173337 -111613118 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr12 32174391 32174419 -111612036 + AT_rich Low_complexity Low_complexity 1 28 0 2132 214 48 53 chr12 32175029 32175398 -111611057 - MLT1E LTR MaLR -8 585 219 1836 100 0 38 chr12 32175398 32175535 -111610920 + L1MA1 LINE L1 6018 6140 -162 2515 63 0 0 chr12 32175535 32175834 -111610621 + AluY SINE Alu 1 299 -12 1836 100 0 38 chr12 32175834 32175986 -111610469 + L1MA1 LINE L1 6140 6296 -6 2132 214 48 53 chr12 32175986 32176200 -111610255 - MLT1E LTR MaLR -374 219 5 3956 259 102 32 chr12 32177167 32179064 -111607391 + L2 LINE L2 1206 3313 0 229 273 0 0 chr12 32180067 32180122 -111606333 + L2 LINE L2 3213 3267 -5 189 171 0 0 chr12 32180922 32180957 -111605498 + T-rich Low_complexity Low_complexity 1 35 0 411 222 22 11 chr12 32181475 32181565 -111604890 + MIR3 SINE MIR 93 183 -25 186 43 0 0 chr12 32181959 32181982 -111604473 + (CAT)n Simple_repeat Simple_repeat 2 24 0 4623 72 0 0 chr12 32182072 32182702 -111603753 + L1PA7 LINE L1 5543 6172 0 795 223 17 19 chr12 32183508 32183776 -111602679 + MER83B LTR ERV1 96 365 -12 1904 151 0 13 chr12 32184573 32184884 -111601571 + AluJb SINE Alu 1 307 -5 1136 226 224 18 chr12 32185180 32185598 -111600857 + L2 LINE L2 2303 2816 -498 2896 141 60 0 chr12 32185598 32186067 -111600388 + LOR1a LTR ERV1 1 497 0 1136 226 224 18 chr12 32186067 32186086 -111600369 + L2 LINE L2 2816 2830 -484 2001 154 9 12 chr12 32186094 32186439 -111600016 + LOR1a-int LTR ERV1 28 371 -7749 4595 120 72 16 chr12 32186451 32187274 -111599181 + MER83B-int LTR ERV1 203 1071 -7049 * 8956 101 12 20 chr12 32187273 32187285 -111599170 + MER83B-int LTR ERV1 2004 2015 -6105 4460 148 61 8 chr12 32187285 32188069 -111598386 + LTR1B LTR ERV1 1 826 0 8956 101 12 20 chr12 32188069 32189015 -111597440 + MER83B-int LTR ERV1 2015 2950 -5170 2175 128 0 22 chr12 32189015 32189334 -111597121 + AluSx SINE Alu 1 312 0 8956 101 12 20 chr12 32189334 32189840 -111596615 + MER83B-int LTR ERV1 2950 3458 -4662 7589 106 27 7 chr12 32189838 32191790 -111594665 + MER83B-int LTR ERV1 3503 5524 -2596 * 1437 97 113 4 chr12 32191780 32192018 -111594437 + MER83B-int LTR ERV1 5801 6064 -2056 * 530 139 0 0 chr12 32192017 32192103 -111594352 + LOR1a-int LTR ERV1 8030 8115 -5 * 3247 128 2 10 chr12 32192112 32192613 -111593842 + LOR1a LTR ERV1 1 497 0 685 232 79 116 chr12 32192636 32192986 -111593469 + L2 LINE L2 2817 3146 -167 2233 116 0 0 chr12 32192986 32193278 -111593177 - AluSg SINE Alu -18 292 1 685 232 79 116 chr12 32193278 32193409 -111593046 + L2 LINE L2 3146 3280 -33 2158 126 7 0 chr12 32193725 32194034 -111592421 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr12 32194112 32194144 -111592311 + AT_rich Low_complexity Low_complexity 1 32 0 255 335 33 20 chr12 32194747 32194899 -111591556 + L3b LINE CR1 1241 1394 -189 25947 30 3 1 chr12 32194920 32198830 -111587625 - L1PA4 LINE L1 -3 6152 2237 29 0 0 0 chr12 32201558 32201587 -111584868 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr12 32203178 32203206 -111583249 + AT_rich Low_complexity Low_complexity 1 28 0 518 91 131 0 chr12 32203607 32203706 -111582749 + LTR38 LTR ERV1 1 112 -444 461 231 6 64 chr12 32203763 32203919 -111582536 - L2 LINE L2 -5 3308 3162 271 298 41 50 chr12 32206277 32206398 -111580057 - L2 LINE L2 0 3272 3153 22 56 0 0 chr12 32206454 32206490 -111579965 + AT_rich Low_complexity Low_complexity 1 36 0 228 271 35 12 chr12 32206497 32206579 -111579876 - MIR SINE MIR 0 262 179 498 311 123 21 chr12 32206579 32206814 -111579641 + MIR SINE MIR 1 259 -3 2183 141 2 72 chr12 32207175 32207351 -111579104 + MLT1B LTR MaLR 1 188 -202 2256 94 3 3 chr12 32207351 32207649 -111578806 + AluSq SINE Alu 1 298 -15 2183 141 2 72 chr12 32207649 32207891 -111578564 + MLT1B LTR MaLR 188 390 0 22 0 0 0 chr12 32208691 32208713 -111577742 + AT_rich Low_complexity Low_complexity 1 22 0 203 309 36 24 chr12 32208970 32209054 -111577401 + MIR3 SINE MIR 72 156 -52 286 211 0 48 chr12 32209267 32209371 -111577084 + (TTTA)n Simple_repeat Simple_repeat 2 100 0 21 36 0 0 chr12 32209390 32209418 -111577037 + AT_rich Low_complexity Low_complexity 1 28 0 2388 129 32 10 chr12 32210298 32210708 -111575747 + L1MB2 LINE L1 5746 6164 -7 729 246 41 17 chr12 32210735 32211036 -111575419 + L1MB8 LINE L1 5875 6178 0 528 326 30 38 chr12 32211566 32211965 -111574490 + L1ME LINE L1 24 419 -6004 688 313 73 15 chr12 32212264 32212992 -111573463 + L1ME LINE L1 1121 1895 -4887 871 263 81 11 chr12 32212993 32213345 -111573110 + L1ME LINE L1 5702 6106 -851 2827 154 63 0 chr12 32213345 32213833 -111572622 + LTR44 LTR ERV1 1 519 0 871 263 81 11 chr12 32213833 32214057 -111572398 + L1ME LINE L1 6106 6313 -644 426 267 31 97 chr12 32214267 32214366 -111572089 + L2 LINE L2 2978 3082 -231 2282 92 0 0 chr12 32214366 32214680 -111571775 + AluSx SINE Alu 1 314 0 426 267 31 97 chr12 32214680 32214837 -111571618 + L2 LINE L2 3082 3218 -95 1465 211 56 30 chr12 32214837 32215263 -111571192 + MLT1C LTR MaLR 6 442 -25 323 294 0 20 chr12 32215291 32215393 -111571062 + L2 LINE L2 3209 3308 -5 908 206 16 0 chr12 32215448 32215632 -111570823 - MER58A DNA MER1_type 0 224 38 180 125 0 0 chr12 32216316 32216348 -111570107 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 206 292 14 0 chr12 32216356 32216428 -111570027 + (CATA)n Simple_repeat Simple_repeat 3 75 0 1767 112 97 4 chr12 32217527 32217794 -111568661 - AluSg SINE Alu -18 292 1 895 102 12 42 chr12 32217795 32217962 -111568493 + L1MA7 LINE L1 6128 6289 -2 29 78 0 0 chr12 32217963 32218027 -111568428 + AT_rich Low_complexity Low_complexity 1 64 0 904 216 7 64 chr12 32218553 32218835 -111567620 - L1MA10 LINE L1 -4 6330 6065 285 29 0 0 chr12 32218835 32218869 -111567586 + (TC)n Simple_repeat Simple_repeat 1 34 0 2212 102 0 0 chr12 32218874 32219159 -111567296 - AluSx SINE Alu -27 285 1 685 219 0 0 chr12 32219166 32219321 -111567134 - L1 LINE L1 -1278 4932 4778 1385 226 91 8 chr12 32219329 32219692 -111566763 - L1 LINE L1 -5748 393 1 1683 106 57 0 chr12 32220771 32221175 -111565280 - L1PA16 LINE L1 -9 6157 5683 1593 144 26 103 chr12 32221404 32221821 -111564634 + MLT1B LTR MaLR 1 385 -5 509 264 9 0 chr12 32223011 32223121 -111563334 + MIR SINE MIR 28 138 -124 349 293 60 0 chr12 32223957 32224073 -111562382 - MIR SINE MIR -110 152 30 956 201 77 14 chr12 32224595 32224804 -111561651 + MER58A DNA MER1_type 3 224 0 699 259 0 46 chr12 32225036 32225248 -111561207 + MIR SINE MIR 45 242 -20 22 0 0 0 chr12 32225454 32225476 -111560979 + AT_rich Low_complexity Low_complexity 1 22 0 2295 91 3 0 chr12 32225567 32225863 -111560592 + AluY SINE Alu 1 297 -14 2508 176 62 10 chr12 32225951 32226434 -111560021 + MLT2B3 LTR ERVL 1 508 -46 261 0 0 0 chr12 32226435 32226464 -111559991 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 13798 116 39 36 chr12 32226464 32227577 -111558878 - Tigger1 DNA MER2_type 0 2418 1310 699 118 0 0 chr12 32227577 32227712 -111558743 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 13798 116 39 36 chr12 32227712 32227733 -111558722 - Tigger1 DNA MER2_type -1108 1310 1291 2327 95 0 3 chr12 32227733 32228027 -111558428 - AluY SINE Alu -18 293 1 13798 116 39 36 chr12 32228027 32229279 -111557176 - Tigger1 DNA MER2_type -1127 1291 24 235 206 127 0 chr12 32229282 32229345 -111557110 + MLT2B1 LTR ERVL 444 514 -6 658 172 11 81 chr12 32230359 32230533 -111555922 - MLT1C LTR MaLR 0 467 306 312 275 80 46 chr12 32230641 32230943 -111555512 + L1ME LINE L1 5265 5576 -586 4475 180 60 4 chr12 32230999 32232819 -111553636 - L1MA4A LINE L1 -20 6283 4367 624 177 190 41 chr12 32232911 32233206 -111553249 - MER52A LTR ERV1 -147 970 283 934 167 11 80 chr12 32233307 32233498 -111552957 - L1MA4A LINE L1 -1779 4367 4197 2615 65 0 0 chr12 32233498 32233807 -111552648 - AluY SINE Alu -2 309 1 934 167 11 80 chr12 32233807 32233878 -111552577 - L1MA4A LINE L1 -1949 4197 4123 859 240 115 5 chr12 32234042 32234259 -111552196 + MIR SINE MIR 22 262 0 4751 177 23 10 chr12 32234470 32235376 -111551079 + MER49 LTR ERV1 6 923 0 269 206 0 14 chr12 32235751 32235824 -111550631 + GA-rich Low_complexity Low_complexity 3 74 0 189 74 0 0 chr12 32235969 32235996 -111550459 + (TC)n Simple_repeat Simple_repeat 1 27 0 12585 151 45 6 chr12 32236127 32236810 -111549645 + L1MA2 LINE L1 2593 3248 -3056 2280 102 0 7 chr12 32236810 32237103 -111549352 + AluSg SINE Alu 1 291 -19 12585 151 45 6 chr12 32237103 32240003 -111546452 + L1MA2 LINE L1 3248 6304 0 457 337 128 32 chr12 32240057 32240431 -111546024 + L2 LINE L2 2857 3266 -6 1890 134 80 11 chr12 32242605 32242956 -111543499 + THE1C LTR MaLR 1 375 0 2161 138 0 0 chr12 32243770 32244067 -111542388 + AluSx SINE Alu 1 297 -15 278 123 18 0 chr12 32244937 32244994 -111541461 + GA-rich Low_complexity Low_complexity 2 59 0 207 0 0 0 chr12 32245029 32245052 -111541403 + (CTTTG)n Simple_repeat Simple_repeat 4 26 0 24 53 0 0 chr12 32246895 32246933 -111539522 + AT_rich Low_complexity Low_complexity 1 38 0 260 269 172 11 chr12 32247663 32247756 -111538699 + MIR SINE MIR 120 227 -35 1119 281 110 29 chr12 32247791 32248480 -111537975 + L2 LINE L2 2540 3307 -6 215 256 140 10 chr12 32249040 32249144 -111537311 - MIR SINE MIR -67 141 28 2258 116 0 0 chr12 32250197 32250498 -111535957 - AluSx SINE Alu -11 301 1 21 82 0 0 chr12 32250869 32250918 -111535537 + AT_rich Low_complexity Low_complexity 1 49 0 2170 114 7 0 chr12 32252868 32253174 -111533281 + AluSg SINE Alu 1 308 -2 26 82 0 0 chr12 32254519 32254580 -111531875 + AT_rich Low_complexity Low_complexity 1 61 0 290 175 79 16 chr12 32255001 32255064 -111531391 + MER103 DNA DNA 4 70 -96 1546 186 0 19 chr12 32255119 32255388 -111531067 + AluJo SINE Alu 39 302 -10 2963 103 26 7 chr12 32256045 32256509 -111529946 - L1MA2 LINE L1 0 6304 5832 2329 89 0 0 chr12 32256889 32257192 -111529263 + AluY SINE Alu 1 303 -8 26 74 0 0 chr12 32257687 32257741 -111528714 + AT_rich Low_complexity Low_complexity 1 54 0 287 279 25 0 chr12 32257884 32257963 -111528492 - MIR SINE MIR -71 137 57 215 348 114 38 chr12 32258104 32258262 -111528193 - MIR SINE MIR -59 203 34 6785 125 54 4 chr12 32258354 32259527 -111526928 + Tigger3b DNA MER2_type 1 1231 0 32 57 0 0 chr12 32259752 32259805 -111526650 + AT_rich Low_complexity Low_complexity 1 53 0 2111 113 0 0 chr12 32259856 32260138 -111526317 - AluSx SINE Alu -30 282 1 670 214 169 4 chr12 32260202 32260468 -111525987 + LTR37A LTR ERV1 115 424 -2 2362 82 3 25 chr12 32260590 32260908 -111525547 + AluY SINE Alu 1 311 0 1720 175 86 6 chr12 32260925 32261263 -111525192 + MLT1A1 LTR MaLR 1 365 0 2217 112 0 0 chr12 32263460 32263763 -111522692 + AluSx SINE Alu 1 303 -9 228 220 160 20 chr12 32266138 32266238 -111520217 - MIR3 SINE MIR -92 116 3 315 300 0 11 chr12 32266426 32266516 -111519939 + L1MEc LINE L1 2236 2324 -4072 271 146 0 0 chr12 32266517 32266558 -111519897 + 5S rRNA rRNA 2 42 -79 897 180 90 86 chr12 32266634 32266912 -111519543 - MLT1B LTR MaLR -96 294 16 701 212 6 6 chr12 32266925 32267090 -111519365 - L1ME2 LINE L1 -2 6162 5998 335 123 231 0 chr12 32267124 32267189 -111519266 + MADE1 DNA Mariner 1 80 0 190 288 62 12 chr12 32267228 32267308 -111519147 + MIR SINE MIR 57 140 -122 415 316 59 11 chr12 32267586 32267773 -111518682 - MIR SINE MIR -10 252 57 1624 184 33 11 chr12 32268932 32269255 -111517200 + MER61B LTR ERV1 2 425 0 3964 173 38 20 chr12 32269566 32270276 -111516179 - MER21B LTR ERV1 -2 861 139 1915 194 13 18 chr12 32270269 32270651 -111515804 + MER65C LTR ERV1 82 461 0 * 2005 171 21 16 chr12 32271161 32271587 -111514868 + L1M4c LINE L1 834 1261 -5123 1490 159 0 4 chr12 32271705 32271932 -111514523 - L1P3 LINE L1 -6226 235 10 684 230 9 74 chr12 32272178 32272395 -111514060 - LTR26 LTR ERV1 0 603 401 2899 152 19 6 chr12 32272399 32272912 -111513543 - L1PA10 LINE L1 0 6168 5649 420 226 0 0 chr12 32273019 32273174 -111513281 + C-rich Low_complexity Low_complexity 1 155 0 3243 175 23 65 chr12 32273334 32274077 -111512378 + MER34B-int LTR ERV1 5887 6598 0 342 0 0 0 chr12 32274137 32274175 -111512280 + (CA)n Simple_repeat Simple_repeat 1 38 0 1839 64 8 0 chr12 32274516 32274750 -111511705 + L1PA7 LINE L1 5919 6154 0 403 275 0 40 chr12 32275042 32275191 -111511264 + AluJo SINE Alu 1 143 -159 682 160 50 0 chr12 32375586 32375705 -111410750 + FLAM_C SINE Alu 1 125 -18 798 269 105 61 chr12 32375771 32376277 -111410178 - MLT1K LTR MaLR -4 584 57 2280 105 0 0 chr12 32376374 32376668 -111409787 + AluSx SINE Alu 1 294 -18 2205 130 55 0 chr12 32376769 32377114 -111409341 - THE1B LTR MaLR 0 364 1 248 208 0 56 chr12 32377377 32377449 -111409006 + MIR3 SINE MIR 133 200 -8 2427 79 7 0 chr12 32377787 32378090 -111408365 + AluSq SINE Alu 6 310 -3 2230 94 3 29 chr12 32378597 32378906 -111407549 - AluSq SINE Alu -12 301 1 453 123 0 0 chr12 32379165 32379230 -111407225 + MER92B LTR ERV1 1 65 -571 2040 52 0 12 chr12 32379233 32379481 -111406974 + AluY SINE Alu 57 301 -10 2237 112 6 10 chr12 32379492 32379838 -111406617 + AluSx SINE Alu 1 345 0 2018 209 87 27 chr12 32379838 32380388 -111406067 + MER92B LTR ERV1 54 636 0 751 293 35 4 chr12 32380566 32380798 -111405657 - MIR SINE MIR -18 244 6 355 228 105 18 chr12 32380938 32381052 -111405403 + MER34B LTR ERV1 1 124 -441 2955 93 42 9 chr12 32381147 32381192 -111405263 - MLT2A1 LTR ERVL 0 444 402 672 99 0 0 chr12 32381192 32381303 -111405152 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 2955 93 42 9 chr12 32381303 32381687 -111404768 - MLT2A1 LTR ERVL -42 402 1 527 267 35 53 chr12 32381687 32381972 -111404483 + MER34B LTR ERV1 286 565 0 1197 249 61 32 chr12 32381973 32382383 -111404072 + MER90 LTR ERV1 106 527 -87 2302 97 13 3 chr12 32382589 32382898 -111403557 - AluSx SINE Alu 0 312 1 780 169 0 0 chr12 32383257 32383387 -111403068 + FRAM SINE Alu 38 167 -9 2403 90 40 3 chr12 32383387 32383733 -111402722 + L1PA11 LINE L1 5814 6172 -2 2239 114 3 0 chr12 32383733 32384031 -111402424 + AluSq SINE Alu 1 299 -14 434 132 44 0 chr12 32384034 32384102 -111402353 - MLT1A2 LTR MaLR -303 71 1 1560 160 4 0 chr12 32384126 32384389 -111402066 - L1MA6 LINE L1 0 6300 6037 2267 99 0 10 chr12 32384403 32384707 -111401748 + AluSx SINE Alu 1 301 -11 1653 163 52 28 chr12 32384911 32385200 -111401255 + AluJb SINE Alu 1 296 -16 192 125 0 0 chr12 32385300 32385332 -111401123 + (TTTCC)n Simple_repeat Simple_repeat 3 34 0 1042 174 30 52 chr12 32385342 32385572 -111400883 - AluJb SINE Alu -3 309 85 2099 102 7 14 chr12 32385612 32385895 -111400560 - AluSx SINE Alu -31 281 1 485 223 7 4 chr12 32385900 32386028 -111400427 - MSTC LTR MaLR -48 379 220 788 164 7 14 chr12 32386148 32386288 -111400167 - FLAM_C SINE Alu -4 139 1 2237 100 3 7 chr12 32386399 32386699 -111399756 + AluSg SINE Alu 3 301 -9 1678 152 65 7 chr12 32386705 32386813 -111399642 + AluJb SINE Alu 11 111 -201 338 0 24 0 chr12 32386813 32386855 -111399600 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1678 152 65 7 chr12 32386855 32387022 -111399433 + AluJb SINE Alu 111 302 -10 417 39 0 0 chr12 32387450 32387501 -111398954 + (TTGG)n Simple_repeat Simple_repeat 1 51 0 2157 97 7 0 chr12 32387501 32387780 -111398675 - AluSx SINE Alu -31 281 1 206 204 0 19 chr12 32387945 32387999 -111398456 + CT-rich Low_complexity Low_complexity 4 56 0 2234 131 0 3 chr12 32387999 32388312 -111398143 - AluSx SINE Alu 0 312 1 2040 52 0 12 chr12 32388323 32388571 -111397884 - AluY SINE Alu -10 301 57 453 123 0 0 chr12 32388574 32388639 -111397816 - MER92B LTR ERV1 -571 65 1 2230 94 3 29 chr12 32388898 32389207 -111397248 + AluSq SINE Alu 1 301 -12 2373 89 3 0 chr12 32389714 32390018 -111396437 - AluSq SINE Alu -3 310 6 248 208 0 56 chr12 32390357 32390429 -111396026 - MIR3 SINE MIR -8 200 133 2205 130 55 0 chr12 32390692 32391037 -111395418 + THE1B LTR MaLR 1 364 0 2280 105 0 0 chr12 32391138 32391432 -111395023 - AluSx SINE Alu -18 294 1 545 272 47 27 chr12 32391529 32391713 -111394742 + MLT1K LTR MaLR 57 231 -366 1553 143 31 8 chr12 32392003 32392261 -111394194 - L1PA16 LINE L1 -2 6164 5901 347 275 93 65 chr12 32392291 32392441 -111394014 + L1ME4a LINE L1 5751 5895 -226 1464 204 26 16 chr12 32392441 32392750 -111393705 + AluJb SINE Alu 1 312 0 347 275 93 65 chr12 32392750 32392923 -111393532 + L1ME4a LINE L1 5895 6083 -38 2291 94 3 0 chr12 32393186 32393473 -111392982 + AluSx SINE Alu 1 288 -24 394 229 0 0 chr12 32394001 32394084 -111392371 - L1MC5 LINE L1 -72 7889 7807 2142 117 21 0 chr12 32394185 32394476 -111391979 - AluSg SINE Alu -13 297 1 2178 107 3 7 chr12 32394489 32394788 -111391667 - AluSq SINE Alu -15 298 1 25 0 0 0 chr12 32394835 32394860 -111391595 + AT_rich Low_complexity Low_complexity 1 25 0 1759 171 33 10 chr12 32394892 32395197 -111391258 + AluJb SINE Alu 1 312 0 1585 189 3 20 chr12 32395681 32395982 -111390473 - AluJo SINE Alu -16 296 1 22 70 0 0 chr12 32396167 32396210 -111390245 + AT_rich Low_complexity Low_complexity 1 43 0 2290 102 5 18 chr12 32396312 32396836 -111389619 - L1PA10 LINE L1 0 6168 5570 45404 34 5 2 chr12 32396849 32402988 -111383467 - L1PA4 LINE L1 -3 6152 1 2057 139 10 0 chr12 32402989 32403284 -111383171 - AluSx SINE Alu -14 298 1 428 114 0 102 chr12 32403379 32403467 -111382988 + FLAM_C SINE Alu 63 141 -2 432 265 88 74 chr12 32403605 32404140 -111382315 + HAL1b LINE L1 1193 1346 -2 1592 131 0 13 chr12 32404160 32404389 -111382066 - AluJb SINE Alu -11 301 76 180 0 0 0 chr12 32404597 32404617 -111381838 + (A)n Simple_repeat Simple_repeat 1 20 0 721 152 30 23 chr12 32404709 32404841 -111381614 + FRAM SINE Alu 24 156 -20 2226 236 87 47 chr12 32406773 32407710 -111378745 + L2 LINE L2 2111 3088 -225 735 211 0 0 chr12 32408123 32408256 -111378199 + FLAM_A SINE Alu 1 133 0 250 193 70 0 chr12 32408492 32408549 -111377906 - L2 LINE L2 -4 3268 3208 254 236 11 45 chr12 32408693 32408782 -111377673 - L2 LINE L2 -2 3311 3226 22 0 0 0 chr12 32409085 32409107 -111377348 + AT_rich Low_complexity Low_complexity 1 22 0 2016 105 3 18 chr12 32409108 32409394 -111377061 + AluSp SINE Alu 1 282 -31 252 59 0 0 chr12 32409398 32409432 -111377023 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr12 32410430 32410454 -111376001 + AT_rich Low_complexity Low_complexity 1 24 0 1999 161 0 3 chr12 32410615 32410914 -111375541 + AluSx SINE Alu 1 298 -14 1835 145 3 0 chr12 32411342 32411665 -111374790 - AluJb SINE Alu 0 324 1 383 164 16 0 chr12 32411810 32411871 -111374584 + MLT1F LTR MaLR 1 62 -480 1237 188 62 5 chr12 32411902 32412126 -111374329 + AluJb SINE Alu 1 237 -75 247 258 106 68 chr12 32412475 32412607 -111373848 + MIR SINE MIR 15 119 -89 1728 175 0 23 chr12 32412637 32412940 -111373515 + AluJb SINE Alu 1 296 -16 989 201 0 0 chr12 32412951 32413115 -111373340 + FAM SINE Alu 1 164 -11 333 0 0 0 chr12 32413116 32413153 -111373302 + (TG)n Simple_repeat Simple_repeat 2 38 0 698 167 0 0 chr12 32413269 32413389 -111373066 + FLAM_C SINE Alu 2 121 -22 26 30 0 0 chr12 32413389 32413422 -111373033 + AT_rich Low_complexity Low_complexity 1 33 0 501 196 0 0 chr12 32413654 32413746 -111372709 + AluSg/x SINE Alu 130 221 -91 589 152 0 19 chr12 32413814 32413919 -111372536 + MER65A LTR ERV1 343 445 0 1097 163 0 0 chr12 32413949 32414115 -111372340 + AluJb SINE Alu 133 298 -14 680 78 0 0 chr12 32414239 32414329 -111372126 + AluSg/x SINE Alu 211 300 -9 289 339 0 16 chr12 32414329 32414456 -111371999 + L2 LINE L2 2623 2747 -567 941 161 0 25 chr12 32414456 32414617 -111371838 + FRAM SINE Alu 10 166 -10 762 127 8 45 chr12 32414651 32414785 -111371670 - FLAM_C SINE Alu -13 130 2 1889 132 132 0 chr12 32414844 32415163 -111371292 + MER46B DNA MER2_type 1 236 0 682 187 8 37 chr12 32415701 32415835 -111370620 - FLAM_A SINE Alu -3 130 1 1868 154 20 10 chr12 32415843 32416148 -111370307 - AluJb SINE Alu -4 308 1 1873 161 3 14 chr12 32416312 32416603 -111369852 + AluSx SINE Alu 1 288 -24 2223 107 0 19 chr12 32416699 32417016 -111369439 + AluY SINE Alu 1 311 0 192 231 15 15 chr12 32417121 32417186 -111369269 - L2 LINE L2 -276 2996 2932 290 297 232 14 chr12 32417210 32417486 -111368969 - L2 LINE L2 -688 2626 2291 1873 169 3 0 chr12 32417579 32417875 -111368580 + AluJb SINE Alu 1 297 -15 1584 136 21 4 chr12 32418462 32418705 -111367750 + AluSx SINE Alu 43 289 -23 237 117 50 17 chr12 32418767 32418827 -111367628 + GA-rich Low_complexity Low_complexity 4 65 0 646 205 0 8 chr12 32419672 32419799 -111366656 - AluJo SINE Alu -102 210 85 182 188 0 0 chr12 32420470 32420502 -111365953 + MIR SINE MIR 81 112 -150 1034 104 0 0 chr12 32420661 32420795 -111365660 + AluSq/x SINE Alu 1 134 -179 2046 139 7 7 chr12 32420796 32421105 -111365350 + AluSx SINE Alu 1 309 -3 634 137 8 16 chr12 32421374 32421498 -111364957 + (TCTA)n Simple_repeat Simple_repeat 1 123 0 613 163 43 0 chr12 32421496 32421612 -111364843 - FLAM_A SINE Alu -23 119 6 * 4244 103 44 8 chr12 32421653 32422265 -111364190 + MER51A LTR ERV1 1 634 0 326 285 16 41 chr12 32422532 32422618 -111363837 + MIR SINE MIR 72 156 -106 2504 81 10 0 chr12 32422618 32422927 -111363528 - AluSx SINE Alu 0 312 1 326 285 16 41 chr12 32422927 32422963 -111363492 + MIR SINE MIR 156 191 -71 872 137 0 0 chr12 32423833 32423950 -111362505 + FLAM_C SINE Alu 1 117 -26 29 0 0 0 chr12 32423958 32423987 -111362468 + AT_rich Low_complexity Low_complexity 1 29 0 559 102 204 0 chr12 32424908 32424996 -111361459 + AluSg SINE Alu 9 114 -196 560 154 11 33 chr12 32425012 32425194 -111361261 + G-rich Low_complexity Low_complexity 1 178 0 183 80 0 0 chr12 32425209 32425234 -111361221 + (GAAAA)n Simple_repeat Simple_repeat 5 29 0 2262 124 0 0 chr12 32425918 32426224 -111360231 + AluSx SINE Alu 1 306 -6 1037 132 198 5 chr12 32427236 32427433 -111359022 - MER46A DNA MER2_type 0 236 2 439 138 0 0 chr12 32427511 32427576 -111358879 - MER46A DNA MER2_type -170 66 2 2009 159 7 0 chr12 32427626 32427921 -111358534 + AluSx SINE Alu 1 297 -15 885 212 11 0 chr12 32427931 32428110 -111358345 + L1MC/D LINE L1 5444 5624 -2161 * 1550 148 79 69 chr12 32428099 32428301 -111358154 + L1MC3 LINE L1 7346 7545 -240 2635 116 11 3 chr12 32428301 32428673 -111357782 + THE1C LTR MaLR 1 375 0 1550 148 79 69 chr12 32428673 32428709 -111357746 + L1MC3 LINE L1 7545 7579 -206 2279 116 3 0 chr12 32428709 32429020 -111357435 + AluSq SINE Alu 1 312 -1 1550 148 79 69 chr12 32429020 32429184 -111357271 + L1MC3 LINE L1 7579 7753 -32 2374 86 7 0 chr12 32429253 32429556 -111356899 + AluSg SINE Alu 2 306 -4 1839 153 32 0 chr12 32430495 32430776 -111355679 + AluJb SINE Alu 1 290 -22 380 272 213 30 chr12 32432024 32432292 -111354163 + MLT1J2 LTR MaLR 112 432 -18 2124 128 10 3 chr12 32432458 32432755 -111353700 - AluSx SINE Alu -13 299 1 198 0 0 0 chr12 32433038 32433060 -111353395 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1687 171 11 18 chr12 32433061 32433347 -111353108 - AluJb SINE Alu -23 289 6 29 0 0 0 chr12 32433493 32433522 -111352933 + AT_rich Low_complexity Low_complexity 1 29 0 778 69 0 0 chr12 32433522 32433623 -111352832 - HY3 scRNA scRNA 0 101 1 1346 271 84 58 chr12 32433698 32434391 -111352064 - MER21B LTR ERV1 -129 734 24 815 217 123 25 chr12 32434418 32434653 -111351802 - AluJo SINE Alu -54 258 1 212 299 37 52 chr12 32436357 32436491 -111349964 + L2 LINE L2 2264 2395 -919 341 170 0 0 chr12 32436557 32436610 -111349845 + Alu SINE Alu 1 53 -250 612 200 82 7 chr12 32436641 32436776 -111349679 + FRAM SINE Alu 20 164 -12 315 186 0 29 chr12 32436783 32436853 -111349602 + MLT1G1 LTR MaLR 486 593 -2 518 256 111 56 chr12 32436855 32437089 -111349366 - L2 LINE L2 -71 3242 2996 680 241 21 21 chr12 32437331 32437518 -111348937 - MLT1E2 LTR MaLR 0 654 468 1135 148 0 0 chr12 32437533 32437702 -111348753 - AluSg/x SINE Alu -10 302 134 1009 229 111 28 chr12 32437702 32438111 -111348344 - MLT1E2 LTR MaLR -185 439 1 1993 125 3 30 chr12 32438168 32438471 -111347984 + AluJo SINE Alu 1 295 -17 231 230 176 54 chr12 32438904 32438978 -111347477 + L2 LINE L2 3190 3272 0 22 56 0 0 chr12 32439087 32439123 -111347332 + AT_rich Low_complexity Low_complexity 1 36 0 2332 83 24 0 chr12 32439140 32439430 -111347025 - AluSg SINE Alu -8 302 6 1598 180 0 49 chr12 32439444 32439749 -111346706 - AluJo SINE Alu -22 290 1 4733 158 76 33 chr12 32439976 32441056 -111345399 - L1MC3 LINE L1 0 7785 6656 1917 149 0 33 chr12 32441056 32441358 -111345097 - AluJo SINE Alu -14 298 7 750 218 0 0 chr12 32441461 32441603 -111344852 + Tigger3(Golem) DNA MER2_type 2876 3017 -12 2104 122 3 23 chr12 32441752 32442055 -111344400 + AluSx SINE Alu 1 297 -15 1535 174 60 28 chr12 32442070 32442352 -111344103 + AluJo SINE Alu 3 293 -19 935 187 0 0 chr12 32442377 32442527 -111343928 + FRAM SINE Alu 1 150 -16 21 82 0 0 chr12 32442556 32442605 -111343850 + AT_rich Low_complexity Low_complexity 1 49 0 1689 165 31 21 chr12 32443421 32443712 -111342743 + AluJb SINE Alu 5 298 -14 932 179 0 34 chr12 32443995 32444174 -111342281 + AluJb SINE Alu 129 301 -11 294 267 91 79 chr12 32445469 32445634 -111340821 - MIR3 SINE MIR -11 197 31 995 108 6 18 chr12 32446994 32447160 -111339295 - L1MB7 LINE L1 -8 6176 6013 818 199 139 18 chr12 32447706 32447759 -111338696 - MER33 DNA MER1_type -2272 313 268 2134 99 3 7 chr12 32447759 32448042 -111338413 - AluSc SINE Alu -16 293 12 818 199 139 18 chr12 32448042 32448057 -111338398 - MER33 DNA MER1_type -2317 268 256 219 36 0 0 chr12 32448057 32448085 -111338370 + (CAA)n Simple_repeat Simple_repeat 2 29 0 818 199 139 18 chr12 32448085 32448305 -111338150 - MER33 DNA MER1_type -2329 256 1 748 159 0 36 chr12 32448526 32448664 -111337791 - FLAM_A SINE Alu 0 133 1 381 353 160 12 chr12 32448971 32449430 -111337025 + L2 LINE L2 2565 3087 -185 1398 161 43 18 chr12 32449671 32449950 -111336505 - AluJb SINE Alu -26 286 1 2106 144 0 13 chr12 32450262 32450575 -111335880 - AluSx SINE Alu -3 309 1 534 179 0 0 chr12 32450832 32450927 -111335528 + L1MB5 LINE L1 6080 6174 0 207 0 0 0 chr12 32451252 32451275 -111335180 + (T)n Simple_repeat Simple_repeat 1 23 0 418 235 91 30 chr12 32451432 32451564 -111334891 + MLT1H LTR MaLR 101 240 -309 2088 106 0 11 chr12 32451582 32451864 -111334591 + AluSx SINE Alu 1 279 -33 198 174 0 0 chr12 32451898 32451944 -111334511 + A-rich Low_complexity Low_complexity 1 46 0 1598 233 119 8 chr12 32452146 32452743 -111333712 + L1MD3 LINE L1 5343 6005 -1990 * 2087 173 69 12 chr12 32452403 32452911 -111333544 + L1MB8 LINE L1 5642 6178 0 1641 186 3 10 chr12 32452921 32453212 -111333243 + AluJb SINE Alu 1 289 -23 1612 144 18 0 chr12 32453808 32454085 -111332370 + L1MD3 LINE L1 7697 7978 -17 949 275 153 43 chr12 32454146 32454709 -111331746 - L2 LINE L2 0 3313 2690 2340 95 0 0 chr12 32454709 32455003 -111331452 + AluSg SINE Alu 1 294 -16 949 275 153 43 chr12 32455003 32455033 -111331422 - L2 LINE L2 -623 2690 2665 545 242 21 48 chr12 32455038 32455275 -111331180 + L1MC4 LINE L1 7363 7614 -207 1244 216 145 28 chr12 32455275 32455702 -111330753 - MLT1D LTR MaLR 0 505 29 1159 262 92 52 chr12 32455702 32456091 -111330364 - L2 LINE L2 -701 2613 2204 2283 93 6 6 chr12 32456091 32456403 -111330052 + AluSq SINE Alu 1 312 -1 1159 262 92 52 chr12 32456403 32456436 -111330019 - L2 LINE L2 -1110 2204 2174 891 114 76 0 chr12 32456765 32456896 -111329559 + AluJb SINE Alu 1 141 -171 47 0 0 0 chr12 32456913 32456960 -111329495 + AT_rich Low_complexity Low_complexity 1 47 0 2391 86 0 0 chr12 32457303 32457605 -111328850 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr12 32457823 32457847 -111328608 + AT_rich Low_complexity Low_complexity 1 24 0 2261 99 13 0 chr12 32458405 32458708 -111327747 - AluSx SINE Alu -5 307 1 234 233 45 68 chr12 32459215 32459348 -111327107 - L2 LINE L2 -67 3246 3117 384 327 103 49 chr12 32459704 32460053 -111326402 - L2 LINE L2 -609 2705 2338 390 242 96 35 chr12 32460394 32460592 -111325863 - MER2 DNA MER2_type 0 345 136 1833 104 0 69 chr12 32461369 32461657 -111324798 - AluSx SINE Alu -9 303 36 1265 126 0 0 chr12 32462136 32462311 -111324144 + AluSg/x SINE Alu 131 305 -5 13414 134 40 34 chr12 32462509 32462618 -111323837 + L1MA3 LINE L1 1666 1773 -5951 330 87 0 0 chr12 32462618 32462664 -111323791 + (CA)n Simple_repeat Simple_repeat 2 47 0 13414 134 40 34 chr12 32462664 32463054 -111323401 + L1MA3 LINE L1 1773 2159 -5565 2466 135 41 10 chr12 32463054 32463469 -111322986 + MSTA LTR MaLR 1 428 0 13414 134 40 34 chr12 32463469 32465791 -111320664 + L1MA3 LINE L1 2159 4466 -3258 2206 125 0 6 chr12 32465791 32466102 -111320353 + AluSx SINE Alu 1 309 -3 13414 134 40 34 chr12 32466102 32467577 -111318878 + L1MA3 LINE L1 4466 5931 -1793 1936 149 0 0 chr12 32467577 32467859 -111318596 + AluSx SINE Alu 1 282 -30 13414 134 40 34 chr12 32467859 32469212 -111317243 + L1MA3 LINE L1 5931 7372 -352 2380 90 0 7 chr12 32469212 32469512 -111316943 + AluSg SINE Alu 1 298 -12 13414 134 40 34 chr12 32469512 32469867 -111316588 + L1MA3 LINE L1 7372 7723 -1 1672 174 3 7 chr12 32469884 32470166 -111316289 + AluJb SINE Alu 5 285 -27 1105 151 0 49 chr12 32470235 32470420 -111316035 + AluJb SINE Alu 113 288 -24 2047 121 21 0 chr12 32471094 32471374 -111315081 + AluSx SINE Alu 1 286 -26 22 103 0 0 chr12 32471384 32471462 -111314993 + AT_rich Low_complexity Low_complexity 1 78 0 1869 162 0 10 chr12 32471496 32471792 -111314663 - AluJb SINE Alu -19 293 1 331 248 51 29 chr12 32471819 32471956 -111314499 + L1ME4a LINE L1 5093 5232 -914 393 236 60 51 chr12 32471959 32472234 -111314221 + L1MC5 LINE L1 7261 7498 -463 1588 136 31 8 chr12 32472441 32472699 -111313756 - L1PA16 LINE L1 -2 6164 5901 333 281 93 65 chr12 32472729 32472879 -111313576 + L1ME4a LINE L1 5751 5895 -226 1808 152 29 19 chr12 32472879 32473188 -111313267 + AluJb SINE Alu 1 312 0 333 281 93 65 chr12 32473188 32473361 -111313094 + L1ME4a LINE L1 5895 6083 -38 654 135 0 10 chr12 32473626 32473722 -111312733 + AluS SINE Alu 2 96 -217 2161 86 45 7 chr12 32473822 32474112 -111312343 + AluSq SINE Alu 1 301 -12 2555 58 0 0 chr12 32475153 32475447 -111311008 + AluY SINE Alu 1 294 -17 1201 263 76 40 chr12 32475447 32476029 -111310426 + MER41D-int LTR ERV1 7127 7729 -27 1130 157 0 0 chr12 32476034 32476206 -111310249 + AluSg/x SINE Alu 134 305 -7 2976 198 11 2 chr12 32476239 32476791 -111309664 + MER41D LTR ERV1 1 557 0 435 234 16 8 chr12 32477466 32477594 -111308861 - MIR SINE MIR 0 262 134 1011 106 0 0 chr12 32477605 32477737 -111308718 - FLAM_C SINE Alu -11 132 1 327 272 0 0 chr12 32477744 32477825 -111308630 - MIR SINE MIR -118 144 64 2326 91 0 26 chr12 32477989 32478155 -111308300 - AluSx SINE Alu -13 299 143 2301 111 0 0 chr12 32478155 32478461 -111307994 - AluSx SINE Alu -4 308 3 2326 91 0 26 chr12 32478461 32478601 -111307854 - AluSx SINE Alu -169 143 1 1933 153 3 3 chr12 32478753 32479054 -111307401 - AluJb SINE Alu -11 301 1 1109 102 0 7 chr12 32479327 32479474 -111306981 - AluSq/x SINE Alu -164 148 3 566 226 9 0 chr12 32479476 32479591 -111306864 - MLT2B2 LTR ERVL -399 116 1 1576 146 3 93 chr12 32479786 32480107 -111306348 - AluJb SINE Alu -20 292 1 216 0 0 0 chr12 32480107 32480131 -111306324 + (T)n Simple_repeat Simple_repeat 1 24 0 442 238 79 38 chr12 32480175 32480411 -111306044 + MIR SINE MIR 9 248 -14 1884 153 0 0 chr12 32481036 32481351 -111305104 - AluSx SINE Alu 0 315 1 1273 189 5 0 chr12 32481351 32481573 -111304882 - AluJb SINE Alu -5 307 85 632 171 23 54 chr12 32481573 32481702 -111304753 - AluJo SINE Alu -177 135 11 546 271 33 17 chr12 32482113 32482294 -111304161 + MIR SINE MIR 14 197 -65 2158 105 0 7 chr12 32482306 32482601 -111303854 + AluSx SINE Alu 20 312 0 2001 157 6 14 chr12 32482602 32482947 -111303508 + L1MB8 LINE L1 5488 5829 -355 756 171 171 0 chr12 32482947 32483099 -111303356 + MER2 DNA MER2_type 1 178 -167 2303 93 0 35 chr12 32483101 32483294 -111303161 - AluSg SINE Alu -11 299 120 2500 68 7 0 chr12 32483294 32483601 -111302854 - AluY SINE Alu -2 309 1 2303 93 0 35 chr12 32483601 32483717 -111302738 - AluSg SINE Alu -190 120 1 1103 105 149 6 chr12 32483727 32483908 -111302547 - AluSg/x SINE Alu -21 289 83 848 126 86 26 chr12 32483908 32484059 -111302396 + MER2 DNA MER2_type 186 345 0 418 151 116 0 chr12 32484059 32484145 -111302310 + L1MB8 LINE L1 5828 5923 -255 1387 125 37 148 chr12 32484145 32484496 -111301959 + Tigger1 DNA MER2_type 1 312 -2106 1992 146 44 0 chr12 32484496 32484791 -111301664 - AluSx SINE Alu -4 308 1 3625 109 45 6 chr12 32484795 32485328 -111301127 + MER41A LTR ERV1 1 554 0 434 242 23 45 chr12 32485332 32485464 -111300991 - L2 LINE L2 -570 2744 2616 542 231 30 59 chr12 32485465 32485571 -111300884 + MER34 LTR ERV1 1 102 -440 2425 135 94 2 chr12 32485571 32485985 -111300470 - LTR47A LTR ERVL 0 452 1 542 231 30 59 chr12 32485985 32486047 -111300408 + MER34 LTR ERV1 102 164 -378 2270 77 0 68 chr12 32486047 32486371 -111300084 - AluSx SINE Alu -10 302 1 4179 123 3 10 chr12 32486498 32487114 -111299341 + LTR9 LTR ERV1 1 612 0 746 231 57 57 chr12 32487122 32487403 -111299052 + MER34 LTR ERV1 257 537 -5 434 242 97 0 chr12 32487407 32487531 -111298924 - L2 LINE L2 -696 2618 2483 2206 100 3 3 chr12 32487666 32487966 -111298489 + AluSx SINE Alu 1 300 -12 2328 107 0 0 chr12 32488405 32488713 -111297742 + AluSx SINE Alu 1 308 -4 260 224 0 0 chr12 32488778 32488827 -111297628 + L1MA10 LINE L1 6199 6247 -87 1182 186 71 108 chr12 32488827 32489236 -111297219 + LTR34 LTR ERV1 1 394 -305 945 160 11 17 chr12 32490863 32491038 -111295417 + FAM SINE Alu 1 174 -1 1764 154 7 18 chr12 32491038 32491368 -111295087 + AluJb SINE Alu 6 332 0 2180 122 10 0 chr12 32491381 32491684 -111294771 + AluSx SINE Alu 1 306 -6 1664 147 19 51 chr12 32492748 32493062 -111293393 + AluSx SINE Alu 1 304 -8 861 207 6 6 chr12 32493067 32493241 -111293214 + AluJb SINE Alu 138 311 -1 1951 125 3 20 chr12 32493244 32493539 -111292916 + AluSx SINE Alu 1 290 -22 244 138 0 35 chr12 32493550 32493608 -111292847 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 1722 152 10 62 chr12 32493676 32493985 -111292470 + AluJo SINE Alu 1 293 -19 24 67 0 0 chr12 32494453 32494498 -111291957 + AT_rich Low_complexity Low_complexity 1 45 0 2598 56 0 3 chr12 32494503 32494807 -111291648 + AluY SINE Alu 1 303 -8 1873 166 0 10 chr12 32494912 32495220 -111291235 + AluJb SINE Alu 1 305 -7 284 234 211 0 chr12 32495869 32495997 -111290458 + MIR SINE MIR 32 186 -76 1887 145 16 7 chr12 32496448 32496707 -111289748 + AluSx SINE Alu 1 265 -47 210 37 0 0 chr12 32496707 32496734 -111289721 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1887 145 16 7 chr12 32496734 32496778 -111289677 + AluSx SINE Alu 265 307 -5 346 185 11 11 chr12 32496778 32496870 -111289585 + GA-rich Low_complexity Low_complexity 3 94 0 31 0 0 0 chr12 32497027 32497058 -111289397 + AT_rich Low_complexity Low_complexity 1 31 0 586 147 0 20 chr12 32497549 32497651 -111288804 - AluJb SINE Alu 0 312 213 1273 189 5 0 chr12 32497784 32498006 -111288449 + AluJb SINE Alu 85 307 -5 1885 153 0 0 chr12 32498006 32498321 -111288134 + AluSx SINE Alu 1 315 0 442 238 79 38 chr12 32498946 32499182 -111287273 - MIR SINE MIR -14 248 9 216 0 0 0 chr12 32499226 32499250 -111287205 + (A)n Simple_repeat Simple_repeat 1 24 0 1506 146 3 99 chr12 32499250 32499573 -111286882 + AluJb SINE Alu 1 292 -20 566 226 9 0 chr12 32499768 32499883 -111286572 + MLT2B1 LTR ERVL 1 116 -404 1109 102 0 7 chr12 32499885 32500032 -111286423 + AluSq/x SINE Alu 3 148 -165 1933 153 3 3 chr12 32500305 32500606 -111285849 + AluJb SINE Alu 1 301 -11 1062 88 0 22 chr12 32500758 32500895 -111285560 + AluSq/x SINE Alu 1 134 -178 1926 143 0 22 chr12 32500897 32501211 -111285244 + AluSx SINE Alu 3 309 -3 642 138 51 174 chr12 32501230 32501426 -111285029 - LTR54 LTR ERV1 -193 317 146 3076 145 32 0 chr12 32501511 32502007 -111284448 + MER41E LTR ERV1 1 512 0 751 163 28 14 chr12 32502011 32502152 -111284303 - LTR54 LTR ERV1 -367 143 1 474 64 167 0 chr12 32502298 32502376 -111284079 - MER21A LTR ERV1 -27 904 814 800 164 21 14 chr12 32502405 32502545 -111283910 + AluJb SINE Alu 149 289 -23 1308 165 91 8 chr12 32502601 32502844 -111283611 - MER21B LTR ERV1 -138 725 463 884 145 8 0 chr12 32502845 32502976 -111283479 + AluSg/x SINE Alu 148 279 -33 192 77 0 0 chr12 32502976 32503002 -111283453 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 2257 99 0 0 chr12 32503003 32503287 -111283168 + AluSc SINE Alu 1 284 -25 2531 162 73 7 chr12 32503294 32503733 -111282722 - MER21B LTR ERV1 -395 468 1 180 0 0 0 chr12 32505256 32505276 -111281179 + (T)n Simple_repeat Simple_repeat 1 20 0 330 269 11 11 chr12 32507166 32507259 -111279196 - MIR SINE MIR -169 93 1 772 98 46 23 chr12 32507276 32507449 -111279006 + CT-rich Low_complexity Low_complexity 2 178 0 1453 142 14 142 chr12 32507461 32507688 -111278767 - AluJo SINE Alu -1 301 131 2496 87 0 0 chr12 32507688 32507999 -111278456 - AluY SINE Alu 0 311 1 1453 142 14 142 chr12 32507999 32508115 -111278340 - AluJo SINE Alu -171 131 2 629 217 103 53 chr12 32508432 32508679 -111277776 + MLT1H1 LTR MaLR 42 281 -261 716 144 72 50 chr12 32509178 32509317 -111277138 - FLAM_C SINE Alu 0 143 2 2243 123 0 0 chr12 32509495 32509795 -111276660 - AluSx SINE Alu -12 300 1 35 24 0 0 chr12 32509804 32509846 -111276609 + AT_rich Low_complexity Low_complexity 1 42 0 2258 87 0 16 chr12 32509846 32510156 -111276299 - AluY SINE Alu -6 305 1 2116 136 3 7 chr12 32510158 32510467 -111275988 - AluSx SINE Alu 0 312 5 360 191 11 157 chr12 32510477 32510655 -111275800 + L1MC5 LINE L1 7765 7916 -45 726 186 0 0 chr12 32511462 32511586 -111274869 - AluJ SINE Alu -1 311 188 1312 33 0 0 chr12 32511623 32511774 -111274681 - L1PA3 LINE L1 -3 6152 6002 2511 76 6 3 chr12 32511777 32512319 -111274136 - LTR10E LTR ERV1 -12 621 1 1197 176 0 0 chr12 32512321 32512509 -111273946 - AluJ SINE Alu -120 192 5 21 57 0 0 chr12 32512569 32512604 -111273851 + AT_rich Low_complexity Low_complexity 1 35 0 617 190 17 0 chr12 32512604 32512720 -111273735 - FLAM_C SINE Alu -11 122 5 2284 181 36 5 chr12 32512905 32513326 -111273129 - Tigger2a DNA MER2_type 0 434 1 2423 92 0 16 chr12 32513355 32513670 -111272785 - AluSq SINE Alu -3 310 1 697 152 9 0 chr12 32513670 32513782 -111272673 - FLAM_A SINE Alu -12 130 18 580 176 0 64 chr12 32513822 32513947 -111272508 + FLAM_C SINE Alu 13 129 -14 401 133 0 16 chr12 32513981 32514221 -111272234 + AluSx SINE Alu 1 310 0 539 144 63 0 chr12 32514251 32514362 -111272093 + L1MA8 LINE L1 6174 6291 0 2071 167 25 11 chr12 32515383 32515743 -111270712 + MLT1A1 LTR MaLR 1 365 0 1431 217 65 0 chr12 32515878 32515995 -111270460 + AluJb SINE Alu 1 109 -203 282 29 0 0 chr12 32515995 32516030 -111270425 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 1431 217 65 0 chr12 32516030 32516202 -111270253 + AluJb SINE Alu 109 309 -3 1222 134 0 0 chr12 32516225 32516397 -111270058 + AluSg/x SINE Alu 138 309 -1 949 181 6 17 chr12 32516674 32516851 -111269604 - AluJ SINE Alu -5 307 133 240 179 128 39 chr12 32516928 32517006 -111269449 + L2 LINE L2 3229 3313 0 2218 131 0 6 chr12 32517321 32517633 -111268822 - AluSx SINE Alu -2 310 1 39 0 0 0 chr12 32517754 32517793 -111268662 + AT_rich Low_complexity Low_complexity 1 39 0 734 176 48 0 chr12 32517794 32517919 -111268536 - AluJ SINE Alu -181 131 1 344 265 93 12 chr12 32517931 32518093 -111268362 - L1MC/D LINE L1 -2048 5760 5586 2395 84 0 7 chr12 32518210 32518509 -111267946 + AluSg SINE Alu 1 297 -13 704 90 10 0 chr12 32518612 32518712 -111267743 + AluY SINE Alu 2 102 -209 1996 120 3 10 chr12 32518835 32519134 -111267321 + AluSg SINE Alu 1 297 -13 2186 88 0 41 chr12 32519236 32519553 -111266902 + AluY SINE Alu 1 304 -7 2530 69 0 0 chr12 32519607 32519910 -111266545 - AluY SINE Alu -8 303 1 637 297 87 45 chr12 32519992 32520349 -111266106 - MLT1K LTR MaLR -18 570 199 2285 118 3 0 chr12 32520847 32521153 -111265302 - AluSx SINE Alu -5 307 1 854 138 0 0 chr12 32521294 32521410 -111265045 + FLAM_C SINE Alu 2 117 -26 365 0 22 0 chr12 32521418 32521463 -111264992 + (CAA)n Simple_repeat Simple_repeat 2 47 0 1933 205 19 51 chr12 32521784 32522258 -111264197 - MLT1C LTR MaLR -3 464 6 2113 114 3 3 chr12 32522353 32522643 -111263812 - AluSx SINE Alu -18 294 5 1096 182 43 66 chr12 32523009 32523147 -111263308 + AluJo SINE Alu 1 132 -180 1772 155 24 7 chr12 32523147 32523451 -111263004 + AluJb SINE Alu 1 302 -10 1096 182 43 66 chr12 32523451 32523570 -111262885 + AluJo SINE Alu 132 252 -60 339 99 28 42 chr12 32523966 32524037 -111262418 + AluSp/q SINE Alu 233 302 -1 614 299 116 9 chr12 32524087 32524311 -111262144 - MIR SINE MIR 0 262 15 360 64 0 0 chr12 32524539 32524586 -111261869 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 851 197 0 0 chr12 32524586 32524733 -111261722 - AluJb SINE Alu -32 280 134 1629 226 53 27 chr12 32524733 32524768 -111261687 - L1ME1 LINE L1 -11 6155 6122 2326 84 0 0 chr12 32524768 32525064 -111261391 + AluSx SINE Alu 1 296 -16 1629 226 53 27 chr12 32525064 32525440 -111261015 - L1ME1 LINE L1 -44 6122 5733 306 188 50 40 chr12 32525445 32525546 -111260909 - LTR41 LTR ERVL -16 757 656 1520 143 0 19 chr12 32525546 32525804 -111260651 + AluJb SINE Alu 11 263 -49 605 125 0 80 chr12 32526827 32526916 -111259539 + U5 snRNA snRNA 1 81 -35 2149 107 3 0 chr12 32526916 32527216 -111259239 - AluSq SINE Alu -12 301 1 605 125 0 80 chr12 32527216 32527238 -111259217 + U5 snRNA snRNA 81 103 -13 2052 110 16 13 chr12 32527268 32527578 -111258877 - AluSx SINE Alu -1 311 1 182 331 71 55 chr12 32527670 32527797 -111258658 - L2 LINE L2 -5 3267 3139 2138 92 10 7 chr12 32527902 32528206 -111258249 - AluSc SINE Alu -4 305 1 21 57 0 0 chr12 32528214 32528249 -111258206 + AT_rich Low_complexity Low_complexity 1 35 0 347 56 19 74 chr12 32528249 32528303 -111258152 - AluSg/x SINE Alu -169 131 85 1011 206 18 14 chr12 32528304 32528523 -111257932 - AluJo SINE Alu -92 220 1 732 134 24 31 chr12 32528793 32528920 -111257535 + FLAM_C SINE Alu 2 127 -16 648 161 0 66 chr12 32528942 32529079 -111257376 - FLAM_C SINE Alu -5 128 1 28 29 0 0 chr12 32529824 32529859 -111256596 + GC_rich Low_complexity Low_complexity 1 35 0 28 79 0 0 chr12 32529962 32530025 -111256430 + GC_rich Low_complexity Low_complexity 1 63 0 25 0 0 0 chr12 32530160 32530185 -111256270 + GC_rich Low_complexity Low_complexity 1 25 0 2523 223 98 42 chr12 32532173 32532307 -111254148 - L2 LINE L2 -2 3311 3186 1596 173 48 21 chr12 32532307 32532642 -111253813 + MER2 DNA MER2_type 1 344 0 2523 223 98 42 chr12 32532642 32533190 -111253265 - L2 LINE L2 -127 3186 2670 2058 106 10 7 chr12 32533190 32533482 -111252973 + AluSx SINE Alu 1 293 -19 2523 223 98 42 chr12 32533482 32534017 -111252438 - L2 LINE L2 -643 2670 2022 26 50 0 0 chr12 32534480 32534520 -111251935 + AT_rich Low_complexity Low_complexity 1 40 0 1913 137 60 117 chr12 32535803 32536185 -111250270 + MSTB1 LTR MaLR 6 360 -72 1514 150 17 51 chr12 32536185 32536478 -111249977 - AluJo SINE Alu -29 283 1 1913 137 60 117 chr12 32536478 32536548 -111249907 + MSTB1 LTR MaLR 360 432 0 254 247 0 56 chr12 32536718 32536807 -111249648 + GA-rich Low_complexity Low_complexity 6 89 0 357 227 42 214 chr12 32537232 32537304 -111249151 - MIR SINE MIR -3 259 176 2024 129 0 3 chr12 32537304 32537613 -111248842 - AluSx SINE Alu -4 308 1 357 227 42 214 chr12 32537613 32537698 -111248757 - MIR SINE MIR -86 176 179 2171 101 0 0 chr12 32537698 32537996 -111248459 - AluSg SINE Alu -12 298 1 357 227 42 214 chr12 32537996 32538150 -111248305 - MIR SINE MIR -82 180 1 180 221 255 90 chr12 32538612 32538757 -111247698 + MIR3 SINE MIR 1 169 -39 1372 210 76 34 chr12 32538871 32539199 -111247256 - MER2 DNA MER2_type -1 343 2 2067 93 20 13 chr12 32539295 32539596 -111246859 - AluSp SINE Alu -10 303 1 1661 145 28 25 chr12 32539903 32540185 -111246270 - AluJb SINE Alu -29 283 1 336 192 40 50 chr12 32540214 32540313 -111246142 + AluY SINE Alu 1 98 -210 854 97 0 0 chr12 32540604 32540717 -111245738 + AluSg/x SINE Alu 180 292 -18 2389 24 41 0 chr12 32541178 32541469 -111244986 - AluY SINE Alu -8 303 1 534 309 166 23 chr12 32541782 32542167 -111244288 - L1ME4a LINE L1 -61 6060 5621 2246 101 0 0 chr12 32542170 32542467 -111243988 + AluSx SINE Alu 1 297 -15 566 189 186 21 chr12 32542475 32542745 -111243710 + MLT1G LTR MaLR 1 306 -284 233 295 39 0 chr12 32542844 32542922 -111243533 + MLT1G LTR MaLR 411 491 -58 1512 207 8 4 chr12 32542924 32543190 -111243265 + Tigger4(Zombi) DNA MER2_type 2 268 -2463 1084 113 74 109 chr12 32543192 32543233 -111243222 + Tigger4(Zombi) DNA MER2_type 2510 2551 -180 1305 230 0 63 chr12 32543233 32543385 -111243070 + AluJb SINE Alu 1 124 -178 1817 168 3 0 chr12 32543385 32543689 -111242766 + AluSx SINE Alu 1 305 -7 1305 230 0 63 chr12 32543689 32543854 -111242601 + AluJb SINE Alu 124 298 -4 1084 113 74 109 chr12 32543854 32544042 -111242413 + Tigger4(Zombi) DNA MER2_type 2551 2731 0 2006 123 0 7 chr12 32544444 32544745 -111241710 + AluSx SINE Alu 1 299 -13 825 184 53 0 chr12 32544759 32544911 -111241544 + FRAM SINE Alu 4 163 -13 2266 95 0 0 chr12 32544975 32545271 -111241184 - AluSq SINE Alu -17 296 1 2148 114 0 0 chr12 32545417 32545725 -111240730 + AluSx SINE Alu 1 308 -4 1260 96 0 0 chr12 32545725 32545891 -111240564 + AluSg/x SINE Alu 132 297 -13 365 271 20 6 chr12 32546038 32546138 -111240317 + MIR SINE MIR 52 147 -61 956 106 0 0 chr12 32546143 32546275 -111240180 + FLAM_C SINE Alu 1 132 -11 492 234 16 8 chr12 32546286 32546414 -111240041 + MIR SINE MIR 134 262 0 917 187 81 135 chr12 32547189 32547537 -111238918 - LTR34 LTR ERV1 -370 329 1 430 221 0 1 chr12 32547569 32547653 -111238802 - L1ME4a LINE L1 -599 5567 5486 2005 98 0 54 chr12 32547653 32547970 -111238485 - AluSc SINE Alu -9 300 1 380 319 36 0 chr12 32548000 32548138 -111238317 + PRIMA41-int LTR ERV1 6321 6463 -1293 2161 94 3 0 chr12 32548747 32549034 -111237421 + AluSx SINE Alu 1 288 -24 1016 99 81 0 chr12 32550699 32550860 -111235595 - AluSp SINE Alu -12 301 128 28 29 0 0 chr12 32550959 32550994 -111235461 + GC_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr12 32551114 32551149 -111235306 + GC_rich Low_complexity Low_complexity 1 35 0 28 79 0 0 chr12 32551212 32551275 -111235180 + GC_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr12 32551348 32551372 -111235083 + GC_rich Low_complexity Low_complexity 1 24 0 2471 197 84 14 chr12 32601510 32602736 -111183719 - L1PBa LINE L1 -5069 1794 303 2372 102 0 0 chr12 32602736 32603039 -111183416 - AluSg SINE Alu -7 303 1 2471 197 84 14 chr12 32603039 32603244 -111183211 - L1PBa LINE L1 -6560 303 114 21 0 0 0 chr12 32603304 32603325 -111183130 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr12 32603385 32603420 -111183035 + AT_rich Low_complexity Low_complexity 1 35 0 248 324 29 19 chr12 32604281 32604386 -111182069 + MIR SINE MIR 37 142 -66 2283 151 50 24 chr12 32606120 32606543 -111179912 + Tigger2a DNA MER2_type 1 434 0 390 91 0 0 chr12 32606817 32606872 -111179583 + (CA)n Simple_repeat Simple_repeat 1 55 0 251 97 48 16 chr12 32606966 32607028 -111179427 + (TA)n Simple_repeat Simple_repeat 1 64 0 246 189 18 117 chr12 32607765 32607876 -111178579 - L2 LINE L2 -77 3236 3137 187 369 39 39 chr12 32609239 32609342 -111177113 + L2 LINE L2 3137 3239 -33 202 189 19 19 chr12 32609685 32609738 -111176717 + (TA)n Simple_repeat Simple_repeat 1 53 0 990 238 30 5 chr12 32609830 32610076 -111176379 - MIR SINE MIR 0 262 14 395 325 57 64 chr12 32610195 32610460 -111175995 + L3 LINE CR1 1216 1478 -99 2025 126 0 68 chr12 32610525 32610851 -111175604 - AluSx SINE Alu -7 305 2 4642 153 24 51 chr12 32610921 32610975 -111175480 + L1MB3 LINE L1 5056 5110 -1073 6303 89 8 2 chr12 32610975 32611947 -111174508 + L1PA13 LINE L1 5168 6146 -17 4642 153 24 51 chr12 32611947 32613051 -111173404 + L1MB3 LINE L1 5110 6182 -1 1906 180 0 0 chr12 32613644 32613938 -111172517 - AluJb SINE Alu -18 294 1 898 201 100 80 chr12 32614419 32614768 -111171687 + MER76 LTR ERV 331 686 -2 10298 174 96 15 chr12 32614792 32617462 -111168993 + L1M4c LINE L1 19 2909 -3473 2573 176 16 26 chr12 32617463 32618071 -111168384 + pTR5 LTR ERV1 743 1344 -1094 4264 123 15 126 chr12 32618087 32619009 -111167446 + LTR12 LTR ERV1 5 824 -2 636 266 76 11 chr12 32619013 32619288 -111167167 + L1M4c LINE L1 2914 3206 -3176 284 169 56 14 chr12 32619506 32619577 -111166878 + L1M4c LINE L1 3207 3280 -3102 * 1579 223 14 7 chr12 32619570 32619997 -111166458 + L1M4c LINE L1 3525 3954 -2428 376 168 9 97 chr12 32620409 32620522 -111165933 - MER53 DNA DNA -82 107 5 1645 233 45 31 chr12 32621352 32621841 -111164614 + L2 LINE L2 1557 2052 -1262 381 262 62 111 chr12 32621938 32622342 -111164113 - MLT1H LTR MaLR -165 384 1 614 176 17 25 chr12 32622401 32622520 -111163935 - FLAM_A SINE Alu -12 121 4 2597 263 100 17 chr12 32622532 32623591 -111162864 + L2 LINE L2 2074 3220 -93 231 277 75 75 chr12 32623686 32623968 -111162487 - MLT1J LTR MaLR 0 511 230 1935 126 3 11 chr12 32624262 32624548 -111161907 + AluSq SINE Alu 1 284 -29 984 219 44 133 chr12 32624947 32625467 -111160988 + L1MC4 LINE L1 7138 7611 -431 1247 199 25 21 chr12 32625467 32625708 -111160747 + Charlie1a DNA MER1_type 1 242 -1213 1662 157 44 7 chr12 32625728 32626022 -111160433 - L1MA3 LINE L1 0 6305 6001 252 62 21 62 chr12 32626259 32626307 -111160148 + AluSc SINE Alu 254 299 0 744 240 20 0 chr12 32626315 32626465 -111159990 + MER58B DNA MER1_type 189 341 0 1640 172 35 14 chr12 32626542 32626832 -111159623 - AluJb SINE Alu -16 296 1 232 263 32 63 chr12 32628795 32628890 -111157565 + MIR SINE MIR 164 255 -7 3008 214 34 20 chr12 32628901 32629583 -111156872 - Charlie1 DNA MER1_type -473 2288 1598 354 259 62 0 chr12 32629554 32629635 -111156820 - Charlie1 DNA MER1_type -2664 97 12 * 997 105 20 0 chr12 32629636 32629788 -111156667 + L1MA2 LINE L1 5869 6023 -281 194 129 0 0 chr12 32629811 32629842 -111156613 + (C)n Simple_repeat Simple_repeat 1 31 0 1558 143 49 52 chr12 32630191 32630498 -111155957 - AluSx SINE Alu -6 306 1 2280 89 0 13 chr12 32630526 32630830 -111155625 + AluY SINE Alu 1 300 -11 2377 96 0 0 chr12 32630897 32631200 -111155255 + AluSq SINE Alu 1 303 -10 2254 103 13 0 chr12 32631939 32632239 -111154216 + AluSq SINE Alu 1 304 -9 209 326 11 43 chr12 32632853 32632907 -111153548 - MIR3 SINE MIR -2 206 155 604 233 85 28 chr12 32632907 32633083 -111153372 - MER5A DNA MER1_type 0 189 4 209 326 11 43 chr12 32633083 32633120 -111153335 - MIR3 SINE MIR -53 155 118 2980 128 7 30 chr12 32633120 32633556 -111152899 - MSTB LTR MaLR 0 426 1 2982 106 86 0 chr12 32633570 32633953 -111152502 + MLT2A2 LTR ERVL 1 424 -29 894 81 0 0 chr12 32633953 32634077 -111152378 + (TA)n Simple_repeat Simple_repeat 2 125 0 2982 106 86 0 chr12 32634077 32634110 -111152345 + MLT2A2 LTR ERVL 424 453 0 452 230 81 72 chr12 32634195 32634417 -111152038 + L2 LINE L2 2905 3128 -185 1004 226 149 29 chr12 32634619 32634928 -111151527 - L2 LINE L2 0 3313 3042 3000 191 2 6 chr12 32634928 32635416 -111151039 + MER66B LTR ERV1 1 486 0 1004 226 149 29 chr12 32635416 32635681 -111150774 - L2 LINE L2 -271 3042 2668 4559 167 29 14 chr12 32635764 32636628 -111149827 + L1MB4 LINE L1 5304 6180 0 252 188 0 0 chr12 32636672 32636720 -111149735 - L2 LINE L2 -5 3308 3261 190 277 36 48 chr12 32637879 32637962 -111148493 + MIR SINE MIR 28 109 -153 438 238 229 51 chr12 32637982 32638196 -111148259 + MIR SINE MIR 8 259 -3 2104 178 5 56 chr12 32638538 32638949 -111147506 + MLT1B LTR MaLR 1 390 0 184 302 50 126 chr12 32639023 32639215 -111147240 - L2 LINE L2 -4 3268 3116 2667 89 100 8 chr12 32639215 32639606 -111146849 + MSTA LTR MaLR 2 428 0 184 302 50 126 chr12 32639606 32639777 -111146678 - L2 LINE L2 -156 3116 2933 218 306 14 14 chr12 32640070 32640142 -111146313 - MIR SINE MIR -32 230 159 303 268 21 10 chr12 32640337 32640434 -111146021 - MLT1J1 LTR MaLR -295 151 54 294 361 56 0 chr12 32640489 32640597 -111145858 - MIR SINE MIR -147 115 2 2280 105 3 0 chr12 32640631 32640936 -111145519 + AluSp SINE Alu 1 306 -7 506 335 74 54 chr12 32640961 32641268 -111145187 - L2 LINE L2 -584 2730 2408 1817 154 30 13 chr12 32641268 32641573 -111144882 + AluJb SINE Alu 1 310 -2 506 335 74 54 chr12 32641573 32641781 -111144674 - L2 LINE L2 -906 2408 2205 237 261 127 61 chr12 32641785 32641950 -111144505 - L2 LINE L2 -1274 2040 1865 4481 164 28 19 chr12 32642044 32642823 -111143632 + MER21B LTR ERV1 1 786 -77 952 310 61 22 chr12 32642959 32643366 -111143089 - LTR16A LTR ERVL -10 440 18 714 264 62 0 chr12 32643381 32643574 -111142881 + MIR SINE MIR 43 247 -15 198 184 41 41 chr12 32643599 32643648 -111142807 - MIR3 SINE MIR -153 55 7 225 295 26 13 chr12 32644276 32644354 -111142101 + MIR SINE MIR 72 150 -112 45302 38 1 1 chr12 32645200 32651358 -111135097 + L1PA4 LINE L1 1 6152 -3 27 0 0 0 chr12 32651358 32651385 -111135070 + AT_rich Low_complexity Low_complexity 1 27 0 2305 158 29 75 chr12 32651462 32651943 -111134512 - MLT1C LTR MaLR -8 459 1 552 194 15 8 chr12 32651946 32652080 -111134375 + L1ME2 LINE L1 5067 5201 -945 2603 190 105 70 chr12 32652456 32653362 -111133093 + L1ME2 LINE L1 5188 6161 -3 2627 151 46 12 chr12 32654430 32654842 -111131613 - MSTA LTR MaLR 0 428 3 2783 88 11 0 chr12 32655228 32655579 -111130876 + THE1A LTR MaLR 1 355 0 717 180 90 66 chr12 32657085 32657329 -111129126 + L1M4c LINE L1 1279 1528 -4856 15904 157 13 18 chr12 32657332 32659315 -111127140 + L1PA16 LINE L1 2 1973 -4876 2344 122 0 0 chr12 32659315 32659627 -111126828 + AluSx SINE Alu 1 312 0 15904 157 13 18 chr12 32659627 32660219 -111126236 + L1PA16 LINE L1 1973 2566 -4283 2143 207 47 2 chr12 32660197 32660689 -111125766 + L1PA16 LINE L1 5378 5891 -958 * 8219 114 21 16 chr12 32660696 32661936 -111124519 + L1PA7 LINE L1 5 1250 -5211 20494 87 2 1 chr12 32661938 32665402 -111121053 + L1PA7 LINE L1 2966 6453 -16 3874 128 40 11 chr12 32665440 32666136 -111120319 + L1PA16 LINE L1 5875 6585 -284 6521 95 10 22 chr12 32666136 32667206 -111119249 + L1PA13 LINE L1 5100 6158 -5 2502 61 0 10 chr12 32667208 32667518 -111118937 + AluY SINE Alu 1 307 -4 309 296 60 25 chr12 32667527 32667717 -111118738 - L1ME LINE L1 -456 5714 5514 430 299 32 36 chr12 32667818 32668096 -111118359 + HAL1b LINE L1 661 937 -411 2282 110 0 0 chr12 32668232 32668531 -111117924 - AluSc SINE Alu -10 299 1 1093 172 0 0 chr12 32668566 32668740 -111117715 + AluJb SINE Alu 137 310 -2 356 216 0 0 chr12 32668753 32668841 -111117614 + GA-rich Low_complexity Low_complexity 3 90 0 1391 101 31 35 chr12 32669065 32669293 -111117162 + L1MA10 LINE L1 6101 6327 -7 380 351 56 38 chr12 32669296 32669689 -111116766 + L1M4 LINE L1 2235 2634 -3512 234 215 38 25 chr12 32670403 32670482 -111115973 + L1M4 LINE L1 1042 1121 -5421 930 196 0 6 chr12 32670499 32670657 -111115798 + FRAM SINE Alu 1 152 -24 5387 76 46 7 chr12 32671267 32671989 -111114466 - L1PA11 LINE L1 0 6174 5425 23 0 0 0 chr12 32672607 32672630 -111113825 + AT_rich Low_complexity Low_complexity 1 23 0 1844 45 0 18 chr12 32673534 32673754 -111112701 + AluY SINE Alu 86 301 -10 1892 146 3 13 chr12 32675648 32675949 -111110506 + AluSx SINE Alu 1 298 -14 1890 153 10 0 chr12 32676089 32676384 -111110071 + AluSx SINE Alu 1 298 -14 629 235 159 39 chr12 32676387 32676778 -111109677 + MLT1H LTR MaLR 79 527 -15 2422 74 7 0 chr12 32677221 32677530 -111108925 - AluY SINE Alu 0 311 1 769 287 116 37 chr12 32678337 32678500 -111107955 + MLT1H LTR MaLR 1 150 -399 2124 118 14 3 chr12 32678500 32678797 -111107658 + AluJb SINE Alu 1 300 -12 769 287 116 37 chr12 32678797 32679142 -111107313 + MLT1H LTR MaLR 150 549 0 1328 262 136 16 chr12 32679388 32679872 -111106583 - MLT1F LTR MaLR 0 542 1 443 255 43 35 chr12 32679938 32680079 -111106376 - LTR67 LTR ERVL -4 553 412 2055 191 30 74 chr12 32680458 32680986 -111105469 - MLT1D LTR MaLR 0 505 1 4654 226 79 15 chr12 32681675 32683461 -111102994 + L1M1 LINE L1 3026 4943 -2622 1373 211 4 7 chr12 32683578 32683848 -111102607 + AluJo SINE Alu 6 274 -38 2353 11 7 0 chr12 32684221 32684493 -111101962 + L1PA2 LINE L1 5881 6154 -1 412 220 66 0 chr12 32684561 32684652 -111101803 + Tigger3b DNA MER2_type 6 102 -1129 * 4666 100 144 13 chr12 32684651 32685473 -111100982 + Tigger3b DNA MER2_type 279 1207 -24 23 0 0 0 chr12 32686699 32686722 -111099733 + AT_rich Low_complexity Low_complexity 1 23 0 255 255 106 35 chr12 32690090 32690231 -111096224 + L1ME LINE L1 5673 5823 -298 25 51 0 0 chr12 32690244 32690283 -111096172 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr12 32691247 32691268 -111095187 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr12 32691295 32691327 -111095128 + AT_rich Low_complexity Low_complexity 1 32 0 3074 159 73 6 chr12 32691644 32692064 -111094391 + L1MA7 LINE L1 5620 6097 -194 225 0 0 0 chr12 32692064 32692089 -111094366 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3074 159 73 6 chr12 32692089 32692298 -111094157 + L1MA7 LINE L1 6097 6291 0 216 0 0 0 chr12 32692856 32692880 -111093575 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2350 58 0 17 chr12 32695522 32695815 -111090640 - AluY SINE Alu -23 288 1 29 0 0 0 chr12 32696111 32696140 -111090315 + AT_rich Low_complexity Low_complexity 1 29 0 1512 101 48 0 chr12 32697594 32697821 -111088634 + L1MA5A LINE L1 6038 6275 -22 493 261 188 23 chr12 32697966 32698311 -111088144 + L1MC4a LINE L1 5756 6157 -1651 435 103 0 0 chr12 32698334 32698402 -111088053 - Alu SINE Alu 0 311 244 311 254 121 118 chr12 32698410 32698756 -111087699 + L1MC4a LINE L1 6235 6581 -1227 2198 100 0 23 chr12 32698757 32699066 -111087389 + AluSq SINE Alu 1 302 -11 1037 199 5 0 chr12 32699089 32699285 -111087170 + L1PA16 LINE L1 5954 6150 -16 227 129 29 29 chr12 32699472 32699542 -111086913 + (TA)n Simple_repeat Simple_repeat 2 71 0 846 198 172 104 chr12 32699544 32700026 -111086429 + L1MC5 LINE L1 6671 7173 -788 256 119 24 24 chr12 32700091 32700133 -111086322 + AluSc SINE Alu 219 260 -39 249 183 33 17 chr12 32700134 32700194 -111086261 + L1MC5 LINE L1 7308 7368 -593 1608 170 26 42 chr12 32700312 32700662 -111085793 + MSTB2 LTR MaLR 1 282 -114 1440 206 10 21 chr12 32700938 32701229 -111085226 + AluJo SINE Alu 9 296 -16 545 174 181 7 chr12 32701328 32701466 -111084989 + L1M4b LINE L1 791 952 -5907 2259 106 6 10 chr12 32701485 32701797 -111084658 - AluSx SINE Alu -1 311 1 203 268 134 24 chr12 32702027 32702109 -111084346 + L2 LINE L2 3150 3240 -32 24 77 0 0 chr12 32702156 32702208 -111084247 + AT_rich Low_complexity Low_complexity 1 52 0 485 205 162 52 chr12 32702784 32703111 -111083344 + HAL1 LINE L1 1081 1443 -1064 1468 162 156 3 chr12 32703174 32703476 -111082979 - MER7A DNA MER2_type 0 346 1 486 330 23 6 chr12 32704333 32704506 -111081949 - MIR3 SINE MIR -8 200 25 2166 98 14 3 chr12 32705983 32706278 -111080177 - AluSq SINE Alu -15 298 1 906 244 129 52 chr12 32707788 32708153 -111078302 - L2 LINE L2 -11 3302 2910 614 259 129 10 chr12 32708437 32708630 -111077825 - MIR SINE MIR -27 235 20 819 185 46 0 chr12 32709143 32709294 -111077161 + AluJo SINE Alu 48 205 -107 189 0 0 0 chr12 32709301 32709322 -111077133 + (GA)n Simple_repeat Simple_repeat 2 22 0 1265 182 112 15 chr12 32710751 32711020 -111075435 + AluJo SINE Alu 1 295 -17 286 279 0 0 chr12 32712486 32712554 -111073901 - L3 LINE CR1 -175 1402 1335 2517 45 0 7 chr12 32712633 32712942 -111073513 + AluY SINE Alu 1 307 -4 338 308 62 51 chr12 32713037 32713232 -111073223 + L1M4 LINE L1 4883 5079 -1067 24 77 0 0 chr12 32713270 32713322 -111073133 + AT_rich Low_complexity Low_complexity 1 52 0 2152 122 0 7 chr12 32714216 32714510 -111071945 + AluSx SINE Alu 1 292 -20 23 68 0 0 chr12 32714599 32714643 -111071812 + AT_rich Low_complexity Low_complexity 1 44 0 399 233 103 0 chr12 32716271 32716387 -111070068 + L1ME2 LINE L1 6027 6154 -10 2346 73 0 52 chr12 32716787 32717115 -111069340 + AluY SINE Alu 1 311 0 1189 193 134 30 chr12 32717198 32717467 -111068988 - AluJo SINE Alu -5 297 1 28 0 0 0 chr12 32717609 32717637 -111068818 + AT_rich Low_complexity Low_complexity 1 28 0 239 209 164 0 chr12 32717902 32717969 -111068486 + MER116 DNA Mariner 3 80 0 239 226 38 19 chr12 32718368 32718421 -111068034 - L2 LINE L2 -78 3235 3182 5609 134 110 29 chr12 32718430 32719096 -111067359 + Tigger3b DNA MER2_type 2 613 -2415 2094 90 38 3 chr12 32719096 32719385 -111067070 + AluSg SINE Alu 1 299 -11 5609 134 110 29 chr12 32719385 32719856 -111066599 + Tigger3b DNA MER2_type 613 1231 0 1947 146 3 0 chr12 32720086 32720380 -111066075 - AluSx SINE Alu -17 295 1 26 50 0 0 chr12 32720883 32720923 -111065532 + AT_rich Low_complexity Low_complexity 1 40 0 297 128 0 0 chr12 32721347 32721394 -111065061 + (TTC)n Simple_repeat Simple_repeat 3 49 0 253 186 0 0 chr12 32721637 32721680 -111064775 - MIR SINE MIR 0 262 220 27 0 0 0 chr12 32721938 32721965 -111064490 + AT_rich Low_complexity Low_complexity 1 27 0 452 282 7 0 chr12 32722660 32722802 -111063653 - MER103 DNA DNA -13 153 11 778 225 55 10 chr12 32724816 32725016 -111061439 - MER3 DNA MER1_type 0 209 1 2293 118 3 0 chr12 32726375 32726680 -111059775 - AluSx SINE Alu -6 306 1 261 0 0 0 chr12 32726742 32726771 -111059684 + (TG)n Simple_repeat Simple_repeat 2 30 0 1914 104 86 0 chr12 32726884 32727162 -111059293 + AluSx SINE Alu 1 302 -10 1939 127 4 4 chr12 32727600 32727875 -111058580 - AluJb SINE Alu -23 289 15 34 55 0 0 chr12 32728043 32728098 -111058357 + AT_rich Low_complexity Low_complexity 1 55 0 28 48 0 0 chr12 32728174 32728216 -111058239 + AT_rich Low_complexity Low_complexity 1 42 0 666 297 52 22 chr12 32729968 32730372 -111056083 + L1MC4a LINE L1 5495 5910 -1898 352 220 229 47 chr12 32730831 32731045 -111055410 + HAL1b LINE L1 1064 1316 -32 404 301 159 4 chr12 32732000 32732239 -111054216 - L1ME LINE L1 -488 5633 5358 246 323 30 0 chr12 32732254 32732418 -111054037 - L1ME LINE L1 -814 5332 5164 195 235 270 17 chr12 32733977 32734092 -111052363 + L2 LINE L2 2899 3042 -271 284 119 0 0 chr12 32735118 32735160 -111051295 + 5S rRNA rRNA 1 42 -79 736 218 40 6 chr12 32735766 32735940 -111050515 - MER5A DNA MER1_type -9 180 1 201 286 98 74 chr12 32737540 32737743 -111048712 - L2 LINE L2 0 3313 3106 4384 127 59 7 chr12 32737752 32738498 -111047957 + LTR1 LTR ERV1 1 785 0 180 0 0 0 chr12 32739965 32739985 -111046470 + (CG)n Simple_repeat Simple_repeat 1 20 0 * 339 25 0 0 chr12 32739984 32740024 -111046431 + (TG)n Simple_repeat Simple_repeat 2 41 0 1496 185 38 4 chr12 32740061 32740326 -111046129 - AluJb SINE Alu -38 274 1 392 273 116 37 chr12 32740441 32740657 -111045798 + L2 LINE L2 2128 2360 -954 3876 154 47 7 chr12 32740729 32741458 -111044997 + L1MD1 LINE L1 5476 6233 -9 208 333 0 46 chr12 32741943 32742030 -111044425 + L2 LINE L2 3231 3313 0 283 313 158 42 chr12 32742031 32742315 -111044140 - L2 LINE L2 -701 2613 2297 2236 120 3 3 chr12 32742786 32743095 -111043360 + AluSx SINE Alu 1 309 -3 1114 199 26 22 chr12 32743140 32743371 -111043084 + MER8 DNA MER2_type 8 239 0 24 0 0 0 chr12 32743381 32743405 -111043050 + AT_rich Low_complexity Low_complexity 1 24 0 185 245 38 19 chr12 32744017 32744070 -111042385 + MIR SINE MIR 151 204 -58 1871 143 0 38 chr12 32744072 32744204 -111042251 + AluJb SINE Alu 1 137 -175 2148 117 10 3 chr12 32744204 32744504 -111041951 + AluSx SINE Alu 1 302 -10 1871 143 0 38 chr12 32744504 32744685 -111041770 + AluJb SINE Alu 137 302 -10 336 284 123 0 chr12 32745094 32745138 -111041317 - L1MC/D LINE L1 -2152 5656 5619 432 0 0 0 chr12 32745138 32745186 -111041269 + (TG)n Simple_repeat Simple_repeat 2 49 0 336 284 123 0 chr12 32745186 32745303 -111041152 - L1MC/D LINE L1 -2189 5619 5475 5685 213 72 12 chr12 32746673 32747007 -111039448 + L1MB8 LINE L1 3141 3453 -2693 200 33 0 33 chr12 32747007 32747037 -111039418 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5685 213 72 12 chr12 32747037 32748553 -111037902 + L1MB8 LINE L1 3453 5103 -1043 1077 144 58 4 chr12 32748555 32748765 -111037690 + AluJb SINE Alu 1 305 -7 3297 158 139 11 chr12 32748765 32749711 -111036744 + L1MB8 LINE L1 5100 6173 -5 21 71 0 0 chr12 32749839 32749881 -111036574 + AT_rich Low_complexity Low_complexity 1 42 0 301 314 122 21 chr12 32750821 32751009 -111035446 - L1ME LINE L1 -282 5839 5633 22 35 0 0 chr12 32751356 32751385 -111035070 + AT_rich Low_complexity Low_complexity 1 29 0 425 293 64 6 chr12 32751389 32751546 -111034909 + HAL1 LINE L1 4 169 -2338 709 187 64 41 chr12 32751624 32751795 -111034660 + MIR SINE MIR 1 175 -87 492 224 153 90 chr12 32751911 32752134 -111034321 + MIR SINE MIR 26 262 0 194 298 133 46 chr12 32752379 32752530 -111033925 - MIR3 SINE MIR -22 186 23 23 33 0 0 chr12 32752982 32753012 -111033443 + AT_rich Low_complexity Low_complexity 1 30 0 570 233 19 92 chr12 32753659 32753865 -111032590 + L2 LINE L2 3119 3309 -4 23 68 0 0 chr12 32754484 32754528 -111031927 + AT_rich Low_complexity Low_complexity 1 44 0 2979 174 38 21 chr12 32755118 32756237 -111030218 + L1MA8 LINE L1 4767 5897 -394 1097 129 35 10 chr12 32756252 32756454 -111030001 - L1MC2 LINE L1 -181 6163 5957 842 120 180 6 chr12 32756476 32756867 -111029588 - L1MA8 LINE L1 0 6291 5775 249 209 75 0 chr12 32756897 32756964 -111029491 + Charlie7 DNA MER1_type 2541 2612 0 1716 179 3 3 chr12 32757192 32757477 -111028978 - AluJb SINE Alu -27 285 1 24 53 0 0 chr12 32757772 32757810 -111028645 + AT_rich Low_complexity Low_complexity 1 38 0 313 242 54 60 chr12 32757929 32758078 -111028377 + L1MC4a LINE L1 4568 4715 -1431 693 268 100 53 chr12 32758446 32758976 -111027479 + L1MC4a LINE L1 5379 5933 -1875 984 113 0 0 chr12 32759295 32759463 -111026992 + L1PA12 LINE L1 5715 5882 -286 921 136 0 0 chr12 32759756 32759888 -111026567 - AluSg/x SINE Alu -17 293 162 2138 125 168 77 chr12 32759889 32760472 -111025983 + MER4-int LTR ERV1 47 682 -5916 182 61 0 61 chr12 32760610 32760643 -111025812 + (GAA)n Simple_repeat Simple_repeat 3 33 0 1827 143 84 26 chr12 32760851 32761194 -111025261 - THE1B LTR MaLR -1 363 1 392 312 24 8 chr12 32761256 32761381 -111025074 - MIR3 SINE MIR -41 167 41 263 256 105 12 chr12 32761539 32761625 -111024830 - L2 LINE L2 -1 3271 3178 430 149 228 35 chr12 32761629 32761844 -111024611 + FLAM_C SINE Alu 1 237 0 205 219 62 0 chr12 32762711 32762775 -111023680 - MIR SINE MIR -42 220 153 1336 197 82 82 chr12 32762779 32762830 -111023625 - LTR8A LTR ERV1 0 727 677 2051 139 0 0 chr12 32762830 32763124 -111023331 + AluSx SINE Alu 1 294 -18 1336 197 82 82 chr12 32763124 32763575 -111022880 - LTR8A LTR ERV1 -49 678 225 302 182 91 26 chr12 32763687 32763764 -111022691 - LTR8 LTR ERV1 -609 82 1 529 289 30 0 chr12 32763769 32763904 -111022551 - MIR SINE MIR -115 147 9 456 289 20 27 chr12 32763964 32764113 -111022342 + L2 LINE L2 3162 3309 -4 1159 258 111 11 chr12 32764318 32764865 -111021590 - L2 LINE L2 0 3313 2707 306 304 161 9 chr12 32764886 32764998 -111021457 + L2 LINE L2 3126 3254 -18 280 339 59 46 chr12 32765182 32765421 -111021034 - L2 LINE L2 -337 2977 2736 25395 100 13 10 chr12 32767207 32771091 -111015364 + L1PA6 LINE L1 22 3914 -2232 553 76 0 0 chr12 32771091 32771170 -111015285 + L1PA5 LINE L1 6075 6153 -1 * 11165 60 12 10 chr12 32771169 32772734 -111013721 + L1PA6 LINE L1 3912 5490 -664 2304 101 0 3 chr12 32772734 32773032 -111013423 + AluY SINE Alu 1 297 -14 11165 60 12 10 chr12 32773032 32773699 -111012756 + L1PA6 LINE L1 5490 6154 0 257 224 47 12 chr12 32773852 32773937 -111012518 - L1MC4 LINE L1 -26 8016 7929 30 69 0 0 chr12 32774080 32774138 -111012317 + AT_rich Low_complexity Low_complexity 1 58 0 370 271 33 81 chr12 32774276 32774486 -111011969 - L1ME3A LINE L1 -60 6110 5911 744 255 53 35 chr12 32774512 32774853 -111011602 - L1ME LINE L1 -3529 3638 3292 7404 211 21 21 chr12 32774866 32777063 -111009392 - L1M4 LINE L1 -4326 2842 634 308 248 87 35 chr12 32778018 32778177 -111008278 - L1ME LINE L1 -5900 1257 1093 1184 173 98 26 chr12 32778247 32778584 -111007871 + MSTC LTR MaLR 34 428 0 5274 121 32 16 chr12 32778659 32779512 -111006943 - Tigger3(Golem) DNA MER2_type -1 3028 2163 912 228 0 0 chr12 32779506 32779668 -111006787 - Tigger3(Golem) DNA MER2_type -2866 163 2 * 1243 122 76 5 chr12 32779707 32779904 -111006551 - MER2 DNA MER2_type -134 211 1 435 268 43 0 chr12 32779911 32780049 -111006406 + L1ME4a LINE L1 5977 6120 -1 4198 170 66 41 chr12 32780145 32780967 -111005488 - MER21B LTR ERV1 -21 842 1 425 242 102 45 chr12 32781063 32781220 -111005235 - MIR3 SINE MIR -23 185 20 1864 149 3 3 chr12 32781501 32781796 -111004659 + AluSx SINE Alu 1 295 -17 211 351 181 30 chr12 32781842 32782141 -111004314 + L2 LINE L2 2927 3270 -2 2032 139 0 0 chr12 32783109 32783412 -111003043 - AluSx SINE Alu -9 303 1 1168 222 9 4 chr12 32783803 32784033 -111002422 + MIR SINE MIR 32 262 0 260 235 126 84 chr12 32785035 32785154 -111001301 - MIR3 SINE MIR -47 161 38 453 156 10 73 chr12 32786069 32786165 -111000290 + MIR SINE MIR 73 162 -100 292 98 0 0 chr12 32787921 32787962 -110998493 + MIR SINE MIR 104 144 -64 1970 128 7 0 chr12 32788562 32788859 -110997596 - AluSx SINE Alu -13 299 1 263 159 0 0 chr12 32789152 32789196 -110997259 - L3 LINE CR1 -193 1384 1341 524 323 91 17 chr12 32789489 32789721 -110996734 + MIR SINE MIR 4 252 -10 375 60 0 0 chr12 32789889 32789939 -110996516 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 194 296 84 0 chr12 32789939 32790010 -110996445 - L2 LINE L2 -17 3296 3220 354 377 91 26 chr12 32790212 32790673 -110995782 - L2 LINE L2 -482 2832 2342 205 322 127 35 chr12 32790699 32790770 -110995685 - L2 LINE L2 -1242 2072 2009 1482 158 24 0 chr12 32790770 32791023 -110995432 + AluJb SINE Alu 49 307 -5 205 322 127 35 chr12 32791023 32791265 -110995190 - L2 LINE L2 -1305 2009 1730 198 343 0 15 chr12 32791738 32791805 -110994650 - L3 LINE CR1 -790 787 722 288 0 0 0 chr12 32792171 32792203 -110994252 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 1003 121 6 12 chr12 32792203 32792299 -110994156 + (TTCC)n Simple_repeat Simple_repeat 1 267 0 1003 121 6 12 chr12 32792299 32792472 -110993983 + (TTCC)n Simple_repeat Simple_repeat 2 173 0 1650 178 21 0 chr12 32793172 32793448 -110993007 + AluJb SINE Alu 1 285 -27 213 39 0 0 chr12 32793448 32793474 -110992981 + (GGAGAA)n Simple_repeat Simple_repeat 6 31 0 370 294 129 42 chr12 32793580 32795164 -110991291 + L1ME LINE L1 2786 4658 -1488 564 306 86 32 chr12 32795217 32795750 -110990705 + L1ME LINE L1 4743 5304 -842 337 335 43 32 chr12 32795764 32795949 -110990506 + L1ME LINE L1 5357 5543 -631 1061 205 95 108 chr12 32795949 32796396 -110990059 + LTR28 LTR ERV1 1 452 -911 2264 153 23 3 chr12 32796396 32796750 -110989705 + THE1B LTR MaLR 1 361 -3 1061 205 95 108 chr12 32796750 32796844 -110989611 + LTR28 LTR ERV1 452 1232 -131 396 307 70 14 chr12 32796894 32797109 -110989346 + L1ME LINE L1 5548 5774 -396 835 214 10 42 chr12 32797140 32797332 -110989123 - MIR SINE MIR -22 240 55 209 300 57 14 chr12 32798455 32798525 -110987930 + MIR SINE MIR 17 89 -119 190 224 0 20 chr12 32799784 32799833 -110986622 - L2 LINE L2 -1 3271 3224 27 62 0 0 chr12 32799973 32800021 -110986434 + AT_rich Low_complexity Low_complexity 1 48 0 2245 160 6 3 chr12 32800531 32800893 -110985562 + MLT1A1 LTR MaLR 1 363 -2 2252 94 0 0 chr12 32801189 32801488 -110984967 - AluSg SINE Alu -11 299 1 391 277 17 42 chr12 32801864 32801983 -110984472 + L2 LINE L2 3157 3272 0 408 289 62 99 chr12 32802209 32802482 -110983973 - L1MC4a LINE L1 -135 5986 5724 329 325 95 43 chr12 32802508 32802739 -110983716 + MIR SINE MIR 3 245 -17 24 32 0 0 chr12 32803909 32803940 -110982515 + AT_rich Low_complexity Low_complexity 1 31 0 1190 157 0 5 chr12 32804038 32804235 -110982220 + L1PA15 LINE L1 5970 6165 0 212 0 0 35 chr12 32804581 32804610 -110981845 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 7540 32 3 0 chr12 32804610 32805671 -110980784 - L1PA4 LINE L1 -13 6142 5087 1772 149 0 29 chr12 32806009 32806317 -110980138 - AluSx SINE Alu -13 299 1 324 308 82 27 chr12 32806725 32806871 -110979584 + MIR3 SINE MIR 3 156 -52 1125 268 80 11 chr12 32806972 32807183 -110979272 + Charlie7 DNA MER1_type 169 364 -2248 581 106 0 0 chr12 32807183 32807268 -110979187 + L1PA10 LINE L1 6076 6160 -8 1125 268 80 11 chr12 32807268 32807429 -110979026 + Charlie7 DNA MER1_type 364 567 -2045 30 0 0 0 chr12 32807452 32807482 -110978973 + AT_rich Low_complexity Low_complexity 1 30 0 1892 99 0 51 chr12 32807482 32807774 -110978681 - AluSx SINE Alu -22 290 14 495 204 76 140 chr12 32807814 32808221 -110978234 + Charlie7 DNA MER1_type 2157 2537 -75 364 175 21 21 chr12 32809120 32809217 -110977238 + (TATATG)n Simple_repeat Simple_repeat 5 101 0 248 200 139 26 chr12 32809217 32809332 -110977123 + Charlie7 DNA MER1_type 2471 2598 -14 3128 143 87 38 chr12 32810228 32810460 -110975995 - LTR9B LTR ERV1 0 644 425 6373 114 23 22 chr12 32810460 32811413 -110975042 - LTR13 LTR ERVK 0 954 1 3128 143 87 38 chr12 32811413 32811695 -110974760 - LTR9B LTR ERV1 -219 425 93 2043 110 7 20 chr12 32811695 32811996 -110974459 + AluSx SINE Alu 1 297 -15 3128 143 87 38 chr12 32811996 32812088 -110974367 - LTR9B LTR ERV1 -551 93 7 1356 185 0 22 chr12 32812088 32812255 -110974200 - HUERS-P3 LTR ERV1 0 8919 8750 4630 45 35 0 chr12 32812255 32812826 -110973629 + LTR10C LTR ERV1 1 591 0 1356 185 0 22 chr12 32812826 32812934 -110973521 - HUERS-P3 LTR ERV1 -169 8750 7158 696 190 45 8 chr12 32813193 32813384 -110973071 - HUERS-P3 LTR ERV1 -551 4329 2383 455 215 0 0 chr12 32813386 32813479 -110972976 - HUERS-P3 LTR ERV1 -1945 6974 6882 3979 175 4 26 chr12 32813486 32813929 -110972526 - HUERS-P3 LTR ERV1 -1998 6921 6497 2079 61 10 17 chr12 32813929 32814265 -110972190 + AluY SINE Alu 1 311 0 3979 175 4 26 chr12 32814265 32814508 -110971947 - HUERS-P3 LTR ERV1 -2422 6497 6250 2964 157 4 7 chr12 32814492 32814980 -110971475 - HUERS-P3 LTR ERV1 -1699 5404 4889 * 822 194 43 0 chr12 32814980 32815119 -110971336 - HUERS-P3 LTR ERV1 -4236 4683 4539 * 8425 166 37 26 chr12 32815112 32817321 -110969134 - HUERS-P3 LTR ERV1 -5314 2104 738 2345 77 3 0 chr12 32817321 32817632 -110968823 - AluSp SINE Alu -1 312 1 8425 166 37 26 chr12 32817632 32817964 -110968491 - HUERS-P3 LTR ERV1 -6680 738 411 320 184 92 101 chr12 32817956 32818065 -110968390 - HUERS-P3 LTR ERV1 -7310 108 1 * 3224 165 53 23 chr12 32818065 32818684 -110967771 - LTR9B LTR ERV1 0 644 7 951 317 57 29 chr12 32818696 32819219 -110967236 + L2 LINE L2 2422 2959 -355 286 152 0 0 chr12 32820781 32820827 -110965628 + MIR SINE MIR 184 229 -33 1416 183 98 87 chr12 32821370 32821869 -110964586 + MER66A LTR ERV1 97 478 0 336 246 29 76 chr12 32823309 32823480 -110962975 + L2 LINE L2 2897 3059 -213 1151 171 36 52 chr12 32823808 32824059 -110962396 - AluJo SINE Alu -19 293 47 1811 143 7 30 chr12 32824181 32824481 -110961974 - AluJo SINE Alu -19 293 1 1943 167 167 49 chr12 32824797 32825287 -110961168 - LTR10A LTR ERV1 -61 548 1 2027 228 128 33 chr12 32826612 32827274 -110959181 - MER50 LTR ERV1 0 734 10 258 310 46 76 chr12 32827514 32827636 -110958819 + MIR SINE MIR 40 156 -63 4319 146 94 13 chr12 32828091 32828853 -110957602 - LTR1B LTR ERV1 -2 824 1 246 273 0 15 chr12 32829573 32829639 -110956816 + MIR SINE MIR 187 251 -11 2935 130 9 0 chr12 32829977 32830401 -110956054 + MSTA LTR MaLR 1 428 0 293 293 121 32 chr12 32830911 32831068 -110955387 - MIR SINE MIR -60 202 32 232 308 0 0 chr12 32831168 32831233 -110955222 + (TG)n Simple_repeat Simple_repeat 1 65 0 198 0 0 0 chr12 32831616 32831638 -110954817 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 405 0 0 0 chr12 32831637 32831682 -110954773 + (CA)n Simple_repeat Simple_repeat 1 45 0 572 263 81 8 chr12 32831911 32832147 -110954308 - MER112 DNA MER1_type -1 255 3 765 62 0 0 chr12 32835683 32835780 -110950675 - L1PA8 LINE L1 0 6172 6076 188 306 65 0 chr12 32836225 32836287 -110950168 - MIR SINE MIR -40 222 157 214 298 188 16 chr12 32836327 32836449 -110950006 - MIR SINE MIR -102 160 21 216 311 0 0 chr12 32837336 32837397 -110949058 + L3 LINE CR1 938 998 -579 252 204 19 0 chr12 32837418 32837472 -110948983 + MER5B DNA MER1_type 3 57 -121 263 192 39 0 chr12 32837490 32837542 -110948913 - MER5B DNA MER1_type -123 55 2 1165 269 156 12 chr12 32837549 32838035 -110948420 + L3 LINE CR1 1012 1567 -10 526 285 81 23 chr12 32838059 32838280 -110948175 - L2 LINE L2 -1 3312 3079 204 179 0 0 chr12 32838775 32838814 -110947641 + (CA)n Simple_repeat Simple_repeat 1 39 0 234 81 0 0 chr12 32840047 32840084 -110946371 + (T)n Simple_repeat Simple_repeat 1 37 0 986 166 28 4 chr12 32841092 32841315 -110945140 - LTR25 LTR ERV1 0 784 339 558 158 26 92 chr12 32841488 32841640 -110944815 - LTR25 LTR ERV1 -438 356 215 282 29 0 0 chr12 32841647 32841682 -110944773 + (TG)n Simple_repeat Simple_repeat 2 36 0 2224 111 0 0 chr12 32841924 32842230 -110944225 - AluSq SINE Alu -7 306 1 384 59 0 0 chr12 32843292 32843343 -110943112 + (TC)n Simple_repeat Simple_repeat 1 51 0 243 61 0 0 chr12 32844015 32844048 -110942407 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 1501 188 37 12 chr12 32844876 32845188 -110941267 - MER61B LTR ERV1 -12 413 1 1632 170 7 7 chr12 32845779 32846068 -110940387 - AluJb SINE Alu -17 295 7 204 40 0 0 chr12 32846322 32846347 -110940108 + (CA)n Simple_repeat Simple_repeat 1 25 0 4213 240 74 26 chr12 32846357 32847252 -110939203 + L1MD2 LINE L1 4299 5150 -1209 1724 181 0 3 chr12 32847252 32847550 -110938905 + AluJo SINE Alu 1 297 -15 4213 240 74 26 chr12 32847550 32848524 -110937931 + L1MD2 LINE L1 5150 6346 -13 305 221 15 0 chr12 32848543 32848611 -110937844 + L1MC/D LINE L1 5722 5790 -2018 255 246 86 104 chr12 32849025 32849245 -110937210 - L1MC4 LINE L1 -1 8041 7826 2913 211 60 49 chr12 32849277 32849421 -110937034 - L1ME2 LINE L1 -10 6154 6013 753 157 51 91 chr12 32849421 32849495 -110936960 + MER53 DNA DNA 1 76 -113 408 20 0 0 chr12 32849495 32849544 -110936911 + (TG)n Simple_repeat Simple_repeat 2 50 0 753 157 51 91 chr12 32849544 32849604 -110936851 + MER53 DNA DNA 76 127 -62 1546 170 42 17 chr12 32849604 32849892 -110936563 + AluJo SINE Alu 1 295 -17 753 157 51 91 chr12 32849892 32849953 -110936502 + MER53 DNA DNA 127 189 0 2913 211 60 49 chr12 32849953 32850031 -110936424 - L1ME2 LINE L1 -151 6013 5937 2492 183 26 63 chr12 32850031 32850606 -110935849 + MLT2B3 LTR ERVL 1 554 0 2913 211 60 49 chr12 32850606 32851256 -110935199 - L1ME2 LINE L1 -227 5937 5296 396 0 0 0 chr12 32851256 32851300 -110935155 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 782 155 0 0 chr12 32851302 32851418 -110935037 - FLAM_C SINE Alu -17 116 1 2913 211 60 49 chr12 32851418 32852024 -110934431 - L1ME2 LINE L1 -868 5296 4638 22 0 0 0 chr12 32852044 32852066 -110934389 + AT_rich Low_complexity Low_complexity 1 22 0 2061 114 14 0 chr12 32852088 32852377 -110934078 + AluSx SINE Alu 1 293 -19 935 188 11 0 chr12 32852463 32852639 -110933816 - L1 LINE L1 -3607 2721 2544 7488 177 28 30 chr12 32852644 32854158 -110932297 - L1 LINE L1 -3890 2438 938 1787 176 0 0 chr12 32854158 32854460 -110931995 + AluSx SINE Alu 1 302 -10 7488 177 28 30 chr12 32854460 32855387 -110931068 - L1 LINE L1 -5390 938 10 2417 64 3 3 chr12 32855418 32855729 -110930726 + AluY SINE Alu 1 311 0 262 322 69 0 chr12 32856180 32856267 -110930188 + MIR3 SINE MIR 65 157 -51 23 0 0 0 chr12 32856506 32856529 -110929926 + AT_rich Low_complexity Low_complexity 1 23 0 508 139 0 0 chr12 32856666 32856738 -110929717 - AluY SINE Alu -229 82 11 1027 124 158 6 chr12 32856807 32856984 -110929471 + MSTA LTR MaLR 225 428 0 9487 157 29 24 chr12 32856984 32858628 -110927827 + MSTA-int LTR MaLR 1 1651 0 2633 118 70 0 chr12 32858628 32859028 -110927427 + MSTA LTR MaLR 1 428 0 339 270 120 90 chr12 32859120 32859553 -110926902 + L1MC4 LINE L1 6563 7008 -1034 2101 117 0 3 chr12 32859775 32860074 -110926381 + AluSx SINE Alu 1 298 -14 518 262 247 42 chr12 32860408 32860740 -110925715 - MLT1H LTR MaLR -11 538 139 1625 172 3 14 chr12 32861329 32861619 -110924836 + AluSx SINE Alu 1 287 -25 209 340 38 31 chr12 32861650 32861704 -110924751 - L2 LINE L2 -17 3296 3244 1022 224 82 71 chr12 32861704 32862096 -110924359 - MSTD LTR MaLR 0 396 1 209 340 38 31 chr12 32862096 32862200 -110924255 - L2 LINE L2 -69 3244 3137 273 214 14 14 chr12 32862679 32862749 -110923706 + HsTC2 DNA Tc2 17 86 -1812 665 204 0 102 chr12 32862844 32862958 -110923497 + MER5B DNA MER1_type 18 109 -69 2097 108 7 3 chr12 32862958 32863253 -110923202 - AluSq SINE Alu -17 296 1 665 204 0 102 chr12 32863253 32863314 -110923141 + MER5B DNA MER1_type 109 175 -3 334 239 14 0 chr12 32863324 32863395 -110923060 + Charlie2 DNA MER1_type 9 80 -2782 1517 181 84 3 chr12 32863398 32863707 -110922748 + MER58B DNA MER1_type 2 335 -6 531 206 131 111 chr12 32863707 32863959 -110922496 + Charlie2 DNA MER1_type 72 328 -2454 202 231 0 19 chr12 32863978 32864030 -110922425 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 1169 203 111 6 chr12 32864030 32864119 -110922336 + Charlie2 DNA MER1_type 1900 1978 -884 762 211 0 0 chr12 32864119 32864252 -110922203 + FLAM_A SINE Alu 1 133 0 1169 203 111 6 chr12 32864252 32864477 -110921978 + Charlie2 DNA MER1_type 1978 2247 -615 2261 76 7 7 chr12 32864691 32864994 -110921461 + AluSq SINE Alu 1 303 -10 27 0 0 0 chr12 32866118 32866145 -110920310 + GC_rich Low_complexity Low_complexity 1 27 0 2064 100 0 40 chr12 32867704 32868025 -110918430 + AluSq SINE Alu 5 312 -1 2204 74 7 10 chr12 32868348 32868644 -110917811 - AluY SINE Alu -16 295 1 287 307 95 16 chr12 32868775 32868902 -110917553 + MIR SINE MIR 11 147 -61 214 203 17 17 chr12 32869073 32869132 -110917323 + (TGAA)n Simple_repeat Simple_repeat 4 62 0 327 250 264 0 chr12 32869568 32869708 -110916747 - MIR SINE MIR -26 236 60 818 225 104 26 chr12 32869878 32870109 -110916346 + MIR SINE MIR 8 256 -6 617 260 0 8 chr12 32870497 32870624 -110915831 - LTR39 LTR ERV1 0 783 658 201 344 21 21 chr12 32870626 32870719 -110915736 - L2 LINE L2 -424 2890 2798 3917 145 25 85 chr12 32870722 32871555 -110914900 + LTR39 LTR ERV1 1 783 0 249 238 20 40 chr12 32871680 32871781 -110914674 - L2 LINE L2 -833 2481 2383 1665 245 112 32 chr12 32871832 32872228 -110914227 - MLT1E LTR MaLR -16 577 214 1767 188 142 55 chr12 32872228 32872274 -110914181 - MLT2B2 LTR ERVL -1 514 473 327 49 0 0 chr12 32872274 32872315 -110914140 + (TG)n Simple_repeat Simple_repeat 2 42 0 1767 188 142 55 chr12 32872315 32872520 -110913935 - MLT2B2 LTR ERVL -42 473 287 1989 138 0 0 chr12 32872520 32872811 -110913644 - AluSx SINE Alu -21 291 1 1767 188 142 55 chr12 32872811 32873031 -110913424 - MLT2B2 LTR ERVL -228 287 1 1665 245 112 32 chr12 32873031 32873168 -110913287 - MLT1E LTR MaLR -379 214 1 738 247 72 31 chr12 32873170 32873393 -110913062 - MIR SINE MIR -30 232 1 198 243 122 0 chr12 32873396 32873470 -110912985 - L2 LINE L2 -1001 2313 2231 871 222 4 94 chr12 32873579 32873845 -110912610 + MER87 LTR ERV1 1 242 -299 24 32 0 0 chr12 32873868 32873899 -110912556 + AT_rich Low_complexity Low_complexity 1 31 0 1235 241 35 22 chr12 32873899 32874210 -110912245 + MER87 LTR ERV1 227 541 0 210 310 17 0 chr12 32874241 32874299 -110912156 - L2 LINE L2 -9 3263 3205 23 0 0 0 chr12 32875297 32875320 -110911135 + AT_rich Low_complexity Low_complexity 1 23 0 2361 11 0 28 chr12 32875321 32875606 -110910849 - AluYa5 SINE Alu 0 311 35 248 250 28 156 chr12 32875943 32876053 -110910402 - MER5B DNA MER1_type -18 160 80 183 42 0 0 chr12 32876053 32876077 -110910378 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 248 250 28 156 chr12 32876077 32876146 -110910309 - MER5B DNA MER1_type -98 80 4 471 182 0 0 chr12 32876154 32876231 -110910224 + MER5A DNA MER1_type 3 79 -110 1140 163 31 182 chr12 32876233 32876977 -110909478 + MER4A LTR ERV1 1 465 0 492 273 9 0 chr12 32876977 32877087 -110909368 + MER5A DNA MER1_type 78 188 -1 2469 128 24 69 chr12 32877628 32878137 -110908318 - LTR19A LTR ERV1 0 486 1 280 312 85 18 chr12 32878477 32878759 -110907696 + L1ME LINE L1 5484 5784 -337 735 242 89 5 chr12 32878910 32879100 -110907355 - MIR SINE MIR -52 210 5 1153 203 139 102 chr12 32879476 32879958 -110906497 + MLT1H LTR MaLR 1 549 0 2159 125 7 7 chr12 32880503 32880808 -110905647 + AluSx SINE Alu 1 305 -7 2764 179 19 10 chr12 32880883 32881458 -110904997 - L1MB5 LINE L1 -8 6166 5587 22 0 0 0 chr12 32881649 32881671 -110904784 + AT_rich Low_complexity Low_complexity 1 22 0 445 276 6 6 chr12 32881755 32881925 -110904530 + L1M4 LINE L1 2380 2549 -3597 3559 121 62 12 chr12 32883196 32883777 -110902678 + MER4B LTR ERV1 1 610 0 194 62 31 0 chr12 32883781 32883813 -110902642 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 1552 134 5 77 chr12 32883849 32884221 -110902234 - MER4A LTR ERV1 0 664 261 598 103 21 10 chr12 32884221 32884318 -110902137 - MER4A LTR ERV1 -566 98 1 13940 119 112 103 chr12 32884326 32886364 -110900091 - MER4A-int LTR ERV1 -2 6596 4578 1301 119 0 11 chr12 32886364 32886549 -110899906 - AluSg/x SINE Alu 0 310 128 13940 119 112 103 chr12 32886549 32887845 -110898610 - MER4A-int LTR ERV1 -2020 4578 3295 2015 139 35 0 chr12 32887845 32888133 -110898322 - AluSq SINE Alu -15 298 1 13940 119 112 103 chr12 32888133 32889502 -110896953 - MER4A-int LTR ERV1 -3303 3295 1940 1989 153 3 0 chr12 32889502 32889790 -110896665 + AluSx SINE Alu 1 289 -23 13940 119 112 103 chr12 32889790 32891129 -110895326 - MER4A-int LTR ERV1 -4658 1940 1 1649 139 3 77 chr12 32891131 32891504 -110894951 - MER4A LTR ERV1 0 664 261 534 155 21 10 chr12 32891504 32891601 -110894854 - MER4A LTR ERV1 -566 98 1 876 224 6 0 chr12 32892189 32892363 -110894092 - FRAM SINE Alu -1 175 1 193 346 19 0 chr12 32892462 32892514 -110893941 - L2 LINE L2 -92 3180 3128 1631 281 78 59 chr12 32892556 32893563 -110892892 + HAL1 LINE L1 4 1029 -1478 519 180 135 18 chr12 32893586 32893697 -110892758 + FLAM_A SINE Alu 1 124 -9 336 243 36 29 chr12 32893932 32894072 -110892383 + HAL1b LINE L1 481 621 -727 928 295 113 28 chr12 32894979 32895403 -110891052 - L2 LINE L2 0 3313 2854 1562 217 116 9 chr12 32895405 32895896 -110890559 - MLT1E LTR MaLR 0 593 1 587 333 78 13 chr12 32895913 32896222 -110890233 - L2 LINE L2 -483 2831 2503 351 259 37 9 chr12 32896243 32896351 -110890104 - MIR SINE MIR -146 116 6 426 255 128 0 chr12 32896846 32896987 -110889468 - MIR SINE MIR 0 262 104 313 246 0 0 chr12 32897677 32897742 -110888713 - LTR16C LTR ERVL -194 297 233 866 268 80 21 chr12 32897961 32898225 -110888230 + L1MC4a LINE L1 5493 5678 -443 512 237 0 0 chr12 32898225 32898356 -110888099 - L1PB4 LINE L1 0 6156 6026 866 268 80 21 chr12 32898356 32898470 -110887985 + L1MC4a LINE L1 5678 5784 -337 255 163 41 0 chr12 32898983 32899032 -110887423 + MER74B LTR ERVL 3 53 -569 961 253 15 11 chr12 32899094 32899359 -110887096 + MER74B LTR ERVL 193 458 -164 263 125 109 16 chr12 32899523 32899587 -110886868 - MLT1C LTR MaLR 0 467 398 1387 191 50 47 chr12 32899674 32899893 -110886562 - MLT1C LTR MaLR -63 404 182 2473 66 0 7 chr12 32899893 32900196 -110886259 - AluY SINE Alu -10 301 1 1387 191 50 47 chr12 32900196 32900379 -110886076 - MLT1C LTR MaLR -285 182 1 4372 137 39 33 chr12 32900379 32900644 -110885811 - L1MB8 LINE L1 -35 6143 5881 2016 135 0 14 chr12 32900644 32900964 -110885491 - AluSq SINE Alu 0 313 2 4372 137 39 33 chr12 32900964 32901109 -110885346 - L1MB8 LINE L1 -297 5881 5738 2173 84 3 36 chr12 32901109 32901418 -110885037 - AluSg1 SINE Alu -10 299 1 4372 137 39 33 chr12 32901418 32902056 -110884399 - L1MB8 LINE L1 -440 5738 5088 246 95 0 0 chr12 32902430 32902472 -110883983 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 2187 80 4 0 chr12 32902474 32902749 -110883706 - AluY SINE Alu -30 281 6 619 266 70 41 chr12 32903038 32903354 -110883101 - L1ME4a LINE L1 -195 5926 5602 640 224 21 68 chr12 32903774 32903966 -110882489 - MIR SINE MIR -77 185 3 2249 118 0 3 chr12 32904366 32904672 -110881783 - AluSq SINE Alu -8 305 1 400 294 116 27 chr12 32905113 32905259 -110881196 + L2 LINE L2 3114 3272 0 1871 130 4 4 chr12 32905795 32906095 -110880360 - AluSx SINE Alu 0 305 6 485 269 104 111 chr12 32907135 32907988 -110878467 - L1M2 LINE L1 -5603 1246 493 2390 84 3 10 chr12 32910158 32910468 -110875987 + AluSq SINE Alu 3 310 -3 1154 178 4 61 chr12 32910701 32910932 -110875523 - MER20 DNA MER1_type -1 218 1 1425 278 127 30 chr12 32912581 32913566 -110872889 + L2 LINE L2 2219 3305 -8 10594 117 40 10 chr12 32913743 32914678 -110871777 - Tigger1 DNA MER2_type -1 2417 1403 2361 89 3 0 chr12 32914678 32914982 -110871473 - AluSp SINE Alu -8 305 1 10594 117 40 10 chr12 32914982 32915802 -110870653 - Tigger1 DNA MER2_type -1015 1403 609 786 163 0 44 chr12 32915804 32915964 -110870491 - L1MC1 LINE L1 -88 6245 6093 860 145 53 26 chr12 32915976 32916128 -110870327 - FRAM SINE Alu -21 155 1 546 144 62 0 chr12 32916128 32916225 -110870230 - L1MC2 LINE L1 -238 6106 6004 363 254 90 8 chr12 32916716 32916838 -110869617 - L1M4 LINE L1 -3139 3007 2876 24 53 0 0 chr12 32917020 32917058 -110869397 + AT_rich Low_complexity Low_complexity 1 38 0 760 333 90 58 chr12 32917518 32918609 -110867846 - L2 LINE L2 -1 3271 2105 447 308 30 0 chr12 32918632 32918765 -110867690 - MIR SINE MIR -22 240 104 329 310 190 43 chr12 32918747 32919395 -110867060 - L2 LINE L2 -1212 2102 1360 * 256 328 67 39 chr12 32919941 32920121 -110866334 - L1ME LINE L1 -504 5660 5476 311 264 39 23 chr12 32920131 32920260 -110866195 - L1MB8 LINE L1 -14 6164 6034 1485 162 92 0 chr12 32920274 32920589 -110865866 - L1MB8 LINE L1 -212 5972 5629 763 234 6 0 chr12 32922091 32922262 -110864193 - FRAM SINE Alu -12 164 1 316 246 197 8 chr12 32922521 32922643 -110863812 - MIR SINE MIR -21 241 97 1200 68 0 0 chr12 32922644 32922792 -110863663 - AluY SINE Alu -11 300 153 5793 109 20 8 chr12 32922811 32923955 -110862500 - L1PA13 LINE L1 -11 6152 5007 314 319 0 0 chr12 32923958 32924030 -110862425 - MIR SINE MIR -157 105 34 2501 63 0 0 chr12 32924481 32924784 -110861671 + AluY SINE Alu 1 303 -8 418 242 61 0 chr12 32924967 32925066 -110861389 - L2 LINE L2 -5 3267 3163 1670 192 38 0 chr12 32925084 32925371 -110861084 + AluJo SINE Alu 1 298 -14 2055 152 0 0 chr12 32926222 32926519 -110859936 - AluJb SINE Alu -15 297 1 30 0 0 0 chr12 32926607 32926637 -110859818 + AT_rich Low_complexity Low_complexity 1 30 0 354 100 0 0 chr12 32927468 32927528 -110858927 + (TG)n Simple_repeat Simple_repeat 2 61 0 1590 203 175 15 chr12 32929429 32929965 -110856490 + L1ME1 LINE L1 5536 6157 -9 232 200 0 36 chr12 32930546 32930601 -110855854 - MIR SINE MIR -64 144 92 888 277 27 16 chr12 32932186 32932442 -110854013 + MIR SINE MIR 4 262 0 2215 116 0 3 chr12 32933795 32934105 -110852350 - AluY SINE Alu -2 309 1 283 273 67 13 chr12 32935853 32936003 -110850452 + MER104 DNA Tc2 23 180 0 429 268 121 45 chr12 32936465 32936663 -110849792 + MIR SINE MIR 1 213 -49 237 293 40 73 chr12 32936711 32936861 -110849594 - L2 LINE L2 -25 3288 3144 1719 177 3 16 chr12 32937364 32937669 -110848786 - AluJo SINE Alu -11 301 1 2071 114 3 23 chr12 32939452 32939759 -110846696 - AluSg1 SINE Alu -8 301 1 180 333 116 0 chr12 32940016 32940085 -110846370 + MER5B DNA MER1_type 73 149 -29 877 254 37 14 chr12 32941157 32941374 -110845081 + MIR SINE MIR 26 247 -15 2042 138 24 0 chr12 32941994 32942291 -110844164 + AluSx SINE Alu 1 304 -8 271 294 110 25 chr12 32944398 32944561 -110841894 - L2 LINE L2 -42 3271 3095 4651 151 44 5 chr12 32944776 32945600 -110840855 - L1MB4 LINE L1 0 6180 5325 2379 140 23 10 chr12 32946675 32947067 -110839388 - L1MB3 LINE L1 -2 6181 5785 1600 206 3 7 chr12 32947895 32948201 -110838254 + AluJo SINE Alu 1 305 -7 347 292 92 0 chr12 32948857 32948987 -110837468 - MIR SINE MIR -119 143 2 2288 88 10 10 chr12 32949336 32949644 -110836811 + AluSq SINE Alu 1 308 -5 373 312 39 48 chr12 32949659 32949890 -110836565 + MIR SINE MIR 34 262 0 31 58 0 0 chr12 32950258 32950310 -110836145 + AT_rich Low_complexity Low_complexity 1 52 0 214 284 63 32 chr12 32951627 32951722 -110834733 + MIR3 SINE MIR 88 185 -23 487 250 80 81 chr12 32953224 32953475 -110832980 + MIR SINE MIR 3 250 -12 2305 101 0 0 chr12 32953582 32953880 -110832575 + AluSx SINE Alu 1 298 -14 2367 163 74 52 chr12 32953990 32954488 -110831967 - LTR22 LTR ERVK 0 509 1 1755 163 10 7 chr12 32955862 32956151 -110830304 + AluJb SINE Alu 2 291 -21 571 268 144 17 chr12 32956583 32956831 -110829624 - HAL1 LINE L1 -1197 1310 1004 1934 154 82 3 chr12 32956831 32957150 -110829305 + MER2 DNA MER2_type 1 344 0 571 268 144 17 chr12 32957150 32957248 -110829207 - HAL1 LINE L1 -1503 1004 920 394 284 123 0 chr12 32958316 32958433 -110828022 + L1MC/D LINE L1 5475 5619 -2189 432 0 0 0 chr12 32958433 32958481 -110827974 + (CA)n Simple_repeat Simple_repeat 2 49 0 394 284 123 0 chr12 32958481 32958525 -110827930 + L1MC/D LINE L1 5619 5656 -2152 1861 143 0 38 chr12 32958934 32959115 -110827340 - AluJb SINE Alu -10 302 137 2146 117 10 3 chr12 32959115 32959415 -110827040 - AluSx SINE Alu -10 302 1 1861 143 0 38 chr12 32959415 32959547 -110826908 - AluJb SINE Alu -175 137 1 183 245 38 19 chr12 32959549 32959602 -110826853 - MIR SINE MIR -58 204 151 24 0 0 0 chr12 32960214 32960238 -110826217 + AT_rich Low_complexity Low_complexity 1 24 0 1205 199 26 22 chr12 32960248 32960479 -110825976 - MER8 DNA MER2_type 0 239 8 2230 119 3 3 chr12 32960524 32960834 -110825621 - AluSx SINE Alu -2 310 1 262 306 162 46 chr12 32961305 32961589 -110824866 + L2 LINE L2 2297 2613 -701 204 333 0 46 chr12 32961590 32961677 -110824778 - L2 LINE L2 0 3313 3231 4247 154 46 7 chr12 32962162 32962894 -110823561 - L1MD1 LINE L1 -9 6233 5473 385 269 116 37 chr12 32962963 32963179 -110823276 - L2 LINE L2 -954 2360 2128 1480 185 38 4 chr12 32963294 32963559 -110822896 + AluJb SINE Alu 1 274 -38 339 25 0 0 chr12 32963596 32963636 -110822819 + (CA)n Simple_repeat Simple_repeat 2 41 0 180 0 0 0 chr12 32963635 32963655 -110822800 + (CG)n Simple_repeat Simple_repeat 1 20 0 * 224 299 45 57 chr12 32963669 32963846 -110822609 - L2 LINE L2 -1365 1949 1775 3743 125 50 7 chr12 32965122 32965737 -110820718 - LTR1 LTR ERV1 0 785 144 1309 105 6 0 chr12 32965744 32965925 -110820530 - L1M2 LINE L1 -478 5813 5632 2291 145 54 10 chr12 32965926 32966333 -110820122 + L1MA8 LINE L1 5867 6291 0 293 310 56 76 chr12 32966704 32966901 -110819554 - MIR3 SINE MIR -7 201 9 502 273 56 0 chr12 32966942 32967085 -110819370 - MIR SINE MIR -10 252 102 364 269 38 67 chr12 32967978 32968174 -110818281 + MIR SINE MIR 8 192 -50 310 173 284 12 chr12 32968853 32968961 -110817494 + MIR SINE MIR 41 174 -67 410 212 51 88 chr12 32969084 32969112 -110817343 - MIR SINE MIR -27 235 208 1527 201 0 0 chr12 32969112 32969351 -110817104 + MER8 DNA MER2_type 1 239 0 2128 124 62 19 chr12 32969361 32969684 -110816771 - MER1B DNA MER1_type 0 337 1 410 212 51 88 chr12 32969684 32969781 -110816674 - MIR SINE MIR -63 199 104 204 67 0 0 chr12 32970108 32970138 -110816317 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 2095 115 10 30 chr12 32971184 32971488 -110814967 - AluSx SINE Alu -14 298 1 278 257 43 0 chr12 32971826 32971896 -110814559 - MER91 DNA MER1_type -67 73 1 748 204 141 74 chr12 32972294 32972586 -110813869 + MLT1J LTR MaLR 5 339 -172 1015 137 74 6 chr12 32972586 32972761 -110813694 - MER5A DNA MER1_type 0 189 3 748 204 141 74 chr12 32972761 32972915 -110813540 + MLT1J LTR MaLR 339 481 -30 315 201 69 132 chr12 32974000 32974144 -110812311 - L2 LINE L2 -2 3270 3136 2150 97 0 0 chr12 32974787 32975065 -110811390 + AluSq SINE Alu 33 310 -3 315 273 101 58 chr12 32975495 32975634 -110810821 + MIR SINE MIR 7 151 -57 1434 114 64 18 chr12 32975675 32975895 -110810560 + MER30 DNA MER1_type 1 230 0 827 61 0 0 chr12 32975956 32976055 -110810400 + THE1A LTR MaLR 256 354 -1 266 203 159 0 chr12 32977038 32977107 -110809348 + MIR SINE MIR 73 153 -55 252 191 29 29 chr12 32977134 32977202 -110809253 + MIR SINE MIR 68 135 -127 1937 158 31 31 chr12 32977982 32978369 -110808086 + MER45B DNA AcHobo 654 1040 0 303 272 0 37 chr12 32978426 32978507 -110807948 - L2 LINE L2 -5 3308 3231 2455 89 0 0 chr12 32978539 32978841 -110807614 - AluSx SINE Alu -10 302 1 463 300 12 1 chr12 32979851 32979990 -110806465 - MIR SINE MIR -58 150 6 380 228 256 39 chr12 32981450 32981704 -110804751 - L2 LINE L2 0 3313 3005 202 259 129 26 chr12 32981719 32981835 -110804620 - MIR SINE MIR -61 147 20 829 266 46 19 chr12 32985291 32985550 -110800905 + LTR16A LTR ERVL 178 443 -7 1372 188 65 27 chr12 32985974 32986342 -110800113 - MER3 DNA MER1_type 0 2615 2234 651 178 31 31 chr12 32986345 32986474 -110799981 - MER3 DNA MER1_type -41 168 40 2386 147 40 19 chr12 32986986 32987409 -110799046 + MSTB1 LTR MaLR 1 432 0 396 0 0 0 chr12 32987825 32987869 -110798586 + (CA)n Simple_repeat Simple_repeat 2 45 0 2590 68 0 0 chr12 32988011 32988320 -110798135 - AluY SINE Alu -2 309 1 207 0 0 0 chr12 32989182 32989205 -110797250 + (T)n Simple_repeat Simple_repeat 1 23 0 296 301 0 48 chr12 32989673 32989730 -110796725 - L1ME LINE L1 -328 5793 5735 2307 96 7 3 chr12 32989730 32990031 -110796424 - AluSx SINE Alu -10 302 1 296 301 0 48 chr12 32990031 32990139 -110796316 - L1ME LINE L1 -386 5735 5636 233 310 46 0 chr12 32990194 32990281 -110796174 - L1MC4 LINE L1 -1337 6705 6615 317 250 68 34 chr12 32990797 32990973 -110795482 + L1M4 LINE L1 2173 2354 -3792 2309 106 3 0 chr12 32991012 32991313 -110795142 - AluSx SINE Alu -10 302 1 1224 148 16 146 chr12 32991432 32991664 -110794791 + MER33 DNA MER1_type 2 170 -2415 1555 98 5 0 chr12 32991664 32991888 -110794567 + L1PA14 LINE L1 5936 6160 -1 1224 148 16 146 chr12 32991888 32992026 -110794429 + MER33 DNA MER1_type 170 324 0 234 128 0 0 chr12 32993180 32993219 -110793236 + (TC)n Simple_repeat Simple_repeat 1 39 0 719 280 0 0 chr12 32993273 32993430 -110793025 + MER45A DNA AcHobo 1 157 -21 319 363 28 32 chr12 32993645 32993893 -110792562 + L2 LINE L2 2832 3078 -194 404 345 60 12 chr12 32994384 32994552 -110791903 + MER91A DNA MER1_type 16 191 -5 217 325 62 0 chr12 32994594 32994674 -110791781 + L2 LINE L2 3156 3240 -32 233 296 176 0 chr12 32995135 32995243 -110791212 - MIR3 SINE MIR -15 193 67 198 313 0 0 chr12 32995844 32995908 -110790547 - MIR3 SINE MIR -35 173 110 195 152 0 0 chr12 32995914 32995960 -110790495 + GA-rich Low_complexity Low_complexity 2 47 0 539 287 75 32 chr12 32996126 32996408 -110790047 - L2 LINE L2 0 3313 3020 1777 146 69 39 chr12 32996430 32996794 -110789661 + THE1C LTR MaLR 1 375 0 555 312 32 28 chr12 32996903 32997150 -110789305 - L2 LINE L2 -437 2877 2630 198 0 0 0 chr12 32997507 32997529 -110788926 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 755 186 0 0 chr12 32997529 32997647 -110788808 - FLAM_C SINE Alu -23 120 3 441 260 118 39 chr12 32997849 32998103 -110788352 - L2 LINE L2 -10 3303 3030 239 329 109 7 chr12 32998740 32998877 -110787578 + MIR SINE MIR 34 184 -78 420 37 0 0 chr12 32999220 32999274 -110787181 + (TG)n Simple_repeat Simple_repeat 2 55 0 240 313 0 16 chr12 32999298 32999362 -110787093 - L2 LINE L2 -25 3247 3185 541 219 74 107 chr12 32999434 32999741 -110786714 + MLT1L LTR MaLR 99 466 -149 564 231 14 0 chr12 32999768 32999911 -110786544 - MER104 DNA Tc2 -30 150 6 455 218 45 9 chr12 32999927 33000037 -110786418 + MLT1J LTR MaLR 391 504 -7 292 231 67 58 chr12 33000043 33000147 -110786308 - MIR SINE MIR -79 183 79 441 92 40 13 chr12 33001080 33001156 -110785299 - LTR15 LTR ERV1 -6 487 410 4921 182 78 24 chr12 33001932 33002457 -110783998 - L1MD1 LINE L1 0 6242 5747 1725 178 3 25 chr12 33002457 33002771 -110783684 - AluJo SINE Alu -3 309 3 4921 182 78 24 chr12 33002771 33003293 -110783162 - L1MD1 LINE L1 -495 5747 5255 2440 71 10 0 chr12 33003293 33003589 -110782866 - AluY SINE Alu -12 299 1 4921 182 78 24 chr12 33003589 33004082 -110782373 - L1MD1 LINE L1 -987 5255 4602 208 0 30 30 chr12 33004082 33004115 -110782340 + (TA)n Simple_repeat Simple_repeat 2 34 0 4921 182 78 24 chr12 33004115 33004284 -110782171 - L1MD1 LINE L1 -1640 4602 4444 526 145 179 17 chr12 33004285 33004402 -110782053 + MLT1A1 LTR MaLR 2 137 -228 248 331 21 21 chr12 33004458 33004600 -110781855 - MLT1L LTR MaLR -8 607 466 402 184 128 9 chr12 33004696 33004805 -110781650 - MLT1L LTR MaLR -327 288 167 335 313 173 7 chr12 33004861 33005011 -110781444 - MER20B DNA MER1_type -608 175 1 562 256 30 6 chr12 33005131 33005295 -110781160 - MIR SINE MIR -3 259 92 1553 158 4 8 chr12 33005371 33005648 -110780807 - AluSx SINE Alu 0 305 30 587 108 11 0 chr12 33006266 33006359 -110780096 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 441 0 0 0 chr12 33007011 33007060 -110779395 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 516 164 46 186 chr12 33007933 33008196 -110778259 - L1MC4 LINE L1 -263 7779 7554 646 260 20 30 chr12 33008289 33008489 -110777966 - MIR SINE MIR -62 200 3 198 0 0 0 chr12 33008613 33008635 -110777820 + (TG)n Simple_repeat Simple_repeat 1 22 0 1954 139 81 23 chr12 33008914 33009258 -110777197 - THE1B LTR MaLR 0 364 1 336 304 27 0 chr12 33009320 33009432 -110777023 - MIR3 SINE MIR -41 167 53 245 244 105 12 chr12 33009603 33009689 -110776766 - L2 LINE L2 -1 3271 3178 510 148 241 19 chr12 33009692 33009800 -110776655 + FLAM_C SINE Alu 1 132 -1 492 110 20 20 chr12 33009805 33009905 -110776550 + (GAAA)n Simple_repeat Simple_repeat 1 100 0 181 219 62 0 chr12 33010772 33010836 -110775619 - MIR SINE MIR -42 220 153 1498 200 74 99 chr12 33010840 33010891 -110775564 - LTR8A LTR ERV1 0 727 676 2073 139 0 0 chr12 33010891 33011185 -110775270 + AluSx SINE Alu 1 294 -18 1498 200 74 99 chr12 33011185 33011688 -110774767 - LTR8A LTR ERV1 -51 676 187 335 182 91 26 chr12 33011748 33011825 -110774630 - LTR8 LTR ERV1 -609 82 1 480 289 30 0 chr12 33011830 33011965 -110774490 - MIR SINE MIR -115 147 9 406 289 20 27 chr12 33012025 33012174 -110774281 + L2 LINE L2 3162 3309 -4 1025 258 111 11 chr12 33012379 33012926 -110773529 - L2 LINE L2 0 3313 2707 266 304 161 9 chr12 33012947 33013059 -110773396 + L2 LINE L2 3126 3254 -18 189 343 59 46 chr12 33013243 33013482 -110772973 - L2 LINE L2 -337 2977 2736 27293 100 13 10 chr12 33015268 33019152 -110767303 + L1PA6 LINE L1 22 3914 -2232 571 76 0 0 chr12 33019152 33019231 -110767224 + L1PA5 LINE L1 6075 6153 -1 * 11450 60 12 10 chr12 33019230 33020795 -110765660 + L1PA6 LINE L1 3912 5490 -664 2325 101 0 3 chr12 33020795 33021093 -110765362 + AluY SINE Alu 1 297 -14 11450 60 12 10 chr12 33021093 33021760 -110764695 + L1PA6 LINE L1 5490 6154 0 274 248 79 0 chr12 33021897 33021998 -110764457 - L1MC4 LINE L1 -5 8037 7929 30 69 0 0 chr12 33022141 33022199 -110764256 + AT_rich Low_complexity Low_complexity 1 58 0 431 271 33 81 chr12 33022337 33022547 -110763908 - L1ME3A LINE L1 -60 6110 5911 860 253 58 35 chr12 33022573 33022921 -110763534 - L1M4 LINE L1 -3529 3638 3283 6870 209 22 20 chr12 33022927 33024846 -110761609 - L1M4 LINE L1 -4326 2842 907 223 322 119 0 chr12 33025245 33025363 -110761092 + MIR SINE MIR 7 138 -124 1478 172 113 59 chr12 33025463 33025905 -110760550 - MER110A LTR ERV1 0 468 3 1872 198 47 21 chr12 33026076 33026500 -110759955 - MLT1C LTR MaLR -27 440 6 435 230 33 46 chr12 33026838 33026990 -110759465 + MER112 DNA MER1_type 100 249 -11 299 338 21 28 chr12 33028020 33028165 -110758290 + MIR3 SINE MIR 24 167 -41 417 158 0 0 chr12 33028165 33028247 -110758208 + CT-rich Low_complexity Low_complexity 2 83 0 1221 106 0 0 chr12 33028247 33028427 -110758028 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 282 289 35 9 chr12 33029954 33030068 -110756387 - MIR SINE MIR -139 123 7 1490 77 0 0 chr12 33030149 33030331 -110756124 + AluSg/x SINE Alu 121 302 -10 207 0 0 0 chr12 33030653 33030676 -110755779 + (TGGG)n Simple_repeat Simple_repeat 3 25 0 2150 113 31 0 chr12 33031290 33031581 -110754874 + AluSx SINE Alu 3 302 -10 549 305 6 23 chr12 33031860 33032037 -110754418 - MIR3 SINE MIR -28 180 7 484 235 26 9 chr12 33032249 33032364 -110754091 - MIR3 SINE MIR -49 159 43 811 172 23 35 chr12 33032532 33032706 -110753749 - MER104 DNA MER2_type -4 176 5 385 259 38 98 chr12 33032877 33033076 -110753379 + MIR SINE MIR 20 203 -59 341 329 21 35 chr12 33033719 33033912 -110752543 + MIR SINE MIR 3 192 -62 601 265 157 10 chr12 33034099 33034303 -110752152 + MIR SINE MIR 16 249 -13 479 216 6 23 chr12 33034809 33034985 -110751470 + CT-rich Low_complexity Low_complexity 6 178 0 875 241 34 65 chr12 33035006 33035421 -110751034 - L1MC5 LINE L1 -51 7910 7509 305 299 30 34 chr12 33036184 33036344 -110750111 - MIR SINE MIR -28 234 76 1345 195 50 44 chr12 33036394 33036441 -110750014 + MER88 LTR ERVL 79 124 -340 1228 84 200 5 chr12 33036441 33036631 -110749824 - MER30 DNA MER1_type 0 230 4 1345 195 50 44 chr12 33036631 33036967 -110749488 + MER88 LTR ERVL 124 464 0 222 222 143 0 chr12 33037033 33037096 -110749359 - MIR3 SINE MIR -36 172 101 215 267 17 17 chr12 33037432 33037492 -110748963 - L3 LINE CR1 -7 1570 1511 308 303 22 0 chr12 33038185 33038274 -110748181 + (CACG)n Simple_repeat Simple_repeat 4 94 0 214 313 83 10 chr12 33039392 33039488 -110746967 + MIR SINE MIR 20 122 -86 1854 150 41 10 chr12 33041989 33042108 -110744347 + AluJo SINE Alu 1 115 -197 180 0 0 0 chr12 33042108 33042128 -110744327 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1854 150 41 10 chr12 33042128 33042302 -110744153 + AluJo SINE Alu 115 303 -9 269 239 36 65 chr12 33042952 33043090 -110743365 - L2 LINE L2 -219 3053 2920 550 316 19 0 chr12 33043643 33043801 -110742654 + MIR SINE MIR 1 161 -101 520 226 35 0 chr12 33044811 33044926 -110741529 - MER20 DNA MER1_type 0 219 101 232 418 22 8 chr12 33045130 33045264 -110741191 - L2 LINE L2 -10 3262 3127 241 215 58 8 chr12 33045530 33045614 -110740841 - L2 LINE L2 -290 2982 2898 225 278 0 0 chr12 33046842 33046896 -110739559 + MER91 DNA MER1_type 54 107 -89 246 179 0 36 chr12 33047478 33047534 -110738921 + Zaphod DNA AcHobo 3978 4031 0 472 339 102 42 chr12 33048452 33048883 -110737572 + L2 LINE L2 2813 3269 -3 389 311 17 8 chr12 33050218 33050337 -110736118 + MIR SINE MIR 26 145 -117 904 188 94 5 chr12 33050803 33050995 -110735460 - MER3 DNA MER1_type 0 209 1 410 220 30 20 chr12 33051900 33052000 -110734455 - MIR SINE MIR -33 229 129 238 352 7 7 chr12 33053969 33054111 -110732344 + (TG)n Simple_repeat Simple_repeat 1 142 0 186 103 0 0 chr12 33054123 33054152 -110732303 + (TG)n Simple_repeat Simple_repeat 2 30 0 1466 152 67 18 chr12 33054154 33054437 -110732018 - MER2 DNA MER2_type -1 344 48 533 289 132 0 chr12 33054760 33054964 -110731491 + MIR SINE MIR 20 250 -12 2101 122 6 3 chr12 33055078 33055389 -110731066 - AluSx SINE Alu 0 312 1 377 231 194 0 chr12 33055392 33055500 -110730955 - MIR SINE MIR -60 148 20 577 268 67 10 chr12 33055695 33055889 -110730566 + MIR SINE MIR 58 262 0 394 305 34 8 chr12 33056784 33056902 -110729553 + MIR3 SINE MIR 34 154 -54 184 321 86 12 chr12 33057163 33057244 -110729211 + L3 LINE CR1 224 310 -1267 620 365 96 58 chr12 33057250 33057873 -110728582 + L3 LINE CR1 417 1098 -479 2051 94 11 0 chr12 33057873 33058148 -110728307 + AluSc SINE Alu 16 293 -16 620 365 96 58 chr12 33058148 33058587 -110727868 + L3 LINE CR1 1098 1519 -58 2105 106 3 7 chr12 33058840 33059142 -110727313 + AluSg SINE Alu 1 301 -9 261 353 17 25 chr12 33059154 33059273 -110727182 - MER5B DNA MER1_type -60 118 1 258 277 135 14 chr12 33059273 33059402 -110727053 - MIR3 SINE MIR -51 157 12 527 283 71 80 chr12 33059606 33059931 -110726524 - L2 LINE L2 -32 3240 2919 289 274 53 11 chr12 33060077 33060172 -110726283 - MIR SINE MIR -68 140 42 216 135 0 0 chr12 33060669 33060706 -110725749 + (TG)n Simple_repeat Simple_repeat 1 37 0 308 184 105 13 chr12 33062017 33062093 -110724362 + MER5A DNA MER1_type 19 101 -88 433 274 123 0 chr12 33062156 33062302 -110724153 + MER5A DNA MER1_type 2 165 -24 221 326 113 14 chr12 33065242 33065383 -110721072 - MIR SINE MIR -13 249 95 906 140 67 11 chr12 33066266 33066445 -110720010 - MER5A DNA MER1_type 0 189 1 2153 108 150 26 chr12 33067860 33068241 -110718214 - MSTA LTR MaLR 0 428 1 1720 106 0 157 chr12 33069494 33069569 -110716886 - MER47A DNA MER2_type -1957 366 281 1902 144 16 13 chr12 33069569 33069875 -110716580 + AluJo SINE Alu 6 312 0 1720 106 0 157 chr12 33069875 33070233 -110716222 - MER47A DNA MER2_type -2042 281 1 527 315 73 23 chr12 33070953 33071172 -110715283 - MIR SINE MIR -13 249 20 358 344 57 54 chr12 33071443 33072126 -110714329 + L2 LINE L2 2500 3259 -13 266 333 141 15 chr12 33078650 33078848 -110707607 - L3 LINE CR1 -166 1411 1189 207 362 45 59 chr12 33079667 33080021 -110706434 + L2 LINE L2 2889 3237 -35 448 315 31 0 chr12 33080321 33080448 -110706007 + MIR3 SINE MIR 69 199 -9 365 219 164 68 chr12 33080456 33080602 -110705853 - MIR SINE MIR -73 189 30 183 247 212 0 chr12 33080683 33080768 -110705687 - MIR SINE MIR -71 191 89 1744 167 10 17 chr12 33081042 33081342 -110705113 + AluJb SINE Alu 1 298 -14 1345 108 0 11 chr12 33081640 33081826 -110704629 + AluSx SINE Alu 1 184 -128 246 176 0 67 chr12 33083357 33083427 -110703028 + MIR SINE MIR 95 158 -104 180 285 217 64 chr12 33083593 33083846 -110702609 - L2 LINE L2 0 3272 2966 1279 167 76 58 chr12 33083846 33084156 -110702299 + AluJb SINE Alu 5 319 0 180 285 217 64 chr12 33084156 33084196 -110702259 - L2 LINE L2 -306 2966 2933 1334 147 64 0 chr12 33084339 33084590 -110701865 + MER33 DNA MER1_type 1 254 -70 210 358 91 41 chr12 33084876 33085097 -110701358 - MIR SINE MIR -30 232 1 497 118 0 0 chr12 33086572 33086648 -110699807 + FLAM_A SINE Alu 47 122 -20 22 0 0 0 chr12 33086649 33086671 -110699784 + AT_rich Low_complexity Low_complexity 1 22 0 1243 203 38 14 chr12 33086674 33086965 -110699490 + L1MB3 LINE L1 5883 6180 -3 376 139 0 47 chr12 33086982 33087068 -110699387 + (GGAAA)n Simple_repeat Simple_repeat 2 83 0 780 143 14 110 chr12 33087212 33087421 -110699034 - MER53 DNA DNA 0 189 1 1539 209 44 9 chr12 33087583 33087932 -110698523 + MLT1A2 LTR MaLR 1 443 -14 216 260 54 0 chr12 33088082 33088175 -110698280 + MIR SINE MIR 63 164 -98 664 168 6 6 chr12 33088312 33088491 -110697964 + (CA)n Simple_repeat Simple_repeat 1 179 0 818 246 92 29 chr12 33089579 33089784 -110696671 + MIR SINE MIR 4 228 -34 2422 149 22 0 chr12 33089784 33090192 -110696263 + L1MB5 LINE L1 5746 6162 -12 818 246 92 29 chr12 33090192 33090226 -110696229 + MIR SINE MIR 228 258 -4 414 316 45 65 chr12 33090634 33091036 -110695419 - MLT1J LTR MaLR -6 505 112 295 254 18 35 chr12 33091125 33091239 -110695216 - L2 LINE L2 -219 3053 2942 712 222 214 40 chr12 33091257 33091627 -110694828 - MLT1J2 LTR MaLR -16 434 1 414 281 269 21 chr12 33092032 33092274 -110694181 - L3 LINE CR1 -21 1556 1255 2203 208 35 22 chr12 33092462 33092971 -110693484 - LTR40a LTR ERVL 0 519 4 1492 261 136 28 chr12 33093311 33093986 -110692469 + L1PBa LINE L1 6 753 -6110 374 214 0 0 chr12 33094021 33094091 -110692364 + L1PBa LINE L1 1094 1163 -5700 9021 157 29 4 chr12 33094113 33096615 -110689840 + L1PBa LINE L1 1337 3901 -2961 1321 55 0 0 chr12 33096631 33096795 -110689660 - AluY SINE Alu -12 299 136 5815 106 4 0 chr12 33096795 33097579 -110688876 + HERVK3 LTR ERVK 6451 7237 -6 2473 167 9 23 chr12 33097584 33098022 -110688433 + LTR3 LTR ERVK 1 432 0 403 97 0 28 chr12 33098028 33098100 -110688355 + L1PB1 LINE L1 6079 6148 -3 390 284 88 31 chr12 33098269 33098530 -110687925 + L1MC4a LINE L1 5296 5571 -2237 376 241 9 35 chr12 33098562 33098678 -110687777 + L1MC4a LINE L1 5699 5811 -1997 1490 194 0 36 chr12 33098757 33099066 -110687389 - AluJo SINE Alu -14 298 1 311 315 47 24 chr12 33099066 33099193 -110687262 + L1MC4a LINE L1 5801 5930 -1878 2290 50 28 0 chr12 33099204 33099487 -110686968 - AluY SINE Alu -20 291 1 679 188 77 44 chr12 33099927 33100108 -110686347 + MER5A DNA MER1_type 1 187 -2 307 267 40 0 chr12 33100174 33100275 -110686180 - MER5A DNA MER1_type -83 106 2 201 274 104 28 chr12 33100519 33100625 -110685830 - MIR SINE MIR -57 151 38 396 0 0 0 chr12 33102102 33102146 -110684309 + (TC)n Simple_repeat Simple_repeat 2 45 0 342 0 0 0 chr12 33102145 33102183 -110684272 + (TG)n Simple_repeat Simple_repeat 1 38 0 * 287 363 49 0 chr12 33103163 33103265 -110683190 + MIR3 SINE MIR 85 191 -17 186 150 0 0 chr12 33105228 33105268 -110681187 + (A)n Simple_repeat Simple_repeat 1 40 0 240 248 37 55 chr12 33105270 33105379 -110681076 + L1ME4a LINE L1 5964 6070 -51 1590 188 0 13 chr12 33105519 33105823 -110680632 + AluJo SINE Alu 6 305 -7 1321 118 51 0 chr12 33108254 33108449 -110678006 - AluSq SINE Alu -108 205 1 962 147 0 0 chr12 33109268 33109425 -110677030 + AluJb SINE Alu 137 293 -19 223 290 80 20 chr12 33109853 33109953 -110676502 - L2 LINE L2 -220 3052 2947 1804 242 106 29 chr12 33111096 33111885 -110674570 - L1MDb LINE L1 -4799 1607 792 575 181 152 0 chr12 33112561 33112699 -110673756 - L1MDb LINE L1 -5958 438 280 425 254 77 81 chr12 33112879 33113127 -110673328 - HAL1 LINE L1 -1220 1287 1041 1517 165 30 3 chr12 33113386 33113683 -110672772 - AluJb SINE Alu -7 305 1 228 286 14 29 chr12 33114158 33114228 -110672227 - L2 LINE L2 -50 3222 3154 21 0 0 0 chr12 33114448 33114469 -110671986 + AT_rich Low_complexity Low_complexity 1 21 0 7496 162 21 23 chr12 33114473 33116786 -110669669 - L1PB1 LINE L1 -6 6145 3846 1593 178 3 11 chr12 33116786 33117073 -110669382 - AluSx SINE Alu -27 285 1 7496 162 21 23 chr12 33117073 33117215 -110669240 - L1PB1 LINE L1 -2305 3846 3705 298 294 23 40 chr12 33117298 33117405 -110669050 - L1MC/D LINE L1 -2006 5802 5698 1204 117 0 0 chr12 33117405 33117576 -110668879 - L1PA10 LINE L1 -1 6167 5997 298 294 23 40 chr12 33117576 33117645 -110668810 - L1MC/D LINE L1 -2110 5698 5629 1942 124 61 28 chr12 33117800 33118163 -110668292 - THE1C LTR MaLR 0 375 1 415 267 70 33 chr12 33118281 33118545 -110667910 - HAL1b LINE L1 -770 1657 1404 2305 129 0 8 chr12 33118545 33118909 -110667546 - L1PA13 LINE L1 -1 6162 5802 573 225 60 28 chr12 33118934 33119116 -110667339 - L1MC5 LINE L1 -63 7898 7711 301 309 21 32 chr12 33119318 33119412 -110667043 - MIR SINE MIR -95 113 21 562 293 141 0 chr12 33119640 33119889 -110666566 - L2 LINE L2 -18 3295 3012 2668 205 25 9 chr12 33119890 33120451 -110666004 - LTR24B LTR ERV1 -6 570 1 535 276 58 36 chr12 33120457 33120682 -110665773 - L2 LINE L2 -353 2961 2732 402 340 89 0 chr12 33121216 33121419 -110665036 + MIR SINE MIR 13 233 -29 612 339 106 9 chr12 33122049 33122711 -110663744 + L2 LINE L2 2557 3309 -4 817 213 0 0 chr12 33122795 33122945 -110663510 + FRAM SINE Alu 1 145 -31 181 50 25 50 chr12 33123070 33123110 -110663345 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 329 168 176 69 chr12 33123118 33123249 -110663206 + L1ME4a LINE L1 5966 6110 -11 528 197 27 132 chr12 33124136 33124370 -110662085 - MLT1C LTR MaLR -223 244 28 279 79 0 0 chr12 33124862 33124900 -110661555 + (TG)n Simple_repeat Simple_repeat 1 38 0 285 333 0 0 chr12 33125282 33125366 -110661089 + (CA)n Simple_repeat Simple_repeat 1 84 0 337 313 55 43 chr12 33125477 33125640 -110660815 + MIR SINE MIR 51 215 -47 234 264 0 0 chr12 33126534 33126587 -110659868 - MIR SINE MIR -6 256 204 366 200 13 0 chr12 33126844 33126919 -110659536 + MER4C LTR ERV1 390 465 0 2201 204 24 44 chr12 33127584 33128089 -110658366 + LTR42 LTR ERVL 1 495 0 1030 279 46 29 chr12 33128232 33128579 -110657876 + MLT1J LTR MaLR 81 433 -78 182 210 97 32 chr12 33128642 33128704 -110657751 + MIR SINE MIR 172 237 -25 2239 85 0 19 chr12 33128917 33129234 -110657221 + AluY SINE Alu 1 311 0 1216 235 71 0 chr12 33129520 33129647 -110656808 + AluJo SINE Alu 2 119 -183 212 0 0 35 chr12 33129647 33129676 -110656779 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1216 235 71 0 chr12 33129676 33129829 -110656626 + AluJo SINE Alu 119 302 0 262 329 36 21 chr12 33129942 33130082 -110656373 + MER87 LTR ERV1 400 541 0 393 254 78 111 chr12 33130209 33130453 -110656002 + MER87-int LTR ERV1 54 289 -1497 2067 71 4 7 chr12 33130458 33130739 -110655716 - AluY SINE Alu -3 308 29 345 303 70 43 chr12 33130960 33131260 -110655195 + MER87-int LTR ERV1 460 767 -6355 1405 309 71 62 chr12 33131545 33132660 -110653795 + MER87-int LTR ERV1 937 2061 -5061 1616 325 56 36 chr12 33132702 33133589 -110652866 + MER87-int LTR ERV1 2208 3063 -4059 1565 197 0 16 chr12 33133589 33133894 -110652561 - AluJo SINE Alu -12 300 1 1616 325 56 36 chr12 33133894 33134205 -110652250 + MER87-int LTR ERV1 3063 3366 -3756 1414 162 31 119 chr12 33134223 33134720 -110651735 + MER4A LTR ERV1 157 465 0 762 182 45 0 chr12 33134722 33134876 -110651579 - Tigger3b DNA MER2_type -149 1082 922 3591 172 74 83 chr12 33134885 33135819 -110650636 + MER21A LTR ERV1 1 925 -6 4632 143 82 8 chr12 33135826 33136376 -110650079 - Tigger3b DNA MER2_type -2101 927 288 1551 203 13 23 chr12 33136376 33136676 -110649779 + AluJo SINE Alu 1 297 -15 4632 143 82 8 chr12 33136676 33136988 -110649467 - Tigger3b DNA MER2_type -2740 288 1 4089 177 45 60 chr12 33137658 33137954 -110648501 - L1MB2 LINE L1 0 6171 5872 1833 173 48 12 chr12 33137954 33138319 -110648136 + MLT2D LTR ERVL 1 383 -31 306 0 0 0 chr12 33138319 33138353 -110648102 + (CA)n Simple_repeat Simple_repeat 2 35 0 1833 173 48 12 chr12 33138353 33138387 -110648068 + MLT2D LTR ERVL 383 414 0 4089 177 45 60 chr12 33138387 33138763 -110647692 - L1MB2 LINE L1 -299 5872 5492 1862 179 0 13 chr12 33138763 33139071 -110647384 - AluJo SINE Alu -7 305 2 243 0 0 0 chr12 33139071 33139098 -110647357 + (TG)n Simple_repeat Simple_repeat 2 28 0 4089 177 45 60 chr12 33139098 33139705 -110646750 - L1MB2 LINE L1 -677 5494 4929 802 254 27 27 chr12 33140141 33140361 -110646094 + MSTB1 LTR MaLR 1 220 -212 628 286 22 43 chr12 33140427 33140658 -110645797 - MIR SINE MIR 0 262 37 2186 42 0 30 chr12 33140659 33140921 -110645534 - AluY SINE Alu -7 304 51 308 363 46 23 chr12 33141394 33141656 -110644799 + L2 LINE L2 2554 2821 -493 5544 114 47 36 chr12 33141674 33143190 -110643265 + pTR5 LTR ERV1 741 2438 0 387 132 13 26 chr12 33143388 33143464 -110642991 - L1M LINE L1 -794 5389 5315 261 325 32 49 chr12 33143792 33143915 -110642540 - MIR3 SINE MIR -30 178 58 578 162 9 18 chr12 33145364 33145475 -110640980 - MLT1A2 LTR MaLR 0 374 265 457 243 65 9 chr12 33145946 33146101 -110640354 + MIR SINE MIR 30 191 -66 483 269 151 21 chr12 33146221 33146407 -110640048 - L2 LINE L2 0 3313 3104 188 224 13 66 chr12 33146505 33146581 -110639874 - L2 LINE L2 -311 3002 2931 446 227 173 32 chr12 33147057 33147242 -110639213 + MIR SINE MIR 47 257 -5 2604 40 10 0 chr12 33148096 33148392 -110638063 + AluY SINE Alu 1 299 -12 2488 74 0 0 chr12 33149220 33149517 -110636938 - AluY SINE Alu -14 297 1 348 210 38 140 chr12 33149650 33149807 -110636648 - HAL1 LINE L1 -379 2128 1988 913 234 59 53 chr12 33149854 33150191 -110636264 - MLT1A2 LTR MaLR 0 374 36 474 100 100 22 chr12 33150191 33150281 -110636174 - FLAM_A SINE Alu -16 126 30 293 320 0 0 chr12 33150563 33150638 -110635817 - HAL1 LINE L1 -1631 876 802 243 309 211 35 chr12 33150666 33151288 -110635167 - HAL1 LINE L1 -1767 740 10 1602 202 11 11 chr12 33151288 33151575 -110634880 - AluJo SINE Alu -25 287 1 23 0 0 0 chr12 33152738 33152761 -110633694 + AT_rich Low_complexity Low_complexity 1 23 0 303 314 81 72 chr12 33152798 33153034 -110633421 - MIR SINE MIR -23 239 2 1409 223 20 70 chr12 33153235 33153638 -110632817 - MLT1B LTR MaLR 0 390 8 620 180 0 0 chr12 33153694 33153805 -110632650 + FLAM_A SINE Alu 10 120 -22 239 358 18 8 chr12 33155864 33156025 -110630430 - MIR SINE MIR -69 139 21 217 274 16 0 chr12 33156257 33156319 -110630136 - L2 LINE L2 -24 3248 3186 282 309 170 42 chr12 33156589 33156942 -110629513 + L2 LINE L2 2873 3270 -2 457 355 81 15 chr12 33157794 33158126 -110628329 - L2 LINE L2 -5 3267 2914 198 273 0 0 chr12 33161579 33161623 -110624832 - MIR SINE MIR -66 142 99 439 261 92 8 chr12 33161776 33161906 -110624549 - MIR SINE MIR -75 187 47 191 281 56 34 chr12 33162860 33162949 -110623506 - MIR SINE MIR -114 148 58 2262 89 6 22 chr12 33163964 33164278 -110622177 + AluSx SINE Alu 1 309 -3 228 316 82 0 chr12 33167830 33167928 -110618527 + MIR SINE MIR 46 151 -111 2431 73 0 3 chr12 33167928 33168228 -110618227 + AluY SINE Alu 1 299 -12 637 266 174 23 chr12 33169237 33169607 -110616848 - L1MC4 LINE L1 -807 7001 6534 2184 109 30 0 chr12 33169607 33169909 -110616546 - AluSx SINE Alu -1 311 1 637 266 174 23 chr12 33169909 33170052 -110616403 - L1MC4 LINE L1 -1274 6534 6414 437 286 33 14 chr12 33170172 33170385 -110616070 - L1MC4a LINE L1 -1538 6270 6054 565 267 157 38 chr12 33170620 33170857 -110615598 - L1MC4a LINE L1 -692 5642 5429 240 295 0 13 chr12 33170857 33170935 -110615520 - MER5B DNA MER1_type -101 77 1 2349 96 0 16 chr12 33177576 33177879 -110608576 + AluY SINE Alu 1 298 -13 493 210 58 62 chr12 33178503 33178760 -110607695 + L1MC5 LINE L1 7452 7707 -254 1791 151 0 66 chr12 33178760 33179092 -110607363 + AluSx SINE Alu 1 312 0 271 217 0 33 chr12 33179107 33179167 -110607288 + AluJ/FLAM SINE Alu 3 60 -242 373 237 128 18 chr12 33179178 33179397 -110607058 - L1MC4a LINE L1 -1603 4543 4301 507 33 0 0 chr12 33179410 33179471 -110606984 + (TG)n Simple_repeat Simple_repeat 2 62 0 1510 239 25 23 chr12 33179481 33179920 -110606535 + L1M4 LINE L1 3784 4223 -1923 996 176 37 42 chr12 33179920 33180136 -110606319 - AluJo SINE Alu 0 312 98 950 251 21 4 chr12 33180967 33181210 -110605245 - MLT1C LTR MaLR 0 467 221 396 40 0 0 chr12 33181226 33181276 -110605179 + (TG)n Simple_repeat Simple_repeat 2 51 0 443 195 25 34 chr12 33181276 33181394 -110605061 - MLT1C LTR MaLR -298 169 53 326 347 66 16 chr12 33182341 33182462 -110603993 + L1MC4 LINE L1 6577 6703 -1339 300 346 37 22 chr12 33182875 33183011 -110603444 - MIR SINE MIR -73 189 52 2781 207 41 31 chr12 33183899 33184600 -110601855 + L1MA9 LINE L1 5575 6282 -30 1961 138 3 35 chr12 33185955 33186273 -110600182 + AluSx SINE Alu 5 312 0 1279 115 60 0 chr12 33187050 33187250 -110599205 + L1MA2 LINE L1 6093 6304 0 889 115 14 20 chr12 33187947 33188095 -110598360 + HERVE LTR ERV1 3249 3395 -4418 929 121 7 20 chr12 33189424 33189573 -110596882 + HERVE LTR ERV1 3249 3395 -4418 301 286 116 98 chr12 33189687 33190023 -110596432 - L1MDa LINE L1 -5797 743 402 308 249 85 140 chr12 33190039 33190381 -110596074 + L1M4b LINE L1 415 737 -6122 907 86 71 21 chr12 33191069 33191209 -110595246 + HERVE LTR ERV1 3249 3395 -4418 4196 96 2 10 chr12 33191666 33192269 -110594186 + HERVE LTR ERV1 3249 3846 -3967 1474 249 90 57 chr12 33192280 33193242 -110593213 - SATR1 Satellite Satellite -24 993 1 4230 97 2 10 chr12 33193558 33194157 -110592298 + HERVE LTR ERV1 3253 3846 -3967 1502 220 89 47 chr12 33194168 33194823 -110591632 - SATR1 Satellite Satellite 0 682 1 28 48 0 0 chr12 33195099 33195141 -110591314 + AT_rich Low_complexity Low_complexity 1 42 0 216 293 0 0 chr12 33195687 33195745 -110590710 + L2 LINE L2 3255 3312 -1 1712 157 96 56 chr12 33196199 33196574 -110589881 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr12 33197127 33197148 -110589307 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 33197206 33197234 -110589221 + AT_rich Low_complexity Low_complexity 1 28 0 2243 117 0 0 chr12 33197259 33197549 -110588906 - AluSx SINE Alu -22 290 1 239 324 108 7 chr12 33198727 33198866 -110587589 - MER5A DNA MER1_type -2 187 35 26 0 0 0 chr12 33201005 33201031 -110585424 + AT_rich Low_complexity Low_complexity 1 26 0 208 146 0 24 chr12 33201582 33201623 -110584832 + (CAA)n Simple_repeat Simple_repeat 3 42 0 225 0 0 0 chr12 33205133 33205158 -110581297 + (TTG)n Simple_repeat Simple_repeat 3 27 0 4034 134 34 0 chr12 33207424 33208041 -110578414 + Tigger3b DNA MER2_type 1 638 -593 2144 164 8 11 chr12 33208042 33208401 -110578054 + Tigger3b DNA MER2_type 874 1231 0 307 244 32 32 chr12 33208988 33209111 -110577344 - MIR SINE MIR -1 261 139 234 0 0 0 chr12 33209119 33209145 -110577310 + (CA)n Simple_repeat Simple_repeat 2 27 0 540 329 79 57 chr12 33211042 33211602 -110574853 + HAL1b LINE L1 21 592 -756 760 197 0 0 chr12 33211644 33211771 -110574684 - AluJb SINE Alu -11 301 175 2454 58 0 3 chr12 33211988 33212281 -110574174 - AluY SINE Alu -19 292 1 23 33 0 0 chr12 33212335 33212365 -110574090 + AT_rich Low_complexity Low_complexity 1 30 0 249 301 62 49 chr12 33213114 33213519 -110572936 + L1M4 LINE L1 2853 3262 -2884 718 115 8 41 chr12 33213520 33213642 -110572813 - MER4C LTR ERV1 -347 118 1 484 179 65 92 chr12 33213650 33213704 -110572751 + L1MC4 LINE L1 7864 7918 -124 345 47 0 0 chr12 33213704 33213747 -110572708 + (TG)n Simple_repeat Simple_repeat 2 44 0 484 179 65 92 chr12 33213747 33213876 -110572579 + L1MC4 LINE L1 7918 8042 0 210 143 0 0 chr12 33214222 33214257 -110572198 + (CA)n Simple_repeat Simple_repeat 2 36 0 1517 199 3 14 chr12 33214263 33214560 -110571895 - AluSx SINE Alu -18 294 1 254 228 177 44 chr12 33214780 33214938 -110571517 + L1ME4a LINE L1 5882 6060 -61 2242 32 0 0 chr12 33216319 33216568 -110569887 - L1PA3 LINE L1 -1 6154 5906 306 215 0 0 chr12 33216718 33216797 -110569658 + (TA)n Simple_repeat Simple_repeat 2 80 0 491 261 139 28 chr12 33217210 33217390 -110569065 + MIR SINE MIR 31 230 -32 248 251 60 102 chr12 33217398 33217565 -110568890 - MIR SINE MIR -90 172 13 2595 138 162 22 chr12 33217583 33218046 -110568409 + MER1A DNA MER1_type 1 528 -1 21 71 0 0 chr12 33219200 33219242 -110567213 + AT_rich Low_complexity Low_complexity 1 42 0 2325 84 3 26 chr12 33220197 33220507 -110565948 - AluSx SINE Alu -9 303 1 213 191 0 0 chr12 33220513 33220555 -110565900 - L2 LINE L2 -1 3312 3271 4109 106 9 110 chr12 33221131 33221584 -110564871 + MER4A LTR ERV1 1 353 -311 2179 133 0 0 chr12 33221584 33221892 -110564563 - AluSx SINE Alu -4 308 1 4109 106 9 110 chr12 33221892 33222176 -110564279 + MER4A LTR ERV1 353 664 0 21 71 0 0 chr12 33222329 33222371 -110564084 + AT_rich Low_complexity Low_complexity 1 42 0 548 258 96 24 chr12 33222406 33222573 -110563882 - MIR SINE MIR -61 201 23 236 287 67 85 chr12 33223374 33223705 -110562750 + L1MC/D LINE L1 5321 5645 -2163 1644 168 41 0 chr12 33223755 33224046 -110562409 - AluJo SINE Alu -9 303 1 22 0 0 0 chr12 33225279 33225301 -110561154 + AT_rich Low_complexity Low_complexity 1 22 0 232 274 137 21 chr12 33225742 33225837 -110560618 - MIR SINE MIR -96 112 7 517 354 6 11 chr12 33227112 33227293 -110559162 + MIR SINE MIR 5 184 -78 1961 117 3 14 chr12 33227333 33227654 -110558801 - AluSq SINE Alu 0 318 1 24 32 0 0 chr12 33227695 33227726 -110558729 + AT_rich Low_complexity Low_complexity 1 31 0 276 288 78 53 chr12 33227893 33228174 -110558281 + L1ME LINE L1 5523 5810 -311 2278 111 0 0 chr12 33228821 33229127 -110557328 - AluSg SINE Alu -4 306 1 877 179 23 80 chr12 33229834 33229883 -110556572 - L1MA6 LINE L1 0 6300 6250 2076 140 0 7 chr12 33229883 33230183 -110556272 + AluSx SINE Alu 1 298 -14 877 179 23 80 chr12 33230183 33230211 -110556244 - L1MA6 LINE L1 -50 6250 6222 228 35 0 0 chr12 33230211 33230240 -110556215 + (CA)n Simple_repeat Simple_repeat 2 30 0 877 179 23 80 chr12 33230240 33230424 -110556031 - L1MA6 LINE L1 -78 6222 6053 469 296 37 26 chr12 33232357 33232546 -110553909 + LTR67 LTR ERVL 29 219 -338 351 174 116 174 chr12 33233215 33233387 -110553068 + MER105 DNA DNA 2 163 -41 26827 32 3 1 chr12 33233611 33239631 -110546824 + L1PA3 LINE L1 2 6155 0 21 0 0 0 chr12 33239631 33239652 -110546803 + AT_rich Low_complexity Low_complexity 1 21 0 694 323 39 0 chr12 33239737 33239966 -110546489 + MIR SINE MIR 23 260 -2 2204 160 71 13 chr12 33239997 33240333 -110546122 + MSTA LTR MaLR 1 365 -63 2240 121 0 3 chr12 33240333 33240640 -110545815 - AluSq SINE Alu -7 306 1 2204 160 71 13 chr12 33240640 33240696 -110545759 + MSTA LTR MaLR 365 416 -12 244 308 48 29 chr12 33240721 33240825 -110545630 + L2 LINE L2 3171 3276 -37 64 106 0 0 chr12 33241541 33241787 -110544668 + AT_rich Low_complexity Low_complexity 1 246 0 281 307 34 45 chr12 33242471 33242650 -110543805 + MIR SINE MIR 86 262 0 218 203 31 47 chr12 33245049 33245113 -110541342 - MIR SINE MIR -126 136 74 355 361 22 46 chr12 33245402 33245770 -110540685 - L2 LINE L2 -341 2973 2615 302 306 32 81 chr12 33245775 33246023 -110540432 + HAL1 LINE L1 151 386 -2121 2233 53 0 11 chr12 33246023 33246306 -110540149 + AluY SINE Alu 22 301 -10 205 200 0 0 chr12 33246962 33247002 -110539453 + (TA)n Simple_repeat Simple_repeat 2 41 0 2426 73 0 10 chr12 33247073 33247387 -110539068 - AluY SINE Alu 0 311 1 325 258 0 0 chr12 33247400 33247466 -110538989 - MER5A DNA MER1_type -123 66 1 222 328 0 0 chr12 33247609 33247667 -110538788 + L2 LINE L2 3215 3272 0 242 271 188 33 chr12 33247770 33247951 -110538504 - MIR SINE MIR -6 256 48 5640 21 0 0 chr12 33250780 33251391 -110535064 - SVA Other Other -1 1385 775 232 209 30 45 chr12 33251608 33251675 -110534780 - MER92C LTR ERV1 -209 345 280 190 314 186 0 chr12 33251707 33251793 -110534662 + MIR SINE MIR 161 262 0 189 0 0 0 chr12 33251882 33251903 -110534552 + (TAAAAA)n Simple_repeat Simple_repeat 1 21 0 253 138 52 0 chr12 33251931 33251989 -110534466 + L1MB2 LINE L1 6111 6171 0 346 244 71 54 chr12 33252037 33252205 -110534250 + L1M4 LINE L1 3029 3199 -2947 22 56 0 0 chr12 33252752 33252788 -110533667 + AT_rich Low_complexity Low_complexity 1 36 0 209 146 167 0 chr12 33253001 33253049 -110533406 + MER5A DNA MER1_type 134 189 0 213 311 0 0 chr12 33253104 33253149 -110533306 + L2 LINE L2 3013 3057 -256 466 244 26 0 chr12 33253207 33253322 -110533133 - MER58 DNA MER1_type -97 118 1 223 245 53 43 chr12 33253356 33253450 -110533005 + L2 LINE L2 3125 3219 -94 420 225 23 31 chr12 33253496 33253625 -110532830 + MER94 DNA DNA 7 134 0 206 225 0 0 chr12 33253682 33253722 -110532733 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 311 283 162 6 chr12 33254218 33254391 -110532064 - L1ME4a LINE L1 -20 6101 5902 1964 156 3 10 chr12 33254554 33254994 -110531461 - AluJb SINE Alu 0 438 1 2104 91 14 10 chr12 33255322 33255618 -110530837 + AluSq SINE Alu 1 297 -16 281 68 23 0 chr12 33255618 33255662 -110530793 + (GGGA)n Simple_repeat Simple_repeat 1 45 0 24 0 0 0 chr12 33256421 33256445 -110530010 + AT_rich Low_complexity Low_complexity 1 24 0 295 319 14 0 chr12 33256648 33256717 -110529738 + MIR SINE MIR 10 79 -183 232 253 0 60 chr12 33256760 33256843 -110529612 + MIR SINE MIR 183 260 -2 1152 88 6 6 chr12 33257250 33257410 -110529045 - L1PA15 LINE L1 -9 6156 5997 234 344 48 8 chr12 33257560 33257685 -110528770 + L2 LINE L2 3180 3309 -4 2017 111 11 0 chr12 33257766 33258045 -110528410 + AluSx SINE Alu 5 286 -26 653 228 70 35 chr12 33258091 33258262 -110528193 + MIR SINE MIR 86 262 0 217 238 0 0 chr12 33258384 33258426 -110528029 + (TG)n Simple_repeat Simple_repeat 1 42 0 22 0 0 0 chr12 33259419 33259441 -110527014 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chr12 33259664 33259707 -110526748 + AT_rich Low_complexity Low_complexity 1 43 0 6975 58 1 0 chr12 33259776 33261198 -110525257 - L1PA7 LINE L1 -4 6150 4726 * 7465 60 19 0 chr12 33261195 33262906 -110523549 + L1PA5 LINE L1 4416 6141 -13 307 305 86 33 chr12 33262969 33263179 -110523276 - L1MEd LINE L1 -5066 1053 833 741 158 175 34 chr12 33264117 33264294 -110522161 + MER3 DNA MER1_type 7 208 -1 224 192 64 0 chr12 33264648 33264726 -110521729 + (TA)n Simple_repeat Simple_repeat 1 83 0 258 308 154 45 chr12 33264804 33264960 -110521495 + MIR SINE MIR 13 185 -77 23 0 0 0 chr12 33265263 33265286 -110521169 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr12 33266081 33266110 -110520345 + AT_rich Low_complexity Low_complexity 1 29 0 180 111 0 0 chr12 33269859 33269886 -110516569 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 3109 75 2 0 chr12 33269903 33270319 -110516136 - L1PA5 LINE L1 0 6154 5738 238 306 0 35 chr12 33270720 33270826 -110515629 + MER5A DNA MER1_type 26 139 -50 21 36 0 0 chr12 33271447 33271475 -110514980 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr12 33272310 33272331 -110514124 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2184 99 0 23 chr12 33272333 33272635 -110513820 - AluSx SINE Alu -17 295 1 235 150 0 50 chr12 33276323 33276383 -110510072 + (TAAAAA)n Simple_repeat Simple_repeat 2 58 0 4614 142 61 61 chr12 33277096 33277411 -110509044 + MER4D LTR ERV1 1 315 -588 612 206 8 0 chr12 33277411 33277542 -110508913 - L1PA11 LINE L1 -5 6169 6038 4614 142 61 61 chr12 33277542 33278129 -110508326 + MER4D LTR ERV1 314 903 0 790 319 19 6 chr12 33278220 33278459 -110507996 + MIR SINE MIR 1 241 -21 251 289 119 13 chr12 33278710 33278869 -110507586 - MLT1L LTR MaLR -24 591 416 239 261 0 11 chr12 33278964 33279056 -110507399 + CT-rich Low_complexity Low_complexity 6 96 0 1193 308 23 21 chr12 33279161 33279589 -110506866 + LTR16A LTR ERVL 17 445 -5 315 282 159 49 chr12 33279964 33280127 -110506328 - MER5A DNA MER1_type 0 189 9 195 256 13 90 chr12 33280174 33280252 -110506203 + MER5B DNA MER1_type 37 108 -70 * 289 308 0 0 chr12 33280229 33280294 -110506161 + MER5A DNA MER1_type 10 74 -115 434 37 0 0 chr12 33280294 33280348 -110506107 - L1PA5 LINE L1 -356 5799 5746 2966 34 0 0 chr12 33280348 33280699 -110505756 + L1PA5 LINE L1 5789 6142 -12 469 241 116 0 chr12 33280704 33280816 -110505639 + MER5A DNA MER1_type 65 189 0 3009 277 34 62 chr12 33281047 33282463 -110503992 + L2 LINE L2 1923 3289 -24 227 286 0 22 chr12 33283187 33283278 -110503177 + L1MC4 LINE L1 6615 6703 -1339 278 275 0 9 chr12 33283305 33283414 -110503041 + (TA)n Simple_repeat Simple_repeat 1 108 0 227 169 211 0 chr12 33283424 33283495 -110502960 + L1MC4 LINE L1 6617 6702 -1340 2496 50 0 10 chr12 33283905 33284206 -110502249 + AluY SINE Alu 1 298 -13 1602 185 7 0 chr12 33284656 33284926 -110501529 + AluJb SINE Alu 3 274 -38 825 87 0 0 chr12 33284926 33285041 -110501414 + (TTTC)n Simple_repeat Simple_repeat 4 118 0 252 0 0 0 chr12 33285042 33285070 -110501385 + (TA)n Simple_repeat Simple_repeat 1 28 0 243 0 0 0 chr12 33285069 33285096 -110501359 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 1726 225 65 85 chr12 33285231 33285796 -110500659 - MLT2B3 LTR ERVL 0 554 1 9868 171 11 23 chr12 33285796 33287792 -110498663 + L1PA13 LINE L1 348 2278 -4509 239 294 109 0 chr12 33287999 33288091 -110498364 + MIR SINE MIR 46 147 -115 299 100 0 0 chr12 33288773 33288813 -110497642 + L1PB1 LINE L1 6013 6052 -99 370 330 17 0 chr12 33288893 33289008 -110497447 + GA-rich Low_complexity Low_complexity 4 120 0 414 304 65 34 chr12 33290579 33290872 -110495583 + MLT1K LTR MaLR 158 459 -129 887 277 29 0 chr12 33291666 33291904 -110494551 - MIR SINE MIR -3 259 15 315 248 236 0 chr12 33292457 33292614 -110493841 + L2 LINE L2 2863 3056 -257 712 256 150 0 chr12 33292679 33292886 -110493569 + MIR SINE MIR 25 262 0 393 352 41 0 chr12 33292930 33293075 -110493380 + L2 LINE L2 3121 3271 -1 209 336 201 0 chr12 33294799 33294933 -110491522 + MIR SINE MIR 102 262 0 403 299 135 11 chr12 33298452 33298673 -110487782 + MIR SINE MIR 19 261 -1 2234 92 40 10 chr12 33298830 33299155 -110487300 - AluSp SINE Alu 0 313 1 296 340 57 14 chr12 33299461 33299602 -110486853 + MIR3 SINE MIR 1 147 -61 1760 157 39 20 chr12 33300647 33300953 -110485502 + AluJo SINE Alu 1 312 0 311 304 43 68 chr12 33301013 33301116 -110485339 - L1ME4a LINE L1 -244 5877 5773 2060 157 3 0 chr12 33301116 33301421 -110485034 + AluSg SINE Alu 1 306 -4 311 304 43 68 chr12 33301421 33301669 -110484786 - L1ME4a LINE L1 -348 5773 5535 1014 181 6 0 chr12 33301733 33301904 -110484551 + FRAM SINE Alu 5 176 0 271 290 0 0 chr12 33301914 33302007 -110484448 - L1P5 LINE L1 -705 5451 5359 395 309 41 52 chr12 33302155 33302349 -110484106 + MIR SINE MIR 1 192 -70 1388 172 27 23 chr12 33303183 33303445 -110483010 + AluSx SINE Alu 49 311 -1 213 226 38 0 chr12 33303848 33303901 -110482554 + MIR SINE MIR 21 75 -133 357 285 106 26 chr12 33305276 33305429 -110481026 + MIR SINE MIR 4 170 -62 213 217 0 22 chr12 33305502 33305548 -110480907 + GA-rich Low_complexity Low_complexity 3 47 0 588 261 118 10 chr12 33307055 33307258 -110479197 + MIR SINE MIR 36 260 -2 456 319 75 31 chr12 33307196 33307422 -110479033 - MIR SINE MIR -11 251 16 * 495 283 120 5 chr12 33307978 33308169 -110478286 - MIR SINE MIR -49 213 1 236 213 0 0 chr12 33308181 33308228 -110478227 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 2009 103 68 4 chr12 33308988 33309269 -110477186 + AluSq SINE Alu 1 299 -14 257 294 24 12 chr12 33309340 33309425 -110477030 + LTR39 LTR ERV1 698 783 0 1558 165 24 0 chr12 33310294 33310542 -110475913 - AluJo SINE Alu -22 290 37 2479 70 3 0 chr12 33310627 33310929 -110475526 + AluSp SINE Alu 2 304 -9 355 303 8 8 chr12 33311604 33311736 -110474719 + MER70-int LTR ERVL 4535 4666 -357 281 280 18 110 chr12 33311835 33312117 -110474338 + LTR39-int LTR ERV1 7809 8064 -56 258 132 0 0 chr12 33312085 33312123 -110474332 + LTR39-int LTR ERV1 8312 8349 -50 * 3866 139 81 21 chr12 33312168 33312895 -110473560 + LTR39 LTR ERV1 1 771 -12 729 292 74 108 chr12 33312917 33313085 -110473370 - L2 LINE L2 -528 2786 2614 1914 171 0 3 chr12 33313085 33313377 -110473078 + AluJo SINE Alu 1 291 -21 729 292 74 108 chr12 33313377 33313886 -110472569 - L2 LINE L2 -700 2614 2132 1835 182 0 16 chr12 33314085 33314392 -110472063 + AluJo SINE Alu 1 302 -10 2207 105 0 0 chr12 33314400 33314686 -110471769 - AluSx SINE Alu -26 286 1 26 50 0 0 chr12 33314756 33314796 -110471659 + AT_rich Low_complexity Low_complexity 1 40 0 414 187 18 134 chr12 33315701 33315773 -110470682 - MER105 DNA DNA -20 184 142 2319 124 0 0 chr12 33315773 33316079 -110470376 + AluSx SINE Alu 1 306 -6 414 187 18 134 chr12 33316079 33316177 -110470278 - MER105 DNA DNA -62 142 34 2004 285 49 38 chr12 33316430 33317223 -110469232 - HERV16 LTR ERVL -3571 1425 624 2321 107 3 0 chr12 33318297 33318597 -110467858 + AluSg SINE Alu 1 301 -9 890 306 77 50 chr12 33319772 33320475 -110465980 - HERV16 LTR ERVL -4274 722 1 853 307 76 22 chr12 33320475 33320885 -110465570 - LTR16A LTR ERVL 0 450 19 2056 121 36 19 chr12 33321004 33321162 -110465293 - Tigger2 DNA MER2_type -75 2643 2489 2354 95 23 0 chr12 33321162 33321466 -110464989 + AluSx SINE Alu 2 312 0 2056 121 36 19 chr12 33321466 33321672 -110464783 - Tigger2 DNA MER2_type -229 2489 2273 1294 173 14 0 chr12 33321681 33321895 -110464560 + AluJb SINE Alu 86 302 -10 378 146 0 0 chr12 33321896 33321951 -110464504 - Tigger2 DNA MER2_type -2663 55 1 231 39 20 59 chr12 33322445 33322496 -110463959 + (TTTTTA)n Simple_repeat Simple_repeat 2 50 0 27 49 0 0 chr12 33323378 33323419 -110463036 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr12 33325273 33325299 -110461156 + AT_rich Low_complexity Low_complexity 1 26 0 1257 204 5 5 chr12 33325370 33325591 -110460864 + AluJb SINE Alu 36 256 -56 454 276 109 68 chr12 33325609 33325882 -110460573 + L1ME4a LINE L1 2938 3198 -2948 378 0 0 0 chr12 33325882 33325924 -110460531 + (CA)n Simple_repeat Simple_repeat 2 43 0 454 276 109 68 chr12 33325924 33326214 -110460241 + L1ME4a LINE L1 3198 3580 -2566 549 68 0 0 chr12 33326522 33326596 -110459859 + (TTCC)n Simple_repeat Simple_repeat 2 75 0 1171 84 11 6 chr12 33326607 33326785 -110459670 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1292 138 15 15 chr12 33326794 33326989 -110459466 - AluJb SINE Alu -32 280 86 700 314 115 33 chr12 33327004 33327252 -110459203 + L1ME4a LINE L1 4710 4936 -1185 1025 207 6 0 chr12 33327252 33327426 -110459029 + FAM SINE Alu 1 175 0 700 314 115 33 chr12 33327426 33327919 -110458536 + L1ME4a LINE L1 4936 5536 -585 1567 149 126 0 chr12 33327919 33328180 -110458275 - AluJo SINE Alu -2 310 17 700 314 115 33 chr12 33328180 33328280 -110458175 + L1ME4a LINE L1 5536 5626 -495 1324 225 149 34 chr12 33328288 33328725 -110457730 - MLT1F1 LTR MaLR 0 567 71 449 276 53 0 chr12 33328821 33328973 -110457482 + L1ME4a LINE L1 5636 5795 -326 333 303 45 0 chr12 33329028 33329206 -110457249 + L1ME4a LINE L1 5934 6119 -2 1884 173 3 3 chr12 33329416 33329717 -110456738 + AluSx SINE Alu 1 301 -11 2094 98 33 0 chr12 33330458 33330760 -110455695 - AluSq SINE Alu 0 311 1 439 240 6 22 chr12 33331182 33331322 -110455133 + MLT1H LTR MaLR 1 159 -265 869 164 60 22 chr12 33331476 33331659 -110454796 - AluJo SINE Alu 0 312 123 364 197 14 0 chr12 33331870 33331941 -110454514 + L2 LINE L2 3242 3313 0 828 200 47 6 chr12 33332005 33332175 -110454280 + MLT2C1 LTR ERVL 1 177 -220 1780 194 0 0 chr12 33332223 33332511 -110453944 + AluJo SINE Alu 1 288 -24 397 262 95 55 chr12 33332523 33332870 -110453585 + L1MEc LINE L1 1949 2309 -4087 953 189 52 48 chr12 33332883 33333093 -110453362 + Charlie1a DNA MER1_type 76 289 -2472 2199 127 0 0 chr12 33333093 33333392 -110453063 + AluSx SINE Alu 1 299 -13 953 189 52 48 chr12 33333392 33333451 -110453004 + Charlie1a DNA MER1_type 289 346 -1109 2169 105 41 0 chr12 33333820 33334115 -110452340 + AluSp SINE Alu 1 307 -6 315 123 0 18 chr12 33334515 33334578 -110451877 + Alu SINE Alu 2 55 -253 1148 140 67 0 chr12 33334582 33334761 -110451694 + AluSg/x SINE Alu 108 298 -14 2105 120 0 23 chr12 33335409 33335709 -110450746 + AluJb SINE Alu 1 293 -19 21 36 0 0 chr12 33335929 33335957 -110450498 + AT_rich Low_complexity Low_complexity 1 28 0 226 325 36 0 chr12 33336100 33336183 -110450272 - MIR SINE MIR -10 252 167 726 299 79 30 chr12 33336185 33336653 -110449802 - LTR16B LTR ERVL 0 464 10 399 227 31 10 chr12 33336656 33336753 -110449702 - MIR SINE MIR -90 172 74 2520 88 0 0 chr12 33336803 33337110 -110449345 - AluSq SINE Alu -6 307 1 399 283 178 31 chr12 33337208 33337399 -110449056 - L1ME4a LINE L1 -233 5888 5670 3960 153 32 68 chr12 33337405 33338242 -110448213 - L1MB7 LINE L1 -21 6163 5297 187 43 0 0 chr12 33338242 33338265 -110448190 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 2160 107 7 0 chr12 33338265 33338545 -110447910 - AluSx SINE Alu -30 282 1 1921 142 7 20 chr12 33338545 33338847 -110447608 - AluSx SINE Alu -14 298 1 3960 153 32 68 chr12 33338847 33339008 -110447447 - L1MB7 LINE L1 -885 5299 5134 747 150 0 95 chr12 33339008 33339155 -110447300 - FLAM_C SINE Alu 0 133 1 3960 153 32 68 chr12 33339155 33339381 -110447074 - L1MB7 LINE L1 -1050 5134 4967 1895 151 0 33 chr12 33339455 33339760 -110446695 - AluJo SINE Alu -17 295 1 556 127 0 0 chr12 33340532 33340603 -110445852 + AluS SINE Alu 2 72 -240 2018 120 35 0 chr12 33341455 33341738 -110444717 + AluSx SINE Alu 1 293 -19 263 234 0 16 chr12 33341943 33342007 -110444448 - Charlie7 DNA MER1_type -2511 101 39 2084 88 51 0 chr12 33342802 33343076 -110443379 + AluSg SINE Alu 3 290 -20 711 195 0 0 chr12 33343235 33343353 -110443102 + FLAM_C SINE Alu 1 118 -15 180 0 0 0 chr12 33343358 33343378 -110443077 + (GAA)n Simple_repeat Simple_repeat 2 21 0 4934 28 0 0 chr12 33343713 33344284 -110442171 - L1P LINE L1 -1727 4419 3849 5200 40 0 0 chr12 33344284 33344866 -110441589 + L1PA4 LINE L1 5571 6152 -3 1633 122 78 11 chr12 33344889 33345159 -110441296 + L1PA16 LINE L1 5861 6148 -18 387 293 135 23 chr12 33345521 33345736 -110440719 - MIR SINE MIR -15 247 9 676 266 52 22 chr12 33345990 33346219 -110440236 + L1MC4a LINE L1 7190 7425 -383 1183 184 18 0 chr12 33346223 33346440 -110440015 + AluJo SINE Alu 87 307 -5 1036 242 144 35 chr12 33346446 33346926 -110439529 + L1MC4 LINE L1 7507 8038 -4 231 263 97 61 chr12 33347178 33347292 -110439163 - L2 LINE L2 -223 3049 2932 590 274 51 24 chr12 33347337 33347592 -110438863 + LTR33 LTR ERVL 258 519 -2 297 228 96 96 chr12 33347652 33347819 -110438636 - L2 LINE L2 -1211 2103 1937 2246 118 0 3 chr12 33347936 33348249 -110438206 + AluSx SINE Alu 1 312 0 2428 89 3 0 chr12 33348406 33348708 -110437747 + AluSq SINE Alu 1 303 -10 2007 139 3 13 chr12 33349642 33349945 -110436510 - AluSx SINE Alu -12 300 1 298 232 11 74 chr12 33350059 33350154 -110436301 + MLT1E LTR MaLR 8 96 -497 738 214 168 85 chr12 33350229 33350521 -110435934 + MLT1E LTR MaLR 283 594 -1 1725 77 23 0 chr12 33352947 33353167 -110433288 + AluSq SINE Alu 69 293 -20 28 0 0 0 chr12 33353757 33353785 -110432670 + AT_rich Low_complexity Low_complexity 1 28 0 2281 114 0 0 chr12 33353855 33354153 -110432302 + AluSx SINE Alu 1 298 -14 333 0 0 0 chr12 33354390 33354427 -110432028 + (CA)n Simple_repeat Simple_repeat 2 38 0 1506 260 110 68 chr12 33354611 33355640 -110430815 - L1ME LINE L1 -534 5630 4645 2151 113 0 0 chr12 33355640 33355922 -110430533 + AluSx SINE Alu 1 282 -30 1506 260 110 68 chr12 33355922 33355949 -110430506 - L1ME LINE L1 -1519 4645 4621 348 24 0 0 chr12 33355949 33355990 -110430465 + (CA)n Simple_repeat Simple_repeat 2 42 0 1506 260 110 68 chr12 33355990 33356228 -110430227 - L1ME LINE L1 -1543 4621 4394 2047 151 3 0 chr12 33356228 33356526 -110429929 + AluSx SINE Alu 1 299 -13 1506 260 110 68 chr12 33356526 33356914 -110429541 - L1ME LINE L1 -1770 4394 3865 2268 92 7 7 chr12 33356914 33357219 -110429236 + AluSq SINE Alu 1 305 -8 1506 260 110 68 chr12 33357219 33357320 -110429135 - L1ME LINE L1 -2299 3865 3770 700 285 7 0 chr12 33357443 33357615 -110428840 - FRAM SINE Alu 0 173 1 381 303 58 33 chr12 33357644 33357918 -110428537 - L1ME LINE L1 -2693 3453 3173 26 0 0 0 chr12 33357975 33358001 -110428454 + AT_rich Low_complexity Low_complexity 1 26 0 3650 187 81 52 chr12 33358501 33359980 -110426475 + L1MDa LINE L1 33 1783 -4757 1773 136 3 45 chr12 33360337 33360645 -110425810 - AluJo SINE Alu 0 312 18 1457 147 127 12 chr12 33360667 33360952 -110425503 - AluSg SINE Alu 0 310 1 2286 113 3 0 chr12 33361243 33361553 -110424902 - AluSp SINE Alu -2 311 1 302 269 92 31 chr12 33361849 33361979 -110424476 - MIR SINE MIR -105 157 20 2263 91 0 31 chr12 33362016 33362334 -110424121 + AluSx SINE Alu 1 308 -4 1911 167 10 3 chr12 33362753 33363059 -110423396 + AluSx SINE Alu 1 308 -4 246 259 62 12 chr12 33363183 33363264 -110423191 + MIR SINE MIR 65 149 -113 707 224 52 84 chr12 33363466 33363774 -110422681 + MER46C DNA MER2_type 2 299 -39 24 0 0 0 chr12 33364482 33364506 -110421949 + AT_rich Low_complexity Low_complexity 1 24 0 259 319 0 0 chr12 33364855 33364946 -110421509 - MIR SINE MIR -102 160 70 333 304 223 0 chr12 33365253 33365401 -110421054 - MIR SINE MIR -42 220 40 2165 125 0 7 chr12 33366122 33366419 -110420036 + AluSq SINE Alu 1 295 -18 811 149 0 0 chr12 33366438 33366552 -110419903 + FLAM_C SINE Alu 6 119 -24 37 39 0 0 chr12 33366552 33366603 -110419852 + AT_rich Low_complexity Low_complexity 1 51 0 2049 125 0 0 chr12 33366721 33367000 -110419455 - AluJb SINE Alu -33 279 1 1497 172 56 8 chr12 33367121 33367414 -110419041 + AluJb SINE Alu 1 306 0 1139 189 0 0 chr12 33367423 33367598 -110418857 + FAM SINE Alu 1 175 0 24 0 0 0 chr12 33367735 33367759 -110418696 + AT_rich Low_complexity Low_complexity 1 24 0 1321 161 5 22 chr12 33367771 33367994 -110418461 - AluJb SINE Alu -93 219 1 2419 85 0 7 chr12 33368002 33368307 -110418148 - AluSc SINE Alu -6 303 1 2391 78 0 0 chr12 33369855 33370150 -110416305 - AluY SINE Alu -16 295 1 1949 165 64 3 chr12 33370268 33370596 -110415859 - MER7A DNA MER2_type 0 346 1 593 134 35 0 chr12 33372782 33372924 -110413531 + L1MB7 LINE L1 6055 6177 -7 507 325 46 52 chr12 33373027 33373372 -110413083 - LTR59 LTR ERV1 -12 585 243 699 221 24 0 chr12 33374017 33374144 -110412311 - FLAM_C SINE Alu -12 131 2 471 202 43 0 chr12 33374251 33374345 -110412110 + U13 snRNA snRNA 1 98 -6 370 267 19 19 chr12 33374427 33374532 -110411923 - HERV9 LTR ERV1 -500 4454 4350 924 129 0 7 chr12 33374533 33374672 -110411783 + AluJb SINE Alu 163 300 -12 383 242 39 84 chr12 33375642 33375820 -110410635 - HERV9 LTR ERV1 -1779 2868 2699 2398 89 3 0 chr12 33376231 33376533 -110409922 - AluSx SINE Alu -9 303 1 250 209 45 15 chr12 33377517 33377584 -110408871 - HERV9 LTR ERV1 -3158 4598 4530 286 146 0 0 chr12 33377640 33377681 -110408774 + AluJb SINE Alu 1 41 -267 299 311 33 11 chr12 33377700 33377790 -110408665 - HERV9 LTR ERV1 -4161 2640 2549 1600 142 4 0 chr12 33377855 33378094 -110408361 + AluJb SINE Alu 48 287 -25 1716 145 41 4 chr12 33378505 33378774 -110407681 - AluSx SINE Alu -33 279 1 497 294 33 13 chr12 33379213 33379366 -110407089 - HERV9 LTR ERV1 -4147 500 345 2308 123 0 0 chr12 33379380 33379688 -110406767 + AluSx SINE Alu 1 308 -4 279 227 49 98 chr12 33379696 33379859 -110406596 - HERV9 LTR ERV1 -4949 3450 3296 2302 86 7 7 chr12 33380199 33380501 -110405954 - AluSp SINE Alu -11 302 1 1915 107 15 0 chr12 33381405 33381667 -110404788 - AluSg SINE Alu -10 300 35 343 255 0 2 chr12 33382371 33382459 -110403996 - L1MC4 LINE L1 -490 7318 7233 940 245 137 35 chr12 33382564 33382891 -110403564 - L1ME3A LINE L1 -110 6060 5768 210 37 0 0 chr12 33382891 33382918 -110403537 + (TG)n Simple_repeat Simple_repeat 2 28 0 940 245 137 35 chr12 33382918 33383562 -110402893 - L1ME3A LINE L1 -402 5768 5191 2292 69 7 14 chr12 33383562 33383851 -110402604 - AluSq SINE Alu -16 297 11 940 245 137 35 chr12 33383851 33384128 -110402327 - L1ME3A LINE L1 -979 5191 4595 2359 61 0 20 chr12 33384170 33384489 -110401966 - AluSq SINE Alu 0 313 1 2309 71 3 7 chr12 33384778 33385074 -110401381 + AluY SINE Alu 1 295 -16 351 310 139 31 chr12 33385590 33385927 -110400528 - LTR34 LTR ERV1 -64 584 228 2108 123 0 13 chr12 33386418 33386728 -110399727 + AluSq SINE Alu 1 306 -7 181 195 0 24 chr12 33388223 33388264 -110398191 - MIR SINE MIR -142 120 81 232 224 30 0 chr12 33389722 33389781 -110396674 + MIR SINE MIR 88 151 -111 2114 98 11 3 chr12 33389781 33390066 -110396389 + AluSq SINE Alu 1 287 -26 27 87 0 0 chr12 33394696 33394765 -110391690 + GC_rich Low_complexity Low_complexity 1 69 0 22 35 0 0 chr12 33395141 33395170 -110391285 + GC_rich Low_complexity Low_complexity 1 29 0 1334 101 10 15 chr12 33398086 33398285 -110388170 + AluSg/x SINE Alu 114 311 -1 281 321 12 24 chr12 33398303 33398387 -110388068 + L2 LINE L2 3144 3226 -46 714 203 0 0 chr12 33398459 33398592 -110387863 + AluJo SINE Alu 1 133 -169 1616 108 24 138 chr12 33398595 33398936 -110387519 + AluYb8 SINE Alu 2 303 -5 197 33 33 0 chr12 33398936 33398966 -110387489 + (TA)n Simple_repeat Simple_repeat 1 31 0 721 261 0 7 chr12 33398971 33399124 -110387331 + AluJo SINE Alu 137 288 -14 2088 112 3 7 chr12 33399134 33399440 -110387015 + AluSp SINE Alu 1 305 0 29 0 0 0 chr12 33399440 33399469 -110386986 + AT_rich Low_complexity Low_complexity 1 29 0 2384 103 0 3 chr12 33399804 33400114 -110386341 + AluSg SINE Alu 1 309 -1 2424 84 0 7 chr12 33400257 33400553 -110385902 + AluSg SINE Alu 1 294 -16 26 30 0 0 chr12 33400758 33400791 -110385664 + AT_rich Low_complexity Low_complexity 1 33 0 2220 92 3 3 chr12 33401124 33401440 -110385015 - AluSp SINE Alu 0 316 1 206 240 20 0 chr12 33401569 33401619 -110384836 - L2 LINE L2 -1 3271 3221 2191 92 0 24 chr12 33402306 33402635 -110383820 - AluSq SINE Alu 0 322 1 308 293 162 20 chr12 33402683 33402881 -110383574 + L3 LINE CR1 1099 1324 -253 194 167 0 0 chr12 33403256 33403292 -110383163 - L2 LINE L2 -254 3059 3024 939 207 6 0 chr12 33403672 33403907 -110382548 + FRAM SINE Alu 1 236 0 1943 153 0 10 chr12 33404120 33404414 -110382041 - AluSx SINE Alu -21 291 1 293 304 223 0 chr12 33405135 33405283 -110381172 + MIR SINE MIR 40 220 -42 235 319 0 0 chr12 33405590 33405681 -110380774 + MIR SINE MIR 70 160 -102 24 0 0 0 chr12 33406030 33406054 -110380401 + AT_rich Low_complexity Low_complexity 1 24 0 690 224 52 84 chr12 33406762 33407070 -110379385 - MER46C DNA MER2_type -39 299 2 221 259 62 12 chr12 33407272 33407353 -110379102 - MIR SINE MIR -113 149 65 1921 167 10 3 chr12 33407477 33407783 -110378672 - AluSx SINE Alu -4 308 1 2284 91 0 31 chr12 33408202 33408520 -110377935 - AluSx SINE Alu -4 308 1 261 269 92 31 chr12 33408557 33408687 -110377768 + MIR SINE MIR 20 157 -105 2302 113 3 0 chr12 33408983 33409293 -110377162 + AluSp SINE Alu 1 311 -2 1471 147 127 12 chr12 33409584 33409869 -110376586 + AluSg SINE Alu 1 310 0 1787 136 3 45 chr12 33409890 33410198 -110376257 + AluJo SINE Alu 18 312 0 2600 175 88 31 chr12 33410555 33411269 -110375186 - L1MDa LINE L1 -4757 1783 1029 1517 172 56 8 chr12 33411493 33411786 -110374669 + AluJb SINE Alu 1 306 0 1074 189 0 0 chr12 33411795 33411970 -110374485 + FAM SINE Alu 1 175 0 1051 190 9 32 chr12 33412148 33412364 -110374091 - AluJb SINE Alu -101 211 1 2352 95 0 7 chr12 33412372 33412677 -110373778 - AluSc SINE Alu -6 303 1 2072 125 0 0 chr12 33413401 33413680 -110372775 + AluJb SINE Alu 1 279 -33 36 0 0 0 chr12 33413813 33413849 -110372606 + AT_rich Low_complexity Low_complexity 1 36 0 764 149 0 0 chr12 33413849 33413963 -110372492 - FLAM_C SINE Alu -24 119 6 21 0 0 0 chr12 33413967 33413988 -110372467 + AT_rich Low_complexity Low_complexity 1 21 0 2170 101 3 0 chr12 33413988 33414275 -110372180 - AluSx SINE Alu -24 288 1 978 158 10 41 chr12 33414481 33414677 -110371778 - AluSg/x SINE Alu -2 308 119 297 266 13 13 chr12 33414962 33415041 -110371414 + Alu SINE Alu 216 294 -6 * 699 179 76 107 chr12 33415037 33415261 -110371194 + MLT2C1 LTR ERVL 181 397 0 2184 125 0 10 chr12 33415274 33415578 -110370877 - AluSx SINE Alu -9 303 3 1984 122 19 22 chr12 33415590 33415901 -110370554 - AluSx SINE Alu -2 310 1 1110 185 14 31 chr12 33415965 33416249 -110370206 + MLT1A1 LTR MaLR 2 365 0 1742 135 12 0 chr12 33416334 33416614 -110369841 - AluSx SINE Alu 0 321 39 506 161 46 0 chr12 33416892 33416979 -110369476 + AluJo SINE Alu 49 139 -173 2235 115 3 0 chr12 33416983 33417287 -110369168 + AluSq SINE Alu 1 305 -8 320 319 80 45 chr12 33417548 33417981 -110368474 + L2 LINE L2 2636 3096 -176 2332 89 7 0 chr12 33417984 33418286 -110368169 - AluSq SINE Alu -9 304 1 2171 102 7 7 chr12 33418308 33418602 -110367853 - AluSg SINE Alu -16 294 1 1351 186 46 21 chr12 33418686 33418966 -110367489 - AluJo SINE Alu -25 287 1 25 51 0 0 chr12 33419022 33419061 -110367394 + AT_rich Low_complexity Low_complexity 1 39 0 2145 108 3 0 chr12 33419269 33419556 -110366899 - AluSx SINE Alu -24 288 1 201 171 0 0 chr12 33420004 33420039 -110366416 + A-rich Low_complexity Low_complexity 2 36 0 1587 159 0 44 chr12 33420073 33420392 -110366063 + AluJb SINE Alu 1 306 0 181 180 40 0 chr12 33420528 33420578 -110365877 + (TA)n Simple_repeat Simple_repeat 2 53 0 1955 143 6 25 chr12 33420631 33420945 -110365510 - AluJb SINE Alu -4 308 1 2400 87 3 0 chr12 33420955 33421253 -110365202 - AluSp SINE Alu -14 299 1 2409 92 7 10 chr12 33421555 33421861 -110364594 + AluSx SINE Alu 1 305 -7 257 217 67 0 chr12 33422091 33422151 -110364304 + MER116 DNA Mariner 1 64 -16 2399 54 7 0 chr12 33422153 33422466 -110363989 + AluSp SINE Alu 1 315 0 753 160 7 35 chr12 33422549 33422693 -110363762 - FLAM_C SINE Alu 0 143 4 302 256 17 43 chr12 33422841 33422958 -110363497 + L2 LINE L2 2183 2296 -1018 1893 162 0 3 chr12 33423070 33423366 -110363089 - AluJb SINE Alu -17 295 1 450 193 37 176 chr12 33423367 33423478 -110362977 + LTR41 LTR ERVL 506 631 -164 2199 105 0 19 chr12 33423478 33423793 -110362662 - AluSc SINE Alu 0 309 1 450 193 37 176 chr12 33423793 33423906 -110362549 + LTR41 LTR ERVL 631 758 -37 1807 172 45 55 chr12 33423906 33424013 -110362442 + MLT2D LTR ERVL 1 108 -306 2125 104 0 0 chr12 33424013 33424292 -110362163 - AluSg SINE Alu -9 301 23 1807 172 45 55 chr12 33424292 33424602 -110361853 + MLT2D LTR ERVL 108 414 0 2320 85 7 0 chr12 33424608 33424902 -110361553 - AluSg SINE Alu -14 296 1 450 193 37 176 chr12 33424902 33424982 -110361473 + LTR41 LTR ERVL 763 795 0 524 233 5 101 chr12 33424989 33425121 -110361334 + L2 LINE L2 2260 2370 -944 2352 105 0 6 chr12 33425121 33425435 -110361020 - AluSx SINE Alu 0 312 1 524 233 5 101 chr12 33425435 33425491 -110360964 + L2 LINE L2 2370 2430 -884 2090 144 3 0 chr12 33425569 33425875 -110360580 - AluSx SINE Alu -5 307 1 2185 92 7 0 chr12 33425889 33426162 -110360293 - AluSx SINE Alu -17 295 21 314 208 68 117 chr12 33426162 33426426 -110360029 - L1M4 LINE L1 -945 5201 4951 21 0 0 0 chr12 33427215 33427236 -110359219 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 33427798 33427819 -110358636 + AT_rich Low_complexity Low_complexity 1 21 0 890 302 80 32 chr12 33428322 33428514 -110357941 + MARNA DNA Mariner 14 195 -391 723 203 0 0 chr12 33428514 33428642 -110357813 - FLAM_A SINE Alu -2 131 4 890 302 80 32 chr12 33428642 33428976 -110357479 + MARNA DNA Mariner 195 565 -21 2096 104 3 44 chr12 33429086 33429403 -110357052 - AluSq SINE Alu -9 304 1 234 330 61 43 chr12 33429609 33429724 -110356731 + MIR3 SINE MIR 45 161 -47 2294 75 41 0 chr12 33430004 33430299 -110356156 - AluY SINE Alu -4 307 1 198 0 0 0 chr12 33432550 33432572 -110353883 + (T)n Simple_repeat Simple_repeat 1 22 0 363 265 53 63 chr12 33433243 33433432 -110353023 + MIR SINE MIR 2 188 -74 576 192 0 0 chr12 33433445 33433544 -110352911 + AluSg/x SINE Alu 206 304 -5 852 178 33 93 chr12 33434529 33434679 -110351776 + MER3 DNA MER1_type 9 144 -65 2252 102 10 0 chr12 33434679 33434974 -110351481 + AluSx SINE Alu 1 298 -14 852 178 33 93 chr12 33434974 33435037 -110351418 + MER3 DNA MER1_type 144 209 0 278 279 0 0 chr12 33434983 33435044 -110351411 - MER3 DNA MER1_type -108 101 41 * 739 263 90 47 chr12 33435047 33435064 -110351391 + L2 LINE L2 2694 2709 -604 1862 138 28 0 chr12 33435064 33435355 -110351100 + AluSx SINE Alu 1 299 -13 739 263 90 47 chr12 33435355 33435943 -110350512 + L2 LINE L2 2709 3312 -1 1045 133 0 48 chr12 33435988 33436153 -110350302 - AluJb SINE Alu -25 287 131 25 0 0 0 chr12 33436153 33436178 -110350277 + AT_rich Low_complexity Low_complexity 1 25 0 2391 106 0 0 chr12 33436182 33436483 -110349972 + AluSg SINE Alu 2 302 -8 275 272 39 19 chr12 33437219 33437322 -110349133 + MIR SINE MIR 47 151 -111 2257 103 0 7 chr12 33438011 33438312 -110348143 - AluSx SINE Alu -13 299 1 798 202 29 63 chr12 33438808 33438938 -110347517 - L1ME1 LINE L1 -24 6142 6022 2486 61 3 0 chr12 33438938 33439234 -110347221 - AluY SINE Alu -14 297 1 798 202 29 63 chr12 33439234 33439341 -110347114 - L1ME1 LINE L1 -144 6022 5913 1202 206 92 14 chr12 33439342 33439634 -110346821 - L1ME1 LINE L1 -383 5783 5469 1943 124 4 0 chr12 33439634 33439907 -110346548 + AluSq SINE Alu 1 274 -39 242 0 61 0 chr12 33439914 33439947 -110346508 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 664 210 65 84 chr12 33440165 33440381 -110346074 - MLT1D LTR MaLR -10 495 284 1832 105 0 34 chr12 33440379 33440646 -110345809 - AluSx SINE Alu -9 303 46 180 0 0 0 chr12 33440664 33440684 -110345771 + (TTG)n Simple_repeat Simple_repeat 2 21 0 741 90 0 45 chr12 33440712 33440823 -110345632 + U6 snRNA snRNA 2 107 0 1601 148 4 19 chr12 33440958 33441215 -110345240 - AluSx SINE Alu -31 281 29 557 250 65 24 chr12 33441215 33441383 -110345072 - MLT1D LTR MaLR -328 177 3 2140 114 0 3 chr12 33441588 33441894 -110344561 + AluSg SINE Alu 1 305 -5 1730 172 7 0 chr12 33441965 33442256 -110344199 + AluJb SINE Alu 1 293 -19 21 0 0 0 chr12 33442704 33442725 -110343730 + AT_rich Low_complexity Low_complexity 1 21 0 1162 164 16 0 chr12 33442740 33442923 -110343532 - AluJo SINE Alu -126 186 1 473 292 37 35 chr12 33443441 33443636 -110342819 - MIR SINE MIR -33 229 36 194 0 39 0 chr12 33444125 33444151 -110342304 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1767 128 0 55 chr12 33444153 33444481 -110341974 - AluSx SINE Alu -2 310 1 289 204 0 0 chr12 33444487 33444541 -110341914 - L1M4 LINE L1 -3426 2720 2667 2128 95 7 3 chr12 33444550 33444846 -110341609 - AluSc SINE Alu -12 297 1 1635 164 10 7 chr12 33444967 33445271 -110341184 + AluJb SINE Alu 1 305 -7 22 70 0 0 chr12 33445349 33445392 -110341063 + AT_rich Low_complexity Low_complexity 1 43 0 1452 158 122 0 chr12 33445454 33445708 -110340747 - AluJb SINE Alu -15 287 3 893 111 95 265 chr12 33445862 33446221 -110340234 + AluJo SINE Alu 2 299 -3 2439 65 0 3 chr12 33446221 33446528 -110339927 + AluY SINE Alu 1 306 -5 515 78 0 0 chr12 33446720 33446784 -110339671 - AluJ SINE Alu -144 168 105 1912 111 9 49 chr12 33447416 33447740 -110338715 - AluJb SINE Alu -1 311 1 737 145 8 8 chr12 33447967 33448084 -110338371 - AluJ SINE Alu -194 118 2 452 152 0 0 chr12 33448084 33448150 -110338305 + MLT1C LTR MaLR 402 467 0 987 126 46 23 chr12 33448435 33448610 -110337845 + AluSp SINE Alu 122 300 -13 2284 106 3 0 chr12 33448838 33449150 -110337305 + AluSq SINE Alu 1 313 0 1621 186 0 31 chr12 33449265 33449583 -110336872 - AluJb SINE Alu -4 308 1 1932 158 0 0 chr12 33449592 33449890 -110336565 - AluSx SINE Alu -14 298 1 1801 148 3 13 chr12 33450193 33450491 -110335964 - AluSg SINE Alu -15 295 1 683 169 0 8 chr12 33450653 33450771 -110335684 + FLAM_C SINE Alu 2 118 -25 1112 132 0 0 chr12 33451015 33451182 -110335273 + AluSg/x SINE Alu 143 309 -1 1957 137 7 0 chr12 33451189 33451482 -110334973 + AluSx SINE Alu 1 295 -17 2125 126 0 0 chr12 33451485 33451795 -110334660 + AluSx SINE Alu 1 310 -2 1027 90 0 0 chr12 33451888 33452021 -110334434 + AluSg SINE Alu 2 134 -176 1969 85 7 41 chr12 33452022 33452163 -110334292 + AluSg SINE Alu 1 128 -182 2254 73 0 35 chr12 33452163 33452479 -110333976 + AluY SINE Alu 1 305 -6 1969 85 7 41 chr12 33452479 33452630 -110333825 + AluSg SINE Alu 128 283 -27 2158 101 0 0 chr12 33452968 33453265 -110333190 - AluSx SINE Alu -14 298 2 440 304 30 0 chr12 33453349 33453484 -110332971 - MIR SINE MIR -56 206 68 2099 108 6 19 chr12 33455056 33455371 -110331084 + AluSx SINE Alu 1 311 -1 2115 95 7 3 chr12 33457350 33457646 -110328809 + AluSx SINE Alu 1 297 -15 1514 92 60 0 chr12 33458163 33458380 -110328075 + AluSq SINE Alu 67 296 -17 280 140 60 0 chr12 33458498 33458548 -110327907 + Alu SINE Alu 241 293 -9 870 174 7 0 chr12 33458760 33458976 -110327479 - FRAM SINE Alu 0 236 20 434 355 145 17 chr12 33459564 33459984 -110326471 - L3 LINE CR1 -5 1572 1099 2069 92 0 24 chr12 33460032 33460361 -110326094 + AluSq SINE Alu 1 322 0 227 240 20 0 chr12 33461049 33461099 -110325356 + L2 LINE L2 3221 3271 -1 297 335 149 21 chr12 33461216 33461228 -110325227 - MIR SINE MIR 0 262 253 2193 96 3 3 chr12 33461228 33461531 -110324924 + AluSp SINE Alu 1 303 -10 297 335 149 21 chr12 33461531 33461706 -110324749 - MIR SINE MIR -9 253 51 200 180 60 0 chr12 33462570 33462620 -110323835 + (CGTG)n Simple_repeat Simple_repeat 4 56 0 1548 260 72 32 chr12 33463032 33463565 -110322890 - MLT1F1 LTR MaLR -1 566 1 2057 105 0 40 chr12 33463845 33464170 -110322285 + AluSx SINE Alu 1 312 0 381 170 53 53 chr12 33464351 33464445 -110322010 + L2 LINE L2 3173 3266 -47 400 284 123 49 chr12 33464450 33464693 -110321762 - L2 LINE L2 -840 2474 2214 2250 93 0 0 chr12 33465020 33465321 -110321134 - AluSg SINE Alu -9 301 1 25 0 0 0 chr12 33465321 33465346 -110321109 + AT_rich Low_complexity Low_complexity 1 25 0 538 123 0 0 chr12 33465461 33465534 -110320921 - AluSp SINE Alu -112 201 129 2109 99 0 3 chr12 33465540 33465850 -110320605 - AluSx SINE Alu 0 309 1 318 228 63 70 chr12 33465876 33466102 -110320353 + MER34B LTR ERV1 362 734 -53 2160 110 3 3 chr12 33466143 33466451 -110320004 + AluSx SINE Alu 1 308 -4 486 282 46 36 chr12 33467349 33467555 -110318900 - MIR SINE MIR -19 243 36 194 0 39 0 chr12 33468044 33468070 -110318385 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2163 107 0 22 chr12 33468072 33468390 -110318065 - AluSq SINE Alu -2 311 1 1882 100 52 0 chr12 33468409 33468680 -110317775 - AluSx SINE Alu -14 298 14 1483 215 26 0 chr12 33469029 33469331 -110317124 - AluJb SINE Alu -2 310 1 2278 97 3 0 chr12 33469340 33469648 -110316807 - AluSp SINE Alu -3 310 2 1706 291 107 54 chr12 33469650 33470722 -110315733 + L2 LINE L2 1929 3090 -223 818 163 0 0 chr12 33470722 33470851 -110315604 + FLAM_C SINE Alu 2 130 -3 1706 291 107 54 chr12 33470851 33471088 -110315367 + L2 LINE L2 3090 3313 0 2213 102 99 9 chr12 33471165 33471507 -110314948 + THE1C LTR MaLR 3 375 0 2243 103 0 0 chr12 33471578 33471880 -110314575 - AluSc SINE Alu -1 308 7 322 289 104 96 chr12 33472177 33472571 -110313884 - MLT1K LTR MaLR -10 578 182 1732 176 7 3 chr12 33472751 33473058 -110313397 + AluJb SINE Alu 1 308 -4 1074 140 0 0 chr12 33473225 33473396 -110313059 + AluSg/x SINE Alu 135 305 -5 2074 96 4 0 chr12 33473398 33473704 -110312751 + AluSg SINE Alu 1 307 0 1639 171 0 16 chr12 33474739 33475044 -110311411 + AluJo SINE Alu 1 300 -12 2131 92 3 0 chr12 33475203 33475496 -110310959 + AluSg SINE Alu 1 294 -16 353 303 33 25 chr12 33475951 33476073 -110310382 + MIR SINE MIR 67 189 -73 331 61 82 0 chr12 33476094 33476143 -110310312 - MADE1 DNA Mariner -27 53 1 689 256 18 0 chr12 33476200 33476368 -110310087 + FAM SINE Alu 1 171 -4 2276 70 3 0 chr12 33476520 33476845 -110309610 + AluSp SINE Alu 1 326 0 2035 127 10 0 chr12 33476904 33477203 -110309252 - AluSx SINE Alu -10 302 1 544 198 18 90 chr12 33477203 33477370 -110309085 - MER58B DNA MER1_type -6 335 181 1761 158 3 0 chr12 33477370 33477662 -110308793 - AluJb SINE Alu -19 293 1 1446 191 31 0 chr12 33477663 33477951 -110308504 - AluJb SINE Alu -15 297 1 378 244 71 0 chr12 33477981 33478108 -110308347 - L1ME4a LINE L1 -265 5856 5721 2159 96 0 0 chr12 33478143 33478434 -110308021 - AluSg SINE Alu -19 291 1 183 80 0 0 chr12 33478464 33478489 -110307966 + (A)n Simple_repeat Simple_repeat 1 25 0 1246 125 5 34 chr12 33478592 33478770 -110307685 - AluSg/x SINE Alu 0 308 136 210 37 0 0 chr12 33478780 33478807 -110307648 + (TG)n Simple_repeat Simple_repeat 2 28 0 2208 91 10 3 chr12 33478807 33479104 -110307351 - AluSg SINE Alu -8 302 1 1246 125 5 34 chr12 33479104 33479154 -110307301 - AluSg/x SINE Alu -172 136 86 2128 71 0 37 chr12 33479824 33480149 -110306306 - AluY SINE Alu 0 314 1 1958 85 53 7 chr12 33480346 33480629 -110305826 - AluSx SINE Alu -16 296 1 378 0 0 0 chr12 33481289 33481331 -110305124 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1584 156 0 35 chr12 33481338 33481626 -110304829 - AluJo SINE Alu -34 278 1 2132 110 0 7 chr12 33481662 33481971 -110304484 + AluSg1 SINE Alu 1 307 -2 1197 80 6 0 chr12 33481971 33482134 -110304321 + AluSp SINE Alu 134 297 -16 354 337 140 6 chr12 33482138 33482316 -110304139 - MIR SINE MIR -10 252 51 200 180 60 0 chr12 33483181 33483231 -110303224 + (CGTG)n Simple_repeat Simple_repeat 4 56 0 1565 260 71 31 chr12 33483643 33484176 -110302279 - MLT1F1 LTR MaLR -1 566 1 2057 105 0 40 chr12 33484456 33484781 -110301674 + AluSx SINE Alu 1 312 0 381 170 53 53 chr12 33484962 33485056 -110301399 + L2 LINE L2 3173 3266 -47 391 296 119 45 chr12 33485061 33485304 -110301151 - L2 LINE L2 -840 2474 2214 2063 110 3 0 chr12 33485631 33485931 -110300524 - AluSg SINE Alu -9 301 1 676 190 22 15 chr12 33485963 33486100 -110300355 - AluJb SINE Alu -39 273 136 2037 108 7 3 chr12 33486123 33486419 -110300036 + AluSq SINE Alu 1 297 -16 575 126 0 87 chr12 33486456 33486559 -110299896 + U6 snRNA snRNA 1 94 -13 828 182 0 0 chr12 33486560 33486703 -110299752 - AluSp/q SINE Alu -9 304 162 976 108 0 0 chr12 33487105 33487244 -110299211 - AluSq/x SINE Alu -174 139 1 2114 86 6 16 chr12 33487452 33487766 -110298689 - AluY SINE Alu 0 311 1 1908 153 0 0 chr12 33487767 33488061 -110298394 - AluJb SINE Alu -14 298 5 286 302 92 21 chr12 33488130 33488286 -110298169 - MER5A DNA MER1_type -5 184 8 214 329 61 59 chr12 33488477 33488700 -110297755 + MIR SINE MIR 28 250 -12 192 306 35 24 chr12 33488714 33488799 -110297656 - L2 LINE L2 -239 3033 2948 2169 104 3 0 chr12 33488852 33489151 -110297304 - AluSg1 SINE Alu -9 300 1 674 185 0 8 chr12 33489348 33489467 -110296988 - FLAM_C SINE Alu -25 118 1 846 150 80 71 chr12 33489518 33489632 -110296823 + AluJo SINE Alu 2 114 -198 1262 198 40 4 chr12 33489632 33489910 -110296545 + AluSc SINE Alu 3 290 -19 846 150 80 71 chr12 33489910 33490021 -110296434 + AluJo SINE Alu 114 229 -83 1335 116 20 15 chr12 33490431 33490629 -110295826 + AluSg/x SINE Alu 107 305 -5 1351 174 5 0 chr12 33490671 33490889 -110295566 + AluJo SINE Alu 84 302 -10 287 201 188 56 chr12 33490889 33490926 -110295529 - MLT1A1 LTR MaLR -32 333 302 2179 109 3 0 chr12 33490926 33491210 -110295245 + AluSq SINE Alu 1 284 -29 198 43 0 0 chr12 33491210 33491233 -110295222 + (CAAAA)n Simple_repeat Simple_repeat 3 175 0 287 201 188 56 chr12 33491233 33491337 -110295118 - MLT1A1 LTR MaLR -63 302 171 2332 105 3 0 chr12 33492074 33492380 -110294075 - AluSq SINE Alu -6 307 1 383 55 36 0 chr12 33493039 33493094 -110293361 - L1MA2 LINE L1 -6 6298 6242 1553 109 70 4 chr12 33493372 33493629 -110292826 - L1MA3 LINE L1 0 6305 6032 2419 73 7 0 chr12 33493639 33493942 -110292513 - AluSp SINE Alu -8 305 1 190 333 49 0 chr12 33493981 33494062 -110292393 - L2 LINE L2 -680 2634 2550 1839 155 30 10 chr12 33494429 33494725 -110291730 - AluJo SINE Alu -10 302 1 654 119 30 0 chr12 33494789 33494890 -110291565 + AluSg/x SINE Alu 198 301 -11 183 80 0 0 chr12 33496178 33496203 -110290252 + (T)n Simple_repeat Simple_repeat 1 25 0 1605 115 0 0 chr12 33496203 33496421 -110290034 + AluSg/x SINE Alu 91 308 -2 2303 99 20 3 chr12 33496422 33496725 -110289730 + AluSg SINE Alu 1 308 -2 1726 167 0 27 chr12 33496735 33497035 -110289420 + AluJb SINE Alu 1 292 -20 1398 176 9 108 chr12 33497093 33497277 -110289178 - AluJb SINE Alu 0 302 101 2023 130 0 0 chr12 33497277 33497554 -110288901 - AluSq SINE Alu -36 277 1 2424 87 0 0 chr12 33497560 33497860 -110288595 - AluSq SINE Alu -13 300 1 1398 176 9 108 chr12 33497860 33498003 -110288452 - AluJb SINE Alu -206 96 1 1804 157 0 7 chr12 33498022 33498308 -110288147 - AluJb SINE Alu -18 294 11 450 0 0 0 chr12 33498312 33498362 -110288093 + (TATG)n Simple_repeat Simple_repeat 2 51 0 2052 134 0 0 chr12 33498362 33498646 -110287809 - AluSg SINE Alu -26 284 1 2181 108 3 3 chr12 33498650 33498946 -110287509 - AluSx SINE Alu -16 296 1 1933 130 11 3 chr12 33499616 33499900 -110286555 - AluSx SINE Alu -26 286 1 2324 71 0 0 chr12 33499916 33500229 -110286226 - AluSg SINE Alu 0 313 1 565 260 160 28 chr12 33500388 33500707 -110285748 + MLT1J LTR MaLR 151 511 0 1951 145 6 22 chr12 33500814 33501131 -110285324 + AluSx SINE Alu 1 312 0 2382 101 7 0 chr12 33501145 33501452 -110285003 + AluSx SINE Alu 1 309 -3 444 296 112 16 chr12 33501616 33501953 -110284502 - LTR16A LTR ERVL -6 444 24 2433 92 0 0 chr12 33502275 33502579 -110283876 - AluSq SINE Alu -9 304 1 817 164 8 0 chr12 33502608 33502736 -110283719 - FLAM_C SINE Alu -14 129 1 525 232 166 33 chr12 33502886 33503097 -110283358 + L1ME LINE L1 5446 5684 -437 609 290 50 27 chr12 33503098 33503188 -110283267 - MIR SINE MIR -17 245 159 1747 176 3 17 chr12 33503188 33503505 -110282950 - AluJo SINE Alu 0 312 1 609 290 50 27 chr12 33503505 33503635 -110282820 - MIR SINE MIR -103 159 20 2209 91 17 3 chr12 33503841 33504137 -110282318 - AluSp SINE Alu -13 300 1 2467 78 0 13 chr12 33504137 33504443 -110282012 - AluSc SINE Alu -7 302 1 1811 129 93 0 chr12 33504768 33505048 -110281407 - AluSx SINE Alu -6 306 1 2028 153 9 38 chr12 33505137 33505484 -110280971 - MER1B DNA MER1_type 0 337 1 1867 153 21 0 chr12 33505731 33506013 -110280442 - AluJb SINE Alu -20 292 5 551 169 0 0 chr12 33506907 33506996 -110279459 - FLAM_C SINE Alu -21 122 34 1820 149 9 41 chr12 33507338 33507451 -110279004 + AluJb SINE Alu 1 116 -196 1998 119 35 3 chr12 33507451 33507737 -110278718 + AluSg SINE Alu 1 295 -15 1820 149 9 41 chr12 33507737 33507938 -110278517 + AluJb SINE Alu 116 305 -7 1168 152 0 52 chr12 33508396 33508607 -110277848 - AluJo SINE Alu -31 281 82 2368 96 0 3 chr12 33508633 33508935 -110277520 - AluSp SINE Alu -10 303 3 2188 97 3 29 chr12 33509054 33509365 -110277090 - AluSx SINE Alu -9 303 1 2086 93 7 11 chr12 33509531 33509800 -110276655 + AluSx SINE Alu 38 305 -7 257 217 67 0 chr12 33510030 33510090 -110276365 + MER116 DNA Mariner 1 64 -16 2399 54 7 0 chr12 33510092 33510405 -110276050 + AluSp SINE Alu 1 315 0 753 160 7 35 chr12 33510488 33510632 -110275823 - FLAM_C SINE Alu 0 143 4 302 256 17 43 chr12 33510780 33510897 -110275558 + L2 LINE L2 2183 2296 -1018 1893 162 0 3 chr12 33511009 33511305 -110275150 - AluJb SINE Alu -17 295 1 450 193 37 176 chr12 33511306 33511417 -110275038 + LTR41 LTR ERVL 506 631 -164 2199 105 0 19 chr12 33511417 33511732 -110274723 - AluSc SINE Alu 0 309 1 450 193 37 176 chr12 33511732 33511845 -110274610 + LTR41 LTR ERVL 631 758 -37 1807 172 45 55 chr12 33511845 33511952 -110274503 + MLT2D LTR ERVL 1 108 -306 2125 104 0 0 chr12 33511952 33512231 -110274224 - AluSg SINE Alu -9 301 23 1807 172 45 55 chr12 33512231 33512541 -110273914 + MLT2D LTR ERVL 108 414 0 2320 85 7 0 chr12 33512547 33512841 -110273614 - AluSg SINE Alu -14 296 1 450 193 37 176 chr12 33512841 33512921 -110273534 + LTR41 LTR ERVL 763 795 0 361 237 8 92 chr12 33512928 33513059 -110273396 + L2 LINE L2 2260 2379 -935 2259 118 0 6 chr12 33513060 33513374 -110273081 - AluSx SINE Alu 0 312 1 599 91 23 0 chr12 33513426 33513514 -110272941 - AluSg/x SINE Alu -8 304 215 962 228 112 10 chr12 33513832 33514135 -110272320 - MER46C DNA MER2_type -3 335 2 2260 118 10 0 chr12 33515025 33515329 -110271126 + AluSq SINE Alu 1 307 -6 1960 149 13 7 chr12 33515329 33515637 -110270818 + AluSx SINE Alu 1 311 -1 256 344 42 0 chr12 33515758 33515854 -110270601 + L2 LINE L2 3173 3272 0 2155 103 0 23 chr12 33516016 33516316 -110270139 - AluSq SINE Alu -20 293 1 194 291 145 26 chr12 33516616 33516733 -110269722 + L2 LINE L2 2924 3054 -218 2059 126 3 16 chr12 33516901 33517211 -110269244 - AluSx SINE Alu -4 308 3 2138 117 10 0 chr12 33517723 33518014 -110268441 - AluSx SINE Alu -18 294 1 655 266 42 64 chr12 33518328 33518428 -110268027 + L1MEd LINE L1 1058 1159 -5237 2180 105 18 0 chr12 33518428 33518713 -110267742 + AluSc SINE Alu 1 290 -19 655 266 42 64 chr12 33518713 33518761 -110267694 + L1MEd LINE L1 1159 1207 -5189 2289 125 0 0 chr12 33518761 33519073 -110267382 + AluSx SINE Alu 1 312 0 655 266 42 64 chr12 33519073 33519458 -110266997 + L1MEd LINE L1 1207 1616 -4780 322 308 10 39 chr12 33519464 33519568 -110266887 + L1MEd LINE L1 1545 1645 -4751 1609 130 68 55 chr12 33519693 33519985 -110266470 + AluJo SINE Alu 1 296 -16 1795 168 3 3 chr12 33520321 33520606 -110265849 + AluJo SINE Alu 1 285 -27 198 0 0 0 chr12 33520606 33520628 -110265827 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 307 224 0 0 chr12 33520628 33520695 -110265760 + L1MEd LINE L1 2998 3064 -3151 412 275 56 33 chr12 33520730 33520874 -110265581 + L1MEd LINE L1 3151 3290 -2925 1792 177 0 16 chr12 33520874 33521185 -110265270 + AluJb SINE Alu 1 306 -6 412 275 56 33 chr12 33521185 33521400 -110265055 + L1MEd LINE L1 3290 3518 -2697 2124 127 10 0 chr12 33521403 33521710 -110264745 + AluSx SINE Alu 1 310 -2 648 231 99 58 chr12 33521727 33521969 -110264486 + MER21B LTR ERV1 329 580 -283 1686 144 133 32 chr12 33522023 33522303 -110264152 + MSTB1 LTR MaLR 51 374 -58 1860 159 7 3 chr12 33522303 33522461 -110263994 - AluJb SINE Alu -16 296 135 2350 89 10 0 chr12 33522461 33522763 -110263692 - AluSp SINE Alu -8 305 1 1860 159 7 3 chr12 33522763 33522899 -110263556 - AluJb SINE Alu -177 135 1 1686 144 133 32 chr12 33522899 33522965 -110263490 + MSTB1 LTR MaLR 374 432 0 465 242 174 6 chr12 33522978 33523139 -110263316 + MER21B LTR ERV1 614 801 -62 2181 186 30 2 chr12 33523144 33523543 -110262912 + MER21B-int LTR ERV1 18 427 -3764 470 229 17 8 chr12 33523551 33523669 -110262786 - MER21-int LTR ERV1 -3657 534 416 1216 153 83 31 chr12 33523669 33523898 -110262557 - AluSx SINE Alu -17 295 55 434 74 0 0 chr12 33523907 33523961 -110262494 - AluSq/x SINE Alu -194 119 66 4845 239 95 72 chr12 33523964 33524655 -110261800 + MER21B-int LTR ERV1 505 1179 -3012 2125 128 0 0 chr12 33524655 33524943 -110261512 - AluSx SINE Alu -24 288 1 4845 239 95 72 chr12 33524943 33525310 -110261145 + MER21B-int LTR ERV1 1179 1536 -2655 1780 159 7 0 chr12 33525310 33525581 -110260874 - AluJb SINE Alu -31 281 9 4845 239 95 72 chr12 33525581 33526369 -110260086 + MER21B-int LTR ERV1 1536 2394 -1797 397 304 83 33 chr12 33527334 33527515 -110258940 + MIR SINE MIR 1 190 -72 1803 180 0 3 chr12 33527825 33528120 -110258335 + AluJo SINE Alu 9 302 -10 2333 108 0 6 chr12 33528193 33528507 -110257948 + AluSx SINE Alu 1 312 0 363 299 24 90 chr12 33528776 33528987 -110257468 - MIR SINE MIR -48 214 18 933 181 11 28 chr12 33528987 33529164 -110257291 + FAM SINE Alu 2 175 0 2326 98 0 3 chr12 33529299 33529594 -110256861 + AluSg SINE Alu 1 294 -16 25 31 0 0 chr12 33530408 33530440 -110256015 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr12 33530657 33530686 -110255769 + AT_rich Low_complexity Low_complexity 1 29 0 1572 183 21 7 chr12 33530779 33531063 -110255392 + AluJb SINE Alu 5 292 -20 198 0 0 0 chr12 33531357 33531379 -110255076 + (CA)n Simple_repeat Simple_repeat 1 22 0 1915 135 10 3 chr12 33531907 33532203 -110254252 + AluSq SINE Alu 1 298 -15 603 136 0 93 chr12 33532241 33532349 -110254106 + U6 snRNA snRNA 1 99 -8 1946 151 3 3 chr12 33532349 33532648 -110253807 - AluJb SINE Alu -13 299 1 181 346 50 57 chr12 33532714 33532782 -110253673 + MER5A DNA MER1_type 6 73 -116 2067 86 65 3 chr12 33532782 33533072 -110253383 + AluY SINE Alu 2 309 -2 181 346 50 57 chr12 33533072 33533162 -110253293 + MER5A DNA MER1_type 73 163 -26 556 190 36 0 chr12 33533196 33533333 -110253122 - L1MA9 LINE L1 -1 6311 6170 2311 72 4 0 chr12 33533371 33533648 -110252807 + AluSp SINE Alu 1 278 -35 2506 73 3 0 chr12 33533650 33533953 -110252502 + AluSx SINE Alu 1 304 -8 228 54 0 0 chr12 33533953 33533990 -110252465 + AluSp SINE Alu 264 300 -3 2303 92 31 0 chr12 33534171 33534463 -110251992 + AluSp SINE Alu 1 301 -12 603 240 166 74 chr12 33535382 33535707 -110250748 + L1ME LINE L1 5390 5744 -377 307 236 171 21 chr12 33536102 33536242 -110250213 + MIR3 SINE MIR 17 177 -31 212 182 0 0 chr12 33537504 33537548 -110248907 - MIR SINE MIR -10 252 209 2154 118 20 0 chr12 33537559 33537865 -110248590 + AluSx SINE Alu 1 312 0 2048 125 7 7 chr12 33537897 33538202 -110248253 - AluSq SINE Alu -8 305 1 2193 78 3 14 chr12 33538205 33538489 -110247966 - AluSq SINE Alu -12 301 21 307 218 43 146 chr12 33538489 33538769 -110247686 - L1M4 LINE L1 -945 5201 4951 21 0 0 0 chr12 33539558 33539579 -110246876 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 33540141 33540162 -110246293 + AT_rich Low_complexity Low_complexity 1 21 0 890 302 80 32 chr12 33540665 33540857 -110245598 + MARNA DNA Mariner 14 195 -391 723 203 0 0 chr12 33540857 33540985 -110245470 - FLAM_A SINE Alu -2 131 4 890 302 80 32 chr12 33540985 33541319 -110245136 + MARNA DNA Mariner 195 565 -21 2129 104 3 41 chr12 33541429 33541745 -110244710 - AluSq SINE Alu -9 304 1 234 330 61 43 chr12 33541951 33542066 -110244389 + MIR3 SINE MIR 45 161 -47 2294 75 41 0 chr12 33542346 33542641 -110243814 - AluY SINE Alu -4 307 1 180 0 0 0 chr12 33544893 33544913 -110241542 + (T)n Simple_repeat Simple_repeat 1 20 0 337 258 60 66 chr12 33545594 33545761 -110240694 + MIR SINE MIR 2 167 -95 576 192 0 0 chr12 33545808 33545907 -110240548 + AluSg/x SINE Alu 206 304 -5 852 178 33 93 chr12 33546892 33547042 -110239413 + MER3 DNA MER1_type 9 144 -65 2264 98 10 0 chr12 33547042 33547337 -110239118 + AluSx SINE Alu 1 298 -14 852 178 33 93 chr12 33547337 33547400 -110239055 + MER3 DNA MER1_type 144 209 0 278 279 0 0 chr12 33547346 33547407 -110239048 - MER3 DNA MER1_type -108 101 41 * 220 233 0 27 chr12 33547410 33547427 -110239028 + L2 LINE L2 2694 2710 -604 1840 141 28 0 chr12 33547427 33547718 -110238737 + AluSx SINE Alu 1 299 -13 220 233 0 27 chr12 33547718 33547773 -110238682 + L2 LINE L2 2710 2764 -550 347 124 199 16 chr12 33547773 33547853 -110238602 + AluSc SINE Alu 223 293 -6 25 0 0 0 chr12 33548046 33548071 -110238384 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr12 33548182 33548205 -110238250 + AT_rich Low_complexity Low_complexity 1 23 0 1578 188 3 11 chr12 33548597 33548884 -110237571 + AluJb SINE Alu 1 285 -27 766 130 0 43 chr12 33548884 33549022 -110237433 - AluJo/FLAM SINE Alu -179 133 2 1012 155 13 0 chr12 33549027 33549182 -110237273 - FRAM SINE Alu -20 156 1 1633 167 53 11 chr12 33549236 33549518 -110236937 - AluJb SINE Alu -18 294 1 842 175 136 6 chr12 33549802 33549979 -110236476 + MLT1D LTR MaLR 306 505 0 25 0 0 0 chr12 33550462 33550487 -110235968 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr12 33550580 33550600 -110235855 + (TG)n Simple_repeat Simple_repeat 1 20 0 1971 147 3 0 chr12 33550624 33550910 -110235545 - AluSq SINE Alu -26 287 1 2163 95 50 0 chr12 33551796 33552079 -110234376 - AluSq SINE Alu -16 297 1 400 216 95 60 chr12 33552816 33552932 -110233523 + MIR SINE MIR 35 154 -108 1885 164 7 3 chr12 33552957 33553249 -110233206 + AluSx SINE Alu 1 293 -19 1809 138 6 58 chr12 33553249 33553561 -110232894 + AluJb SINE Alu 5 300 -12 255 208 0 0 chr12 33553685 33553733 -110232722 - AluSc SINE Alu -3 296 249 477 239 61 6 chr12 33553739 33553902 -110232553 + AluSq SINE Alu 95 266 -47 1890 88 42 78 chr12 33554059 33554365 -110232090 + AluSc SINE Alu 1 295 -14 400 296 119 6 chr12 33555093 33555269 -110231186 + MIR3 SINE MIR 1 196 -12 673 146 39 0 chr12 33556173 33556276 -110230179 + FLAM_C SINE Alu 2 108 -35 22 35 0 0 chr12 33557024 33557053 -110229402 + AT_rich Low_complexity Low_complexity 1 29 0 502 203 0 32 chr12 33557053 33557176 -110229279 - L1MB8 LINE L1 -5 6173 6055 1207 179 155 8 chr12 33557447 33557698 -110228757 + AluJo SINE Alu 9 296 -16 233 300 25 0 chr12 33557720 33557800 -110228655 + MIR3 SINE MIR 127 208 0 190 306 79 22 chr12 33557881 33558020 -110228435 + L2 LINE L2 2764 2904 -368 291 122 0 0 chr12 33558092 33558133 -110228322 - 5S rRNA rRNA -79 42 2 2213 107 0 3 chr12 33559344 33559643 -110226812 - AluSx SINE Alu -4 308 11 850 163 0 8 chr12 33559644 33559773 -110226682 - AluJb SINE Alu -167 145 18 2233 97 17 3 chr12 33559803 33560092 -110226363 - AluSx SINE Alu -19 293 1 209 331 55 16 chr12 33560092 33560209 -110226246 + L2 LINE L2 1867 1991 -1323 2243 117 0 0 chr12 33560228 33560526 -110225929 - AluSq SINE Alu -15 298 1 241 327 30 30 chr12 33560607 33560708 -110225747 + L2 LINE L2 2990 3090 -182 2411 60 28 0 chr12 33560838 33561123 -110225332 - AluY SINE Alu -18 293 1 283 226 36 24 chr12 33561224 33561308 -110225147 + HsTC2 DNA Tc2 1 85 -1813 247 225 296 0 chr12 33561388 33561530 -110224925 + L1ME LINE L1 5734 5917 -204 2001 122 24 0 chr12 33561675 33561962 -110224493 - AluSg SINE Alu -16 294 1 514 294 87 13 chr12 33563073 33563304 -110223151 + L2 LINE L2 3066 3313 0 2326 101 3 3 chr12 33563339 33563647 -110222808 + AluSx SINE Alu 3 310 -2 615 232 67 24 chr12 33563861 33564025 -110222430 - FAM SINE Alu 0 175 5 787 182 0 39 chr12 33564347 33564501 -110221954 - AluJb SINE Alu -16 296 149 462 163 61 31 chr12 33564504 33564602 -110221853 - AluSg/x SINE Alu -96 214 114 1165 109 0 0 chr12 33564715 33564862 -110221593 - AluSq/x SINE Alu -165 147 1 1184 175 16 0 chr12 33565100 33565283 -110221172 + AluJo SINE Alu 1 186 -126 21 0 0 0 chr12 33565298 33565319 -110221136 + AT_rich Low_complexity Low_complexity 1 21 0 1846 172 7 0 chr12 33565767 33566058 -110220397 - AluJb SINE Alu -19 293 1 2293 106 3 0 chr12 33566128 33566430 -110220025 - AluSg SINE Alu -5 305 3 8600 93 16 23 chr12 33566432 33566547 -110219908 + HSMAR1 DNA Mariner 95 209 -1078 2201 100 40 3 chr12 33566547 33566848 -110219607 - AluSx SINE Alu 0 312 1 8600 93 16 23 chr12 33566848 33567216 -110219239 + HSMAR1 DNA Mariner 209 578 -709 1976 122 14 4 chr12 33567216 33567523 -110218932 + AluSx SINE Alu 1 310 0 8600 93 16 23 chr12 33567523 33568237 -110218218 + HSMAR1 DNA Mariner 578 1285 -2 475 229 10 0 chr12 33568238 33568334 -110218121 - MER58A DNA MER1_type -10 97 1 566 280 139 15 chr12 33568343 33568421 -110218034 + MLT1G LTR MaLR 110 177 -418 198 0 0 0 chr12 33568421 33568443 -110218012 + (TC)n Simple_repeat Simple_repeat 2 23 0 566 280 139 15 chr12 33568443 33568733 -110217722 + MLT1G LTR MaLR 177 547 -48 832 261 22 35 chr12 33568733 33568756 -110217699 + MER58A DNA MER1_type 1 23 -2397 1282 216 18 85 chr12 33568756 33569145 -110217310 + MLT1A1 LTR MaLR 1 363 -2 832 261 22 35 chr12 33569145 33569347 -110217108 + MER58A DNA MER1_type 23 223 -1 195 319 42 0 chr12 33569407 33569479 -110216976 + L2 LINE L2 2995 3069 -244 1934 150 6 13 chr12 33570094 33570408 -110216047 + AluSx SINE Alu 1 312 0 1909 132 3 63 chr12 33570633 33570951 -110215504 - AluSx SINE Alu -11 301 3 239 328 0 0 chr12 33571764 33571822 -110214633 + Tigger3(Golem) DNA MER2_type 1 58 -2971 758 144 23 45 chr12 33571824 33571956 -110214499 + Tigger3(Golem) DNA MER2_type 2878 3006 -23 207 161 0 0 chr12 33571956 33571987 -110214468 + polypyrimidine Low_complexity Low_complexity 2 32 0 268 382 27 9 chr12 33571988 33572098 -110214357 - L2 LINE L2 -25 3247 3136 370 333 114 31 chr12 33572264 33572615 -110213840 - L2 LINE L2 -1 3312 2933 290 297 232 14 chr12 33572639 33572915 -110213540 - L2 LINE L2 -688 2626 2291 1873 169 3 0 chr12 33573008 33573304 -110213151 + AluJb SINE Alu 1 297 -15 1584 136 21 4 chr12 33573891 33574134 -110212321 + AluSx SINE Alu 43 289 -23 237 117 50 17 chr12 33574196 33574256 -110212199 + GA-rich Low_complexity Low_complexity 4 65 0 646 205 0 8 chr12 33575101 33575228 -110211227 - AluJo SINE Alu -102 210 85 182 188 0 0 chr12 33575899 33575931 -110210524 + MIR SINE MIR 81 112 -150 1034 104 0 0 chr12 33576090 33576224 -110210231 + AluSq/x SINE Alu 1 134 -178 2108 130 7 7 chr12 33576225 33576532 -110209923 + AluSx SINE Alu 1 307 -5 284 234 211 0 chr12 33577182 33577310 -110209145 + MIR SINE MIR 32 186 -76 1467 117 5 19 chr12 33577761 33577974 -110208481 + AluSx SINE Alu 1 210 -102 2284 87 14 0 chr12 33578174 33578463 -110207992 + AluSg SINE Alu 1 293 -17 2108 141 3 0 chr12 33578477 33578782 -110207673 + AluSx SINE Alu 1 306 -6 241 232 0 18 chr12 33578860 33578916 -110207539 - L2 LINE L2 -884 2430 2376 2390 101 3 0 chr12 33578916 33579222 -110207233 + AluSx SINE Alu 1 307 -5 444 296 112 16 chr12 33579386 33579723 -110206732 - LTR16A LTR ERVL -6 444 24 2458 92 0 0 chr12 33580045 33580348 -110206107 - AluSq SINE Alu -9 304 2 378 304 30 0 chr12 33580432 33580567 -110205888 - MIR SINE MIR -56 206 68 2225 108 6 19 chr12 33582140 33582455 -110204000 + AluSx SINE Alu 1 311 -1 2279 95 7 0 chr12 33584434 33584730 -110201725 + AluSx SINE Alu 1 298 -14 316 71 0 0 chr12 33585247 33585289 -110201166 + AluSg/x SINE Alu 65 106 -194 228 54 0 0 chr12 33585557 33585594 -110200861 - Alu SINE Alu -3 300 264 2206 97 3 7 chr12 33585594 33585884 -110200571 - AluSx SINE Alu -8 304 16 708 139 0 151 chr12 33585905 33586071 -110200384 + FLAM_C SINE Alu 2 142 -1 2412 98 0 0 chr12 33586075 33586382 -110200073 + AluSx SINE Alu 1 307 -5 1351 174 5 0 chr12 33586424 33586642 -110199813 + AluJo SINE Alu 84 302 -10 1100 209 155 30 chr12 33586642 33586679 -110199776 - MLT1A1 LTR MaLR -32 333 302 2047 110 3 28 chr12 33586679 33586994 -110199461 + AluSq SINE Alu 1 308 0 1100 209 155 30 chr12 33586994 33587251 -110199204 - MLT1A1 LTR MaLR -63 302 1 356 223 46 31 chr12 33587376 33587506 -110198949 + L1M4 LINE L1 5167 5298 -848 1343 170 22 9 chr12 33587802 33588032 -110198423 - AluSx SINE Alu -79 233 1 1312 152 118 13 chr12 33588770 33589007 -110197448 + AluSx SINE Alu 2 263 -49 240 259 27 65 chr12 33589161 33589346 -110197109 + G-rich Low_complexity Low_complexity 2 179 0 225 193 0 0 chr12 33589374 33589431 -110197024 + AluSx SINE Alu 240 296 -6 288 210 120 40 chr12 33589431 33589531 -110196924 + L1M4 LINE L1 2470 2577 -3569 2195 120 3 0 chr12 33589540 33589841 -110196614 + AluSg SINE Alu 1 302 -8 300 185 0 0 chr12 33589850 33589904 -110196551 + L1M4 LINE L1 2667 2720 -3426 1923 121 3 51 chr12 33589910 33590223 -110196232 + AluSq SINE Alu 1 298 -15 687 110 63 31 chr12 33590353 33590480 -110195975 - AluSq/x SINE Alu -181 132 2 2172 85 6 31 chr12 33590685 33591004 -110195451 - AluY SINE Alu 0 311 1 2007 154 0 0 chr12 33591005 33591297 -110195158 - AluJb SINE Alu -16 296 5 892 202 6 6 chr12 33592108 33592276 -110194179 - AluJo SINE Alu -107 205 38 24 32 0 0 chr12 33592468 33592499 -110193956 + GC_rich Low_complexity Low_complexity 1 31 0 2367 63 30 0 chr12 33593260 33593559 -110192896 + AluY SINE Alu 4 311 0 2162 119 7 0 chr12 33593632 33593935 -110192520 + AluSx SINE Alu 1 305 -7 2553 37 0 7 chr12 33594778 33595077 -110191378 - AluY SINE Alu -14 297 1 691 216 0 8 chr12 33595372 33595506 -110190949 + FLAM_A SINE Alu 1 133 0 2451 69 7 7 chr12 33596375 33596681 -110189774 - AluY SINE Alu -5 306 1 526 226 0 0 chr12 33596820 33596922 -110189533 + U13 snRNA snRNA 1 102 -2 1676 181 17 0 chr12 33597016 33597309 -110189146 - AluJb SINE Alu -14 298 1 2412 81 0 3 chr12 33597969 33598277 -110188178 - AluSg SINE Alu -3 307 1 22 56 0 0 chr12 33598517 33598553 -110187902 + AT_rich Low_complexity Low_complexity 1 36 0 787 185 15 0 chr12 33599199 33599329 -110187126 + FLAM_C SINE Alu 2 133 0 26 30 0 0 chr12 33599999 33600032 -110186423 + AT_rich Low_complexity Low_complexity 1 33 0 2183 119 3 7 chr12 33600514 33600816 -110185639 + AluSx SINE Alu 1 301 -11 297 261 15 0 chr12 33600875 33600940 -110185515 - MIR3 SINE MIR -45 163 98 2092 130 0 7 chr12 33601096 33601397 -110185058 - AluSg1 SINE Alu -10 299 1 2556 59 0 7 chr12 33601467 33601774 -110184681 - AluY SINE Alu -6 305 1 2118 131 3 0 chr12 33602394 33602700 -110183755 + AluSg SINE Alu 1 307 -3 2268 119 0 0 chr12 33602702 33603004 -110183451 + AluSx SINE Alu 1 302 -10 1570 174 45 17 chr12 33603458 33603746 -110182709 + AluJo SINE Alu 1 296 -16 2566 52 0 3 chr12 33604363 33604668 -110181787 - AluY SINE Alu -7 304 1 2209 97 33 0 chr12 33605585 33605885 -110180570 + AluSp SINE Alu 1 310 -3 1997 118 13 20 chr12 33605943 33606247 -110180208 - AluSc SINE Alu -7 302 1 2148 112 3 0 chr12 33607393 33607680 -110178775 - AluSq SINE Alu -25 288 1 630 110 22 0 chr12 33607732 33607823 -110178632 - AluSg/x SINE Alu -8 302 210 1075 224 112 10 chr12 33608138 33608442 -110178013 - MER46C DNA MER2_type -3 335 1 2244 118 10 0 chr12 33609331 33609635 -110176820 + AluSq SINE Alu 1 307 -6 1911 148 13 10 chr12 33609635 33609944 -110176511 + AluSx SINE Alu 1 311 -1 285 344 42 0 chr12 33610065 33610161 -110176294 + L2 LINE L2 3173 3272 0 2148 100 0 23 chr12 33610323 33610623 -110175832 - AluSq SINE Alu -20 293 1 207 299 250 20 chr12 33610836 33611040 -110175415 + L2 LINE L2 2804 3054 -218 2058 123 3 16 chr12 33611208 33611518 -110174937 - AluSx SINE Alu -4 308 3 2118 117 10 0 chr12 33612029 33612320 -110174135 - AluSx SINE Alu -18 294 1 671 277 52 60 chr12 33612628 33612733 -110173722 + L1MEc LINE L1 1058 1162 -5234 2158 105 18 0 chr12 33612733 33613018 -110173437 + AluSc SINE Alu 1 290 -19 671 277 52 60 chr12 33613018 33613066 -110173389 + L1MEc LINE L1 1162 1209 -5187 2232 131 0 0 chr12 33613066 33613378 -110173077 + AluSx SINE Alu 1 312 0 671 277 52 60 chr12 33613378 33613763 -110172692 + L1MEc LINE L1 1209 1616 -4780 335 308 10 39 chr12 33613769 33613873 -110172582 + L1MEc LINE L1 1545 1645 -4751 1608 127 68 55 chr12 33613998 33614290 -110172165 + AluJo SINE Alu 1 296 -16 1779 168 3 3 chr12 33614627 33614912 -110171543 + AluJo SINE Alu 1 285 -27 198 0 0 0 chr12 33614912 33614934 -110171521 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 312 224 0 0 chr12 33614934 33615001 -110171454 + L1MEc LINE L1 2998 3064 -3151 416 275 55 44 chr12 33615036 33615180 -110171275 + L1MEc LINE L1 3151 3292 -2923 1756 176 0 16 chr12 33615180 33615487 -110170968 + AluJb SINE Alu 1 302 -10 416 275 55 44 chr12 33615487 33615706 -110170749 + L1MEc LINE L1 3292 3518 -2697 2132 124 10 0 chr12 33615709 33616016 -110170439 + AluSx SINE Alu 1 310 -2 649 231 99 58 chr12 33616033 33616275 -110170180 + MER21B LTR ERV1 329 580 -283 1680 144 133 32 chr12 33616329 33616609 -110169846 + MSTB1 LTR MaLR 51 374 -58 1844 159 7 3 chr12 33616609 33616767 -110169688 - AluJb SINE Alu -16 296 135 2308 93 10 0 chr12 33616767 33617069 -110169386 - AluSp SINE Alu -8 305 1 1844 159 7 3 chr12 33617069 33617205 -110169250 - AluJb SINE Alu -177 135 1 1680 144 133 32 chr12 33617205 33617271 -110169184 + MSTB1 LTR MaLR 374 432 0 447 248 174 6 chr12 33617284 33617445 -110169010 + MER21B LTR ERV1 614 801 -62 2181 186 30 2 chr12 33617450 33617849 -110168606 + MER21B-int LTR ERV1 18 427 -3764 473 229 17 8 chr12 33617857 33617975 -110168480 - MER21-int LTR ERV1 -3657 534 416 1219 154 84 22 chr12 33617975 33618202 -110168253 - AluSx SINE Alu -17 295 55 456 74 0 0 chr12 33618211 33618265 -110168190 - AluSq/x SINE Alu -193 119 66 4854 241 93 70 chr12 33618268 33618959 -110167496 + MER21B-int LTR ERV1 505 1179 -3012 2107 128 0 0 chr12 33618959 33619247 -110167208 - AluSx SINE Alu -24 288 1 4854 241 93 70 chr12 33619247 33619614 -110166841 + MER21B-int LTR ERV1 1179 1536 -2655 1765 159 7 0 chr12 33619614 33619885 -110166570 - AluJb SINE Alu -31 281 9 4854 241 93 70 chr12 33619885 33620673 -110165782 + MER21B-int LTR ERV1 1536 2394 -1797 459 287 83 33 chr12 33621638 33621819 -110164636 + MIR SINE MIR 1 190 -72 1791 180 0 3 chr12 33622129 33622424 -110164031 + AluJo SINE Alu 9 302 -10 2297 112 0 6 chr12 33622497 33622811 -110163644 + AluSx SINE Alu 1 312 0 428 313 27 80 chr12 33623066 33623290 -110163165 - MIR SINE MIR -33 229 18 994 181 11 28 chr12 33623290 33623467 -110162988 + FAM SINE Alu 2 175 0 2301 98 0 3 chr12 33623602 33623897 -110162558 + AluSg SINE Alu 1 294 -16 25 31 0 0 chr12 33624711 33624743 -110161712 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr12 33624960 33624989 -110161466 + AT_rich Low_complexity Low_complexity 1 29 0 1552 184 21 7 chr12 33625082 33625365 -110161090 + AluJb SINE Alu 5 291 -21 300 257 37 46 chr12 33627157 33627266 -110159189 + MIR SINE MIR 32 139 -69 607 275 144 45 chr12 33627940 33628466 -110157989 - L2 LINE L2 -1 3271 2711 354 293 28 9 chr12 33628733 33628839 -110157616 + L2 LINE L2 440 547 -2767 1203 222 102 177 chr12 33628858 33629230 -110157225 + L2 LINE L2 2153 2551 -762 834 181 0 0 chr12 33629230 33629363 -110157092 - FRAM SINE Alu -8 168 36 1203 222 102 177 chr12 33629363 33629778 -110156677 + L2 LINE L2 2551 3000 -313 382 281 116 0 chr12 33629782 33629903 -110156552 + MLT1G LTR MaLR 20 154 -441 * 775 209 148 5 chr12 33629901 33629999 -110156456 - MER58A DNA MER1_type -2196 224 141 9647 91 15 28 chr12 33629999 33630098 -110156357 + HSMAR1 DNA Mariner 1 100 -1187 2196 109 3 0 chr12 33630098 33630391 -110156064 - AluSg SINE Alu -14 296 3 9647 91 15 28 chr12 33630391 33630508 -110155947 + HSMAR1 DNA Mariner 100 217 -1070 2182 100 40 3 chr12 33630508 33630809 -110155646 - AluSx SINE Alu 0 312 1 9647 91 15 28 chr12 33630809 33631177 -110155278 + HSMAR1 DNA Mariner 217 588 -699 1955 122 14 4 chr12 33631177 33631494 -110154961 + AluSx SINE Alu 1 320 0 9647 91 15 28 chr12 33631494 33632208 -110154247 + HSMAR1 DNA Mariner 588 1285 -2 775 209 148 5 chr12 33632208 33632305 -110154150 - MER58A DNA MER1_type -2279 141 1 560 280 139 15 chr12 33632314 33632392 -110154063 + MLT1G LTR MaLR 110 177 -418 234 0 0 0 chr12 33632392 33632418 -110154037 + (TC)n Simple_repeat Simple_repeat 2 27 0 560 280 139 15 chr12 33632418 33632708 -110153747 + MLT1G LTR MaLR 177 547 -48 830 261 22 35 chr12 33632708 33632731 -110153724 + MER58A DNA MER1_type 1 23 -2397 1397 216 18 85 chr12 33632731 33633120 -110153335 + MLT1A1 LTR MaLR 1 363 -2 830 261 22 35 chr12 33633120 33633322 -110153133 + MER58A DNA MER1_type 23 223 -1 220 364 30 10 chr12 33633382 33633481 -110152974 + L2 LINE L2 2995 3095 -218 1910 150 6 13 chr12 33634071 33634385 -110152070 + AluSx SINE Alu 1 312 0 189 174 304 0 chr12 33634488 33634534 -110151921 + L2 LINE L2 3213 3272 0 1877 135 3 63 chr12 33634610 33634928 -110151527 - AluSx SINE Alu -11 301 3 241 328 0 0 chr12 33635741 33635799 -110150656 + Tigger3(Golem) DNA MER2_type 1 58 -2971 764 144 23 45 chr12 33635801 33635933 -110150522 + Tigger3(Golem) DNA MER2_type 2877 3005 -24 207 161 0 0 chr12 33635933 33635964 -110150491 + polypyrimidine Low_complexity Low_complexity 2 32 0 305 382 27 9 chr12 33635965 33636075 -110150380 - L2 LINE L2 -25 3247 3136 440 321 149 35 chr12 33636241 33636892 -110149563 - L2 LINE L2 -1 3312 2291 1855 169 3 0 chr12 33636985 33637281 -110149174 + AluJb SINE Alu 1 297 -15 1569 136 21 4 chr12 33637868 33638111 -110148344 + AluSx SINE Alu 43 289 -23 237 117 50 17 chr12 33638173 33638233 -110148222 + GA-rich Low_complexity Low_complexity 4 65 0 689 205 0 8 chr12 33639078 33639205 -110147250 - AluJo SINE Alu -102 210 85 206 303 131 20 chr12 33639809 33639908 -110146547 + MIR3 SINE MIR 4 113 -95 1023 104 0 0 chr12 33640067 33640201 -110146254 + AluSq/x SINE Alu 1 134 -178 2028 139 7 7 chr12 33640202 33640511 -110145944 + AluSx SINE Alu 1 309 -3 590 113 10 0 chr12 33640780 33640877 -110145578 + (TCTA)n Simple_repeat Simple_repeat 2 99 0 315 0 0 0 chr12 33640877 33640912 -110145543 + (CCTA)n Simple_repeat Simple_repeat 1 35 0 653 228 0 0 chr12 33640912 33641026 -110145429 - FLAM_A SINE Alu -23 119 6 4549 103 44 8 chr12 33641067 33641679 -110144776 + MER51A LTR ERV1 1 634 0 322 279 16 33 chr12 33641946 33642031 -110144424 + MIR SINE MIR 72 156 -106 2427 83 10 0 chr12 33642031 33642331 -110144124 - AluSx SINE Alu -9 303 1 322 279 16 33 chr12 33642331 33642367 -110144088 + MIR SINE MIR 156 191 -71 868 137 0 0 chr12 33643237 33643354 -110143101 + FLAM_C SINE Alu 1 117 -26 29 0 0 0 chr12 33643362 33643391 -110143064 + AT_rich Low_complexity Low_complexity 1 29 0 2203 102 14 0 chr12 33644313 33644608 -110141847 + AluSx SINE Alu 9 307 -5 24 0 0 0 chr12 33645166 33645190 -110141265 + AT_rich Low_complexity Low_complexity 1 24 0 2401 86 0 0 chr12 33645408 33645710 -110140745 - AluSx SINE Alu -10 302 1 929 288 152 32 chr12 33645735 33646270 -110140185 + L2 LINE L2 2726 3313 0 231 87 0 43 chr12 33646480 33646526 -110139929 + Alu SINE Alu 259 302 -1 189 0 0 0 chr12 33646822 33646843 -110139612 + (A)n Simple_repeat Simple_repeat 1 21 0 237 114 0 0 chr12 33647748 33647783 -110138672 + Alu SINE Alu 249 283 -19 2150 97 20 13 chr12 33648090 33648390 -110138065 + AluSp SINE Alu 1 302 -11 1468 210 76 34 chr12 33648486 33648814 -110137641 + MER2 DNA MER2_type 2 343 -1 345 230 42 204 chr12 33649535 33649689 -110136766 + MIR SINE MIR 1 178 -84 2261 97 0 7 chr12 33649689 33649987 -110136468 + AluSg SINE Alu 1 296 -14 345 230 42 204 chr12 33649987 33650072 -110136383 + MIR SINE MIR 178 182 -80 2211 121 0 3 chr12 33650072 33650385 -110136070 + AluSx SINE Alu 1 312 0 345 230 42 204 chr12 33650385 33650453 -110136002 + MIR SINE MIR 182 259 -3 254 247 0 56 chr12 33650879 33650968 -110135487 + CT-rich Low_complexity Low_complexity 6 89 0 1877 139 60 117 chr12 33651138 33651208 -110135247 - MSTB1 LTR MaLR 0 432 360 1632 147 17 51 chr12 33651208 33651501 -110134954 + AluJo SINE Alu 1 283 -29 1877 139 60 117 chr12 33651501 33651883 -110134572 - MSTB1 LTR MaLR -72 360 6 26 50 0 0 chr12 33653166 33653206 -110133249 + AT_rich Low_complexity Low_complexity 1 40 0 2378 224 97 47 chr12 33653669 33654213 -110132242 + L2 LINE L2 2022 2537 -776 2350 97 10 6 chr12 33654213 33654524 -110131931 - AluSx SINE Alu 0 312 1 2378 224 97 47 chr12 33654524 33655072 -110131383 + L2 LINE L2 2537 3185 -128 1857 168 45 15 chr12 33655072 33655406 -110131049 - MER2 DNA MER2_type 0 344 1 2378 224 97 47 chr12 33655406 33655540 -110130915 + L2 LINE L2 3185 3311 -2 351 270 212 61 chr12 33657275 33657704 -110128751 + L1M2 LINE L1 802 1295 -5554 28 29 0 0 chr12 33657854 33657889 -110128566 + GC_rich Low_complexity Low_complexity 1 35 0 756 163 0 52 chr12 33658633 33658768 -110127687 + FLAM_C SINE Alu 1 128 -5 21 0 0 0 chr12 33658772 33658793 -110127662 + AT_rich Low_complexity Low_complexity 1 21 0 833 126 8 31 chr12 33658793 33658920 -110127535 - FLAM_C SINE Alu -9 124 1 1104 201 18 14 chr12 33659189 33659408 -110127047 + AluJo SINE Alu 1 220 -92 349 56 19 74 chr12 33659409 33659463 -110126992 + AluSq/x SINE Alu 87 133 -170 2239 92 10 7 chr12 33659504 33659808 -110126647 + AluSc SINE Alu 1 305 -4 184 331 71 55 chr12 33659913 33660040 -110126415 + L2 LINE L2 3139 3267 -5 2161 110 16 13 chr12 33660132 33660442 -110126013 + AluSx SINE Alu 1 311 -1 606 125 0 80 chr12 33660472 33660494 -110125961 - U5 snRNA snRNA -13 103 81 2253 107 3 0 chr12 33660494 33660794 -110125661 + AluSq SINE Alu 1 301 -12 606 125 0 80 chr12 33660794 33660883 -110125572 - U5 snRNA snRNA -35 81 1 1581 147 0 19 chr12 33661906 33662164 -110124291 - AluJb SINE Alu -49 263 11 321 188 50 40 chr12 33662164 33662265 -110124190 + LTR41 LTR ERVL 656 757 -16 1631 223 53 27 chr12 33662270 33662646 -110123809 + L1ME1 LINE L1 5733 6122 -44 2445 81 0 0 chr12 33662646 33662941 -110123514 - AluSx SINE Alu -17 295 1 1631 223 53 27 chr12 33662941 33662976 -110123479 + L1ME1 LINE L1 6122 6155 -11 901 197 0 0 chr12 33662976 33663123 -110123332 + AluJb SINE Alu 134 280 -32 288 77 0 0 chr12 33663123 33663162 -110123293 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 585 299 116 9 chr12 33663390 33663614 -110122841 + MIR SINE MIR 15 262 0 348 130 0 29 chr12 33663664 33663733 -110122722 - Alu SINE Alu -1 301 235 932 198 144 18 chr12 33664046 33664096 -110122359 - MER33 DNA MER1_type -2274 311 269 2130 99 3 7 chr12 33664096 33664379 -110122076 - AluSc SINE Alu -16 293 12 932 198 144 18 chr12 33664379 33664394 -110122061 - MER33 DNA MER1_type -2316 269 257 246 32 0 0 chr12 33664394 33664425 -110122030 + (CAA)n Simple_repeat Simple_repeat 2 32 0 932 198 144 18 chr12 33664425 33664645 -110121810 - MER33 DNA MER1_type -2328 257 1 802 159 0 36 chr12 33664865 33665003 -110121452 - FLAM_A SINE Alu 0 133 1 386 349 160 12 chr12 33665310 33665769 -110120686 + L2 LINE L2 2565 3087 -185 1381 165 43 18 chr12 33666010 33666289 -110120166 - AluJb SINE Alu -26 286 1 2114 141 0 13 chr12 33666601 33666914 -110119541 - AluSx SINE Alu -3 309 1 583 179 0 0 chr12 33667171 33667266 -110119189 + L1MB5 LINE L1 6080 6174 0 198 0 0 0 chr12 33667593 33667615 -110118840 + (T)n Simple_repeat Simple_repeat 1 22 0 470 250 83 23 chr12 33667772 33667904 -110118551 + MLT1H LTR MaLR 101 240 -309 2094 106 0 11 chr12 33667922 33668204 -110118251 + AluSx SINE Alu 1 279 -33 198 174 0 0 chr12 33668238 33668284 -110118171 + A-rich Low_complexity Low_complexity 1 46 0 1847 233 119 8 chr12 33668486 33669083 -110117372 + L1MC4 LINE L1 5343 6005 -2037 * 2321 173 69 12 chr12 33668743 33669251 -110117204 + L1MB8 LINE L1 5642 6178 0 1621 186 3 10 chr12 33669261 33669552 -110116903 + AluJb SINE Alu 1 289 -23 1745 148 18 0 chr12 33670148 33670425 -110116030 + L1MD3 LINE L1 7697 7978 -17 936 275 153 43 chr12 33670486 33671049 -110115406 - L2 LINE L2 0 3313 2690 2332 99 0 0 chr12 33671049 33671343 -110115112 + AluSg SINE Alu 1 294 -16 936 275 153 43 chr12 33671343 33671373 -110115082 - L2 LINE L2 -623 2690 2665 622 271 48 39 chr12 33671378 33671607 -110114848 + L1MC4 LINE L1 7443 7673 -369 1419 208 145 28 chr12 33671615 33672042 -110114413 - MLT1D LTR MaLR 0 505 29 1136 260 92 52 chr12 33672042 33672431 -110114024 - L2 LINE L2 -701 2613 2204 2276 93 6 6 chr12 33672431 33672742 -110113713 + AluSq SINE Alu 1 311 -2 1136 260 92 52 chr12 33672742 33672775 -110113680 - L2 LINE L2 -1110 2204 2174 894 114 76 0 chr12 33673104 33673235 -110113220 + AluJb SINE Alu 1 141 -171 47 0 0 0 chr12 33673252 33673299 -110113156 + AT_rich Low_complexity Low_complexity 1 47 0 2401 86 0 0 chr12 33673642 33673944 -110112511 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr12 33674162 33674186 -110112269 + AT_rich Low_complexity Low_complexity 1 24 0 2270 99 13 0 chr12 33674744 33675047 -110111408 - AluSx SINE Alu -5 307 1 239 290 29 82 chr12 33675480 33675687 -110110768 - L2 LINE L2 -1 3312 3117 367 327 103 49 chr12 33676043 33676392 -110110063 - L2 LINE L2 -609 2705 2338 464 242 96 35 chr12 33676733 33676931 -110109524 - MER2 DNA MER2_type 0 345 136 1834 94 0 80 chr12 33677708 33677996 -110108459 - AluSx SINE Alu -12 300 36 1290 123 0 0 chr12 33678475 33678654 -110107801 + AluSg/x SINE Alu 131 309 -1 14895 135 40 34 chr12 33678851 33678960 -110107495 + L1MA3 LINE L1 1666 1773 -5951 330 87 0 0 chr12 33678960 33679006 -110107449 + (CA)n Simple_repeat Simple_repeat 2 47 0 14895 135 40 34 chr12 33679006 33679396 -110107059 + L1MA3 LINE L1 1773 2159 -5565 2630 135 41 12 chr12 33679396 33679812 -110106643 + MSTA LTR MaLR 1 428 0 14895 135 40 34 chr12 33679812 33682135 -110104320 + L1MA3 LINE L1 2159 4468 -3256 2195 125 0 6 chr12 33682135 33682446 -110104009 + AluSx SINE Alu 1 309 -3 14895 135 40 34 chr12 33682446 33683922 -110102533 + L1MA3 LINE L1 4468 5935 -1789 1936 146 0 0 chr12 33683922 33684202 -110102253 + AluSx SINE Alu 1 280 -32 14895 135 40 34 chr12 33684202 33685556 -110100899 + L1MA3 LINE L1 5935 7371 -353 2380 90 0 7 chr12 33685556 33685856 -110100599 + AluSg SINE Alu 1 298 -12 14895 135 40 34 chr12 33685856 33686211 -110100244 + L1MA3 LINE L1 7371 7723 -1 1610 177 3 11 chr12 33686228 33686511 -110099944 + AluJb SINE Alu 5 285 -27 1095 151 0 49 chr12 33686580 33686765 -110099690 + AluJb SINE Alu 113 288 -24 2039 121 21 0 chr12 33687439 33687719 -110098736 + AluSx SINE Alu 1 286 -26 21 104 0 0 chr12 33687729 33687806 -110098649 + AT_rich Low_complexity Low_complexity 1 77 0 1854 162 0 10 chr12 33687840 33688136 -110098319 - AluJb SINE Alu -19 293 1 324 248 51 29 chr12 33688163 33688300 -110098155 + L1ME4a LINE L1 5093 5232 -914 414 236 60 51 chr12 33688303 33688578 -110097877 + L1MC5 LINE L1 7261 7498 -463 1682 136 31 8 chr12 33688785 33689043 -110097412 - L1PA16 LINE L1 -2 6164 5901 372 268 106 68 chr12 33689073 33689223 -110097232 + L1ME4a LINE L1 5751 5894 -227 1713 160 30 20 chr12 33689223 33689523 -110096932 + AluJb SINE Alu 1 303 -9 372 268 106 68 chr12 33689523 33689693 -110096762 + L1ME4a LINE L1 5894 6083 -38 2258 98 3 0 chr12 33689956 33690243 -110096212 + AluSx SINE Alu 1 288 -24 397 265 0 80 chr12 33690771 33690922 -110095533 - L1MC5 LINE L1 -72 7889 7751 2126 117 21 0 chr12 33690955 33691246 -110095209 - AluSg SINE Alu -13 297 1 2199 107 3 3 chr12 33691259 33691557 -110094898 - AluSq SINE Alu -15 298 1 25 0 0 0 chr12 33691604 33691629 -110094826 + AT_rich Low_complexity Low_complexity 1 25 0 1722 174 33 10 chr12 33691661 33691966 -110094489 + AluJb SINE Alu 1 312 0 1714 166 3 20 chr12 33692450 33692751 -110093704 - AluJo SINE Alu -16 296 1 2409 102 5 18 chr12 33693218 33693742 -110092713 - L1PA10 LINE L1 0 6168 5570 45355 34 5 2 chr12 33693755 33699894 -110086561 - L1PA4 LINE L1 -3 6152 1 2042 139 10 0 chr12 33699895 33700190 -110086265 - AluSx SINE Alu -14 298 1 456 114 0 102 chr12 33700285 33700373 -110086082 + FLAM_A SINE Alu 62 140 -2 469 281 76 63 chr12 33700511 33701046 -110085409 + HAL1b LINE L1 1193 1346 -2 1583 131 0 13 chr12 33701066 33701295 -110085160 - AluJb SINE Alu -11 301 76 207 0 0 0 chr12 33701503 33701526 -110084929 + (A)n Simple_repeat Simple_repeat 1 23 0 799 167 97 14 chr12 33701605 33701749 -110084706 + FRAM SINE Alu 1 156 -10 2391 234 93 52 chr12 33703681 33704621 -110081834 + L2 LINE L2 2111 3088 -225 787 211 0 0 chr12 33705034 33705167 -110081288 + FLAM_A SINE Alu 1 133 0 272 193 70 0 chr12 33705403 33705460 -110080995 - L2 LINE L2 -4 3268 3208 281 236 11 45 chr12 33705604 33705693 -110080762 - L2 LINE L2 -2 3311 3226 22 0 0 0 chr12 33705996 33706018 -110080437 + AT_rich Low_complexity Low_complexity 1 22 0 1990 105 3 18 chr12 33706019 33706305 -110080150 + AluSp SINE Alu 1 282 -31 252 59 0 0 chr12 33706309 33706343 -110080112 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr12 33707341 33707365 -110079090 + AT_rich Low_complexity Low_complexity 1 24 0 1982 161 0 3 chr12 33707526 33707825 -110078630 + AluSx SINE Alu 1 298 -14 1499 182 0 25 chr12 33708254 33708577 -110077878 - AluJb SINE Alu 0 327 12 381 164 16 0 chr12 33708735 33708796 -110077659 + MLT1F LTR MaLR 1 62 -480 1242 183 62 5 chr12 33708827 33709051 -110077404 + AluJb SINE Alu 1 237 -75 278 258 106 68 chr12 33709400 33709532 -110076923 + MIR SINE MIR 15 146 -62 1732 172 0 23 chr12 33709562 33709865 -110076590 + AluJb SINE Alu 1 296 -16 1054 201 0 0 chr12 33709876 33710040 -110076415 + FAM SINE Alu 1 164 -11 297 0 0 0 chr12 33710041 33710074 -110076381 + (TG)n Simple_repeat Simple_repeat 2 34 0 751 167 0 0 chr12 33710190 33710310 -110076145 + FLAM_C SINE Alu 2 121 -22 26 30 0 0 chr12 33710310 33710343 -110076112 + AT_rich Low_complexity Low_complexity 1 33 0 535 196 0 0 chr12 33710575 33710667 -110075788 + AluSc SINE Alu 128 219 -90 612 152 0 19 chr12 33710735 33710840 -110075615 + MER65A LTR ERV1 343 445 0 1088 163 0 0 chr12 33710870 33711036 -110075419 + AluJb SINE Alu 133 298 -14 710 79 0 0 chr12 33711160 33711249 -110075206 + AluSg/x SINE Alu 211 299 -10 324 339 0 16 chr12 33711249 33711376 -110075079 + L2 LINE L2 2623 2747 -567 928 161 0 25 chr12 33711376 33711537 -110074918 + FRAM SINE Alu 10 166 -10 821 127 8 45 chr12 33711571 33711705 -110074750 - FLAM_C SINE Alu -13 130 2 1998 132 132 0 chr12 33711764 33712083 -110074372 + MER46B DNA MER2_type 1 236 0 734 172 8 39 chr12 33712627 33712755 -110073700 - FLAM_A SINE Alu -9 124 1 1795 159 20 10 chr12 33712763 33713065 -110073390 - AluJb SINE Alu -7 305 1 1017 160 11 17 chr12 33714252 33714427 -110072028 + FAM SINE Alu 1 174 -1 1771 153 7 17 chr12 33714427 33714715 -110071740 + AluJb SINE Alu 6 290 -22 33 54 0 0 chr12 33714715 33714752 -110071703 + AT_rich Low_complexity Low_complexity 1 37 0 793 81 0 113 chr12 33715008 33715168 -110071287 + AluSg/x SINE Alu 163 304 -6 1732 146 19 41 chr12 33716229 33716545 -110069910 + AluSx SINE Alu 1 309 -3 1090 185 0 0 chr12 33716546 33716719 -110069736 + AluJb SINE Alu 134 306 -6 1990 122 0 20 chr12 33716722 33717018 -110069437 + AluSx SINE Alu 1 290 -22 244 138 0 35 chr12 33717029 33717087 -110069368 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 1735 148 10 61 chr12 33717155 33717465 -110068990 + AluJo SINE Alu 1 294 -18 24 67 0 0 chr12 33717933 33717978 -110068477 + AT_rich Low_complexity Low_complexity 1 45 0 2636 52 0 3 chr12 33717983 33718291 -110068164 + AluY SINE Alu 1 307 -4 1869 164 0 10 chr12 33718396 33718706 -110067749 + AluJb SINE Alu 1 307 -5 326 234 211 0 chr12 33719355 33719483 -110066972 + MIR SINE MIR 32 186 -76 1866 145 16 7 chr12 33719934 33720193 -110066262 + AluSx SINE Alu 1 265 -47 210 37 0 0 chr12 33720193 33720220 -110066235 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1866 145 16 7 chr12 33720220 33720264 -110066191 + AluSx SINE Alu 265 307 -5 379 174 11 11 chr12 33720264 33720356 -110066099 + GA-rich Low_complexity Low_complexity 3 94 0 31 0 0 0 chr12 33720513 33720544 -110065911 + AT_rich Low_complexity Low_complexity 1 31 0 2012 153 0 6 chr12 33721035 33721349 -110065106 - AluSx SINE Alu 0 312 1 1681 160 28 25 chr12 33721378 33721660 -110064795 + AluJb SINE Alu 1 283 -29 596 182 8 46 chr12 33722174 33722434 -110064021 + G-rich Low_complexity Low_complexity 1 250 0 207 200 0 0 chr12 33722441 33722476 -110063979 + A-rich Low_complexity Low_complexity 3 37 0 485 102 0 102 chr12 33722477 33722664 -110063791 + (GGGGA)n Simple_repeat Simple_repeat 1 168 0 183 80 0 0 chr12 33722674 33722699 -110063756 + (GAAAA)n Simple_repeat Simple_repeat 5 29 0 2246 125 0 0 chr12 33723383 33723688 -110062767 + AluSx SINE Alu 1 305 -7 1135 132 198 5 chr12 33724700 33724897 -110061558 - MER46A DNA MER2_type 0 236 2 476 164 14 0 chr12 33724967 33725040 -110061415 - MER46A DNA MER2_type -161 75 2 321 190 0 17 chr12 33724993 33725051 -110061404 + MER46A DNA MER2_type 97 153 -83 * 2041 157 7 0 chr12 33725090 33725396 -110061059 + AluSx SINE Alu 1 308 -4 968 212 11 0 chr12 33725406 33725585 -110060870 + L1MC/D LINE L1 5444 5624 -2161 * 1730 146 81 68 chr12 33725568 33725776 -110060679 + L1MC3 LINE L1 7339 7543 -242 2728 116 16 3 chr12 33725776 33726146 -110060309 + THE1C LTR MaLR 1 375 0 1730 146 81 68 chr12 33726146 33726182 -110060273 + L1MC3 LINE L1 7543 7577 -208 2312 109 3 0 chr12 33726182 33726493 -110059962 + AluSq SINE Alu 1 312 -1 1730 146 81 68 chr12 33726493 33726657 -110059798 + L1MC3 LINE L1 7577 7753 -32 2383 86 7 0 chr12 33726726 33727029 -110059426 + AluSg SINE Alu 2 306 -4 1809 157 32 0 chr12 33727968 33728249 -110058206 + AluJb SINE Alu 1 290 -22 453 267 184 24 chr12 33729485 33729765 -110056690 + MLT1J1 LTR MaLR 99 428 -18 2107 128 10 3 chr12 33729931 33730228 -110056227 - AluSx SINE Alu -13 299 1 198 0 0 0 chr12 33730511 33730533 -110055922 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1670 171 11 18 chr12 33730534 33730820 -110055635 - AluJb SINE Alu -23 289 6 29 0 0 0 chr12 33730966 33730995 -110055460 + AT_rich Low_complexity Low_complexity 1 29 0 831 69 0 0 chr12 33730995 33731096 -110055359 - HY3 scRNA scRNA 0 101 1 1586 273 83 57 chr12 33731171 33731871 -110054584 - MER21B LTR ERV1 -129 734 17 936 210 194 24 chr12 33731874 33732126 -110054329 - AluJo SINE Alu -7 295 1 207 299 37 52 chr12 33733829 33733963 -110052492 + L2 LINE L2 2264 2395 -919 359 178 0 0 chr12 33734024 33734083 -110052372 + Alu SINE Alu 1 53 -248 667 200 82 7 chr12 33734113 33734248 -110052207 + FRAM SINE Alu 20 164 -12 341 186 0 29 chr12 33734255 33734325 -110052130 + MLT1G1 LTR MaLR 486 593 -2 508 256 111 56 chr12 33734327 33734561 -110051894 - L2 LINE L2 -71 3242 2996 754 241 21 21 chr12 33734802 33734989 -110051466 - MLT1E2 LTR MaLR 0 654 468 1132 148 0 0 chr12 33735004 33735173 -110051282 - AluSg/x SINE Alu -10 300 132 1137 224 111 28 chr12 33735173 33735582 -110050873 - MLT1E2 LTR MaLR -185 439 1 1825 131 3 34 chr12 33735639 33735930 -110050525 + AluJo SINE Alu 1 282 -30 229 230 176 54 chr12 33736377 33736451 -110050004 + L2 LINE L2 3190 3272 0 22 56 0 0 chr12 33736560 33736596 -110049859 + AT_rich Low_complexity Low_complexity 1 36 0 2314 83 24 0 chr12 33736613 33736901 -110049554 - AluSg SINE Alu -10 300 6 1560 179 0 58 chr12 33736915 33737223 -110049232 - AluJo SINE Alu -22 290 1 3786 136 156 113 chr12 33737450 33738023 -110048432 - L1MC3 LINE L1 0 7785 7238 231 319 0 32 chr12 33738023 33738117 -110048338 - MLT1F1 LTR MaLR -442 125 35 3786 136 156 113 chr12 33738117 33738530 -110047925 - L1MC3 LINE L1 -547 7238 6656 1879 149 0 33 chr12 33738530 33738831 -110047624 - AluJo SINE Alu -15 297 7 807 224 0 7 chr12 33738924 33739076 -110047379 + Tigger3(Golem) DNA MER2_type 2866 3016 -13 2106 119 3 23 chr12 33739225 33739528 -110046927 + AluSx SINE Alu 1 297 -15 1506 174 60 28 chr12 33739543 33739825 -110046630 + AluJo SINE Alu 3 293 -19 989 187 0 0 chr12 33739850 33740000 -110046455 + FRAM SINE Alu 1 150 -16 21 82 0 0 chr12 33740029 33740078 -110046377 + AT_rich Low_complexity Low_complexity 1 49 0 1693 163 30 20 chr12 33740894 33741189 -110045266 + AluJb SINE Alu 5 302 -10 915 179 0 34 chr12 33741472 33741651 -110044804 + AluJb SINE Alu 129 301 -11 290 267 91 79 chr12 33742946 33743111 -110043344 - MIR3 SINE MIR -11 197 31 1083 105 23 18 chr12 33744465 33744636 -110041819 - L1MB7 LINE L1 0 6184 6013 1693 169 26 7 chr12 33745256 33745558 -110040897 + AluJb SINE Alu 2 309 -3 741 205 8 0 chr12 33745558 33745680 -110040775 + AluJb SINE Alu 134 256 -56 348 130 0 29 chr12 33746076 33746145 -110040310 + AluJb SINE Alu 235 301 -1 585 299 116 9 chr12 33746195 33746419 -110040036 - MIR SINE MIR 0 262 15 288 77 0 0 chr12 33746647 33746686 -110039769 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 901 197 0 0 chr12 33746686 33746833 -110039622 - AluJb SINE Alu -32 280 134 1631 223 53 27 chr12 33746833 33746868 -110039587 - L1ME1 LINE L1 -11 6155 6122 2445 81 0 0 chr12 33746868 33747163 -110039292 + AluSx SINE Alu 1 295 -17 1631 223 53 27 chr12 33747163 33747539 -110038916 - L1ME1 LINE L1 -44 6122 5733 321 188 50 40 chr12 33747544 33747645 -110038810 - LTR41 LTR ERVL -16 757 656 1581 147 0 19 chr12 33747645 33747903 -110038552 + AluJb SINE Alu 11 263 -49 595 111 0 0 chr12 33748926 33749007 -110037448 + U5 snRNA snRNA 1 81 -35 2170 117 0 7 chr12 33749015 33749314 -110037141 - AluSc SINE Alu -12 297 1 12090 144 25 31 chr12 33749314 33750665 -110035790 - L1MA3 LINE L1 -354 5951 4593 1936 146 0 0 chr12 33750665 33750945 -110035510 - AluSx SINE Alu -32 280 1 12090 144 25 31 chr12 33750945 33752420 -110034035 - L1MA3 LINE L1 -1712 4593 3059 2195 125 0 6 chr12 33752420 33752731 -110033724 - AluSx SINE Alu -3 309 1 12090 144 25 31 chr12 33752731 33753160 -110033295 - L1MA3 LINE L1 -3246 3059 2629 1998 206 19 45 chr12 33753575 33754046 -110032409 - MLT1C LTR MaLR -3 464 6 2058 131 3 3 chr12 33754141 33754431 -110032024 - AluSx SINE Alu -18 294 5 231 278 28 9 chr12 33754517 33754625 -110031830 + L1MC4 LINE L1 7933 8042 0 773 186 0 0 chr12 33755426 33755550 -110030905 - AluJ SINE Alu -1 311 188 1371 33 0 0 chr12 33755587 33755738 -110030717 - L1PA3 LINE L1 -3 6152 6002 2495 72 7 3 chr12 33755741 33756283 -110030172 - LTR10E LTR ERV1 -12 621 1 1185 176 0 0 chr12 33756285 33756473 -110029982 - AluJ SINE Alu -120 192 5 21 57 0 0 chr12 33756533 33756568 -110029887 + AT_rich Low_complexity Low_complexity 1 35 0 669 202 17 0 chr12 33756568 33756687 -110029768 - FLAM_C SINE Alu -11 122 2 2384 183 36 5 chr12 33756869 33757290 -110029165 - Tigger2a DNA MER2_type 0 434 1 2420 89 0 16 chr12 33757319 33757634 -110028821 - AluSq SINE Alu -3 310 1 736 164 9 0 chr12 33757634 33757750 -110028705 - FLAM_A SINE Alu -12 130 14 628 188 0 62 chr12 33757783 33757911 -110028544 + FLAM_C SINE Alu 10 129 -14 1041 151 6 18 chr12 33757945 33758111 -110028344 + AluSx SINE Alu 1 164 -148 2166 169 22 14 chr12 33759305 33759667 -110026788 + MLT1A1 LTR MaLR 1 365 0 1378 222 67 0 chr12 33759802 33759919 -110026536 + AluJb SINE Alu 1 109 -203 282 29 0 0 chr12 33759919 33759954 -110026501 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 1378 222 67 0 chr12 33759954 33760120 -110026335 + AluJb SINE Alu 109 303 -9 1244 122 0 0 chr12 33760146 33760318 -110026137 + AluSx SINE Alu 140 311 -1 944 181 6 17 chr12 33760595 33760772 -110025683 - FRAM SINE Alu -5 171 1 264 179 128 39 chr12 33760849 33760927 -110025528 + L2 LINE L2 3229 3313 0 1055 164 0 0 chr12 33761242 33761407 -110025048 - FRAM SINE Alu -2 174 10 324 339 0 16 chr12 33761407 33761534 -110024921 - L2 LINE L2 -567 2747 2623 710 79 0 0 chr12 33761534 33761623 -110024832 - AluSx SINE Alu -10 302 214 1088 163 0 0 chr12 33761747 33761913 -110024542 - AluJb SINE Alu -14 298 133 586 154 10 19 chr12 33761944 33762048 -110024407 - MER65A LTR ERV1 0 445 343 299 213 53 75 chr12 33762116 33762210 -110024245 - AluSx SINE Alu -81 219 128 1095 128 7 0 chr12 33763019 33763168 -110023287 - AluSx SINE Alu -162 150 1 35 24 0 0 chr12 33763177 33763219 -110023236 + AT_rich Low_complexity Low_complexity 1 42 0 2323 82 7 7 chr12 33763219 33763524 -110022931 - AluY SINE Alu -6 305 1 645 297 87 45 chr12 33763606 33763963 -110022492 - MLT1K LTR MaLR -18 570 199 1685 162 13 10 chr12 33764461 33764770 -110021685 - AluSx SINE Alu -2 310 1 24 0 0 0 chr12 33764817 33764841 -110021614 + AT_rich Low_complexity Low_complexity 1 24 0 1469 184 43 16 chr12 33764874 33765178 -110021277 + AluJb SINE Alu 1 312 0 958 263 4 23 chr12 33765677 33765936 -110020519 - AluJo SINE Alu -31 281 28 290 296 19 105 chr12 33766233 33766309 -110020146 + MIR SINE MIR 73 129 -133 2261 97 0 7 chr12 33766309 33766607 -110019848 + AluSg SINE Alu 1 296 -14 290 296 19 105 chr12 33766607 33766692 -110019763 + MIR SINE MIR 129 220 -42 2191 107 3 3 chr12 33766692 33766990 -110019465 + AluSq SINE Alu 1 298 -15 2126 117 21 0 chr12 33767003 33767294 -110019161 + AluSg SINE Alu 1 297 -13 397 265 0 80 chr12 33767327 33767478 -110018977 + L1MC5 LINE L1 7751 7889 -72 22 0 0 0 chr12 33768086 33768108 -110018347 + GC_rich Low_complexity Low_complexity 1 22 0 253 279 25 13 chr12 33768235 33768314 -110018141 - L2 LINE L2 -670 2644 2565 802 159 0 36 chr12 33768621 33768759 -110017696 + FLAM_A SINE Alu 1 133 0 575 211 163 13 chr12 33768979 33769159 -110017296 + MER33 DNA MER1_type 1 195 -80 263 238 41 25 chr12 33769247 33769369 -110017086 + AluYb8 SINE Alu 18 141 -167 2150 98 0 7 chr12 33769501 33769810 -110016645 - AluSq SINE Alu 0 307 1 23 0 0 0 chr12 33770464 33770487 -110015968 + AT_rich Low_complexity Low_complexity 1 23 0 2276 116 0 0 chr12 33770536 33770837 -110015618 - AluSq SINE Alu -12 301 1 1380 143 0 14 chr12 33771065 33771281 -110015174 - AluJo SINE Alu -95 217 5 358 226 24 0 chr12 33771400 33771484 -110014971 + MER103 DNA DNA 17 102 -64 1849 189 54 76 chr12 33771562 33772113 -110014342 - LTR55 LTR ERV -2 546 8 2118 139 3 0 chr12 33772269 33772570 -110013885 - AluSx SINE Alu -10 302 1 238 241 74 0 chr12 33772636 33772690 -110013765 + Charlie1 DNA MER1_type 1 58 -2703 * 2645 171 44 50 chr12 33772687 33772751 -110013704 + Charlie1 DNA MER1_type 1748 1811 -950 2575 96 30 30 chr12 33772751 33773115 -110013340 + THE1B LTR MaLR 1 364 0 2645 171 44 50 chr12 33773115 33773635 -110012820 + Charlie1 DNA MER1_type 1811 2329 -432 380 141 153 129 chr12 33773669 33773783 -110012672 + Charlie1 DNA MER1_type 2582 2703 -58 2339 84 0 3 chr12 33773783 33774081 -110012374 - AluY SINE Alu -14 297 1 380 141 153 129 chr12 33774081 33774136 -110012319 + Charlie1 DNA MER1_type 2703 2755 -6 1327 196 14 17 chr12 33774342 33774638 -110011817 - AluSx SINE Alu -17 295 1 1218 121 79 47 chr12 33775041 33775214 -110011241 - Tigger4(Zombi) DNA MER2_type 0 2731 2548 1538 190 0 70 chr12 33775214 33775394 -110011061 - AluJb SINE Alu -4 308 160 1931 155 3 7 chr12 33775394 33775698 -110010757 - AluSx SINE Alu -9 303 1 1538 190 0 70 chr12 33775698 33775848 -110010607 - AluJb SINE Alu -152 160 1 1218 121 79 47 chr12 33775848 33775889 -110010566 - Tigger4(Zombi) DNA MER2_type -183 2548 2510 1531 207 8 4 chr12 33775891 33776157 -110010298 - Tigger4(Zombi) DNA MER2_type -2463 268 2 234 295 39 0 chr12 33776159 33776237 -110010218 - MLT1G LTR MaLR -58 491 411 548 192 186 21 chr12 33776336 33776606 -110009849 - MLT1G LTR MaLR -284 306 1 2354 101 0 0 chr12 33776614 33776911 -110009544 - AluSx SINE Alu -15 297 1 381 278 185 29 chr12 33776948 33777294 -110009161 + L1ME4a LINE L1 5656 6055 -66 1078 0 98 0 chr12 33777612 33777734 -110008721 + AluY SINE Alu 1 134 -177 2041 146 7 0 chr12 33777734 33778036 -110008419 + AluSx SINE Alu 1 304 -8 1064 188 81 104 chr12 33778036 33778155 -110008300 - LTR54 LTR ERV1 -38 472 352 1946 144 0 19 chr12 33778155 33778468 -110007987 + AluSx SINE Alu 1 307 -5 1064 188 81 104 chr12 33778468 33778683 -110007772 - LTR54 LTR ERV1 -158 352 146 3240 145 32 0 chr12 33778768 33779264 -110007191 + MER41E LTR ERV1 1 512 0 761 156 28 14 chr12 33779268 33779409 -110007046 - LTR54 LTR ERV1 -367 143 1 187 264 44 77 chr12 33779453 33779544 -110006911 - MIR SINE MIR -12 250 163 454 56 169 0 chr12 33779555 33779626 -110006829 - MER21A LTR ERV1 -27 904 822 865 185 17 29 chr12 33779629 33779802 -110006653 + AluJb SINE Alu 119 289 -23 1301 165 91 8 chr12 33779859 33780102 -110006353 - MER21B LTR ERV1 -138 725 463 873 145 8 0 chr12 33780103 33780234 -110006221 + AluSg/x SINE Alu 146 277 -33 192 77 0 0 chr12 33780234 33780260 -110006195 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 2220 102 0 0 chr12 33780261 33780545 -110005910 + AluSc SINE Alu 1 284 -25 2525 162 73 7 chr12 33780552 33780991 -110005464 - MER21B LTR ERV1 -395 468 1 186 143 0 0 chr12 33781020 33781048 -110005407 - MIR SINE MIR -63 145 118 189 0 0 0 chr12 33782515 33782536 -110003919 + (T)n Simple_repeat Simple_repeat 1 21 0 368 264 22 0 chr12 33784425 33784516 -110001939 - MIR SINE MIR -169 93 1 772 98 46 23 chr12 33784533 33784706 -110001749 + CT-rich Low_complexity Low_complexity 2 178 0 1572 140 15 143 chr12 33784720 33784945 -110001510 - AluJo SINE Alu -3 299 131 2476 87 0 0 chr12 33784945 33785256 -110001199 - AluY SINE Alu 0 311 1 1572 140 15 143 chr12 33785256 33785372 -110001083 - AluJo SINE Alu -171 131 2 629 237 98 48 chr12 33785689 33785936 -110000519 + MLT1H1 LTR MaLR 42 281 -261 770 144 72 50 chr12 33786435 33786574 -109999881 - FLAM_C SINE Alu 0 143 2 2239 123 0 0 chr12 33786752 33787053 -109999402 - AluSx SINE Alu -11 301 1 35 24 0 0 chr12 33787062 33787104 -109999351 + AT_rich Low_complexity Low_complexity 1 42 0 2411 88 0 0 chr12 33787104 33787409 -109999046 - AluY SINE Alu -6 305 1 2110 136 3 7 chr12 33787411 33787720 -109998735 - AluSx SINE Alu 0 312 5 370 191 11 157 chr12 33787730 33787908 -109998547 + L1MC5 LINE L1 7765 7916 -45 773 186 0 0 chr12 33788715 33788839 -109997616 - AluJ SINE Alu -1 311 188 1371 33 0 0 chr12 33788876 33789027 -109997428 - L1PA3 LINE L1 -3 6152 6002 2536 72 6 3 chr12 33789030 33789572 -109996883 - LTR10E LTR ERV1 -12 621 1 1185 176 0 0 chr12 33789574 33789762 -109996693 - AluJ SINE Alu -120 192 5 21 57 0 0 chr12 33789822 33789857 -109996598 + AT_rich Low_complexity Low_complexity 1 35 0 669 202 17 0 chr12 33789857 33789976 -109996479 - FLAM_C SINE Alu -11 122 2 2384 183 36 5 chr12 33790158 33790579 -109995876 - Tigger2a DNA MER2_type 0 434 1 2420 89 0 16 chr12 33790608 33790923 -109995532 - AluSq SINE Alu -3 310 1 736 164 9 0 chr12 33790923 33791039 -109995416 - FLAM_A SINE Alu -12 130 14 628 188 0 62 chr12 33791072 33791200 -109995255 + FLAM_C SINE Alu 10 129 -14 416 134 0 16 chr12 33791234 33791473 -109994982 + AluSx SINE Alu 1 308 -1 565 144 63 0 chr12 33791503 33791614 -109994841 + L1MA8 LINE L1 6174 6291 0 2195 167 25 11 chr12 33792636 33792996 -109993459 + MLT1A1 LTR MaLR 1 365 0 1382 223 66 0 chr12 33793131 33793248 -109993207 + AluJb SINE Alu 1 109 -203 282 29 0 0 chr12 33793248 33793283 -109993172 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 1382 223 66 0 chr12 33793283 33793452 -109993003 + AluJb SINE Alu 109 306 -6 1214 134 0 0 chr12 33793475 33793647 -109992808 + AluSg/x SINE Alu 138 309 -1 944 181 6 17 chr12 33793924 33794101 -109992354 - AluJ SINE Alu -5 307 133 264 179 128 39 chr12 33794178 33794256 -109992199 + L2 LINE L2 3229 3313 0 2195 135 0 6 chr12 33794571 33794883 -109991572 - AluSx SINE Alu -2 310 1 39 0 0 0 chr12 33795004 33795043 -109991412 + AT_rich Low_complexity Low_complexity 1 39 0 781 176 48 0 chr12 33795044 33795169 -109991286 - AluJ SINE Alu -181 131 1 355 265 93 12 chr12 33795181 33795343 -109991112 - L1MC/D LINE L1 -2048 5760 5586 2083 128 3 3 chr12 33795459 33795765 -109990690 + AluSg SINE Alu 1 306 -4 207 299 250 20 chr12 33795933 33796137 -109990318 - L2 LINE L2 -218 3054 2804 2091 126 3 3 chr12 33796350 33796644 -109989811 + AluSx SINE Alu 1 294 -18 2002 204 19 45 chr12 33796739 33797210 -109989245 + MLT1C LTR MaLR 6 464 -3 338 0 24 0 chr12 33797531 33797573 -109988882 + (TTG)n Simple_repeat Simple_repeat 2 44 0 854 138 0 0 chr12 33797581 33797697 -109988758 - FLAM_C SINE Alu -26 117 2 2300 117 3 0 chr12 33797838 33798146 -109988309 + AluSx SINE Alu 1 309 -3 563 319 81 39 chr12 33798645 33799002 -109987453 + MLT1K LTR MaLR 199 570 -18 2524 66 0 0 chr12 33799084 33799385 -109987070 + AluY SINE Alu 1 301 -10 798 269 105 61 chr12 33799672 33800178 -109986277 - MLT1K LTR MaLR -4 584 57 2280 105 0 0 chr12 33800275 33800569 -109985886 + AluSx SINE Alu 1 294 -18 2205 130 55 0 chr12 33800670 33801015 -109985440 - THE1B LTR MaLR 0 364 1 248 208 0 56 chr12 33801278 33801350 -109985105 + MIR3 SINE MIR 133 200 -8 2392 79 7 3 chr12 33801689 33801993 -109984462 + AluSq SINE Alu 6 310 -3 2230 94 3 29 chr12 33802500 33802809 -109983646 - AluSq SINE Alu -12 301 1 453 123 0 0 chr12 33803068 33803133 -109983322 + MER92B LTR ERV1 1 65 -571 2040 52 0 12 chr12 33803136 33803384 -109983071 + AluY SINE Alu 57 301 -10 2248 99 6 13 chr12 33803395 33803742 -109982713 + AluSx SINE Alu 1 345 0 2018 209 87 27 chr12 33803742 33804292 -109982163 + MER92B LTR ERV1 54 636 0 751 293 35 4 chr12 33804470 33804702 -109981753 - MIR SINE MIR -18 244 6 355 228 105 18 chr12 33804842 33804956 -109981499 + MER34B LTR ERV1 1 124 -441 2955 93 42 9 chr12 33805051 33805096 -109981359 - MLT2A1 LTR ERVL 0 444 402 672 99 0 0 chr12 33805096 33805207 -109981248 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 2955 93 42 9 chr12 33805207 33805591 -109980864 - MLT2A1 LTR ERVL -42 402 1 521 266 35 56 chr12 33805591 33805877 -109980578 + MER34B LTR ERV1 286 565 0 1197 249 61 32 chr12 33805878 33806288 -109980167 + MER90 LTR ERV1 106 527 -87 2302 97 13 3 chr12 33806494 33806803 -109979652 - AluSx SINE Alu 0 312 1 780 169 0 0 chr12 33807162 33807292 -109979163 + FRAM SINE Alu 38 167 -9 2468 78 44 0 chr12 33807292 33807636 -109978819 + L1PA11 LINE L1 5814 6172 -2 2239 114 3 0 chr12 33807636 33807934 -109978521 + AluSq SINE Alu 1 299 -14 434 132 44 0 chr12 33807937 33808005 -109978450 - MLT1A2 LTR MaLR -303 71 1 1482 154 4 11 chr12 33808029 33808295 -109978160 - L1MA6 LINE L1 0 6300 6037 2167 112 0 13 chr12 33808309 33808614 -109977841 + AluSx SINE Alu 1 301 -11 1960 123 0 65 chr12 33808818 33808962 -109977493 + AluSx SINE Alu 1 114 -198 2389 103 0 0 chr12 33808962 33809274 -109977181 + AluSx SINE Alu 1 312 0 1960 123 0 65 chr12 33809274 33809454 -109977001 + AluSx SINE Alu 114 304 -8 184 299 72 72 chr12 33809459 33809556 -109976899 - L2 LINE L2 -37 3235 3139 2320 95 3 0 chr12 33809599 33809894 -109976561 - AluSc SINE Alu -13 296 1 2250 85 3 0 chr12 33809961 33810283 -109976172 - AluSp SINE Alu 0 323 1 1306 126 5 0 chr12 33810288 33810479 -109975976 - AluSp SINE Alu -1 312 121 2103 39 111 7 chr12 33810482 33810761 -109975694 - AluY SINE Alu -3 308 1 694 308 53 32 chr12 33810768 33811106 -109975349 + L2 LINE L2 2969 3313 0 1746 145 50 7 chr12 33811778 33812061 -109974394 + AluJo SINE Alu 3 297 -15 4012 139 13 6 chr12 33812306 33812937 -109973518 + MER41B LTR ERV1 1 635 0 206 260 137 0 chr12 33813012 33813085 -109973370 - MIR SINE MIR -67 195 113 690 209 23 0 chr12 33813085 33813214 -109973241 + AluJb SINE Alu 2 133 -179 2571 52 0 7 chr12 33813222 33813528 -109972927 + AluY SINE Alu 1 304 -7 372 333 33 0 chr12 33813652 33813802 -109972653 + MIR3 SINE MIR 11 165 -43 4023 122 63 8 chr12 33813802 33814468 -109971987 + MER39 LTR ERV1 1 703 -4 2362 92 0 10 chr12 33814600 33814903 -109971552 - AluSg SINE Alu -10 300 1 761 138 9 0 chr12 33815233 33815349 -109971106 + AluJb SINE Alu 2 118 -194 189 0 0 0 chr12 33815352 33815373 -109971082 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 2197 109 0 14 chr12 33815450 33815744 -109970711 + AluSx SINE Alu 1 290 -22 628 339 111 36 chr12 33815980 33816205 -109970250 - L2 LINE L2 -31 3282 3075 1866 159 21 7 chr12 33816205 33816494 -109969961 - AluJb SINE Alu -19 293 1 628 339 111 36 chr12 33816494 33817100 -109969355 - L2 LINE L2 -238 3075 2403 1978 110 24 14 chr12 33817144 33817483 -109968972 + AluSx SINE Alu 1 312 0 1862 152 7 7 chr12 33817495 33817791 -109968664 + AluJb SINE Alu 1 296 -16 1404 91 0 122 chr12 33817861 33817912 -109968543 + AluSg/x SINE Alu 85 141 -169 2268 120 0 0 chr12 33817912 33818213 -109968242 + AluSx SINE Alu 1 301 -11 1404 91 0 122 chr12 33818213 33818415 -109968040 + AluSg/x SINE Alu 141 307 -3 805 148 78 0 chr12 33818418 33818560 -109967895 + FRAM SINE Alu 1 153 -23 298 285 121 14 chr12 33818641 33818848 -109967607 - L2 LINE L2 -1340 1974 1746 2259 85 44 0 chr12 33819115 33819408 -109967047 - AluSx SINE Alu -6 306 1 2417 95 0 0 chr12 33819458 33819763 -109966692 - AluY SINE Alu -6 305 1 239 252 122 84 chr12 33820303 33820333 -109966122 + MER91C DNA MER1_type 4 31 -109 2483 76 3 0 chr12 33820333 33820634 -109965821 - AluSg SINE Alu -8 302 1 239 252 122 84 chr12 33820634 33820734 -109965721 + MER91C DNA MER1_type 31 139 -1 1439 121 10 0 chr12 33821049 33821248 -109965207 - AluSq SINE Alu -17 296 96 2439 85 3 0 chr12 33823297 33823603 -109962852 - AluSq SINE Alu -6 307 1 241 125 172 0 chr12 33823761 33823825 -109962630 - L1ME4a LINE L1 0 6121 6047 2241 119 0 3 chr12 33824030 33824341 -109962114 - AluSq SINE Alu -3 310 1 1972 145 13 0 chr12 33824399 33824703 -109961752 + AluSg SINE Alu 1 308 -2 2376 55 13 7 chr12 33825043 33825352 -109961103 + AluY SINE Alu 1 311 0 377 181 103 35 chr12 33825422 33825538 -109960917 - MIR SINE MIR -42 220 97 690 193 22 30 chr12 33826134 33826269 -109960186 + MER94 DNA DNA 1 134 0 182 245 0 20 chr12 33826288 33826337 -109960118 + MIR SINE MIR 87 134 -74 975 172 11 17 chr12 33826337 33826517 -109959938 - FRAM SINE Alu -2 174 1 2265 112 0 0 chr12 33826525 33826819 -109959636 - AluSx SINE Alu -18 294 1 1342 175 29 71 chr12 33826822 33827131 -109959324 - AluJb SINE Alu -16 296 1 2434 72 7 3 chr12 33828253 33828557 -109957898 - AluSp SINE Alu -8 305 1 382 314 22 7 chr12 33828634 33828771 -109957684 - MIR SINE MIR -113 149 11 2109 149 36 0 chr12 33828832 33829167 -109957288 - L1PA16 LINE L1 -23 6143 5797 485 272 88 41 chr12 33829538 33829958 -109956497 - L1PA16 LINE L1 -438 5725 5255 1995 155 20 0 chr12 33830734 33831037 -109955418 + AluJb SINE Alu 1 309 -3 709 62 134 0 chr12 33831130 33831227 -109955228 + MER83 LTR ERV1 1 110 -338 * 1958 127 66 91 chr12 33831226 33831549 -109954906 + MER83 LTR ERV1 50 362 -86 2631 59 0 0 chr12 33831549 33831855 -109954600 + AluY SINE Alu 1 306 -5 1958 127 66 91 chr12 33831855 33831940 -109954515 + MER83 LTR ERV1 362 448 0 220 229 0 0 chr12 33832688 33832736 -109953719 + A-rich Low_complexity Low_complexity 4 51 0 317 203 0 16 chr12 33832772 33832836 -109953619 - MER112 DNA MER1_type -189 71 9 4619 56 40 20 chr12 33833328 33834341 -109952114 + MER11A LTR ERVK 1 1266 0 1961 151 10 7 chr12 33834414 33834712 -109951743 + AluJb SINE Alu 1 299 -13 2108 123 0 33 chr12 33835055 33835355 -109951100 + AluJb SINE Alu 1 290 -22 315 0 0 0 chr12 33836070 33836105 -109950350 + (CA)n Simple_repeat Simple_repeat 2 36 0 254 346 9 19 chr12 33836319 33836426 -109950029 - L1ME LINE L1 -533 5588 5483 1662 119 131 8 chr12 33836432 33836692 -109949763 - AluSg1 SINE Alu -17 292 1 205 183 33 17 chr12 33836699 33836759 -109949696 + T-rich Low_complexity Low_complexity 4 64 0 421 301 27 0 chr12 33836952 33837098 -109949357 - L1ME LINE L1 -897 5462 5313 1273 151 0 0 chr12 33837105 33837323 -109949132 - L1MA4 LINE L1 -11 6289 6072 2480 191 60 35 chr12 33838128 33838693 -109947762 - L1P LINE L1 -5557 589 11 880 289 29 7 chr12 33838981 33839289 -109947166 + L1ME LINE L1 5485 5799 -371 206 143 41 20 chr12 33839349 33839398 -109947057 + (TA)n Simple_repeat Simple_repeat 2 51 0 2403 185 25 34 chr12 33839480 33839647 -109946808 - L1MB5 LINE L1 -1 6173 6006 2276 108 3 0 chr12 33839647 33839944 -109946511 + AluSq SINE Alu 2 299 -14 2403 185 25 34 chr12 33839944 33840328 -109946127 - L1MB5 LINE L1 -168 6006 5627 524 202 11 0 chr12 33840342 33840431 -109946024 + AluJ/FLAM SINE Alu 2 91 -221 345 158 118 53 chr12 33840433 33840509 -109945946 + HERVL40 LTR ERVL 1067 1147 -4383 3782 261 63 26 chr12 33841040 33841518 -109944937 + HERVL40 LTR ERVL 3181 3640 -1890 414 0 0 0 chr12 33841518 33841564 -109944891 + (CA)n Simple_repeat Simple_repeat 2 47 0 3782 261 63 26 chr12 33841564 33842184 -109944271 + HERVL40 LTR ERVL 3640 4319 -1211 354 191 0 128 chr12 33842193 33842263 -109944192 + MER58A DNA MER1_type 1 58 -283 2202 117 0 3 chr12 33842263 33842562 -109943893 + AluSx SINE Alu 2 299 -13 354 191 0 128 chr12 33842562 33842585 -109943870 + MER58A DNA MER1_type 58 82 -142 234 62 0 0 chr12 33842593 33842625 -109943830 + (CA)n Simple_repeat Simple_repeat 2 33 0 871 262 62 51 chr12 33842625 33842759 -109943696 + HERVL40 LTR ERVL 3675 3818 -1712 1784 50 0 0 chr12 33842759 33842961 -109943494 - AluY SINE Alu -73 238 37 871 262 62 51 chr12 33842961 33843073 -109943382 + HERVL40 LTR ERVL 3818 3927 -1603 681 222 22 0 chr12 33843078 33843213 -109943242 + MER58A DNA MER1_type 87 224 0 555 259 7 14 chr12 33843216 33843355 -109943100 + HERVL40 LTR ERVL 4328 4465 -1065 2230 166 60 114 chr12 33843422 33844002 -109942453 - MER44D DNA MER2_type -1 604 1 523 285 47 99 chr12 33844269 33844672 -109941783 - MER110 LTR ERV1 -4 487 106 2114 119 0 11 chr12 33845069 33845386 -109941069 - AluSx SINE Alu 0 314 1 2266 94 3 10 chr12 33845545 33845844 -109940611 - AluSp SINE Alu -12 301 5 284 253 51 0 chr12 33846194 33846273 -109940182 - LTR37B LTR ERV1 -385 83 1 237 65 0 0 chr12 33846353 33846384 -109940071 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 843 167 7 0 chr12 33846404 33846542 -109939913 - AluJo SINE Alu -173 139 1 1767 107 41 24 chr12 33847120 33847411 -109939044 - AluSx SINE Alu -14 298 3 715 112 0 0 chr12 33847412 33847510 -109938945 - AluJo SINE Alu -176 136 39 894 228 31 24 chr12 33847688 33847942 -109938513 - MIR SINE MIR 0 262 7 295 296 15 45 chr12 33848917 33849049 -109937406 - MIR SINE MIR -14 248 121 229 316 0 0 chr12 33849311 33849390 -109937065 - L2 LINE L2 -3 3269 3191 253 287 52 9 chr12 33849590 33849705 -109936750 + MER65B LTR ERV1 3 122 -409 2269 78 13 32 chr12 33849705 33850013 -109936442 + AluSg SINE Alu 1 302 -8 1268 232 68 0 chr12 33850452 33850732 -109935723 - MER58B DNA MER1_type -26 315 17 462 167 167 37 chr12 33850759 33850775 -109935680 - MER45 DNA AcHobo -1459 122 109 2124 92 21 7 chr12 33850775 33851058 -109935397 + AluSq SINE Alu 13 299 -14 462 167 167 37 chr12 33851058 33851149 -109935306 - MER45 DNA AcHobo -1472 109 1 2049 87 0 30 chr12 33851733 33851998 -109934457 - AluSg SINE Alu -53 257 1 21 36 0 0 chr12 33852094 33852122 -109934333 + AT_rich Low_complexity Low_complexity 1 28 0 764 300 94 47 chr12 33852457 33852708 -109933747 - LTR33 LTR ERVL 0 521 283 4504 86 60 24 chr12 33852708 33852871 -109933584 - LTR8 LTR ERV1 0 691 535 2266 106 17 0 chr12 33852871 33853173 -109933282 - AluSx SINE Alu -5 307 1 4504 86 60 24 chr12 33853173 33853676 -109932779 - LTR8 LTR ERV1 -156 535 1 764 300 94 47 chr12 33853676 33853891 -109932564 - LTR33 LTR ERVL -238 283 33 2206 105 10 10 chr12 33854007 33854312 -109932143 - AluSx SINE Alu -7 305 1 243 146 0 0 chr12 33854547 33854588 -109931867 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 3756 94 6 6 chr12 33854602 33855113 -109931342 - MER9 LTR ERVK 0 511 1 931 280 121 61 chr12 33855360 33855712 -109930743 - L1MEd LINE L1 -5381 738 408 2348 98 0 22 chr12 33855712 33856030 -109930425 - AluY SINE Alu 0 311 1 931 280 121 61 chr12 33856030 33856060 -109930395 - L1MEd LINE L1 -5711 408 381 2492 91 0 0 chr12 33856060 33856368 -109930087 - AluSx SINE Alu -4 308 1 931 280 121 61 chr12 33856368 33856473 -109929982 - L1MEd LINE L1 -5738 381 221 231 167 42 0 chr12 33856486 33856534 -109929921 - L1MEd LINE L1 -6042 77 28 2186 109 3 3 chr12 33856796 33857090 -109929365 - AluSx SINE Alu -18 294 1 2206 100 3 3 chr12 33857529 33857829 -109928626 - AluSx SINE Alu -12 300 1 434 242 97 0 chr12 33857964 33858088 -109928367 + L2 LINE L2 2483 2618 -696 746 231 57 57 chr12 33858092 33858373 -109928082 - MER34 LTR ERV1 -5 537 257 4179 123 3 10 chr12 33858381 33858997 -109927458 - LTR9 LTR ERV1 0 612 1 2270 77 0 68 chr12 33859124 33859448 -109927007 + AluSx SINE Alu 1 302 -10 542 231 30 59 chr12 33859448 33859510 -109926945 - MER34 LTR ERV1 -378 164 102 2425 135 94 2 chr12 33859510 33859924 -109926531 + LTR47A LTR ERVL 1 452 0 542 231 30 59 chr12 33859924 33860030 -109926425 - MER34 LTR ERV1 -440 102 1 434 242 23 45 chr12 33860031 33860163 -109926292 + L2 LINE L2 2616 2744 -570 3664 109 43 6 chr12 33860167 33860701 -109925754 - MER41A LTR ERV1 0 554 1 1992 146 44 0 chr12 33860705 33861000 -109925455 + AluSx SINE Alu 1 308 -4 1387 125 37 148 chr12 33861000 33861351 -109925104 - Tigger1 DNA MER2_type -2106 312 1 418 151 116 0 chr12 33861351 33861437 -109925018 - L1MB8 LINE L1 -255 5923 5828 848 126 86 26 chr12 33861437 33861588 -109924867 - MER2 DNA MER2_type 0 345 186 1103 105 149 6 chr12 33861588 33861769 -109924686 + AluSg/x SINE Alu 85 291 -21 2303 93 0 35 chr12 33861779 33861895 -109924560 + AluSg SINE Alu 1 120 -190 2500 68 7 0 chr12 33861895 33862202 -109924253 + AluY SINE Alu 1 309 -2 2303 93 0 35 chr12 33862202 33862395 -109924060 + AluSg SINE Alu 120 299 -11 756 171 171 0 chr12 33862397 33862549 -109923906 - MER2 DNA MER2_type -167 178 1 2001 157 6 14 chr12 33862549 33862894 -109923561 - L1MB8 LINE L1 -355 5829 5488 2123 105 0 10 chr12 33862895 33863191 -109923264 - AluSx SINE Alu 0 312 20 533 267 39 17 chr12 33863203 33863383 -109923072 - MIR SINE MIR -65 197 14 632 171 23 54 chr12 33863794 33863923 -109922532 + AluJo SINE Alu 11 135 -177 1273 189 5 0 chr12 33863923 33864145 -109922310 + AluJb SINE Alu 85 307 -5 1885 153 0 0 chr12 33864145 33864460 -109921995 + AluSx SINE Alu 1 315 0 442 238 79 38 chr12 33865085 33865321 -109921134 - MIR SINE MIR -14 248 9 216 0 0 0 chr12 33865365 33865389 -109921066 + (A)n Simple_repeat Simple_repeat 1 24 0 1576 146 3 93 chr12 33865389 33865710 -109920745 + AluJb SINE Alu 1 292 -20 566 226 9 0 chr12 33865905 33866020 -109920435 + MLT2B1 LTR ERVL 1 116 -404 1109 102 0 7 chr12 33866022 33866169 -109920286 + AluSq/x SINE Alu 3 148 -165 1968 155 3 3 chr12 33866442 33866752 -109919703 + AluJb SINE Alu 1 310 -2 2321 93 10 3 chr12 33866765 33867076 -109919379 + AluSq SINE Alu 1 313 0 609 183 131 22 chr12 33867076 33867213 -109919242 + LTR34 LTR ERV1 548 699 0 645 229 66 6 chr12 33867923 33868089 -109918366 + MER51D LTR ERV1 461 636 -21 253 83 125 42 chr12 33868107 33868155 -109918300 - Charlie8 DNA MER1_type -2159 258 207 1129 69 0 0 chr12 33868155 33868286 -109918169 + AluSq/x SINE Alu 2 132 -180 2406 75 0 0 chr12 33868289 33868583 -109917872 + AluSg SINE Alu 1 294 -16 600 189 0 9 chr12 33868586 33868692 -109917763 - AluJo/FLAM SINE Alu -187 125 21 603 167 125 17 chr12 33869051 33869171 -109917284 + FLAM_C SINE Alu 1 133 0 338 136 150 23 chr12 33869216 33869350 -109917105 - AluJb SINE Alu -4 298 114 2147 80 62 3 chr12 33869921 33870210 -109916245 + AluSq SINE Alu 1 306 -7 1086 181 0 46 chr12 33870418 33870634 -109915821 + MER2 DNA MER2_type 1 206 -139 253 150 33 33 chr12 33870744 33870804 -109915651 - L2 LINE L2 -75 3238 3179 201 319 0 0 chr12 33870797 33870844 -109915611 - L2 LINE L2 -64 3208 3162 * 341 233 187 99 chr12 33871289 33871491 -109914964 - MER102b DNA MER1_type -1088 340 108 2311 65 16 56 chr12 33871491 33871813 -109914642 - AluSx SINE Alu -3 309 1 341 233 187 99 chr12 33871813 33871872 -109914583 - MER102b DNA MER1_type -1320 108 56 26 74 0 0 chr12 33872446 33872500 -109913955 + GC_rich Low_complexity Low_complexity 1 54 0 289 250 0 0 chr12 33872660 33872728 -109913727 - L2 LINE L2 -27 3245 3178 25 0 0 0 chr12 33872728 33872753 -109913702 + AT_rich Low_complexity Low_complexity 1 25 0 2398 98 0 0 chr12 33873863 33874168 -109912287 - AluSg SINE Alu -5 305 1 464 269 103 17 chr12 33874579 33874754 -109911701 + MIR SINE MIR 71 260 -2 304 337 32 21 chr12 33874807 33874997 -109911458 - L2 LINE L2 -573 2741 2550 236 261 0 45 chr12 33875686 33875774 -109910681 - L1MA9 LINE L1 0 6312 6229 670 213 15 84 chr12 33875774 33876047 -109910408 - LTR34 LTR ERV1 0 699 446 801 183 52 16 chr12 33876556 33876747 -109909708 + LTR47A LTR ERVL 214 411 -41 1218 163 15 4 chr12 33876754 33877100 -109909355 - L1P5 LINE L1 -677 5474 5126 695 198 2 25 chr12 33877100 33877171 -109909284 + L1ME1 LINE L1 5747 5818 -333 2231 104 0 17 chr12 33877171 33877470 -109908985 + AluSc SINE Alu 1 294 -15 695 198 2 25 chr12 33877470 33877571 -109908884 + L1ME1 LINE L1 5818 5915 -236 340 259 60 9 chr12 33877595 33877711 -109908744 + L1ME1 LINE L1 5893 6014 -152 287 170 19 0 chr12 33877776 33877829 -109908626 - FRAM/FAM SINE Alu -117 49 1 21 36 0 0 chr12 33877829 33877857 -109908598 + AT_rich Low_complexity Low_complexity 1 28 0 2190 121 7 3 chr12 33878153 33878459 -109907996 - AluSq SINE Alu -6 307 1 1269 277 40 70 chr12 33878859 33879287 -109907168 + L2 LINE L2 1874 2279 -1035 1410 175 17 55 chr12 33879287 33879579 -109906876 - AluJo SINE Alu -31 281 1 1269 277 40 70 chr12 33879579 33879778 -109906677 + L2 LINE L2 2279 2482 -832 21 36 0 0 chr12 33879876 33879904 -109906551 + AT_rich Low_complexity Low_complexity 1 28 0 1110 202 0 32 chr12 33879930 33880207 -109906248 + L1M4 LINE L1 4924 5191 -955 330 115 0 0 chr12 33880268 33880320 -109906135 + (TG)n Simple_repeat Simple_repeat 1 52 0 652 221 138 37 chr12 33880391 33880689 -109905766 - L1ME3A LINE L1 -208 5962 5635 523 186 0 0 chr12 33880876 33880962 -109905493 - FAM SINE Alu -21 164 79 1787 164 111 39 chr12 33880985 33881419 -109905036 + LTR10A LTR ERV1 82 546 -63 513 194 43 0 chr12 33881432 33881525 -109904930 - AluJo SINE Alu -90 222 126 2226 102 3 3 chr12 33881529 33881853 -109904602 - AluSc SINE Alu 0 309 1 2322 101 0 0 chr12 33881882 33882180 -109904275 - AluSc SINE Alu -11 298 1 448 250 32 36 chr12 33882200 33882407 -109904048 - L1ME3A LINE L1 -741 5423 5217 393 288 117 24 chr12 33882408 33882613 -109903842 + L2 LINE L2 2688 2911 -403 930 143 0 0 chr12 33882942 33883068 -109903387 + FLAM_C SINE Alu 1 126 -17 932 169 53 5 chr12 33883407 33883596 -109902859 - L1MB7 LINE L1 0 6184 5987 685 244 124 31 chr12 33883710 33883968 -109902487 + MLT1L LTR MaLR 1 282 -333 208 156 67 22 chr12 33884055 33884100 -109902355 - L2 LINE L2 -5 3267 3221 289 170 19 0 chr12 33884288 33884341 -109902114 + MLT1L LTR MaLR 341 394 -221 247 218 55 0 chr12 33884378 33884433 -109902022 + MLT1L LTR MaLR 465 522 -93 221 222 16 0 chr12 33884449 33884512 -109901943 + CT-rich Low_complexity Low_complexity 3 66 0 1186 179 9 22 chr12 33884512 33884736 -109901719 - AluJb SINE Alu -7 305 85 1893 238 89 26 chr12 33884826 33885334 -109901121 + MLT1E LTR MaLR 1 540 -53 46 16 0 16 chr12 33885385 33885433 -109901022 + AT_rich Low_complexity Low_complexity 1 49 -14 2473 62 0 7 chr12 33885433 33885754 -109900701 + AluSx SINE Alu 1 312 0 46 16 0 16 chr12 33885754 33885769 -109900686 + AT_rich Low_complexity Low_complexity 49 63 0 322 258 11 22 chr12 33885851 33885940 -109900515 - MER46C DNA MER2_type -249 89 2 268 321 28 0 chr12 33885941 33886047 -109900408 + MIR SINE MIR 153 261 -1 270 233 14 0 chr12 33886082 33886155 -109900300 + MIR SINE MIR 74 147 -61 2261 118 0 0 chr12 33886656 33886960 -109899495 - AluSx SINE Alu 0 312 9 225 252 37 65 chr12 33887169 33887276 -109899179 - L2 LINE L2 -749 2565 2462 543 259 60 15 chr12 33887284 33887485 -109898970 - L2 LINE L2 0 3313 3104 370 274 0 10 chr12 33887536 33887638 -109898817 + MER46C DNA MER2_type 224 324 -14 221 348 0 0 chr12 33887643 33887712 -109898743 - MIR SINE MIR -108 154 86 2404 167 29 29 chr12 33888087 33888437 -109898018 + MER66A LTR ERV1 27 380 -98 1951 138 3 0 chr12 33888437 33888744 -109897711 + AluSx SINE Alu 1 308 0 2404 167 29 29 chr12 33888744 33888841 -109897614 + MER66A LTR ERV1 379 475 -3 186 71 0 0 chr12 33888916 33888944 -109897511 + (TG)n Simple_repeat Simple_repeat 2 29 0 633 197 98 0 chr12 33889071 33889193 -109897262 - FRAM SINE Alu -40 136 3 2496 76 0 10 chr12 33889216 33889530 -109896925 - AluY SINE Alu 0 311 1 2338 102 0 0 chr12 33889530 33889823 -109896632 - AluSx SINE Alu -18 294 1 2073 133 0 10 chr12 33889824 33890133 -109896322 - AluSx SINE Alu -6 306 1 21 0 0 0 chr12 33890148 33890169 -109896286 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr12 33890180 33890226 -109896229 + (CTATT)n Simple_repeat Simple_repeat 1 46 0 1659 157 39 25 chr12 33890227 33890508 -109895947 - AluJo SINE Alu -27 285 1 226 0 0 56 chr12 33890512 33890548 -109895907 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2325 86 0 0 chr12 33890552 33890842 -109895613 - AluY SINE Alu -21 290 1 2208 98 7 0 chr12 33890984 33891271 -109895184 + AluSq SINE Alu 1 289 -24 872 121 0 0 chr12 33891307 33891423 -109895032 + AluSq/x SINE Alu 1 116 -197 2082 176 31 5 chr12 33891489 33891880 -109894575 - MER57A LTR ERV1 0 403 3 22 0 0 0 chr12 33893649 33893671 -109892784 + AT_rich Low_complexity Low_complexity 1 22 0 2106 117 0 23 chr12 33893671 33893978 -109892477 - AluSx SINE Alu -2 310 11 2426 85 0 3 chr12 33893994 33894299 -109892156 - AluSq SINE Alu -9 304 1 669 196 0 43 chr12 33894333 33894471 -109891984 + FLAM_C SINE Alu 2 133 0 300 111 0 0 chr12 33894473 33894527 -109891928 + (GGGGA)n Simple_repeat Simple_repeat 5 58 0 1467 98 10 0 chr12 33894970 33895164 -109891291 + AluSc SINE Alu 103 298 -11 249 128 0 0 chr12 33895216 33895255 -109891200 + Alu SINE Alu 1 39 -264 2268 104 3 0 chr12 33895256 33895554 -109890901 + AluSq SINE Alu 1 299 -14 1185 133 0 0 chr12 33895554 33895719 -109890736 + AluSg/x SINE Alu 134 298 -14 2446 112 37 49 chr12 33895719 33896199 -109890256 - MER4E LTR ERV1 -316 326 1 345 177 73 10 chr12 33896210 33896306 -109890149 - L1MC4 LINE L1 -501 7541 7440 1952 142 13 13 chr12 33896326 33896636 -109889819 + AluSx SINE Alu 1 310 -2 447 126 63 84 chr12 33896686 33896781 -109889674 - U6 snRNA snRNA 0 107 15 2410 69 0 0 chr12 33896782 33897070 -109889385 + AluY SINE Alu 1 288 -23 506 256 0 12 chr12 33897070 33897230 -109889225 + (CATA)n Simple_repeat Simple_repeat 3 160 0 805 171 0 0 chr12 33897296 33897425 -109889030 + FLAM_C SINE Alu 1 129 -4 245 224 45 97 chr12 33897428 33897562 -109888893 - LTR40b LTR ERVL -7 455 329 476 242 150 65 chr12 33897766 33898072 -109888383 + LTR68 LTR ERV1 405 736 -4 1422 107 46 18 chr12 33898379 33898620 -109887835 - pTR5 LTR ERV1 -107 607 171 375 204 31 20 chr12 33898622 33898720 -109887735 - LTR30 LTR ERV1 -80 642 544 5851 132 58 117 chr12 33898720 33900083 -109886372 - pTR5 LTR ERV1 -413 2025 743 2851 141 24 12 chr12 33900209 33900798 -109885657 + MER4E LTR ERV1 3 766 0 369 238 68 122 chr12 33900903 33900943 -109885512 - MLT1J LTR MaLR -195 316 275 2612 127 53 14 chr12 33900943 33901376 -109885079 + LTR7 LTR ERV1 1 450 0 369 238 68 122 chr12 33901376 33901619 -109884836 - MLT1J LTR MaLR -236 275 47 303 28 0 0 chr12 33901619 33901655 -109884800 + (TG)n Simple_repeat Simple_repeat 2 37 0 6198 61 14 13 chr12 33901742 33902368 -109884087 + MER4E LTR ERV1 1 630 -136 2487 57 10 3 chr12 33902368 33902669 -109883786 + AluY SINE Alu 1 303 -8 6198 61 14 13 chr12 33902669 33902807 -109883648 + MER4E LTR ERV1 630 766 0 861 255 81 43 chr12 33902874 33903270 -109883185 + LTR16A1 LTR ERVL 47 457 0 391 188 89 0 chr12 33903277 33903378 -109883077 + L1MC/D LINE L1 5667 5776 -2032 2218 108 0 3 chr12 33903458 33903755 -109882700 - AluSq SINE Alu -17 296 1 747 189 77 0 chr12 33903760 33903903 -109882552 - LTR8 LTR ERV1 -537 154 1 2496 65 0 0 chr12 33903941 33904235 -109882220 + AluY SINE Alu 1 294 -17 307 203 29 0 chr12 33904367 33904436 -109882019 + LTR10A LTR ERV1 182 252 -357 1941 134 72 33 chr12 33904476 33904835 -109881620 + LTR10A LTR ERV1 176 548 -61 2595 39 3 10 chr12 33904867 33905175 -109881280 + AluY SINE Alu 1 306 -5 1860 166 23 0 chr12 33905191 33905493 -109880962 + AluJb SINE Alu 1 309 -3 1650 145 78 28 chr12 33906286 33906421 -109880034 + AluSq SINE Alu 1 128 -185 2096 101 4 0 chr12 33906421 33906732 -109879723 + AluSg SINE Alu 1 312 0 1650 145 78 28 chr12 33906732 33906877 -109879578 + AluSq SINE Alu 128 296 -17 392 54 0 18 chr12 33906880 33906936 -109879519 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 340 264 113 13 chr12 33906958 33907117 -109879338 + L1M4 LINE L1 3089 3263 -2883 546 366 67 20 chr12 33907138 33907589 -109878866 + L1M4 LINE L1 3374 3845 -2301 1348 102 6 0 chr12 33907655 33907832 -109878623 + AluY SINE Alu 38 215 -96 1945 109 127 15 chr12 33908182 33908342 -109878113 - LTR29 LTR ERV1 -244 378 237 3342 130 27 4 chr12 33908342 33908827 -109877628 - LOR1a LTR ERV1 0 497 2 1945 109 127 15 chr12 33908827 33909006 -109877449 - LTR29 LTR ERV1 -385 237 1 411 288 105 48 chr12 33909011 33909240 -109877215 + L1MEd LINE L1 599 840 -5279 818 153 8 0 chr12 33909345 33909469 -109876986 + AluSq/x SINE Alu 11 135 -178 1810 119 98 3 chr12 33909469 33909754 -109876701 + AluSx SINE Alu 1 312 0 638 217 25 12 chr12 33909781 33909942 -109876513 + L1MEd LINE L1 946 1108 -5011 808 268 161 28 chr12 33910030 33910501 -109875954 - LTR1B LTR ERV1 -237 589 56 353 267 46 38 chr12 33910528 33910659 -109875796 + L1MEd LINE L1 1105 1236 -4883 * 462 277 89 78 chr12 33910654 33911009 -109875446 + HAL1b LINE L1 165 514 -834 1705 181 0 30 chr12 33911009 33911313 -109875142 + AluJb SINE Alu 6 300 -12 462 277 89 78 chr12 33911313 33911650 -109874805 + HAL1b LINE L1 514 865 -483 2051 108 10 16 chr12 33911709 33912014 -109874441 + AluSg SINE Alu 1 303 -7 180 0 0 0 chr12 33913067 33913087 -109873368 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2364 164 96 30 chr12 33913264 33913794 -109872661 - LTR49 LTR ERV1 -30 565 1 343 289 52 77 chr12 33913965 33914008 -109872447 + L1MEd LINE L1 2721 2764 -3365 2095 129 0 7 chr12 33914008 33914317 -109872138 + AluSx SINE Alu 1 307 -5 343 289 52 77 chr12 33914317 33914598 -109871857 + L1MEd LINE L1 2764 3037 -3092 1616 203 85 91 chr12 33914648 33915165 -109871290 - LTR8A LTR ERV1 0 727 214 562 158 40 0 chr12 33916070 33916171 -109870284 - FAM SINE Alu -13 172 68 2130 109 0 7 chr12 33916171 33916464 -109869991 - AluSx SINE Alu -16 296 6 3720 199 64 13 chr12 33916477 33917352 -109869103 - L1MCb LINE L1 -4851 1194 275 639 203 0 16 chr12 33917355 33917478 -109868977 - MER57A LTR ERV1 -25 378 258 1569 135 24 105 chr12 33917494 33917828 -109868627 - AluYb8 SINE Alu -11 307 1 923 243 102 49 chr12 33917828 33918133 -109868322 - L1MCb LINE L1 -6094 470 150 1021 192 9 45 chr12 33918145 33918369 -109868086 - AluJo SINE Alu -12 300 85 735 233 72 57 chr12 33918413 33918675 -109867780 - L2 LINE L2 0 3313 3048 451 272 154 5 chr12 33920384 33920579 -109865876 - LTR33 LTR ERVL -8 513 290 380 213 111 8 chr12 33920579 33920713 -109865742 - L1ME4a LINE L1 -261 5860 5713 354 195 12 12 chr12 33921186 33921268 -109865187 + L1MEd LINE L1 2239 2320 -3809 * 1380 198 3 32 chr12 33921265 33921525 -109864930 + L1MEd LINE L1 3587 3838 -2291 1909 171 59 102 chr12 33921525 33921805 -109864650 - MLT1D LTR MaLR 0 505 257 2156 125 0 3 chr12 33921805 33922100 -109864355 + AluSg SINE Alu 1 294 -16 1909 171 59 102 chr12 33922100 33922346 -109864109 - MLT1D LTR MaLR -248 257 2 1380 198 3 32 chr12 33922346 33922398 -109864057 + L1MEd LINE L1 3838 3890 -2239 336 134 72 0 chr12 33922398 33922473 -109863982 + AluS SINE Alu 5 62 -239 1147 106 33 11 chr12 33922675 33922855 -109863600 - L1MA4 LINE L1 -300 6000 5817 369 93 0 0 chr12 33922855 33922909 -109863546 + (TCCC)n Simple_repeat Simple_repeat 1 54 0 773 173 0 0 chr12 33922909 33923019 -109863436 - AluJb SINE Alu -30 282 173 2240 125 0 0 chr12 33923055 33923359 -109863096 - AluSg SINE Alu -5 305 2 1529 99 15 73 chr12 33923360 33923476 -109862979 - L1MA4 LINE L1 -471 5829 5708 2256 110 0 0 chr12 33923476 33923768 -109862687 - AluSc SINE Alu -17 292 1 1529 99 15 73 chr12 33923768 33923923 -109862532 - L1MA4 LINE L1 -592 5708 5574 299 247 43 0 chr12 33924031 33924124 -109862331 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 1938 150 3 26 chr12 33924373 33924680 -109861775 + AluJb SINE Alu 1 300 -12 38 68 0 0 chr12 33924788 33924861 -109861594 + AT_rich Low_complexity Low_complexity 1 73 0 1991 150 3 3 chr12 33925141 33925441 -109861014 - AluJb SINE Alu -12 300 1 267 259 36 22 chr12 33926804 33926943 -109859512 - L1M4 LINE L1 -3704 2442 2302 * 1705 272 41 21 chr12 33926930 33927766 -109858689 - L1ME3 LINE L1 -274 5888 5035 3131 94 22 20 chr12 33927863 33928320 -109858135 - L1PA10 LINE L1 -106 6062 5605 2075 46 0 0 chr12 33928519 33928758 -109857697 - L1PA8 LINE L1 -1 6171 5933 4101 98 11 14 chr12 33928758 33929544 -109856911 - L1P3 LINE L1 -4523 1938 1153 292 237 114 9 chr12 33929554 33929668 -109856787 - L1P3 LINE L1 -5660 801 676 654 264 103 47 chr12 33929915 33930422 -109856033 + MER41D-int LTR ERV1 7195 7729 -27 1117 157 0 0 chr12 33930427 33930599 -109855856 + AluSg/x SINE Alu 132 303 -7 3115 198 11 2 chr12 33930632 33931184 -109855271 + MER41D LTR ERV1 1 557 0 471 234 16 8 chr12 33931859 33931987 -109854468 - MIR SINE MIR 0 262 134 1000 106 0 0 chr12 33931998 33932130 -109854325 - FLAM_C SINE Alu -11 132 1 351 275 0 8 chr12 33932135 33932235 -109854220 - MIR SINE MIR -61 147 52 2309 91 0 26 chr12 33932382 33932548 -109853907 - AluSx SINE Alu -13 299 143 2287 111 0 0 chr12 33932548 33932854 -109853601 - AluSx SINE Alu -4 308 3 2309 91 0 26 chr12 33932854 33932994 -109853461 - AluSx SINE Alu -169 143 1 718 268 30 44 chr12 33933145 33933440 -109853015 - AluJb SINE Alu -11 301 11 297 0 0 0 chr12 33933677 33933710 -109852745 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 2031 130 0 18 chr12 33933710 33933995 -109852460 - AluSx SINE Alu -32 280 1 36 23 0 0 chr12 33934060 33934103 -109852352 + AT_rich Low_complexity Low_complexity 1 43 0 1639 207 34 0 chr12 33934288 33934640 -109851815 + L1ME LINE L1 4071 4434 -1712 2405 90 0 6 chr12 33934654 33934965 -109851490 + AluSg SINE Alu 1 309 -1 747 127 82 30 chr12 33935014 33935148 -109851307 + FRAM SINE Alu 36 176 0 3084 196 29 23 chr12 33935178 33935914 -109850541 + L1ME LINE L1 4521 5260 -886 821 119 0 0 chr12 33935915 33936033 -109850422 + AluY SINE Alu 1 118 -193 638 225 29 14 chr12 33936196 33936334 -109850121 - MIR SINE MIR -82 180 41 358 310 51 19 chr12 33936641 33936799 -109849656 + L1ME LINE L1 5560 5722 -448 984 189 100 0 chr12 33936895 33937085 -109849370 + L1ME LINE L1 5552 5760 -406 3298 106 0 11 chr12 33937097 33937552 -109848903 - L1PB1 LINE L1 -1 6150 5701 2189 100 21 0 chr12 33937904 33938195 -109848260 + AluSx SINE Alu 1 297 -15 558 302 156 16 chr12 33939273 33939581 -109846874 - MARNA DNA Mariner -28 558 208 2256 210 74 67 chr12 33940193 33940368 -109846087 + MER21B LTR ERV1 101 273 -590 2232 116 0 19 chr12 33940368 33940686 -109845769 + AluSx SINE Alu 1 312 0 2256 210 74 67 chr12 33940686 33941216 -109845239 + MER21B LTR ERV1 273 811 -52 22 0 0 0 chr12 33941406 33941428 -109845027 + AT_rich Low_complexity Low_complexity 1 22 0 1283 170 5 0 chr12 33941428 33941640 -109844815 + AluJb SINE Alu 87 299 -13 2179 94 3 38 chr12 33941928 33942247 -109844208 - AluSg SINE Alu 0 310 3 841 164 7 14 chr12 33942358 33942498 -109843957 + FLAM_C SINE Alu 1 139 -4 486 223 7 4 chr12 33942618 33942746 -109843709 + MSTC LTR MaLR 220 379 -48 2392 91 0 0 chr12 33942751 33943047 -109843408 + AluSq SINE Alu 1 296 -17 885 173 45 45 chr12 33943111 33943313 -109843142 - AluJo SINE Alu -13 299 98 729 191 17 0 chr12 33943837 33943976 -109842479 - FLAM_C SINE Alu 0 141 1 1761 186 7 0 chr12 33944042 33944333 -109842122 - AluJb SINE Alu -19 293 1 2350 106 0 0 chr12 33944337 33944639 -109841816 - AluSq SINE Alu -11 302 1 858 266 200 10 chr12 33944994 33945420 -109841035 - L2 LINE L2 -3 3310 2798 2220 123 3 0 chr12 33945442 33945742 -109840713 + AluSx SINE Alu 1 301 -11 1997 167 45 8 chr12 33945765 33946118 -109840337 - MER47A DNA MER2_type 0 366 1 1018 184 6 6 chr12 33946274 33946448 -109840007 - AluJb SINE Alu -2 310 137 1551 128 27 0 chr12 33946682 33946901 -109839554 + AluSg SINE Alu 1 225 -85 292 167 37 0 chr12 33947030 33947084 -109839371 - PRIMA41-int LTR ERV1 -1577 6179 6124 2220 132 0 0 chr12 33947195 33947505 -109838950 + AluSx SINE Alu 3 312 0 206 204 0 19 chr12 33947505 33947559 -109838896 + GA-rich Low_complexity Low_complexity 4 56 0 2131 97 7 0 chr12 33947724 33948003 -109838452 + AluSx SINE Alu 1 281 -31 417 39 0 0 chr12 33948003 33948054 -109838401 + (CCAA)n Simple_repeat Simple_repeat 1 51 0 957 102 0 0 chr12 33948358 33948485 -109837970 - AluSc SINE Alu -182 127 1 1791 88 33 62 chr12 33948486 33948881 -109837574 + MER4E LTR ERV1 538 766 0 2768 177 101 30 chr12 33949581 33949692 -109836763 + L1MB7 LINE L1 5492 5594 -590 1877 89 85 14 chr12 33949692 33949973 -109836482 + AluY SINE Alu 1 301 -10 2768 177 101 30 chr12 33949973 33950505 -109835950 + L1MB7 LINE L1 5594 6181 -3 256 308 96 31 chr12 33950531 33950851 -109835604 + L1M4 LINE L1 4152 4515 -1631 1682 167 7 3 chr12 33950851 33951144 -109835311 + AluSx SINE Alu 1 294 -18 256 308 96 31 chr12 33951144 33951300 -109835155 + L1M4 LINE L1 4515 4659 -1487 301 200 31 0 chr12 33951438 33951503 -109834952 + L1MC4a LINE L1 5783 5849 -1959 834 159 0 0 chr12 33951513 33951639 -109834816 + AluSq/x SINE Alu 1 126 -186 877 163 13 8 chr12 33951641 33951670 -109834785 + GA-rich Low_complexity Low_complexity 1 28 -523 1947 113 7 45 chr12 33951670 33951979 -109834476 + AluSx SINE Alu 1 297 -15 877 163 13 8 chr12 33951979 33952190 -109834265 + GA-rich Low_complexity Low_complexity 28 551 0 331 159 8 76 chr12 33952211 33952343 -109834112 + GA-rich Low_complexity Low_complexity 1 123 0 3469 123 37 4 chr12 33952351 33952861 -109833594 + MER1A DNA MER1_type 1 527 0 322 210 62 0 chr12 33952861 33952942 -109833513 + L1MC4a LINE L1 5856 5941 -1867 2307 84 0 0 chr12 33952943 33953239 -109833216 + AluY SINE Alu 1 296 -15 186 103 0 0 chr12 33953253 33953282 -109833173 + (TG)n Simple_repeat Simple_repeat 2 30 0 1609 186 10 0 chr12 33953440 33953736 -109832719 + AluJb SINE Alu 1 299 -13 2166 82 32 0 chr12 33953775 33954055 -109832400 - AluY SINE Alu -22 289 1 1075 145 0 0 chr12 33954573 33954745 -109831710 - AluJb SINE Alu -6 306 135 2252 80 0 3 chr12 33955170 33955458 -109830997 + AluY SINE Alu 1 287 -24 2132 108 0 3 chr12 33955670 33955966 -109830489 + AluSx SINE Alu 1 295 -17 2446 62 0 3 chr12 33956016 33956321 -109830134 + AluY SINE Alu 1 304 -7 2485 206 10 20 chr12 33956432 33956942 -109829513 - MLT1D LTR MaLR 0 505 1 368 275 0 0 chr12 33957202 33957282 -109829173 - MLT1J LTR MaLR -333 178 99 186 213 64 0 chr12 33958411 33958458 -109827997 + MER5B DNA MER1_type 128 177 -1 2243 98 0 0 chr12 33958584 33958889 -109827566 - AluY SINE Alu -6 305 1 1909 116 0 0 chr12 33959221 33959489 -109826966 + AluSx SINE Alu 7 274 -38 840 132 7 21 chr12 33959489 33959633 -109826822 + AluSg/x SINE Alu 163 304 -8 776 62 0 18 chr12 33959668 33959780 -109826675 + (TTTC)n Simple_repeat Simple_repeat 2 111 0 1605 139 4 26 chr12 33959806 33960072 -109826383 - AluJo SINE Alu -52 260 1 1469 172 0 15 chr12 33960800 33961073 -109825382 + AluJb SINE Alu 21 289 -23 620 219 0 0 chr12 33961075 33961189 -109825266 + AluJo/FLAM SINE Alu 2 115 -197 1936 140 0 0 chr12 33961190 33961482 -109824973 - AluSx SINE Alu -10 302 11 202 239 0 0 chr12 33961540 33961586 -109824869 + (CTATT)n Simple_repeat Simple_repeat 1 46 0 1491 155 43 25 chr12 33961589 33961867 -109824588 - AluJo SINE Alu -29 283 1 226 0 0 56 chr12 33961871 33961907 -109824548 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2155 87 3 0 chr12 33961911 33962200 -109824255 - AluY SINE Alu -21 290 1 2085 98 7 0 chr12 33962342 33962629 -109823826 + AluSq SINE Alu 1 289 -24 818 121 0 0 chr12 33962665 33962781 -109823674 + AluSq/x SINE Alu 1 116 -197 2069 176 31 5 chr12 33962849 33963240 -109823215 - MER57A LTR ERV1 0 403 3 189 392 32 6 chr12 33963999 33964157 -109822298 + L2 LINE L2 1217 1378 -1936 22 0 0 0 chr12 33965008 33965030 -109821425 + AT_rich Low_complexity Low_complexity 1 22 0 1983 117 0 23 chr12 33965030 33965337 -109821118 - AluSx SINE Alu -2 310 11 2296 85 0 3 chr12 33965353 33965658 -109820797 - AluSq SINE Alu -9 304 1 675 196 0 43 chr12 33965692 33965830 -109820625 + FLAM_C SINE Alu 2 133 0 300 111 0 0 chr12 33965832 33965886 -109820569 + (GGGGA)n Simple_repeat Simple_repeat 5 58 0 3771 125 67 96 chr12 33966229 33967035 -109819420 + LTR1 LTR ERV1 3 785 0 749 173 0 8 chr12 33967705 33967832 -109818623 - FLAM_C SINE Alu -16 127 2 254 337 163 13 chr12 33967924 33968230 -109818225 - L2 LINE L2 -979 2335 1984 2080 179 127 54 chr12 33968387 33968883 -109817572 + MLT1F LTR MaLR 3 534 -8 770 175 16 0 chr12 33969075 33969201 -109817254 + FLAM_C SINE Alu 2 129 -14 213 218 0 0 chr12 33969201 33969279 -109817176 + (TA)n Simple_repeat Simple_repeat 1 78 0 345 305 6 90 chr12 33970323 33970500 -109815955 + MIR SINE MIR 47 208 -54 2002 117 14 0 chr12 33970502 33970792 -109815663 - AluSq SINE Alu -19 294 1 1566 128 32 110 chr12 33970843 33971188 -109815267 - AluYb8 SINE Alu 0 318 1 2213 100 0 0 chr12 33971313 33971613 -109814842 + AluSg1 SINE Alu 1 300 -9 426 255 99 21 chr12 33971886 33972027 -109814428 - L1ME4a LINE L1 -1 6120 5969 2365 82 0 0 chr12 33972095 33972400 -109814055 - AluY SINE Alu -5 306 2 1944 105 49 0 chr12 33972402 33972687 -109813768 - AluSq SINE Alu -14 299 1 2271 82 3 3 chr12 33972737 33973040 -109813415 - AluSc SINE Alu -6 303 1 2122 85 3 0 chr12 33973107 33973429 -109813026 - AluSp SINE Alu 0 323 1 1237 126 5 0 chr12 33973434 33973625 -109812830 - AluSp SINE Alu -1 312 121 2051 43 111 0 chr12 33973625 33973905 -109812550 - AluY SINE Alu 0 311 1 819 308 53 32 chr12 33973912 33974250 -109812205 + L2 LINE L2 2969 3313 0 1636 145 50 7 chr12 33974922 33975205 -109811250 + AluJo SINE Alu 3 297 -15 4010 139 13 6 chr12 33975450 33976081 -109810374 + MER41B LTR ERV1 1 635 0 247 250 167 52 chr12 33976156 33976228 -109810227 - MIR SINE MIR -67 195 108 1427 184 6 58 chr12 33976228 33976366 -109810089 + AluJb SINE Alu 1 145 -167 2349 65 0 0 chr12 33976366 33976659 -109809796 + AluY SINE Alu 1 293 -18 1427 184 6 58 chr12 33976659 33976847 -109809608 + AluJb SINE Alu 145 310 -2 247 250 167 52 chr12 33976847 33976870 -109809585 - MIR SINE MIR -154 108 89 688 193 22 30 chr12 33976915 33977050 -109809405 - MER94 DNA DNA 0 134 1 433 181 103 35 chr12 33977646 33977762 -109808693 + MIR SINE MIR 97 220 -42 2250 55 13 7 chr12 33977832 33978141 -109808314 - AluY SINE Alu 0 311 1 1841 148 10 0 chr12 33978481 33978786 -109807669 - AluSg SINE Alu -2 308 1 2116 119 0 3 chr12 33978844 33979155 -109807300 + AluSq SINE Alu 1 310 -3 231 125 172 0 chr12 33979360 33979424 -109807031 + L1ME4a LINE L1 6047 6121 0 2311 85 3 0 chr12 33979582 33979888 -109806567 + AluSq SINE Alu 1 307 -6 1359 121 10 0 chr12 33981937 33982136 -109804319 + AluSq SINE Alu 96 296 -17 288 252 122 84 chr12 33982451 33982551 -109803904 - MER91C DNA MER1_type -1 139 31 2351 76 3 0 chr12 33982551 33982852 -109803603 + AluSg SINE Alu 1 302 -8 288 252 122 84 chr12 33982852 33982882 -109803573 - MER91C DNA MER1_type -109 31 4 4036 138 13 6 chr12 33983606 33984237 -109802218 - MER41B LTR ERV1 0 635 1 1501 152 53 11 chr12 33984482 33984765 -109801690 - AluJo SINE Alu -15 297 3 819 308 53 32 chr12 33985437 33985775 -109800680 - L2 LINE L2 0 3313 2969 2051 43 111 0 chr12 33985782 33986062 -109800393 + AluY SINE Alu 1 311 0 1237 126 5 0 chr12 33986062 33986253 -109800202 + AluSp SINE Alu 121 312 -1 2123 85 3 0 chr12 33986258 33986576 -109799879 + AluSp SINE Alu 1 319 0 2210 94 3 0 chr12 33986643 33986941 -109799514 + AluSq SINE Alu 1 299 -14 1216 124 0 0 chr12 33986941 33987119 -109799336 + AluSg/x SINE Alu 134 311 -1 2426 115 37 47 chr12 33987119 33987598 -109798857 - MER4E LTR ERV1 -316 326 1 336 177 73 10 chr12 33987609 33987705 -109798750 - L1MC4 LINE L1 -501 7541 7440 1836 142 13 13 chr12 33987725 33988035 -109798420 + AluSx SINE Alu 1 310 -2 441 126 63 84 chr12 33988085 33988180 -109798275 - U6 snRNA snRNA 0 107 15 2281 69 0 0 chr12 33988181 33988469 -109797986 + AluY SINE Alu 1 288 -23 482 258 0 13 chr12 33988472 33988627 -109797828 + (CATA)n Simple_repeat Simple_repeat 4 156 0 809 171 0 0 chr12 33988693 33988822 -109797633 + FLAM_C SINE Alu 1 129 -4 242 224 45 97 chr12 33988825 33988959 -109797496 - LTR40b LTR ERVL -7 455 329 473 242 150 65 chr12 33989163 33989469 -109796986 + LTR68 LTR ERV1 405 736 -4 1410 108 83 129 chr12 33989776 33990017 -109796438 - pTR5 LTR ERV1 -107 607 171 382 204 31 20 chr12 33990019 33990117 -109796338 - LTR30 LTR ERV1 -80 642 544 6122 132 58 117 chr12 33990117 33991480 -109794975 - pTR5 LTR ERV1 -413 2025 743 2837 141 24 12 chr12 33991606 33992195 -109794260 + MER4E LTR ERV1 3 766 0 359 238 68 122 chr12 33992300 33992340 -109794115 - MLT1J LTR MaLR -195 316 275 2478 127 53 14 chr12 33992340 33992773 -109793682 + LTR7 LTR ERV1 1 450 0 359 238 68 122 chr12 33992773 33993016 -109793439 - MLT1J LTR MaLR -236 275 47 285 29 0 0 chr12 33993016 33993050 -109793405 + (TG)n Simple_repeat Simple_repeat 2 35 0 5909 65 13 12 chr12 33993137 33993763 -109792692 + MER4E LTR ERV1 1 630 -136 2384 53 10 3 chr12 33993763 33994063 -109792392 + AluY SINE Alu 1 302 -9 5909 65 13 12 chr12 33994063 33994201 -109792254 + MER4E LTR ERV1 630 766 0 899 248 86 48 chr12 33994268 33994664 -109791791 + LTR16A1 LTR ERVL 47 457 0 375 188 89 0 chr12 33994671 33994772 -109791683 + L1MC/D LINE L1 5667 5776 -2032 2177 96 7 0 chr12 33994852 33995145 -109791310 - AluSx SINE Alu -17 295 1 2206 74 3 3 chr12 33995179 33995463 -109790992 - AluSx SINE Alu -17 295 12 234 264 299 0 chr12 33995482 33995569 -109790886 - MLT1H LTR MaLR -386 163 51 929 220 47 91 chr12 33995911 33996007 -109790448 - Charlie2 DNA MER1_type -93 2769 2670 2006 111 0 4 chr12 33996007 33996286 -109790169 + AluSg SINE Alu 1 278 -32 180 0 0 0 chr12 33996286 33996306 -109790149 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 929 220 47 91 chr12 33996306 33996601 -109789854 - Charlie2 DNA MER1_type -191 2671 2403 2367 70 0 0 chr12 33996601 33996902 -109789553 - AluY SINE Alu -10 301 1 929 220 47 91 chr12 33996902 33997022 -109789433 - Charlie2 DNA MER1_type -459 2403 2279 931 186 15 15 chr12 33997168 33997372 -109789083 - AluSx SINE Alu -100 212 9 1356 190 158 14 chr12 33997424 33997855 -109788600 - L1MC4 LINE L1 -1 8041 7549 2459 45 2 134 chr12 33997855 33998251 -109788204 - MER4E LTR ERV1 0 766 423 2123 98 7 0 chr12 33998252 33998548 -109787907 + AluSc SINE Alu 1 298 -11 231 93 111 19 chr12 33998566 33998600 -109787855 + Alu SINE Alu 6 44 -255 255 128 0 0 chr12 33998600 33998639 -109787816 + Alu SINE Alu 1 39 -264 2143 104 3 0 chr12 33998640 33998938 -109787517 + AluSq SINE Alu 1 299 -14 1117 133 0 0 chr12 33998938 33999103 -109787352 + AluSg/x SINE Alu 134 298 -14 2434 112 37 49 chr12 33999103 33999583 -109786872 - MER4E LTR ERV1 -316 326 1 336 177 73 10 chr12 33999594 33999690 -109786765 - L1MC4 LINE L1 -501 7541 7440 1836 142 13 13 chr12 33999710 34000020 -109786435 + AluSx SINE Alu 1 310 -2 447 126 63 84 chr12 34000070 34000165 -109786290 - U6 snRNA snRNA 0 107 15 2410 69 0 0 chr12 34000166 34000454 -109786001 + AluY SINE Alu 1 288 -23 506 256 0 12 chr12 34000454 34000614 -109785841 + (CATA)n Simple_repeat Simple_repeat 3 160 0 805 171 0 0 chr12 34000680 34000809 -109785646 + FLAM_C SINE Alu 1 129 -4 245 224 45 97 chr12 34000812 34000946 -109785509 - LTR40b LTR ERVL -7 455 329 476 242 150 65 chr12 34001150 34001456 -109784999 + LTR68 LTR ERV1 405 736 -4 1422 107 46 18 chr12 34001763 34002004 -109784451 - pTR5 LTR ERV1 -107 607 171 375 204 31 20 chr12 34002006 34002104 -109784351 - LTR30 LTR ERV1 -80 642 544 5984 132 58 117 chr12 34002104 34003467 -109782988 - pTR5 LTR ERV1 -413 2025 743 2845 141 24 12 chr12 34003593 34004182 -109782273 + MER4E LTR ERV1 3 766 0 362 238 68 122 chr12 34004287 34004327 -109782128 - MLT1J LTR MaLR -195 316 275 2463 127 53 14 chr12 34004327 34004760 -109781695 + LTR7 LTR ERV1 1 450 0 362 238 68 122 chr12 34004760 34005003 -109781452 - MLT1J LTR MaLR -236 275 47 303 28 0 0 chr12 34005003 34005039 -109781416 + (TG)n Simple_repeat Simple_repeat 2 37 0 5927 65 13 12 chr12 34005126 34005752 -109780703 + MER4E LTR ERV1 1 630 -136 2512 57 10 3 chr12 34005752 34006053 -109780402 + AluY SINE Alu 1 303 -8 5927 65 13 12 chr12 34006053 34006191 -109780264 + MER4E LTR ERV1 630 766 0 870 248 86 48 chr12 34006258 34006654 -109779801 + LTR16A1 LTR ERVL 47 457 0 381 188 89 0 chr12 34006661 34006762 -109779693 + L1MC/D LINE L1 5667 5776 -2032 2304 96 7 0 chr12 34006842 34007135 -109779320 - AluSx SINE Alu -17 295 1 2448 78 3 0 chr12 34007169 34007463 -109778992 - AluSx SINE Alu -17 295 1 37 23 0 0 chr12 34007466 34007510 -109778945 + AT_rich Low_complexity Low_complexity 1 44 0 2031 138 7 3 chr12 34007510 34007800 -109778655 + AluJb SINE Alu 1 291 -21 2312 94 0 10 chr12 34007863 34008171 -109778284 + AluY SINE Alu 1 305 -6 298 285 121 14 chr12 34008438 34008645 -109777810 + L2 LINE L2 1746 1974 -1340 781 153 76 0 chr12 34008724 34008868 -109777587 - AluJo/FRAM SINE Alu -11 291 137 1321 91 0 138 chr12 34008871 34009073 -109777382 - AluSg/x SINE Alu -7 303 141 2268 120 0 0 chr12 34009073 34009374 -109777081 - AluSx SINE Alu -11 301 1 1321 91 0 138 chr12 34009374 34009425 -109777030 - AluSg/x SINE Alu -169 141 85 1862 152 7 7 chr12 34009495 34009791 -109776664 - AluJb SINE Alu -16 296 1 1978 110 24 14 chr12 34009803 34010142 -109776313 - AluSx SINE Alu 0 312 1 628 339 111 36 chr12 34010186 34010792 -109775663 + L2 LINE L2 2403 3075 -238 1866 159 21 7 chr12 34010792 34011081 -109775374 + AluJb SINE Alu 1 293 -19 628 339 111 36 chr12 34011081 34011306 -109775149 + L2 LINE L2 3075 3282 -31 2192 97 7 0 chr12 34011415 34011713 -109774742 - AluY SINE Alu -11 300 1 1164 123 6 0 chr12 34011853 34012015 -109774440 + AluSc SINE Alu 127 289 -20 1928 143 7 10 chr12 34012023 34012323 -109774132 + AluJo SINE Alu 6 304 -8 217 383 45 13 chr12 34012332 34012486 -109773969 + L2 LINE L2 2915 3073 -199 201 232 29 14 chr12 34012550 34012619 -109773836 + (TTTG)n Simple_repeat Simple_repeat 3 72 0 545 226 26 17 chr12 34012625 34012740 -109773715 + MER58A DNA MER1_type 1 116 0 277 102 0 153 chr12 34012737 34012758 -109773697 + MER58A DNA MER1_type 174 197 -2223 * 2245 120 0 0 chr12 34012758 34013057 -109773398 - AluSq SINE Alu -14 299 1 277 102 0 153 chr12 34013057 34013094 -109773361 + MER58A DNA MER1_type 197 223 -1 541 256 100 6 chr12 34013203 34013363 -109773092 - MIR SINE MIR -41 221 47 409 65 32 16 chr12 34013388 34013450 -109773005 - Alu SINE Alu -4 297 235 1688 201 92 38 chr12 34013488 34013966 -109772489 + L1MC4 LINE L1 7213 7716 -326 2040 120 28 0 chr12 34014011 34014302 -109772153 + AluSx SINE Alu 1 299 -13 925 254 133 59 chr12 34014313 34014717 -109771738 + MLT1H LTR MaLR 73 515 -34 2069 99 11 14 chr12 34014717 34015039 -109771416 - AluSg SINE Alu 0 321 1 925 254 133 59 chr12 34015039 34015077 -109771378 + MLT1H LTR MaLR 515 549 0 2334 114 0 9 chr12 34015370 34015685 -109770770 - AluSx SINE Alu 0 312 1 1786 156 58 0 chr12 34016263 34016558 -109769897 - AluJb SINE Alu 0 312 1 362 288 69 56 chr12 34017849 34018155 -109768300 - MER68 LTR ERV1 -72 490 181 1649 168 33 7 chr12 34018486 34018802 -109767653 - AluSx SINE Alu 0 325 3 2515 65 0 0 chr12 34019091 34019383 -109767072 + AluSq SINE Alu 1 292 -21 2198 114 0 10 chr12 34019400 34019698 -109766757 + AluSx SINE Alu 3 297 -15 2040 159 15 40 chr12 34019769 34020164 -109766291 - Tigger1 DNA MER2_type -15 2403 2019 6227 149 37 27 chr12 34020166 34021692 -109764763 - L1PB2 LINE L1 -3 6148 4637 2644 52 0 0 chr12 34021692 34021999 -109764456 - AluY SINE Alu -4 307 1 6227 149 37 27 chr12 34021999 34022271 -109764184 - L1PB2 LINE L1 -1514 4637 4369 305 62 21 0 chr12 34022271 34022319 -109764136 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 6227 149 37 27 chr12 34022319 34022627 -109763828 - L1PB2 LINE L1 -1782 4369 4019 6018 112 28 50 chr12 34022629 34023406 -109763049 - Tigger1 DNA MER2_type -376 2042 1250 1800 166 3 7 chr12 34023406 34023695 -109762760 + AluJb SINE Alu 1 288 -24 6018 112 28 50 chr12 34023695 34023798 -109762657 - Tigger1 DNA MER2_type -1168 1250 1183 2099 148 0 0 chr12 34023798 34024101 -109762354 - AluSx SINE Alu -9 303 1 6018 112 28 50 chr12 34024101 34024208 -109762247 - Tigger1 DNA MER2_type -1235 1183 1075 2228 106 0 0 chr12 34024328 34024647 -109761808 + AluSx SINE Alu 1 319 0 2185 106 3 10 chr12 34024651 34024975 -109761480 + AluSq SINE Alu 1 313 0 1091 183 50 5 chr12 34024976 34025178 -109761277 + MER61E LTR ERV1 355 565 -4 515 273 67 64 chr12 34025191 34025447 -109761008 - MER68 LTR ERV1 -158 447 148 6409 150 5 24 chr12 34025778 34026153 -109760302 + L1PB2 LINE L1 4125 4506 -1645 2138 124 0 0 chr12 34026153 34026470 -109759985 + AluSx SINE Alu 1 312 0 6409 150 5 24 chr12 34026470 34027007 -109759448 + L1PB2 LINE L1 4506 5052 -1099 2272 89 17 0 chr12 34027007 34027309 -109759146 + AluSx SINE Alu 6 312 0 6409 150 5 24 chr12 34027309 34027352 -109759103 + L1PB2 LINE L1 5052 5094 -1057 2133 136 0 0 chr12 34027352 34027647 -109758808 + AluSg SINE Alu 1 295 -15 6409 150 5 24 chr12 34027647 34028761 -109757694 + L1PB2 LINE L1 5094 6151 0 1879 158 3 13 chr12 34028774 34029072 -109757383 + AluSx SINE Alu 1 295 -17 1620 172 61 11 chr12 34029218 34029497 -109756958 - AluSx SINE Alu -19 293 1 921 156 0 0 chr12 34029497 34029632 -109756823 - AluSq/x SINE Alu -177 135 1 851 190 41 10 chr12 34029730 34029936 -109756519 - MER61D LTR ERV1 -17 750 338 2138 123 0 43 chr12 34030981 34031307 -109755148 + AluSx SINE Alu 1 312 0 279 0 0 0 chr12 34031450 34031481 -109754974 + (TG)n Simple_repeat Simple_repeat 2 32 0 1964 133 30 0 chr12 34031642 34031952 -109754503 - AluSc SINE Alu 0 318 1 749 256 96 41 chr12 34032036 34032329 -109754126 - Charlie2 DNA MER1_type -2553 309 1 2050 106 0 14 chr12 34032814 34033098 -109753357 - AluSx SINE Alu 0 312 33 2234 83 24 3 chr12 34033108 34033397 -109753058 - AluSc SINE Alu -14 295 1 2059 123 9 25 chr12 34033803 34034119 -109752336 + AluSx SINE Alu 1 311 -1 2444 65 0 36 chr12 34034190 34034499 -109751956 - AluY SINE Alu -13 298 1 2123 84 0 75 chr12 34034502 34034834 -109751621 - AluSx SINE Alu -5 307 1 1867 170 73 3 chr12 34035183 34035524 -109750931 - MLT1A1 LTR MaLR 0 365 1 545 242 45 13 chr12 34035874 34036031 -109750424 + MIR SINE MIR 35 196 -66 254 289 13 13 chr12 34036043 34036119 -109750336 - MIR SINE MIR -183 79 4 1656 179 0 34 chr12 34036140 34036436 -109750019 + AluJo SINE Alu 1 286 -26 1215 90 0 13 chr12 34036707 34036862 -109749593 - AluSg SINE Alu -153 157 5 1662 170 16 42 chr12 34037833 34038023 -109748432 - AluJo SINE Alu -14 298 117 207 0 0 0 chr12 34038023 34038046 -109748409 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1662 170 16 42 chr12 34038046 34038161 -109748294 - AluJo SINE Alu -195 117 1 429 124 0 112 chr12 34038161 34038250 -109748205 + Charlie5 DNA MER1_type 2505 2583 -29 2125 111 10 10 chr12 34038309 34038606 -109747849 - AluSg SINE Alu -13 297 1 882 21 0 0 chr12 34038637 34038734 -109747721 - AluYb8 SINE Alu -68 250 154 384 135 0 0 chr12 34038738 34038962 -109747493 + AluJ/FRAM SINE Alu 230 453 0 1075 223 9 4 chr12 34038974 34039203 -109747252 + AluJo SINE Alu 14 243 -69 508 85 0 73 chr12 34039260 34039342 -109747113 - AluSg SINE Alu -230 80 5 414 247 69 57 chr12 34039389 34039721 -109746734 - L1M4 LINE L1 -814 5332 4997 2246 62 0 106 chr12 34039908 34040248 -109746207 - AluSc SINE Alu -5 304 1 353 297 0 7 chr12 34040789 34040927 -109745528 - L1M4 LINE L1 -1602 4544 4408 914 204 0 0 chr12 34041027 34041189 -109745266 + FRAM SINE Alu 1 161 -15 248 214 0 0 chr12 34041361 34041403 -109745052 - L1MC4 LINE L1 -1148 6894 6853 2200 125 0 3 chr12 34041410 34041721 -109744734 - AluSg SINE Alu 0 310 1 1114 228 91 51 chr12 34041730 34042061 -109744394 + MER92A LTR ERV1 1 348 -64 2058 104 119 6 chr12 34042061 34042398 -109744057 + THE1C LTR MaLR 1 375 0 1114 228 91 51 chr12 34042398 34042417 -109744038 + MER92A LTR ERV1 348 365 -47 963 129 14 7 chr12 34042439 34042579 -109743876 + AluSq/x SINE Alu 1 141 -172 2070 122 3 24 chr12 34042623 34042978 -109743477 + AluSx SINE Alu 1 312 0 312 176 0 108 chr12 34042991 34043093 -109743362 - L1MC5 LINE L1 -1161 6800 6710 838 251 54 63 chr12 34043453 34043516 -109742939 - LTR40b LTR ERVL -1 461 399 2318 100 0 3 chr12 34043516 34043816 -109742639 - AluSx SINE Alu -13 299 1 838 251 54 63 chr12 34043816 34044086 -109742369 - LTR40b LTR ERVL -63 399 131 234 0 0 0 chr12 34044579 34044605 -109741850 + (ATG)n Simple_repeat Simple_repeat 2 27 0 2224 117 7 0 chr12 34045189 34045489 -109740966 + AluSp SINE Alu 1 302 -11 683 125 265 0 chr12 34045494 34045630 -109740825 + AluSg/x SINE Alu 129 300 -9 2395 74 10 0 chr12 34045687 34045986 -109740469 - AluY SINE Alu -9 302 1 1726 73 43 0 chr12 34045986 34046218 -109740237 + MER41A LTR ERV1 313 554 0 5111 130 58 3 chr12 34046303 34047063 -109739392 + MER41A-int LTR ERV1 1 802 -5144 7985 127 50 32 chr12 34047063 34047107 -109739348 + MER41A-int LTR ERV1 2291 2333 -2682 2034 161 0 0 chr12 34047107 34047417 -109739038 - AluSx SINE Alu -2 310 1 7985 127 50 32 chr12 34047417 34048822 -109737633 + MER41A-int LTR ERV1 2333 3766 -1249 * 8906 100 29 7 chr12 34048820 34049905 -109736550 + MER41A-int LTR ERV1 4666 5784 -162 2077 113 0 7 chr12 34049905 34050213 -109736242 - AluSx SINE Alu 0 306 1 8906 100 29 7 chr12 34050213 34050378 -109736077 + MER41A-int LTR ERV1 5784 5944 -2 3922 113 11 0 chr12 34050378 34050926 -109735529 + MER41A LTR ERV1 1 554 0 741 198 117 25 chr12 34050926 34051124 -109735331 + L1MB4 LINE L1 5960 6174 -6 263 173 0 0 chr12 34051155 34051207 -109735248 + L1MB8 LINE L1 6122 6173 -5 410 283 142 31 chr12 34051871 34052097 -109734358 + Charlie2 DNA MER1_type 75 325 -2457 1157 196 20 12 chr12 34052101 34052351 -109734104 + Charlie2 DNA MER1_type 1857 2108 -754 2222 193 38 39 chr12 34052352 34052930 -109733525 - MER92B LTR ERV1 -1 635 1 2267 95 0 3 chr12 34052935 34053247 -109733208 - AluSx SINE Alu 0 311 1 256 200 290 0 chr12 34053265 34053365 -109733090 + Charlie2 DNA MER1_type 2147 2275 -587 21 0 0 0 chr12 34054094 34054115 -109732340 + AT_rich Low_complexity Low_complexity 1 21 0 2223 106 20 0 chr12 34054201 34054493 -109731962 - AluSq SINE Alu -13 300 3 2305 102 0 0 chr12 34054778 34055071 -109731384 - AluSg SINE Alu -17 293 1 1003 211 53 94 chr12 34055311 34055429 -109731026 + Charlie2 DNA MER1_type 2279 2400 -462 2443 73 3 0 chr12 34055429 34055729 -109730726 + AluY SINE Alu 1 301 -10 1003 211 53 94 chr12 34055729 34056024 -109730431 + Charlie2 DNA MER1_type 2400 2706 -156 180 0 0 0 chr12 34056024 34056044 -109730411 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2141 108 0 4 chr12 34056044 34056323 -109730132 - AluSg SINE Alu -32 278 1 1003 211 53 94 chr12 34056323 34056419 -109730036 + Charlie2 DNA MER1_type 2704 2769 -93 302 217 239 94 chr12 34056761 34056854 -109729601 + MLT1H LTR MaLR 51 129 -420 2295 91 0 16 chr12 34056854 34057190 -109729265 + AluSq SINE Alu 1 313 0 302 217 239 94 chr12 34057190 34057234 -109729221 + MLT1H LTR MaLR 129 208 -341 2259 85 0 4 chr12 34057259 34057570 -109728885 - AluSg SINE Alu 0 316 7 886 213 46 0 chr12 34057620 34057817 -109728638 + L1MD3 LINE L1 7782 7987 -8 2568 106 19 3 chr12 34058025 34058394 -109728061 - THE1C LTR MaLR 0 375 1 2597 193 30 8 chr12 34058592 34059121 -109727334 + L1MC4a LINE L1 7268 7808 0 439 183 39 19 chr12 34059209 34059313 -109727142 + MER5B DNA MER1_type 68 173 -5 1226 290 47 34 chr12 34059577 34060218 -109726237 - L1ME3 LINE L1 -211 5951 5303 2150 126 7 7 chr12 34060221 34060531 -109725924 - AluSx SINE Alu -2 310 1 612 221 32 11 chr12 34060531 34060721 -109725734 - L1ME3 LINE L1 -834 5312 5119 21 36 0 0 chr12 34060773 34060801 -109725654 + AT_rich Low_complexity Low_complexity 1 28 0 2530 74 0 3 chr12 34060897 34061207 -109725248 + AluY SINE Alu 1 309 -2 1693 176 3 23 chr12 34061311 34061618 -109724837 + AluJo SINE Alu 1 301 -11 1305 92 0 0 chr12 34061662 34061825 -109724630 + AluSg/x SINE Alu 144 306 -6 2348 51 0 64 chr12 34061827 34062140 -109724315 + AluY SINE Alu 1 293 -18 1975 230 27 34 chr12 34062150 34062813 -109723642 - L1MC/D LINE L1 -753 5393 5038 263 71 24 0 chr12 34062813 34062855 -109723600 + MADE1 DNA Mariner 2 44 -36 2122 94 7 44 chr12 34062884 34063181 -109723274 - AluSx SINE Alu -26 286 1 311 301 48 6 chr12 34063207 34063373 -109723082 - L1MC/D LINE L1 -1116 5030 4858 866 143 0 8 chr12 34063687 34063820 -109722635 + FLAM_A SINE Alu 2 133 0 2344 91 0 3 chr12 34063893 34064191 -109722264 + AluSg1 SINE Alu 1 297 -12 2280 207 35 42 chr12 34064260 34064557 -109721898 + L1M4 LINE L1 4263 4561 -1585 1721 170 0 53 chr12 34064557 34064697 -109721758 + AluJo SINE Alu 1 147 -165 2171 121 0 16 chr12 34064697 34065011 -109721444 + AluSx SINE Alu 1 309 -3 1721 170 0 53 chr12 34065011 34065188 -109721267 + AluJo SINE Alu 147 301 -11 2280 207 35 42 chr12 34065188 34065372 -109721083 + L1M4 LINE L1 4561 4740 -1406 2089 113 38 0 chr12 34065372 34065663 -109720792 + AluSx SINE Alu 1 302 -10 2280 207 35 42 chr12 34065663 34065817 -109720638 + L1M4 LINE L1 4740 4894 -1252 949 185 42 16 chr12 34065822 34066011 -109720444 - MER93b LTR ERV1 -168 205 12 2197 110 0 0 chr12 34066013 34066326 -109720129 - AluSx SINE Alu 0 313 1 360 222 111 16 chr12 34066348 34066474 -109719981 - MIR SINE MIR -103 159 22 1746 161 40 7 chr12 34066623 34066922 -109719533 - AluJb SINE Alu -3 309 1 723 183 124 112 chr12 34066984 34067340 -109719115 + LTR37A LTR ERV1 3 362 -64 279 0 0 0 chr12 34067508 34067539 -109718916 + (CA)n Simple_repeat Simple_repeat 2 32 0 4697 181 24 23 chr12 34067666 34068526 -109717929 - MER21B LTR ERV1 -2 861 1 2511 68 0 0 chr12 34068715 34069022 -109717433 - AluY SINE Alu -4 307 1 2432 77 0 10 chr12 34069024 34069334 -109717121 - AluY SINE Alu -4 307 1 2313 104 10 0 chr12 34069335 34069634 -109716821 - AluSx SINE Alu -10 302 1 239 204 0 0 chr12 34069853 34069907 -109716548 - AluSp/q SINE Alu -68 235 182 3115 160 22 61 chr12 34069907 34070544 -109715911 - LTR9 LTR ERV1 0 612 1 1186 151 0 11 chr12 34070546 34070731 -109715724 - AluJb SINE Alu -129 183 1 475 202 11 51 chr12 34071126 34071209 -109715246 + MER34 LTR ERV1 11 70 -472 4068 189 50 18 chr12 34071209 34072008 -109714447 - LTR1B LTR ERV1 -1 825 1 475 202 11 51 chr12 34072008 34072075 -109714380 + MER34 LTR ERV1 70 138 -404 938 182 6 0 chr12 34072075 34072240 -109714215 - AluJb SINE Alu -6 306 141 1063 169 25 108 chr12 34072243 34072254 -109714201 + MER34B LTR ERV1 113 123 -442 2404 68 0 17 chr12 34072254 34072549 -109713906 - AluY SINE Alu -19 292 3 1063 169 25 108 chr12 34072549 34072816 -109713639 + MER34B LTR ERV1 123 368 -197 260 272 63 7 chr12 34072819 34072922 -109713533 - LTR23 LTR ERV1 -14 738 331 333 308 19 0 chr12 34073648 34073752 -109712703 + GA-rich Low_complexity Low_complexity 2 107 0 834 156 0 8 chr12 34073934 34074062 -109712393 + FLAM_C SINE Alu 1 127 -16 25 0 0 0 chr12 34074062 34074087 -109712368 + AT_rich Low_complexity Low_complexity 1 25 0 304 252 58 0 chr12 34074171 34074274 -109712181 + MER34B LTR ERV1 359 467 -98 2312 52 3 24 chr12 34074276 34074588 -109711867 + AluY SINE Alu 1 306 0 2473 72 3 19 chr12 34074603 34074921 -109711534 + AluSp SINE Alu 1 313 0 371 209 36 45 chr12 34074929 34075039 -109711416 + MER34 LTR ERV1 431 539 -3 913 260 63 85 chr12 34075265 34075864 -109710591 - PABL_B LTR ERV1 0 667 82 377 192 173 77 chr12 34076125 34076281 -109710174 + MLT1H LTR MaLR 1 171 -378 5011 150 32 16 chr12 34077280 34077590 -109708865 - MER4D LTR ERV1 -8 895 591 2540 60 3 22 chr12 34077590 34077906 -109708549 + AluY SINE Alu 1 310 -1 5011 150 32 16 chr12 34077906 34078476 -109707979 - MER4D LTR ERV1 -312 591 1 320 226 199 77 chr12 34078636 34078817 -109707638 + MLT1H LTR MaLR 350 552 -3 2250 115 0 3 chr12 34079131 34079436 -109707019 - AluSq SINE Alu -9 304 1 41 36 0 0 chr12 34079506 34079561 -109706894 + AT_rich Low_complexity Low_complexity 1 55 0 2319 101 0 0 chr12 34079569 34079866 -109706589 - AluSx SINE Alu -15 297 1 286 240 0 27 chr12 34080012 34080087 -109706368 - MIR SINE MIR -1 261 189 890 227 9 70 chr12 34080094 34080269 -109706186 - MER58A DNA MER1_type -2205 215 56 2262 101 0 0 chr12 34080269 34080555 -109705900 + AluSc SINE Alu 2 287 -22 890 227 9 70 chr12 34080555 34080608 -109705847 - MER58A DNA MER1_type -2364 56 1 503 210 75 70 chr12 34080609 34080795 -109705660 - MIR SINE MIR -65 197 11 1353 179 8 0 chr12 34080833 34081068 -109705387 - AluJb SINE Alu -5 307 71 232 250 0 0 chr12 34081068 34081120 -109705335 + LTR30 LTR ERV1 1 52 -670 1850 89 150 231 chr12 34081124 34081750 -109704705 + LTR12 LTR ERV1 57 579 -135 456 176 0 0 chr12 34081752 34081826 -109704629 - AluS SINE Alu -239 74 1 2055 112 0 37 chr12 34081832 34082153 -109704302 - AluSg SINE Alu -1 309 1 517 240 174 15 chr12 34082178 34082374 -109704081 - L1MC4a LINE L1 -1897 5911 5685 21 0 0 0 chr12 34082417 34082438 -109704017 + AT_rich Low_complexity Low_complexity 1 21 0 1627 163 0 66 chr12 34082443 34082576 -109703879 + AluSq SINE Alu 1 141 -172 2520 62 0 13 chr12 34082576 34082884 -109703571 + AluY SINE Alu 1 304 -7 1627 163 0 66 chr12 34082884 34083070 -109703385 + AluSq SINE Alu 141 299 -14 827 207 141 75 chr12 34083073 34083421 -109703034 - LTR33A LTR ERVL -150 373 3 3112 47 8 3 chr12 34083450 34083832 -109702623 + L1PA8 LINE L1 5788 6171 -1 318 217 87 6 chr12 34083917 34084050 -109702405 - L1MC4a LINE L1 -697 5469 5335 252 304 20 39 chr12 34084876 34084978 -109701477 + L2 LINE L2 3204 3303 -10 3209 97 30 49 chr12 34085560 34086067 -109700388 + LOR1a LTR ERV1 1 497 0 475 82 14 41 chr12 34086148 34086221 -109700234 - L1M3 LINE L1 -428 5752 5682 1499 224 52 12 chr12 34086529 34086873 -109699582 - MLT1A2 LTR MaLR 0 374 17 657 285 61 123 chr12 34087198 34087654 -109698801 + ERVL LTR ERVL 1906 2333 -3431 542 150 17 83 chr12 34087655 34087726 -109698729 + L1MB4 LINE L1 6069 6130 -50 2471 60 0 10 chr12 34087726 34087860 -109698595 + AluY SINE Alu 1 135 -176 2464 50 3 14 chr12 34087860 34088157 -109698298 + AluY SINE Alu 1 294 -17 2471 60 0 10 chr12 34088157 34088323 -109698132 + AluY SINE Alu 135 298 -13 542 150 17 83 chr12 34088323 34088371 -109698084 + L1MB4 LINE L1 6130 6180 0 1984 138 0 3 chr12 34088547 34088870 -109697585 + AluSx SINE Alu 1 322 0 530 274 99 31 chr12 34089489 34089712 -109696743 + MIR SINE MIR 23 260 -2 2457 81 7 0 chr12 34090042 34090340 -109696115 + AluSq SINE Alu 1 300 -13 261 295 0 0 chr12 34090354 34090432 -109696023 + L1M4 LINE L1 2853 2930 -3216 26 0 0 0 chr12 34090454 34090480 -109695975 + AT_rich Low_complexity Low_complexity 1 26 0 2225 123 113 38 chr12 34090507 34090853 -109695602 + MSTA LTR MaLR 1 382 -46 2251 109 3 0 chr12 34090853 34091147 -109695308 + AluSp SINE Alu 10 304 -9 2225 123 113 38 chr12 34091147 34091198 -109695257 + MSTA LTR MaLR 382 428 0 1882 154 3 14 chr12 34091217 34091510 -109694945 + AluJo SINE Alu 1 290 -22 330 26 0 0 chr12 34091560 34091599 -109694856 + (CA)n Simple_repeat Simple_repeat 2 40 0 450 167 13 26 chr12 34091599 34091677 -109694778 - MER2 DNA MER2_type -2 343 267 2134 87 31 3 chr12 34092069 34092356 -109694099 + AluSg SINE Alu 1 295 -15 689 142 14 71 chr12 34092441 34092582 -109693873 - FLAM_C SINE Alu 0 133 1 2009 134 0 7 chr12 34092586 34092889 -109693566 - AluSx SINE Alu 0 301 1 2254 147 16 21 chr12 34092933 34093308 -109693147 - THE1C LTR MaLR 0 375 3 270 95 0 0 chr12 34093310 34093352 -109693103 - THE1C-int LTR MaLR 0 1580 1539 2240 109 6 6 chr12 34093356 34093668 -109692787 - AluSx SINE Alu 0 312 1 300 319 22 22 chr12 34093672 34093810 -109692645 + HAL1 LINE L1 144 281 -2226 882 284 90 35 chr12 34093870 34094324 -109692131 + HAL1 LINE L1 476 954 -1553 1992 107 42 7 chr12 34094367 34094656 -109691799 + AluSc SINE Alu 1 299 -10 926 97 0 0 chr12 34094656 34094770 -109691685 + AluSq/x SINE Alu 1 114 -199 1358 233 81 40 chr12 34095292 34095596 -109690859 + HAL1 LINE L1 986 1321 -1186 2181 116 3 3 chr12 34095596 34095899 -109690556 + AluSx SINE Alu 1 303 -9 1358 233 81 40 chr12 34095899 34096113 -109690342 + HAL1 LINE L1 1321 1525 -982 240 147 73 0 chr12 34096533 34096601 -109689854 + GA-rich Low_complexity Low_complexity 3 75 0 396 208 13 0 chr12 34096725 34096802 -109689653 - MER58 DNA MER1_type -2312 108 31 201 138 0 0 chr12 34096856 34096885 -109689570 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 583 186 23 23 chr12 34096888 34096910 -109689545 + GA-rich Low_complexity Low_complexity 1 22 -155 2191 117 7 0 chr12 34096910 34097209 -109689246 + AluSx SINE Alu 1 301 -11 583 186 23 23 chr12 34097209 34097363 -109689092 + GA-rich Low_complexity Low_complexity 21 177 0 1166 173 50 167 chr12 34098130 34098246 -109688209 - L1ME1 LINE L1 -193 5973 5845 1973 131 41 0 chr12 34098246 34098537 -109687918 - AluSq SINE Alu -10 303 1 1166 173 50 167 chr12 34098537 34098900 -109687555 - L1ME1 LINE L1 -321 5845 5550 957 245 85 60 chr12 34098903 34098971 -109687484 + MSTC LTR MaLR 16 81 -347 1825 181 0 0 chr12 34098971 34099264 -109687191 + AluJo SINE Alu 1 293 -19 957 245 85 60 chr12 34099264 34099529 -109686926 + MSTC LTR MaLR 81 338 -90 2216 102 17 0 chr12 34099529 34099822 -109686633 + AluSx SINE Alu 3 300 -12 2509 72 0 3 chr12 34099822 34100128 -109686327 + AluY SINE Alu 1 306 -5 957 245 85 60 chr12 34100128 34100192 -109686263 + MSTC LTR MaLR 337 425 -3 491 205 85 2 chr12 34100197 34100336 -109686119 - L1ME1 LINE L1 -605 5559 5411 578 211 14 16 chr12 34100365 34100512 -109685943 - L1P5 LINE L1 -698 5456 5305 341 244 106 74 chr12 34100547 34100640 -109685815 - L1ME1 LINE L1 -3023 3123 3034 2228 109 0 3 chr12 34100640 34100953 -109685502 - AluSx SINE Alu 0 312 1 341 244 106 74 chr12 34100953 34101015 -109685440 - L1ME1 LINE L1 -3112 3034 2975 2578 37 0 0 chr12 34101015 34101311 -109685144 - AluY SINE Alu -15 296 1 341 244 106 74 chr12 34101311 34101371 -109685084 - L1ME1 LINE L1 -3171 2975 2900 900 152 13 25 chr12 34101435 34101593 -109684862 + Tigger1 DNA MER2_type 2 157 -2261 * 1071 175 53 5 chr12 34101582 34101788 -109684667 + Tigger1 DNA MER2_type 2202 2417 -1 362 249 153 84 chr12 34101789 34102036 -109684419 - L1ME1 LINE L1 -3348 2798 2519 2223 116 10 0 chr12 34102036 34102338 -109684117 - AluSp SINE Alu -8 305 1 362 249 153 84 chr12 34102338 34102436 -109684019 - L1ME1 LINE L1 -3627 2519 2429 315 275 59 77 chr12 34102486 34102582 -109683873 + L1MEc LINE L1 1380 1476 -4920 381 175 0 0 chr12 34102582 34102645 -109683810 - AluSg SINE Alu 0 301 239 2241 91 0 20 chr12 34102587 34102885 -109683570 - AluSx SINE Alu -15 297 6 315 275 59 77 chr12 34102645 34103038 -109683417 + L1MEc LINE L1 1476 1627 -4769 1740 121 0 0 chr12 34103038 34103277 -109683178 - AluSg SINE Alu -71 239 1 315 275 59 77 chr12 34103277 34103425 -109683030 + L1MEc LINE L1 1627 1776 -4620 2104 142 0 0 chr12 34103745 34104040 -109682415 + AluSx SINE Alu 1 295 -17 560 143 11 11 chr12 34104127 34104218 -109682237 - MLT1A2 LTR MaLR 0 374 284 1008 183 11 6 chr12 34104228 34104403 -109682052 - FRAM SINE Alu -7 169 1 2127 102 63 0 chr12 34104409 34104694 -109681761 - AluSg SINE Alu -7 303 1 1510 94 0 0 chr12 34104694 34104896 -109681559 + HERVFH19I LTR ERV1 5492 5693 -2026 3029 100 107 61 chr12 34104902 34105444 -109681011 + LTR4 LTR ERV1 30 596 0 15559 77 7 12 chr12 34105444 34106663 -109679792 + HERVFH19I LTR ERV1 5690 6899 -820 2106 103 0 38 chr12 34106663 34106979 -109679476 - AluSc SINE Alu 0 305 1 15559 77 7 12 chr12 34106979 34107797 -109678658 + HERVFH19I LTR ERV1 6899 7719 0 1458 183 18 1 chr12 34107797 34108196 -109678259 + LTR19A LTR ERV1 1 486 0 2126 130 7 3 chr12 34108581 34108880 -109677575 - AluSp SINE Alu -13 300 1 2256 97 7 3 chr12 34109570 34109868 -109676587 - AluSq SINE Alu -14 299 1 335 87 0 0 chr12 34109869 34109915 -109676540 + MADE1 DNA Mariner 30 75 -5 258 257 54 0 chr12 34109981 34110081 -109676374 + GA-rich Low_complexity Low_complexity 1 105 0 1823 53 0 22 chr12 34110219 34110445 -109676010 + AluY SINE Alu 76 296 -15 2671 51 0 0 chr12 34110451 34110762 -109675693 + AluY SINE Alu 1 311 0 1093 142 0 38 chr12 34110773 34110956 -109675499 - AluJo SINE Alu -44 268 93 2588 161 56 99 chr12 34110958 34111425 -109675030 - MER21B LTR ERV1 -312 551 112 838 110 0 0 chr12 34111425 34111543 -109674912 + AluJ SINE Alu 1 118 -184 2588 161 56 99 chr12 34111543 34111651 -109674804 - MER21B LTR ERV1 -751 112 1 2325 93 3 7 chr12 34111796 34112087 -109674368 - AluSg SINE Alu -20 290 1 1108 159 0 32 chr12 34112239 34112254 -109674201 + AluJ SINE Alu 120 134 -178 1995 139 0 31 chr12 34112254 34112388 -109674067 + AluSx SINE Alu 3 140 -172 2261 104 14 0 chr12 34112388 34112685 -109673770 + AluSg SINE Alu 1 301 -9 1995 139 0 31 chr12 34112685 34112867 -109673588 + AluSx SINE Alu 140 309 -3 1108 159 0 32 chr12 34112867 34113040 -109673415 + AluJ SINE Alu 134 302 -10 1907 153 20 7 chr12 34113644 34113944 -109672511 - AluJb SINE Alu -8 304 1 267 289 37 37 chr12 34114010 34114145 -109672310 + LTR19A-int LTR ERV1 3 137 -7400 266 229 16 0 chr12 34114239 34114300 -109672155 + MER34B LTR ERV1 504 565 0 2329 87 0 10 chr12 34114430 34114730 -109671725 - AluSg SINE Alu -9 301 5 256 257 88 68 chr12 34115214 34115362 -109671093 + LTR49-int LTR ERV1 1372 1522 -4809 1306 193 57 30 chr12 34115365 34115661 -109670794 - AluJb SINE Alu -8 304 1 279 181 48 48 chr12 34116004 34116109 -109670346 + LTR49-int LTR ERV1 1290 1394 -4937 51 31 0 0 chr12 34116444 34116509 -109669946 + AT_rich Low_complexity Low_complexity 1 65 0 2053 137 23 0 chr12 34116628 34116927 -109669528 + AluSx SINE Alu 2 307 -5 289 245 133 0 chr12 34117029 34117127 -109669328 + LTR49-int LTR ERV1 1523 1633 -4698 704 153 0 0 chr12 34117147 34117258 -109669197 + AluSg/x SINE Alu 187 297 -15 265 159 0 63 chr12 34117322 34117385 -109669070 - LTR49-int LTR ERV1 -2377 2494 2436 732 180 57 35 chr12 34117388 34117682 -109668773 - LTR49-int LTR ERV1 -3202 3129 856 605 252 0 0 chr12 34117700 34117827 -109668628 - FLAM_A SINE Alu -3 130 4 416 274 40 74 chr12 34117847 34118022 -109668433 - LTR49-int LTR ERV1 -4231 2100 1932 933 131 0 15 chr12 34118031 34118168 -109668287 + AluJo SINE Alu 1 135 -177 566 215 93 45 chr12 34118213 34118411 -109668044 - LTR49-int LTR ERV1 -4391 545 351 1501 152 22 40 chr12 34118425 34118702 -109667753 + AluJo SINE Alu 30 301 -11 3931 158 17 54 chr12 34118777 34119029 -109667426 + MER84-int LTR ERV1 4267 4527 -1804 2346 94 0 7 chr12 34119029 34119338 -109667117 - AluY SINE Alu -4 307 1 3931 158 17 54 chr12 34119338 34119398 -109667057 + MER84-int LTR ERV1 4527 4588 -1743 1836 156 0 20 chr12 34119398 34119693 -109666762 - AluJo SINE Alu -12 300 12 3931 158 17 54 chr12 34119693 34120193 -109666262 + MER84-int LTR ERV1 4588 5050 -1281 274 220 70 20 chr12 34120199 34120299 -109666156 + MER84-int LTR ERV1 4274 4378 -576 1660 162 55 3 chr12 34120330 34120620 -109665835 + AluJb SINE Alu 1 305 -7 1357 139 14 96 chr12 34120859 34121140 -109665315 - MER61E LTR ERV1 -43 526 269 1003 174 48 48 chr12 34121214 34121421 -109665034 - LTR25 LTR ERV1 -340 454 248 804 149 6 77 chr12 34121409 34121577 -109664878 - MER61E LTR ERV1 -413 156 1 * 293 298 35 18 chr12 34122426 34122540 -109663915 + L1P LINE L1 4901 5016 -1130 207 0 0 0 chr12 34122731 34122754 -109663701 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1350 58 0 0 chr12 34122756 34122912 -109663543 - AluY SINE Alu -23 288 133 289 258 0 0 chr12 34122986 34123052 -109663403 - AluSp/q SINE Alu -20 283 218 204 149 0 0 chr12 34123084 34123131 -109663324 + (TC)n Simple_repeat Simple_repeat 1 47 0 538 72 0 0 chr12 34123158 34123227 -109663228 + AluSc SINE Alu 222 290 -19 306 0 0 0 chr12 34123227 34123261 -109663194 + (TA)n Simple_repeat Simple_repeat 2 35 0 29 0 0 0 chr12 34123467 34123496 -109662959 + AT_rich Low_complexity Low_complexity 1 29 0 768 181 0 0 chr12 34123599 34123732 -109662723 + FLAM_C SINE Alu 1 133 0 2571 75 0 0 chr12 34124140 34124448 -109662007 - AluY SINE Alu -3 308 1 1072 90 0 0 chr12 34124451 34124584 -109661871 - AluSp SINE Alu -180 133 1 1524 169 7 34 chr12 34124586 34124882 -109661573 - AluJb SINE Alu -16 296 9 236 250 13 26 chr12 34125074 34125150 -109661305 + LTR37B LTR ERV1 210 284 -184 245 241 31 93 chr12 34125162 34125324 -109661131 + L1ME4a LINE L1 1175 6083 -22 26 30 0 0 chr12 34125526 34125559 -109660896 + AT_rich Low_complexity Low_complexity 1 33 0 1453 71 0 112 chr12 34125898 34126143 -109660312 - AluSq SINE Alu 0 303 84 659 227 131 73 chr12 34126161 34126558 -109659897 - MER34 LTR ERV1 0 542 123 492 146 34 0 chr12 34126559 34126648 -109659807 - AluJb SINE Alu -43 269 178 279 333 17 6 chr12 34126897 34127074 -109659381 + GA-rich Low_complexity Low_complexity 1 179 0 * 392 309 6 32 chr12 34126961 34127278 -109659177 + G-rich Low_complexity Low_complexity 1 308 0 1845 159 38 19 chr12 34127338 34127703 -109658752 - THE1C LTR MaLR -1 374 3 684 191 22 51 chr12 34127704 34127804 -109658651 + Charlie4 DNA MER1_type 1789 1883 -78 1994 120 62 3 chr12 34127804 34128095 -109658360 + AluSx SINE Alu 1 308 -4 684 191 22 51 chr12 34128095 34128172 -109658283 + Charlie4 DNA MER1_type 1883 1961 0 446 191 95 137 chr12 34128288 34128456 -109657999 - MLT1J LTR MaLR -314 197 37 2058 144 0 0 chr12 34128475 34128773 -109657682 + AluSx SINE Alu 1 298 -14 2255 93 0 3 chr12 34128953 34129244 -109657211 + AluSg1 SINE Alu 1 290 -19 478 304 33 16 chr12 34129893 34130077 -109656378 - MIR SINE MIR -29 233 47 1462 194 4 4 chr12 34130536 34130784 -109655671 + AluJb SINE Alu 1 248 -64 745 165 0 0 chr12 34131011 34131126 -109655329 + FLAM_C SINE Alu 1 115 -18 32 26 0 0 chr12 34131132 34131171 -109655284 + AT_rich Low_complexity Low_complexity 1 39 0 382 292 28 0 chr12 34131592 34131736 -109654719 + G-rich Low_complexity Low_complexity 6 153 0 1905 174 74 56 chr12 34132227 34132310 -109654145 - LTR10A LTR ERV1 0 548 468 2218 57 68 0 chr12 34132310 34132590 -109653865 - AluY SINE Alu -11 300 2 1905 174 74 56 chr12 34132590 34132990 -109653465 - LTR10A LTR ERV1 -80 468 1 225 0 0 0 chr12 34133035 34133060 -109653395 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1578 136 46 50 chr12 34133064 34133344 -109653111 - AluJb SINE Alu -30 282 4 1793 141 7 4 chr12 34133354 34133624 -109652831 - AluSx SINE Alu -7 305 35 1227 152 70 152 chr12 34133624 34134112 -109652343 + LTR7 LTR ERV1 3 450 0 262 132 0 0 chr12 34134112 34134150 -109652305 - AluSx SINE Alu -259 41 4 2419 47 3 23 chr12 34134176 34134476 -109651979 + AluY SINE Alu 1 294 -17 1288 176 43 81 chr12 34134694 34135090 -109651365 - LTR24B LTR ERV1 -1 523 188 636 237 40 12 chr12 34135273 34135446 -109651009 + MER5A DNA MER1_type 12 189 0 21 0 0 0 chr12 34135766 34135787 -109650668 + GC_rich Low_complexity Low_complexity 1 21 0 25 102 0 0 chr12 34135864 34135952 -109650503 + GC_rich Low_complexity Low_complexity 1 88 0 673 254 110 13 chr12 34137541 34137777 -109648678 + MIR SINE MIR 3 261 -1 1657 148 60 54 chr12 34138170 34138468 -109647987 + AluSx SINE Alu 1 300 -12 1691 119 123 11 chr12 34139045 34139306 -109647149 + AluSg SINE Alu 1 290 -20 1966 84 80 7 chr12 34139313 34139588 -109646867 + AluSc SINE Alu 1 295 -14 3013 197 115 21 chr12 34139794 34140358 -109646097 - L1MB8 LINE L1 -18 6160 5492 2552 116 36 27 chr12 34140358 34140807 -109645648 - L1PA13 LINE L1 -1 6162 5710 3013 197 115 21 chr12 34140807 34141066 -109645389 - L1MB8 LINE L1 -686 5492 5259 433 206 29 0 chr12 34141086 34141188 -109645267 - L1MB8 LINE L1 -1297 4849 4745 1932 132 40 3 chr12 34141190 34141486 -109644969 - AluSx SINE Alu -5 307 1 1324 138 69 55 chr12 34141486 34141824 -109644631 + MER51A LTR ERV1 119 628 -6 1692 98 0 0 chr12 34141925 34142140 -109644315 + AluSc SINE Alu 86 300 -9 1521 95 40 14 chr12 34142287 34142509 -109643946 + MER30 DNA MER1_type 3 230 0 235 330 104 17 chr12 34143257 34143372 -109643083 + REP3 LTR ERV 190 314 -248 358 192 55 0 chr12 34143649 34143722 -109642733 - Tigger5 DNA MER2_type 0 2323 2247 244 213 147 13 chr12 34143728 34143803 -109642652 - Tigger5 DNA MER2_type -2031 292 208 1061 188 56 33 chr12 34143924 34144137 -109642318 - Tigger5 DNA MER2_type -2105 218 1 242 220 55 64 chr12 34144503 34144612 -109641843 + L1MC5 LINE L1 7661 7768 -193 2601 50 0 0 chr12 34144675 34144977 -109641478 - AluY SINE Alu -9 302 1 1422 191 47 47 chr12 34145172 34145471 -109640984 - AluJo SINE Alu -13 299 1 1385 169 8 8 chr12 34145508 34145745 -109640710 + AluJb SINE Alu 58 294 -18 1244 169 201 8 chr12 34145871 34146120 -109640335 - AluJb SINE Alu -15 297 1 1118 194 122 45 chr12 34146646 34146772 -109639683 - L1M4 LINE L1 -3540 2606 2491 2221 178 110 35 chr12 34146772 34147255 -109639200 + LTR44 LTR ERV1 1 519 0 1118 194 122 45 chr12 34147255 34147378 -109639077 - L1M4 LINE L1 -3655 2491 2379 2082 130 7 3 chr12 34147378 34147671 -109638784 - AluSq SINE Alu -19 294 1 1118 194 122 45 chr12 34147671 34147821 -109638634 - L1M4 LINE L1 -3767 2379 2175 1146 184 24 14 chr12 34147824 34148031 -109638424 + MER21B LTR ERV1 1 209 -654 533 176 0 0 chr12 34148052 34148143 -109638312 - MSTC LTR MaLR 0 428 338 2724 190 56 37 chr12 34148154 34148554 -109637901 + MER21B LTR ERV1 222 638 -225 2509 70 0 3 chr12 34148554 34148856 -109637599 + AluY SINE Alu 1 301 -10 2724 190 56 37 chr12 34148856 34149028 -109637427 + MER21B LTR ERV1 638 805 -58 25 31 0 0 chr12 34149059 34149091 -109637364 + AT_rich Low_complexity Low_complexity 1 32 0 340 207 0 0 chr12 34149482 34149540 -109636915 + Tigger2a DNA MER2_type 1 58 -376 849 182 75 0 chr12 34149543 34149702 -109636753 - FAM SINE Alu -4 171 1 1553 195 155 20 chr12 34150037 34150504 -109635951 - MER21B LTR ERV1 -66 797 19 1292 186 128 37 chr12 34150582 34150939 -109635516 - MLT1B LTR MaLR 0 467 3 299 200 97 74 chr12 34151167 34151223 -109635232 - L1MC3 LINE L1 0 7785 7732 2208 96 31 3 chr12 34151223 34151515 -109634940 + AluSg SINE Alu 1 300 -10 299 200 97 74 chr12 34151515 34151721 -109634734 - L1MC3 LINE L1 -53 7732 6062 977 274 150 35 chr12 34151737 34152442 -109634013 - L1ME3A LINE L1 -4 6166 5543 2204 149 20 68 chr12 34152442 34152689 -109633766 - Tigger2a DNA MER2_type -2275 433 216 1896 77 4 0 chr12 34152689 34152923 -109633532 + AluSg SINE Alu 55 289 -21 2204 149 20 68 chr12 34152923 34153130 -109633325 - Tigger2a DNA MER2_type -2492 216 1 977 274 150 35 chr12 34153130 34153422 -109633033 - L1ME3A LINE L1 -627 5543 5286 2125 95 0 20 chr12 34153422 34153718 -109632737 - AluSq SINE Alu -23 290 1 977 274 150 35 chr12 34153718 34154025 -109632430 - L1ME3A LINE L1 -884 5286 5015 1835 152 26 23 chr12 34154025 34154335 -109632120 - AluSx SINE Alu -1 311 1 977 274 150 35 chr12 34154335 34154405 -109632050 - L1ME3A LINE L1 -1155 5015 4500 2077 91 0 75 chr12 34154768 34155099 -109631356 - AluSc SINE Alu -2 307 2 2472 74 0 0 chr12 34155153 34155451 -109631004 - AluY SINE Alu -13 298 1 1000 184 110 9 chr12 34155452 34155670 -109630785 - MER21B LTR ERV1 -52 811 572 1547 159 3 70 chr12 34155774 34156088 -109630367 - AluJb SINE Alu -19 293 1 506 253 34 27 chr12 34156106 34156252 -109630203 - MER21B LTR ERV1 -619 244 98 2192 131 3 3 chr12 34156330 34156642 -109629813 - AluSx SINE Alu 0 312 1 688 268 19 62 chr12 34163795 34163951 -109622504 - MER58A DNA MER1_type -2197 223 76 2054 124 3 0 chr12 34163951 34164266 -109622189 - AluSx SINE Alu 0 316 1 688 268 19 62 chr12 34164266 34164317 -109622138 - MER58A DNA MER1_type -2344 76 24 233 322 240 0 chr12 34164336 34164482 -109621973 - MIR SINE MIR -56 206 26 1452 170 90 66 chr12 34164500 34164835 -109621620 - MER2 DNA MER2_type -1 343 1 921 273 84 51 chr12 34164996 34165606 -109620849 + L2 LINE L2 2671 3307 -6 2229 104 7 0 chr12 34165805 34166102 -109620353 + AluSp SINE Alu 1 299 -14 243 0 0 0 chr12 34166204 34166231 -109620224 + (CA)n Simple_repeat Simple_repeat 1 27 0 1119 200 49 4 chr12 34166668 34166699 -109619756 + MER46A DNA MER2_type 1 29 -2702 1966 137 3 7 chr12 34166699 34166998 -109619457 + AluSq SINE Alu 1 298 -15 1119 200 49 4 chr12 34166998 34167191 -109619264 + MER46A DNA MER2_type 29 235 -1 * 1663 144 57 57 chr12 34167191 34167363 -109619092 - Tigger3(Golem) DNA MER2_type -100 2928 2757 2000 134 0 0 chr12 34167363 34167647 -109618808 + AluSq SINE Alu 2 285 -28 1663 144 57 57 chr12 34167647 34167822 -109618633 - Tigger3(Golem) DNA MER2_type -270 2758 2581 824 228 23 12 chr12 34167822 34167993 -109618462 - AluSg/x SINE Alu -11 299 127 1615 133 32 18 chr12 34168094 34168379 -109618076 - AluSx SINE Alu -15 297 9 329 330 51 19 chr12 34168626 34168841 -109617614 + L1MEc LINE L1 1252 1473 -4923 21 0 0 0 chr12 34168974 34168995 -109617460 + AT_rich Low_complexity Low_complexity 1 21 0 1449 195 91 75 chr12 34169018 34169402 -109617053 + MLT1B LTR MaLR 1 390 0 26 50 0 0 chr12 34169476 34169516 -109616939 + AT_rich Low_complexity Low_complexity 1 40 0 400 292 70 55 chr12 34169646 34170246 -109616209 + L1M4 LINE L1 3667 4275 -1871 901 172 21 0 chr12 34170432 34170577 -109615878 - AluJo SINE Alu -164 148 1 1249 192 98 15 chr12 34170577 34170915 -109615540 - L1ME1 LINE L1 -227 5939 5574 2377 73 0 29 chr12 34170915 34171230 -109615225 + AluY SINE Alu 1 306 -5 312 236 17 90 chr12 34171556 34171734 -109614721 + AluSp SINE Alu 3 167 -136 260 183 66 22 chr12 34172133 34172270 -109614185 + (TA)n Simple_repeat Simple_repeat 1 143 0 2282 102 42 23 chr12 34173362 34173746 -109612709 - MER61-int LTR ERV1 -3024 2193 1803 2098 141 3 0 chr12 34173749 34174048 -109612407 - AluSx SINE Alu -12 300 1 377 143 0 0 chr12 34174088 34174151 -109612304 + LTR30 LTR ERV1 552 614 -108 1278 213 44 39 chr12 34174177 34174681 -109611774 - LTR10B LTR ERV1 -5 542 1 529 228 66 42 chr12 34174681 34174848 -109611607 - LTR10B-int LTR ERV1 0 6649 6479 2591 166 11 42 chr12 34175894 34176369 -109610086 - L1PB4 LINE L1 -10 6146 5687 1046 139 36 18 chr12 34176500 34176522 -109609933 + AluJo SINE Alu 114 134 -178 2312 92 13 0 chr12 34176522 34176828 -109609627 + AluSq SINE Alu 1 310 -3 1046 139 36 18 chr12 34176828 34176971 -109609484 + AluJo SINE Alu 134 282 -30 247 295 0 0 chr12 34177635 34177696 -109608759 + MIR SINE MIR 45 105 -157 1903 130 3 25 chr12 34177762 34178046 -109608409 - AluSx SINE Alu -34 278 1 296 224 153 10 chr12 34178046 34178144 -109608311 + MIR SINE MIR 92 203 -59 273 135 126 72 chr12 34178166 34178277 -109608178 - MER113 DNA MER1_type? -83 438 322 2251 77 20 3 chr12 34178956 34179255 -109607200 - AluSc SINE Alu -5 304 1 22 0 0 0 chr12 34179255 34179277 -109607178 + AT_rich Low_complexity Low_complexity 1 22 0 675 162 8 17 chr12 34179287 34179404 -109607051 - FLAM_C SINE Alu -27 116 1 27 0 0 0 chr12 34179490 34179517 -109606938 + AT_rich Low_complexity Low_complexity 1 27 0 2082 114 7 3 chr12 34179520 34179817 -109606638 + AluSq SINE Alu 1 298 -15 1854 106 4 4 chr12 34179820 34180094 -109606361 + AluY SINE Alu 2 275 -36 701 179 26 8 chr12 34180148 34180265 -109606190 - FLAM_C SINE Alu -23 120 2 647 185 74 0 chr12 34180311 34180446 -109606009 - L1MA9 LINE L1 0 6312 6168 2446 88 0 0 chr12 34180446 34180752 -109605703 - AluSp SINE Alu -7 306 1 788 134 8 8 chr12 34180892 34181019 -109605436 + L1M2 LINE L1 5141 5267 -879 1361 138 9 13 chr12 34181067 34181298 -109605157 + L1M2 LINE L1 5256 5485 -827 996 168 53 40 chr12 34181299 34181525 -109604930 + AluSx SINE Alu 1 229 -83 283 221 15 25 chr12 34181567 34181647 -109604808 + AluJ/FLAM SINE Alu 1 64 -238 609 284 87 73 chr12 34181780 34181924 -109604531 + ERVL LTR ERVL 3410 3551 -2213 2440 63 0 3 chr12 34181924 34182226 -109604229 + AluY SINE Alu 1 301 -10 609 284 87 73 chr12 34182226 34182451 -109604004 + ERVL LTR ERVL 3551 3784 -1980 512 194 10 20 chr12 34182509 34182607 -109603848 + FLAM_A SINE Alu 26 122 -20 833 312 110 15 chr12 34182817 34183505 -109602950 + ERVL LTR ERVL 4054 4822 -942 1793 166 16 7 chr12 34183505 34183813 -109602642 - AluJb SINE Alu -1 311 1 1859 148 41 29 chr12 34183837 34184181 -109602274 - L1MB7 LINE L1 -22 6162 5815 2284 104 7 0 chr12 34184181 34184489 -109601966 + AluSx SINE Alu 1 310 -2 2601 62 0 3 chr12 34184648 34184954 -109601501 + AluSq SINE Alu 1 305 -8 327 49 0 0 chr12 34184954 34184995 -109601460 + (TA)n Simple_repeat Simple_repeat 2 42 0 227 226 0 43 chr12 34184998 34185091 -109601364 + L1MC4 LINE L1 6615 6703 -1339 1044 151 0 0 chr12 34185100 34185279 -109601176 + (TA)n Simple_repeat Simple_repeat 1 179 0 1186 87 12 0 chr12 34185279 34185440 -109601015 + AluSq SINE Alu 135 297 -16 187 315 0 0 chr12 34185708 34185762 -109600693 + MIR3 SINE MIR 119 172 -36 737 282 105 61 chr12 34185962 34186015 -109600440 + L2 LINE L2 2862 2911 -402 2137 110 10 3 chr12 34186015 34186314 -109600141 - AluSx SINE Alu -11 301 1 737 282 105 61 chr12 34186314 34186604 -109599851 + L2 LINE L2 2911 3220 -93 2264 54 4 4 chr12 34186604 34186912 -109599543 - AluY SINE Alu 0 308 1 2766 154 13 48 chr12 34186915 34186972 -109599483 + MER84-int LTR ERV1 4381 4438 -1893 1935 150 0 10 chr12 34186972 34187266 -109599189 - AluJo SINE Alu -10 302 12 2766 154 13 48 chr12 34187266 34187766 -109598689 + MER84-int LTR ERV1 4438 5050 -1281 279 220 70 20 chr12 34187772 34187872 -109598583 + MER84-int LTR ERV1 4274 4378 -576 1673 159 55 3 chr12 34187903 34188193 -109598262 + AluJb SINE Alu 1 305 -7 1351 139 14 96 chr12 34188432 34188713 -109597742 - MER61E LTR ERV1 -43 526 269 1002 174 48 48 chr12 34188787 34188994 -109597461 - LTR25 LTR ERV1 -340 454 248 799 149 6 77 chr12 34188982 34189150 -109597305 - MER61E LTR ERV1 -413 156 1 * 291 258 53 73 chr12 34189999 34190150 -109596305 + L1P LINE L1 4901 5048 -1098 207 0 0 0 chr12 34190304 34190327 -109596128 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2471 59 0 0 chr12 34190329 34190617 -109595838 - AluY SINE Alu -23 288 1 704 72 0 0 chr12 34190830 34190913 -109595542 + FRAM SINE Alu 62 144 -32 2483 66 3 0 chr12 34190913 34191214 -109595241 - AluY SINE Alu -9 302 1 1753 122 0 8 chr12 34191268 34191531 -109594924 - MER2 DNA MER2_type -71 274 14 2571 77 0 0 chr12 34191610 34191921 -109594534 + AluY SINE Alu 1 311 0 313 271 141 56 chr12 34192144 34192338 -109594117 - L1M4 LINE L1 -1168 4978 4753 816 181 0 0 chr12 34192338 34192471 -109593984 - FLAM_C SINE Alu 0 133 1 313 271 141 56 chr12 34192471 34192545 -109593910 - L1M4 LINE L1 -1393 4753 4687 29 0 0 0 chr12 34192574 34192603 -109593852 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr12 34192805 34192827 -109593628 + (TA)n Simple_repeat Simple_repeat 2 23 0 1262 97 0 0 chr12 34192827 34192982 -109593473 - AluSc SINE Alu -22 287 133 2054 106 4 0 chr12 34193023 34193297 -109593158 + AluSx SINE Alu 29 303 -9 245 259 68 34 chr12 34193570 34193717 -109592738 - L1ME4a LINE L1 -1 6120 5969 2472 82 0 0 chr12 34193785 34194090 -109592365 - AluY SINE Alu -5 306 2 2046 105 49 0 chr12 34194092 34194377 -109592078 - AluSq SINE Alu -14 299 1 2379 95 0 0 chr12 34194427 34194731 -109591724 - AluY SINE Alu -7 304 1 279 252 122 84 chr12 34195271 34195301 -109591154 - MER91C DNA MER1_type -3 137 110 2460 76 3 0 chr12 34195301 34195602 -109590853 - AluSg SINE Alu -8 302 1 279 252 122 84 chr12 34195602 34195702 -109590753 - MER91C DNA MER1_type -30 110 2 1419 126 10 0 chr12 34196017 34196216 -109590239 - AluSq SINE Alu -17 296 96 2415 85 3 0 chr12 34198262 34198568 -109587887 - AluSq SINE Alu -6 307 1 251 125 172 0 chr12 34198726 34198790 -109587665 - L1ME4a LINE L1 0 6121 6047 2248 119 0 3 chr12 34198993 34199305 -109587150 - AluSq SINE Alu -2 311 1 1904 151 13 0 chr12 34199363 34199667 -109586788 + AluSg SINE Alu 1 308 -2 2374 52 13 7 chr12 34200005 34200314 -109586141 + AluY SINE Alu 1 311 0 410 181 103 35 chr12 34200384 34200500 -109585955 - MIR SINE MIR -42 220 97 726 193 22 30 chr12 34201097 34201232 -109585223 + MER94 DNA DNA 1 134 0 201 239 0 22 chr12 34201251 34201297 -109585158 + MIR SINE MIR 87 131 -77 1561 180 6 52 chr12 34201297 34201487 -109584968 - AluJb SINE Alu 0 312 142 2446 62 0 0 chr12 34201487 34201779 -109584676 - AluY SINE Alu -19 292 1 1561 180 6 52 chr12 34201779 34201915 -109584540 - AluJb SINE Alu -170 142 1 1641 156 3 36 chr12 34201917 34202219 -109584236 - AluJb SINE Alu -16 296 5 372 206 16 0 chr12 34202234 34202297 -109584158 + MER2 DNA MER2_type 280 343 -2 242 250 13 26 chr12 34202407 34202483 -109583972 + LTR37B LTR ERV1 210 284 -184 255 241 31 93 chr12 34202495 34202657 -109583798 + L1ME4a LINE L1 1175 6083 -22 26 30 0 0 chr12 34202859 34202892 -109583563 + AT_rich Low_complexity Low_complexity 1 33 0 1436 71 0 112 chr12 34203231 34203476 -109582979 - AluSq SINE Alu 0 303 84 722 235 126 66 chr12 34203494 34203890 -109582565 - MER34 LTR ERV1 0 542 123 912 159 0 0 chr12 34203891 34204029 -109582426 - AluJb SINE Alu -43 269 132 1082 233 74 19 chr12 34204052 34204361 -109582094 - PABL_B LTR ERV1 0 667 342 329 272 72 126 chr12 34204373 34204778 -109581677 - PABL_B LTR ERV1 -283 384 2 808 145 0 0 chr12 34204778 34204895 -109581560 - FLAM_C SINE Alu -16 117 1 340 242 11 0 chr12 34204896 34204987 -109581468 - MER34 LTR ERV1 -450 92 1 3134 136 101 92 chr12 34205081 34205622 -109580833 + LTR8 LTR ERV1 2 537 -154 1824 121 0 0 chr12 34205622 34205870 -109580585 + AluSg SINE Alu 62 309 -1 3134 136 101 92 chr12 34205870 34205971 -109580484 + LTR8 LTR ERV1 537 653 -38 1654 171 42 0 chr12 34205971 34206235 -109580220 + AluSx SINE Alu 1 275 -37 3134 136 101 92 chr12 34206235 34206275 -109580180 + LTR8 LTR ERV1 653 691 0 254 245 254 7 chr12 34206316 34206455 -109580000 + MIR SINE MIR 63 235 -27 791 237 131 64 chr12 34206509 34206867 -109579588 - MLT2F LTR ERVL -2 661 280 2968 144 59 42 chr12 34206908 34207419 -109579036 - MER21A LTR ERV1 -6 925 403 2245 99 0 10 chr12 34207419 34207731 -109578724 - AluSx SINE Alu 0 312 3 2968 144 59 42 chr12 34207731 34207760 -109578695 - MER21A LTR ERV1 -528 403 376 910 146 277 0 chr12 34207765 34207971 -109578484 - MER21A LTR ERV1 -667 264 2 684 266 51 21 chr12 34207972 34208209 -109578246 - MLT2F LTR ERVL -419 244 1 2136 65 79 7 chr12 34208330 34208609 -109577846 - AluY SINE Alu -12 299 1 382 266 11 0 chr12 34208674 34208768 -109577687 + MER34 LTR ERV1 1 95 -447 955 172 18 0 chr12 34208775 34208938 -109577517 + FRAM SINE Alu 1 164 -12 1905 136 3 46 chr12 34208939 34209263 -109577192 + AluJb SINE Alu 1 310 -2 869 252 38 106 chr12 34209294 34209767 -109576688 + MER34 LTR ERV1 102 542 0 862 123 19 45 chr12 34209789 34209943 -109576512 + FRAM SINE Alu 9 158 -18 1658 87 5 0 chr12 34210183 34210389 -109576066 - AluSq SINE Alu -100 213 7 1167 86 0 0 chr12 34210392 34210531 -109575924 - AluSc SINE Alu -168 141 3 1038 138 12 6 chr12 34210535 34210702 -109575753 - MER21A-int LTR ERV1 -150 7666 7499 2077 89 44 0 chr12 34210728 34211022 -109575433 + AluY SINE Alu 1 306 0 2271 90 7 0 chr12 34211037 34211326 -109575129 + AluSc SINE Alu 1 291 -18 911 295 50 45 chr12 34211472 34212090 -109574365 - HERV3 LTR ERV1 -1684 6072 5459 3550 76 13 2 chr12 34212090 34212538 -109573917 + MLT2A2 LTR ERVL 1 453 0 911 295 50 45 chr12 34212538 34212650 -109573805 - HERV3 LTR ERV1 -2297 5459 4624 970 91 8 8 chr12 34212658 34212790 -109573665 + AluSp SINE Alu 1 132 -181 2015 139 3 7 chr12 34212792 34213087 -109573368 + AluSx SINE Alu 1 294 -18 321 253 96 31 chr12 34213088 34213334 -109573121 - HERV3 LTR ERV1 -1728 5432 4733 916 259 44 45 chr12 34213503 34213939 -109572516 - HERV3 LTR ERV1 -2804 4952 4560 2070 105 10 7 chr12 34213941 34214235 -109572220 - AluSx SINE Alu -17 295 1 1337 288 55 74 chr12 34214235 34214412 -109572043 - HERV3 LTR ERV1 -1146 3908 3729 2173 131 0 6 chr12 34214412 34214724 -109571731 + AluSg SINE Alu 1 310 0 1337 288 55 74 chr12 34214724 34215726 -109570729 - HERV3 LTR ERV1 -1325 3729 2709 2264 128 0 0 chr12 34215726 34216032 -109570423 - AluSx SINE Alu -6 306 1 2178 128 0 0 chr12 34216037 34216343 -109570112 - AluSc SINE Alu -3 306 1 1337 288 55 74 chr12 34216343 34216406 -109570049 - HERV3 LTR ERV1 -2094 2960 2897 269 321 24 24 chr12 34216537 34216806 -109569649 - HERV3 LTR ERV1 -4901 3725 2640 2343 112 3 0 chr12 34217097 34217409 -109569046 - AluSp SINE Alu 0 313 1 607 298 25 47 chr12 34217418 34217737 -109568718 - HERV3 LTR ERV1 -4023 2653 2342 252 393 0 0 chr12 34217946 34218091 -109568364 - HERV3 LTR ERV1 -6487 1912 1768 517 328 30 26 chr12 34218327 34218629 -109567826 - HERV3 LTR ERV1 -4006 948 646 2450 182 83 122 chr12 34218714 34219556 -109566899 - HERV3 LTR ERV1 -7007 809 1 1441 143 67 53 chr12 34219556 34219842 -109566613 - MER51A LTR ERV1 0 634 353 2397 92 3 0 chr12 34219842 34220147 -109566308 - AluSp SINE Alu -7 306 1 1441 143 67 53 chr12 34220147 34220267 -109566188 - MER51A LTR ERV1 -281 353 1 780 182 8 0 chr12 34220314 34220446 -109566009 + FLAM_A SINE Alu 1 133 0 2132 114 0 0 chr12 34220947 34221248 -109565207 + AluSg SINE Alu 1 301 0 761 128 30 30 chr12 34221294 34221427 -109565028 + AluJb SINE Alu 2 134 -178 2392 98 0 0 chr12 34221557 34221854 -109564601 - AluSg SINE Alu -13 297 1 3820 77 18 18 chr12 34222132 34222801 -109563654 + MER11A LTR ERVK 1 737 -499 2306 69 5 161 chr12 34223441 34223876 -109562579 + MER11A LTR ERVK 900 1266 0 2043 118 31 0 chr12 34224402 34224690 -109561765 + AluSx SINE Alu 1 297 -15 1793 175 3 3 chr12 34224700 34224997 -109561458 + AluJb SINE Alu 6 302 -10 2170 136 57 119 chr12 34225069 34225665 -109560790 + LTR34 LTR ERV1 1 559 -140 1779 151 44 12 chr12 34225665 34225984 -109560471 - THE1C LTR MaLR 0 375 47 2079 134 0 0 chr12 34226202 34226485 -109559970 - AluSx SINE Alu -29 283 1 1368 132 7 162 chr12 34226625 34227033 -109559422 + L1M2 LINE L1 5141 5610 -633 1651 151 74 7 chr12 34227033 34227317 -109559138 + AluSx SINE Alu 1 303 -9 960 253 34 3 chr12 34227317 34227610 -109558845 + AluSx SINE Alu 1 302 0 1368 132 7 162 chr12 34227610 34227625 -109558830 + L1M2 LINE L1 5484 5500 -743 335 213 40 0 chr12 34228107 34228182 -109558273 + MSTD-int LTR MaLR 1658 1735 0 1123 192 113 73 chr12 34228182 34228563 -109557892 + MSTD LTR MaLR 1 396 0 556 305 0 38 chr12 34228674 34228887 -109557568 + MIR SINE MIR 45 249 -13 26 0 0 0 chr12 34228897 34228923 -109557532 + AT_rich Low_complexity Low_complexity 1 26 0 612 202 0 0 chr12 34229161 34229285 -109557170 + AluSg/x SINE Alu 168 291 -19 510 274 26 63 chr12 34229388 34229578 -109556877 + MER34 LTR ERV1 359 541 -1 498 241 0 0 chr12 34229882 34229990 -109556465 + FLAM_A SINE Alu 15 122 -20 843 246 12 12 chr12 34230146 34230398 -109556057 - AluY SINE Alu -11 300 49 676 200 0 0 chr12 34230532 34230657 -109555798 + AluSp/q SINE Alu 164 288 -25 1730 171 0 17 chr12 34230663 34230962 -109555493 + AluSx SINE Alu 1 294 -18 504 174 0 54 chr12 34230962 34231129 -109555326 + GA-rich Low_complexity Low_complexity 2 159 0 347 243 18 29 chr12 34231145 34231418 -109555037 + GA-rich Low_complexity Low_complexity 1 270 0 823 273 0 38 chr12 34231442 34231731 -109554724 + AluSx SINE Alu 14 291 -21 977 168 119 10 chr12 34231840 34232042 -109554413 + Tigger3(Golem) DNA MER2_type 2803 3026 -3 292 181 12 60 chr12 34232065 34232148 -109554307 - LTR37B LTR ERV1 -246 222 144 389 272 56 16 chr12 34232167 34232292 -109554163 + MER58A DNA MER1_type 14 143 0 2529 164 2 2 chr12 34232455 34232876 -109553579 + LTR3 LTR ERVK 12 432 0 1505 166 11 7 chr12 34232978 34233261 -109553194 + MER41A LTR ERV1 1 284 -270 1175 214 25 4 chr12 34233364 34233602 -109552853 + AluJb SINE Alu 50 292 -20 2354 101 67 20 chr12 34233848 34234206 -109552249 - THE1C LTR MaLR 0 375 1 1070 98 0 0 chr12 34234655 34234798 -109551657 - AluSg/x SINE Alu 0 312 170 26 0 0 0 chr12 34235036 34235062 -109551393 + AT_rich Low_complexity Low_complexity 1 26 0 584 295 0 31 chr12 34235072 34235295 -109551160 - MIR SINE MIR -13 249 35 1020 215 105 68 chr12 34235394 34235776 -109550679 - MSTD LTR MaLR 0 396 1 1270 243 71 6 chr12 34235782 34236148 -109550307 - MSTD-int LTR MaLR -5 1730 1341 1941 126 4 0 chr12 34236248 34236519 -109549936 - AluSx SINE Alu -40 272 1 1528 213 3 7 chr12 34236519 34236818 -109549637 - AluJb SINE Alu 0 312 14 828 120 0 8 chr12 34237432 34237549 -109548906 - AluSq/x SINE Alu -195 118 3 280 192 14 82 chr12 34237553 34237626 -109548829 + AluJb SINE Alu 68 135 -167 231 323 65 57 chr12 34237912 34238036 -109548419 + L2 LINE L2 3145 3269 -3 1862 143 3 7 chr12 34238085 34238378 -109548077 - AluSx SINE Alu -20 292 1 29 28 0 0 chr12 34239678 34239714 -109546741 + AT_rich Low_complexity Low_complexity 1 36 0 1673 136 11 11 chr12 34240523 34240803 -109545652 - AluSc SINE Alu -29 280 1 423 60 0 45 chr12 34241552 34241619 -109544836 - AluJ/FLAM SINE Alu -238 74 11 733 144 0 53 chr12 34241819 34241951 -109544504 - FLAM_C SINE Alu -6 127 3 195 268 0 36 chr12 34242760 34242816 -109543639 - L3 LINE CR1 -12 1565 1512 228 67 0 0 chr12 34243450 34243480 -109542975 + (TG)n Simple_repeat Simple_repeat 1 30 0 507 42 70 0 chr12 34244198 34244269 -109542186 - AluY SINE Alu -22 289 214 1222 241 24 21 chr12 34245109 34245313 -109541142 - MLT1A1 LTR MaLR -73 292 85 2293 146 37 0 chr12 34245313 34245663 -109540792 - THE1B LTR MaLR -1 363 1 1222 241 24 21 chr12 34245663 34245749 -109540706 - MLT1A1 LTR MaLR -280 85 1 260 143 63 32 chr12 34246099 34246162 -109540293 - MER91B DNA MER1_type -125 65 1 299 293 76 58 chr12 34247280 34247505 -109538950 - MIR SINE MIR -2 260 32 34 0 0 0 chr12 34248839 34248873 -109537582 + AT_rich Low_complexity Low_complexity 1 34 0 446 224 93 25 chr12 34250331 34250492 -109535963 - L2 LINE L2 -423 2891 2720 1980 110 3 10 chr12 34250713 34251012 -109535443 + AluSx SINE Alu 1 297 -15 1052 244 7 7 chr12 34251807 34252086 -109534369 - AluSx SINE Alu -14 298 20 1054 236 98 11 chr12 34252096 34252372 -109534083 - AluJo SINE Alu 0 302 3 694 268 37 30 chr12 34252763 34253032 -109533423 - L1PA16 LINE L1 -2 6164 5894 198 0 0 0 chr12 34253542 34253564 -109532891 + (TTATA)n Simple_repeat Simple_repeat 4 25 0 1429 123 0 0 chr12 34253564 34253767 -109532688 - AluY SINE Alu -30 281 79 21 89 0 0 chr12 34253771 34253827 -109532628 + AT_rich Low_complexity Low_complexity 1 56 0 2051 133 3 0 chr12 34253940 34254242 -109532213 - AluSp SINE Alu -8 305 3 1612 188 3 0 chr12 34254637 34254930 -109531525 - AluSx SINE Alu -12 300 7 1370 226 3 10 chr12 34254935 34255236 -109531219 - AluJb SINE Alu 0 312 14 374 278 136 0 chr12 34256327 34256489 -109529966 - MIR SINE MIR 0 262 79 234 0 0 0 chr12 34256905 34256931 -109529524 + (A)n Simple_repeat Simple_repeat 1 26 0 1894 149 45 0 chr12 34256941 34257229 -109529226 + AluSx SINE Alu 1 301 -11 1948 91 24 7 chr12 34257691 34257978 -109528477 - AluSq SINE Alu -19 294 3 2525 66 0 7 chr12 34257991 34258295 -109528160 - AluY SINE Alu -9 302 1 977 186 0 0 chr12 34258443 34258615 -109527840 - AluJ SINE Alu -9 303 132 2234 109 0 3 chr12 34258628 34258921 -109527534 + AluSg SINE Alu 1 292 -18 932 194 0 22 chr12 34258934 34259114 -109527341 + AluSg/x SINE Alu 119 294 -18 489 193 8 59 chr12 34259114 34259233 -109527222 - AluJ SINE Alu -190 122 10 1368 200 0 0 chr12 34259246 34259486 -109526969 + AluJo SINE Alu 52 291 -21 643 223 30 82 chr12 34259849 34259968 -109526487 + AluJb SINE Alu 11 135 -177 1510 177 14 0 chr12 34259968 34260245 -109526210 + AluY SINE Alu 1 281 -30 293 0 0 26 chr12 34260250 34260288 -109526167 + (TATAA)n Simple_repeat Simple_repeat 4 40 0 643 223 30 82 chr12 34260288 34260395 -109526060 + AluJb SINE Alu 139 231 -81 189 0 0 0 chr12 34260478 34260499 -109525956 + (CA)n Simple_repeat Simple_repeat 2 22 0 1680 171 0 0 chr12 34260531 34260811 -109525644 + AluSq SINE Alu 7 286 -27 314 23 23 0 chr12 34260811 34260854 -109525601 + (TA)n Simple_repeat Simple_repeat 2 45 0 1061 230 3 25 chr12 34260857 34261140 -109525315 + AluJb SINE Alu 5 281 -31 505 0 31 0 chr12 34261142 34261207 -109525248 + (TA)n Simple_repeat Simple_repeat 1 67 0 771 228 29 58 chr12 34261249 34261525 -109524930 + LTR29 LTR ERV1 137 404 -218 519 188 55 31 chr12 34261576 34261704 -109524751 + AluSq SINE Alu 23 153 -160 386 323 71 34 chr12 34261815 34262137 -109524318 - L2 LINE L2 -1145 2169 1836 1892 160 0 0 chr12 34262165 34262452 -109524003 + AluSx SINE Alu 2 288 -24 8380 54 1 0 chr12 34262747 34263712 -109522743 - LTR5 LTR ERVK -3 966 1 318 258 0 52 chr12 34263723 34263742 -109522713 - L1MC2 LINE L1 -320 6024 6006 821 203 6 28 chr12 34263742 34263924 -109522531 - L1MB8 LINE L1 -170 6008 5831 1265 109 0 22 chr12 34263935 34264118 -109522337 - AluSp SINE Alu -8 305 127 530 204 28 42 chr12 34264315 34264457 -109521998 - L1MB8 LINE L1 -687 5475 5336 400 204 11 0 chr12 34264461 34264549 -109521906 + AluSg/x SINE Alu 208 296 -14 198 136 0 0 chr12 34264656 34264700 -109521755 + (TA)n Simple_repeat Simple_repeat 1 44 0 2489 80 0 0 chr12 34265318 34265619 -109520836 - AluY SINE Alu -10 301 1 22 0 0 0 chr12 34265843 34265865 -109520590 + AT_rich Low_complexity Low_complexity 1 22 0 1501 151 98 4 chr12 34265922 34266187 -109520268 - MLT1B LTR MaLR -77 313 24 937 171 77 6 chr12 34266527 34266697 -109519758 + THE1B LTR MaLR 182 363 -1 909 224 6 6 chr12 34266721 34266900 -109519555 + MLT1A1 LTR MaLR 115 293 -72 2019 150 0 0 chr12 34267556 34267850 -109518605 - AluSx SINE Alu -17 295 2 1707 194 0 10 chr12 34268433 34268732 -109517723 - AluJb SINE Alu -16 296 1 597 314 36 4 chr12 34269373 34269621 -109516834 + AluJo SINE Alu 14 269 -43 226 294 92 37 chr12 34269817 34269980 -109516475 + MIR SINE MIR 86 257 -5 314 247 14 0 chr12 34269980 34270053 -109516402 + L1ME4a LINE L1 5954 6027 -94 2283 109 0 7 chr12 34270484 34270786 -109515669 - AluSx SINE Alu -12 300 1 617 271 45 29 chr12 34270864 34271038 -109515417 + MIR SINE MIR 14 195 -67 270 0 0 0 chr12 34271038 34271068 -109515387 + (TG)n Simple_repeat Simple_repeat 2 31 0 617 271 45 29 chr12 34271068 34271137 -109515318 + MIR SINE MIR 195 261 -1 2135 97 31 3 chr12 34271718 34272008 -109514447 + AluSq SINE Alu 1 298 -15 974 90 0 8 chr12 34272471 34272605 -109513850 - FLAM_C SINE Alu 0 133 1 883 105 0 45 chr12 34272789 34272922 -109513533 - FLAM_C SINE Alu -6 127 1 581 184 159 12 chr12 34273782 34273945 -109512510 + MER20 DNA MER1_type 33 219 0 217 283 17 0 chr12 34274840 34274900 -109511555 - MIR SINE MIR -157 105 45 2351 97 0 0 chr12 34274982 34275281 -109511174 - AluY SINE Alu -12 299 1 652 105 0 67 chr12 34275353 34275458 -109510997 + MER4A LTR ERV1 1 98 -566 1419 135 200 108 chr12 34275458 34275748 -109510707 + MER4A LTR ERV1 261 594 -70 1854 132 4 21 chr12 34275748 34276029 -109510426 + AluSx SINE Alu 20 295 -17 1419 135 200 108 chr12 34276029 34276108 -109510347 + MER4A LTR ERV1 594 664 0 2088 101 42 0 chr12 34276240 34276526 -109509929 + AluSq SINE Alu 1 298 -15 523 249 120 17 chr12 34276617 34276858 -109509597 - MER34B LTR ERV1 -122 443 178 742 124 34 22 chr12 34276927 34277105 -109509350 + CT-rich Low_complexity Low_complexity 1 180 0 386 158 37 37 chr12 34277108 34277190 -109509265 - MER34B LTR ERV1 -483 82 1 745 182 0 30 chr12 34277441 34277573 -109508882 + FLAM_C SINE Alu 2 129 -14 2263 119 0 0 chr12 34277580 34277883 -109508572 + AluSx SINE Alu 1 303 -9 336 24 0 0 chr12 34277883 34277924 -109508531 + (CA)n Simple_repeat Simple_repeat 2 42 0 2179 163 22 38 chr12 34278014 34278467 -109507988 + L1MB8 LINE L1 5733 6178 0 2482 77 0 0 chr12 34278478 34278776 -109507679 + AluY SINE Alu 1 298 -13 1273 188 96 15 chr12 34278784 34279056 -109507399 + AluJo SINE Alu 1 294 -18 609 194 47 23 chr12 34279107 34279236 -109507219 - MER110 LTR ERV1 0 491 360 2228 108 0 3 chr12 34279284 34279581 -109506874 + AluY SINE Alu 1 296 -15 1341 247 60 26 chr12 34279608 34279779 -109506676 - LTR29 LTR ERV1 -4 607 443 2009 142 0 7 chr12 34279779 34280074 -109506381 - AluSx SINE Alu -19 293 1 1341 247 60 26 chr12 34280074 34280378 -109506077 - LTR29 LTR ERV1 -168 443 137 537 30 0 0 chr12 34280418 34280485 -109505970 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 1597 177 3 18 chr12 34280487 34280770 -109505685 - AluJb SINE Alu -31 281 3 305 23 0 23 chr12 34280771 34280814 -109505641 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2269 94 0 0 chr12 34280814 34281100 -109505355 - AluSq SINE Alu -27 286 1 1700 128 9 122 chr12 34281121 34281335 -109505120 - AluSx SINE Alu -3 309 72 311 0 0 25 chr12 34281335 34281375 -109505080 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2215 79 14 0 chr12 34281377 34281655 -109504800 - AluY SINE Alu -29 282 1 1700 128 9 122 chr12 34281655 34281774 -109504681 - AluSx SINE Alu -241 71 11 268 214 29 0 chr12 34281785 34281855 -109504600 - MER34 LTR ERV1 -470 72 1 1943 133 10 17 chr12 34281970 34282271 -109504184 + AluSx SINE Alu 1 299 -13 1083 153 6 6 chr12 34282275 34282445 -109504010 - MER2 DNA MER2_type -173 172 3 250 346 47 16 chr12 34282484 34282611 -109503844 - L2 LINE L2 -3 3310 3180 2388 67 3 13 chr12 34282731 34283030 -109503425 - AluSg SINE Alu -14 296 1 2573 162 40 120 chr12 34283291 34283615 -109502840 - MER67C LTR ERV1 0 710 362 4050 148 3 3 chr12 34283615 34283730 -109502725 - MER41B LTR ERV1 -1 634 520 2014 145 3 7 chr12 34283730 34284040 -109502415 + AluSg SINE Alu 1 309 -1 4050 148 3 3 chr12 34284040 34284558 -109501897 - MER41B LTR ERV1 -114 521 1 2573 162 40 120 chr12 34284558 34284626 -109501829 - MER67C LTR ERV1 -348 362 290 1838 173 10 19 chr12 34284626 34284939 -109501516 - AluJo SINE Alu -2 310 1 2573 162 40 120 chr12 34284939 34285029 -109501426 - MER67C LTR ERV1 -420 290 194 4153 99 23 44 chr12 34285029 34285100 -109501355 + LTR9B LTR ERV1 1 72 -572 2394 51 0 74 chr12 34285100 34285436 -109501019 - AluY SINE Alu 0 311 1 4153 99 23 44 chr12 34285436 34286022 -109500433 + LTR9B LTR ERV1 72 644 0 2573 162 40 120 chr12 34286022 34286147 -109500308 - MER67C LTR ERV1 -516 194 163 2068 111 4 4 chr12 34286147 34286454 -109500001 + AluSg SINE Alu 1 307 0 2573 162 40 120 chr12 34286454 34286558 -109499897 - MER67C LTR ERV1 -547 163 52 2976 89 13 17 chr12 34286600 34287071 -109499384 - MER4A LTR ERV1 0 664 128 2145 122 0 0 chr12 34287071 34287357 -109499098 - AluSc SINE Alu -22 287 2 402 100 0 0 chr12 34287367 34287427 -109499028 - Alu SINE Alu -10 300 241 1720 146 7 22 chr12 34287432 34287707 -109498748 + AluJb SINE Alu 28 298 -14 2501 97 46 0 chr12 34288218 34288568 -109497887 - MER51C LTR ERV1 0 640 275 659 109 11 0 chr12 34288568 34288660 -109497795 + AluSx SINE Alu 28 120 -192 857 125 26 33 chr12 34288661 34288813 -109497642 + LTR10E LTR ERV1 481 631 -2 730 205 86 27 chr12 34288817 34289029 -109497426 + HERVI LTR ERV1 5 225 -6424 1566 189 93 0 chr12 34289069 34289392 -109497063 + Harlequin LTR ERV1 2740 3092 -3804 4536 270 11 25 chr12 34289394 34289647 -109496808 + Harlequin LTR ERV1 6413 6668 -1117 2333 70 3 58 chr12 34289647 34289976 -109496479 - AluY SINE Alu 0 311 1 4536 270 11 25 chr12 34289976 34290975 -109495480 + Harlequin LTR ERV1 6668 7647 -138 761 21 11 0 chr12 34291039 34291133 -109495322 + LTR10E LTR ERV1 1 95 -538 2862 123 7 23 chr12 34291134 34291564 -109494891 + LTR10E LTR ERV1 210 632 -1 1472 102 0 15 chr12 34291577 34291782 -109494673 + AluSx SINE Alu 105 306 -6 915 190 0 0 chr12 34291794 34291952 -109494503 + AluSq SINE Alu 131 288 -25 1918 134 0 11 chr12 34291958 34292234 -109494221 + AluSx SINE Alu 1 273 -39 690 190 0 28 chr12 34292246 34292425 -109494030 + GA-rich Low_complexity Low_complexity 3 176 0 807 99 22 39 chr12 34292441 34292623 -109493832 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 378 110 30 40 chr12 34292623 34292723 -109493732 + GA-rich Low_complexity Low_complexity 4 102 0 1898 130 3 33 chr12 34292738 34293038 -109493417 + AluSq SINE Alu 16 306 -7 1861 170 0 0 chr12 34293094 34293388 -109493067 + AluJb SINE Alu 1 294 -18 2072 120 0 17 chr12 34293390 34293691 -109492764 + AluSq SINE Alu 1 296 -17 1088 193 8 42 chr12 34294186 34294445 -109492010 - LTR16C LTR ERVL -9 482 233 1786 175 16 6 chr12 34294719 34295034 -109491421 - MER89 LTR ERV1 0 559 242 1691 164 3 17 chr12 34295035 34295322 -109491133 - AluJb SINE Alu -28 284 2 1125 137 6 6 chr12 34295335 34295510 -109490945 + MER89 LTR ERV1 385 559 0 267 291 28 111 chr12 34295516 34295805 -109490650 + L2 LINE L2 2826 3090 -182 221 163 0 41 chr12 34295921 34295970 -109490485 + L2 LINE L2 3226 3272 0 2041 73 0 4 chr12 34296095 34296354 -109490101 + AluY SINE Alu 47 304 -7 736 190 0 0 chr12 34296506 34296627 -109489828 - FLAM_A SINE Alu -11 122 2 1209 267 28 84 chr12 34296918 34297491 -109488964 - MER34 LTR ERV1 -1 541 1 207 188 31 16 chr12 34297517 34297581 -109488874 + (TA)n Simple_repeat Simple_repeat 2 66 0 2267 95 0 7 chr12 34297619 34297923 -109488532 - AluSx SINE Alu -10 302 1 2106 147 0 0 chr12 34298015 34298322 -109488133 - AluJo SINE Alu 0 312 6 2069 112 31 0 chr12 34298332 34298619 -109487836 - AluSx SINE Alu -16 296 1 2306 69 5 161 chr12 34299145 34299580 -109486875 - MER11A LTR ERVK 0 1266 900 3820 77 18 18 chr12 34300221 34300890 -109485565 - MER11A LTR ERVK -499 737 1 1581 159 26 15 chr12 34301168 34301438 -109485017 + AluSg SINE Alu 1 273 -37 2076 140 80 0 chr12 34301469 34302106 -109484349 - MER4B-int LTR ERV1 -1231 5527 1911 289 104 21 21 chr12 34302215 34302263 -109484192 + AluSg SINE Alu 248 295 -6 1608 149 104 7 chr12 34302672 34302941 -109483514 + AluJb SINE Alu 3 297 -15 186 133 0 0 chr12 34303794 34303824 -109482631 + (T)n Simple_repeat Simple_repeat 1 30 0 1153 95 0 6 chr12 34303824 34303982 -109482473 - LTR17 LTR ERV1 -454 326 170 748 103 0 0 chr12 34304031 34304138 -109482317 - AluY SINE Alu -7 304 198 2394 80 10 0 chr12 34304326 34304628 -109481827 - AluY SINE Alu -5 306 2 2431 88 0 0 chr12 34304633 34304929 -109481526 - AluSx SINE Alu -16 296 1 2161 124 3 0 chr12 34305120 34305418 -109481037 - AluSx SINE Alu -13 299 1 2120 125 7 0 chr12 34305418 34305714 -109480741 - AluSq SINE Alu -15 298 1 234 0 0 0 chr12 34305724 34305750 -109480705 + (T)n Simple_repeat Simple_repeat 1 26 0 283 291 119 0 chr12 34306167 34306301 -109480154 + MIR SINE MIR 79 228 -34 1263 142 17 43 chr12 34307051 34307283 -109479172 + AluSg/x SINE Alu 83 308 -2 2310 103 0 7 chr12 34307587 34307897 -109478558 - AluSx SINE Alu -4 308 1 1689 138 24 71 chr12 34308548 34308737 -109477718 - AluJb SINE Alu 0 307 137 2504 63 0 3 chr12 34308737 34309039 -109477416 - AluY SINE Alu -10 301 1 1689 138 24 71 chr12 34309039 34309170 -109477285 - AluJb SINE Alu -170 137 1 2109 141 0 13 chr12 34309292 34309597 -109476858 - AluSx SINE Alu -11 301 1 2464 73 0 19 chr12 34309903 34310220 -109476235 - AluY SINE Alu 0 311 1 2347 75 34 0 chr12 34310222 34310514 -109475941 - AluSp SINE Alu -11 302 1 1701 191 7 3 chr12 34310515 34310819 -109475636 - AluJo SINE Alu -7 305 1 1018 168 51 141 chr12 34311536 34311939 -109474516 + MER67C LTR ERV1 2 372 -338 391 274 44 15 chr12 34311949 34312084 -109474371 - MLT1A2 LTR MaLR -50 324 186 2786 147 8 24 chr12 34312125 34312509 -109473946 + L1MA7 LINE L1 5787 6163 -128 1863 175 0 13 chr12 34312509 34312817 -109473638 + AluJo SINE Alu 1 304 -8 2786 147 8 24 chr12 34312817 34312923 -109473532 + L1MA7 LINE L1 6163 6269 -22 2145 89 3 0 chr12 34313013 34313322 -109473133 + AluY SINE Alu 1 310 0 755 190 0 0 chr12 34313482 34313624 -109472831 - FLAM_C SINE Alu 0 143 2 1836 170 3 3 chr12 34313636 34313948 -109472507 - AluJb SINE Alu 0 312 1 1887 148 3 17 chr12 34313957 34314116 -109472339 - AluJb SINE Alu -9 293 138 2263 110 0 23 chr12 34314116 34314287 -109472168 - AluSx SINE Alu -11 301 139 1994 110 68 0 chr12 34314287 34314568 -109471887 - AluSx SINE Alu -12 300 1 2263 110 0 23 chr12 34314568 34314704 -109471751 - AluSx SINE Alu -173 139 1 1887 148 3 17 chr12 34314704 34314841 -109471614 - AluJb SINE Alu -164 138 1 1476 211 65 16 chr12 34314888 34315210 -109471245 - MLT1C LTR MaLR 0 467 130 1230 194 61 5 chr12 34315210 34315491 -109470964 + MSTB LTR MaLR 1 328 -100 1874 176 48 53 chr12 34315491 34315953 -109470502 - LTR10B LTR ERV1 0 547 1 686 111 10 0 chr12 34315953 34316052 -109470403 + MSTB LTR MaLR 329 428 -4 610 128 32 72 chr12 34316058 34316183 -109470272 - MLT1C LTR MaLR -334 133 14 1660 158 7 61 chr12 34316394 34316517 -109469938 + AluJb SINE Alu 18 146 -166 2203 110 0 0 chr12 34316517 34316837 -109469618 + AluSx SINE Alu 1 320 0 1660 158 7 61 chr12 34316837 34317009 -109469446 + AluJb SINE Alu 146 298 -14 800 198 95 102 chr12 34317140 34317551 -109468904 - MER92C LTR ERV1 -2 552 57 2282 99 0 13 chr12 34317668 34318003 -109468452 - AluY SINE Alu 0 311 1 2164 97 23 16 chr12 34318033 34318343 -109468112 - AluSp SINE Alu -1 312 1 2215 128 0 0 chr12 34318355 34318652 -109467803 - AluSx SINE Alu -15 297 1 1951 123 33 0 chr12 34318659 34318814 -109467641 - AluSg SINE Alu -22 288 119 234 0 0 0 chr12 34318814 34318840 -109467615 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 1951 123 33 0 chr12 34318840 34318960 -109467495 - AluSg SINE Alu -191 119 4 259 170 0 21 chr12 34318968 34319015 -109467440 - MER92B LTR ERV1 -588 48 3 1209 273 120 27 chr12 34319219 34319812 -109466643 + Charlie7 DNA MER1_type 8 655 -1957 283 241 0 25 chr12 34319827 34319906 -109466549 + Charlie7 DNA MER1_type 2193 2269 -343 1903 108 0 0 chr12 34319906 34320156 -109466299 + AluSx SINE Alu 1 250 -62 464 136 0 0 chr12 34320157 34320267 -109466188 + AluSg/x SINE Alu 213 322 0 2254 95 0 7 chr12 34320293 34320589 -109465866 + MER1B DNA MER1_type 46 339 0 673 157 19 50 chr12 34320725 34320884 -109465571 - LTR37B LTR ERV1 0 468 315 2817 177 21 23 chr12 34320896 34321411 -109465044 + MLT2B3 LTR ERVL 1 514 -40 278 95 0 24 chr12 34321442 34321484 -109464971 + MLT2B3 LTR ERVL 506 546 -8 4396 127 55 24 chr12 34321532 34322158 -109464297 + Tigger3b DNA MER2_type 1 655 -2373 2355 100 3 0 chr12 34322158 34322457 -109463998 - AluSg SINE Alu -10 300 1 4396 127 55 24 chr12 34322457 34322571 -109463884 + Tigger3b DNA MER2_type 655 764 -467 1314 138 14 14 chr12 34322578 34322788 -109463667 + AluJo SINE Alu 85 294 -18 1436 124 5 5 chr12 34322809 34323018 -109463437 + AluJb SINE Alu 89 297 -15 939 115 47 0 chr12 34323038 34323181 -109463274 + Tigger3b DNA MER2_type 778 927 -304 1570 161 193 45 chr12 34323181 34323585 -109462870 + LTR44 LTR ERV1 1 464 -55 496 81 0 68 chr12 34323575 34323623 -109462832 + Tigger3b DNA MER2_type 1097 1140 -1888 * 1025 268 52 69 chr12 34323623 34324302 -109462153 + PABL_B LTR ERV1 1 667 0 496 81 0 68 chr12 34324302 34324327 -109462128 + Tigger3b DNA MER2_type 1140 1165 -66 180 0 0 0 chr12 34324352 34324372 -109462083 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1773 148 11 14 chr12 34324374 34324523 -109461932 - AluSx SINE Alu -30 282 133 2076 108 7 3 chr12 34324523 34324818 -109461637 - AluSg SINE Alu -14 296 1 1773 148 11 14 chr12 34324818 34324951 -109461504 - AluSx SINE Alu -179 133 1 383 74 19 0 chr12 34324951 34325005 -109461450 + LTR44 LTR ERV1 465 519 0 1639 122 129 0 chr12 34325005 34325276 -109461179 + Tigger3b DNA MER2_type 925 1230 -2 320 174 12 58 chr12 34325296 34325382 -109461073 - LTR37B LTR ERV1 -243 225 144 543 292 39 7 chr12 34325401 34325555 -109460900 + MER58A DNA MER1_type 14 172 -52 3266 96 12 2 chr12 34325682 34326110 -109460345 + LTR3 LTR ERVK 1 432 0 4310 92 0 0 chr12 34326212 34326766 -109459689 + MER41A LTR ERV1 1 554 0 279 164 0 18 chr12 34326766 34326821 -109459634 - LTR37B LTR ERV1 -408 60 7 180 225 0 0 chr12 34326905 34326945 -109459510 - L2 LINE L2 -5 3308 3269 2503 80 0 0 chr12 34327040 34327340 -109459115 - AluY SINE Alu -11 300 1 1680 213 48 23 chr12 34327458 34327537 -109458918 + L1M4 LINE L1 4713 4789 -1357 1264 191 28 101 chr12 34327537 34327924 -109458531 + MLT1A1 LTR MaLR 5 363 -2 1680 213 48 23 chr12 34327924 34328277 -109458178 + L1M4 LINE L1 4789 5156 -990 502 209 0 0 chr12 34328378 34328483 -109457972 + AluSg/x SINE Alu 208 312 0 260 285 69 28 chr12 34328713 34328857 -109457598 + MIR SINE MIR 73 222 -40 228 67 0 0 chr12 34329221 34329251 -109457204 + (TG)n Simple_repeat Simple_repeat 1 30 0 481 56 70 0 chr12 34329972 34330043 -109456412 - AluY SINE Alu -22 289 214 296 233 120 38 chr12 34330044 34330177 -109456278 - L1ME4a LINE L1 -177 5944 5801 1421 194 54 4 chr12 34330258 34330536 -109455919 + AluJb SINE Alu 1 292 -20 2525 81 67 20 chr12 34330784 34331142 -109455313 - THE1C LTR MaLR 0 375 1 463 265 30 8 chr12 34331612 34331744 -109454711 + MIR SINE MIR 110 244 -18 2215 60 32 3 chr12 34331976 34332260 -109454195 + AluY SINE Alu 1 292 -19 2009 153 3 0 chr12 34333075 34333399 -109453056 - AluJb SINE Alu 0 325 1 21 0 0 0 chr12 34333404 34333425 -109453030 + AT_rich Low_complexity Low_complexity 1 21 0 1889 165 3 3 chr12 34333708 34333999 -109452456 + AluJb SINE Alu 1 291 -21 396 0 0 0 chr12 34334026 34334070 -109452385 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 365 267 12 0 chr12 34334126 34334212 -109452243 - MIR SINE MIR -105 157 71 413 262 129 6 chr12 34334343 34334498 -109451957 + MIR SINE MIR 20 192 -63 231 330 0 10 chr12 34334646 34334746 -109451709 - MIR SINE MIR -1 261 163 2121 126 3 0 chr12 34336137 34336431 -109450024 - AluSq SINE Alu -18 295 1 2160 121 3 0 chr12 34336725 34337023 -109449432 + AluSx SINE Alu 1 299 -13 380 295 39 34 chr12 34337303 34337537 -109448918 + L1M4 LINE L1 4698 4932 -1214 1065 121 0 0 chr12 34337678 34337827 -109448628 + AluSg/x SINE Alu 161 309 -1 4971 112 17 50 chr12 34337912 34338395 -109448060 + MER4E LTR ERV1 1 449 -330 2148 126 3 3 chr12 34338395 34338705 -109447750 - AluSg SINE Alu 0 310 1 4971 112 17 50 chr12 34338705 34339026 -109447429 + MER4E LTR ERV1 449 779 0 2405 97 0 0 chr12 34339075 34339374 -109447081 - AluSx SINE Alu -13 299 1 30 0 0 0 chr12 34339511 34339541 -109446914 + AT_rich Low_complexity Low_complexity 1 30 0 983 179 131 84 chr12 34339556 34339702 -109446753 - MER2 DNA MER2_type -34 311 173 1356 101 101 0 chr12 34339702 34339911 -109446544 + MER30 DNA MER1_type 1 230 0 2315 48 39 32 chr12 34339913 34340222 -109446233 - AluY SINE Alu 0 311 1 983 179 131 84 chr12 34340222 34340369 -109446086 - MER2 DNA MER2_type -172 173 1 1504 257 62 45 chr12 34340385 34340445 -109446010 - MER20B DNA MER1_type -213 570 513 5495 74 22 24 chr12 34340445 34341179 -109445276 + MER4E LTR ERV1 1 735 -31 2493 58 3 0 chr12 34341179 34341471 -109444984 + AluY SINE Alu 1 293 -18 5495 74 22 24 chr12 34341471 34341503 -109444952 + MER4E LTR ERV1 735 766 0 1504 257 62 45 chr12 34341503 34341740 -109444715 - MER20B DNA MER1_type -270 513 282 2602 65 0 0 chr12 34341740 34342047 -109444408 + AluSg1 SINE Alu 1 307 -2 1504 257 62 45 chr12 34342047 34342308 -109444147 - MER20B DNA MER1_type -501 282 1 523 0 30 0 chr12 34342594 34342661 -109443794 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 243 172 17 35 chr12 34342664 34342722 -109443733 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 226 164 36 36 chr12 34342741 34342796 -109443659 + L1MC/D LINE L1 5706 5760 -2048 1805 154 58 0 chr12 34342801 34343093 -109443362 - AluSx SINE Alu -1 311 3 294 95 0 0 chr12 34343105 34343147 -109443308 + (TA)n Simple_repeat Simple_repeat 1 42 0 1196 182 88 25 chr12 34343147 34343161 -109443294 - Charlie1b DNA MER1_type -2415 346 334 2248 106 0 0 chr12 34343161 34343454 -109443001 - AluSq SINE Alu -20 293 1 1196 182 88 25 chr12 34343454 34343758 -109442697 - Charlie1b DNA MER1_type -2427 334 8 229 180 60 0 chr12 34343760 34343810 -109442645 + LTR37B LTR ERV1 138 190 -278 2138 117 0 0 chr12 34343837 34344120 -109442335 - AluSx SINE Alu -29 283 1 1658 169 10 29 chr12 34344190 34344552 -109441903 - AluJb SINE Alu 0 358 3 578 228 13 80 chr12 34344577 34344801 -109441654 + LTR37B LTR ERV1 257 465 -3 254 286 42 17 chr12 34344810 34344929 -109441526 - L1MC4 LINE L1 0 8042 7921 395 291 89 19 chr12 34344961 34345119 -109441336 + MER67C LTR ERV1 1 169 -541 251 278 8 30 chr12 34345120 34345253 -109441202 - L1MC4 LINE L1 -224 7818 7689 1663 159 52 4 chr12 34345303 34345427 -109441028 + AluJo SINE Alu 1 118 -194 279 0 0 0 chr12 34345427 34345458 -109440997 + (CA)n Simple_repeat Simple_repeat 2 32 0 1663 159 52 4 chr12 34345458 34345604 -109440851 + AluJo SINE Alu 118 284 -28 358 190 51 13 chr12 34345796 34345875 -109440580 - MLT1L LTR MaLR -8 607 526 881 126 47 0 chr12 34345877 34346004 -109440451 + AluJb SINE Alu 1 133 -179 371 71 0 18 chr12 34346030 34346086 -109440369 + (GGAGAA)n Simple_repeat Simple_repeat 3 57 0 1847 159 0 3 chr12 34346091 34346381 -109440074 + AluJb SINE Alu 12 300 -12 373 269 0 28 chr12 34346546 34346654 -109439801 + LTR67 LTR ERVL 431 535 -22 207 0 0 0 chr12 34347123 34347146 -109439309 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 629 157 19 0 chr12 34347414 34347522 -109438933 + FLAM_A SINE Alu 24 133 -9 2078 128 0 10 chr12 34347523 34347819 -109438636 + AluSx SINE Alu 1 293 -19 306 271 42 80 chr12 34348226 34348488 -109437967 - LTR16B LTR ERVL -6 458 207 2342 75 3 3 chr12 34348529 34348821 -109437634 - AluSq SINE Alu -19 294 3 2502 69 0 7 chr12 34348834 34349138 -109437317 - AluY SINE Alu -9 302 1 1396 174 4 32 chr12 34349149 34349402 -109437053 - AluJo SINE Alu -21 291 46 1915 124 0 11 chr12 34349419 34349693 -109436762 - AluY SINE Alu -38 273 3 2432 94 3 0 chr12 34349702 34350011 -109436444 - AluSp SINE Alu -3 310 1 1795 112 0 0 chr12 34350170 34350402 -109436053 + AluSg SINE Alu 61 292 -18 1077 173 0 17 chr12 34350415 34350594 -109435861 + AluSg/x SINE Alu 117 292 -18 606 151 8 59 chr12 34350594 34350713 -109435742 - AluJo/FLAM SINE Alu -190 122 10 1637 154 0 0 chr12 34350726 34350966 -109435489 + AluJo SINE Alu 52 291 -21 298 177 127 28 chr12 34351273 34351363 -109435092 + LTR24B LTR ERV1 1 95 -370 623 268 57 25 chr12 34351404 34351721 -109434734 + LTR24B LTR ERV1 207 533 -43 827 120 92 7 chr12 34351722 34351864 -109434591 - L1PB4 LINE L1 -5 6151 5998 419 29 58 0 chr12 34351864 34351933 -109434522 + (TTTTG)n Simple_repeat Simple_repeat 1 73 0 264 169 197 56 chr12 34351933 34351993 -109434462 - FLAM_A SINE Alu -186 116 41 717 154 0 0 chr12 34351994 34352104 -109434351 - AluSq/x SINE Alu -201 111 2 1341 140 0 0 chr12 34352108 34352308 -109434147 - L1PB4 LINE L1 -158 5998 5799 336 113 38 0 chr12 34352308 34352361 -109434094 + LTR24B LTR ERV1 517 571 -5 421 241 64 80 chr12 34352429 34352678 -109433777 - L1MC5 LINE L1 -457 7504 7260 590 250 91 27 chr12 34352782 34353002 -109433453 - L1MC5 LINE L1 -728 7233 7000 801 174 0 14 chr12 34353071 34353215 -109433240 - FRAM SINE Alu 0 40 1 464 243 33 55 chr12 34353219 34353400 -109433055 - L1MC4 LINE L1 -1000 7042 6866 791 136 21 21 chr12 34353493 34353633 -109432822 - L1ME LINE L1 -689 5475 5336 599 120 11 0 chr12 34353633 34353725 -109432730 + AluSg/x SINE Alu 206 298 -14 247 123 0 70 chr12 34353725 34353782 -109432673 - L1ME LINE L1 -998 5346 5294 207 0 0 0 chr12 34353853 34353876 -109432579 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 257 224 104 0 chr12 34353878 34353945 -109432510 - HsTC2 DNA Tc2 -1820 78 5 2489 80 0 0 chr12 34354491 34354792 -109431663 - AluY SINE Alu -10 301 1 22 0 0 0 chr12 34355016 34355038 -109431417 + AT_rich Low_complexity Low_complexity 1 22 0 1501 151 98 4 chr12 34355095 34355360 -109431095 - MLT1B LTR MaLR -77 313 24 1147 190 109 78 chr12 34355567 34355581 -109430874 - L1ME LINE L1 -843 5303 5291 2154 131 0 6 chr12 34355581 34355895 -109430560 - AluSx SINE Alu 0 312 1 1147 190 109 78 chr12 34355895 34356224 -109430231 - L1ME LINE L1 -855 5291 4944 1828 175 3 13 chr12 34356224 34356539 -109429916 + AluJb SINE Alu 1 312 0 1147 190 109 78 chr12 34356539 34356589 -109429866 - L1ME LINE L1 -1202 4944 4897 21 36 0 0 chr12 34356878 34356906 -109429549 + AT_rich Low_complexity Low_complexity 1 28 0 2101 106 6 42 chr12 34356947 34357259 -109429196 + AluSq SINE Alu 1 301 -12 407 250 106 0 chr12 34357779 34357883 -109428572 + L2 LINE L2 3199 3313 0 30 0 0 0 chr12 34358683 34358713 -109427742 + AT_rich Low_complexity Low_complexity 1 30 0 2004 154 0 0 chr12 34358713 34359005 -109427450 - AluJb SINE Alu -20 292 1 562 271 147 55 chr12 34359038 34359440 -109427015 + MLT1L LTR MaLR 164 602 -13 1070 98 0 0 chr12 34359444 34359587 -109426868 - AluSg/x SINE Alu 0 312 170 26 0 0 0 chr12 34359825 34359851 -109426604 + AT_rich Low_complexity Low_complexity 1 26 0 579 294 0 36 chr12 34359861 34360085 -109426370 - MIR SINE MIR -13 249 35 290 154 46 15 chr12 34360117 34360182 -109426273 - LTR67 LTR ERVL 0 557 491 1393 160 113 73 chr12 34360184 34360565 -109425890 - MSTD LTR MaLR 0 396 1 2956 222 63 10 chr12 34360565 34361187 -109425268 - MSTD-int LTR MaLR 0 1735 1081 2455 75 0 0 chr12 34361531 34361825 -109424630 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr12 34361872 34361896 -109424559 + AT_rich Low_complexity Low_complexity 1 24 0 1666 184 10 16 chr12 34361949 34362254 -109424201 - AluJo SINE Alu -9 303 1 214 148 0 56 chr12 34363361 34363415 -109423040 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1930 154 0 19 chr12 34363544 34363856 -109422599 - AluJb SINE Alu -6 306 1 2271 105 7 3 chr12 34363932 34364226 -109422229 - AluSx SINE Alu -17 295 1 204 227 236 45 chr12 34364267 34364377 -109422078 + MIR SINE MIR 20 150 -112 1002 153 0 29 chr12 34364416 34364586 -109421869 + FRAM SINE Alu 1 165 -11 821 143 0 57 chr12 34364729 34364869 -109421586 - FLAM_C SINE Alu 0 133 2 1907 87 80 0 chr12 34365018 34365282 -109421173 - AluSg SINE Alu -25 285 1 3090 154 11 11 chr12 34366039 34366565 -109419890 - L1PA16 LINE L1 0 6166 5641 1456 173 4 0 chr12 34366644 34366881 -109419574 + AluJb SINE Alu 42 279 -33 330 181 43 9 chr12 34366881 34366997 -109419458 + (TA)n Simple_repeat Simple_repeat 2 121 0 216 170 38 19 chr12 34370054 34370107 -109416348 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 200 224 0 59 chr12 34370114 34370199 -109416256 + MIR SINE MIR 183 262 0 330 266 11 11 chr12 34370581 34370675 -109415780 - Zaphod DNA AcHobo 0 4031 3938 529 229 65 18 chr12 34370975 34371145 -109415310 + MIR SINE MIR 15 192 -70 450 184 0 0 chr12 34371145 34371221 -109415234 + AluJ/FLAM SINE Alu 2 77 -235 2517 77 0 6 chr12 34371221 34371533 -109414922 - AluSq SINE Alu -3 310 1 1170 187 113 79 chr12 34371533 34371862 -109414593 - L1M4 LINE L1 -858 5288 4943 1860 171 3 13 chr12 34371862 34372177 -109414278 + AluJb SINE Alu 1 312 0 1170 187 113 79 chr12 34372177 34372226 -109414229 - L1M4 LINE L1 -1203 4943 4897 2074 109 6 42 chr12 34372582 34372894 -109413561 + AluSq SINE Alu 1 301 -12 407 250 106 0 chr12 34373414 34373518 -109412937 + L2 LINE L2 3199 3313 0 30 0 0 0 chr12 34374317 34374347 -109412108 + AT_rich Low_complexity Low_complexity 1 30 0 2004 154 0 0 chr12 34374347 34374639 -109411816 - AluJb SINE Alu -20 292 1 562 271 147 55 chr12 34374672 34375074 -109411381 + MLT1L LTR MaLR 164 602 -13 1045 86 7 0 chr12 34375077 34375217 -109411238 - AluSc SINE Alu -1 308 168 26 0 0 0 chr12 34375455 34375481 -109410974 + AT_rich Low_complexity Low_complexity 1 26 0 579 294 0 36 chr12 34375491 34375715 -109410740 - MIR SINE MIR -13 249 35 290 154 46 15 chr12 34375747 34375812 -109410643 - LTR67 LTR ERVL 0 557 491 1393 160 113 73 chr12 34375814 34376195 -109410260 - MSTD LTR MaLR 0 396 1 2795 223 64 13 chr12 34376195 34376818 -109409637 - MSTD-int LTR MaLR 0 1735 1081 2463 71 0 0 chr12 34377162 34377456 -109408999 + AluSg SINE Alu 1 294 -16 2292 92 13 0 chr12 34377461 34377764 -109408691 + AluY SINE Alu 2 308 -3 1662 158 14 4 chr12 34378757 34379057 -109407398 + AluJo SINE Alu 1 303 0 2218 116 3 0 chr12 34379110 34379404 -109407051 + AluSg SINE Alu 1 295 -15 2178 121 3 0 chr12 34379404 34379702 -109406753 + AluSx SINE Alu 1 299 -13 2431 88 0 0 chr12 34379892 34380188 -109406267 + AluSx SINE Alu 1 296 -16 2273 60 0 122 chr12 34380193 34380546 -109405909 + AluY SINE Alu 2 311 0 469 296 17 43 chr12 34381004 34381237 -109405218 - L2 LINE L2 -55 3258 3032 * 676 191 87 16 chr12 34381233 34381416 -109405039 - L2 LINE L2 -410 2904 2709 761 160 23 0 chr12 34381622 34381753 -109404702 + AluSq/x SINE Alu 2 135 -177 2422 87 0 0 chr12 34381753 34382051 -109404404 + AluSg SINE Alu 1 298 -12 735 241 141 11 chr12 34382398 34382668 -109403787 - L2 LINE L2 -587 2727 2423 2293 112 0 0 chr12 34382824 34383120 -109403335 + AluSx SINE Alu 1 296 -16 212 304 31 31 chr12 34383620 34383781 -109402674 + (CGGGG)n Simple_repeat Simple_repeat 4 164 0 402 168 21 94 chr12 34383805 34383996 -109402459 + (CGGGG)n Simple_repeat Simple_repeat 1 177 0 205 257 0 80 chr12 34383940 34384127 -109402328 + (CGAGG)n Simple_repeat Simple_repeat 1 172 0 * 1087 160 28 19 chr12 34384138 34384350 -109402105 + AluJb SINE Alu 85 298 -14 2501 97 46 0 chr12 34384860 34385210 -109401245 - MER51C LTR ERV1 0 640 275 659 109 11 0 chr12 34385210 34385302 -109401153 + AluSq/x SINE Alu 28 120 -192 857 125 26 33 chr12 34385303 34385455 -109401000 + LTR10E LTR ERV1 481 631 -2 750 199 86 27 chr12 34385459 34385671 -109400784 + HERVI LTR ERV1 5 225 -6424 1555 192 93 0 chr12 34385711 34386034 -109400421 + Harlequin LTR ERV1 2740 3092 -3804 4499 271 11 25 chr12 34386036 34386289 -109400166 + Harlequin LTR ERV1 6413 6668 -1117 2315 69 3 66 chr12 34386289 34386621 -109399834 - AluY SINE Alu 0 311 1 4499 271 11 25 chr12 34386621 34387620 -109398835 + Harlequin LTR ERV1 6668 7647 -138 420 119 0 79 chr12 34387687 34387788 -109398667 + LTR10E LTR ERV1 2 94 -539 525 238 62 31 chr12 34387810 34388003 -109398452 + LTR10E LTR ERV1 228 426 -207 1645 148 24 71 chr12 34388273 34388462 -109397993 - AluJb SINE Alu 0 307 137 2460 70 0 3 chr12 34388462 34388764 -109397691 - AluY SINE Alu -10 301 1 1645 148 24 71 chr12 34388764 34388895 -109397560 - AluJb SINE Alu -170 137 1 2153 136 0 13 chr12 34389019 34389328 -109397127 - AluSx SINE Alu -7 305 1 2162 88 0 38 chr12 34389649 34389968 -109396487 - AluY SINE Alu -4 307 1 2225 220 23 6 chr12 34390027 34390593 -109395862 - L1M4 LINE L1 -415 5763 5191 490 100 12 25 chr12 34390606 34390686 -109395769 + AluS SINE Alu 1 79 -234 1043 89 14 0 chr12 34390843 34390989 -109395466 + AluSg/x SINE Alu 162 309 0 2395 97 0 6 chr12 34391297 34391608 -109394847 - AluSx SINE Alu -3 309 1 33 25 0 0 chr12 34392092 34392132 -109394323 + AT_rich Low_complexity Low_complexity 1 40 0 337 232 116 36 chr12 34392460 34392598 -109393857 - L1ME4a LINE L1 -6 6115 5967 512 221 41 0 chr12 34392624 34392746 -109393709 - L1ME4a LINE L1 -209 5912 5786 617 170 0 0 chr12 34393068 34393168 -109393287 - AluJb SINE Alu -6 306 207 1984 100 4 0 chr12 34393904 34394163 -109392292 - AluSq SINE Alu -53 260 1 1194 178 92 23 chr12 34394163 34394467 -109391988 - Charlie1b DNA MER1_type -191 332 8 229 180 60 0 chr12 34394469 34394519 -109391936 + LTR37B LTR ERV1 138 190 -278 1825 149 7 0 chr12 34394546 34394827 -109391628 - AluSx SINE Alu -29 283 1 310 160 13 13 chr12 34394896 34394971 -109391484 + CT-rich Low_complexity Low_complexity 2 76 0 1608 149 104 7 chr12 34395857 34396126 -109390329 + AluJb SINE Alu 3 297 -15 186 133 0 0 chr12 34396979 34397009 -109389446 + (T)n Simple_repeat Simple_repeat 1 30 0 1153 95 0 6 chr12 34397009 34397167 -109389288 - LTR17 LTR ERV1 -454 326 170 748 103 0 0 chr12 34397216 34397323 -109389132 - AluY SINE Alu -7 304 198 2422 76 10 0 chr12 34397511 34397813 -109388642 - AluY SINE Alu -5 306 2 2431 88 0 0 chr12 34397818 34398114 -109388341 - AluSx SINE Alu -16 296 1 2178 121 3 0 chr12 34398304 34398602 -109387853 - AluSx SINE Alu -13 299 1 2218 116 3 0 chr12 34398602 34398896 -109387559 - AluSg SINE Alu -15 295 1 1661 158 14 4 chr12 34398949 34399249 -109387206 - AluJo SINE Alu 0 303 1 453 141 0 0 chr12 34399825 34399889 -109386566 - AluS SINE Alu -247 66 3 2148 125 3 0 chr12 34400187 34400484 -109385971 + AluSq SINE Alu 1 298 -15 231 330 0 10 chr12 34401869 34401969 -109384486 + MIR SINE MIR 163 261 -1 413 262 129 6 chr12 34402117 34402272 -109384183 - MIR SINE MIR -63 145 20 365 267 12 0 chr12 34402403 34402489 -109383966 + MIR SINE MIR 71 157 -105 468 0 0 0 chr12 34402545 34402597 -109383858 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 1913 161 3 3 chr12 34402624 34402915 -109383540 - AluJb SINE Alu -21 291 1 21 0 0 0 chr12 34403198 34403219 -109383236 + AT_rich Low_complexity Low_complexity 1 21 0 2007 156 3 13 chr12 34403224 34403567 -109382888 + AluJb SINE Alu 1 312 0 2215 60 32 3 chr12 34404364 34404648 -109381807 - AluY SINE Alu -19 292 1 463 265 30 8 chr12 34404880 34405012 -109381443 - MIR SINE MIR -18 244 110 2570 75 67 20 chr12 34405481 34405839 -109380616 + THE1C LTR MaLR 1 375 0 1517 184 54 4 chr12 34406086 34406364 -109380091 - AluJb SINE Alu -20 292 1 308 211 120 38 chr12 34406445 34406578 -109379877 + L1ME4a LINE L1 5801 5944 -177 507 42 70 0 chr12 34406579 34406650 -109379805 + AluY SINE Alu 214 289 -22 228 67 0 0 chr12 34407368 34407398 -109379057 + (CA)n Simple_repeat Simple_repeat 1 30 0 379 324 56 17 chr12 34407761 34407940 -109378515 - MIR SINE MIR -40 222 37 2489 93 0 0 chr12 34408091 34408447 -109378008 - AluSx SINE Alu 0 356 1 2339 110 7 0 chr12 34408456 34408766 -109377689 - AluSx SINE Alu 0 312 1 3514 199 30 29 chr12 34408884 34408962 -109377493 + L1MB8 LINE L1 4713 4789 -1389 1269 194 29 98 chr12 34408962 34409348 -109377107 + MLT1A1 LTR MaLR 5 363 -2 3514 199 30 29 chr12 34409348 34409729 -109376726 + L1MB8 LINE L1 4789 5168 -1010 1889 126 66 0 chr12 34409729 34410015 -109376440 - AluSx SINE Alu -7 305 1 3514 199 30 29 chr12 34410015 34410654 -109375801 + L1MB8 LINE L1 5168 5812 -366 2351 78 0 69 chr12 34410654 34410801 -109375654 + AluSp SINE Alu 1 115 -198 2388 48 0 21 chr12 34410801 34411126 -109375329 + AluY SINE Alu 1 319 0 2351 78 0 69 chr12 34411126 34411310 -109375145 + AluSp SINE Alu 115 310 -3 3514 199 30 29 chr12 34411310 34411526 -109374929 + L1MB8 LINE L1 5812 6026 -152 8442 51 1 0 chr12 34411526 34412491 -109373964 + LTR5 LTR ERVK 1 966 -3 2223 115 0 0 chr12 34412786 34413073 -109373382 - AluSx SINE Alu -24 288 2 1001 296 89 75 chr12 34413086 34413584 -109372871 + L2 LINE L2 1821 2336 -978 2389 97 0 0 chr12 34413584 34413884 -109372571 + AluSx SINE Alu 1 300 -12 1001 296 89 75 chr12 34413884 34414208 -109372247 + L2 LINE L2 2336 2654 -660 23 0 0 0 chr12 34414241 34414264 -109372191 + AT_rich Low_complexity Low_complexity 1 23 0 852 134 0 16 chr12 34414264 34414391 -109372064 - AluJb SINE Alu -187 125 1 252 334 53 75 chr12 34414396 34414591 -109371864 + L2 LINE L2 2698 2880 -433 1913 142 3 32 chr12 34414591 34414907 -109371548 - AluJo SINE Alu -4 308 2 252 334 53 75 chr12 34414907 34415086 -109371369 + L2 LINE L2 2880 3061 -252 281 230 274 0 chr12 34415180 34415293 -109371162 - MIR SINE MIR -82 180 37 2374 99 3 6 chr12 34415300 34415613 -109370842 - AluSx SINE Alu 0 312 1 1527 203 20 7 chr12 34415613 34415908 -109370547 - AluJo SINE Alu -13 299 1 1959 163 13 0 chr12 34416041 34416347 -109370108 + AluJo SINE Alu 1 310 -2 1997 128 45 3 chr12 34417125 34417414 -109369041 - AluSx SINE Alu -11 301 1 234 0 0 0 chr12 34417424 34417450 -109369005 + (T)n Simple_repeat Simple_repeat 1 26 0 374 278 136 0 chr12 34417866 34418028 -109368427 + MIR SINE MIR 79 262 0 23 0 0 0 chr12 34418721 34418744 -109367711 + GC_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr12 34421541 34421577 -109364878 + AT_rich Low_complexity Low_complexity 1 36 0 2164 36 0 0 chr12 34422775 34423026 -109363429 + L1PA3 LINE L1 5904 6154 -1 1581 102 0 0 chr12 34423620 34423858 -109362597 - AluY SINE Alu 0 313 76 21 89 0 0 chr12 34423859 34423915 -109362540 + AT_rich Low_complexity Low_complexity 1 56 0 2359 102 3 0 chr12 34424028 34424332 -109362123 - AluSp SINE Alu -8 305 1 291 259 64 43 chr12 34424886 34425075 -109361380 - MIR SINE MIR -21 241 50 1160 178 28 112 chr12 34425412 34425733 -109360722 - AluJb SINE Alu -6 296 3 1840 168 0 16 chr12 34425737 34425902 -109360553 - AluSx SINE Alu -14 298 139 2186 102 7 10 chr12 34425902 34426196 -109360259 - AluSg SINE Alu -17 293 1 1840 168 0 16 chr12 34426196 34426333 -109360122 - AluSx SINE Alu -173 139 1 1724 155 11 18 chr12 34426405 34426689 -109359766 - AluJb SINE Alu -10 302 21 23 0 0 0 chr12 34426697 34426720 -109359735 + AT_rich Low_complexity Low_complexity 1 23 0 803 135 0 0 chr12 34427071 34427182 -109359273 - FLAM_C SINE Alu -32 111 1 207 170 0 0 chr12 34427406 34427453 -109359002 + T-rich Low_complexity Low_complexity 1 47 0 300 119 0 0 chr12 34428460 34428519 -109357936 + (TC)n Simple_repeat Simple_repeat 2 60 0 969 184 25 0 chr12 34428541 34428704 -109357751 - AluJ SINE Alu -26 286 120 893 176 0 34 chr12 34428737 34428885 -109357570 - AluJ SINE Alu -169 143 1 610 268 79 30 chr12 34429029 34429294 -109357161 + L3 LINE CR1 1297 1574 -3 375 169 0 0 chr12 34429687 34429758 -109356697 + (TA)n Simple_repeat Simple_repeat 2 72 0 2277 92 7 0 chr12 34429758 34430050 -109356405 - AluSp SINE Alu -19 294 1 2315 64 4 4 chr12 34430062 34430402 -109356053 - AluY SINE Alu 0 340 1 1996 146 30 9 chr12 34430435 34430771 -109355684 - MER2 DNA MER2_type -1 343 1 652 258 184 12 chr12 34430841 34431167 -109355288 - L2 LINE L2 0 3313 2932 339 287 90 36 chr12 34431376 34431543 -109354912 + MER5B DNA MER1_type 2 177 -1 1953 144 4 0 chr12 34431613 34431916 -109354539 + AluSx SINE Alu 3 306 0 205 243 0 0 chr12 34432893 34432930 -109353525 + polypurine Low_complexity Low_complexity 2 38 0 2080 135 0 3 chr12 34432986 34433289 -109353166 - AluSx SINE Alu -10 302 1 2264 60 0 122 chr12 34433338 34433690 -109352765 + AluY SINE Alu 1 309 -2 454 300 17 43 chr12 34434146 34434379 -109352076 - L2 LINE L2 -55 3258 3032 * 658 197 87 16 chr12 34434375 34434558 -109351897 - L2 LINE L2 -410 2904 2709 2306 84 3 3 chr12 34434766 34435065 -109351390 + AluSx SINE Alu 1 299 -13 196 288 17 0 chr12 34435356 34435415 -109351040 - L2 LINE L2 0 3272 3213 409 274 149 19 chr12 34435509 34435717 -109350738 + MIR SINE MIR 20 254 -8 209 33 33 0 chr12 34435730 34435760 -109350695 + (TAA)n Simple_repeat Simple_repeat 2 32 0 194 291 114 39 chr12 34435780 34436034 -109350421 - L2 LINE L2 -189 3083 2811 215 300 22 22 chr12 34436652 34436742 -109349713 - L2 LINE L2 -541 2773 2684 1917 151 3 20 chr12 34436933 34437238 -109349217 + AluJb SINE Alu 1 300 -12 2220 120 0 17 chr12 34437646 34437947 -109348508 + AluSx SINE Alu 1 296 -16 21 36 0 0 chr12 34437957 34437985 -109348470 + AT_rich Low_complexity Low_complexity 1 28 0 1080 268 45 53 chr12 34438040 34438796 -109347659 - L1MC/D LINE L1 -743 5403 4698 2299 109 0 0 chr12 34439075 34439377 -109347078 - AluSx SINE Alu -10 302 1 925 233 0 0 chr12 34439935 34440111 -109346344 - AluJb SINE Alu -3 309 134 2012 130 27 0 chr12 34440111 34440404 -109346051 - AluSx SINE Alu -11 301 1 2291 57 46 0 chr12 34440944 34441227 -109345228 - AluY SINE Alu -15 296 1 2147 114 10 0 chr12 34441582 34441871 -109344584 - AluSx SINE Alu -20 292 1 23 0 0 0 chr12 34441999 34442022 -109344433 + AT_rich Low_complexity Low_complexity 1 23 0 551 284 77 82 chr12 34442480 34442871 -109343584 - L2 LINE L2 -3 3310 2922 2384 94 0 0 chr12 34442871 34443168 -109343287 + AluSg SINE Alu 1 297 -13 735 241 141 11 chr12 34443515 34443785 -109342670 - L2 LINE L2 -587 2727 2423 2262 115 0 0 chr12 34443941 34444237 -109342218 + AluSx SINE Alu 1 296 -16 2411 80 0 0 chr12 34444517 34444816 -109341639 - AluY SINE Alu -12 299 1 325 311 22 49 chr12 34445180 34445363 -109341092 + L3 LINE CR1 1328 1505 -72 278 303 30 20 chr12 34445654 34445753 -109340702 + Charlie8 DNA MER1_type 121 220 -2197 316 119 45 0 chr12 34445757 34445824 -109340631 + C-rich Low_complexity Low_complexity 3 72 0 2237 114 3 0 chr12 34445824 34446123 -109340332 - AluSx SINE Alu -12 300 1 1713 187 3 7 chr12 34446123 34446422 -109340033 - AluJb SINE Alu 0 312 14 2033 152 0 0 chr12 34447822 34448124 -109338331 - AluSx SINE Alu -10 302 1 2242 112 0 3 chr12 34448539 34448834 -109337621 - AluSx SINE Alu -18 294 1 274 366 139 28 chr12 34448849 34449065 -109337390 - MIR SINE MIR 0 262 23 182 224 0 13 chr12 34449163 34449194 -109337261 + (TA)n Simple_repeat Simple_repeat 1 31 -44 1749 178 8 37 chr12 34449194 34449571 -109336884 + MER47A DNA MER2_type 1 366 0 182 224 0 13 chr12 34449571 34449615 -109336840 + (TA)n Simple_repeat Simple_repeat 31 75 0 222 62 0 0 chr12 34450089 34450121 -109336334 + (TG)n Simple_repeat Simple_repeat 1 32 0 2233 96 7 3 chr12 34450294 34450595 -109335860 - AluSc SINE Alu -7 302 1 185 0 40 0 chr12 34451202 34451227 -109335228 + (TTG)n Simple_repeat Simple_repeat 2 27 0 975 51 8 0 chr12 34451229 34451347 -109335108 - AluSg/x SINE Alu -24 285 167 2353 89 3 0 chr12 34452207 34452509 -109333946 - AluSx SINE Alu -9 303 1 218 245 137 20 chr12 34452586 34452688 -109333767 + L2 LINE L2 3197 3310 -3 2339 99 3 3 chr12 34452859 34453172 -109333283 + AluSq SINE Alu 1 313 0 416 50 0 17 chr12 34453180 34453240 -109333215 + (TCTA)n Simple_repeat Simple_repeat 1 59 0 188 235 61 52 chr12 34453708 34453823 -109332632 + L2 LINE L2 3080 3195 -118 1759 235 97 67 chr12 34453872 34454922 -109331533 - L1ME3A LINE L1 -16 6154 5078 511 311 0 0 chr12 34456652 34456774 -109329681 - L2 LINE L2 -14 3258 3137 204 297 81 43 chr12 34457019 34457204 -109329251 - L2 LINE L2 -858 2456 2265 478 204 12 31 chr12 34457504 34457666 -109328789 + CT-rich Low_complexity Low_complexity 4 162 0 1693 177 37 3 chr12 34457673 34457967 -109328488 - AluJo SINE Alu -8 304 1 1707 194 0 10 chr12 34458592 34458891 -109327564 + AluJb SINE Alu 1 296 -16 2008 150 0 0 chr12 34459474 34459768 -109326687 + AluSx SINE Alu 2 295 -17 1304 214 31 21 chr12 34460425 34460627 -109325828 - MLT1A1 LTR MaLR -73 292 85 2710 109 37 0 chr12 34460627 34460977 -109325478 - THE1B LTR MaLR -1 363 1 1304 214 31 21 chr12 34460977 34461063 -109325392 - MLT1A1 LTR MaLR -280 85 1 277 238 32 0 chr12 34461412 34461475 -109324980 - MER91B DNA MER1_type -125 65 1 2158 96 0 0 chr12 34462691 34462972 -109323483 - AluSx SINE Alu -11 301 21 1560 164 96 11 chr12 34462981 34463261 -109323194 - AluJo SINE Alu -8 304 1 3251 153 11 11 chr12 34463648 34464172 -109322283 - L1PA16 LINE L1 -2 6164 5641 1437 173 4 0 chr12 34464251 34464488 -109321967 + AluJb SINE Alu 42 279 -33 330 181 43 9 chr12 34464488 34464604 -109321851 + (TA)n Simple_repeat Simple_repeat 2 121 0 216 170 38 19 chr12 34467664 34467717 -109318738 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 221 224 0 59 chr12 34467724 34467809 -109318646 + MIR SINE MIR 183 262 0 332 266 11 11 chr12 34468192 34468286 -109318169 - Zaphod DNA AcHobo 0 4031 3938 586 229 65 18 chr12 34468586 34468756 -109317699 + MIR SINE MIR 15 192 -70 706 153 21 90 chr12 34468756 34468832 -109317623 + AluJb SINE Alu 2 65 -247 2467 80 0 6 chr12 34468832 34469144 -109317311 - AluSq SINE Alu -3 310 1 706 153 21 90 chr12 34469144 34469211 -109317244 + AluJb SINE Alu 65 135 -177 248 267 107 0 chr12 34469230 34469305 -109317150 + MIR SINE MIR 180 262 0 354 266 65 57 chr12 34469505 34469629 -109316826 + L2 LINE L2 3145 3269 -3 2255 100 3 0 chr12 34469678 34469969 -109316486 - AluSx SINE Alu -20 292 1 464 267 71 53 chr12 34470662 34470887 -109315568 + MIR SINE MIR 32 260 -2 346 333 23 38 chr12 34472458 34472590 -109313865 + L2 LINE L2 3137 3266 -6 353 274 58 16 chr12 34473185 34473358 -109313097 + MIR SINE MIR 81 261 -1 3370 155 42 33 chr12 34473413 34473435 -109313020 + L1MB8 LINE L1 5146 5166 -1012 1758 133 0 84 chr12 34473435 34473757 -109312698 + AluJo SINE Alu 1 295 -17 3370 155 42 33 chr12 34473757 34474512 -109311943 + L1MB8 LINE L1 5166 5919 -259 1847 150 6 26 chr12 34474512 34474825 -109311630 - AluJb SINE Alu -5 307 1 487 283 0 26 chr12 34475028 34475180 -109311275 + MIR SINE MIR 70 217 -45 506 312 7 0 chr12 34476156 34476294 -109310161 + MER91B DNA MER1_type 1 139 -51 6046 48 39 17 chr12 34476445 34476999 -109309456 + MER4E LTR ERV1 1 577 -189 2426 79 3 10 chr12 34476999 34477303 -109309152 - AluSc SINE Alu -7 302 1 6046 48 39 17 chr12 34477303 34477498 -109308957 + MER4E LTR ERV1 577 766 0 638 147 101 0 chr12 34477660 34477789 -109308666 - L1MA8 LINE L1 -2 6289 6148 659 62 73 0 chr12 34478278 34478374 -109308081 - L1MA8 LINE L1 -141 6150 6048 1281 28 0 0 chr12 34478595 34478739 -109307716 + L1PA5 LINE L1 6011 6154 0 921 187 39 124 chr12 34478840 34479171 -109307284 + MER46C DNA MER2_type 20 322 -16 27 49 0 0 chr12 34479592 34479633 -109306822 + AT_rich Low_complexity Low_complexity 1 41 0 669 241 21 7 chr12 34479668 34479813 -109306642 - MER58A DNA MER1_type 0 154 8 424 254 25 8 chr12 34479820 34479938 -109306517 - L2 LINE L2 -504 2810 2691 942 125 6 85 chr12 34479940 34480018 -109306437 + FRAM SINE Alu 1 59 -253 2153 123 0 7 chr12 34480018 34480319 -109306136 - AluSx SINE Alu -13 299 1 942 125 6 85 chr12 34480319 34480416 -109306039 + FRAM SINE Alu 59 162 -14 440 295 199 35 chr12 34480428 34480794 -109305661 - L2 LINE L2 -614 2700 2275 1396 293 119 33 chr12 34480800 34481506 -109304949 - L2 LINE L2 -1971 1343 577 252 232 14 29 chr12 34481522 34481591 -109304864 + MIR SINE MIR 81 148 -60 878 112 0 0 chr12 34482296 34482412 -109304043 + AluSq/x SINE Alu 1 116 -196 728 156 0 0 chr12 34482430 34482539 -109303916 + AluJb SINE Alu 196 304 -8 2355 104 0 3 chr12 34482617 34482924 -109303531 + AluSx SINE Alu 1 306 -6 1271 189 0 9 chr12 34482950 34483162 -109303293 + AluJo SINE Alu 3 212 -100 250 282 107 0 chr12 34483431 34483534 -109302921 + L1MC4a LINE L1 5687 5800 -2008 528 201 255 27 chr12 34483686 34483835 -109302620 - AluSg/x SINE Alu -16 294 112 1564 196 24 0 chr12 34483835 34484131 -109302324 - AluJo SINE Alu -9 303 1 325 291 177 44 chr12 34484133 34484336 -109302119 - L1MC/D LINE L1 -469 5652 5444 335 268 52 31 chr12 34484720 34484817 -109301638 - L2 LINE L2 -42 3230 3132 507 332 142 23 chr12 34484927 34485279 -109301176 - L2 LINE L2 -418 2896 2503 1914 147 3 3 chr12 34485626 34485919 -109300536 + AluSx SINE Alu 18 310 -2 553 287 77 40 chr12 34486338 34486610 -109299845 - L2 LINE L2 0 3313 3032 * 721 182 86 27 chr12 34486602 34486789 -109299666 - L2 LINE L2 -408 2906 2709 2083 114 0 20 chr12 34486997 34487296 -109299159 + AluSx SINE Alu 1 293 -19 353 265 53 29 chr12 34487446 34487616 -109298839 + L1MC4a LINE L1 5880 6053 -1755 22 0 0 0 chr12 34488033 34488055 -109298400 + AT_rich Low_complexity Low_complexity 1 22 0 1981 127 0 0 chr12 34488383 34488659 -109297796 + AluSx SINE Alu 1 276 -36 414 0 0 0 chr12 34488666 34488712 -109297743 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 231 233 183 0 chr12 34489080 34489200 -109297255 + L1ME4a LINE L1 5977 6118 -3 1504 165 0 90 chr12 34490260 34490581 -109295874 + AluJo SINE Alu 3 294 -18 650 192 0 0 chr12 34490674 34490773 -109295682 + AluJ/FLAM SINE Alu 3 101 -211 2409 48 3 3 chr12 34490917 34491206 -109295249 + AluY SINE Alu 1 289 -22 2031 112 7 7 chr12 34493382 34493693 -109292762 + AluSq SINE Alu 1 311 0 473 110 0 0 chr12 34493693 34493766 -109292689 + AluSp/q SINE Alu 236 308 -5 1463 194 0 38 chr12 34494322 34494636 -109291819 - AluJo SINE Alu -10 302 1 1577 153 49 65 chr12 34494703 34495011 -109291444 - AluJb SINE Alu -9 303 1 2163 142 173 14 chr12 34495013 34495532 -109290923 + MER39 LTR ERV1 44 686 -21 1024 186 145 9 chr12 34495532 34495753 -109290702 - AluSg SINE Alu -59 251 1 761 248 28 64 chr12 34495986 34496268 -109290187 + Charlie2 DNA MER1_type 37 308 -2554 2291 173 165 39 chr12 34496273 34496996 -109289459 + Charlie2 DNA MER1_type 1864 2677 -185 1606 158 32 28 chr12 34497592 34497876 -109288579 - AluSx SINE Alu -27 285 1 1732 139 0 0 chr12 34497975 34498213 -109288242 - AluSx SINE Alu -16 296 59 688 241 76 0 chr12 34498272 34498430 -109288025 - MER96 DNA MER1_type -4 171 2 3383 72 7 35 chr12 34498562 34498720 -109287735 + MER41A LTR ERV1 1 162 -392 2194 114 7 0 chr12 34498720 34499026 -109287429 + AluSg SINE Alu 1 308 -2 3383 72 7 35 chr12 34499026 34499328 -109287127 + MER41A LTR ERV1 162 448 -106 884 98 8 0 chr12 34500056 34500188 -109286267 + MER41B LTR ERV1 503 635 0 743 147 0 0 chr12 34500199 34500301 -109286154 + FLAM_C SINE Alu 22 123 -20 183 42 0 0 chr12 34500302 34500326 -109286129 + (TAA)n Simple_repeat Simple_repeat 1 24 0 2239 113 0 13 chr12 34500334 34500645 -109285810 + AluSc SINE Alu 1 307 -2 385 281 170 0 chr12 34500736 34500889 -109285566 - MER91A DNA MER1_type 0 196 18 557 191 37 15 chr12 34501262 34501398 -109285057 - MIR SINE MIR 0 262 124 211 235 61 52 chr12 34502269 34502384 -109284071 - L2 LINE L2 -118 3195 3080 416 50 0 17 chr12 34502852 34502912 -109283543 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 2301 96 3 10 chr12 34502919 34503233 -109283222 - AluSq SINE Alu -1 312 1 249 245 137 20 chr12 34503404 34503506 -109282949 - L2 LINE L2 -3 3310 3197 2359 90 0 0 chr12 34503583 34503883 -109282572 + AluSx SINE Alu 1 300 -12 240 234 16 16 chr12 34504882 34504946 -109281509 + MLT1J2 LTR MaLR 72 135 -315 1456 241 92 53 chr12 34504957 34505527 -109280928 - MER21A LTR ERV1 -46 885 179 2055 126 0 10 chr12 34506321 34506623 -109279832 - AluSx SINE Alu -13 299 1 235 321 122 15 chr12 34506737 34506868 -109279587 + MIR SINE MIR 62 206 -56 888 177 0 43 chr12 34506919 34507083 -109279372 - FRAM SINE Alu -13 163 7 345 238 111 35 chr12 34508007 34508179 -109278276 + Charlie7 DNA MER1_type 2419 2603 -9 705 155 39 23 chr12 34508180 34508309 -109278146 + AluSq/x SINE Alu 2 132 -181 2153 131 6 10 chr12 34508446 34508759 -109277696 + AluSx SINE Alu 1 312 0 359 277 10 0 chr12 34509035 34509136 -109277319 - MIR SINE MIR -57 205 104 1637 162 27 40 chr12 34509137 34509433 -109277022 - AluJo SINE Alu -15 297 6 2043 117 28 0 chr12 34509808 34510099 -109276356 - AluSx SINE Alu -13 299 1 1880 153 57 33 chr12 34510158 34510524 -109275931 - THE1C LTR MaLR 0 375 1 676 140 15 88 chr12 34511002 34511138 -109275317 - FLAM_C SINE Alu 0 143 18 214 148 0 56 chr12 34512071 34512125 -109274330 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1965 159 0 3 chr12 34512254 34512563 -109273892 - AluJb SINE Alu -4 308 1 1154 193 15 36 chr12 34512591 34512865 -109273590 - LTR29 LTR ERV1 -218 404 137 537 30 0 0 chr12 34512904 34512971 -109273484 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 1582 177 3 18 chr12 34512973 34513256 -109273199 - AluJb SINE Alu -31 281 3 305 23 0 23 chr12 34513257 34513300 -109273155 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2107 122 0 0 chr12 34513300 34513586 -109272869 - AluSq SINE Alu -27 286 1 562 135 87 0 chr12 34513608 34513712 -109272743 + L1MB5 LINE L1 5403 5515 -663 630 144 99 0 chr12 34513712 34513807 -109272648 + L1MB5 LINE L1 6045 6166 -8 444 189 21 0 chr12 34513814 34513909 -109272546 - Charlie5 DNA MER1_type -2502 110 14 23 0 0 0 chr12 34514024 34514047 -109272408 + AT_rich Low_complexity Low_complexity 1 23 0 250 319 178 6 chr12 34514998 34515155 -109271300 + MIR SINE MIR 48 231 -31 228 306 0 0 chr12 34515325 34515387 -109271068 - MER5A DNA MER1_type 0 189 128 1255 190 31 19 chr12 34515390 34515648 -109270807 + AluJo SINE Alu 45 305 -7 402 185 0 4 chr12 34515653 34515724 -109270731 - MER5A DNA MER1_type -82 99 38 185 255 39 0 chr12 34516204 34516255 -109270200 - L2 LINE L2 -80 3233 3181 216 152 0 43 chr12 34516628 34516674 -109269781 + A-rich Low_complexity Low_complexity 2 45 0 416 173 0 86 chr12 34517065 34517204 -109269251 - FLAM_C SINE Alu -6 127 1 471 223 134 32 chr12 34517551 34517708 -109268747 + MIR SINE MIR 83 255 -7 1792 169 0 6 chr12 34518721 34519034 -109267421 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr12 34519057 34519089 -109267366 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr12 34519108 34519129 -109267326 + AT_rich Low_complexity Low_complexity 1 21 0 1562 174 10 27 chr12 34519252 34519545 -109266910 - AluJb SINE Alu -24 288 1 6009 125 44 26 chr12 34520179 34521525 -109264930 - L1MA6 LINE L1 -6 6294 4937 928 255 111 36 chr12 34521532 34521716 -109264739 - L1MC4 LINE L1 -135 7907 7738 1566 156 85 0 chr12 34521716 34521986 -109264469 - AluSx SINE Alu -19 293 1 928 255 111 36 chr12 34521986 34522468 -109263987 - L1MC4 LINE L1 -304 7738 7120 301 161 86 25 chr12 34522484 34522565 -109263890 - L1MC4 LINE L1 -1102 6940 6855 5276 104 19 51 chr12 34522937 34523420 -109263035 + MER4E LTR ERV1 1 449 -330 2162 123 3 3 chr12 34523420 34523730 -109262725 - AluSg SINE Alu 0 310 1 5276 104 19 51 chr12 34523730 34524051 -109262404 + MER4E LTR ERV1 449 779 0 2241 104 7 3 chr12 34524100 34524398 -109262057 - AluSx SINE Alu -13 299 1 753 233 0 0 chr12 34524422 34524555 -109261900 - FLAM_C SINE Alu 0 133 1 5065 233 21 17 chr12 34524566 34526279 -109260176 - L1PBa LINE L1 -5220 984 1 1169 180 14 178 chr12 34527864 34527979 -109258476 + AluSx SINE Alu 4 136 -166 2246 117 0 0 chr12 34527979 34528287 -109258168 + AluY SINE Alu 1 308 -3 1169 180 14 178 chr12 34528287 34528526 -109257929 + AluSx SINE Alu 136 300 -2 1675 99 5 0 chr12 34528526 34528749 -109257706 + AluSq SINE Alu 82 305 -8 192 40 0 0 chr12 34528940 34528965 -109257490 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1587 193 25 0 chr12 34528969 34529243 -109257212 - AluJb SINE Alu -31 281 1 549 0 0 0 chr12 34529433 34529494 -109256961 + (TATTG)n Simple_repeat Simple_repeat 1 61 0 1017 179 0 0 chr12 34530268 34530441 -109256014 - FRAM SINE Alu -9 167 1 1844 127 56 18 chr12 34530445 34530608 -109255847 - AluSq SINE Alu -18 295 140 360 0 0 0 chr12 34530608 34530648 -109255807 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2239 82 4 0 chr12 34530648 34530928 -109255527 - AluSp SINE Alu -31 282 2 1844 127 56 18 chr12 34530928 34531047 -109255408 - AluSq SINE Alu -172 141 1 551 254 18 0 chr12 34531080 34531194 -109255261 + FLAM_C SINE Alu 3 118 -25 2426 76 0 3 chr12 34531246 34531547 -109254908 - AluSx SINE Alu -12 300 1 421 256 60 23 chr12 34531558 34531691 -109254764 - HERVL LTR ERVL -2146 3508 3371 22 35 0 0 chr12 34532076 34532105 -109254350 + AT_rich Low_complexity Low_complexity 1 29 0 2173 101 28 0 chr12 34532318 34532605 -109253850 + AluSg SINE Alu 1 295 -15 213 390 20 0 chr12 34532703 34532803 -109253652 + L2 LINE L2 3179 3280 -33 200 390 59 43 chr12 34533006 34533193 -109253262 + L2 LINE L2 2634 2823 -491 1444 145 114 8 chr12 34533510 34533772 -109252683 + AluJo SINE Alu 10 299 -13 4449 163 85 51 chr12 34534063 34534672 -109251783 + L1PB2 LINE L1 4216 4803 -1348 2136 123 0 0 chr12 34534672 34534964 -109251491 + AluSx SINE Alu 11 302 -10 4449 163 85 51 chr12 34534964 34536127 -109250328 + L1PB2 LINE L1 4803 6052 -99 839 139 19 13 chr12 34536775 34536933 -109249522 - AluY SINE Alu 0 311 153 226 161 0 48 chr12 34536960 34537022 -109249433 + CT-rich Low_complexity Low_complexity 1 59 0 1805 170 23 10 chr12 34537022 34537328 -109249127 - AluSx SINE Alu -2 310 1 229 258 0 16 chr12 34537440 34537502 -109248953 - L1ME LINE L1 -537 5584 5524 947 198 119 34 chr12 34537542 34537835 -109248620 - L1ME1 LINE L1 -10 6156 5839 670 287 137 18 chr12 34538353 34538688 -109247767 - L2 LINE L2 -22 3291 2917 2182 112 0 0 chr12 34538886 34539182 -109247273 + AluY SINE Alu 1 296 -15 2170 94 0 42 chr12 34539188 34539495 -109246960 + AluSg1 SINE Alu 1 294 -15 1323 192 63 15 chr12 34539628 34539899 -109246556 - AluJb SINE Alu -28 284 1 2293 99 3 0 chr12 34540308 34540610 -109245845 + AluY SINE Alu 1 303 -8 237 229 71 14 chr12 34540806 34540876 -109245579 + L1MC/D LINE L1 5826 5899 -1909 213 306 134 8 chr12 34541933 34542067 -109244388 - MER5A DNA MER1_type 0 189 39 2193 111 0 3 chr12 34542445 34542742 -109243713 - AluSx SINE Alu -16 296 1 2152 110 3 3 chr12 34542744 34543036 -109243419 - AluSc SINE Alu -17 292 1 2105 151 20 67 chr12 34543038 34543258 -109243197 + MER4E LTR ERV1 268 458 -321 1719 182 0 19 chr12 34543258 34543565 -109242890 - AluJb SINE Alu -11 301 1 2105 151 20 67 chr12 34543565 34543795 -109242660 + MER4E LTR ERV1 458 697 -82 54 16 0 0 chr12 34543898 34543959 -109242496 + AT_rich Low_complexity Low_complexity 1 61 0 1483 178 31 34 chr12 34544025 34544318 -109242137 + AluJb SINE Alu 4 295 -17 1879 144 11 0 chr12 34544461 34544746 -109241709 + AluSx SINE Alu 13 300 -12 561 150 20 0 chr12 34545681 34545781 -109240674 + AluJb SINE Alu 199 300 -12 1813 178 111 111 chr12 34545989 34546063 -109240392 + MLT2B2 LTR ERVL 1 74 -441 2172 97 30 0 chr12 34546063 34546361 -109240094 + AluSx SINE Alu 1 307 -5 1813 178 111 111 chr12 34546361 34546538 -109239917 + MLT2B2 LTR ERVL 74 250 -265 2021 119 23 20 chr12 34546538 34546841 -109239614 + AluSx SINE Alu 1 304 -8 1813 178 111 111 chr12 34546841 34547095 -109239360 + MLT2B2 LTR ERVL 249 507 -8 517 86 0 0 chr12 34547347 34547417 -109239038 - AluSp/q SINE Alu -11 302 233 1720 146 11 7 chr12 34547417 34547697 -109238758 + AluJb SINE Alu 22 302 -10 320 231 103 79 chr12 34547700 34547903 -109238552 - MLT1J LTR MaLR -66 445 238 2013 132 3 7 chr12 34547971 34548267 -109238188 + AluSx SINE Alu 1 295 -17 231 246 18 0 chr12 34548487 34548544 -109237911 - L1MC4 LINE L1 -192 7850 7793 622 125 0 0 chr12 34548643 34548731 -109237724 - AluSp/q SINE Alu -9 304 217 2249 101 13 0 chr12 34548773 34549079 -109237376 - AluY SINE Alu -1 310 1 375 179 60 0 chr12 34549080 34549164 -109237291 - L1MC/D LINE L1 -2368 5440 5352 180 152 0 0 chr12 34549217 34549250 -109237205 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 228 264 64 64 chr12 34549754 34549832 -109236623 - L2 LINE L2 -10 3262 3182 1739 148 30 33 chr12 34549832 34550136 -109236319 + AluJo SINE Alu 1 303 -9 228 264 64 64 chr12 34550136 34550167 -109236288 - L2 LINE L2 -89 3183 3153 220 323 182 0 chr12 34551273 34551372 -109235083 - MIR SINE MIR -72 190 74 4666 146 126 88 chr12 34551639 34552219 -109234236 - L1MCa LINE L1 -4502 1924 1368 385 123 31 0 chr12 34552219 34552284 -109234171 + MADE1 DNA Mariner 1 67 -13 4666 146 126 88 chr12 34552284 34552680 -109233775 - L1MCa LINE L1 -5058 1368 989 2101 128 20 0 chr12 34552680 34552985 -109233470 + AluSq SINE Alu 1 311 -2 4666 146 126 88 chr12 34552985 34553222 -109233233 - L1MCa LINE L1 -5437 989 597 312 27 0 0 chr12 34553552 34553589 -109232866 + (CA)n Simple_repeat Simple_repeat 2 38 0 666 160 0 19 chr12 34553640 34553746 -109232709 - FRAM SINE Alu -4 172 69 1930 142 0 0 chr12 34554128 34554409 -109232046 + AluSq SINE Alu 1 281 -32 545 126 262 39 chr12 34554518 34554621 -109231834 + FLAM_C SINE Alu 3 128 -5 1005 200 39 18 chr12 34555022 34555253 -109231202 + L1MB3 LINE L1 5900 6133 -50 1436 172 61 4 chr12 34555253 34555514 -109230941 - AluJb SINE Alu -12 300 25 1971 127 3 59 chr12 34555611 34555935 -109230520 + AluSx SINE Alu 2 307 -5 741 132 9 0 chr12 34556051 34556157 -109230298 + AluJb SINE Alu 24 130 -182 498 193 111 22 chr12 34557644 34557745 -109228710 + MER58B DNA MER1_type 193 310 -2110 2316 140 17 6 chr12 34557745 34558102 -109228353 + MER46B DNA MER2_type 1 236 0 498 193 111 22 chr12 34558102 34558135 -109228320 + MER58B DNA MER1_type 310 339 -2 26 50 0 0 chr12 34558438 34558478 -109227977 + GC_rich Low_complexity Low_complexity 1 40 0 2101 91 42 0 chr12 34560298 34560584 -109225871 - AluSp SINE Alu -15 298 1 2178 121 3 0 chr12 34560774 34561072 -109225383 - AluSx SINE Alu -13 299 1 1257 107 17 0 chr12 34561072 34561250 -109225205 - AluSc SINE Alu -15 294 114 34 42 0 0 chr12 34561569 34561617 -109224838 + AT_rich Low_complexity Low_complexity 1 48 0 21 57 0 0 chr12 34562335 34562370 -109224085 + AT_rich Low_complexity Low_complexity 1 35 0 426 288 8 16 chr12 34562872 34562997 -109223458 + FRAM SINE Alu 3 126 -40 764 142 122 14 chr12 34563877 34564025 -109222430 - AluJb SINE Alu -15 297 134 1292 152 172 12 chr12 34564025 34564281 -109222174 - AluSc SINE Alu -2 297 1 193 114 0 29 chr12 34564572 34564607 -109221848 + L2 LINE L2 3203 3236 -36 471 69 0 0 chr12 34564611 34564669 -109221786 + MER39 LTR ERV1 1 58 -649 189 159 48 0 chr12 34565220 34565283 -109221172 + A-rich Low_complexity Low_complexity 1 66 0 906 281 83 22 chr12 34565509 34565957 -109220498 - L1PBa LINE L1 -6386 477 3 2735 119 22 75 chr12 34565970 34566274 -109220181 - LTR39 LTR ERV1 -304 479 160 1999 115 27 7 chr12 34566274 34566570 -109219885 - AluSx SINE Alu -8 304 3 2735 119 22 75 chr12 34566570 34566658 -109219797 - LTR39 LTR ERV1 -623 160 117 2331 91 3 3 chr12 34566658 34566967 -109219488 - AluSc SINE Alu 0 309 1 2735 119 22 75 chr12 34566967 34567079 -109219376 - LTR39 LTR ERV1 -666 117 1 352 138 17 0 chr12 34567081 34567139 -109219316 - L1MC1 LINE L1 -107 6226 6168 1674 173 0 42 chr12 34569031 34569337 -109217118 + AluJo SINE Alu 1 293 -19 1080 238 126 80 chr12 34569600 34570162 -109216293 - MLT1G LTR MaLR 0 590 3 663 200 7 35 chr12 34570162 34570307 -109216148 - FAM SINE Alu -4 45 1 419 231 37 9 chr12 34570493 34570601 -109215854 - AluSq/x SINE Alu -200 112 2 2031 126 13 0 chr12 34570823 34571124 -109215331 - AluSg SINE Alu -2 308 4 1870 152 14 14 chr12 34571472 34571768 -109214687 - AluJo SINE Alu -16 296 1 1978 166 0 0 chr12 34572331 34572638 -109213817 - AluJo SINE Alu -5 307 1 30 0 0 0 chr12 34574391 34574421 -109212034 + AT_rich Low_complexity Low_complexity 1 30 0 1828 125 17 44 chr12 34574421 34574581 -109211874 - AluSg SINE Alu -12 288 138 1984 98 40 11 chr12 34574581 34574735 -109211720 - AluSc SINE Alu -24 285 118 2513 74 0 3 chr12 34574735 34575045 -109211410 - AluY SINE Alu -2 309 1 1984 98 40 11 chr12 34575045 34575167 -109211288 - AluSc SINE Alu -191 118 1 1828 125 17 44 chr12 34575167 34575302 -109211153 - AluSg SINE Alu -162 138 1 1118 203 0 65 chr12 34575579 34575840 -109210615 + AluJo SINE Alu 35 278 -34 215 30 0 30 chr12 34575843 34575876 -109210579 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 394 255 173 1 chr12 34575877 34576130 -109210325 + L2 LINE L2 2712 3002 -311 265 203 98 98 chr12 34576141 34576284 -109210171 + L2 LINE L2 3149 3291 -22 673 115 0 0 chr12 34577098 34577194 -109209261 + AluY SINE Alu 1 96 -215 257 258 129 106 chr12 34577375 34577559 -109208896 - LTR33 LTR ERVL -152 369 176 2286 71 0 3 chr12 34577559 34577841 -109208614 - AluY SINE Alu -4 307 27 257 258 129 106 chr12 34577841 34577911 -109208544 - LTR33 LTR ERVL -345 176 109 2246 192 38 38 chr12 34577911 34578157 -109208298 + Charlie1b DNA MER1_type 1 246 -2515 868 104 0 22 chr12 34578157 34578292 -109208163 + FLAM_C SINE Alu 2 133 0 2246 192 38 38 chr12 34578292 34578566 -109207889 + Charlie1b DNA MER1_type 245 521 -2 306 238 100 0 chr12 34578568 34578648 -109207807 - LTR33 LTR ERVL -426 95 8 855 230 63 0 chr12 34578829 34579003 -109207452 + AluJb SINE Alu 106 290 -22 911 161 7 0 chr12 34579003 34579158 -109207297 - L1 LINE L1 -3462 2684 2529 * 4370 107 93 11 chr12 34579156 34579641 -109206814 + L1PBa LINE L1 2188 2767 -4095 2123 119 0 7 chr12 34579641 34579944 -109206511 + AluSx SINE Alu 1 301 -11 4370 107 93 11 chr12 34579944 34580271 -109206184 + L1PBa LINE L1 2767 3066 -3796 1133 289 83 16 chr12 34580547 34581104 -109205351 + L2 LINE L2 2113 2706 -608 713 260 39 5 chr12 34581111 34581319 -109205136 + L1ME1 LINE L1 5949 6163 -3 1730 159 7 14 chr12 34581359 34581648 -109204807 + AluSx SINE Alu 1 287 -25 27 0 0 0 chr12 34581649 34581676 -109204779 + AT_rich Low_complexity Low_complexity 1 27 0 1414 118 5 19 chr12 34581822 34582033 -109204422 + AluSg/x SINE Alu 88 295 -17 848 168 0 0 chr12 34582040 34582165 -109204290 + FLAM_C SINE Alu 1 125 -18 2447 77 0 13 chr12 34582189 34582499 -109203956 + AluY SINE Alu 1 306 -5 23 0 0 0 chr12 34583320 34583343 -109203112 + GC_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 34583392 34583414 -109203041 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr12 34583452 34583473 -109202982 + (G)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr12 34583478 34583503 -109202952 + GC_rich Low_complexity Low_complexity 1 25 0 1760 166 10 10 chr12 34583653 34583943 -109202512 - AluSx SINE Alu -22 290 1 313 217 0 0 chr12 34584214 34584274 -109202181 + MER69 DNA AcHobo 2 61 -2465 335 104 15 15 chr12 34584427 34584494 -109201961 + MER69 DNA AcHobo 2382 2448 -78 2255 104 0 22 chr12 34584496 34584838 -109201617 - AluSx SINE Alu 0 312 2 2587 37 0 0 chr12 34584848 34585143 -109201312 - AluY SINE Alu -16 295 1 1719 143 0 16 chr12 34585606 34585858 -109200597 + AluSx SINE Alu 50 297 -15 1429 210 17 7 chr12 34585936 34586226 -109200229 - AluJb SINE Alu -19 293 1 2293 86 13 3 chr12 34587531 34587832 -109198623 + AluSp SINE Alu 1 304 -9 908 232 46 8 chr12 34588240 34588477 -109197978 + AluJo SINE Alu 2 247 -65 2178 121 0 3 chr12 34588761 34589050 -109197405 + AluSx SINE Alu 1 288 -24 25 75 0 0 chr12 34589217 34589270 -109197185 + GC_rich Low_complexity Low_complexity 1 53 0 2320 79 28 0 chr12 34589925 34590216 -109196239 + AluSx SINE Alu 8 306 -6 25 31 0 0 chr12 34590786 34590818 -109195637 + GC_rich Low_complexity Low_complexity 1 32 0 2305 114 0 50 chr12 34591279 34591717 -109194738 - L1P LINE L1 -1474 4672 4257 993 151 69 0 chr12 34591717 34591876 -109194579 + AluJb SINE Alu 134 303 -9 671 124 16 54 chr12 34594467 34594596 -109191859 + FLAM_C SINE Alu 7 130 -13 2171 116 0 10 chr12 34594689 34594983 -109191472 + AluSg1 SINE Alu 1 291 -18 318 322 0 0 chr12 34596607 34596697 -109189758 + L1MC4 LINE L1 6614 6703 -1339 * 357 281 0 0 chr12 34596617 34596706 -109189749 - L1MC4 LINE L1 -1339 6703 6615 327 49 0 0 chr12 34596709 34596750 -109189705 + (TA)n Simple_repeat Simple_repeat 1 41 0 2371 100 10 3 chr12 34596750 34597059 -109189396 - AluSq SINE Alu -2 311 1 23 54 0 0 chr12 34597292 34597329 -109189126 + AT_rich Low_complexity Low_complexity 1 37 0 385 282 50 33 chr12 34597720 34597857 -109188598 + MIR SINE MIR 6 148 -114 1666 170 109 52 chr12 34597857 34598262 -109188193 - MSTC LTR MaLR 0 428 1 385 282 50 33 chr12 34598262 34598305 -109188150 + MIR SINE MIR 148 189 -73 1104 146 0 0 chr12 34598441 34598628 -109187827 + AluSg/x SINE Alu 126 312 0 1479 117 5 5 chr12 34599866 34600071 -109186384 - AluSx SINE Alu -107 205 1 2264 95 0 3 chr12 34600071 34600365 -109186090 - AluSc SINE Alu -16 293 1 604 98 19 2 chr12 34600394 34600490 -109185965 + LTR17 LTR ERV1 247 360 -354 2081 125 28 0 chr12 34601479 34601766 -109184689 + AluSx SINE Alu 4 298 -14 414 178 28 65 chr12 34602183 34602225 -109184230 - Charlie2 DNA MER1_type -13 2849 2807 1855 176 0 13 chr12 34602225 34602531 -109183924 + AluJb SINE Alu 1 302 -10 414 178 28 65 chr12 34602531 34602595 -109183860 - Charlie2 DNA MER1_type -55 2807 2747 1095 114 0 24 chr12 34602603 34602769 -109183686 + AluSq SINE Alu 1 162 -151 286 154 0 19 chr12 34604016 34604068 -109182387 + Alu SINE Alu 2 52 -247 230 0 33 0 chr12 34604219 34604249 -109182206 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr12 34604257 34604288 -109182167 + AT_rich Low_complexity Low_complexity 1 31 0 2171 106 20 0 chr12 34604300 34604593 -109181862 + AluSg SINE Alu 1 299 -11 2142 104 0 14 chr12 34604595 34604884 -109181571 + AluSx SINE Alu 1 285 -27 315 0 0 0 chr12 34604884 34604919 -109181536 + (CA)n Simple_repeat Simple_repeat 2 36 0 47 44 0 0 chr12 34605696 34605764 -109180691 + GC_rich Low_complexity Low_complexity 1 68 0 437 288 0 41 chr12 34605998 34606144 -109180311 + AluY SINE Alu 135 274 -27 3449 154 21 7 chr12 34607071 34607686 -109178769 + MER41B LTR ERV1 11 634 -1 655 153 21 90 chr12 34608471 34608547 -109177908 + AluJb SINE Alu 2 65 -247 2492 80 0 6 chr12 34608547 34608859 -109177596 - AluSq SINE Alu -3 310 1 655 153 21 90 chr12 34608859 34608926 -109177529 + AluJb SINE Alu 65 135 -177 231 267 107 0 chr12 34608945 34609020 -109177435 + MIR SINE MIR 180 262 0 316 266 65 57 chr12 34609220 34609344 -109177111 + L2 LINE L2 3145 3269 -3 2278 100 3 0 chr12 34609393 34609684 -109176771 - AluSx SINE Alu -20 292 1 404 267 71 53 chr12 34610377 34610602 -109175853 + MIR SINE MIR 32 260 -2 358 333 23 38 chr12 34612173 34612305 -109174150 + L2 LINE L2 3137 3266 -6 370 274 58 16 chr12 34612900 34613073 -109173382 + MIR SINE MIR 81 261 -1 25 40 0 20 chr12 34613127 34613150 -109173305 + AT_rich Low_complexity Low_complexity 1 23 -26 1962 157 0 10 chr12 34613150 34613456 -109172999 + AluJo SINE Alu 1 303 -9 25 40 0 20 chr12 34613456 34613482 -109172973 + AT_rich Low_complexity Low_complexity 23 49 0 288 232 116 36 chr12 34613810 34613948 -109172507 - L1ME4a LINE L1 -6 6115 5967 460 217 42 0 chr12 34613976 34614096 -109172359 - L1ME4a LINE L1 -211 5910 5786 610 170 0 0 chr12 34614418 34614518 -109171937 - AluJb SINE Alu -6 306 207 2356 36 0 4 chr12 34615683 34615963 -109170492 + AluY SINE Alu 1 279 -32 189 0 0 0 chr12 34615963 34615984 -109170471 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1256 102 6 0 chr12 34615984 34616150 -109170305 + AluSc SINE Alu 131 297 -12 956 152 36 85 chr12 34616493 34616552 -109169903 + MER20 DNA MER1_type 7 67 -152 396 0 0 0 chr12 34616552 34616596 -109169859 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2111 113 0 0 chr12 34616599 34616881 -109169574 - AluSx SINE Alu -30 282 1 956 152 36 85 chr12 34616881 34617041 -109169414 + MER20 DNA MER1_type 69 219 0 360 276 80 25 chr12 34617232 34617395 -109169060 + MIR SINE MIR 86 257 -5 268 243 14 0 chr12 34617395 34617465 -109168990 + L1ME4a LINE L1 5954 6024 -97 2267 109 0 7 chr12 34617899 34618201 -109168254 - AluSx SINE Alu -12 300 1 711 280 43 27 chr12 34618266 34618453 -109168002 + MIR SINE MIR 1 195 -67 231 36 0 0 chr12 34618453 34618481 -109167974 + (TG)n Simple_repeat Simple_repeat 2 29 0 711 280 43 27 chr12 34618481 34618550 -109167905 + MIR SINE MIR 195 261 -1 2096 100 28 3 chr12 34619131 34619422 -109167033 + AluSq SINE Alu 1 298 -15 967 90 0 8 chr12 34619885 34620019 -109166436 - FLAM_C SINE Alu 0 133 1 887 93 0 47 chr12 34620207 34620336 -109166119 - FLAM_C SINE Alu -10 123 1 265 181 0 111 chr12 34621139 34621183 -109165272 - MIR3 SINE MIR -12 196 161 668 166 251 0 chr12 34621183 34621358 -109165097 + MER20 DNA MER1_type 1 219 0 265 181 0 111 chr12 34621358 34621385 -109165070 - MIR3 SINE MIR -47 161 133 351 277 161 28 chr12 34621573 34621822 -109164633 + MLT1I LTR MaLR 66 347 -62 23 33 0 0 chr12 34622059 34622089 -109164366 + AT_rich Low_complexity Low_complexity 1 30 0 2087 135 0 0 chr12 34622092 34622380 -109164075 + AluSx SINE Alu 1 288 -24 306 0 0 0 chr12 34622381 34622415 -109164040 + (CA)n Simple_repeat Simple_repeat 2 35 0 415 261 99 0 chr12 34623149 34623260 -109163195 - L2 LINE L2 -1 3312 3191 2062 95 13 16 chr12 34623470 34623774 -109162681 - AluSx SINE Alu -9 303 1 1072 168 0 0 chr12 34624780 34624947 -109161508 + FRAM SINE Alu 1 166 -10 240 296 74 25 chr12 34625543 34625624 -109160831 + L2 LINE L2 3136 3220 -52 2122 126 0 3 chr12 34625741 34626042 -109160413 - AluSx SINE Alu -12 300 1 2617 217 27 22 chr12 34626115 34626784 -109159671 - L1MB7 LINE L1 0 6184 5513 2286 185 29 32 chr12 34626838 34627394 -109159061 - L1ME2 LINE L1 -9 6155 5602 2221 111 0 0 chr12 34627457 34627754 -109158701 + AluSx SINE Alu 1 297 -15 310 157 20 0 chr12 34628134 34628236 -109158219 + (TA)n Simple_repeat Simple_repeat 1 104 0 2142 130 7 0 chr12 34630133 34630433 -109156022 + AluSq SINE Alu 1 302 -11 500 249 109 36 chr12 34631259 34631452 -109155003 - HAL1 LINE L1 -2299 208 2 2191 102 0 0 chr12 34631562 34631857 -109154598 + AluSx SINE Alu 1 295 -17 2266 128 0 0 chr12 34632695 34633007 -109153448 - AluSx SINE Alu 0 312 1 1738 163 12 38 chr12 34633304 34633624 -109152831 - AluJo SINE Alu 0 312 1 2259 83 30 7 chr12 34633689 34633989 -109152466 - AluSg SINE Alu -3 307 1 282 123 0 70 chr12 34634028 34634085 -109152370 + LTR32 LTR ERVL 15 67 -404 2166 163 68 5 chr12 34634086 34634510 -109151945 + LTR32 LTR ERVL 15 465 -6 2398 69 3 0 chr12 34634719 34635009 -109151446 - AluSg SINE Alu -19 291 1 913 291 51 10 chr12 34635764 34636060 -109150395 - MLT1I LTR MaLR -2 407 100 319 325 30 6 chr12 34636256 34636425 -109150030 + MLT1J2 LTR MaLR 2 174 -276 442 133 60 0 chr12 34636753 34636836 -109149619 + MER3 DNA MER1_type 115 202 -7 228 105 53 0 chr12 34636804 34636842 -109149613 - MER3 DNA MER1_type -123 86 47 * 557 322 0 23 chr12 34637326 34637503 -109148952 + MIR3 SINE MIR 3 175 -33 267 178 4 110 chr12 34637557 34637664 -109148791 + MER110A LTR ERV1 80 159 -309 2401 91 0 0 chr12 34637816 34638123 -109148332 + AluSg SINE Alu 1 307 -3 710 192 96 6 chr12 34638130 34638297 -109148158 + L1PA16 LINE L1 5963 6144 -22 286 132 0 0 chr12 34638302 34638355 -109148100 - Alu SINE Alu -2 300 248 2245 102 3 0 chr12 34638369 34638662 -109147793 - AluSx SINE Alu -18 294 1 1572 98 0 14 chr12 34639158 34639372 -109147083 - AluSg/x SINE Alu -18 294 84 29 28 0 0 chr12 34639477 34639513 -109146942 + AT_rich Low_complexity Low_complexity 1 36 0 207 271 0 0 chr12 34639798 34639846 -109146609 + CT-rich Low_complexity Low_complexity 6 53 0 3936 237 52 24 chr12 34639987 34640124 -109146331 + L1M4c LINE L1 1974 2106 -4276 2382 87 0 0 chr12 34640124 34640423 -109146032 - AluSx SINE Alu -12 300 2 3936 237 52 24 chr12 34640423 34641803 -109144652 + L1M4c LINE L1 2106 3543 -2839 1140 113 41 10 chr12 34641803 34641997 -109144458 + Tigger1 DNA MER2_type 1 200 -2218 351 78 116 0 chr12 34641997 34642126 -109144329 + (TA)n Simple_repeat Simple_repeat 2 145 0 3786 139 40 53 chr12 34642131 34642575 -109143880 + Tigger1 DNA MER2_type 190 621 -1797 2206 102 7 16 chr12 34642575 34642880 -109143575 + AluSc SINE Alu 1 302 -7 3786 139 40 53 chr12 34642880 34643210 -109143245 + Tigger1 DNA MER2_type 621 954 -1464 * 4566 124 28 7 chr12 34643207 34643954 -109142501 + Tigger1 DNA MER2_type 1656 2418 0 9166 159 26 58 chr12 34643955 34645025 -109141430 + L1MA9 LINE L1 3543 4645 -1903 2197 88 3 3 chr12 34645025 34645351 -109141104 + AluSp SINE Alu 1 326 0 9166 159 26 58 chr12 34645351 34645417 -109141038 + L1MA9 LINE L1 4645 4712 -1836 670 145 68 0 chr12 34645417 34645534 -109140921 + FRAM SINE Alu 41 165 -11 9166 159 26 58 chr12 34645534 34647353 -109139102 + L1MA9 LINE L1 4712 6534 -14 2128 117 41 0 chr12 34647443 34647734 -109138721 - AluSx SINE Alu -9 303 1 2335 91 3 0 chr12 34648350 34648647 -109137808 + AluSp SINE Alu 2 299 -14 216 111 0 0 chr12 34648743 34648779 -109137676 + (TA)n Simple_repeat Simple_repeat 2 37 0 539 208 119 86 chr12 34649634 34649844 -109136611 - MLT1J LTR MaLR -3 508 286 5458 46 6 1 chr12 34649844 34650501 -109135954 - PABL_A LTR ERV1 0 660 1 539 208 119 86 chr12 34650501 34650559 -109135896 - MLT1J LTR MaLR -225 286 231 1994 160 0 0 chr12 34653024 34653336 -109133119 - AluJb SINE Alu 0 312 1 461 278 66 31 chr12 34653537 34653857 -109132598 + L1ME LINE L1 4909 5239 -907 1850 148 129 38 chr12 34653857 34654276 -109132179 + LTR32 LTR ERVL 15 471 0 609 268 31 38 chr12 34654442 34654492 -109131963 + L1ME LINE L1 5318 5367 -797 1992 149 10 3 chr12 34654492 34654793 -109131662 + AluJb SINE Alu 1 303 -9 609 268 31 38 chr12 34654793 34655003 -109131452 + L1ME LINE L1 5367 5576 -588 490 266 21 75 chr12 34655067 34655151 -109131304 + MER5B DNA MER1_type 1 88 -90 2358 201 56 30 chr12 34655151 34655718 -109130737 + MER119 DNA MER1_type 1 582 -1 490 266 21 75 chr12 34655718 34655821 -109130634 + MER5B DNA MER1_type 88 178 0 301 243 97 97 chr12 34655853 34656079 -109130376 + MER5C DNA MER1_type 2 227 -97 412 206 50 50 chr12 34656085 34656150 -109130305 - L1MA10 LINE L1 -9 6325 6261 1713 191 40 82 chr12 34656150 34656673 -109129782 - L1ME1 LINE L1 -65 6101 5601 247 252 47 47 chr12 34656677 34656749 -109129706 + MER5C DNA MER1_type 217 291 -33 2270 117 0 0 chr12 34656749 34657056 -109129399 + AluSx SINE Alu 1 307 -5 247 252 47 47 chr12 34657056 34657090 -109129365 + MER5C DNA MER1_type 290 323 -1 400 273 15 0 chr12 34657102 34657234 -109129221 + L1ME LINE L1 5685 5818 -344 370 251 111 85 chr12 34658453 34658652 -109127803 - MIR SINE MIR -11 251 48 870 211 119 18 chr12 34658708 34658935 -109127520 - MIR SINE MIR 0 262 13 1915 117 52 36 chr12 34659238 34659546 -109126909 - AluSq SINE Alu 0 313 1 217 224 179 0 chr12 34660163 34660230 -109126225 + L2 LINE L2 2988 3066 -247 687 201 134 0 chr12 34660271 34660450 -109126005 - MER3 DNA MER1_type -5 204 2 464 242 61 61 chr12 34660483 34660648 -109125807 + L2 LINE L2 3148 3312 -1 237 108 0 0 chr12 34662633 34662670 -109123785 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 181 0 0 0 chr12 34662847 34662867 -109123588 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2040 125 7 0 chr12 34662867 34663148 -109123307 - AluSx SINE Alu -29 283 1 7079 186 63 65 chr12 34663366 34663809 -109122646 - L1MC4a LINE L1 -13 7795 7353 2080 133 0 9 chr12 34663809 34664124 -109122331 - AluSx SINE Alu 0 312 1 7079 186 63 65 chr12 34664124 34665372 -109121083 - L1MC4a LINE L1 -455 7353 6105 2080 135 3 0 chr12 34665372 34665668 -109120787 + AluSx SINE Alu 1 297 -15 7079 186 63 65 chr12 34665668 34665834 -109120621 - L1MC4a LINE L1 -1703 6105 5940 2472 55 0 23 chr12 34666094 34666403 -109120052 + AluY SINE Alu 2 303 -8 21 0 0 0 chr12 34666471 34666492 -109119963 + AT_rich Low_complexity Low_complexity 1 21 0 377 197 13 26 chr12 34668150 34668226 -109118229 - AluJ/FRAM SINE Alu -8 294 220 935 211 17 0 chr12 34668737 34668917 -109117538 - MER5A DNA MER1_type -5 184 2 35 0 0 22 chr12 34670248 34670265 -109116190 + AT_rich Low_complexity Low_complexity 1 17 -28 8155 25 1 0 chr12 34670265 34671679 -109114776 + L1PA3 LINE L1 4737 6152 -3 35 0 0 22 chr12 34671679 34671707 -109114748 + AT_rich Low_complexity Low_complexity 17 45 0 281 24 49 0 chr12 34671774 34671815 -109114640 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2026 106 11 7 chr12 34671827 34672133 -109114322 + AluSg1 SINE Alu 1 307 0 772 260 63 27 chr12 34672734 34672985 -109113470 - MIR SINE MIR -3 259 2 912 199 74 98 chr12 34673066 34673392 -109113063 + MLT1A1 LTR MaLR 1 318 -47 3673 121 112 26 chr12 34673404 34673663 -109112792 - Tigger1 DNA MER2_type -1410 1008 773 2140 126 3 0 chr12 34673663 34673965 -109112490 + AluSx SINE Alu 3 305 -7 3673 121 112 26 chr12 34673965 34674473 -109111982 - Tigger1 DNA MER2_type -1645 773 125 328 232 21 32 chr12 34674761 34674856 -109111599 - MIR SINE MIR -1 261 168 2047 130 35 0 chr12 34675133 34675417 -109111038 - AluSx SINE Alu -18 294 1 3221 211 51 47 chr12 34675417 34676034 -109110421 - L1ME1 LINE L1 -56 6110 5497 2319 96 10 13 chr12 34676034 34676347 -109110108 - AluSq SINE Alu -1 312 1 3221 211 51 47 chr12 34676347 34676548 -109109907 - L1ME1 LINE L1 -669 5497 5292 2302 113 3 0 chr12 34676548 34676859 -109109596 - AluSx SINE Alu 0 312 1 3221 211 51 47 chr12 34676859 34676894 -109109561 - L1ME1 LINE L1 -874 5292 5259 1076 168 53 18 chr12 34678619 34678845 -109107610 - L1ME1 LINE L1 -1153 4993 4760 4604 252 80 25 chr12 34678846 34679391 -109107064 - L2 LINE L2 -477 2837 2324 2167 124 0 3 chr12 34679391 34679697 -109106758 + AluSx SINE Alu 1 305 -7 4604 252 80 25 chr12 34679697 34680609 -109105846 - L2 LINE L2 -990 2324 1299 853 226 0 0 chr12 34680677 34680823 -109105632 + FRAM SINE Alu 1 146 -30 468 77 0 0 chr12 34680823 34680888 -109105567 + (TAAA)n Simple_repeat Simple_repeat 2 66 0 1063 239 70 78 chr12 34680904 34681277 -109105178 - L2 LINE L2 -2606 708 339 1459 167 130 0 chr12 34681624 34681870 -109104585 + AluSx SINE Alu 1 278 -34 378 0 0 0 chr12 34681983 34682025 -109104430 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 8110 24 2 6 chr12 34682025 34683297 -109103158 - L1PA3 LINE L1 -13 6142 4871 1801 141 0 0 chr12 34683502 34683764 -109102691 + AluSx SINE Alu 40 301 -11 295 141 31 0 chr12 34683928 34683992 -109102463 + CT-rich Low_complexity Low_complexity 1 66 0 2345 97 7 0 chr12 34684739 34685049 -109101406 + AluSp SINE Alu 1 312 -1 1852 164 0 34 chr12 34685085 34685408 -109101047 - AluJo SINE Alu 0 312 1 246 224 143 31 chr12 34685842 34685926 -109100529 - MER106A DNA MER1_type -3 233 139 10549 116 25 44 chr12 34685926 34686113 -109100342 + Tigger1 DNA MER2_type 1 190 -2228 2349 88 10 7 chr12 34686113 34686419 -109100036 - AluSg SINE Alu -3 307 1 10549 116 25 44 chr12 34686419 34686534 -109099921 + Tigger1 DNA MER2_type 190 306 -2112 2159 116 0 7 chr12 34686534 34686819 -109099636 + AluSg SINE Alu 1 283 -27 10549 116 25 44 chr12 34686819 34687291 -109099164 + Tigger1 DNA MER2_type 306 785 -1633 2312 81 13 19 chr12 34687291 34687601 -109098854 - AluY SINE Alu -3 308 1 10549 116 25 44 chr12 34687601 34688546 -109097909 + Tigger1 DNA MER2_type 785 1690 -728 616 158 79 18 chr12 34688549 34688663 -109097792 + FLAM_C SINE Alu 2 122 -21 2645 131 17 7 chr12 34688672 34689084 -109097371 + Tigger1 DNA MER2_type 1673 2088 -330 2485 70 7 3 chr12 34689084 34689386 -109097069 + AluSq SINE Alu 1 303 -10 2396 81 3 3 chr12 34689386 34689695 -109096760 + AluY SINE Alu 1 309 -2 539 288 81 41 chr12 34690113 34690384 -109096071 - L2 LINE L2 0 3313 3032 * 721 182 86 27 chr12 34690376 34690563 -109095892 - L2 LINE L2 -408 2906 2709 2282 84 3 3 chr12 34690771 34691070 -109095385 + AluSx SINE Alu 1 299 -13 214 288 17 0 chr12 34691361 34691420 -109095035 - L2 LINE L2 0 3272 3213 471 274 149 19 chr12 34691514 34691722 -109094733 + MIR SINE MIR 20 254 -8 209 33 33 0 chr12 34691735 34691765 -109094690 + (TAA)n Simple_repeat Simple_repeat 2 32 0 303 343 50 0 chr12 34691785 34691925 -109094530 - L2 LINE L2 -189 3083 2937 3349 96 96 2 chr12 34693181 34693638 -109092817 + MER61D LTR ERV1 1 500 -1 1522 260 131 35 chr12 34693756 34694199 -109092256 + L2 LINE L2 1575 1974 -1340 2296 88 7 0 chr12 34694199 34694507 -109091948 - AluSx SINE Alu 0 312 1 2011 105 10 49 chr12 34694507 34694813 -109091642 - AluSx SINE Alu -18 294 1 1522 260 131 35 chr12 34694813 34695057 -109091398 + L2 LINE L2 1973 2329 -985 1572 166 76 0 chr12 34695057 34695334 -109091121 - AluJo SINE Alu -14 298 1 302 241 18 71 chr12 34695339 34695451 -109091004 - MLT1J LTR MaLR -78 433 328 530 307 74 5 chr12 34695511 34695726 -109090729 - MLT1J LTR MaLR -276 235 6 1734 169 6 32 chr12 34695885 34696199 -109090256 + AluJb SINE Alu 1 306 -6 518 271 42 30 chr12 34696774 34696940 -109089515 + Charlie8 DNA MER1_type 1 168 -2249 2321 68 0 0 chr12 34696941 34697220 -109089235 + AluY SINE Alu 1 279 -32 189 0 0 0 chr12 34697220 34697241 -109089214 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1252 102 6 0 chr12 34697241 34697407 -109089048 + AluSc SINE Alu 131 297 -12 1067 154 36 72 chr12 34697753 34697812 -109088643 + MER20 DNA MER1_type 7 67 -152 2126 115 0 0 chr12 34697812 34698142 -109088313 - AluSx SINE Alu 0 330 1 1067 154 36 72 chr12 34698142 34698302 -109088153 + MER20 DNA MER1_type 67 219 0 355 276 80 25 chr12 34698493 34698656 -109087799 + MIR SINE MIR 86 257 -5 298 247 14 0 chr12 34698656 34698729 -109087726 + L1ME4a LINE L1 5954 6027 -94 2263 109 0 7 chr12 34699160 34699462 -109086993 - AluSx SINE Alu -12 300 1 693 280 43 27 chr12 34699527 34699714 -109086741 + MIR SINE MIR 1 195 -67 270 0 0 0 chr12 34699714 34699744 -109086711 + (TG)n Simple_repeat Simple_repeat 2 31 0 693 280 43 27 chr12 34699744 34699813 -109086642 + MIR SINE MIR 195 261 -1 2113 97 31 3 chr12 34700394 34700684 -109085771 + AluSq SINE Alu 1 298 -15 1026 90 0 8 chr12 34701147 34701281 -109085174 - FLAM_C SINE Alu 0 133 1 938 93 0 47 chr12 34701469 34701598 -109084857 - FLAM_C SINE Alu -10 123 1 257 181 0 111 chr12 34702401 34702445 -109084010 - MIR3 SINE MIR -12 196 161 743 166 251 0 chr12 34702445 34702620 -109083835 + MER20 DNA MER1_type 1 219 0 257 181 0 111 chr12 34702620 34702647 -109083808 - MIR3 SINE MIR -47 161 133 443 277 161 28 chr12 34702835 34703084 -109083371 + MLT1I LTR MaLR 66 347 -62 23 33 0 0 chr12 34703321 34703351 -109083104 + AT_rich Low_complexity Low_complexity 1 30 0 2082 135 0 0 chr12 34703354 34703642 -109082813 + AluSx SINE Alu 1 288 -24 450 0 0 0 chr12 34703643 34703693 -109082762 + (CA)n Simple_repeat Simple_repeat 2 51 0 414 261 99 0 chr12 34704427 34704538 -109081917 - L2 LINE L2 -1 3312 3191 2074 92 13 16 chr12 34704748 34705052 -109081403 - AluSx SINE Alu -9 303 1 1064 168 0 0 chr12 34706058 34706225 -109080230 + FRAM SINE Alu 1 166 -10 4422 253 83 25 chr12 34706799 34707322 -109079133 - L2 LINE L2 -497 2817 2326 2167 124 0 3 chr12 34707322 34707628 -109078827 + AluSx SINE Alu 1 305 -7 4422 253 83 25 chr12 34707628 34708540 -109077915 - L2 LINE L2 -988 2326 1299 814 219 0 0 chr12 34708608 34708754 -109077701 + FRAM SINE Alu 1 146 -30 501 62 0 0 chr12 34708754 34708819 -109077636 + (TAAA)n Simple_repeat Simple_repeat 2 66 0 1063 239 70 78 chr12 34708835 34709208 -109077247 - L2 LINE L2 -2606 708 339 1459 167 130 0 chr12 34709555 34709801 -109076654 + AluSx SINE Alu 1 278 -34 378 0 0 0 chr12 34709914 34709956 -109076499 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 9531 32 4 0 chr12 34709956 34711792 -109074663 - L1PA3 LINE L1 -13 6142 4301 2352 83 3 0 chr12 34711805 34712095 -109074360 + AluSp SINE Alu 2 292 -21 2257 226 125 22 chr12 34712096 34712783 -109073672 - L1 LINE L1 -1722 4424 3667 2127 134 16 0 chr12 34712800 34713106 -109073349 - AluSx SINE Alu -1 311 1 1851 144 35 3 chr12 34713106 34713286 -109073169 - AluJb SINE Alu -2 310 116 246 32 0 0 chr12 34713286 34713317 -109073138 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1851 144 35 3 chr12 34713317 34713420 -109073035 - AluJb SINE Alu -196 116 18 1471 212 67 67 chr12 34714634 34715130 -109071325 + MLT1D LTR MaLR 8 503 -2 600 192 0 25 chr12 34715130 34715247 -109071208 + MER106B DNA MER1_type 25 138 -921 1156 128 48 0 chr12 34715247 34715435 -109071020 - Tigger1 DNA MER2_type 0 2418 2222 2113 123 3 23 chr12 34715440 34715740 -109070715 + AluSp SINE Alu 1 294 -19 342 290 122 0 chr12 34716097 34716228 -109070227 - MER5A DNA MER1_type -30 159 13 2300 107 7 7 chr12 34716591 34716901 -109069554 - AluSq SINE Alu -3 310 1 693 67 34 0 chr12 34717187 34717276 -109069179 - AluSq/x SINE Alu -189 123 32 360 178 55 0 chr12 34717276 34717349 -109069106 - L1 LINE L1 -2471 3675 3599 633 205 0 0 chr12 34717657 34717774 -109068681 + FLAM_C SINE Alu 2 118 -25 2452 87 3 0 chr12 34717792 34718101 -109068354 + AluSx SINE Alu 1 310 -2 2303 106 0 0 chr12 34718476 34718778 -109067677 + AluSx SINE Alu 1 302 -10 2365 90 0 0 chr12 34719149 34719463 -109066992 + AluSx SINE Alu 1 314 0 243 158 26 13 chr12 34719613 34719689 -109066766 + (TA)n Simple_repeat Simple_repeat 1 77 0 1784 148 105 0 chr12 34719760 34720065 -109066390 - MER1B DNA MER1_type 0 337 1 247 311 169 11 chr12 34720823 34721000 -109065455 - MIR SINE MIR -57 205 1 3017 158 55 43 chr12 34721177 34721481 -109064974 - Tigger6 DNA MER2_type 0 1597 1298 2224 70 9 86 chr12 34721481 34721808 -109064647 + AluSg SINE Alu 1 302 -8 3017 158 55 43 chr12 34721808 34721999 -109064456 - Tigger6 DNA MER2_type -299 1298 1090 2306 92 0 31 chr12 34721999 34722316 -109064139 - AluSg SINE Alu -3 307 1 3017 158 55 43 chr12 34722316 34722453 -109064002 - Tigger6 DNA MER2_type -507 1090 956 458 205 98 9 chr12 34722464 34722576 -109063879 - FLAM_A SINE Alu -10 123 2 248 291 19 39 chr12 34722690 34722793 -109063662 - L3 LINE CR1 -103 1474 1374 803 200 6 34 chr12 34722797 34722972 -109063483 + FRAM SINE Alu 1 167 -9 264 197 0 16 chr12 34723631 34723692 -109062763 + LTR48B LTR ERV1 13 72 -572 2023 138 3 0 chr12 34723888 34724184 -109062271 + AluSx SINE Alu 3 299 -13 408 284 46 0 chr12 34724195 34724337 -109062118 - MIR SINE MIR -63 145 20 1954 178 12 35 chr12 34724354 34724753 -109061702 + MLT1B LTR MaLR 1 390 0 1035 89 0 15 chr12 34724974 34725109 -109061346 + AluSq/x SINE Alu 1 133 -179 1802 108 4 4 chr12 34725212 34725462 -109060993 - AluSq SINE Alu -63 250 1 1554 145 0 125 chr12 34725654 34725804 -109060651 + AluJb SINE Alu 1 85 -217 2066 81 0 0 chr12 34725804 34726052 -109060403 - AluSg SINE Alu -62 248 1 1554 145 0 125 chr12 34726052 34726246 -109060209 + AluJb SINE Alu 85 302 0 598 135 42 0 chr12 34726529 34726625 -109059830 + HY3 scRNA scRNA 1 100 -1 189 0 0 0 chr12 34726625 34726646 -109059809 + (A)n Simple_repeat Simple_repeat 1 21 0 600 262 0 0 chr12 34726647 34726788 -109059667 + FLAM_C SINE Alu 3 143 0 511 216 48 37 chr12 34726858 34727207 -109059248 + L1ME4a LINE L1 5709 6120 -1 2586 71 0 0 chr12 34727958 34728269 -109058186 - AluY SINE Alu 0 311 1 2063 115 28 3 chr12 34728271 34728558 -109057897 - AluSx SINE Alu -18 294 1 2347 94 0 19 chr12 34728861 34729169 -109057286 - AluSq SINE Alu -9 304 3 826 156 0 15 chr12 34729183 34729318 -109057137 - FLAM_C SINE Alu 0 133 1 1402 164 0 38 chr12 34729486 34729724 -109056731 - AluJo SINE Alu -83 229 1 239 224 143 31 chr12 34730158 34730242 -109056213 - MER106A DNA MER1_type -3 233 139 948 170 11 48 chr12 34730242 34730430 -109056025 + Tigger1 DNA MER2_type 1 181 -2237 2367 86 0 19 chr12 34730430 34730744 -109055711 - AluY SINE Alu -3 308 1 8499 115 30 34 chr12 34730745 34731691 -109054764 + Tigger1 DNA MER2_type 727 1667 -751 553 165 78 17 chr12 34731691 34731806 -109054649 + FLAM_C SINE Alu 1 122 -11 8499 115 30 34 chr12 34731806 34732227 -109054228 + Tigger1 DNA MER2_type 1667 2088 -330 2467 70 7 3 chr12 34732227 34732525 -109053930 + AluSq SINE Alu 1 299 -14 1461 194 20 0 chr12 34733136 34733259 -109053196 + AluJo SINE Alu 1 120 -192 231 36 0 0 chr12 34733259 34733287 -109053168 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1461 194 20 0 chr12 34733287 34733457 -109052998 + AluJo SINE Alu 120 300 -12 2015 123 3 0 chr12 34733523 34733808 -109052647 + AluJo SINE Alu 1 286 -26 225 0 0 0 chr12 34734417 34734442 -109052013 + (CGG)n Simple_repeat Simple_repeat 2 26 0 2265 97 0 3 chr12 34736286 34736576 -109049879 - AluSx SINE Alu -23 289 1 1252 107 11 0 chr12 34736739 34736917 -109049538 - AluSq SINE Alu -8 305 126 1901 38 0 0 chr12 34736919 34737131 -109049324 - AluY SINE Alu -13 298 87 243 0 0 0 chr12 34737133 34737160 -109049295 + (T)n Simple_repeat Simple_repeat 1 27 0 722 138 9 2 chr12 34737180 34737422 -109049033 + AluJ SINE Alu 6 291 -21 210 143 0 0 chr12 34737422 34737457 -109048998 + (GGGAGA)n Simple_repeat Simple_repeat 1 35 0 839 175 0 45 chr12 34737463 34737617 -109048838 - FAM SINE Alu -27 158 12 195 146 42 0 chr12 34737910 34737958 -109048497 - L3 LINE CR1 -191 1386 1337 246 273 117 16 chr12 34738336 34738464 -109047991 + MIR SINE MIR 13 153 -109 579 227 0 0 chr12 34738474 34738584 -109047871 + FAM SINE Alu 13 122 -63 1644 152 3 20 chr12 34738712 34739009 -109047446 + AluSx SINE Alu 5 296 -16 906 234 47 16 chr12 34739018 34739389 -109047066 - LTR29 LTR ERV1 -79 565 137 1321 174 32 108 chr12 34739516 34739624 -109046831 + AluJb SINE Alu 1 116 -196 1812 109 101 4 chr12 34739624 34739900 -109046555 - AluSc SINE Alu -6 303 1 1321 174 32 108 chr12 34739900 34740107 -109046348 + AluJb SINE Alu 116 292 -20 1190 58 19 0 chr12 34740152 34740308 -109046147 + L1PA7 LINE L1 5994 6152 -2 991 156 19 0 chr12 34740699 34740853 -109045602 + MER4D LTR ERV1 747 903 0 813 121 60 27 chr12 34740853 34740992 -109045463 - LTR48B LTR ERV1 -436 208 62 2299 110 3 0 chr12 34740992 34741291 -109045164 - AluSx SINE Alu -12 300 1 11487 156 169 33 chr12 34741302 34741323 -109045132 - L1 LINE L1 -2931 4634 4617 2863 107 49 5 chr12 34741323 34741772 -109044683 - L1MA2 LINE L1 -5 6299 5831 11487 156 169 33 chr12 34741772 34742434 -109044021 - L1 LINE L1 -2948 4617 4046 2268 93 7 0 chr12 34742434 34742736 -109043719 - AluY SINE Alu -7 304 1 11487 156 169 33 chr12 34742736 34743047 -109043408 - L1 LINE L1 -3519 4046 3779 1633 171 4 19 chr12 34743047 34743316 -109043139 - AluJo SINE Alu -47 265 1 11487 156 169 33 chr12 34743316 34743901 -109042554 - L1 LINE L1 -3786 3779 3275 2367 107 3 0 chr12 34743901 34744210 -109042245 - AluSg SINE Alu 0 310 1 11487 156 169 33 chr12 34744210 34744474 -109041981 - L1 LINE L1 -4290 3275 3048 1556 150 0 0 chr12 34744474 34744701 -109041754 - AluSg/x SINE Alu -12 300 74 11487 156 169 33 chr12 34744701 34744968 -109041487 - L1 LINE L1 -4517 3048 2819 2661 50 0 0 chr12 34744968 34745270 -109041185 - AluY SINE Alu -9 302 1 11487 156 169 33 chr12 34745270 34746432 -109040023 - L1 LINE L1 -4746 2819 885 666 191 85 0 chr12 34746415 34746556 -109039899 - L1 LINE L1 -7193 372 220 * 3203 190 17 34 chr12 34746534 34747181 -109039274 - L1M1 LINE L1 -6910 655 20 422 155 14 0 chr12 34747181 34747252 -109039203 - LTR48B LTR ERV1 -572 72 1 853 183 6 34 chr12 34747900 34748075 -109038380 - FRAM SINE Alu -9 167 1 270 242 61 30 chr12 34748079 34748178 -109038277 + L3 LINE CR1 1374 1475 -102 366 67 0 0 chr12 34748873 34748918 -109037537 + Alu SINE Alu 1 45 -257 597 284 94 0 chr12 34749177 34749385 -109037070 - MIR SINE MIR -13 249 18 365 183 24 37 chr12 34749537 34749661 -109036794 - MER41A LTR ERV1 -12 516 387 2004 84 4 8 chr12 34749661 34749922 -109036533 + AluY SINE Alu 1 260 -51 2113 119 0 22 chr12 34750204 34750515 -109035940 + AluSx SINE Alu 1 304 -8 2023 138 0 3 chr12 34750516 34750812 -109035643 + AluSx SINE Alu 1 295 -17 704 168 0 73 chr12 34750983 34751096 -109035359 + FLAM_A SINE Alu 1 104 -198 2258 89 3 13 chr12 34751096 34751398 -109035057 - AluSc SINE Alu -10 299 1 704 168 0 73 chr12 34751398 34751421 -109035034 + FLAM_A SINE Alu 104 127 -175 192 77 0 0 chr12 34751421 34751447 -109035008 + (TA)n Simple_repeat Simple_repeat 2 27 0 1561 191 42 3 chr12 34751530 34751818 -109034637 - AluJo SINE Alu -13 299 1 794 233 34 48 chr12 34752069 34752361 -109034094 + pTR5 LTR ERV1 741 1028 -1410 3004 130 242 0 chr12 34752444 34752998 -109033457 + LTR12 LTR ERV1 1 688 0 1259 146 194 8 chr12 34753032 34753285 -109033170 - AluSx SINE Alu -12 300 1 2075 91 17 3 chr12 34753385 34753672 -109032783 - AluY SINE Alu -19 292 2 217 311 54 0 chr12 34753673 34753747 -109032708 - L2 LINE L2 -8 3305 3228 189 0 0 0 chr12 34753858 34753879 -109032576 + (A)n Simple_repeat Simple_repeat 1 21 0 2373 88 7 0 chr12 34753890 34754198 -109032257 + AluSp SINE Alu 1 310 -3 2433 67 14 0 chr12 34754573 34754870 -109031585 + AluSp SINE Alu 1 301 -12 2556 68 0 0 chr12 34754899 34755209 -109031246 + AluY SINE Alu 1 310 -1 26 30 0 0 chr12 34755390 34755423 -109031032 + AT_rich Low_complexity Low_complexity 1 33 0 273 274 131 40 chr12 34755541 34755716 -109030739 + MIR SINE MIR 33 223 -39 454 290 36 79 chr12 34755900 34756203 -109030252 + L1MEd LINE L1 31 320 -5799 2214 101 0 0 chr12 34756237 34756524 -109029931 + AluSc SINE Alu 1 287 -22 213 121 0 0 chr12 34756649 34756682 -109029773 + (A)n Simple_repeat Simple_repeat 1 33 0 2266 117 3 0 chr12 34756991 34757298 -109029157 - AluSx SINE Alu 0 312 5 2062 110 7 27 chr12 34757342 34757643 -109028812 - AluY SINE Alu -16 295 1 2748 101 53 22 chr12 34758696 34759111 -109027344 - MSTC LTR MaLR 0 428 1 2402 66 24 0 chr12 34759334 34759623 -109026832 + AluY SINE Alu 1 296 -15 659 316 173 47 chr12 34759834 34760704 -109025751 + L3 LINE CR1 195 1193 -384 2009 158 10 0 chr12 34760704 34761007 -109025448 + AluSx SINE Alu 1 306 -6 659 316 173 47 chr12 34761007 34761074 -109025381 + L3 LINE CR1 1193 1250 -327 2456 86 0 0 chr12 34761508 34761809 -109024646 + AluSq SINE Alu 1 301 -12 317 280 23 0 chr12 34762098 34762210 -109024245 + MIR SINE MIR 5 121 -87 472 221 71 0 chr12 34762367 34762480 -109023975 + FLAM_A SINE Alu 12 132 -10 546 219 50 8 chr12 34762702 34762821 -109023634 + FLAM_A SINE Alu 1 124 -9 195 314 29 14 chr12 34763008 34763078 -109023377 + L2 LINE L2 2999 3069 -203 204 246 33 0 chr12 34763080 34763141 -109023314 + (TTTAG)n Simple_repeat Simple_repeat 4 66 0 283 287 195 5 chr12 34763219 34763414 -109023041 + MIR SINE MIR 23 254 -8 351 65 0 0 chr12 34763420 34763466 -109022989 + (CACCAT)n Simple_repeat Simple_repeat 6 51 0 275 357 0 10 chr12 34763509 34763607 -109022848 + L2 LINE L2 3169 3265 -7 1577 171 47 0 chr12 34764089 34764363 -109022092 + AluJo SINE Alu 1 287 -25 2272 113 0 6 chr12 34764374 34764685 -109021770 + AluSq SINE Alu 1 309 -4 2161 82 3 82 chr12 34765758 34766086 -109020369 + AluSq SINE Alu 1 302 -11 552 147 0 0 chr12 34767554 34767656 -109018799 + L1MA5A LINE L1 6194 6295 -2 694 149 57 28 chr12 34767659 34767800 -109018655 + FRAM SINE Alu 26 170 -6 2196 118 0 7 chr12 34767832 34768137 -109018318 + AluSx SINE Alu 1 303 -9 809 214 7 0 chr12 34768188 34768333 -109018122 + FRAM SINE Alu 1 146 -30 225 94 0 0 chr12 34768333 34768365 -109018090 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 1686 153 25 68 chr12 34769029 34769355 -109017100 + AluJo SINE Alu 1 312 0 2159 97 45 0 chr12 34769506 34769796 -109016659 + AluSc SINE Alu 1 303 -6 199 309 0 0 chr12 34769939 34769994 -109016461 + L2 LINE L2 3206 3260 -12 393 358 8 0 chr12 34770005 34770139 -109016316 + MIR SINE MIR 21 155 -107 428 193 12 0 chr12 34770295 34770378 -109016077 - FLAM_A SINE Alu -13 129 46 210 291 118 9 chr12 34770851 34770961 -109015494 - MIR SINE MIR -4 258 137 2237 126 0 0 chr12 34770999 34771308 -109015147 - AluSx SINE Alu -3 309 1 301 309 71 0 chr12 34771313 34771397 -109015058 - MIR SINE MIR -63 145 56 2078 106 14 17 chr12 34771619 34771911 -109014544 + AluSx SINE Alu 2 292 -20 1401 168 16 12 chr12 34772017 34772261 -109014194 + AluJb SINE Alu 1 245 -67 2065 117 0 0 chr12 34772504 34772795 -109013660 + AluSx SINE Alu 1 291 -21 524 233 160 13 chr12 34772951 34773101 -109013354 + MER5A DNA MER1_type 18 189 0 21 57 0 0 chr12 34776996 34777031 -109009424 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr12 34778745 34778767 -109007688 + AT_rich Low_complexity Low_complexity 1 22 0 1007 37 19 25 chr12 34780504 34780665 -109005790 + (TTC)n Simple_repeat Simple_repeat 2 161 0 2180 93 0 0 chr12 34780668 34780947 -109005508 - AluSg SINE Alu -31 279 1 1678 211 0 3 chr12 34780950 34781248 -109005207 - AluJb SINE Alu -15 297 1 1733 185 3 7 chr12 34781583 34781881 -109004574 - AluJo SINE Alu -13 299 3 2418 90 0 3 chr12 34782118 34782428 -109004027 - AluY SINE Alu -2 309 1 25 31 0 0 chr12 34782433 34782465 -109003990 + AT_rich Low_complexity Low_complexity 1 32 0 2028 102 7 4 chr12 34782478 34782753 -109003702 - AluSq SINE Alu -37 276 1 862 211 6 17 chr12 34782879 34783059 -109003396 - MER45A DNA AcHobo 0 178 1 2251 118 0 16 chr12 34783131 34783446 -109003009 + AluSg SINE Alu 1 310 0 2254 79 0 16 chr12 34784232 34784536 -109001919 + AluY SINE Alu 1 299 -12 301 291 46 53 chr12 34784613 34784728 -109001727 + MIR SINE MIR 53 168 -94 1568 101 50 126 chr12 34784728 34785045 -109001410 + AluSx SINE Alu 1 293 -19 301 291 46 53 chr12 34785045 34785080 -109001375 + MIR SINE MIR 168 202 -60 1203 134 205 13 chr12 34785146 34785385 -109001070 + AluSx SINE Alu 1 285 -27 2142 76 4 0 chr12 34785524 34785800 -109000655 + AluSg SINE Alu 5 281 -29 2298 114 0 10 chr12 34785958 34786266 -109000189 + AluSx SINE Alu 1 305 -7 292 240 0 40 chr12 34786291 34786366 -109000089 - MER5A DNA MER1_type -87 102 31 330 253 61 121 chr12 34786366 34786486 -108999969 + MER5A DNA MER1_type 4 130 -59 2465 77 0 6 chr12 34786486 34786797 -108999658 - AluSg1 SINE Alu 0 309 1 330 253 61 121 chr12 34786797 34786808 -108999647 + MER5A DNA MER1_type 130 140 -49 2475 86 0 0 chr12 34786808 34787110 -108999345 - AluSq SINE Alu -11 302 1 330 253 61 121 chr12 34787110 34787175 -108999280 + MER5A DNA MER1_type 140 189 0 1555 166 4 16 chr12 34787657 34787850 -108998605 - AluSx SINE Alu 0 327 137 2221 103 7 0 chr12 34787850 34788150 -108998305 - AluSp SINE Alu -11 302 1 1555 166 4 16 chr12 34788150 34788244 -108998211 - AluSx SINE Alu -190 137 43 2274 117 7 0 chr12 34788960 34789268 -108997187 - AluSq SINE Alu -3 310 1 689 209 0 36 chr12 34789567 34789706 -108996749 + FLAM_C SINE Alu 3 136 -7 2196 82 7 10 chr12 34789727 34790020 -108996435 + AluY SINE Alu 1 292 -19 1212 158 14 18 chr12 34790121 34790342 -108996113 - MER41B LTR ERV1 -137 498 279 978 136 0 6 chr12 34790380 34790542 -108995913 - L1MA8 LINE L1 -316 5975 5815 29765 93 14 9 chr12 34790547 34796218 -108990237 - L1PA7 LINE L1 -3 6466 740 926 59 47 59 chr12 34796218 34796387 -108990068 - MER41B LTR ERV1 -338 297 131 2296 124 0 0 chr12 34796495 34796802 -108989653 + AluSx SINE Alu 1 307 -5 1065 159 6 0 chr12 34798094 34798257 -108988198 + AluSg/x SINE Alu 135 298 -12 927 209 9 57 chr12 34798413 34798643 -108987812 - AluJo SINE Alu -46 266 48 645 80 0 0 chr12 34798643 34798731 -108987724 + Alu SINE Alu 221 308 -2 1035 93 7 0 chr12 34798731 34798870 -108987585 + AluYb8 SINE Alu 1 140 -178 549 250 7 0 chr12 34798896 34799044 -108987411 + L1MD2 LINE L1 6194 6342 -17 448 217 121 18 chr12 34799080 34799114 -108987341 - MER3 DNA MER1_type -21 188 159 2127 131 7 0 chr12 34799114 34799411 -108987044 + AluSg SINE Alu 1 299 -11 448 217 121 18 chr12 34799411 34799542 -108986913 - MER3 DNA MER1_type -50 159 6 2319 75 3 3 chr12 34799844 34800137 -108986318 - AluSc SINE Alu -16 293 1 432 132 0 66 chr12 34800137 34800228 -108986227 - Tigger1 DNA MER2_type -264 2154 2070 905 174 10 36 chr12 34800229 34800424 -108986031 + Tigger2 DNA MER2_type 2529 2718 0 250 311 97 10 chr12 34800571 34800674 -108985781 - MIR SINE MIR -65 143 32 446 333 114 13 chr12 34800695 34800932 -108985523 + MIR SINE MIR 2 262 0 1849 146 0 0 chr12 34801071 34801376 -108985079 + AluSx SINE Alu 1 305 0 2005 133 0 3 chr12 34801929 34802222 -108984233 - AluSx SINE Alu -20 292 1 2249 97 0 22 chr12 34802223 34802534 -108983921 - AluSx SINE Alu -8 304 1 460 110 0 0 chr12 34803375 34803448 -108983007 - Alu SINE Alu -5 307 235 197 241 74 0 chr12 34805265 34805319 -108981136 + MIR3 SINE MIR 113 170 -38 2011 116 0 0 chr12 34805691 34805958 -108980497 + AluSx SINE Alu 1 267 -45 186 143 0 0 chr12 34807036 34807071 -108979384 + (CA)n Simple_repeat Simple_repeat 2 36 0 1654 130 20 16 chr12 34807108 34807355 -108979100 + AluSx SINE Alu 1 248 -64 2200 104 0 0 chr12 34807544 34807843 -108978612 + AluSg SINE Alu 1 299 -11 334 330 84 14 chr12 34808638 34808825 -108977630 + MIR SINE MIR 16 207 -55 263 230 16 8 chr12 34808973 34809041 -108977414 - Charlie7 DNA MER1_type -72 2540 2469 1703 148 40 10 chr12 34809041 34809339 -108977116 - AluJo SINE Alu -5 307 1 263 230 16 8 chr12 34809339 34809396 -108977059 - Charlie7 DNA MER1_type -143 2469 2414 393 266 39 0 chr12 34809397 34809525 -108976930 - Charlie7 DNA MER1_type -1915 697 565 1605 172 13 41 chr12 34809563 34809877 -108976578 + AluJo SINE Alu 1 305 -7 202 238 16 0 chr12 34809898 34809961 -108976494 + T-rich Low_complexity Low_complexity 4 67 0 1129 285 6 128 chr12 34810076 34810420 -108976035 + AluSx SINE Alu 1 302 0 239 211 35 18 chr12 34810675 34810732 -108975723 + MIR SINE MIR 89 146 -62 224 269 77 0 chr12 34810865 34810917 -108975538 + MIR SINE MIR 66 121 -87 22 35 0 0 chr12 34811106 34811135 -108975320 + AT_rich Low_complexity Low_complexity 1 29 0 1763 154 16 41 chr12 34811139 34811457 -108974998 + AluJb SINE Alu 3 312 0 31 0 0 0 chr12 34811670 34811701 -108974754 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr12 34814286 34814309 -108972146 + AT_rich Low_complexity Low_complexity 1 23 0 280 255 118 39 chr12 34815742 34815895 -108970560 - L2 LINE L2 0 3313 3149 199 275 19 24 chr12 34815959 34816068 -108970387 + MIR SINE MIR 91 145 -63 2005 149 0 7 chr12 34816077 34816372 -108970083 + AluSx SINE Alu 1 293 -19 434 39 52 0 chr12 34816372 34816449 -108970006 + (TA)n Simple_repeat Simple_repeat 1 81 0 2317 87 3 0 chr12 34816693 34816981 -108969474 - AluSx SINE Alu -23 289 1 307 263 39 101 chr12 34817052 34817128 -108969327 - L1MC4a LINE L1 -1906 5902 5823 2289 110 0 7 chr12 34817128 34817436 -108969019 - AluSx SINE Alu -6 306 1 307 263 39 101 chr12 34817436 34817504 -108968951 - L1MC4a LINE L1 -1985 5823 5768 2367 107 3 0 chr12 34817504 34817814 -108968641 - AluSp SINE Alu -2 311 1 307 263 39 101 chr12 34817814 34817847 -108968608 - L1MC4a LINE L1 -2040 5768 5735 21 36 0 0 chr12 34817847 34817875 -108968580 + AT_rich Low_complexity Low_complexity 1 28 0 223 275 62 0 chr12 34817958 34818038 -108968417 - MIR SINE MIR -26 236 152 2057 123 33 0 chr12 34818307 34818609 -108967846 - AluSx SINE Alu 0 312 1 1523 146 6 122 chr12 34818894 34819261 -108967194 + MLT2B3 LTR ERVL 219 552 -2 429 239 185 0 chr12 34819417 34819547 -108966908 - MLT1H1 LTR MaLR 0 555 402 344 269 47 36 chr12 34819602 34819815 -108966640 - MLT1H LTR MaLR -300 249 20 4433 130 20 124 chr12 34819965 34821508 -108964947 + pTR5 LTR ERV1 743 2606 0 2393 73 0 3 chr12 34821662 34821962 -108964493 + AluY SINE Alu 1 299 -12 2782 180 51 25 chr12 34821967 34822484 -108963971 + L1MB8 LINE L1 5503 6040 -138 1898 138 21 7 chr12 34822484 34822775 -108963680 + AluJb SINE Alu 1 295 -17 2782 180 51 25 chr12 34822775 34822862 -108963593 + L1MB8 LINE L1 6040 6123 -55 339 326 14 48 chr12 34823096 34823243 -108963212 - MLT1-int LTR MaLR -500 871 730 679 239 85 23 chr12 34823382 34823558 -108962897 + MER5A DNA MER1_type 3 189 0 438 319 0 7 chr12 34823800 34823944 -108962511 - MLT1-int LTR MaLR -830 541 399 942 289 128 56 chr12 34824130 34824467 -108961988 - MLT1G1 LTR MaLR 0 595 211 475 237 136 17 chr12 34824467 34824585 -108961870 + FLAM_A SINE Alu 1 132 -1 942 289 128 56 chr12 34824585 34824732 -108961723 - MLT1G1 LTR MaLR -384 211 76 2195 112 7 0 chr12 34824863 34825157 -108961298 + AluSq SINE Alu 1 296 -17 556 115 195 0 chr12 34825241 34825328 -108961127 - U6 snRNA snRNA -3 104 1 1768 163 0 17 chr12 34826128 34826422 -108960033 - AluSx SINE Alu -23 289 1 562 187 0 0 chr12 34827221 34827312 -108959143 - FLAM SINE Alu -13 130 40 1837 146 3 14 chr12 34827521 34827808 -108958647 - AluJb SINE Alu -24 288 5 621 59 0 0 chr12 34828650 34828735 -108957720 - AluSq SINE Alu 0 313 229 1098 96 0 25 chr12 34828736 34828893 -108957562 - AluSq SINE Alu -160 153 1 1533 215 60 57 chr12 34829621 34830058 -108956397 + L1MC4a LINE L1 6441 6878 -930 2442 211 69 34 chr12 34830120 34830143 -108956312 + L1MC4 LINE L1 7240 7261 -781 1599 193 0 35 chr12 34830143 34830284 -108956171 + AluJb SINE Alu 1 145 -167 2238 99 0 0 chr12 34830284 34830609 -108955846 + AluSg SINE Alu 1 325 0 1599 193 0 35 chr12 34830609 34830777 -108955678 + AluJb SINE Alu 145 300 -12 2442 211 69 34 chr12 34830777 34831402 -108955053 + L1MC4 LINE L1 7261 7911 -131 2218 105 3 7 chr12 34831836 34832140 -108954315 - AluSq SINE Alu -10 303 1 402 224 59 0 chr12 34832626 34832711 -108953744 - L2 LINE L2 -5 3267 3178 524 220 115 140 chr12 34833796 34834106 -108952349 + MER39 LTR ERV1 1 491 -216 339 167 0 197 chr12 34834082 34834214 -108952241 - MLT1A1 LTR MaLR -259 106 1 * 1571 164 52 11 chr12 34834343 34834630 -108951825 - AluJb SINE Alu -13 299 1 25 31 0 0 chr12 34835194 34835226 -108951229 + AT_rich Low_complexity Low_complexity 1 32 0 2399 103 0 0 chr12 34835810 34836120 -108950335 + AluSq SINE Alu 1 310 -3 2059 146 7 0 chr12 34836192 34836501 -108949954 + AluJb SINE Alu 1 311 -1 334 190 0 0 chr12 34836508 34836566 -108949889 + L1MB8 LINE L1 6115 6172 -6 1131 121 56 108 chr12 34836748 34836979 -108949476 + AluJo SINE Alu 86 304 -8 1031 184 0 6 chr12 34836998 34837161 -108949294 + FRAM SINE Alu 1 162 -4 459 141 167 0 chr12 34837173 34837251 -108949204 - FLAM_A SINE Alu -32 110 20 1259 115 92 4 chr12 34837331 34837657 -108948798 + L1MA8 LINE L1 5139 5488 -743 2066 115 24 3 chr12 34837658 34837953 -108948502 + AluSx SINE Alu 3 303 -9 14517 162 51 24 chr12 34837964 34838162 -108948293 + L1M1 LINE L1 13 204 -7361 2373 97 0 0 chr12 34838162 34838470 -108947985 + AluY SINE Alu 1 308 -3 14517 162 51 24 chr12 34838470 34840911 -108945544 + L1M1 LINE L1 204 2724 -4841 3458 158 78 36 chr12 34840896 34841604 -108944851 + L1MA8 LINE L1 5505 6249 -42 * 2243 60 14 11 chr12 34841604 34841926 -108944529 + AluY SINE Alu 1 323 0 3458 158 78 36 chr12 34841926 34841971 -108944484 + L1MA8 LINE L1 6249 6291 0 2002 142 3 0 chr12 34842324 34842613 -108943842 + AluSx SINE Alu 1 290 -22 2080 133 30 0 chr12 34843378 34843679 -108942776 - AluSx SINE Alu -2 310 1 324 0 0 0 chr12 34844996 34845032 -108941423 + (CA)n Simple_repeat Simple_repeat 2 37 0 400 321 147 9 chr12 34845038 34845256 -108941199 - MIR SINE MIR 0 262 15 2152 92 36 13 chr12 34845284 34845588 -108940867 + AluSp SINE Alu 1 311 -2 2414 76 0 0 chr12 34846376 34846664 -108939791 + AluSc SINE Alu 1 288 -21 231 36 0 0 chr12 34846668 34846696 -108939759 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 2216 82 41 0 chr12 34846893 34847184 -108939271 + AluSx SINE Alu 1 303 -9 1457 162 34 0 chr12 34847241 34847476 -108938979 + AluSx SINE Alu 1 243 -69 35 0 0 22 chr12 34848012 34848029 -108938426 + AT_rich Low_complexity Low_complexity 1 17 -28 8190 25 1 0 chr12 34848029 34849444 -108937011 + L1PA3 LINE L1 4737 6152 -3 35 0 0 22 chr12 34849444 34849472 -108936983 + AT_rich Low_complexity Low_complexity 17 45 0 281 24 49 0 chr12 34849539 34849580 -108936875 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2026 106 11 7 chr12 34849592 34849898 -108936557 + AluSg1 SINE Alu 1 307 0 772 260 63 27 chr12 34850500 34850751 -108935704 - MIR SINE MIR -3 259 2 912 199 74 98 chr12 34850832 34851158 -108935297 + MLT1A1 LTR MaLR 1 318 -47 3673 121 112 26 chr12 34851170 34851429 -108935026 - Tigger1 DNA MER2_type -1410 1008 773 2202 119 3 0 chr12 34851429 34851731 -108934724 + AluSx SINE Alu 3 305 -7 3673 121 112 26 chr12 34851731 34852239 -108934216 - Tigger1 DNA MER2_type -1645 773 125 328 232 21 32 chr12 34852527 34852622 -108933833 - MIR SINE MIR -1 261 168 2047 130 35 0 chr12 34852899 34853183 -108933272 - AluSx SINE Alu -18 294 1 2264 228 65 41 chr12 34853183 34853794 -108932661 - L1ME1 LINE L1 -56 6110 5485 2354 101 13 0 chr12 34853803 34854111 -108932344 - AluSp SINE Alu -1 312 1 1172 128 48 0 chr12 34854116 34854304 -108932151 + Tigger1 DNA MER2_type 2222 2418 0 606 192 0 25 chr12 34854304 34854421 -108932034 - MER106B DNA MER1_type -921 138 25 1526 213 62 66 chr12 34854421 34854919 -108931536 - MLT1D LTR MaLR -2 503 8 1840 144 35 3 chr12 34856133 34856236 -108930219 + AluJb SINE Alu 18 116 -196 246 32 0 0 chr12 34856236 34856267 -108930188 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1840 144 35 3 chr12 34856267 34856447 -108930008 + AluJb SINE Alu 116 310 -2 2076 124 6 19 chr12 34856447 34856762 -108929693 + AluSx SINE Alu 1 311 -1 815 270 14 5 chr12 34857041 34857256 -108929199 + MIR SINE MIR 45 261 -1 1901 137 3 51 chr12 34857304 34857617 -108928838 - AluJb SINE Alu -14 298 1 2486 81 0 0 chr12 34858833 34859130 -108927325 - AluSc SINE Alu -12 297 1 485 353 6 0 chr12 34859166 34859322 -108927133 + MIR SINE MIR 1 157 -105 950 51 0 0 chr12 34859442 34859560 -108926895 - AluY SINE Alu -4 307 190 568 248 213 5 chr12 34859728 34859930 -108926525 + MIR SINE MIR 5 248 -14 2396 106 3 0 chr12 34859952 34860263 -108926192 + AluSx SINE Alu 1 312 0 774 188 0 0 chr12 34860398 34860531 -108925924 + FLAM_A SINE Alu 1 133 0 1711 197 0 0 chr12 34860560 34860850 -108925605 + AluJb SINE Alu 1 290 -22 511 252 36 22 chr12 34860919 34861058 -108925397 - L2 LINE L2 0 3313 3173 1629 248 119 57 chr12 34861111 34861180 -108925275 - L2 LINE L2 -934 2380 2317 1532 173 76 0 chr12 34861180 34861457 -108924998 + AluJo SINE Alu 1 298 -14 1629 248 119 57 chr12 34861457 34861701 -108924754 - L2 LINE L2 -997 2317 2090 2011 105 10 49 chr12 34861701 34862007 -108924448 + AluSx SINE Alu 1 294 -18 2296 88 7 0 chr12 34862007 34862315 -108924140 + AluSx SINE Alu 1 312 0 1629 248 119 57 chr12 34862315 34862758 -108923697 - L2 LINE L2 -1223 2091 1575 3349 96 96 2 chr12 34862876 34863333 -108923122 - MER61D LTR ERV1 -1 500 1 705 204 121 46 chr12 34864376 34864616 -108921839 + MIR SINE MIR 2 259 -3 1865 149 3 23 chr12 34864903 34865205 -108921250 + AluJb SINE Alu 1 296 -16 979 179 22 6 chr12 34865545 34865724 -108920731 - MLT1D LTR MaLR -19 486 305 498 307 35 61 chr12 34865807 34866182 -108920273 - L1MC4a LINE L1 -1982 5826 5462 474 74 82 12 chr12 34866183 34866440 -108920015 + (TA)n Simple_repeat Simple_repeat 1 275 0 3082 157 93 4 chr12 34866478 34867018 -108919437 - LTR69 LTR ERVL 0 588 1 1914 149 0 34 chr12 34867065 34867386 -108919069 - AluJb SINE Alu -2 310 1 224 310 78 14 chr12 34867841 34867983 -108918472 + L2 LINE L2 3099 3249 -64 342 247 14 0 chr12 34868591 34868664 -108917791 + L2 LINE L2 3232 3305 -8 1633 174 17 113 chr12 34869168 34869582 -108916873 - MLT1A2 LTR MaLR 0 374 1 523 239 222 6 chr12 34869724 34870018 -108916437 + L2 LINE L2 2718 3080 -233 34 24 0 0 chr12 34870137 34870178 -108916277 + AT_rich Low_complexity Low_complexity 1 41 0 533 223 14 126 chr12 34870190 34870254 -108916201 - MIR SINE MIR -16 246 176 1884 167 10 0 chr12 34870254 34870553 -108915902 - AluJo SINE Alu -10 302 1 533 223 14 126 chr12 34870553 34870730 -108915725 - MIR SINE MIR -86 176 33 258 311 85 9 chr12 34870869 34870975 -108915480 + MIR SINE MIR 38 151 -57 2371 96 0 0 chr12 34871136 34871439 -108915016 + AluSc SINE Alu 1 303 -6 937 271 25 21 chr12 34871669 34871994 -108914461 + L1ME LINE L1 5474 5799 -371 * 1143 211 60 116 chr12 34871992 34872612 -108913843 - L1ME3A LINE L1 -297 5873 5345 4332 177 61 42 chr12 34872618 34873554 -108912901 - LTR13 LTR ERVK 0 954 1 966 239 41 60 chr12 34873616 34873934 -108912521 - MLT1I LTR MaLR 0 409 98 2376 100 0 0 chr12 34874128 34874428 -108912027 - AluSp SINE Alu -13 300 1 445 263 211 0 chr12 34874447 34874599 -108911856 + Charlie8 DNA MER1_type 71 254 -2163 360 270 15 96 chr12 34874627 34874809 -108911646 + MER112 DNA MER1_type 1 155 -105 186 103 0 0 chr12 34874809 34874838 -108911617 + (CTATT)n Simple_repeat Simple_repeat 5 33 0 360 270 15 96 chr12 34874838 34874925 -108911530 + MER112 DNA MER1_type 155 248 -12 244 180 60 0 chr12 34875374 34875424 -108911031 - L2 LINE L2 -6 3307 3255 1004 197 183 80 chr12 34876678 34877065 -108909390 + MLT1C LTR MaLR 1 424 -43 1803 156 31 0 chr12 34877065 34877354 -108909101 + AluJb SINE Alu 1 298 -14 1004 197 183 80 chr12 34877354 34877404 -108909051 + MLT1C LTR MaLR 424 467 0 2227 104 7 0 chr12 34877470 34877768 -108908687 + AluSg1 SINE Alu 1 300 -9 21 36 0 0 chr12 34878122 34878150 -108908305 + AT_rich Low_complexity Low_complexity 1 28 0 791 298 29 4 chr12 34878200 34878445 -108908010 + MIR SINE MIR 12 262 0 287 336 80 36 chr12 34878439 34878576 -108907879 + L2 LINE L2 3121 3263 -9 * 2213 113 0 3 chr12 34878699 34878992 -108907463 - AluSx SINE Alu -20 292 1 720 327 37 11 chr12 34879174 34879529 -108906926 - L1MEc LINE L1 -5992 404 41 1753 158 16 50 chr12 34879630 34879953 -108906502 + AluJo SINE Alu 1 312 0 2116 100 0 4 chr12 34880807 34881077 -108905378 + AluSx SINE Alu 30 298 -14 398 244 41 111 chr12 34881494 34881666 -108904789 + L2 LINE L2 3150 3309 -4 463 237 57 48 chr12 34881668 34881896 -108904559 - L1ME3A LINE L1 -879 5267 5038 1605 162 39 18 chr12 34882017 34882301 -108904154 - AluJo SINE Alu -22 290 1 21 57 0 0 chr12 34882306 34882341 -108904114 + AT_rich Low_complexity Low_complexity 1 35 0 2077 106 0 0 chr12 34882717 34882982 -108903473 + AluSx SINE Alu 1 265 -47 652 162 196 0 chr12 34883167 34883315 -108903140 - MER5A DNA MER1_type -6 183 7 1896 138 24 0 chr12 34884051 34884340 -108902115 + AluSg SINE Alu 1 296 -14 1131 231 40 35 chr12 34885631 34885996 -108900459 + LTR24B LTR ERV1 145 467 0 227 355 65 0 chr12 34886089 34886213 -108900242 + MIR3 SINE MIR 2 133 -75 3523 79 7 0 chr12 34886385 34886827 -108899628 - PABL_A LTR ERV1 0 660 216 750 110 0 20 chr12 34886829 34886929 -108899526 + AluSg/x SINE Alu 85 182 -130 2884 106 7 2 chr12 34887909 34888313 -108898142 - MER61B LTR ERV1 0 425 20 27 29 0 0 chr12 34888813 34888847 -108897608 + AT_rich Low_complexity Low_complexity 1 34 0 776 265 19 67 chr12 34888953 34889221 -108897234 + MIR SINE MIR 3 257 -5 3946 57 21 30 chr12 34889728 34890258 -108896197 + LTR17 LTR ERV1 256 780 0 250 65 0 0 chr12 34890258 34890289 -108896166 + HERV17 LTR ERV1 1 31 -8595 * 2177 68 0 0 chr12 34890288 34890554 -108895901 + HERV17 LTR ERV1 8361 8626 0 2562 34 40 25 chr12 34890554 34890875 -108895580 + LTR17 LTR ERV1 1 326 -454 361 102 17 0 chr12 34891009 34891068 -108895387 - L1PA16 LINE L1 -9 6157 6098 227 94 0 0 chr12 34891069 34891101 -108895354 - L1PA16 LINE L1 -105 6061 6030 2220 117 0 0 chr12 34891315 34891613 -108894842 + AluSx SINE Alu 1 298 -14 2320 59 0 10 chr12 34892777 34893100 -108893355 + AluY SINE Alu 3 322 0 1431 171 10 48 chr12 34893309 34893601 -108892854 + L1MB8 LINE L1 5887 6167 -11 2104 104 7 0 chr12 34894022 34894322 -108892133 + AluSp SINE Alu 2 303 0 2096 221 29 54 chr12 34894374 34894930 -108891525 - MER34 LTR ERV1 0 542 1 651 233 7 0 chr12 34895127 34895273 -108891182 - MER103 DNA DNA -7 159 13 462 284 88 109 chr12 34896078 34896412 -108890043 - L2 LINE L2 -45 3268 2918 1613 132 0 0 chr12 34896412 34896639 -108889816 - AluJb SINE Alu 0 312 86 462 284 88 109 chr12 34896639 34896764 -108889691 - L2 LINE L2 -395 2918 2792 554 272 166 30 chr12 34896766 34897097 -108889358 - L2 LINE L2 -1068 2246 1871 203 290 16 16 chr12 34897501 34897563 -108888892 - MIR SINE MIR -183 79 18 323 22 0 22 chr12 34897563 34897608 -108888847 + (CACTC)n Simple_repeat Simple_repeat 5 48 0 368 287 276 8 chr12 34897630 34898017 -108888438 - L2 LINE L2 -2106 1208 718 250 348 65 19 chr12 34898744 34898899 -108887556 + L2 LINE L2 2596 2757 -557 277 368 0 17 chr12 34899301 34899418 -108887037 + L2 LINE L2 2948 3062 -210 359 213 32 21 chr12 34901192 34901286 -108885169 - L2 LINE L2 -214 3099 3005 1324 228 46 3 chr12 34901323 34901625 -108884830 + Charlie4a DNA MER1_type 17 331 -177 794 253 130 75 chr12 34901625 34901735 -108884720 - MLT1H LTR MaLR 0 549 447 2412 82 0 3 chr12 34901735 34902040 -108884415 - AluY SINE Alu -7 304 1 794 253 130 75 chr12 34902040 34902402 -108884053 - MLT1H LTR MaLR -102 447 5 1784 136 12 59 chr12 34902427 34902750 -108883705 - AluJb SINE Alu -4 308 1 25 0 0 0 chr12 34902756 34902781 -108883674 + AT_rich Low_complexity Low_complexity 1 25 0 2147 129 7 0 chr12 34902784 34903078 -108883377 + AluSx SINE Alu 1 296 -16 449 259 61 8 chr12 34903086 34903217 -108883238 + Charlie4a DNA MER1_type 371 508 0 332 261 143 56 chr12 34903217 34903378 -108883077 - L2 LINE L2 -333 2980 2806 201 39 0 0 chr12 34903581 34903607 -108882848 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2153 100 4 0 chr12 34903612 34903883 -108882572 - AluSc SINE Alu -37 272 1 1929 191 67 29 chr12 34904684 34905133 -108881322 + MER31B LTR ERV1 1 466 0 1768 157 39 14 chr12 34905455 34905741 -108880714 + AluJb SINE Alu 1 293 -19 1847 163 17 0 chr12 34905763 34906051 -108880404 + AluJb SINE Alu 3 295 -17 637 203 50 33 chr12 34906173 34906240 -108880215 - L1ME3 LINE L1 -166 5996 5932 1552 158 119 112 chr12 34906240 34906703 -108879752 - MLT1C LTR MaLR -1 466 1 637 203 50 33 chr12 34906703 34906843 -108879612 - L1ME3 LINE L1 -230 5932 5786 577 286 74 65 chr12 34907317 34907518 -108878937 - L1ME4a LINE L1 -114 6007 5809 2281 90 0 39 chr12 34907518 34907830 -108878625 - AluSx SINE Alu -12 300 1 577 286 74 65 chr12 34907830 34908103 -108878352 - L1ME4a LINE L1 -312 5809 5529 1283 121 0 0 chr12 34908672 34908846 -108877609 + AluSg/x SINE Alu 132 305 -5 2485 97 0 0 chr12 34909000 34909311 -108877144 + AluSx SINE Alu 1 311 -1 199 345 71 24 chr12 34909617 34909701 -108876754 - L2 LINE L2 -35 3237 3150 183 42 0 0 chr12 34909757 34909781 -108876674 + (ATTG)n Simple_repeat Simple_repeat 3 26 0 2247 117 3 0 chr12 34909853 34910153 -108876302 - AluSx SINE Alu -11 301 1 2397 97 0 3 chr12 34910447 34910757 -108875698 - AluSc SINE Alu 0 309 1 1624 139 58 30 chr12 34911401 34911696 -108874759 - AluSx SINE Alu -9 303 1 255 279 0 0 chr12 34912036 34912097 -108874358 + L2 LINE L2 3251 3311 -2 1944 154 13 16 chr12 34912104 34912409 -108874046 + AluJb SINE Alu 1 304 -8 2209 92 0 33 chr12 34912482 34912787 -108873668 + AluSg SINE Alu 3 297 -13 2524 69 3 0 chr12 34912789 34913093 -108873362 + AluSp SINE Alu 1 305 -8 1074 167 235 0 chr12 34913782 34914003 -108872452 + AluJb SINE Alu 1 273 -39 1004 244 25 0 chr12 34914103 34914304 -108872151 - MER58A DNA MER1_type -3 221 16 2381 64 3 7 chr12 34914307 34914602 -108871853 - AluY SINE Alu -17 294 1 2244 106 0 31 chr12 34914831 34915152 -108871303 - AluY SINE Alu 0 311 1 1057 173 11 11 chr12 34915694 34915873 -108870582 + AluJb SINE Alu 1 179 -133 979 126 0 66 chr12 34915989 34916084 -108870371 + Tigger5 DNA MER2_type 2168 2249 -74 2218 107 0 31 chr12 34916084 34916402 -108870053 - AluSx SINE Alu -4 308 1 979 126 0 66 chr12 34916402 34916473 -108869982 + Tigger5 DNA MER2_type 2249 2323 0 8658 101 19 36 chr12 34916502 34918375 -108868080 - L1PA4 LINE L1 0 6155 4365 2345 83 3 0 chr12 34918375 34918665 -108867790 + AluSp SINE Alu 2 292 -21 8658 101 19 36 chr12 34918665 34919353 -108867102 - L1PA4 LINE L1 -1790 4365 3667 2154 118 6 22 chr12 34919370 34919685 -108866770 - AluY SINE Alu -1 310 1 1858 168 7 7 chr12 34920227 34920531 -108865924 + AluJb SINE Alu 1 304 -8 593 277 29 54 chr12 34920539 34920613 -108865842 - Charlie8 DNA MER1_type -105 236 162 2406 85 0 0 chr12 34920613 34920920 -108865535 - AluY SINE Alu -4 307 1 593 277 29 54 chr12 34920920 34921087 -108865368 - Charlie8 DNA MER1_type -179 162 1 1721 169 6 32 chr12 34921662 34921975 -108864480 - AluJb SINE Alu -7 305 1 452 307 74 5 chr12 34922134 34922349 -108864106 + MLT1J LTR MaLR 6 235 -276 329 254 43 70 chr12 34922409 34922526 -108863929 + MLT1J LTR MaLR 328 440 -71 2427 80 3 3 chr12 34922526 34922828 -108863627 + AluY SINE Alu 1 302 -9 329 254 43 70 chr12 34922828 34922895 -108863560 + MLT1J LTR MaLR 440 507 -4 23 0 0 0 chr12 34923010 34923033 -108863422 + AT_rich Low_complexity Low_complexity 1 23 0 1607 164 31 45 chr12 34923469 34923787 -108862668 + AluJb SINE Alu 1 314 0 2379 84 3 3 chr12 34924964 34925275 -108861180 - AluY SINE Alu 0 311 1 2299 103 7 3 chr12 34925465 34925775 -108860680 + AluSq SINE Alu 1 311 -2 398 290 122 0 chr12 34926141 34926272 -108860183 + MER5A DNA MER1_type 13 159 -30 365 313 60 8 chr12 34927119 34927253 -108859202 + MIR SINE MIR 121 261 -1 26 50 0 0 chr12 34927297 34927337 -108859118 + AT_rich Low_complexity Low_complexity 1 40 0 790 237 40 13 chr12 34928079 34928307 -108858148 - MER46C DNA MER2_type -16 322 89 1199 28 0 0 chr12 34928511 34928655 -108857800 - L1PA5 LINE L1 0 6154 6011 604 62 73 0 chr12 34928876 34928972 -108857483 + L1MA8 LINE L1 6048 6150 -141 567 147 101 0 chr12 34929461 34929590 -108856865 + L1MA8 LINE L1 6148 6289 -2 5631 48 39 17 chr12 34929752 34929947 -108856508 - MER4E LTR ERV1 0 766 577 2424 79 3 10 chr12 34929947 34930251 -108856204 + AluSc SINE Alu 1 302 -7 5631 48 39 17 chr12 34930251 34930805 -108855650 - MER4E LTR ERV1 -189 577 1 516 312 7 0 chr12 34930956 34931094 -108855361 - MER91B DNA MER1_type -51 139 1 503 283 0 26 chr12 34932070 34932222 -108854233 - MIR SINE MIR -45 217 70 1857 150 6 26 chr12 34932425 34932738 -108853717 + AluJb SINE Alu 1 307 -5 3470 175 37 32 chr12 34932738 34933493 -108852962 - L1MB8 LINE L1 -259 5919 5167 1133 126 0 60 chr12 34933493 34933676 -108852779 - FAM SINE Alu -3 172 1 3470 175 37 32 chr12 34933676 34934398 -108852057 - L1MB8 LINE L1 -1011 5167 4450 1997 131 8 64 chr12 34934398 34934585 -108851870 + MER47A DNA MER2_type 1 197 -2126 2377 103 0 0 chr12 34934585 34934885 -108851570 + AluSx SINE Alu 1 300 -12 1997 131 8 64 chr12 34934885 34935013 -108851442 + MER47A DNA MER2_type 197 293 -2030 2216 110 0 31 chr12 34935013 34935332 -108851123 - AluSx SINE Alu -3 309 1 1997 131 8 64 chr12 34935332 34935403 -108851052 + MER47A DNA MER2_type 293 366 0 7542 29 2 13 chr12 34935442 34936724 -108849731 - L1PA4 LINE L1 -6 6149 4871 1818 141 0 0 chr12 34936929 34937191 -108849264 + AluSx SINE Alu 40 301 -11 295 141 31 0 chr12 34937355 34937419 -108849036 + CT-rich Low_complexity Low_complexity 1 66 0 2486 197 66 58 chr12 34938157 34938349 -108848106 - Tigger6a DNA MER2_type -834 763 574 2264 87 0 32 chr12 34938349 34938660 -108847795 - AluSg SINE Alu -9 301 1 2486 197 66 58 chr12 34938660 34938808 -108847647 - Tigger6a DNA MER2_type -1023 574 429 593 170 107 9 chr12 34938808 34938920 -108847535 - FLAM_A SINE Alu -10 123 1 2486 197 66 58 chr12 34938920 34939333 -108847122 - Tigger6a DNA MER2_type -1168 429 3 28 29 0 0 chr12 34939467 34939502 -108846953 + AT_rich Low_complexity Low_complexity 1 35 0 2308 70 6 29 chr12 34939575 34939888 -108846567 + AluY SINE Alu 1 306 -5 1680 190 10 3 chr12 34940385 34940680 -108845775 + AluJb SINE Alu 1 297 -15 2102 113 28 0 chr12 34942888 34943179 -108843276 - AluSx SINE Alu -13 299 1 2355 32 0 0 chr12 34944074 34944352 -108842103 + L1PA5 LINE L1 5860 6137 -17 40 0 0 0 chr12 34944352 34944392 -108842063 + AT_rich Low_complexity Low_complexity 1 40 0 2243 92 3 3 chr12 34944637 34944931 -108841524 + AluSp SINE Alu 3 296 -17 1790 110 116 15 chr12 34945213 34945541 -108840914 - MER46B DNA MER2_type 0 236 1 2555 76 16 16 chr12 34945806 34946173 -108840282 + L1PA12 LINE L1 5800 6166 -2 487 363 71 42 chr12 34946257 34946637 -108839818 - L2 LINE L2 -10 3262 2872 2360 71 0 0 chr12 34948937 34949232 -108837223 - AluY SINE Alu -16 295 1 1912 139 7 16 chr12 34949363 34949666 -108836789 - AluJb SINE Alu -12 300 1 466 100 0 0 chr12 34949837 34949897 -108836558 + Alu SINE Alu 225 284 -25 22 0 0 0 chr12 34949897 34949919 -108836536 + AT_rich Low_complexity Low_complexity 1 22 0 870 158 0 0 chr12 34950612 34950739 -108835716 + FLAM_C SINE Alu 1 127 -16 2197 109 0 10 chr12 34950744 34951048 -108835407 + AluSx SINE Alu 1 301 -11 26 0 0 0 chr12 34951058 34951084 -108835371 + AT_rich Low_complexity Low_complexity 1 26 0 183 129 0 0 chr12 34953359 34953390 -108833065 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 624 227 34 89 chr12 34953593 34953862 -108832593 + MER102b DNA MER1_type 84 337 -4 349 322 120 33 chr12 34954475 34954776 -108831679 - L1ME4a LINE L1 -248 5873 5547 1834 143 42 0 chr12 34954976 34955262 -108831193 + AluJb SINE Alu 1 298 -14 364 225 35 7 chr12 34955887 34956027 -108830428 + L1MC4 LINE L1 1991 6995 -1327 2332 93 10 0 chr12 34956031 34956333 -108830122 - AluY SINE Alu -6 305 1 351 154 0 0 chr12 34957092 34957157 -108829298 + CT-rich Low_complexity Low_complexity 2 66 0 231 289 0 26 chr12 34957397 34957473 -108828982 + CT-rich Low_complexity Low_complexity 4 77 0 299 279 221 0 chr12 34957782 34957886 -108828569 - L2 LINE L2 -8 3264 3138 1715 152 47 4 chr12 34958808 34959084 -108827371 + AluJo SINE Alu 22 309 -3 237 234 0 16 chr12 34959259 34959323 -108827132 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 593 193 6 47 chr12 34959559 34959650 -108826805 - Charlie5 DNA MER1_type 0 2585 2503 2091 143 3 0 chr12 34959650 34959951 -108826504 + AluJb SINE Alu 1 302 -10 593 193 6 47 chr12 34959951 34960030 -108826425 - Charlie5 DNA MER1_type -82 2503 2422 2242 87 10 7 chr12 34960030 34960319 -108826136 + AluSq SINE Alu 11 300 -13 396 0 0 0 chr12 34961385 34961429 -108825026 + (TA)n Simple_repeat Simple_repeat 2 45 0 1960 122 54 3 chr12 34962851 34963145 -108823310 + AluJb SINE Alu 1 309 -3 24 32 0 0 chr12 34963800 34963831 -108822624 + AT_rich Low_complexity Low_complexity 1 31 0 2454 87 0 6 chr12 34963854 34964166 -108822289 + AluSx SINE Alu 1 310 -2 2287 97 0 20 chr12 34964273 34964572 -108821883 + AluSg SINE Alu 1 293 -17 2353 89 0 0 chr12 34964575 34964867 -108821588 + AluSg SINE Alu 1 292 -18 1097 109 0 2 chr12 34964901 34965149 -108821306 + AluSc SINE Alu 1 293 -16 1038 177 6 0 chr12 34965377 34965552 -108820903 + AluJb SINE Alu 136 311 -1 2206 115 0 20 chr12 34968169 34968473 -108817982 + AluSx SINE Alu 1 298 -14 196 318 91 11 chr12 34968666 34968754 -108817701 + L2 LINE L2 2409 2503 -811 348 355 19 13 chr12 34968770 34968925 -108817530 - MIR SINE MIR -54 208 53 1716 134 70 24 chr12 34969019 34969317 -108817138 + AluSx SINE Alu 1 312 0 521 168 0 53 chr12 34969830 34969925 -108816530 - AluJb SINE Alu -158 154 65 2374 85 0 13 chr12 34970219 34970526 -108815929 - AluY SINE Alu -8 303 1 312 300 57 30 chr12 34971736 34971966 -108814489 - L1ME4a LINE L1 -198 5923 5688 28 48 0 0 chr12 34972178 34972220 -108814235 + AT_rich Low_complexity Low_complexity 1 42 0 1892 136 24 21 chr12 34972222 34972509 -108813946 - AluSx SINE Alu -24 288 1 746 168 8 24 chr12 34972520 34972645 -108813810 - FLAM_A SINE Alu -8 125 3 2442 72 0 0 chr12 34973441 34973733 -108812722 + AluSg SINE Alu 1 292 -18 237 345 108 0 chr12 34974440 34974579 -108811876 - MIR SINE MIR -4 258 105 23 0 0 0 chr12 34974579 34974602 -108811853 + AT_rich Low_complexity Low_complexity 1 23 0 682 248 199 11 chr12 34974627 34974998 -108811457 - L1ME4a LINE L1 -844 5302 4862 2209 96 7 7 chr12 34975182 34975474 -108810981 - AluSg SINE Alu -13 297 6 192 40 0 0 chr12 34975915 34975940 -108810515 + (A)n Simple_repeat Simple_repeat 1 25 0 266 257 0 14 chr12 34976029 34976103 -108810352 + L1M4 LINE L1 3433 3505 -2641 202 261 22 0 chr12 34976112 34976158 -108810297 - MER5A DNA MER1_type -142 47 1 253 254 14 0 chr12 34977222 34977293 -108809162 + L1ME4a LINE L1 5981 6052 -69 777 272 79 58 chr12 34978420 34978813 -108807642 - L2 LINE L2 0 3313 2913 1254 164 82 4 chr12 34978853 34978991 -108807464 - AluJo SINE Alu -37 275 110 183 42 0 0 chr12 34978991 34979015 -108807440 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1254 164 82 4 chr12 34979015 34979107 -108807348 - AluJo SINE Alu -202 110 27 2434 66 3 3 chr12 34980197 34980498 -108805957 + AluY SINE Alu 1 301 -10 368 287 91 14 chr12 34982737 34982880 -108803575 - MIR3 SINE MIR -11 197 44 1616 246 69 50 chr12 34982942 34983381 -108803074 + MER119 DNA MER1_type 8 463 -120 2081 96 19 0 chr12 34983381 34983679 -108802776 - AluSg SINE Alu 0 307 5 1616 246 69 50 chr12 34983679 34983803 -108802652 + MER119 DNA MER1_type 463 583 0 1805 152 41 7 chr12 34984517 34984807 -108801648 + AluJb SINE Alu 2 301 -11 454 296 70 0 chr12 34984950 34985122 -108801333 + MIR SINE MIR 77 260 -2 2183 100 0 0 chr12 34985161 34985514 -108800941 - AluSg SINE Alu 0 353 1 321 303 69 87 chr12 34985639 34985870 -108800585 - L2 LINE L2 -1 3271 3045 1064 193 0 21 chr12 34985873 34986060 -108800395 - AluJo SINE Alu -51 261 79 299 294 35 0 chr12 34990786 34990871 -108795584 - MIR3 SINE MIR -54 154 67 543 321 57 48 chr12 34991474 34991711 -108794744 - L2 LINE L2 -3 3310 3068 3767 36 0 0 chr12 34991711 34992131 -108794324 - L1PA3 LINE L1 0 6155 5736 543 321 57 48 chr12 34992131 34992226 -108794229 - L2 LINE L2 -245 3068 2975 345 277 15 46 chr12 34992442 34992572 -108793883 + MIR SINE MIR 23 148 -60 230 299 15 0 chr12 34994335 34994402 -108792053 + L1ME4a LINE L1 5518 5585 -599 467 274 151 27 chr12 34994863 34995155 -108791300 + L1ME4a LINE L1 5588 5915 -206 509 323 63 5 chr12 34995446 34995635 -108790820 + L3 LINE CR1 1369 1568 -9 2182 58 47 14 chr12 34996106 34996384 -108790071 - AluY SINE Alu -24 287 1 326 180 0 0 chr12 34996621 34996671 -108789784 + 5S rRNA rRNA 1 50 -71 2174 122 0 0 chr12 34996947 34997243 -108789212 + AluSx SINE Alu 1 296 -16 386 342 87 63 chr12 34998005 34998593 -108787862 - L2 LINE L2 -338 2976 2375 1202 135 0 0 chr12 34999296 34999466 -108786989 - AluJ SINE Alu -14 298 129 823 168 58 7 chr12 34999661 34999798 -108786657 - AluJ SINE Alu -167 145 2 199 385 37 9 chr12 35000100 35000209 -108786246 + L2 LINE L2 3141 3252 -20 1276 191 65 14 chr12 35000948 35001226 -108785229 - AluJb SINE Alu -20 292 1 1933 150 25 0 chr12 35002393 35002679 -108783776 + AluJb SINE Alu 1 293 -19 1582 114 4 0 chr12 35003052 35003280 -108783175 + AluSp SINE Alu 74 302 -11 1585 213 123 103 chr12 35003479 35003615 -108782840 + Charlie7 DNA MER1_type 1479 1611 -1001 2380 93 0 3 chr12 35003615 35003925 -108782530 + AluSp SINE Alu 1 309 -4 1585 213 123 103 chr12 35003925 35004290 -108782165 + Charlie7 DNA MER1_type 1611 1967 -645 856 139 0 36 chr12 35004290 35004427 -108782028 + FLAM_C SINE Alu 1 132 -1 1585 213 123 103 chr12 35004427 35004438 -108782017 + Charlie7 DNA MER1_type 1967 1976 -636 2121 122 0 29 chr12 35004438 35004750 -108781705 + AluSx SINE Alu 1 303 -9 1585 213 123 103 chr12 35004750 35005034 -108781421 + Charlie7 DNA MER1_type 1976 2293 -319 1349 95 0 0 chr12 35005208 35005387 -108781068 - AluY SINE Alu -2 309 131 22 0 0 0 chr12 35006259 35006281 -108780174 + AT_rich Low_complexity Low_complexity 1 22 0 186 326 11 54 chr12 35007175 35007267 -108779188 + L2 LINE L2 2956 3043 -229 940 173 31 0 chr12 35007533 35007695 -108778760 - L1MB3 LINE L1 0 6183 6017 2368 67 0 13 chr12 35007950 35008248 -108778207 + AluY SINE Alu 1 294 -17 2496 65 0 0 chr12 35008372 35008680 -108777775 + AluY SINE Alu 1 308 -3 1758 170 3 0 chr12 35008813 35009095 -108777360 + AluJo SINE Alu 14 296 -16 650 140 309 6 chr12 35009419 35009597 -108776858 - MER21A LTR ERV1 -699 232 1 308 206 144 0 chr12 35009645 35009742 -108776713 - L1ME3A LINE L1 -239 5931 5821 5352 143 168 26 chr12 35009747 35010871 -108775584 + pTR5 LTR ERV1 742 2025 -413 309 276 10 0 chr12 35010871 35010969 -108775486 + LTR30 LTR ERV1 544 642 -80 1211 136 60 5 chr12 35010972 35011171 -108775284 + LTR12 LTR ERV1 379 588 -126 2232 94 7 7 chr12 35011430 35011727 -108774728 - AluSg SINE Alu -13 297 1 285 283 40 0 chr12 35011727 35011826 -108774629 + L1ME LINE L1 5465 5567 -597 1276 269 162 47 chr12 35011901 35012765 -108773690 - L2 LINE L2 -1 3312 2303 1885 156 3 10 chr12 35013700 35014001 -108772454 + AluSx SINE Alu 1 299 -13 662 226 39 96 chr12 35014087 35014317 -108772138 - MER20 DNA MER1_type -1 218 2 2843 119 28 18 chr12 35014362 35014798 -108771657 - MER83 LTR ERV1 -8 440 1 1708 172 10 113 chr12 35015292 35015699 -108770756 + MLT1A1 LTR MaLR 1 365 0 10390 27 1 161 chr12 35017625 35019272 -108767183 + SVA Other Other 1 1383 -3 2522 82 0 6 chr12 35020300 35020615 -108765840 + AluSq SINE Alu 1 313 0 1387 143 13 26 chr12 35020765 35020996 -108765459 + AluJo SINE Alu 71 298 -14 22 0 0 0 chr12 35021113 35021135 -108765320 + AT_rich Low_complexity Low_complexity 1 22 0 1525 183 17 33 chr12 35021135 35021435 -108765020 + AluJb SINE Alu 1 295 -17 382 193 67 67 chr12 35022221 35022356 -108764099 + MER58C DNA MER1_type 81 215 0 1306 198 37 43 chr12 35023435 35023763 -108762692 - L1MD3 LINE L1 -256 7739 7414 2516 75 3 0 chr12 35024244 35024551 -108761904 - AluSc SINE Alu -1 308 1 1702 213 119 30 chr12 35024599 35025138 -108761317 - L1ME1 LINE L1 -2 6164 5578 1651 126 65 0 chr12 35025325 35025602 -108760853 - MER44D DNA MER2_type 0 609 45 233 227 103 21 chr12 35025667 35025764 -108760691 + MIR SINE MIR 68 172 -90 602 237 41 67 chr12 35026418 35026612 -108759843 + MER5A DNA MER1_type 1 189 0 2338 101 3 0 chr12 35026719 35027027 -108759428 - AluSx SINE Alu -3 309 1 2328 78 51 0 chr12 35030214 35030510 -108755945 - AluY SINE Alu 0 311 1 959 302 89 37 chr12 35030532 35031188 -108755267 + L2 LINE L2 2435 3145 -127 1883 170 6 6 chr12 35031188 35031500 -108754955 - AluSx SINE Alu 0 312 1 959 302 89 37 chr12 35031500 35031636 -108754819 + L2 LINE L2 3145 3272 0 21 0 0 0 chr12 35031695 35031716 -108754739 + AT_rich Low_complexity Low_complexity 1 21 0 2099 130 0 13 chr12 35032074 35032389 -108754066 + AluY SINE Alu 1 311 0 2271 96 3 20 chr12 35032590 35032891 -108753564 + AluSp SINE Alu 1 296 -17 22 0 0 0 chr12 35033281 35033303 -108753152 + AT_rich Low_complexity Low_complexity 1 22 0 2234 103 3 0 chr12 35033856 35034147 -108752308 - AluSp SINE Alu -1 312 21 2187 87 7 0 chr12 35034680 35034966 -108751489 - AluSg SINE Alu -22 288 1 2330 250 85 48 chr12 35036205 35036892 -108749563 - MER21B LTR ERV1 -66 865 40 2408 75 0 3 chr12 35036937 35037229 -108749226 - AluY SINE Alu -20 291 1 1969 128 7 14 chr12 35037446 35037743 -108748712 + AluSx SINE Alu 1 295 -17 1885 146 7 7 chr12 35037751 35038046 -108748409 + AluJb SINE Alu 1 295 -17 821 202 22 34 chr12 35038178 35038356 -108748099 - MER5B DNA MER1_type -2 176 1 189 276 35 0 chr12 35038628 35038686 -108747769 - MIR SINE MIR -150 112 53 1019 204 85 0 chr12 35038735 35038936 -108747519 - MER58A DNA MER1_type -6 218 1 721 147 15 44 chr12 35039526 35039662 -108746793 - FLAM_A SINE Alu 0 133 2 1629 173 0 8 chr12 35040457 35040717 -108745738 + AluJo SINE Alu 1 258 -54 340 236 7 76 chr12 35040787 35040931 -108745524 + MIR SINE MIR 129 262 0 2181 108 7 0 chr12 35041020 35041307 -108745148 - AluSq SINE Alu -24 289 1 347 232 36 54 chr12 35042373 35042485 -108743970 + MER103 DNA DNA 8 117 -49 210 372 58 0 chr12 35043395 35043481 -108742974 + L2 LINE L2 3143 3233 -39 1955 143 7 10 chr12 35043697 35043997 -108742458 + AluJb SINE Alu 9 307 -5 427 278 52 63 chr12 35044659 35044850 -108741605 - MIR SINE MIR -27 235 47 2152 100 0 67 chr12 35045553 35045883 -108740572 - AluSx SINE Alu -4 308 1 2368 65 7 52 chr12 35046086 35046395 -108740060 - AluSp SINE Alu -18 295 1 1377 183 95 4 chr12 35047125 35047387 -108739068 + AluJb SINE Alu 2 287 -25 1769 273 89 27 chr12 35047763 35048790 -108737665 - L2 LINE L2 0 3313 2210 2556 57 3 0 chr12 35048871 35049171 -108737284 - AluY SINE Alu -10 301 1 1350 199 63 22 chr12 35049171 35049442 -108737013 - AluJo SINE Alu -30 282 1 1426 150 156 13 chr12 35049563 35049877 -108736578 - L1MB3 LINE L1 -3 6180 5822 1221 96 0 6 chr12 35049877 35050033 -108736422 + AluSq SINE Alu 2 156 -157 337 143 0 0 chr12 35050036 35050085 -108736370 - Alu SINE Alu -254 49 1 396 119 0 17 chr12 35050085 35050144 -108736311 - L1MB3 LINE L1 -445 5738 5681 2058 144 0 0 chr12 35050154 35050453 -108736002 - AluSx SINE Alu -12 300 2 27 73 0 0 chr12 35050508 35050563 -108735892 + AT_rich Low_complexity Low_complexity 1 55 0 2294 92 0 7 chr12 35051248 35051540 -108734915 - AluSc SINE Alu -19 290 1 1576 142 114 4 chr12 35051765 35052046 -108734409 - AluJb SINE Alu 0 312 1 288 236 22 56 chr12 35052072 35052161 -108734294 + MER2 DNA MER2_type 2 87 -258 1923 169 0 3 chr12 35052431 35052727 -108733728 - AluJb SINE Alu -17 295 1 1617 72 0 0 chr12 35053633 35053828 -108732627 + AluSc SINE Alu 113 307 -2 2027 132 17 0 chr12 35054282 35054570 -108731885 - AluSx SINE Alu -19 293 1 32 26 0 0 chr12 35054583 35054622 -108731833 + AT_rich Low_complexity Low_complexity 1 39 0 2380 97 0 10 chr12 35054899 35055208 -108731247 - AluSg SINE Alu -4 306 1 1023 125 0 7 chr12 35055495 35055647 -108730808 + AluSg/x SINE Alu 146 296 -13 2107 118 13 0 chr12 35055657 35055961 -108730494 + AluSq SINE Alu 1 308 -5 188 276 35 35 chr12 35056050 35056137 -108730318 - MIR SINE MIR 0 262 176 2027 112 25 0 chr12 35056464 35056783 -108729672 - AluSx SINE Alu 0 326 1 1055 130 25 45 chr12 35057189 35057389 -108729066 + MER20 DNA MER1_type 24 219 0 2438 80 0 0 chr12 35057875 35058174 -108728281 - AluSx SINE Alu -13 299 1 2521 72 3 0 chr12 35058963 35059267 -108727188 + AluSg SINE Alu 1 305 -5 227 300 55 45 chr12 35059799 35059909 -108726546 - MIR SINE MIR -129 133 23 2072 97 41 0 chr12 35059967 35060273 -108726182 - AluSc SINE Alu 0 317 1 369 0 0 0 chr12 35060350 35060391 -108726064 + (TA)n Simple_repeat Simple_repeat 2 42 0 1828 183 0 3 chr12 35060391 35060686 -108725769 - AluJo SINE Alu -18 294 1 2307 87 17 0 chr12 35060736 35061035 -108725420 - AluSx SINE Alu -8 304 1 2020 118 47 0 chr12 35061596 35061892 -108724563 - AluSx SINE Alu 0 312 3 2187 112 0 14 chr12 35061895 35062219 -108724236 - AluSq SINE Alu 0 313 1 384 308 5 76 chr12 35062284 35062469 -108723986 + MIR3 SINE MIR 29 200 -8 270 160 0 0 chr12 35062535 35062585 -108723870 + (TG)n Simple_repeat Simple_repeat 2 51 0 232 214 18 0 chr12 35062585 35062641 -108723814 + (TA)n Simple_repeat Simple_repeat 1 57 0 3057 121 111 44 chr12 35062824 35063067 -108723388 - MER51A LTR ERV1 0 634 409 1550 98 61 138 chr12 35063067 35063394 -108723061 + AluSg SINE Alu 1 302 -8 3057 121 111 44 chr12 35063394 35063744 -108722711 - MER51A LTR ERV1 -225 409 1 304 294 61 28 chr12 35063988 35064168 -108722287 + L1MC4a LINE L1 5180 5365 -781 1725 154 29 29 chr12 35064170 35064482 -108721973 + AluJb SINE Alu 1 312 0 2515 53 0 3 chr12 35064626 35064926 -108721529 - AluY SINE Alu -12 299 1 991 279 56 24 chr12 35064943 35065369 -108721086 + L1MC4a LINE L1 5445 5884 -1924 939 152 87 159 chr12 35065563 35065736 -108720719 + MLT1C LTR MaLR 1 185 -282 2581 58 0 10 chr12 35065736 35066047 -108720408 + AluY SINE Alu 1 308 -3 939 152 87 159 chr12 35066047 35066087 -108720368 + MLT1C LTR MaLR 185 226 -241 2127 112 7 7 chr12 35066087 35066372 -108720083 + AluSq SINE Alu 1 285 -28 438 20 0 0 chr12 35066372 35066423 -108720032 + (CA)n Simple_repeat Simple_repeat 2 52 0 939 152 87 159 chr12 35066423 35066554 -108719901 + MLT1C LTR MaLR 224 341 -126 1237 222 135 49 chr12 35066574 35067064 -108719391 - LTR10B LTR ERV1 -3 544 13 785 152 8 8 chr12 35067084 35067216 -108719239 + MLT1C LTR MaLR 336 467 0 1831 136 11 0 chr12 35067263 35067535 -108718920 - AluSx SINE Alu -37 275 1 1973 115 21 11 chr12 35068124 35068251 -108718204 + AluSx SINE Alu 2 126 -186 2276 90 0 34 chr12 35068251 35068573 -108717882 + AluSp SINE Alu 1 311 -2 1973 115 21 11 chr12 35068573 35068732 -108717723 + AluSx SINE Alu 126 291 -21 22 0 0 0 chr12 35068732 35068754 -108717701 + AT_rich Low_complexity Low_complexity 1 22 0 2089 109 46 0 chr12 35069823 35070108 -108716347 + AluSx SINE Alu 2 299 -13 288 237 316 7 chr12 35070134 35070286 -108716169 + MIR SINE MIR 58 256 -6 2467 78 0 0 chr12 35070410 35070705 -108715750 + AluY SINE Alu 1 295 -16 195 42 0 0 chr12 35070705 35070729 -108715726 + (TA)n Simple_repeat Simple_repeat 2 25 0 1828 207 66 28 chr12 35070971 35071371 -108715084 + MLT1D LTR MaLR 19 441 -64 2378 84 0 0 chr12 35071371 35071667 -108714788 - AluY SINE Alu -15 296 1 1828 207 66 28 chr12 35071667 35071735 -108714720 + MLT1D LTR MaLR 441 505 0 2121 120 0 0 chr12 35071956 35072247 -108714208 - AluSx SINE Alu -19 293 3 2307 104 0 0 chr12 35072365 35072674 -108713781 - AluY SINE Alu -2 309 1 2346 74 10 16 chr12 35072872 35073183 -108713272 - AluSq SINE Alu -4 309 1 2522 79 0 0 chr12 35073184 35073488 -108712967 - AluSp SINE Alu -9 304 1 192 233 23 0 chr12 35073751 35073794 -108712661 - L2 LINE L2 0 3313 3270 280 224 52 0 chr12 35073846 35073904 -108712551 - MER91 DNA MER1_type -78 62 2 1712 173 0 40 chr12 35073998 35074321 -108712134 - AluJb SINE Alu 0 312 3 1094 74 7 0 chr12 35074322 35074457 -108711998 - AluSp SINE Alu -177 136 1 2070 107 0 36 chr12 35074594 35074902 -108711553 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr12 35075084 35075107 -108711348 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 710 123 113 0 chr12 35075109 35075215 -108711240 - FLAM_C SINE Alu -15 118 1 207 0 0 0 chr12 35075227 35075250 -108711205 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2259 60 0 0 chr12 35075444 35075750 -108710705 + AluY SINE Alu 15 320 0 192 40 0 0 chr12 35077345 35077370 -108709085 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 1212 165 9 24 chr12 35078146 35078358 -108708097 + AluJb SINE Alu 47 255 -57 825 114 78 78 chr12 35078679 35078846 -108707609 + FRAM SINE Alu 1 161 -15 421 285 116 35 chr12 35078927 35078969 -108707486 - MER5A DNA MER1_type 0 189 152 2273 95 3 0 chr12 35078969 35079263 -108707192 - AluSp SINE Alu -18 295 1 421 285 116 35 chr12 35079263 35079392 -108707063 - MER5A DNA MER1_type -37 152 4 216 213 16 49 chr12 35079861 35079922 -108706533 - L3 LINE CR1 -19 1558 1500 1703 151 55 17 chr12 35080058 35080349 -108706106 - AluJo SINE Alu -10 302 1 2346 116 0 0 chr12 35080364 35080674 -108705781 - AluSg SINE Alu 0 310 1 902 137 38 0 chr12 35080674 35080805 -108705650 - AluSq/x SINE Alu -176 136 1 757 191 64 49 chr12 35080842 35081046 -108705409 - L1MB7 LINE L1 -1 6183 5977 2006 148 88 96 chr12 35081185 35081306 -108705149 - L1MB7 LINE L1 -202 5982 5862 1988 117 42 11 chr12 35081306 35081589 -108704866 - AluSx SINE Alu -9 303 12 2006 148 88 96 chr12 35081589 35081773 -108704682 - L1MB7 LINE L1 -322 5862 5678 2397 61 10 0 chr12 35081773 35082067 -108704388 - AluY SINE Alu -14 297 1 2006 148 88 96 chr12 35082067 35082190 -108704265 - L1MB7 LINE L1 -506 5678 5555 2035 129 0 7 chr12 35082190 35082493 -108703962 - AluSx SINE Alu -11 301 1 2006 148 88 96 chr12 35082493 35082575 -108703880 - L1MB7 LINE L1 -629 5555 5474 642 159 88 23 chr12 35082840 35082876 -108703579 - L1MB5 LINE L1 -6 6168 6136 2422 83 13 0 chr12 35082876 35083177 -108703278 - AluSp SINE Alu -8 305 1 642 159 88 23 chr12 35083177 35083728 -108702727 - L1MB5 LINE L1 -38 6136 5372 888 121 0 57 chr12 35083770 35083911 -108702544 - FLAM_C SINE Alu 0 133 1 1920 210 80 68 chr12 35083911 35084275 -108702180 - L1MB5 LINE L1 -941 5205 4847 1919 144 0 23 chr12 35084275 35084580 -108701875 - AluSx SINE Alu -14 298 1 1920 210 80 68 chr12 35084580 35084748 -108701707 - L1MB5 LINE L1 -1299 4847 4660 1818 146 4 4 chr12 35084748 35085048 -108701407 - AluSx SINE Alu 0 307 8 1920 210 80 68 chr12 35085048 35085175 -108701280 - L1MB5 LINE L1 -1486 4660 4536 455 98 37 73 chr12 35085261 35085343 -108701112 - MER41B LTR ERV1 -91 544 466 818 144 53 48 chr12 35085357 35085545 -108700910 - L1M4c LINE L1 -4850 1534 1346 961 194 12 6 chr12 35085747 35085917 -108700538 + FAM SINE Alu 1 171 -4 1980 113 33 0 chr12 35086023 35086318 -108700137 - AluSp SINE Alu 0 305 2 269 0 0 0 chr12 35086415 35086450 -108700005 + L1MD3 LINE L1 7950 7984 -11 793 264 98 62 chr12 35087047 35087403 -108699052 + Charlie8 DNA MER1_type 29 397 -2020 516 276 96 15 chr12 35087406 35087605 -108698850 + MIR SINE MIR 48 262 0 2377 140 44 31 chr12 35087820 35088081 -108698374 - MLT1B LTR MaLR 0 390 121 2337 68 0 20 chr12 35088081 35088373 -108698082 - AluSc SINE Alu -23 286 1 2377 140 44 31 chr12 35088373 35088496 -108697959 - MLT1B LTR MaLR -269 121 1 229 210 99 127 chr12 35088727 35088908 -108697547 + HAL1b LINE L1 309 484 -864 27 0 0 0 chr12 35088976 35089003 -108697452 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr12 35089156 35089179 -108697276 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 592 279 209 21 chr12 35089697 35090210 -108696245 - L1ME3 LINE L1 -300 5862 5254 1522 170 20 98 chr12 35090351 35090464 -108695991 - L1MB8 LINE L1 0 6178 6058 1926 157 0 3 chr12 35090464 35090769 -108695686 - AluJb SINE Alu -8 304 1 1522 170 20 98 chr12 35090769 35090919 -108695536 - L1MB8 LINE L1 -120 6058 5956 2212 95 0 7 chr12 35090919 35091214 -108695241 - AluSg SINE Alu -17 293 1 1522 170 20 98 chr12 35091214 35091355 -108695100 - L1MB8 LINE L1 -222 5956 5805 1857 148 0 7 chr12 35092318 35092601 -108693854 + AluJb SINE Alu 1 281 -31 299 291 33 88 chr12 35092661 35093084 -108693371 + HAL1b LINE L1 8 407 -941 1629 157 6 63 chr12 35093084 35093200 -108693255 + AluJo SINE Alu 1 122 -190 390 21 0 0 chr12 35093200 35093247 -108693208 + (CA)n Simple_repeat Simple_repeat 2 48 0 1629 157 6 63 chr12 35093247 35093449 -108693006 + AluJo SINE Alu 122 301 -11 896 119 30 0 chr12 35093465 35093599 -108692856 - AluSp/q SINE Alu -19 294 157 1837 123 8 4 chr12 35094575 35094836 -108691619 - AluSx SINE Alu -10 302 41 227 154 15 0 chr12 35095014 35095079 -108691376 + (TG)n Simple_repeat Simple_repeat 2 67 0 254 188 72 14 chr12 35095080 35095218 -108691237 + (TTGG)n Simple_repeat Simple_repeat 3 148 0 * 408 169 16 60 chr12 35095123 35095306 -108691149 + (TTTG)n Simple_repeat Simple_repeat 4 178 0 534 197 16 31 chr12 35095415 35095542 -108690913 - AluY SINE Alu -185 126 2 632 131 35 162 chr12 35095760 35095867 -108690588 + L1MB4 LINE L1 5862 5934 -246 1868 128 24 35 chr12 35095867 35096156 -108690299 + AluSq SINE Alu 1 286 -27 632 131 35 162 chr12 35096156 35096246 -108690209 + L1MB4 LINE L1 5934 6034 -146 2251 91 7 3 chr12 35096246 35096532 -108689923 + AluSg SINE Alu 1 287 -23 1980 100 0 36 chr12 35096536 35096817 -108689638 + AluSc SINE Alu 1 271 -38 1919 91 0 0 chr12 35097039 35097280 -108689175 + AluSg/x SINE Alu 69 309 -1 432 290 98 27 chr12 35099010 35099193 -108687262 + LTR33 LTR ERVL 12 207 -314 694 214 31 36 chr12 35099245 35099441 -108687014 + LTR33 LTR ERVL 327 521 0 880 197 25 102 chr12 35099669 35099715 -108686740 + L1MC4 LINE L1 7741 7789 -253 984 155 0 31 chr12 35099715 35099876 -108686579 + FRAM SINE Alu 5 160 -6 880 197 25 102 chr12 35099876 35100175 -108686280 + L1MC4 LINE L1 7789 8042 0 538 318 109 49 chr12 35100219 35100390 -108686065 + L1MC4a LINE L1 5307 5466 -655 1993 96 7 11 chr12 35100390 35100660 -108685795 + AluSx SINE Alu 37 305 -7 538 318 109 49 chr12 35100660 35100967 -108685488 + L1MC4a LINE L1 5466 5706 -415 2207 78 4 0 chr12 35100967 35101235 -108685220 - AluSx SINE Alu -18 294 26 538 318 109 49 chr12 35101235 35101303 -108685152 + L1MC4a LINE L1 5706 5768 -353 1674 177 11 4 chr12 35101306 35101583 -108684872 + AluJb SINE Alu 1 279 -33 2487 61 7 3 chr12 35101835 35102132 -108684323 + AluSp SINE Alu 1 298 -15 694 114 0 19 chr12 35102564 35102669 -108683786 - AluSg/x SINE Alu -9 301 199 235 53 0 0 chr12 35102770 35102808 -108683647 + AluJb SINE Alu 262 299 0 2397 87 0 3 chr12 35103390 35103689 -108682766 + AluSc SINE Alu 1 298 -11 252 89 89 0 chr12 35103689 35103790 -108682665 + (TA)n Simple_repeat Simple_repeat 1 110 0 2132 113 7 0 chr12 35104706 35104998 -108681457 - AluSx SINE Alu -17 295 2 244 273 0 0 chr12 35105529 35105606 -108680849 + CT-rich Low_complexity Low_complexity 1 77 0 410 307 121 29 chr12 35106825 35107105 -108679350 - L1MC/D LINE L1 -2002 5806 5501 885 180 47 73 chr12 35107115 35107348 -108679107 - L1MD2 LINE L1 -15 6344 6118 2545 57 0 0 chr12 35107956 35108254 -108678201 + AluSx SINE Alu 1 298 -14 2193 103 23 10 chr12 35108689 35108990 -108677465 - AluSx SINE Alu -7 305 1 37 0 0 0 chr12 35109057 35109094 -108677361 + AT_rich Low_complexity Low_complexity 1 37 0 741 50 89 0 chr12 35109094 35109195 -108677260 - HY1 scRNA scRNA -2 110 1 23 0 0 0 chr12 35109745 35109768 -108676687 + AT_rich Low_complexity Low_complexity 1 23 0 1805 172 0 13 chr12 35111356 35111670 -108674785 + AluJb SINE Alu 1 310 -2 311 28 0 0 chr12 35112005 35112041 -108674414 - U2 snRNA snRNA -152 36 1 1447 124 4 26 chr12 35114105 35114338 -108672117 + AluJo SINE Alu 85 312 0 31 0 0 0 chr12 35114584 35114615 -108671840 + AT_rich Low_complexity Low_complexity 1 31 0 1951 226 78 115 chr12 35114793 35115305 -108671150 + L2 LINE L2 1951 2480 -833 1833 139 46 4 chr12 35115305 35115586 -108670869 + AluJo SINE Alu 6 298 -14 1951 226 78 115 chr12 35115586 35116149 -108670306 + L2 LINE L2 2480 3069 -244 1164 139 0 0 chr12 35116201 35116366 -108670089 + FRAM SINE Alu 11 175 -1 516 237 36 104 chr12 35116377 35116626 -108669829 + L2 LINE L2 3082 3313 0 21 36 0 0 chr12 35116777 35116805 -108669650 + AT_rich Low_complexity Low_complexity 1 28 0 654 228 31 0 chr12 35117386 35117513 -108668942 + FLAM_A SINE Alu 1 131 -2 2623 47 0 0 chr12 35117958 35118259 -108668196 - AluY SINE Alu -10 301 1 23 33 0 0 chr12 35118358 35118388 -108668067 + AT_rich Low_complexity Low_complexity 1 30 0 1516 162 13 45 chr12 35118391 35118699 -108667756 + AluJb SINE Alu 1 298 -14 932 184 6 18 chr12 35118780 35118943 -108667512 - FRAM SINE Alu -4 162 2 320 214 36 12 chr12 35118987 35119071 -108667384 + L1ME LINE L1 5698 5783 -338 627 76 36 53 chr12 35119300 35119699 -108666756 + (TA)n Simple_repeat Simple_repeat 1 392 0 2035 144 0 0 chr12 35119699 35119983 -108666472 - AluSx SINE Alu -27 285 2 1717 193 7 0 chr12 35120496 35120791 -108665664 - AluJo SINE Alu -15 297 1 338 296 125 17 chr12 35121266 35121442 -108665013 - MIR SINE MIR -15 247 53 259 307 55 49 chr12 35121484 35121647 -108664808 + MIR3 SINE MIR 32 195 -13 603 249 83 6 chr12 35121968 35122137 -108664318 + MIR SINE MIR 48 229 -33 4114 193 107 21 chr12 35123062 35123856 -108662599 - MER21B LTR ERV1 -1 862 1 62 52 0 0 chr12 35124378 35124475 -108661980 + AT_rich Low_complexity Low_complexity 1 97 0 705 186 0 0 chr12 35124577 35124679 -108661776 + FLAM_A SINE Alu 12 113 -29 2303 86 13 0 chr12 35124956 35125258 -108661197 + AluSx SINE Alu 1 306 -6 243 0 0 0 chr12 35125391 35125418 -108661037 + (T)n Simple_repeat Simple_repeat 1 27 0 843 164 113 19 chr12 35125893 35126052 -108660403 + AluJb SINE Alu 137 310 -2 2322 87 3 0 chr12 35126605 35126903 -108659552 - AluSg SINE Alu -11 299 1 28 0 0 0 chr12 35126903 35126931 -108659524 + AT_rich Low_complexity Low_complexity 1 28 0 1846 156 24 0 chr12 35127032 35127327 -108659128 - AluSx SINE Alu -2 310 9 390 108 14 54 chr12 35127327 35127401 -108659054 - L1MC2 LINE L1 -374 5970 5900 496 151 0 0 chr12 35127401 35127474 -108658981 - FLAM SINE Alu -10 133 61 914 172 178 44 chr12 35127474 35127622 -108658833 + L1MC4 LINE L1 6929 7056 -986 333 68 0 0 chr12 35127622 35127666 -108658789 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 914 172 178 44 chr12 35127666 35127837 -108658618 + L1MC4 LINE L1 7056 7291 -751 2117 118 3 7 chr12 35127845 35128141 -108658314 - AluSx SINE Alu -17 295 1 2543 121 105 5 chr12 35128141 35128589 -108657866 - L1MC2 LINE L1 -425 5908 5416 5228 184 86 76 chr12 35128603 35129062 -108657393 - L1MC4 LINE L1 -2 8040 7587 2109 101 28 0 chr12 35129062 35129349 -108657106 - AluSg SINE Alu -15 295 1 5228 184 86 76 chr12 35129349 35129384 -108657071 - L1MC4 LINE L1 -455 7587 7554 2362 87 10 0 chr12 35129384 35129682 -108656773 - AluY SINE Alu -10 301 1 5228 184 86 76 chr12 35129682 35129983 -108656472 - L1MC4 LINE L1 -488 7554 7257 2060 122 7 0 chr12 35129983 35130279 -108656176 + AluSx SINE Alu 1 298 -14 5228 184 86 76 chr12 35130279 35131036 -108655419 - L1MC4 LINE L1 -785 7257 6471 2033 162 43 28 chr12 35131037 35131581 -108654874 - MLT2A2 LTR ERVL 0 554 1 557 238 191 47 chr12 35131604 35131842 -108654613 - L1MC4a LINE L1 -1370 6438 6147 183 42 0 0 chr12 35131842 35131866 -108654589 + (TG)n Simple_repeat Simple_repeat 2 25 0 557 238 191 47 chr12 35131866 35131926 -108654529 - L1MC4a LINE L1 -1661 6147 6097 1704 152 0 18 chr12 35131966 35132249 -108654206 - AluJo SINE Alu 0 312 35 2462 73 0 13 chr12 35132952 35133267 -108653188 - AluY SINE Alu 0 311 1 620 130 87 17 chr12 35133267 35133382 -108653073 - AluJo SINE Alu -176 136 14 246 133 0 0 chr12 35133484 35133529 -108652926 - Alu SINE Alu 0 302 258 696 186 8 16 chr12 35133529 35133658 -108652797 + AluJb SINE Alu 179 306 -6 2310 104 0 0 chr12 35133662 35133960 -108652495 + AluSc SINE Alu 1 298 -11 225 282 161 16 chr12 35133979 35134103 -108652352 - L2 LINE L2 -1107 2207 2066 822 153 0 22 chr12 35134130 35134267 -108652188 + AluJo SINE Alu 1 134 -178 1684 236 299 7 chr12 35134267 35135101 -108651354 - L2 LINE L2 -1262 2052 976 2076 118 3 45 chr12 35135124 35135438 -108651017 - AluSq SINE Alu -12 301 1 195 247 148 12 chr12 35135458 35135539 -108650916 + MIR SINE MIR 161 252 -10 371 267 57 80 chr12 35135543 35135719 -108650736 + MER5B DNA MER1_type 1 172 -6 284 214 366 0 chr12 35135919 35136031 -108650424 + MER5A DNA MER1_type 31 183 -6 2353 95 0 0 chr12 35136460 35136756 -108649699 - AluY SINE Alu -15 296 1 848 170 44 159 chr12 35136800 35137070 -108649385 - MER8 DNA MER2_type 0 239 1 1888 92 115 0 chr12 35137673 35137934 -108648521 - AluSg SINE Alu -19 291 1 955 90 8 0 chr12 35137962 35138084 -108648371 - AluSq/x SINE Alu -189 123 1 22 0 0 0 chr12 35139840 35139862 -108646593 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 35142219 35142241 -108644214 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr12 35142267 35142296 -108644159 + AT_rich Low_complexity Low_complexity 1 29 0 198 233 67 0 chr12 35143305 35143365 -108643090 + L2 LINE L2 3207 3270 -2 2197 117 0 0 chr12 35143977 35144268 -108642187 + AluSq SINE Alu 1 291 -22 185 0 40 0 chr12 35144277 35144302 -108642153 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 713 182 177 0 chr12 35144996 35145188 -108641267 - MIR SINE MIR -14 248 23 1030 135 153 0 chr12 35145189 35145359 -108641096 - AluJo SINE Alu -114 198 3 2164 126 37 50 chr12 35145503 35145809 -108640646 + THE1C LTR MaLR 1 305 -70 2281 92 0 0 chr12 35145809 35146126 -108640329 - AluY SINE Alu 0 317 1 2164 126 37 50 chr12 35146126 35146197 -108640258 + THE1C LTR MaLR 305 375 0 2029 127 0 56 chr12 35146252 35146576 -108639879 + AluSx SINE Alu 1 306 -6 401 186 106 35 chr12 35146683 35146796 -108639659 + MER5C DNA MER1_type 2 122 -202 260 212 152 0 chr12 35146825 35146891 -108639564 + MER5C DNA MER1_type 234 309 -15 2122 98 17 7 chr12 35146892 35147187 -108639268 - AluSq SINE Alu -15 298 1 1390 238 63 19 chr12 35147211 35147396 -108639059 + MER58D DNA MER1_type 5 180 -2240 2247 86 4 0 chr12 35147396 35147708 -108638747 - AluSg SINE Alu 0 313 1 1390 238 63 19 chr12 35147708 35147887 -108638568 + MER58D DNA MER1_type 180 386 0 2291 96 3 0 chr12 35148441 35148732 -108637723 - AluSc SINE Alu -17 292 1 1775 99 130 0 chr12 35149462 35149715 -108636740 + AluSx SINE Alu 5 290 -12 312 325 43 70 chr12 35150216 35150545 -108635910 + L2 LINE L2 2366 2685 -629 823 202 76 15 chr12 35150545 35150769 -108635686 + AluJo SINE Alu 101 336 0 240 278 162 73 chr12 35150786 35151176 -108635279 + L2 LINE L2 2725 3187 -85 2256 103 0 3 chr12 35151637 35151937 -108634518 + AluSg SINE Alu 1 299 -11 205 364 73 18 chr12 35152107 35152217 -108634238 + L2 LINE L2 2750 2865 -449 1877 137 0 45 chr12 35152438 35152612 -108633843 - AluJb SINE Alu -12 300 145 2205 101 7 10 chr12 35152612 35152908 -108633547 - AluSc SINE Alu -14 295 1 1877 137 0 45 chr12 35152908 35153047 -108633408 - AluJb SINE Alu -167 145 1 428 278 164 23 chr12 35153468 35153864 -108632591 + L1MEd LINE L1 675 1126 -4993 298 304 56 8 chr12 35154033 35154158 -108632297 + MIR SINE MIR 105 235 -27 769 318 132 68 chr12 35154636 35154756 -108631699 + L2 LINE L2 90 201 -3112 1966 98 58 0 chr12 35154756 35155032 -108631423 - AluSp SINE Alu -21 292 1 769 318 132 68 chr12 35155032 35156095 -108630360 + L2 LINE L2 201 1195 -2118 2305 100 0 3 chr12 35156095 35156395 -108630060 + AluSg SINE Alu 1 299 -11 2455 75 3 0 chr12 35156402 35156710 -108629745 + AluSp SINE Alu 1 309 -4 769 318 132 68 chr12 35156710 35157083 -108629372 + L2 LINE L2 1200 1548 -1765 2340 93 10 0 chr12 35157083 35157384 -108629071 - AluSq SINE Alu -9 304 1 769 318 132 68 chr12 35157384 35157671 -108628784 + L2 LINE L2 1548 3307 -6 2121 118 3 0 chr12 35157999 35158288 -108628167 + AluSx SINE Alu 23 312 0 1837 161 16 10 chr12 35158773 35159078 -108627377 + AluJo SINE Alu 1 307 -5 34 0 0 0 chr12 35160171 35160205 -108626250 + AT_rich Low_complexity Low_complexity 1 34 0 2177 107 3 3 chr12 35160654 35160943 -108625512 + AluSq SINE Alu 1 289 -24 2085 132 10 0 chr12 35161362 35161657 -108624798 + AluSx SINE Alu 1 298 -14 364 120 0 0 chr12 35162232 35162305 -108624150 - Alu SINE Alu 0 308 236 1018 141 0 7 chr12 35162305 35162454 -108624001 - AluSq/x SINE Alu -165 148 1 2052 64 131 0 chr12 35162584 35162851 -108623604 + AluSx SINE Alu 1 302 0 982 192 0 6 chr12 35162856 35163023 -108623432 + FRAM SINE Alu 1 166 0 230 410 20 0 chr12 35163442 35163542 -108622913 - L2 LINE L2 -19 3253 3152 2393 71 0 14 chr12 35163905 35164199 -108622256 - AluY SINE Alu -21 290 1 21 57 0 0 chr12 35164371 35164406 -108622049 + AT_rich Low_complexity Low_complexity 1 35 0 1445 197 99 38 chr12 35166042 35166407 -108620048 + MSTD LTR MaLR 1 387 -9 1784 182 115 3 chr12 35167159 35167550 -108618905 + MER74A LTR ERVL 1 435 -123 2380 185 90 8 chr12 35167755 35168286 -108618169 - L1MB7 LINE L1 0 6184 5610 8439 117 30 14 chr12 35168313 35169432 -108617023 - HSMAR2 DNA Mariner 0 1302 158 1677 155 19 62 chr12 35169432 35169754 -108616701 - AluJo SINE Alu -4 308 1 8439 117 30 14 chr12 35169754 35169915 -108616540 - HSMAR2 DNA Mariner -1144 158 1 1917 194 17 3 chr12 35170646 35170997 -108615458 - MER52A LTR ERV1 0 1755 1400 1456 198 23 0 chr12 35170967 35171310 -108615145 - MER52A LTR ERV1 -1099 656 247 * 352 221 0 0 chr12 35171310 35171378 -108615077 - MER52A LTR ERV1 -1683 72 5 1785 121 98 8 chr12 35171560 35171825 -108614630 - AluSx SINE Alu -23 289 1 368 279 109 20 chr12 35172870 35173017 -108613438 - MIR SINE MIR -75 187 28 1431 115 217 12 chr12 35173995 35174271 -108612184 + AluSx SINE Alu 1 302 0 2015 121 23 16 chr12 35175345 35175652 -108610803 + AluSx SINE Alu 1 309 -3 182 340 19 0 chr12 35175652 35175705 -108610750 + MER5A DNA MER1_type 68 121 -68 793 185 99 0 chr12 35175719 35175870 -108610585 - AluSg/x SINE Alu -12 298 133 26 50 0 0 chr12 35176949 35176989 -108609466 + AT_rich Low_complexity Low_complexity 1 40 0 351 271 51 33 chr12 35177025 35177177 -108609278 - MIR SINE MIR -66 142 11 272 284 0 0 chr12 35177272 35177339 -108609116 - MIR SINE MIR -7 255 189 2184 142 0 0 chr12 35177920 35178222 -108608233 + AluSx SINE Alu 1 302 -10 303 304 44 19 chr12 35178240 35178398 -108608057 + L1M4 LINE L1 77 238 -6304 490 194 47 0 chr12 35178584 35178713 -108607742 + L1M4 LINE L1 1423 1557 -5077 411 195 0 0 chr12 35178722 35178799 -108607656 + FLAM_A SINE Alu 53 129 -13 1081 230 17 34 chr12 35178806 35179152 -108607303 + L1M4 LINE L1 1513 1852 -4794 1664 157 66 11 chr12 35179172 35179458 -108606997 + AluJo SINE Alu 1 302 -10 2279 74 16 19 chr12 35179473 35179782 -108606673 + AluY SINE Alu 1 308 -3 259 314 55 24 chr12 35179995 35180285 -108606170 + L1M4 LINE L1 2311 2609 -4216 2039 111 3 30 chr12 35181034 35181332 -108605123 - AluJb SINE Alu -21 291 2 296 250 0 0 chr12 35181927 35181987 -108604468 + L2 LINE L2 3212 3271 -1 186 343 61 30 chr12 35182045 35182144 -108604311 + MIR SINE MIR 19 120 -88 264 170 0 0 chr12 35182551 35182604 -108603851 + A-rich Low_complexity Low_complexity 1 53 0 1991 112 3 7 chr12 35183313 35183599 -108602856 + AluSg SINE Alu 3 287 -23 2425 17 11 3 chr12 35183699 35183986 -108602469 - AluY SINE Alu -22 289 1 212 342 63 0 chr12 35184084 35184163 -108602292 - L2 LINE L2 0 3272 3189 37 0 0 0 chr12 35185068 35185105 -108601350 + AT_rich Low_complexity Low_complexity 1 37 0 840 167 79 3 chr12 35185105 35185322 -108601133 + AluJb SINE Alu 1 301 -11 388 252 8 16 chr12 35185329 35185456 -108600999 - L1MC5 LINE L1 -65 7896 7771 323 254 44 53 chr12 35185524 35185638 -108600817 + L2 LINE L2 3201 3313 0 2414 91 3 0 chr12 35186238 35186545 -108599910 - AluSp SINE Alu -5 308 1 228 221 162 0 chr12 35187811 35187879 -108598576 + MLT1L LTR MaLR 537 615 0 2204 108 0 3 chr12 35188152 35188449 -108598006 - AluSg SINE Alu -14 296 1 926 208 118 47 chr12 35188475 35188561 -108597894 - L1ME1 LINE L1 -9 6157 6079 3419 120 7 35 chr12 35188561 35189103 -108597352 - MER1A DNA MER1_type 0 527 1 926 208 118 47 chr12 35189103 35189338 -108597117 - L1ME1 LINE L1 -87 6079 5813 579 218 76 91 chr12 35189933 35190130 -108596325 - MIR SINE MIR 0 262 69 23 0 0 0 chr12 35190314 35190337 -108596118 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr12 35190806 35190834 -108595621 + AT_rich Low_complexity Low_complexity 1 28 0 1312 126 6 0 chr12 35190917 35191120 -108595335 + AluSg/x SINE Alu 103 306 0 883 239 45 1 chr12 35192401 35192640 -108593815 - MIR SINE MIR -7 255 4 2332 95 0 7 chr12 35192866 35193170 -108593285 - AluSq SINE Alu -10 303 2 339 135 19 0 chr12 35193352 35193404 -108593051 - AluSg/x SINE Alu -51 249 197 180 200 0 107 chr12 35193468 35193543 -108592912 - MIR SINE MIR -129 133 67 1066 204 40 13 chr12 35194022 35194248 -108592207 - MIR SINE MIR -24 238 7 200 246 29 87 chr12 35194974 35195043 -108591412 - MIR SINE MIR -121 87 23 273 283 152 86 chr12 35195187 35195456 -108590999 + L2 LINE L2 2124 2410 -904 1951 117 17 33 chr12 35195511 35195834 -108590621 + AluJb SINE Alu 1 312 0 380 274 11 21 chr12 35195870 35195965 -108590490 - MIR SINE MIR -157 105 12 2197 118 10 0 chr12 35195984 35196288 -108590167 - AluSx SINE Alu -5 307 1 196 292 92 60 chr12 35196469 35196654 -108589801 + L2 LINE L2 2544 2734 -580 181 303 157 11 chr12 35197307 35197336 -108589119 + L2 LINE L2 3072 3095 -218 1930 156 7 3 chr12 35197336 35197643 -108588812 - AluJo SINE Alu -4 308 1 181 303 157 11 chr12 35197643 35197791 -108588664 + L2 LINE L2 3095 3275 -38 348 24 0 0 chr12 35197933 35197974 -108588481 + (TA)n Simple_repeat Simple_repeat 2 42 0 342 0 0 0 chr12 35198596 35198634 -108587821 + (TA)n Simple_repeat Simple_repeat 1 38 0 1728 145 25 11 chr12 35198637 35198920 -108587535 - AluJb SINE Alu -25 287 1 253 379 14 0 chr12 35199321 35199429 -108587026 - MIR SINE MIR -105 103 7 267 83 42 0 chr12 35199453 35199501 -108586954 - L1MB3 LINE L1 0 6183 6134 185 267 57 95 chr12 35200427 35200500 -108585955 + MIR3 SINE MIR 84 153 -55 1752 195 0 0 chr12 35200500 35200802 -108585653 - AluJb SINE Alu -10 302 1 185 267 57 95 chr12 35200802 35200833 -108585622 + MIR3 SINE MIR 153 184 -24 26 30 0 0 chr12 35202151 35202184 -108584271 + AT_rich Low_complexity Low_complexity 1 33 0 612 298 184 20 chr12 35202420 35202879 -108583576 + L2 LINE L2 2613 3150 -163 2686 30 0 0 chr12 35202952 35203251 -108583204 - AluY SINE Alu -12 299 1 304 305 95 29 chr12 35203368 35203473 -108582982 + L2 LINE L2 3200 3311 -2 445 289 121 29 chr12 35203501 35203740 -108582715 - MIR SINE MIR 0 262 2 2369 79 13 3 chr12 35204513 35204816 -108581639 + AluSp SINE Alu 1 306 -7 24 0 0 0 chr12 35205482 35205506 -108580949 + AT_rich Low_complexity Low_complexity 1 24 0 230 311 100 0 chr12 35206845 35206935 -108579520 - MIR SINE MIR -87 175 77 2226 181 26 14 chr12 35206935 35207360 -108579095 + MSTB1 LTR MaLR 1 430 -2 217 343 20 30 chr12 35208586 35208685 -108577770 + L2 LINE L2 3179 3276 -37 2380 52 3 3 chr12 35209149 35209440 -108577015 + AluY SINE Alu 1 291 -20 317 181 28 14 chr12 35209630 35209702 -108576753 + MER34 LTR ERV1 442 514 -28 198 103 0 0 chr12 35210424 35210453 -108576002 + (TG)n Simple_repeat Simple_repeat 2 30 0 786 186 7 14 chr12 35210479 35210624 -108575831 - FRAM SINE Alu -33 143 1 2213 129 0 0 chr12 35211069 35211371 -108575084 - AluSx SINE Alu -10 302 1 2013 100 4 0 chr12 35211808 35212069 -108574386 + AluSx SINE Alu 6 267 -45 1938 214 152 7 chr12 35212202 35212750 -108573705 + L1ME1 LINE L1 5505 6131 -35 1683 163 57 0 chr12 35212751 35213034 -108573421 - AluJb SINE Alu -11 301 3 326 31 0 62 chr12 35213118 35213182 -108573273 + (TA)n Simple_repeat Simple_repeat 1 60 0 798 244 121 4 chr12 35213187 35213438 -108573017 - L1ME LINE L1 -375 5789 5508 372 116 35 0 chr12 35213475 35213561 -108572894 + (TA)n Simple_repeat Simple_repeat 1 89 0 2273 98 0 3 chr12 35213694 35213991 -108572464 + AluSc SINE Alu 1 296 -13 215 276 58 58 chr12 35214442 35214529 -108571926 - MIR3 SINE MIR -5 203 117 261 306 224 8 chr12 35214561 35214695 -108571760 - MIR SINE MIR -94 168 6 479 367 78 45 chr12 35215344 35215742 -108570713 - L2 LINE L2 0 3272 2862 1052 100 0 7 chr12 35215748 35215888 -108570567 - AluSq/x SINE Alu -173 139 1 404 214 51 101 chr12 35216713 35216800 -108569655 - LTR16A LTR ERVL -222 228 153 2144 114 3 0 chr12 35216800 35217098 -108569357 - AluSx SINE Alu -9 303 5 404 214 51 101 chr12 35217098 35217188 -108569267 - LTR16A LTR ERVL -297 153 60 905 233 15 15 chr12 35217236 35217507 -108568948 + L1MA9 LINE L1 6006 6276 -36 245 293 93 0 chr12 35217774 35217924 -108568531 - L1ME3 LINE L1 -212 5950 5787 1228 96 46 67 chr12 35218165 35218404 -108568051 + MER50 LTR ERV1 1 234 -500 * 1485 168 3 14 chr12 35218402 35218687 -108567768 + MER50 LTR ERV1 433 714 -20 195 42 0 0 chr12 35219702 35219726 -108566729 + (TG)n Simple_repeat Simple_repeat 2 25 0 2319 97 0 0 chr12 35220684 35220993 -108565462 - AluY SINE Alu -2 309 1 2272 98 3 0 chr12 35221002 35221299 -108565156 - AluSx SINE Alu -14 298 1 693 52 21 0 chr12 35221476 35221573 -108564882 - L1PB1 LINE L1 0 6151 6053 2133 168 55 51 chr12 35222188 35222514 -108563941 - L1MA9 LINE L1 -6 6306 5983 2039 125 10 10 chr12 35222514 35222818 -108563637 - AluJb SINE Alu -8 304 1 1361 173 108 14 chr12 35222827 35223104 -108563351 - AluJo SINE Alu -9 303 1 2133 168 55 51 chr12 35223104 35223252 -108563203 - L1MA9 LINE L1 -336 5976 5806 286 42 42 0 chr12 35223252 35223300 -108563155 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2133 168 55 51 chr12 35223300 35223391 -108563064 - L1MA9 LINE L1 -506 5806 5717 2116 126 0 0 chr12 35223722 35224015 -108562440 - AluSx SINE Alu -17 295 3 447 279 153 51 chr12 35224061 35224434 -108562021 - MLT1J LTR MaLR -1 510 100 345 192 0 0 chr12 35224465 35224538 -108561917 - LTR30 LTR ERV1 -98 624 552 328 248 83 9 chr12 35224537 35224646 -108561809 - MLT1J LTR MaLR -394 117 1 * 243 296 291 11 chr12 35225255 35225434 -108561021 - MIR SINE MIR 0 262 34 419 300 200 13 chr12 35225918 35226218 -108560237 + MLT1L LTR MaLR 10 365 -250 1878 125 65 44 chr12 35226727 35227094 -108559361 - THE1C LTR MaLR 0 375 1 894 267 59 4 chr12 35227095 35227331 -108559124 - MIR SINE MIR -12 250 2 195 200 238 50 chr12 35227434 35227514 -108558941 + MIR SINE MIR 35 129 -133 2048 114 44 0 chr12 35227544 35227842 -108558613 + AluY SINE Alu 1 311 0 241 370 81 19 chr12 35227919 35228130 -108558325 - L3 LINE CR1 -219 1358 1135 281 268 0 0 chr12 35228476 35228532 -108557923 + L3 LINE CR1 1517 1572 -5 229 266 0 43 chr12 35228648 35228742 -108557713 - L1MC4 LINE L1 -1339 6703 6614 194 0 39 0 chr12 35230484 35230510 -108555945 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 207 319 97 14 chr12 35231647 35231719 -108554736 + L2 LINE L2 3149 3226 -46 2083 84 33 4 chr12 35231739 35232032 -108554423 + AluSc SINE Alu 1 301 0 2072 85 85 0 chr12 35232384 35232665 -108553790 - AluY SINE Alu -6 305 1 2218 139 0 0 chr12 35234148 35234451 -108552004 - AluSx SINE Alu -9 303 1 2339 60 0 54 chr12 35235155 35235469 -108550986 - AluY SINE Alu -14 297 1 369 283 52 24 chr12 35235587 35235799 -108550656 + L1MC4a LINE L1 5558 5775 -346 24 32 0 0 chr12 35235897 35235928 -108550527 + AT_rich Low_complexity Low_complexity 1 31 0 561 129 0 12 chr12 35235928 35236013 -108550442 + AluS SINE Alu 1 84 -228 337 242 53 30 chr12 35236113 35236245 -108550210 + L1ME1 LINE L1 1597 1731 -4665 2336 71 7 0 chr12 35236245 35236551 -108549904 + AluSp SINE Alu 1 308 0 1837 128 0 102 chr12 35236564 35236907 -108549548 + AluSx SINE Alu 3 310 -2 2108 235 60 80 chr12 35237433 35238184 -108548271 + L1ME1 LINE L1 3451 4215 -2020 336 48 0 0 chr12 35238184 35238226 -108548229 + (CA)n Simple_repeat Simple_repeat 2 43 0 2108 235 60 80 chr12 35238226 35238973 -108547482 + L1ME1 LINE L1 4215 4975 -1260 2307 118 0 0 chr12 35238973 35239277 -108547178 + AluSx SINE Alu 1 304 -8 1999 133 13 17 chr12 35239279 35239579 -108546876 + AluSx SINE Alu 1 299 -13 2108 235 60 80 chr12 35239579 35240151 -108546304 + L1ME1 LINE L1 4976 5466 -769 2045 152 7 0 chr12 35240151 35240460 -108545995 + AluJb SINE Alu 1 311 -1 2108 235 60 80 chr12 35240460 35240783 -108545672 + L1ME1 LINE L1 5466 5794 -441 694 218 24 97 chr12 35240795 35240926 -108545529 + L1ME1 LINE L1 5908 6006 -229 1935 151 3 3 chr12 35240926 35241224 -108545231 + AluJo SINE Alu 1 298 -14 694 218 24 97 chr12 35241224 35241390 -108545065 + L1ME1 LINE L1 6006 6183 -52 354 328 113 39 chr12 35241421 35241756 -108544699 + L1MC4a LINE L1 5771 6130 -1678 1576 100 9 18 chr12 35242140 35242360 -108544095 - AluSx SINE Alu -92 220 3 2164 132 0 3 chr12 35242364 35242667 -108543788 - AluSg SINE Alu -8 302 1 27 0 0 0 chr12 35242669 35242696 -108543759 + AT_rich Low_complexity Low_complexity 1 27 0 1717 133 0 50 chr12 35243190 35243469 -108542986 + AluSx SINE Alu 43 307 -5 1892 162 0 29 chr12 35243583 35243892 -108542563 + AluJb SINE Alu 1 300 -12 912 202 12 12 chr12 35245135 35245308 -108541147 - AluJo/FRAM SINE Alu -6 306 134 2479 63 0 3 chr12 35245308 35245611 -108540844 - AluY SINE Alu -9 302 1 873 147 22 22 chr12 35245630 35245766 -108540689 + AluJo SINE Alu 1 136 -176 2343 69 10 29 chr12 35245840 35246146 -108540309 - AluSp SINE Alu -13 300 1 5795 120 11 34 chr12 35246304 35247687 -108538768 + L1PB2 LINE L1 4781 6143 -8 181 344 98 41 chr12 35248017 35248139 -108538316 + L2 LINE L2 3138 3266 -6 658 268 73 37 chr12 35248232 35248478 -108537977 + MIR SINE MIR 6 260 -2 696 172 0 0 chr12 35250404 35250520 -108535935 - AluSg/x SINE Alu -2 310 195 1891 117 7 10 chr12 35250855 35251154 -108535301 + AluSc SINE Alu 7 304 -5 657 101 10 10 chr12 35251185 35251284 -108535171 + AluS SINE Alu 1 99 -213 808 171 36 0 chr12 35251284 35251424 -108535031 + MER58B DNA MER1_type 196 340 -1 24 32 0 0 chr12 35251543 35251574 -108534881 + AT_rich Low_complexity Low_complexity 1 31 0 346 185 0 0 chr12 35252487 35252552 -108533903 + FLAM_A SINE Alu 1 65 -67 2205 75 4 14 chr12 35253586 35253886 -108532569 + AluSp SINE Alu 6 302 0 207 313 188 0 chr12 35254683 35254795 -108531660 - MIR SINE MIR -21 241 109 2291 88 0 7 chr12 35255291 35255585 -108530870 + AluSq SINE Alu 1 292 -21 225 269 127 37 chr12 35255966 35256100 -108530355 - MIR SINE MIR -42 220 75 2042 114 17 3 chr12 35256365 35256663 -108529792 + AluSx SINE Alu 1 302 -10 2275 106 10 0 chr12 35256834 35257135 -108529320 - AluSx SINE Alu -8 304 1 25 0 0 0 chr12 35258837 35258862 -108527593 + AT_rich Low_complexity Low_complexity 1 25 0 2231 94 3 0 chr12 35262065 35262351 -108524104 - AluSx SINE Alu -25 287 1 236 167 0 0 chr12 35262355 35262397 -108524058 - L1M4 LINE L1 -309 5869 5828 1547 166 93 0 chr12 35262398 35262711 -108523744 + MER7A DNA MER2_type 2 341 -5 360 167 108 10 chr12 35262712 35262814 -108523641 - L1M4 LINE L1 -367 5817 5706 2073 131 3 0 chr12 35262873 35263170 -108523285 - AluSx SINE Alu -14 298 1 2557 62 0 0 chr12 35263655 35263961 -108522494 - AluY SINE Alu -5 306 1 2416 74 3 0 chr12 35265198 35265497 -108520958 + AluSp SINE Alu 1 300 -13 195 296 0 42 chr12 35266502 35266573 -108519882 - MIR SINE MIR -103 105 38 2087 131 0 32 chr12 35267292 35267605 -108518850 - AluSq SINE Alu -10 303 1 1919 133 41 3 chr12 35268309 35268603 -108517852 - AluSx SINE Alu -7 305 1 705 159 0 38 chr12 35268944 35269076 -108517379 - FLAM_C SINE Alu -16 127 1 24 0 0 0 chr12 35269221 35269245 -108517210 + AT_rich Low_complexity Low_complexity 1 24 0 255 81 0 0 chr12 35269883 35269920 -108516535 + MADE1 DNA Mariner 2 38 -42 2283 78 10 0 chr12 35270351 35270644 -108515811 - AluY SINE Alu -15 296 1 2323 73 0 3 chr12 35270978 35271267 -108515188 - AluSg SINE Alu -21 289 2 1934 143 10 10 chr12 35271835 35272135 -108514320 - AluJo SINE Alu -12 300 1 282 211 35 0 chr12 35272331 35272380 -108514075 + MER7A DNA MER2_type 4 54 -294 1586 116 113 14 chr12 35272380 35272664 -108513791 - MER1B DNA MER1_type -2 337 26 1391 197 49 0 chr12 35272663 35272947 -108513508 + MER7A DNA MER2_type 50 345 -1 * 342 254 88 26 chr12 35272976 35273090 -108513365 - L1ME3A LINE L1 -8 6162 6042 2152 106 48 0 chr12 35273240 35273533 -108512922 + AluSx SINE Alu 1 307 -5 525 277 125 19 chr12 35273622 35273800 -108512655 - L1M4 LINE L1 -1405 4741 4583 1262 183 168 23 chr12 35273800 35274062 -108512393 + AluJb SINE Alu 1 300 -2 525 277 125 19 chr12 35274062 35274251 -108512204 - L1M4 LINE L1 -1563 4583 4335 1443 57 0 6 chr12 35275479 35275654 -108510801 - AluSg/x SINE Alu -10 300 127 267 262 24 36 chr12 35276846 35276930 -108509525 + MIR SINE MIR 119 201 -61 921 287 46 31 chr12 35277444 35277859 -108508596 - LTR16A LTR ERVL -6 444 24 1714 163 20 17 chr12 35278120 35278415 -108508040 - AluJo SINE Alu -16 296 1 301 248 34 34 chr12 35278517 35278634 -108507821 - MER87 LTR ERV1 -26 515 399 2429 86 3 0 chr12 35279279 35279583 -108506872 + AluSp SINE Alu 1 305 -8 2370 93 0 3 chr12 35280431 35280743 -108505712 + AluSx SINE Alu 1 311 -1 2385 89 0 0 chr12 35281594 35281896 -108504559 + AluSg SINE Alu 1 302 -8 336 263 53 26 chr12 35282487 35282601 -108503854 - L2 LINE L2 -2 3311 3195 402 261 33 92 chr12 35283603 35283732 -108502723 + MIR3 SINE MIR 21 137 -71 2333 102 0 10 chr12 35283732 35284046 -108502409 + AluY SINE Alu 1 311 0 402 261 33 92 chr12 35284046 35284100 -108502355 + MIR3 SINE MIR 137 193 -15 2125 122 6 13 chr12 35284210 35284522 -108501933 + AluSx SINE Alu 1 310 -2 2093 115 7 7 chr12 35284524 35284820 -108501635 + AluSx SINE Alu 3 298 -14 386 228 20 20 chr12 35285388 35285489 -108500966 - MER94 DNA DNA -33 101 1 1665 154 10 50 chr12 35285535 35285834 -108500621 - AluJb SINE Alu -25 287 1 4742 144 41 41 chr12 35285898 35286502 -108499953 - L1PB4 LINE L1 -4 6152 5538 2307 125 3 0 chr12 35286502 35286813 -108499642 - AluSq SINE Alu -1 312 1 4742 144 41 41 chr12 35286813 35287304 -108499151 - L1PB4 LINE L1 -618 5538 5048 338 311 68 0 chr12 35287471 35287603 -108498852 - MIR SINE MIR 0 262 122 208 346 144 10 chr12 35287682 35287786 -108498669 - L2 LINE L2 -5 3267 3150 2664 14 0 0 chr12 35288298 35288586 -108497869 - AluYa5 SINE Alu 0 311 24 2320 141 60 74 chr12 35289180 35289614 -108496841 - MSTC LTR MaLR 0 428 1 470 283 52 12 chr12 35289874 35290047 -108496408 - L1MEc LINE L1 -6177 219 40 296 209 86 50 chr12 35290504 35290643 -108495812 - Charlie7 DNA MER1_type 0 2612 2469 328 253 0 23 chr12 35290652 35290739 -108495716 - Charlie7 DNA MER1_type -2516 96 12 540 311 90 6 chr12 35291472 35291784 -108494671 - L1MC4a LINE L1 -1894 5914 5577 2169 127 3 3 chr12 35292172 35292480 -108493975 + AluSx SINE Alu 5 312 0 1157 180 63 38 chr12 35292523 35292762 -108493693 + AluJo SINE Alu 35 279 -33 459 204 7 22 chr12 35292768 35292905 -108493550 + GA-rich Low_complexity Low_complexity 3 137 0 323 200 33 0 chr12 35293007 35293067 -108493388 + AluSp/q SINE Alu 164 225 -78 189 0 0 0 chr12 35293067 35293088 -108493367 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 443 323 37 18 chr12 35294090 35294254 -108492201 + MIR SINE MIR 9 175 -87 352 328 23 15 chr12 35294909 35295040 -108491415 - L3b LINE CR1 -255 1328 1197 1179 154 0 0 chr12 35295041 35295216 -108491239 - AluSq SINE Alu -13 300 126 2280 94 3 7 chr12 35295216 35295525 -108490930 - AluY SINE Alu -3 308 1 858 147 22 22 chr12 35295544 35295680 -108490775 + AluJo SINE Alu 1 136 -176 2280 72 13 30 chr12 35295754 35296059 -108490396 - AluSp SINE Alu -13 300 1 6257 119 11 34 chr12 35296217 35297600 -108488855 + L1PB2 LINE L1 4781 6143 -8 653 268 73 37 chr12 35298145 35298391 -108488064 + MIR SINE MIR 6 260 -2 2174 126 3 3 chr12 35300316 35300626 -108485829 - AluSx SINE Alu -2 310 1 1998 103 4 11 chr12 35300755 35301028 -108485427 + AluSx SINE Alu 1 271 -41 243 0 0 0 chr12 35301036 35301063 -108485392 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 315 309 86 5 chr12 35301073 35301283 -108485172 - L1M4 LINE L1 -2379 3767 3541 4591 105 38 4 chr12 35301287 35301964 -108484491 - Tigger4(Zombi) DNA MER2_type 0 2731 2032 6872 92 3 5 chr12 35301965 35303567 -108482888 - L1PA11 LINE L1 -1 7611 5997 13942 198 72 27 chr12 35303568 35307690 -108478765 - L1PA11 LINE L1 -2180 5404 4 12088 126 55 21 chr12 35307693 35308343 -108478112 - Tigger4(Zombi) DNA MER2_type -690 2041 1414 2862 3 0 0 chr12 35308343 35308648 -108477807 - AluYa5 SINE Alu -6 305 1 12088 126 55 21 chr12 35308648 35309971 -108476484 - Tigger4(Zombi) DNA MER2_type -1317 1414 2 2467 76 0 3 chr12 35310170 35310471 -108475984 - AluSx SINE Alu -12 300 1 242 185 11 54 chr12 35310811 35310903 -108475552 + (CAAA)n Simple_repeat Simple_repeat 1 88 0 1779 185 3 10 chr12 35311165 35311479 -108474976 + AluJo SINE Alu 1 312 0 442 330 113 57 chr12 35311662 35312309 -108474146 + L2 LINE L2 365 1073 -2241 2276 98 0 3 chr12 35312309 35312605 -108473850 + AluSx SINE Alu 1 295 -17 442 330 113 57 chr12 35312605 35312803 -108473652 + L2 LINE L2 1073 1258 -2056 270 357 48 18 chr12 35312853 35313021 -108473434 + L2 LINE L2 2686 2858 -456 241 351 53 38 chr12 35313051 35313182 -108473273 + L2 LINE L2 3136 3268 -4 245 238 0 16 chr12 35313682 35313745 -108472710 - L1ME LINE L1 -739 5431 5370 6050 124 19 15 chr12 35313756 35314769 -108471686 - L1PA16 LINE L1 -9 6157 5141 1430 193 11 7 chr12 35314769 35315049 -108471406 + L1P LINE L1 4810 5090 -1056 742 236 52 39 chr12 35315080 35315461 -108470994 - L1ME LINE L1 -802 5344 4959 1997 155 48 0 chr12 35315468 35315784 -108470671 + MER1B DNA MER1_type 9 339 0 2120 125 10 10 chr12 35315849 35316152 -108470303 + AluSx SINE Alu 1 303 -9 24 0 0 0 chr12 35316203 35316227 -108470228 + AT_rich Low_complexity Low_complexity 1 24 0 2218 103 0 0 chr12 35316663 35317017 -108469438 + AluSx SINE Alu 1 354 0 245 237 82 52 chr12 35317250 35317347 -108469108 + L2 LINE L2 3214 3313 0 204 40 0 0 chr12 35317527 35317552 -108468903 + (CA)n Simple_repeat Simple_repeat 2 26 0 1551 281 34 57 chr12 35318236 35318831 -108467624 + MLT1K LTR MaLR 2 582 -6 623 270 122 0 chr12 35319868 35320057 -108466398 + MIR SINE MIR 32 243 -19 209 205 121 72 chr12 35320582 35320665 -108465790 - L2 LINE L2 -631 2683 2597 2158 111 3 26 chr12 35320802 35321109 -108465346 + AluSx SINE Alu 3 302 -10 182 311 41 74 chr12 35321121 35321243 -108465212 - L2 LINE L2 -925 2389 2272 2372 68 20 3 chr12 35321274 35321568 -108464887 - AluY SINE Alu -12 299 1 281 228 114 26 chr12 35322183 35322297 -108464158 + MIR3 SINE MIR 49 172 -36 2562 55 0 16 chr12 35322826 35323138 -108463317 - AluSc SINE Alu -2 307 1 1737 144 38 14 chr12 35323288 35323579 -108462876 + AluJb SINE Alu 1 298 -14 2311 95 3 10 chr12 35323690 35323996 -108462459 + AluY SINE Alu 1 304 -7 284 211 56 0 chr12 35324057 35324128 -108462327 + MER116 DNA Mariner 2 76 -4 338 304 43 14 chr12 35324416 35324554 -108461901 - MIR3 SINE MIR -7 201 60 1470 183 44 0 chr12 35326596 35326893 -108459562 - AluJb SINE Alu 0 309 1 1782 168 50 0 chr12 35326910 35327207 -108459248 - AluJo SINE Alu 0 312 1 2223 125 0 0 chr12 35327323 35327628 -108458827 - AluSx SINE Alu -7 305 1 2349 95 3 0 chr12 35328292 35328588 -108457867 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr12 35328984 35329014 -108457441 + AT_rich Low_complexity Low_complexity 1 30 0 2284 95 14 3 chr12 35329768 35330064 -108456391 + AluSc SINE Alu 1 299 -10 2145 127 3 0 chr12 35330631 35330939 -108455516 + AluSg SINE Alu 1 309 -1 34 55 0 0 chr12 35331271 35331326 -108455129 + AT_rich Low_complexity Low_complexity 1 55 0 346 382 64 34 chr12 35331716 35331983 -108454472 + L2 LINE L2 2992 3266 -6 234 250 16 31 chr12 35332353 35332417 -108454038 + GA-rich Low_complexity Low_complexity 4 66 0 342 0 0 0 chr12 35332644 35332682 -108453773 + (TG)n Simple_repeat Simple_repeat 2 39 0 2305 105 0 3 chr12 35332714 35333020 -108453435 - AluSg SINE Alu -5 305 1 276 134 15 30 chr12 35333194 35333261 -108453194 + GA-rich Low_complexity Low_complexity 1 66 0 643 231 57 94 chr12 35333404 35333489 -108452966 + MER63A DNA MER1_type 2 89 -1599 678 180 90 0 chr12 35333489 35333611 -108452844 - FLAM_A SINE Alu 0 133 1 643 231 57 94 chr12 35333611 35333737 -108452718 + MER63A DNA MER1_type 89 205 -5 817 280 62 8 chr12 35334917 35335160 -108451295 + MIR SINE MIR 7 262 0 3724 142 19 2 chr12 35335594 35336163 -108450292 + L1PA16 LINE L1 5587 6165 -1 186 133 0 0 chr12 35336298 35336328 -108450127 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 298 247 90 22 chr12 35337281 35337370 -108449085 + MLT1K LTR MaLR 494 588 0 847 157 121 0 chr12 35337717 35337883 -108448572 - MER5A DNA MER1_type -3 186 1 1918 156 3 3 chr12 35337965 35338266 -108448189 - AluJo SINE Alu -11 301 1 671 144 127 0 chr12 35338443 35338561 -108447894 + FLAM_C SINE Alu 1 133 0 2049 121 13 10 chr12 35339908 35340206 -108446249 - AluSx SINE Alu -13 299 1 2124 128 0 0 chr12 35340344 35340640 -108445815 - AluSg SINE Alu -14 296 1 2306 81 0 10 chr12 35340653 35340948 -108445507 - AluSg SINE Alu -18 292 1 217 268 37 37 chr12 35341855 35341937 -108444518 + L3 LINE CR1 671 752 -825 419 339 81 21 chr12 35342183 35342419 -108444036 + L3 LINE CR1 1286 1535 -42 197 318 59 24 chr12 35342454 35342539 -108443916 - MER5A DNA MER1_type -54 135 48 1183 69 0 98 chr12 35342937 35343110 -108443345 + AluSg SINE Alu 1 156 -154 2515 74 0 10 chr12 35343415 35343725 -108442730 - AluSp SINE Alu -6 307 1 956 155 13 0 chr12 35343727 35343882 -108442573 - FRAM SINE Alu -14 162 6 346 287 114 38 chr12 35344138 35344375 -108442080 - L2 LINE L2 -430 2884 2630 2365 82 16 3 chr12 35344731 35345035 -108441420 + AluSg SINE Alu 1 308 -2 2424 60 26 3 chr12 35345609 35345911 -108440544 + AluSq SINE Alu 1 309 -4 2010 118 4 11 chr12 35347248 35347528 -108438927 - AluSx SINE Alu -14 298 21 2465 70 3 6 chr12 35347918 35348230 -108438225 + AluY SINE Alu 1 311 0 183 280 80 13 chr12 35349025 35349100 -108437355 - L2 LINE L2 -665 2649 2570 2327 96 7 3 chr12 35349112 35349415 -108437040 + AluSp SINE Alu 1 304 -9 452 326 46 20 chr12 35349558 35349754 -108436701 + MIR SINE MIR 48 248 -14 228 111 0 0 chr12 35350176 35350212 -108436243 + (CA)n Simple_repeat Simple_repeat 2 37 0 322 310 25 65 chr12 35350236 35350436 -108436019 + L2 LINE L2 2864 3055 -217 673 165 47 16 chr12 35350470 35350597 -108435858 + FLAM_A SINE Alu 3 133 0 233 255 0 0 chr12 35350636 35350687 -108435768 + L2 LINE L2 3221 3271 -1 2127 115 0 7 chr12 35350793 35351089 -108435366 + AluSx SINE Alu 5 298 -14 1897 133 78 0 chr12 35351161 35351454 -108435001 + L1PA16 LINE L1 5841 6156 -10 21 0 0 0 chr12 35351652 35351673 -108434782 + AT_rich Low_complexity Low_complexity 1 21 0 308 212 26 88 chr12 35351692 35351805 -108434650 + MIR SINE MIR 110 215 -47 2008 129 3 20 chr12 35351873 35352167 -108434288 - AluJo SINE Alu -23 289 1 2121 86 9 76 chr12 35352913 35353228 -108433227 + AluSg SINE Alu 1 294 -16 2381 75 0 0 chr12 35354122 35354416 -108432039 - AluY SINE Alu -17 294 1 1377 133 0 5 chr12 35354976 35355172 -108431283 + AluY SINE Alu 95 289 -22 1289 178 78 0 chr12 35355237 35355456 -108430999 + MER46A DNA MER2_type 1 236 0 2220 103 0 13 chr12 35355589 35355891 -108430564 - AluSx SINE Alu -14 298 1 402 264 0 69 chr12 35356951 35357110 -108429345 + L2 LINE L2 2912 3059 -213 486 253 157 15 chr12 35357133 35357331 -108429124 + L1ME LINE L1 5545 5770 -351 24 32 0 0 chr12 35357515 35357546 -108428909 + AT_rich Low_complexity Low_complexity 1 31 0 2437 74 6 6 chr12 35357572 35357884 -108428571 + AluSx SINE Alu 1 312 0 335 332 81 27 chr12 35358258 35358577 -108427878 - L2 LINE L2 -461 2853 2470 2081 89 0 0 chr12 35358577 35358846 -108427609 + L1PA5 LINE L1 5886 6154 0 335 332 81 27 chr12 35358846 35358881 -108427574 - L2 LINE L2 -844 2470 2438 540 226 85 34 chr12 35358966 35359143 -108427312 - MIR SINE MIR -65 197 12 235 319 0 42 chr12 35359195 35359222 -108427233 - L2 LINE L2 -1292 2022 1995 1930 163 0 7 chr12 35359222 35359522 -108426933 + AluJo SINE Alu 1 298 -14 235 319 0 42 chr12 35359522 35359613 -108426842 - L2 LINE L2 -1319 1995 1909 1421 183 27 24 chr12 35360028 35360165 -108426290 + AluJo SINE Alu 3 138 -174 530 51 13 0 chr12 35360165 35360243 -108426212 + (TA)n Simple_repeat Simple_repeat 1 79 0 1421 183 27 24 chr12 35360243 35360400 -108426055 + AluJo SINE Alu 138 298 -14 292 303 61 13 chr12 35360656 35360970 -108425485 + L1M3 LINE L1 5107 5431 -743 22 35 0 0 chr12 35361495 35361524 -108424931 + AT_rich Low_complexity Low_complexity 1 29 0 1859 168 3 0 chr12 35361533 35361836 -108424619 - AluSx SINE Alu -8 304 1 402 294 46 30 chr12 35361875 35362072 -108424383 + L1ME LINE L1 5408 5607 -514 3169 256 96 41 chr12 35362100 35362649 -108423806 + L1MEc LINE L1 85 602 -5615 1252 70 25 0 chr12 35362649 35362806 -108423649 + L1PA8 LINE L1 5999 6159 -13 3169 256 96 41 chr12 35362806 35362830 -108423625 + L1MEc LINE L1 602 623 -5594 2257 97 0 0 chr12 35362830 35363136 -108423319 + AluSg SINE Alu 3 308 0 3169 256 96 41 chr12 35363136 35363850 -108422605 + L1MEc LINE L1 623 1296 -4921 473 103 0 0 chr12 35363951 35364019 -108422436 + AluSp/q SINE Alu 238 305 -8 1980 148 7 0 chr12 35364562 35364860 -108421595 - AluJb SINE Alu -12 300 1 2206 114 0 7 chr12 35364985 35365292 -108421163 - AluSx SINE Alu -7 305 1 1718 166 3 27 chr12 35366215 35366510 -108419945 - AluJo SINE Alu -24 288 1 197 343 0 14 chr12 35366510 35366580 -108419875 - L2 LINE L2 -10 3303 3235 509 299 192 37 chr12 35367123 35367778 -108418677 - L2 LINE L2 -742 2572 1816 1876 163 0 3 chr12 35367992 35368292 -108418163 - AluJb SINE Alu -13 299 1 2166 113 3 0 chr12 35370713 35371004 -108415451 + AluSq SINE Alu 1 292 -21 2197 109 0 7 chr12 35371009 35371311 -108415144 + AluSq SINE Alu 1 300 -13 2422 65 3 3 chr12 35371583 35371891 -108414564 + AluSg SINE Alu 1 308 -2 604 143 0 31 chr12 35372886 35372984 -108413471 - FLAM_A SINE Alu -8 134 40 934 62 0 0 chr12 35373128 35373240 -108413215 - AluSp/q SINE Alu -24 289 178 1659 183 116 45 chr12 35375313 35375636 -108410819 + MER39 LTR ERV1 1 299 -408 2156 128 0 0 chr12 35375636 35375932 -108410523 + AluSx SINE Alu 2 297 -15 1659 183 116 45 chr12 35375932 35376104 -108410351 + MER39 LTR ERV1 299 707 0 1618 120 42 94 chr12 35376835 35377143 -108409312 + AluSx SINE Alu 1 292 -20 1756 168 0 29 chr12 35378173 35378482 -108407973 + AluJb SINE Alu 1 300 -12 1786 151 7 0 chr12 35378925 35379203 -108407252 - AluSx SINE Alu -20 292 13 23 0 0 0 chr12 35429526 35429549 -108356906 + AT_rich Low_complexity Low_complexity 1 23 0 2129 129 3 0 chr12 35429660 35429955 -108356500 + AluSx SINE Alu 1 296 -16 473 247 98 35 chr12 35430023 35430223 -108356232 + MIR SINE MIR 3 214 -48 1056 296 84 52 chr12 35430224 35430894 -108355561 + MER21B LTR ERV1 24 714 -149 312 217 14 0 chr12 35430895 35430964 -108355491 + MIR SINE MIR 191 260 -2 203 359 0 0 chr12 35431079 35431143 -108355312 - MIR SINE MIR -105 103 40 238 216 40 14 chr12 35431652 35431726 -108354729 + MLT1K LTR MaLR 509 584 -4 214 204 0 20 chr12 35432535 35432584 -108353871 + CT-rich Low_complexity Low_complexity 2 49 0 5795 115 29 9 chr12 35432752 35433380 -108353075 - L1PBa LINE L1 -4115 2748 2089 2278 124 7 0 chr12 35433380 35433686 -108352769 - AluSg SINE Alu -2 308 1 5795 115 29 9 chr12 35433686 35434095 -108352360 - L1PBa LINE L1 -4774 2089 1690 4328 119 178 79 chr12 35434097 35435511 -108350944 - pTR5 LTR ERV1 -11 2427 743 1677 209 66 2 chr12 35435511 35436356 -108350099 - L1PBa LINE L1 -5169 1694 652 468 227 81 32 chr12 35436353 35436538 -108349917 - L1PBa LINE L1 -6664 199 6 * 25 90 0 0 chr12 35437366 35437433 -108349022 + AT_rich Low_complexity Low_complexity 1 67 0 391 291 119 15 chr12 35437644 35437778 -108348677 - MIR SINE MIR -112 150 3 26 0 0 0 chr12 35438472 35438498 -108347957 + AT_rich Low_complexity Low_complexity 1 26 0 2008 222 12 37 chr12 35439526 35440044 -108346411 - MLT1D LTR MaLR 0 505 1 768 236 18 71 chr12 35440044 35440324 -108346131 - MLT1D-int LTR MaLR 0 1371 1107 385 205 12 0 chr12 35440397 35440480 -108345975 - MLT1D-int LTR MaLR -1270 101 18 1364 224 147 19 chr12 35440507 35441046 -108345409 - L1ME2 LINE L1 -174 5990 5383 438 299 65 18 chr12 35441064 35441405 -108345050 - L1MDa LINE L1 -4796 1419 1063 2065 139 7 0 chr12 35441437 35441740 -108344715 - AluSx SINE Alu -5 307 3 687 288 130 38 chr12 35441764 35442587 -108343868 - L1MDa LINE L1 -5453 943 45 629 263 95 26 chr12 35442747 35442979 -108343476 - MIR SINE MIR -13 249 2 2235 130 0 23 chr12 35443627 35443972 -108342483 - MER1B DNA MER1_type 0 337 1 392 301 81 0 chr12 35444935 35445071 -108341384 + MIR SINE MIR 72 218 -44 772 273 64 16 chr12 35445842 35446091 -108340364 - MIR SINE MIR 0 262 2 210 331 39 23 chr12 35446662 35446792 -108339663 + L2 LINE L2 1775 1906 -1408 183 269 231 9 chr12 35447589 35447697 -108338758 - L2 LINE L2 0 3313 3182 1581 124 0 0 chr12 35447991 35448200 -108338255 + AluSx SINE Alu 1 209 -103 2280 137 86 2 chr12 35448270 35448665 -108337790 + MSTA LTR MaLR 1 428 0 256 324 0 14 chr12 35449461 35449535 -108336920 + L2 LINE L2 3198 3270 -2 397 169 13 26 chr12 35450151 35450228 -108336227 + L2 LINE L2 3225 3300 -13 225 208 0 125 chr12 35451092 35451164 -108335291 - MIR SINE MIR -32 230 168 701 192 0 0 chr12 35451167 35451297 -108335158 + MSTC LTR MaLR 251 380 -48 811 287 46 8 chr12 35451322 35451559 -108334896 - MIR SINE MIR 0 262 17 366 297 70 79 chr12 35452354 35452684 -108333771 + L1M2 LINE L1 669 995 -5854 25 0 0 0 chr12 35453311 35453336 -108333119 + AT_rich Low_complexity Low_complexity 1 25 0 743 318 139 3 chr12 35453864 35454188 -108332267 + L2 LINE L2 2941 3308 -5 1879 128 42 33 chr12 35454509 35454774 -108331681 - MER1B DNA MER1_type -2373 339 69 9040 38 2 2 chr12 35454774 35455845 -108330610 + MER11C LTR ERVK 1 1071 0 1879 128 42 33 chr12 35455845 35455915 -108330540 - MER1B DNA MER1_type -2643 69 1 23 54 0 0 chr12 35456660 35456697 -108329758 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr12 35457590 35457614 -108328841 + AT_rich Low_complexity Low_complexity 1 24 0 2312 88 0 0 chr12 35457701 35457996 -108328459 - AluY SINE Alu -16 295 1 2025 103 4 4 chr12 35458003 35458275 -108328180 - AluSp SINE Alu -15 298 27 233 236 87 63 chr12 35460271 35460398 -108326057 + L1MEd LINE L1 89 218 -5987 4282 202 45 28 chr12 35460744 35461835 -108324620 + L1MC3 LINE L1 6677 7785 0 330 256 62 6 chr12 35461840 35462016 -108324439 + L1MEd LINE L1 1304 1489 -4907 325 355 47 0 chr12 35462053 35462225 -108324230 + L1M4 LINE L1 3684 3863 -2283 1632 154 12 77 chr12 35462225 35462549 -108323906 - AluSg SINE Alu -7 303 1 565 291 13 0 chr12 35462678 35462829 -108323626 + L1M2 LINE L1 331 483 -6366 9170 215 32 18 chr12 35463107 35466380 -108320075 + L1M2 LINE L1 710 4021 -2827 2448 193 18 2 chr12 35466393 35466900 -108319555 + L1M2 LINE L1 4410 4924 -1924 647 128 69 0 chr12 35466900 35467002 -108319453 - AluSc SINE Alu -13 296 188 3605 69 13 64 chr12 35467037 35467585 -108318870 - L1PA7 LINE L1 -13 6141 5622 454 97 3 0 chr12 35467585 35467658 -108318797 + L1P4 LINE L1 5658 5732 -422 * 963 76 62 0 chr12 35467657 35467802 -108318653 + L1PBa LINE L1 2187 2340 -4523 239 146 0 0 chr12 35467951 35467999 -108318456 - L1MB3 LINE L1 -7 6176 6129 416 303 123 0 chr12 35468019 35468174 -108318281 - L3 LINE CR1 -72 1505 1332 2096 142 6 12 chr12 35468408 35468753 -108317702 + MER2 DNA MER2_type 1 343 -1 364 300 57 21 chr12 35468858 35468998 -108317457 + L3 LINE CR1 579 723 -854 734 156 78 7 chr12 35469361 35469515 -108316940 - MER96B DNA MER1_type? -252 165 1 832 310 142 2 chr12 35469573 35469967 -108316488 + L3 LINE CR1 787 1235 -342 188 356 0 23 chr12 35470029 35470116 -108316339 + L3 LINE CR1 1492 1576 -1 1978 168 0 0 chr12 35470351 35470654 -108315801 - AluSx SINE Alu -9 303 1 1512 191 41 31 chr12 35471046 35471340 -108315115 - AluJb SINE Alu -15 297 1 710 331 105 23 chr12 35471647 35471965 -108314490 - L2 LINE L2 0 3313 2948 2223 218 55 2 chr12 35471965 35472478 -108313977 + MLT1F LTR MaLR 1 540 -2 710 331 105 23 chr12 35472478 35472597 -108313858 - L2 LINE L2 -365 2948 2840 2071 138 0 0 chr12 35472763 35473053 -108313402 + AluSx SINE Alu 4 293 -19 2290 76 34 3 chr12 35473322 35473613 -108312842 - AluSp SINE Alu -13 300 1 1092 196 53 65 chr12 35474768 35474988 -108311467 + Charlie1a DNA MER1_type 1 217 -2544 2084 113 10 14 chr12 35474988 35475279 -108311176 - AluSx SINE Alu -22 290 1 1092 196 53 65 chr12 35475279 35475379 -108311076 + Charlie1a DNA MER1_type 217 317 -1138 1961 157 0 3 chr12 35475831 35476117 -108310338 + AluSx SINE Alu 8 292 -20 608 253 26 32 chr12 35477062 35477151 -108309304 + MIR SINE MIR 15 103 -159 2201 149 37 6 chr12 35477151 35477499 -108308956 - MER46B DNA MER2_type 0 236 3 608 253 26 32 chr12 35477499 35477599 -108308856 + MIR SINE MIR 103 203 -59 188 171 0 0 chr12 35478425 35478466 -108307989 - L2 LINE L2 0 3313 3273 2246 105 170 14 chr12 35478794 35478971 -108307484 - MSTA LTR MaLR 0 428 280 477 50 0 0 chr12 35478971 35479031 -108307424 + (GA)n Simple_repeat Simple_repeat 2 61 0 2246 105 170 14 chr12 35479031 35479223 -108307232 - MSTA LTR MaLR -148 280 1 2707 134 30 58 chr12 35479731 35480231 -108306224 + LTR19A LTR ERV1 1 486 0 2609 179 15 58 chr12 35480263 35480810 -108305645 + LTR9 LTR ERV1 1 523 -89 1110 109 6 0 chr12 35480814 35480970 -108305485 - AluSg/x SINE Alu 0 312 156 381 243 19 19 chr12 35483755 35483858 -108302597 + LTR33A LTR ERVL 418 520 -3 * 819 236 38 90 chr12 35483857 35484397 -108302058 - MER67D LTR ERV1 0 543 59 1945 126 39 11 chr12 35484710 35484995 -108301460 - AluSx SINE Alu -19 293 1 194 146 0 24 chr12 35486449 35486490 -108299965 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 719 275 86 34 chr12 35486915 35487037 -108299418 - LTR16C LTR ERVL 0 491 377 1905 188 65 14 chr12 35487037 35487453 -108299002 - LTR23 LTR ERV1 0 437 1 719 275 86 34 chr12 35487453 35487654 -108298801 - LTR16C LTR ERVL -114 377 151 34 24 0 0 chr12 35488437 35488478 -108297977 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr12 35489619 35489640 -108296815 + AT_rich Low_complexity Low_complexity 1 21 0 224 315 11 11 chr12 35490471 35490560 -108295895 - MIR SINE MIR -11 251 163 27 0 0 0 chr12 35492379 35492406 -108294049 + AT_rich Low_complexity Low_complexity 1 27 0 613 274 82 35 chr12 35492406 35492661 -108293794 - L2 LINE L2 -43 3270 3004 234 246 112 82 chr12 35492764 35492898 -108293557 - MIR3 SINE MIR -68 140 3 4310 28 0 0 chr12 35494586 35495059 -108291396 + L1PA3 LINE L1 5683 6155 0 1832 115 0 0 chr12 35495357 35495601 -108290854 + L1PB1 LINE L1 5907 6150 -1 960 244 105 55 chr12 35496135 35496328 -108290127 + MLT1H LTR MaLR 1 183 -366 1080 139 51 74 chr12 35496328 35496544 -108289911 - MER20 DNA MER1_type -4 215 5 960 244 105 55 chr12 35496544 35496678 -108289777 + MLT1H LTR MaLR 183 387 -162 983 254 34 28 chr12 35496954 35497348 -108289107 - L1M4 LINE L1 -1467 4679 4280 2232 109 0 3 chr12 35497348 35497650 -108288805 - AluSc SINE Alu -8 301 1 983 254 34 28 chr12 35497650 35497727 -108288728 - L1M4 LINE L1 -1866 4280 4205 5995 176 49 21 chr12 35498090 35498766 -108287689 - L1MA5 LINE L1 0 6300 5644 2229 99 0 16 chr12 35498766 35499070 -108287385 - AluSx SINE Alu -13 299 1 5995 176 49 21 chr12 35499070 35499251 -108287204 - L1MA5 LINE L1 -656 5644 5470 2230 110 10 0 chr12 35499251 35499550 -108286905 - AluSx SINE Alu -10 302 1 5995 176 49 21 chr12 35499550 35500855 -108285600 - L1MA5 LINE L1 -830 5470 4066 693 256 22 33 chr12 35500901 35501081 -108285374 + MER5B DNA MER1_type 1 178 0 2184 147 139 16 chr12 35502420 35502801 -108283654 - MSTA LTR MaLR 0 428 1 580 274 12 90 chr12 35504007 35504262 -108282193 + MER102a DNA MER1_type 92 326 -4 253 250 26 26 chr12 35504526 35504602 -108281853 + CT-rich Low_complexity Low_complexity 2 77 0 2900 158 25 25 chr12 35504764 35505326 -108281129 - L1MA8 LINE L1 -1 6290 5729 5160 158 12 11 chr12 35505493 35506402 -108280053 - L1MA8 LINE L1 -1419 4727 3818 741 308 87 12 chr12 35506550 35506725 -108279730 - L2 LINE L2 -589 2725 2564 2287 141 11 3 chr12 35506725 35507073 -108279382 + L1PA16 LINE L1 5812 6162 -4 741 308 87 12 chr12 35507073 35507300 -108279155 - L2 LINE L2 -750 2564 2293 956 202 6 0 chr12 35507306 35507474 -108278981 - MER45A DNA AcHobo 0 178 10 342 288 0 0 chr12 35507490 35507570 -108278885 - L2 LINE L2 -1031 2283 2204 4265 140 13 3 chr12 35507828 35508456 -108277999 + MER41B LTR ERV1 2 635 0 14407 29 2 2 chr12 35508791 35511189 -108275266 + L1PA4 LINE L1 3757 6155 0 299 303 148 49 chr12 35511428 35511692 -108274763 - L2 LINE L2 -411 2903 2614 2510 107 30 35 chr12 35511710 35512076 -108274379 + THE1B LTR MaLR 1 364 0 12367 98 5 4 chr12 35512076 35513655 -108272800 + THE1B-int LTR MaLR 1 1580 0 2516 107 33 33 chr12 35513655 35514019 -108272436 + THE1B LTR MaLR 1 364 0 5151 159 36 8 chr12 35514153 35514956 -108271499 + LTR1B LTR ERV1 1 826 0 3430 166 54 51 chr12 35515242 35515966 -108270489 + LTR8A LTR ERV1 1 726 -1 27 0 0 0 chr12 35516222 35516249 -108270206 + AT_rich Low_complexity Low_complexity 1 27 0 1426 217 40 7 chr12 35516319 35516596 -108269859 - MER61D LTR ERV1 0 501 216 663 218 35 23 chr12 35516667 35516841 -108269614 - LTR28 LTR ERV1 -844 176 1 830 179 6 0 chr12 35517084 35517252 -108269203 + CT-rich Low_complexity Low_complexity 4 172 0 6630 83 11 10 chr12 35517690 35519179 -108267276 - SVA Other Other -839 1381 8 22 35 0 0 chr12 35519287 35519316 -108267139 + AT_rich Low_complexity Low_complexity 1 29 0 210 318 95 34 chr12 35519620 35519768 -108266687 + MIR3 SINE MIR 43 199 -9 2540 145 51 10 chr12 35519989 35520404 -108266051 + MSTB1 LTR MaLR 1 432 0 529 259 112 39 chr12 35520598 35520919 -108265536 + MLT1J2 LTR MaLR 92 392 -17 1012 218 22 29 chr12 35520992 35521327 -108265128 - L1ME LINE L1 -651 5515 5186 270 92 0 154 chr12 35521423 35521440 -108265015 - L1ME LINE L1 -963 5183 5165 3287 158 26 89 chr12 35521440 35522182 -108264273 + LTR34 LTR ERV1 1 695 -4 270 92 0 154 chr12 35522182 35522229 -108264226 - L1ME LINE L1 -981 5165 5129 393 173 0 12 chr12 35522298 35522379 -108264076 + L1MA10 LINE L1 6254 6333 -1 321 255 128 10 chr12 35523240 35523342 -108263113 - MIR SINE MIR -78 184 71 730 246 82 100 chr12 35523504 35523894 -108262561 + MLT1J2 LTR MaLR 67 449 -1 361 292 105 69 chr12 35524290 35524653 -108261802 + L3b LINE CR1 1107 1482 -101 1869 135 39 4 chr12 35526200 35526481 -108259974 - AluSx SINE Alu -21 291 1 1997 179 61 5 chr12 35526486 35526877 -108259578 + Charlie1 DNA MER1_type 1636 2048 -713 330 204 0 0 chr12 35526877 35526931 -108259524 - MIR SINE MIR -190 72 19 908 110 61 49 chr12 35527455 35527619 -108258836 + MSTB1 LTR MaLR 1 166 -266 300 331 0 8 chr12 35527687 35527814 -108258641 - L1MC4a LINE L1 -1898 5910 5785 2436 73 0 0 chr12 35527847 35528147 -108258308 - AluY SINE Alu -11 300 1 439 242 86 19 chr12 35529088 35529344 -108257111 + L1PBa LINE L1 2190 2462 -4401 3137 84 23 7 chr12 35529344 35529783 -108256672 + L1PA11 LINE L1 5729 6174 0 4353 117 33 37 chr12 35529783 35530592 -108255863 + Tigger1 DNA MER2_type 1467 2272 -146 13278 180 36 6 chr12 35530607 35535977 -108250478 - L1PB1 LINE L1 -3 6864 1339 5479 91 110 89 chr12 35536025 35537521 -108248934 + pTR5 LTR ERV1 743 2433 -5 354 62 0 0 chr12 35537705 35537753 -108248702 - L1PB1 LINE L1 -5723 1140 1093 4626 184 51 6 chr12 35537754 35538743 -108247712 - L1PB1 LINE L1 -5815 1048 16 927 170 0 0 chr12 35538791 35538950 -108247505 + Tigger1 DNA MER2_type 2260 2418 0 304 271 107 0 chr12 35538975 35539152 -108247303 - L1M4c LINE L1 -4764 1620 1425 3340 70 2 0 chr12 35539174 35539604 -108246851 - L1PA10 LINE L1 -9 6159 5729 1541 110 22 0 chr12 35540474 35540701 -108245754 - L1PA15 LINE L1 -9 6156 5925 2002 128 7 0 chr12 35540729 35541038 -108245417 + AluSx SINE Alu 1 311 0 846 160 39 6 chr12 35541289 35541470 -108244985 - L1MA8 LINE L1 -2 6289 6103 2122 126 0 3 chr12 35541470 35541756 -108244699 + AluSx SINE Alu 1 285 -27 264 30 0 0 chr12 35541761 35541794 -108244661 + (TA)n Simple_repeat Simple_repeat 1 33 0 318 298 23 41 chr12 35541948 35542119 -108244336 + L1ME4a LINE L1 5749 5916 -205 25 0 0 0 chr12 35542253 35542278 -108244177 + AT_rich Low_complexity Low_complexity 1 25 0 180 345 36 12 chr12 35542861 35542945 -108243510 - MIR SINE MIR -140 122 37 234 174 0 22 chr12 35543648 35543694 -108242761 - L3 LINE CR1 -9 1568 1524 1560 203 31 17 chr12 35543937 35544297 -108242158 + MLT1A1 LTR MaLR 1 365 0 1941 154 3 22 chr12 35544435 35544753 -108241702 + AluSx SINE Alu 1 312 0 3004 183 17 12 chr12 35544818 35545403 -108241052 + Tigger7 DNA MER2_type 1 588 -1899 722 202 125 0 chr12 35546009 35546177 -108240278 + MER5A DNA MER1_type 1 189 0 694 315 97 39 chr12 35546178 35546591 -108239864 + LTR16A LTR ERVL 1 437 -13 22 0 0 0 chr12 35547257 35547279 -108239176 + AT_rich Low_complexity Low_complexity 1 22 0 1775 79 117 0 chr12 35547561 35547827 -108238628 - L1PA13 LINE L1 -4 6159 5863 239 122 0 24 chr12 35548041 35548082 -108238373 - L2 LINE L2 -19 3253 3214 21 36 0 0 chr12 35548258 35548286 -108238169 + AT_rich Low_complexity Low_complexity 1 28 0 2415 129 60 21 chr12 35548750 35549183 -108237272 - LTR7 LTR ERV1 0 450 1 10336 93 2 3 chr12 35549183 35550689 -108235766 - HERVH LTR ERV1 0 7713 6209 2985 128 14 9 chr12 35550682 35551320 -108235135 - HERVH LTR ERV1 -6767 946 1 * 2315 126 57 30 chr12 35551322 35551758 -108234697 - LTR7 LTR ERV1 -2 448 1 23 33 0 0 chr12 35551762 35551792 -108234663 + AT_rich Low_complexity Low_complexity 1 30 0 357 218 2 16 chr12 35552234 35552325 -108234130 + MLT1J2 LTR MaLR 72 160 -249 240 276 143 0 chr12 35552384 35552489 -108233966 + MLT1J2 LTR MaLR 256 375 -75 194 325 117 42 chr12 35552881 35553001 -108233454 - L2 LINE L2 -6 3266 3138 431 264 25 0 chr12 35553743 35553864 -108232591 + MER94 DNA DNA 7 130 -4 2229 137 7 41 chr12 35554420 35554836 -108231619 - L1MA6 LINE L1 -4 6296 5895 2047 124 40 27 chr12 35556097 35556467 -108229988 - THE1C LTR MaLR 0 375 1 377 283 103 14 chr12 35556512 35556657 -108229798 - MIR SINE MIR 0 262 105 215 217 83 0 chr12 35557685 35557745 -108228710 + L2 LINE L2 3208 3272 0 262 324 65 0 chr12 35557945 35558053 -108228402 - MIR SINE MIR -75 187 73 5478 119 35 5 chr12 35558229 35558905 -108227550 + L1PB1 LINE L1 5087 5807 -344 192 77 0 0 chr12 35558905 35558931 -108227524 + (TA)n Simple_repeat Simple_repeat 2 27 0 5478 119 35 5 chr12 35558931 35559279 -108227176 + L1PB1 LINE L1 5807 6143 -8 35 54 0 0 chr12 35559395 35559451 -108227004 + AT_rich Low_complexity Low_complexity 1 56 0 381 287 57 8 chr12 35559475 35559597 -108226858 - MIR SINE MIR -71 191 64 407 200 11 22 chr12 35560017 35560107 -108226348 + MER21B LTR ERV1 1 89 -774 2057 243 104 20 chr12 35560133 35560795 -108225660 + MER21B LTR ERV1 21 738 -125 2183 141 0 0 chr12 35561498 35561810 -108224645 + AluSx SINE Alu 1 312 0 41209 51 2 5 chr12 35563257 35569432 -108217023 - L1PA6 LINE L1 -2 6152 2 9056 89 5 0 chr12 35569432 35570773 -108215682 + L1P LINE L1 1832 3178 -2968 229 287 195 0 chr12 35570815 35570902 -108215553 + L2 LINE L2 3121 3224 -48 21 36 0 0 chr12 35571965 35571993 -108214462 + AT_rich Low_complexity Low_complexity 1 28 0 36 40 0 0 chr12 35572445 35572495 -108213960 + AT_rich Low_complexity Low_complexity 1 50 0 319 305 80 32 chr12 35572790 35573039 -108213416 - MLT1K LTR MaLR 0 588 328 1083 190 55 3 chr12 35573198 35573487 -108212968 - MLT1B LTR MaLR 0 390 8 2126 120 7 0 chr12 35573809 35574101 -108212354 - AluSq SINE Alu -19 294 1 306 286 187 6 chr12 35574636 35574818 -108211637 + L1M4 LINE L1 2721 2935 -3211 482 241 26 26 chr12 35576409 35576525 -108209930 + L2 LINE L2 3197 3312 -1 435 351 78 38 chr12 35576580 35576950 -108209505 + L2 LINE L2 2593 2977 -337 236 246 0 0 chr12 35577742 35577799 -108208656 + MLT1L LTR MaLR 16 72 -543 2062 150 0 3 chr12 35579524 35579837 -108206618 - AluSq SINE Alu -1 312 1 915 277 153 22 chr12 35580501 35580779 -108205676 + L1MC4 LINE L1 7297 7537 -505 525 32 0 0 chr12 35580779 35580842 -108205613 + (CCAA)n Simple_repeat Simple_repeat 2 64 0 915 277 153 22 chr12 35580842 35580933 -108205522 + L1MC4 LINE L1 7537 7615 -427 403 84 0 28 chr12 35580933 35581004 -108205451 + (TG)n Simple_repeat Simple_repeat 2 70 0 915 277 153 22 chr12 35581004 35581279 -108205176 + L1MC4 LINE L1 7615 8027 -15 3999 222 26 1 chr12 35581386 35582345 -108204110 - L1 LINE L1 -3048 4517 3535 2362 128 27 5 chr12 35582347 35582753 -108203702 - L1 LINE L1 -4332 3233 2819 3173 92 20 2 chr12 35582753 35583209 -108203246 + L1PA13 LINE L1 5696 6159 -4 337 214 95 24 chr12 35583377 35583503 -108202952 + L1ME LINE L1 5636 5770 -351 699 254 75 44 chr12 35584155 35584407 -108202048 - MIR SINE MIR -1 261 2 246 306 97 45 chr12 35584783 35584917 -108201538 - L2 LINE L2 -4 3268 3128 354 353 31 39 chr12 35585090 35585348 -108201107 - L2 LINE L2 -212 3060 2805 21 0 0 0 chr12 35585623 35585644 -108200811 + AT_rich Low_complexity Low_complexity 1 21 0 198 266 65 57 chr12 35586745 35586869 -108199586 - L2 LINE L2 -344 2928 2804 258 319 0 0 chr12 35587536 35587605 -108198850 - L2 LINE L2 -218 3054 2986 333 238 35 91 chr12 35588328 35588360 -108198095 - MIR SINE MIR -10 252 220 1038 157 55 111 chr12 35588360 35588703 -108197752 + MER33 DNA MER1_type 1 324 0 333 238 35 91 chr12 35588703 35588813 -108197642 - MIR SINE MIR -42 220 118 2286 90 3 0 chr12 35591274 35591562 -108194893 + AluSg SINE Alu 1 289 -21 193 370 160 8 chr12 35591583 35591702 -108194753 + L2 LINE L2 3136 3272 0 321 333 48 61 chr12 35592518 35592897 -108193558 - L2 LINE L2 -3 3310 2937 2509 84 0 0 chr12 35594106 35594416 -108192039 - AluSx SINE Alu -2 310 1 26 30 0 0 chr12 35594513 35594546 -108191909 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr12 35594595 35594634 -108191821 + AT_rich Low_complexity Low_complexity 1 39 0 2570 125 3 3 chr12 35594634 35595019 -108191436 - LTR9B LTR ERV1 -84 560 176 1668 167 32 3 chr12 35596077 35596359 -108190096 - AluSx SINE Alu -22 290 1 261 328 0 0 chr12 35598015 35598082 -108188373 - MIR SINE MIR -176 86 20 184 286 12 95 chr12 35598085 35598169 -108188286 - MIR SINE MIR -93 115 39 26 0 0 0 chr12 35598245 35598271 -108188184 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr12 35598605 35598640 -108187815 + AT_rich Low_complexity Low_complexity 1 35 0 422 314 101 29 chr12 35598644 35599020 -108187435 + L1MC4a LINE L1 5513 5915 -206 1648 132 0 0 chr12 35599348 35599575 -108186880 - AluJo SINE Alu -15 297 71 388 253 11 0 chr12 35599613 35599708 -108186747 - L1MC4 LINE L1 -600 7442 7347 * 652 229 221 12 chr12 35599704 35599953 -108186502 + L1MC4 LINE L1 7453 7753 -289 603 284 85 49 chr12 35599970 35600417 -108186038 - HAL1b LINE L1 -834 514 52 1842 178 37 8 chr12 35602095 35602450 -108184005 - MLT1A1 LTR MaLR 0 365 1 42861 51 0 1 chr12 35602742 35608887 -108177568 - L1PA4 LINE L1 -5 6150 13 956 106 47 0 chr12 35608885 35609055 -108177400 - L1PA8A LINE L1 -700 5431 5254 * 547 230 138 13 chr12 35609461 35609613 -108176842 - MIR SINE MIR -78 184 14 572 307 80 29 chr12 35610088 35610326 -108176129 + MIR SINE MIR 13 262 0 24 32 0 0 chr12 35610767 35610798 -108175657 + AT_rich Low_complexity Low_complexity 1 31 0 1940 259 59 54 chr12 35610954 35612059 -108174396 + L1ME3A LINE L1 4888 5986 -176 3148 127 51 6 chr12 35612059 35612548 -108173907 - MER9 LTR ERVK 0 511 1 1940 259 59 54 chr12 35612548 35612608 -108173847 + L1ME3A LINE L1 5986 6044 -118 3196 138 10 6 chr12 35612608 35613117 -108173338 - MER9 LTR ERVK 0 511 1 1940 259 59 54 chr12 35613117 35613217 -108173238 + L1ME3A LINE L1 6044 6125 -37 4241 85 21 11 chr12 35613882 35614903 -108171552 + MER11A LTR ERVK 1 1266 0 545 329 74 7 chr12 35615895 35616137 -108170318 + MIR SINE MIR 2 257 -5 375 301 106 20 chr12 35616132 35616331 -108170124 + MIR SINE MIR 42 257 -5 * 370 333 46 0 chr12 35616495 35616648 -108169807 + MIR SINE MIR 77 236 -26 950 18 0 0 chr12 35616686 35616796 -108169659 - L1PA3 LINE L1 0 6155 6046 2474 164 19 19 chr12 35617740 35617976 -108168479 + MSTB LTR MaLR 1 239 -187 1914 159 41 14 chr12 35617976 35618340 -108168115 + THE1C LTR MaLR 1 374 -1 2474 164 19 19 chr12 35618340 35618529 -108167926 + MSTB LTR MaLR 238 426 0 1952 87 0 8 chr12 35619091 35619345 -108167110 + AluSx SINE Alu 61 312 0 197 299 126 23 chr12 35619481 35619568 -108166887 + L2 LINE L2 3161 3256 -16 1570 226 7 0 chr12 35619579 35619924 -108166531 + AluJb SINE Alu 1 347 0 189 0 0 0 chr12 35619924 35619945 -108166510 + (GGGA)n Simple_repeat Simple_repeat 1 21 0 285 231 8 116 chr12 35620036 35620157 -108166298 - MER20 DNA MER1_type 0 219 112 292 280 115 27 chr12 35620355 35620514 -108165941 + MIR SINE MIR 21 188 -70 358 276 21 97 chr12 35621494 35621639 -108164816 - MER5B DNA MER1_type -24 154 21 325 260 133 44 chr12 35622244 35622425 -108164030 - L2 LINE L2 0 3272 3076 1700 185 0 7 chr12 35622925 35623212 -108163243 + AluSx SINE Alu 1 285 -27 189 268 118 39 chr12 35624022 35624149 -108162306 - L2 LINE L2 -947 2367 2231 29264 100 13 37 chr12 35624655 35627275 -108159180 + L1PA7 LINE L1 706 3386 -3083 255 31 0 0 chr12 35627275 35627307 -108159148 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 29264 100 13 37 chr12 35627307 35627437 -108159018 + L1PA7 LINE L1 3386 3518 -2951 387 0 0 0 chr12 35627437 35627480 -108158975 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 29264 100 13 37 chr12 35627480 35627492 -108158963 + L1PA7 LINE L1 3518 3529 -2940 4786 32 0 0 chr12 35627492 35628056 -108158399 - L1PA3 LINE L1 -3 6152 5589 29264 100 13 37 chr12 35628056 35631190 -108155265 + L1PA7 LINE L1 3529 6451 -18 549 246 0 0 chr12 35631211 35631337 -108155118 + L1M4 LINE L1 3445 3570 -2576 21 0 0 0 chr12 35631364 35631385 -108155070 + AT_rich Low_complexity Low_complexity 1 21 0 1023 183 11 0 chr12 35631878 35632053 -108154402 - AluJb SINE Alu -7 305 129 409 235 17 59 chr12 35632462 35632581 -108153874 - L2 LINE L2 -7 3306 3193 345 274 8 34 chr12 35633550 35633667 -108152788 - HsTC2 DNA Tc2 -1781 117 4 298 316 10 10 chr12 35633974 35634072 -108152383 - LTR67 LTR ERVL -368 189 92 325 307 79 0 chr12 35635039 35635166 -108151289 + MIR SINE MIR 45 181 -81 815 233 62 0 chr12 35635618 35635811 -108150644 + MIR SINE MIR 30 234 -28 1876 164 0 3 chr12 35636523 35636815 -108149640 + AluJb SINE Alu 1 291 -21 475 317 112 41 chr12 35636818 35637256 -108149199 - MLT1K LTR MaLR -3 585 117 230 294 0 0 chr12 35637460 35637545 -108148910 - L1MC4 LINE L1 -1340 6702 6618 400 329 46 0 chr12 35639220 35639436 -108147019 - MER112 DNA MER1_type -32 228 3 483 337 36 14 chr12 35640063 35640284 -108146171 - MIR SINE MIR -4 258 35 1078 171 0 0 chr12 35640284 35640448 -108146007 - AluJo/FRAM SINE Alu -15 297 134 2242 102 0 34 chr12 35640450 35640772 -108145683 - AluY SINE Alu 0 311 1 216 97 0 0 chr12 35640800 35640831 -108145624 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2088 89 31 7 chr12 35641383 35641674 -108144781 - AluSp SINE Alu -15 298 1 597 338 77 54 chr12 35641689 35642254 -108144201 - L2 LINE L2 -282 3031 2450 1395 66 5 30 chr12 35642384 35642582 -108143873 + AluY SINE Alu 104 296 -15 328 350 57 16 chr12 35642584 35642830 -108143625 - L1MCb LINE L1 -1404 5160 4905 21 57 0 0 chr12 35645350 35645385 -108141070 + AT_rich Low_complexity Low_complexity 1 35 0 276 207 17 0 chr12 35646350 35646408 -108140047 - MER103 DNA DNA -95 71 13 558 358 73 55 chr12 35646588 35647133 -108139322 - LTR67 LTR ERVL 0 557 3 572 332 61 16 chr12 35647149 35647462 -108138993 - MLT1L LTR MaLR -92 523 197 5616 236 54 9 chr12 35647688 35649388 -108137067 - L1MCb LINE L1 -1916 4648 2872 683 176 0 0 chr12 35649392 35649500 -108136955 - FLAM_C SINE Alu -35 108 1 4169 209 108 56 chr12 35649500 35649795 -108136660 - L1MCb LINE L1 -3818 2746 2468 1666 111 0 8 chr12 35649795 35650030 -108136425 - AluSc SINE Alu -6 303 71 5044 28 0 44 chr12 35650035 35650674 -108135781 - L1PA4 LINE L1 -8 6147 5537 534 83 0 0 chr12 35650674 35650746 -108135709 - AluSc SINE Alu -237 72 1 4169 209 108 56 chr12 35650746 35652241 -108134214 - L1MCb LINE L1 -4098 2466 777 21 36 0 0 chr12 35652251 35652279 -108134176 + AT_rich Low_complexity Low_complexity 1 28 0 861 206 33 5 chr12 35652291 35652475 -108133980 - L1MCb LINE L1 -6221 343 155 1950 193 71 106 chr12 35653261 35653965 -108132490 - MER61E LTR ERV1 -4 750 3 1836 225 113 19 chr12 35653965 35654231 -108132224 - L1MD3 LINE L1 -31 7964 7724 1946 153 0 13 chr12 35654231 35654532 -108131923 - AluSx SINE Alu -15 297 1 1836 225 113 19 chr12 35654532 35654834 -108131621 - L1MD3 LINE L1 -271 7724 7343 535 281 47 8 chr12 35656005 35656133 -108130322 - L2 LINE L2 -4 3268 3136 261 0 0 0 chr12 35656159 35656188 -108130267 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2487 182 66 71 chr12 35656188 35656884 -108129571 + LTR34 LTR ERV1 8 695 -4 613 279 60 0 chr12 35656901 35657102 -108129353 - L2 LINE L2 -174 3139 2927 539 294 172 11 chr12 35657092 35657371 -108129084 - L2 LINE L2 -529 2785 2462 * 584 60 24 0 chr12 35659005 35659088 -108127367 - L1PA7 LINE L1 0 6154 6070 707 66 38 0 chr12 35659097 35659203 -108127252 - L1P LINE L1 -789 5357 5248 234 150 0 0 chr12 35659437 35659477 -108126978 + (T)n Simple_repeat Simple_repeat 1 40 0 995 196 12 0 chr12 35660030 35660198 -108126257 + MER5A DNA MER1_type 2 171 -18 497 219 123 0 chr12 35660323 35660437 -108126018 + FLAM_C SINE Alu 1 128 -5 2369 137 5 3 chr12 35660485 35660864 -108125591 + L1PA16 LINE L1 5786 6165 -1 358 304 74 19 chr12 35661903 35662160 -108124295 + L1MEc LINE L1 1709 1979 -4417 1846 234 43 28 chr12 35662207 35662673 -108123782 + MLT1D LTR MaLR 5 477 -28 295 73 0 0 chr12 35662714 35662755 -108123700 + MLT1D LTR MaLR 465 505 0 298 218 9 9 chr12 35663048 35663158 -108123297 + L1MEc LINE L1 2126 2235 -3980 * 714 306 102 23 chr12 35663126 35663685 -108122770 + L1MEc LINE L1 2504 3106 -3109 1159 295 63 10 chr12 35663701 35664304 -108122151 + L1MEc LINE L1 3184 3818 -2397 336 268 8 16 chr12 35664302 35664323 -108122132 - L1MA4A LINE L1 0 6303 6283 * 7975 181 34 30 chr12 35664323 35665304 -108121151 - L1PB4 LINE L1 -2 6154 5178 2152 178 41 24 chr12 35665304 35665679 -108120776 + MSTB LTR MaLR 3 370 -56 2110 117 7 3 chr12 35665679 35665987 -108120468 - AluSc SINE Alu 0 309 1 2040 122 3 14 chr12 35665987 35666283 -108120172 - AluSc SINE Alu -16 293 1 2152 178 41 24 chr12 35666283 35666323 -108120132 + MSTB LTR MaLR 369 426 0 7975 181 34 30 chr12 35666323 35668021 -108118434 - L1PB4 LINE L1 -978 5178 3460 * 28423 106 14 63 chr12 35668011 35672931 -108113524 - L1PA3 LINE L1 -257 6213 1565 4893 81 136 22 chr12 35672931 35673669 -108112786 + LTR12 LTR ERV1 1 822 -4 28423 106 14 63 chr12 35673669 35674869 -108111586 - L1PA3 LINE L1 -4905 1565 308 894 197 39 0 chr12 35674869 35675047 -108111408 - MLT2B3 LTR ERVL -369 185 1 2296 225 76 42 chr12 35675052 35675436 -108111019 + L1ME2 LINE L1 5185 5554 -610 2357 85 0 3 chr12 35675436 35675730 -108110725 - AluY SINE Alu -18 293 1 2296 225 76 42 chr12 35675730 35676239 -108110216 + L1ME2 LINE L1 5554 6093 -71 1968 160 9 6 chr12 35676918 35677384 -108109071 - MER44D DNA MER2_type -1 604 2 468 261 54 9 chr12 35677596 35677707 -108108748 + FLAM_A SINE Alu 1 116 -17 26 50 0 0 chr12 35678518 35678558 -108107897 + AT_rich Low_complexity Low_complexity 1 40 0 268 287 64 0 chr12 35678875 35678969 -108107486 - MIR3 SINE MIR -8 200 101 180 0 0 0 chr12 35679819 35679839 -108106616 + (T)n Simple_repeat Simple_repeat 1 20 0 295 215 0 0 chr12 35680522 35680587 -108105868 - L1MD3 LINE L1 -8 7987 7923 21 36 0 0 chr12 35680587 35680615 -108105840 + AT_rich Low_complexity Low_complexity 1 28 0 455 233 0 9 chr12 35680619 35680735 -108105720 - L1MC4 LINE L1 -177 7865 7751 2444 76 0 3 chr12 35680774 35681076 -108105379 + AluY SINE Alu 1 301 -10 420 289 71 83 chr12 35681137 35681532 -108104923 - L1 LINE L1 -3547 2599 2210 1931 98 4 18 chr12 35681571 35681860 -108104595 - THE1C LTR MaLR -90 285 1 354 279 85 97 chr12 35681983 35682141 -108104314 - HAL1b LINE L1 -437 911 756 2068 130 3 0 chr12 35682141 35682434 -108104021 - AluSx SINE Alu -18 294 1 354 279 85 97 chr12 35682434 35682522 -108103933 - HAL1b LINE L1 -592 756 668 635 336 29 66 chr12 35682631 35683149 -108103306 - HAL1b LINE L1 -849 499 1 207 0 0 0 chr12 35683496 35683519 -108102936 + (T)n Simple_repeat Simple_repeat 1 23 0 2005 89 0 4 chr12 35684166 35684424 -108102031 - AluSq SINE Alu -16 297 41 21 0 0 0 chr12 35684583 35684604 -108101851 + AT_rich Low_complexity Low_complexity 1 21 0 226 180 45 126 chr12 35684623 35684734 -108101721 + MIR SINE MIR 96 197 -65 1817 218 46 23 chr12 35685273 35685887 -108100568 + L1M3c LINE L1 985 1612 -4529 773 261 0 5 chr12 35686050 35686245 -108100210 + L1M3c LINE L1 2565 2758 -3452 6276 108 8 6 chr12 35686245 35687241 -108099214 - L1MA3 LINE L1 0 6305 5308 3864 210 42 19 chr12 35687241 35688328 -108098127 + L1M3c LINE L1 2739 3850 -2360 2399 39 4 0 chr12 35688656 35688937 -108097518 - AluY SINE Alu -26 285 4 180 111 0 0 chr12 35689037 35689064 -108097391 + (CA)n Simple_repeat Simple_repeat 2 28 0 325 282 154 48 chr12 35689343 35689673 -108096782 - L1M4 LINE L1 -759 5387 5023 18985 175 19 15 chr12 35690054 35695347 -108091108 - L1PA13 LINE L1 -4 6810 1404 4071 238 130 7 chr12 35695415 35696507 -108089948 - L1PA13 LINE L1 -5560 1227 2 376 264 132 19 chr12 35697107 35697319 -108089136 + LTR16B LTR ERVL 109 344 -120 195 42 0 0 chr12 35697397 35697421 -108089034 + (CA)n Simple_repeat Simple_repeat 1 24 0 4004 142 41 14 chr12 35697551 35698240 -108088215 + MER39 LTR ERV1 1 707 0 23 68 0 0 chr12 35698253 35698297 -108088158 + AT_rich Low_complexity Low_complexity 1 44 0 22 80 0 0 chr12 35698343 35698393 -108088062 + AT_rich Low_complexity Low_complexity 1 50 0 378 175 135 56 chr12 35698393 35698519 -108087936 - MER96B DNA MER1_type? -281 136 1 273 313 175 32 chr12 35698681 35698898 -108087557 + L2 LINE L2 2804 3051 -221 183 80 0 0 chr12 35699241 35699266 -108087189 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 267 226 0 0 chr12 35700131 35700184 -108086271 - MIR3 SINE MIR -6 202 150 41666 42 3 2 chr12 35700500 35706650 -108079805 + L1PA3 LINE L1 3 6155 0 1744 188 7 3 chr12 35707654 35707963 -108078492 - AluJb SINE Alu -2 310 1 28 29 0 0 chr12 35708341 35708376 -108078079 + AT_rich Low_complexity Low_complexity 1 35 0 626 319 89 5 chr12 35709068 35709281 -108077174 + L3 LINE CR1 1309 1539 -38 287 284 74 32 chr12 35709501 35709596 -108076859 + L2 LINE L2 3137 3235 -37 262 266 165 37 chr12 35709685 35709794 -108076661 - MIR SINE MIR -96 166 44 2515 157 19 5 chr12 35709897 35710317 -108076138 + MSTB LTR MaLR 1 426 0 692 303 79 39 chr12 35711513 35711955 -108074500 + MLT1G LTR MaLR 113 572 -18 801 184 85 72 chr12 35712738 35712961 -108073494 - MLT2D LTR ERVL -5 409 184 785 164 0 7 chr12 35713044 35713184 -108073271 + MLT1A1 LTR MaLR 227 365 0 954 140 135 5 chr12 35713186 35713386 -108073069 + MSTA LTR MaLR 1 226 -202 1783 73 0 0 chr12 35713386 35713620 -108072835 - LTR12 LTR ERV1 -2 712 479 4754 124 80 19 chr12 35713620 35714396 -108072059 - LTR12 LTR ERV1 -3 823 1 786 141 25 55 chr12 35714397 35714560 -108071895 + MSTA LTR MaLR 207 364 0 516 245 123 55 chr12 35714615 35715483 -108070972 - HAL1 LINE L1 -114 2393 1390 246 79 0 0 chr12 35715489 35715527 -108070928 + MER4E LTR ERV1 162 199 -567 7710 21 1 0 chr12 35715527 35716996 -108069459 - L1PA3 LINE L1 0 6155 4684 10794 31 20 0 chr12 35716997 35718365 -108068090 + L1PA3 LINE L1 3283 4677 -1469 2269 172 50 61 chr12 35718366 35718943 -108067512 + LTR49 LTR ERV1 25 595 0 937 276 75 63 chr12 35719060 35719232 -108067223 - HAL1 LINE L1 -1254 1253 1085 2269 102 3 0 chr12 35719232 35719525 -108066930 - AluSp SINE Alu -18 295 2 937 276 75 63 chr12 35719525 35720023 -108066432 - HAL1 LINE L1 -1422 1085 575 4771 141 162 21 chr12 35720881 35721840 -108064615 - Tigger3b DNA MER2_type -1810 1218 92 4538 64 87 0 chr12 35721840 35722447 -108064008 - PABL_A LTR ERV1 0 660 1 4771 141 162 21 chr12 35722447 35722554 -108063901 - Tigger3b DNA MER2_type -2936 92 1 1823 186 3 0 chr12 35722671 35722972 -108063483 + AluJo SINE Alu 1 302 -10 1001 296 21 0 chr12 35723465 35723708 -108062747 - MIR SINE MIR -12 250 3 2373 115 0 0 chr12 35724034 35724346 -108062109 + AluSx SINE Alu 1 312 0 2266 113 43 61 chr12 35724796 35725238 -108061217 + LTR23 LTR ERV1 4 437 0 1656 162 3 0 chr12 35725743 35726027 -108060428 + MER34C LTR ERV1 12 296 -289 362 301 124 13 chr12 35726037 35726190 -108060265 + MIR SINE MIR 82 251 -11 850 231 143 128 chr12 35726595 35726923 -108059532 - MER50 LTR ERV1 0 734 413 463 180 0 0 chr12 35726923 35727012 -108059443 - L1PA11 LINE L1 -4 6170 6082 850 231 143 128 chr12 35727012 35727397 -108059058 - MER50 LTR ERV1 -321 413 10 289 291 71 40 chr12 35727406 35727588 -108058867 + MIR SINE MIR 2 184 -63 3043 147 16 8 chr12 35727610 35728112 -108058343 - MER84 LTR ERV1 0 507 2 449 122 14 14 chr12 35728112 35728186 -108058269 - MER84 LTR ERVI -433 74 1 181 283 65 0 chr12 35728190 35728236 -108058219 + MIR SINE MIR 210 258 -4 1318 227 104 19 chr12 35728568 35729204 -108057251 + LTR48 LTR ERV1 17 542 0 1015 107 13 7 chr12 35729543 35729692 -108056763 - AluY SINE Alu -4 307 158 297 358 16 24 chr12 35729783 35729897 -108056558 + MIR SINE MIR 32 145 -73 3130 113 0 13 chr12 35729897 35730367 -108056088 - MER4C LTR ERV1 0 465 2 2103 161 8 31 chr12 35731430 35731814 -108054641 + THE1C LTR MaLR 1 375 0 9284 121 35 43 chr12 35731814 35732292 -108054163 + THE1C-int LTR MaLR 1 481 -1099 2269 97 3 3 chr12 35732292 35732592 -108053863 + AluY SINE Alu 1 300 -11 9284 121 35 43 chr12 35732592 35733705 -108052750 + THE1C-int LTR MaLR 481 1580 0 2395 133 8 11 chr12 35733705 35734081 -108052374 + THE1C LTR MaLR 1 375 0 1666 181 25 54 chr12 35734500 35734546 -108051909 - MLT2C1 LTR ERVL -1 396 350 387 0 0 0 chr12 35734546 35734589 -108051866 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1666 181 25 54 chr12 35734589 35734950 -108051505 - MLT2C1 LTR ERVL -47 350 1 210 271 29 57 chr12 35735308 35735378 -108051077 - L2 LINE L2 -18 3254 3187 217 293 49 57 chr12 35735448 35735571 -108050884 - L2 LINE L2 -185 3087 2966 180 111 0 0 chr12 35736552 35736579 -108049876 + (TG)n Simple_repeat Simple_repeat 2 28 0 1042 198 30 128 chr12 35736852 35737257 -108049198 + MLT1A1 LTR MaLR 1 365 0 1039 119 6 6 chr12 35737326 35737355 -108049100 + (TTCC)n Simple_repeat Simple_repeat 1 206 0 1039 119 6 6 chr12 35737355 35737532 -108048923 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 758 269 56 0 chr12 35737692 35737889 -108048566 - MIR SINE MIR -6 256 49 2091 157 22 37 chr12 35741100 35741509 -108044946 + L1MA6 LINE L1 5633 6035 -265 834 119 45 0 chr12 35741518 35741652 -108044803 - Tigger1 DNA MER2_type -7 2411 2272 1090 237 88 10 chr12 35741671 35741979 -108044476 + LTR40b LTR ERVL 124 455 -7 599 211 8 24 chr12 35742504 35742627 -108043828 + FLAM_A SINE Alu 2 122 -11 3727 45 0 6 chr12 35742856 35742876 -108043579 + L1P LINE L1 4541 4560 -1586 225 0 0 0 chr12 35742876 35742901 -108043554 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 7466 25 5 0 chr12 35742901 35744026 -108042429 - L1PA3 LINE L1 -10 6145 5012 3727 45 0 6 chr12 35744026 35744493 -108041962 + L1P LINE L1 4558 5026 -1120 1557 145 74 26 chr12 35745472 35745763 -108040692 + AluJo SINE Alu 1 304 0 22 0 0 0 chr12 35746385 35746407 -108040048 + AT_rich Low_complexity Low_complexity 1 22 0 343 279 183 14 chr12 35746818 35747037 -108039418 + MIR SINE MIR 3 258 -4 256 287 93 0 chr12 35747383 35747491 -108038964 + HAL1 LINE L1 6 123 -2384 * 3410 256 64 95 chr12 35747481 35748361 -108038094 + L1MDa LINE L1 3 908 -5632 1588 176 33 19 chr12 35748361 35748668 -108037787 - AluJb SINE Alu -1 311 1 3410 256 64 95 chr12 35748668 35748703 -108037752 + L1MDa LINE L1 908 943 -5597 2668 188 40 4 chr12 35748703 35749204 -108037251 + LTR53 LTR ERVL 1 519 0 3410 256 64 95 chr12 35749204 35749828 -108036627 + L1MDa LINE L1 943 1496 -5044 1734 192 29 39 chr12 35749829 35750500 -108035955 + L1MC/D LINE L1 4964 5629 -730 290 296 28 19 chr12 35750507 35750615 -108035840 - MER87 LTR ERV1 0 541 433 699 209 17 17 chr12 35750981 35751153 -108035302 + L1MC/D LINE L1 5630 5801 -558 268 322 11 22 chr12 35751475 35751565 -108034890 - MIR SINE MIR -165 97 9 771 233 83 92 chr12 35752391 35752933 -108033522 - MER34 LTR ERV1 -5 537 1 3456 80 4 2 chr12 35753131 35753583 -108032872 - MLT2A2 LTR ERVL 0 453 1 2639 173 31 68 chr12 35753819 35754418 -108032037 + LTR9 LTR ERV1 1 577 -35 5680 151 20 31 chr12 35754418 35755501 -108030954 - MER11C LTR ERVK 0 1071 1 2639 173 31 68 chr12 35755501 35755536 -108030919 + LTR9 LTR ERV1 577 612 0 2107 122 0 32 chr12 35755837 35756148 -108030307 + AluSx SINE Alu 3 303 -9 491 224 26 9 chr12 35756336 35756452 -108030003 - LTR52 LTR ERVL -37 384 267 472 242 46 20 chr12 35756489 35756642 -108029813 - LTR52 LTR ERVL -256 165 9 2379 97 0 0 chr12 35756699 35756997 -108029458 + AluSc SINE Alu 1 298 -11 21 0 0 0 chr12 35757167 35757188 -108029267 + AT_rich Low_complexity Low_complexity 1 21 0 410 261 0 0 chr12 35757614 35757702 -108028753 + MER58 DNA MER1_type 12 99 -2321 511 184 0 19 chr12 35757714 35757817 -108028638 + MER58 DNA MER1_type 2318 2418 -2 251 367 44 0 chr12 35760852 35761032 -108025423 + L1ME LINE L1 5376 5563 -603 322 258 58 65 chr12 35761866 35762021 -108024434 - L2 LINE L2 0 3313 3160 251 204 57 34 chr12 35762124 35762212 -108024243 - L1ME3A LINE L1 -158 6012 5923 914 314 33 18 chr12 35762256 35762712 -108023743 + ERVL LTR ERVL 2454 2916 -2848 776 257 84 4 chr12 35763296 35763545 -108022910 + ERVL LTR ERVL 4780 5048 -716 2430 187 41 98 chr12 35763561 35764288 -108022167 + LTR8A LTR ERV1 34 719 -8 561 279 32 59 chr12 35764292 35764659 -108021796 + ERVL LTR ERVL 5042 5364 -290 1024 307 79 31 chr12 35764932 35765371 -108021084 - L2 LINE L2 0 3313 2845 279 0 0 0 chr12 35765371 35765402 -108021053 + (TG)n Simple_repeat Simple_repeat 1 31 0 1024 307 79 31 chr12 35765402 35765480 -108020975 - L2 LINE L2 -468 2845 2772 1436 248 33 20 chr12 35766066 35766457 -108019998 - MSTD LTR MaLR 0 396 1 2069 159 22 37 chr12 35768344 35768753 -108017702 + L1MA6 LINE L1 5633 6035 -265 834 119 45 0 chr12 35768762 35768896 -108017559 - Tigger1 DNA MER2_type -7 2411 2272 1090 237 88 10 chr12 35768915 35769223 -108017232 + LTR40b LTR ERVL 124 455 -7 181 366 59 0 chr12 35769233 35769334 -108017121 + L2 LINE L2 2726 2832 -482 628 235 0 0 chr12 35769748 35769863 -108016592 + FLAM_A SINE Alu 2 116 -17 225 0 0 0 chr12 35770121 35770146 -108016309 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 38967 41 26 2 chr12 35770146 35776065 -108010390 - L1PA3 LINE L1 -10 6145 84 21 0 0 0 chr12 35776199 35776220 -108010235 + AT_rich Low_complexity Low_complexity 1 21 0 245 286 16 0 chr12 35776624 35776687 -108009768 - MLT1J2 LTR MaLR -44 406 343 442 239 107 41 chr12 35776750 35776947 -108009508 - MLT1J2 LTR MaLR -240 210 1 277 323 0 0 chr12 35777569 35777662 -108008793 + L2 LINE L2 3221 3313 0 277 258 0 0 chr12 35778929 35778991 -108007464 - MER94 DNA DNA -72 62 1 311 113 31 16 chr12 35779223 35779294 -108007161 - MLT2D LTR ERVL 0 515 454 1344 224 64 3 chr12 35779358 35779702 -108006753 - MLT2D LTR ERVL -49 365 1 378 348 44 0 chr12 35779705 35779840 -108006615 - MIR SINE MIR -118 144 4 246 373 24 24 chr12 35779843 35779969 -108006486 - L2 LINE L2 -265 3007 2882 2205 112 7 0 chr12 35780451 35780747 -108005708 - AluSx SINE Alu -14 298 1 228 203 43 14 chr12 35780787 35780856 -108005599 + T-rich Low_complexity Low_complexity 1 71 0 272 291 13 0 chr12 35780891 35780970 -108005485 + (TAAA)n Simple_repeat Simple_repeat 3 82 0 252 59 0 0 chr12 35781186 35781220 -108005235 + (TC)n Simple_repeat Simple_repeat 1 34 0 1522 227 73 16 chr12 35781229 35781679 -108004776 - L1ME1 LINE L1 -318 5848 5373 36 40 0 0 chr12 35782180 35782230 -108004225 + AT_rich Low_complexity Low_complexity 1 50 0 365 172 66 2 chr12 35782231 35782697 -108003758 + (TA)n Simple_repeat Simple_repeat 1 495 0 357 144 75 0 chr12 35782713 35782891 -108003564 + (TA)n Simple_repeat Simple_repeat 1 191 0 2481 142 47 0 chr12 35782971 35783380 -108003075 + MSTC LTR MaLR 1 428 0 2990 125 30 118 chr12 35784769 35785440 -108001015 - LTR9 LTR ERV1 0 612 1 23 33 0 0 chr12 35785499 35785529 -108000926 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr12 35785782 35785816 -108000639 + AT_rich Low_complexity Low_complexity 1 34 0 330 354 24 0 chr12 35786071 35786198 -108000257 + MIR SINE MIR 102 231 -31 451 255 9 9 chr12 35786366 35786472 -107999983 + L2 LINE L2 3192 3297 -16 844 295 62 7 chr12 35787099 35787404 -107999051 - HERV16 LTR ERVL -2727 2269 1948 425 258 120 9 chr12 35787741 35787958 -107998497 + LTR16A1 LTR ERVL 202 442 -15 350 62 0 0 chr12 35787955 35788003 -107998452 - Alu SINE Alu -253 48 1 * 1615 176 65 3 chr12 35788005 35788329 -107998126 - Tigger3(Golem) DNA MER2_type -2685 344 1 21 36 0 0 chr12 35788608 35788636 -107997819 + AT_rich Low_complexity Low_complexity 1 28 0 1855 166 7 0 chr12 35788912 35789202 -107997253 - AluJb SINE Alu -9 303 12 202 268 0 54 chr12 35789241 35789297 -107997158 + L2 LINE L2 3004 3056 -257 2819 146 80 4 chr12 35789393 35789985 -107996470 - LTR24C LTR ERV1 0 593 2 236 245 0 0 chr12 35790012 35790065 -107996390 + MLT1F LTR MaLR 2 54 -488 256 329 12 29 chr12 35790160 35790330 -107996125 + CT-rich Low_complexity Low_complexity 3 169 0 * 395 307 0 20 chr12 35790208 35790361 -107996094 + C-rich Low_complexity Low_complexity 1 150 0 551 283 122 28 chr12 35790563 35790810 -107995645 + MLT1F LTR MaLR 220 464 -78 1875 122 0 4 chr12 35790866 35791128 -107995327 + AluSg SINE Alu 1 261 -49 300 293 21 14 chr12 35791145 35791285 -107995170 + MLT1F-int LTR MaLR 1 141 -1230 657 239 66 66 chr12 35791286 35791620 -107994835 + MLT1F-int LTR MaLR 278 611 -760 2234 149 0 5 chr12 35791770 35792138 -107994317 + MER47A DNA MER2_type 1 366 0 1933 162 128 10 chr12 35792336 35792719 -107993736 + MSTA LTR MaLR 1 428 0 3918 190 30 4 chr12 35792719 35793507 -107992948 + MSTA-int LTR MaLR 1 809 -842 1055 203 99 60 chr12 35793751 35794165 -107992290 + LTR8A LTR ERV1 290 719 -8 3451 144 76 19 chr12 35794173 35794817 -107991638 + MER39 LTR ERV1 27 707 0 545 300 31 27 chr12 35794817 35795040 -107991415 - HsTC2 DNA Tc2 -1187 711 488 228 177 0 32 chr12 35795044 35795106 -107991349 - HsTC2 DNA Tc2 -1607 291 232 21 0 0 0 chr12 35795427 35795448 -107991007 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 35795635 35795656 -107990799 + AT_rich Low_complexity Low_complexity 1 21 0 4670 156 20 14 chr12 35795729 35796610 -107989845 - L1MA4 LINE L1 0 6300 5414 2717 133 69 0 chr12 35796814 35797318 -107989137 + MER34C LTR ERV1 40 578 -7 3153 215 106 56 chr12 35797336 35798402 -107988053 - LTR28 LTR ERV1 -19 1736 1 24 53 0 0 chr12 35798444 35798482 -107987973 + AT_rich Low_complexity Low_complexity 1 38 0 1029 202 19 30 chr12 35798995 35799262 -107987193 - LTR48B LTR ERV1 0 644 381 205 261 43 33 chr12 35799469 35799561 -107986894 - L2 LINE L2 -1905 1409 1317 2088 151 19 53 chr12 35799561 35799991 -107986464 + MSTC LTR MaLR 1 415 -13 1137 316 41 0 chr12 35800040 35800385 -107986070 - L2 LINE L2 -2047 1267 909 2576 266 109 25 chr12 35800395 35801388 -107985067 + L2 LINE L2 1705 2780 -534 691 323 130 22 chr12 35801440 35801809 -107984646 + L2 LINE L2 2904 3312 -1 308 200 0 0 chr12 35802011 35802066 -107984389 - tRNA-Met-e tRNA tRNA -20 55 1 1557 173 0 18 chr12 35802839 35803116 -107983339 + AluJo SINE Alu 40 311 -1 23 0 0 0 chr12 35804512 35804535 -107981920 + AT_rich Low_complexity Low_complexity 1 23 0 1357 240 9 76 chr12 35804736 35805186 -107981269 - LTR40a LTR ERVL 0 519 100 1034 129 8 98 chr12 35805243 35805299 -107981156 - L1MA7 LINE L1 -138 6153 6094 1953 153 143 11 chr12 35805299 35805677 -107980778 + MSTC LTR MaLR 1 428 0 1034 129 8 98 chr12 35805677 35805876 -107980579 - L1MA7 LINE L1 -197 6094 5921 4844 187 25 16 chr12 35806813 35807791 -107978664 + L1M1 LINE L1 626 1611 -5954 * 6403 117 24 5 chr12 35807774 35808850 -107977605 + L1M1 LINE L1 2198 3294 -4271 2466 42 7 3 chr12 35809412 35809722 -107976733 + AluY SINE Alu 1 311 0 592 337 129 5 chr12 35809761 35810132 -107976323 + L2 LINE L2 2897 3313 0 1467 201 52 4 chr12 35810139 35810408 -107976047 + AluJo SINE Alu 1 282 -30 7189 90 4 7 chr12 35810718 35811794 -107974661 + L1P LINE L1 3939 5011 -1135 3382 178 21 10 chr12 35811905 35812813 -107973642 + L1M1 LINE L1 3413 4330 -3235 931 200 12 0 chr12 35812820 35813041 -107973414 + AluJb SINE Alu 145 367 0 3924 192 12 16 chr12 35813041 35814004 -107972451 + L1M1 LINE L1 4315 5274 -2291 1764 124 0 3 chr12 35814004 35814283 -107972172 + L1MA2 LINE L1 6024 6304 0 4029 65 0 6 chr12 35814770 35815294 -107971161 - L1PA5 LINE L1 -3 6151 5631 2558 148 34 5 chr12 35816046 35816459 -107969996 - MSTB LTR MaLR 0 426 2 469 181 9 48 chr12 35817547 35817652 -107968803 + MLT1B LTR MaLR 290 390 0 405 274 11 0 chr12 35818735 35818830 -107967625 + MER20B DNA MER1_type 101 196 -587 26 0 0 0 chr12 35818834 35818860 -107967595 + AT_rich Low_complexity Low_complexity 1 26 0 4979 156 33 13 chr12 35818866 35820164 -107966291 - L1MA8 LINE L1 -15 6276 4954 364 319 59 25 chr12 35821445 35821564 -107964891 + L2 LINE L2 3142 3264 -8 887 183 6 0 chr12 35821847 35822022 -107964433 - L1MB1 LINE L1 -2 6166 5991 180 111 0 0 chr12 35822782 35822809 -107963646 + (TG)n Simple_repeat Simple_repeat 2 28 0 1042 198 30 128 chr12 35823082 35823487 -107962968 + MLT1A1 LTR MaLR 1 365 0 458 173 5 54 chr12 35823576 35823761 -107962694 + CT-rich Low_complexity Low_complexity 4 179 0 1023 47 8 0 chr12 35824224 35824372 -107962083 + L1PA3 LINE L1 6015 6163 0 1907 110 13 23 chr12 35825149 35825450 -107961005 - AluSg SINE Alu -12 298 1 24 0 0 0 chr12 35826147 35826171 -107960284 + AT_rich Low_complexity Low_complexity 1 24 0 413 280 47 76 chr12 35826931 35827167 -107959288 + L2 LINE L2 2281 2509 -805 577 203 154 12 chr12 35827276 35827599 -107958856 - LTR48 LTR ERV1 -340 447 4 3663 88 31 99 chr12 35827736 35828380 -107958075 - MER4A LTR ERV1 0 600 1 191 333 13 13 chr12 35828609 35828684 -107957771 - L2 LINE L2 -3 3310 3236 2993 131 35 36 chr12 35829981 35830532 -107955923 - MER21A LTR ERV1 -6 925 376 1230 121 109 4 chr12 35830537 35830776 -107955679 - MER21A LTR ERV1 -667 264 1 380 332 21 58 chr12 35831048 35831238 -107955217 - MIR SINE MIR -78 184 2 2807 193 39 15 chr12 35831479 35832097 -107954358 + LTR48B LTR ERV1 1 633 -11 3149 11 0 0 chr12 35832097 35832466 -107953989 + L1PA3 LINE L1 5637 6005 -150 221 170 19 94 chr12 35832609 35832715 -107953740 + (CACCC)n Simple_repeat Simple_repeat 1 98 0 210 150 0 0 chr12 35832726 35832766 -107953689 + (C)n Simple_repeat Simple_repeat 1 40 0 221 179 19 75 chr12 35832771 35832877 -107953578 + C-rich Low_complexity Low_complexity 5 104 0 182 133 0 22 chr12 35833014 35833059 -107953396 + (CACCC)n Simple_repeat Simple_repeat 3 46 0 436 222 30 36 chr12 35833692 35833859 -107952596 - LTR36 LTR ERV1 -445 166 1 4119 92 10 88 chr12 35834226 35834946 -107951509 - MER4A LTR ERV1 0 664 1 217 103 15 59 chr12 35834987 35835055 -107951400 + (TTC)n Simple_repeat Simple_repeat 2 66 0 3721 158 112 7 chr12 35836370 35837117 -107949338 - LTR1B LTR ERV1 0 826 1 798 274 118 14 chr12 35837247 35837535 -107948920 - LTR36 LTR ERV1 0 611 294 286 356 80 16 chr12 35838472 35838660 -107947795 + MIR SINE MIR 24 223 -39 266 299 120 48 chr12 35838744 35838821 -107947634 + MIR SINE MIR 64 134 -128 2497 57 3 0 chr12 35838821 35839121 -107947334 + AluY SINE Alu 1 301 -10 266 299 120 48 chr12 35839121 35839210 -107947245 + MIR SINE MIR 134 242 -20 189 205 51 0 chr12 35839180 35839219 -107947236 + L2 LINE L2 3217 3257 -15 * 249 230 158 65 chr12 35840193 35840488 -107945967 + L1ME LINE L1 5270 5555 -607 1963 119 0 30 chr12 35840644 35840946 -107945509 - AluSq SINE Alu -6 307 15 272 243 27 0 chr12 35841116 35841190 -107945265 - L1MC4 LINE L1 -140 7902 7827 551 273 204 0 chr12 35842135 35842367 -107944088 + MER102a DNA MER1_type 46 320 -10 1331 52 0 0 chr12 35848307 35848462 -107937993 - AluSq SINE Alu -77 236 82 2506 80 0 0 chr12 35848684 35848995 -107937460 - AluSq SINE Alu 0 313 3 387 119 0 0 chr12 35849885 35849952 -107936503 + (TG)n Simple_repeat Simple_repeat 2 68 0 252 300 11 44 chr12 35850291 35850381 -107936074 - MIR SINE MIR -141 121 35 297 0 0 0 chr12 35850619 35850652 -107935803 + (A)n Simple_repeat Simple_repeat 1 33 0 680 229 75 54 chr12 35851642 35851882 -107934573 - MIR SINE MIR 0 262 18 25 0 0 0 chr12 35852287 35852312 -107934143 + AT_rich Low_complexity Low_complexity 1 25 0 277 275 25 12 chr12 35852980 35853060 -107933395 - MIR SINE MIR -122 140 60 28 0 0 0 chr12 35854621 35854649 -107931806 + AT_rich Low_complexity Low_complexity 1 28 0 357 306 191 5 chr12 35855264 35855473 -107930982 + L2 LINE L2 2554 2801 -513 445 213 0 87 chr12 35855487 35855562 -107930893 - MER94 DNA DNA -14 120 59 1525 138 63 0 chr12 35855562 35855801 -107930654 - AluSx SINE Alu -20 292 39 445 213 0 87 chr12 35855801 35855852 -107930603 - MER94 DNA DNA -75 59 5 592 336 95 39 chr12 35855864 35855948 -107930507 + L2 LINE L2 2805 2883 -430 201 74 0 0 chr12 35855948 35855975 -107930480 + (TG)n Simple_repeat Simple_repeat 2 28 0 592 336 95 39 chr12 35855975 35856372 -107930083 + L2 LINE L2 2883 3313 0 350 359 81 31 chr12 35856754 35856977 -107929478 + MIR SINE MIR 4 237 -25 338 305 0 0 chr12 35856983 35857065 -107929390 + L2 LINE L2 3186 3267 -5 1745 142 29 7 chr12 35857278 35857553 -107928902 - AluJb SINE Alu -12 300 20 222 363 105 11 chr12 35858776 35858966 -107927489 + MIR SINE MIR 7 214 -48 390 286 36 0 chr12 35859476 35859588 -107926867 + MIR3 SINE MIR 87 202 -6 25 0 0 0 chr12 35860099 35860124 -107926331 + AT_rich Low_complexity Low_complexity 1 25 0 223 304 0 0 chr12 35860157 35860213 -107926242 + (TA)n Simple_repeat Simple_repeat 1 56 0 309 319 43 35 chr12 35860238 35860354 -107926101 - L2 LINE L2 0 3272 3156 205 138 0 0 chr12 35860352 35860381 -107926074 + MIR SINE MIR 82 110 -152 * 2173 114 13 0 chr12 35860457 35860765 -107925690 - AluSx SINE Alu 0 312 1 231 88 0 0 chr12 35860768 35860802 -107925653 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 389 71 0 214 chr12 35862480 35862578 -107923877 - MADE1 DNA Mariner -1 79 3 628 308 88 12 chr12 35863088 35863547 -107922908 + L2 LINE L2 2645 3310 -3 394 363 19 0 chr12 35864101 35864258 -107922197 - MIR SINE MIR -50 212 53 2283 82 3 3 chr12 35864340 35864644 -107921811 + AluY SINE Alu 4 307 -4 183 352 0 19 chr12 35865026 35865080 -107921375 + L2 LINE L2 2087 2139 -1175 415 343 73 11 chr12 35865454 35865632 -107920823 + MIR3 SINE MIR 18 206 -2 21 36 0 0 chr12 35866021 35866049 -107920406 + AT_rich Low_complexity Low_complexity 1 28 0 1760 64 176 0 chr12 35866217 35866467 -107919988 - AluSc SINE Alu -5 294 1 691 230 64 5 chr12 35866716 35866920 -107919535 - LTR33 LTR ERVL -1 520 305 189 336 124 25 chr12 35867265 35867506 -107918949 - L2 LINE L2 -179 3093 2829 2391 86 0 0 chr12 35867761 35868064 -107918391 + AluY SINE Alu 1 303 -8 486 284 80 38 chr12 35868283 35868522 -107917933 - MIR SINE MIR -12 250 2 21 0 0 0 chr12 35869291 35869312 -107917143 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr12 35869821 35869854 -107916601 + AT_rich Low_complexity Low_complexity 1 33 0 2073 125 3 7 chr12 35870272 35870569 -107915886 + AluSx SINE Alu 1 296 -16 22 70 0 0 chr12 35871050 35871093 -107915362 + AT_rich Low_complexity Low_complexity 1 43 0 246 276 209 22 chr12 35871362 35871496 -107914959 - L2 LINE L2 -7 3265 3107 22 70 0 0 chr12 35872701 35872744 -107913711 + AT_rich Low_complexity Low_complexity 1 43 0 2038 123 7 13 chr12 35872772 35873073 -107913382 - AluSx SINE Alu -13 299 1 859 164 6 18 chr12 35873625 35873790 -107912665 + MLT1D LTR MaLR 1 163 -342 572 184 95 89 chr12 35873792 35873920 -107912535 + MLT1D LTR MaLR 287 418 -87 2241 100 3 10 chr12 35873920 35874229 -107912226 - AluSg SINE Alu -3 307 1 572 184 95 89 chr12 35874229 35874290 -107912165 + MLT1D LTR MaLR 418 477 -28 259 128 256 0 chr12 35874324 35874402 -107912053 + MLT1D LTR MaLR 408 505 0 23 33 0 0 chr12 35874423 35874453 -107912002 + AT_rich Low_complexity Low_complexity 1 30 0 249 231 138 0 chr12 35874679 35874744 -107911711 + L2 LINE L2 3239 3312 -1 23 0 0 0 chr12 35875054 35875077 -107911378 + AT_rich Low_complexity Low_complexity 1 23 0 329 294 91 21 chr12 35875357 35875500 -107910955 + L1ME4a LINE L1 5628 5780 -341 274 264 108 7 chr12 35875588 35875736 -107910719 + L1ME4a LINE L1 5956 6118 -3 1851 176 0 13 chr12 35877134 35877447 -107909008 - AluJo SINE Alu -3 309 1 1994 136 0 0 chr12 35878759 35879039 -107907416 - AluSx SINE Alu -17 295 16 1902 62 0 8 chr12 35879047 35879288 -107907167 - AluY SINE Alu -8 303 65 446 272 200 56 chr12 35879288 35879600 -107906855 + L3 LINE CR1 1113 1473 -104 22 0 0 0 chr12 35880348 35880370 -107906085 + AT_rich Low_complexity Low_complexity 1 22 0 651 306 77 5 chr12 35880467 35880689 -107905766 - MIR SINE MIR -20 242 5 314 143 16 0 chr12 35882309 35882372 -107904083 + (TG)n Simple_repeat Simple_repeat 2 65 0 458 272 66 15 chr12 35882803 35882939 -107903516 + MIR SINE MIR 44 186 -76 33 73 0 0 chr12 35883714 35883782 -107902673 + AT_rich Low_complexity Low_complexity 1 68 0 384 22 0 0 chr12 35885183 35885228 -107901227 + (CA)n Simple_repeat Simple_repeat 1 45 0 1235 171 18 13 chr12 35886214 35886442 -107900013 + MLT1A1 LTR MaLR 1 229 -136 298 343 74 23 chr12 35887001 35887217 -107899238 - L2 LINE L2 -522 2792 2566 260 275 14 0 chr12 35887290 35887359 -107899096 - L2 LINE L2 -958 2356 2287 400 358 88 39 chr12 35887429 35887743 -107898712 - L2 LINE L2 -1154 2160 1814 2346 83 0 3 chr12 35887743 35888044 -107898411 + AluY SINE Alu 1 300 -11 400 358 88 39 chr12 35888044 35888196 -107898259 - L2 LINE L2 -1500 1814 1671 2022 138 3 3 chr12 35889469 35889480 -107896975 - AluSq SINE Alu -17 296 286 459 0 0 0 chr12 35889480 35889531 -107896924 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2022 138 3 3 chr12 35889531 35889815 -107896640 - AluSq SINE Alu -26 287 1 279 315 9 0 chr12 35890875 35890983 -107895472 + GA-rich Low_complexity Low_complexity 2 110 0 1020 203 32 81 chr12 35891046 35891356 -107895099 + MLT1B LTR MaLR 4 298 -92 266 351 157 36 chr12 35891643 35891891 -107894564 + L2 LINE L2 156 433 -2881 267 259 80 62 chr12 35892239 35892351 -107894104 + L2 LINE L2 2276 2389 -925 596 98 0 43 chr12 35892352 35892468 -107893987 + FRAM SINE Alu 59 170 0 449 204 0 0 chr12 35893145 35893233 -107893222 + L2 LINE L2 818 905 -2409 694 332 35 14 chr12 35893250 35893533 -107892922 + L2 LINE L2 1145 1433 -1881 377 289 35 0 chr12 35893536 35893650 -107892805 - L2 LINE L2 -1621 1693 1576 21 0 0 0 chr12 35894040 35894061 -107892394 + AT_rich Low_complexity Low_complexity 1 21 0 340 374 24 15 chr12 35894297 35894503 -107891952 - HAL1b LINE L1 -659 689 482 1182 198 132 40 chr12 35894755 35895028 -107891427 + AluJo SINE Alu 1 298 -4 22 0 0 0 chr12 35895247 35895269 -107891186 + AT_rich Low_complexity Low_complexity 1 22 0 1534 97 5 0 chr12 35895500 35895696 -107890759 - AluSp SINE Alu -16 297 101 593 77 0 0 chr12 35897580 35897658 -107888797 - MADE1 DNA Mariner 0 80 3 16565 61 3 0 chr12 35897658 35899808 -107886647 + L1P LINE L1 914 3070 -3076 240 361 37 19 chr12 35900150 35900258 -107886197 + MIR SINE MIR 34 143 -119 240 170 0 0 chr12 35900700 35900747 -107885708 + Alu SINE Alu 254 300 -1 2608 205 68 27 chr12 35900864 35901352 -107885103 - L1MB8 LINE L1 0 6178 5711 2213 164 6 0 chr12 35901352 35901687 -107884768 + MER1B DNA MER1_type 1 337 0 2608 205 68 27 chr12 35901687 35902523 -107883932 - L1MB8 LINE L1 -467 5711 4758 2111 134 3 3 chr12 35902682 35902987 -107883468 + AluSx SINE Alu 1 305 -7 602 326 61 13 chr12 35902997 35903631 -107882824 - L1ME3A LINE L1 -310 5860 5194 995 127 16 42 chr12 35903636 35903825 -107882630 - FRAM SINE Alu 0 176 1 363 301 124 13 chr12 35904436 35904589 -107881866 - MIR SINE MIR -11 251 82 1747 162 3 0 chr12 35904599 35904883 -107881572 - MER34C LTR ERV1 -289 296 12 2212 117 43 64 chr12 35905409 35905828 -107880627 - LTR23 LTR ERV1 -24 413 4 1598 229 32 87 chr12 35906478 35907125 -107879330 + LTR9 LTR ERV1 1 612 0 348 336 168 38 chr12 35907745 35908358 -107878097 - L2 LINE L2 -1904 1410 718 200 184 0 0 chr12 35908628 35908666 -107877789 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 187 247 24 82 chr12 35908909 35908994 -107877461 + L2 LINE L2 1153 1232 -2082 22 35 0 0 chr12 35909116 35909145 -107877310 + AT_rich Low_complexity Low_complexity 1 29 0 1057 273 62 67 chr12 35909382 35909847 -107876608 - MLT1J LTR MaLR -42 469 7 22 35 0 0 chr12 35909978 35910007 -107876448 + AT_rich Low_complexity Low_complexity 1 29 0 398 300 21 7 chr12 35910007 35910147 -107876308 + HsTC2 DNA Tc2 4 145 -1753 2076 235 73 19 chr12 35910155 35910743 -107875712 + HsTC2 DNA Tc2 1274 1893 -5 336 242 0 0 chr12 35910906 35910972 -107875483 + L2 LINE L2 3243 3308 -5 265 268 82 21 chr12 35912350 35912447 -107874008 + MIR SINE MIR 42 144 -64 314 231 77 115 chr12 35912941 35912968 -107873487 - L2 LINE L2 0 3313 3286 2219 99 3 7 chr12 35912968 35913270 -107873185 + AluSp SINE Alu 1 301 -12 314 231 77 115 chr12 35913270 35913372 -107873083 - L2 LINE L2 -27 3286 3189 834 153 90 37 chr12 35918961 35919150 -107867305 - AluJo SINE Alu -113 199 1 2380 92 0 6 chr12 35921187 35921523 -107864932 - AluSq SINE Alu 0 334 1 999 281 102 52 chr12 35921524 35922340 -107864115 - HAL1 LINE L1 -1021 1486 630 357 263 77 94 chr12 35922363 35922885 -107863570 - HAL1 LINE L1 -1953 554 42 224 311 48 39 chr12 35922942 35923045 -107863410 + L2 LINE L2 2727 2830 -484 304 319 44 9 chr12 35923137 35923250 -107863205 + L2 LINE L2 3197 3313 0 2268 140 22 0 chr12 35923333 35923689 -107862766 - THE1B LTR MaLR 0 364 1 591 318 50 14 chr12 35923983 35924203 -107862252 - MIR SINE MIR -33 229 2 750 181 6 6 chr12 35924557 35924723 -107861732 - L1MA9 LINE L1 0 6312 6147 12812 108 41 122 chr12 35924746 35925705 -107860750 - Tigger1 DNA MER2_type 0 2418 1383 2166 134 6 0 chr12 35925705 35926041 -107860414 + L1PA16 LINE L1 5828 6165 -1 12812 108 41 122 chr12 35926041 35927080 -107859375 - Tigger1 DNA MER2_type -1035 1383 261 1987 144 0 0 chr12 35927080 35927372 -107859083 + AluSx SINE Alu 1 292 -20 12812 108 41 122 chr12 35927372 35927655 -107858800 - Tigger1 DNA MER2_type -2157 261 375 2195 171 35 26 chr12 35927655 35928077 -107858378 - MSTB LTR MaLR 0 426 1 12812 108 41 122 chr12 35928077 35928425 -107858030 - Tigger1 DNA MER2_type -2042 376 1 450 141 0 0 chr12 35928428 35928499 -107857956 - L1MA9 LINE L1 -184 6128 6058 256 237 48 29 chr12 35928519 35928651 -107857804 - L1ME LINE L1 -298 5823 5687 32 43 0 0 chr12 35928919 35928965 -107857490 + AT_rich Low_complexity Low_complexity 1 46 0 1011 211 0 0 chr12 35929006 35929186 -107857269 - MER5A DNA MER1_type -7 182 3 250 343 27 34 chr12 35929366 35929512 -107856943 + MIR SINE MIR 72 216 -46 267 341 81 16 chr12 35929867 35929990 -107856465 + L2 LINE L2 3111 3241 -31 4496 211 47 15 chr12 35930559 35932526 -107853929 + L1MB7 LINE L1 4151 6184 0 32 43 0 0 chr12 35932574 35932620 -107853835 + AT_rich Low_complexity Low_complexity 1 46 0 239 351 26 9 chr12 35933620 35933734 -107852721 - MER5A DNA MER1_type -20 169 54 27 29 0 0 chr12 35934048 35934082 -107852373 + AT_rich Low_complexity Low_complexity 1 34 0 21 82 0 0 chr12 35934277 35934326 -107852129 + AT_rich Low_complexity Low_complexity 1 49 0 277 258 82 21 chr12 35935201 35935298 -107851157 + MIR SINE MIR 42 144 -64 334 301 27 22 chr12 35936711 35936894 -107849561 + L1ME LINE L1 5634 5817 -304 11835 161 85 13 chr12 35936895 35939411 -107847044 + L1MB7 LINE L1 4 2699 -3683 6964 228 55 22 chr12 35939381 35940942 -107845513 + L1MB7 LINE L1 3457 5097 -1285 * 2149 117 0 3 chr12 35940942 35941255 -107845200 + AluSx SINE Alu 5 312 0 6964 228 55 22 chr12 35941255 35941641 -107844814 + L1MB7 LINE L1 5097 5469 -913 838 210 70 11 chr12 35941848 35942157 -107844298 - MLT1A1 LTR MaLR -1 364 1 316 286 186 45 chr12 35942164 35942384 -107844071 + MIR SINE MIR 5 255 -7 31254 108 18 59 chr12 35943075 35949493 -107836962 + L1PA7 LINE L1 12 6154 0 345 212 94 0 chr12 35949870 35949955 -107836500 - L2 LINE L2 0 3313 3221 2640 199 38 19 chr12 35949955 35950583 -107835872 + L1MB7 LINE L1 5781 6420 0 233 313 45 36 chr12 35950583 35950695 -107835760 - L2 LINE L2 -8 3305 3193 1258 189 121 29 chr12 35951337 35951644 -107834811 + MLT2C1 LTR ERVL 6 340 -57 2114 178 43 0 chr12 35951682 35952139 -107834316 + HERVL LTR ERVL 1972 2443 -3321 240 184 0 0 chr12 35952139 35952188 -107834267 + (TG)n Simple_repeat Simple_repeat 2 50 0 298 319 37 44 chr12 35952195 35952330 -107834125 - MIR SINE MIR -104 158 25 22 35 0 0 chr12 35952832 35952861 -107833594 + AT_rich Low_complexity Low_complexity 1 29 0 522 0 0 0 chr12 35952980 35953038 -107833417 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 27 29 0 0 chr12 35953517 35953551 -107832904 + AT_rich Low_complexity Low_complexity 1 34 0 21 82 0 0 chr12 35953747 35953796 -107832659 + AT_rich Low_complexity Low_complexity 1 49 0 4340 221 135 21 chr12 35954781 35956509 -107829946 + L1M4 LINE L1 830 2751 -3895 320 104 21 0 chr12 35956509 35956557 -107829898 + MSTB2 LTR MaLR 408 456 -1 4194 249 82 52 chr12 35956557 35958241 -107828214 + MLT1A1-int LTR MaLR 2 1735 0 1278 207 50 94 chr12 35958241 35958622 -107827833 + MLT1A1 LTR MaLR 1 364 -1 8598 256 47 11 chr12 35958655 35961598 -107824857 + L1M4 LINE L1 2798 5845 -812 3952 178 47 25 chr12 35961606 35962436 -107824019 + L1MB5 LINE L1 5281 6134 -40 1719 183 7 10 chr12 35962436 35962731 -107823724 + AluJb SINE Alu 1 294 -18 3952 178 47 25 chr12 35962731 35962765 -107823690 + L1MB5 LINE L1 6134 6166 -8 723 266 42 55 chr12 35962848 35963137 -107823318 - LTR41 LTR ERVL -14 759 475 339 229 66 25 chr12 35963298 35963420 -107823035 - LTR41 LTR ERVL -646 127 1 543 302 57 77 chr12 35964859 35965329 -107821126 + L2 LINE L2 2853 3313 0 2322 97 0 10 chr12 35965907 35966217 -107820238 + AluSc SINE Alu 3 309 0 250 287 47 23 chr12 35966536 35966665 -107819790 - MER74B LTR ERVL -77 545 414 407 306 81 19 chr12 35967661 35967919 -107818536 + L1M4 LINE L1 2341 2614 -3532 455 245 87 21 chr12 35968120 35968406 -107818049 + L1M4 LINE L1 2860 3164 -2982 207 0 0 0 chr12 35968460 35968483 -107817972 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 1891 188 39 0 chr12 35968503 35968838 -107817617 + MER7A DNA MER2_type 1 346 0 291 220 33 33 chr12 35968838 35968920 -107817535 + L1MEc LINE L1 115 199 -6197 411 286 43 33 chr12 35969178 35969454 -107817001 + L1M4 LINE L1 3608 3886 -2260 13686 190 27 43 chr12 35969460 35972867 -107813588 + L1M1 LINE L1 13 3783 -3782 30366 105 10 32 chr12 35972875 35977034 -107809421 + L1PA7 LINE L1 1 4038 -2431 1878 149 24 0 chr12 35977034 35977323 -107809132 + AluSg SINE Alu 1 296 -14 30366 105 10 32 chr12 35977323 35979699 -107806756 + L1PA7 LINE L1 4038 6465 -4 1500 261 21 13 chr12 35979695 35980167 -107806288 + L1M1 LINE L1 3769 4244 -3321 * 2620 138 9 0 chr12 35980165 35980607 -107805848 - L1 LINE L1 -1191 4955 4510 1947 136 3 3 chr12 35980607 35980902 -107805553 - AluSx SINE Alu -12 300 6 10314 239 49 25 chr12 35980947 35981300 -107805155 - L1MB1 LINE L1 -1 7586 7243 186 43 0 0 chr12 35981300 35981323 -107805132 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 10314 239 49 25 chr12 35981323 35982566 -107803889 - L1MB1 LINE L1 -344 7243 6032 2044 116 10 3 chr12 35982566 35982858 -107803597 - AluSg SINE Alu -16 294 1 10314 239 49 25 chr12 35982858 35984217 -107802238 - L1MB1 LINE L1 -1555 6032 4708 2313 96 0 0 chr12 35984217 35984520 -107801935 - AluY SINE Alu -8 303 1 10314 239 49 25 chr12 35984520 35986488 -107799967 - L1MB1 LINE L1 -2879 4708 2531 12809 214 48 28 chr12 35986496 35987032 -107799423 + L1MA9 LINE L1 2871 3395 -4336 1151 207 4 0 chr12 35987032 35987264 -107799191 + MER46A DNA MER2_type 4 236 0 12809 214 48 28 chr12 35987264 35990473 -107795982 + L1MA9 LINE L1 3395 6758 -973 195 42 0 0 chr12 35990473 35990497 -107795958 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 12809 214 48 28 chr12 35990497 35991478 -107794977 + L1MA9 LINE L1 6758 7718 -13 1985 220 24 47 chr12 35992085 35992639 -107793816 + L1MA10 LINE L1 5787 6327 -7 23 0 0 0 chr12 35993399 35993422 -107793033 + AT_rich Low_complexity Low_complexity 1 23 0 6024 84 5 10 chr12 35993919 35995041 -107791414 - L1PA14 LINE L1 0 6161 5077 2114 133 19 32 chr12 35995041 35995410 -107791045 + THE1B LTR MaLR 1 364 0 6024 84 5 10 chr12 35995410 35996205 -107790250 - L1PA14 LINE L1 -1084 5077 4279 232 283 158 33 chr12 35996741 35996861 -107789594 + LTR50 LTR ERVL 18 152 -643 502 262 55 6 chr12 35996865 35997029 -107789426 - MER5B DNA MER1_type -2 176 5 418 318 126 35 chr12 35997161 35997422 -107789033 + LTR50 LTR ERVL 353 637 -158 260 250 24 0 chr12 35998799 35998883 -107787572 + (TA)n Simple_repeat Simple_repeat 1 86 0 267 140 35 18 chr12 36000138 36000195 -107786260 + HSMAR1 DNA Mariner 1230 1287 0 217 0 0 57 chr12 36002456 36002491 -107783964 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 37310 91 9 7 chr12 36002534 36008635 -107777820 + L1PA6 LINE L1 32 6148 -6 220 235 53 129 chr12 36010193 36010259 -107776196 + MIR SINE MIR 50 119 -143 180 0 0 0 chr12 36010259 36010279 -107776176 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1908 150 4 0 chr12 36010284 36010564 -107775891 - AluSx SINE Alu -23 289 9 220 235 53 129 chr12 36010564 36010661 -107775794 + MIR SINE MIR 123 206 -56 200 320 0 0 chr12 36010801 36010851 -107775604 - L2 LINE L2 -6 3266 3217 347 333 27 20 chr12 36010896 36011043 -107775412 - MIR3 SINE MIR -3 205 58 2155 109 7 10 chr12 36012213 36012515 -107773940 + AluSx SINE Alu 1 301 -11 210 333 245 0 chr12 36012524 36012761 -107773694 - L2 LINE L2 -775 2539 2245 893 283 71 36 chr12 36012782 36013146 -107773309 + MLT1G LTR MaLR 13 389 -201 2042 128 40 0 chr12 36013408 36013705 -107772750 + AluSg SINE Alu 1 309 -1 321 26 0 0 chr12 36015487 36015525 -107770930 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1929 132 0 11 chr12 36015688 36015993 -107770462 + AluSx SINE Alu 5 306 0 256 148 0 0 chr12 36016304 36016320 -107770135 - LTR66 LTR ERVL -156 454 439 315 0 0 0 chr12 36016320 36016355 -107770100 + (TC)n Simple_repeat Simple_repeat 2 36 0 256 148 0 0 chr12 36016355 36016399 -107770056 - LTR66 LTR ERVL -170 440 394 264 122 0 0 chr12 36016413 36016454 -107770001 + (TA)n Simple_repeat Simple_repeat 1 41 0 287 304 30 101 chr12 36016567 36016735 -107769720 - L2 LINE L2 -1 3271 3116 361 224 0 0 chr12 36017241 36017317 -107769138 - MER34C LTR ERV1 -355 230 155 284 250 46 46 chr12 36017388 36017496 -107768959 - MER57A-int LTR ERV1 -4123 3414 3307 4760 153 34 16 chr12 36017558 36018381 -107768074 - MER57A-int LTR ERV1 -6695 842 5 645 169 0 25 chr12 36018384 36018502 -107767953 - MER57A LTR ERV1 0 403 289 34 24 0 0 chr12 36019378 36019419 -107767036 + AT_rich Low_complexity Low_complexity 1 41 0 1255 65 60 5 chr12 36019440 36019624 -107766831 - L1PA7 LINE L1 -17 6137 5944 1378 142 69 88 chr12 36021010 36021327 -107765128 - AluJo SINE Alu -1 311 1 1322 70 55 5 chr12 36021795 36021996 -107764459 + L1PA7 LINE L1 5944 6154 0 229 0 54 27 chr12 36022001 36022038 -107764417 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 284 278 93 62 chr12 36022796 36022958 -107763497 - MIR SINE MIR -73 189 23 4697 193 31 34 chr12 36023274 36024749 -107761706 + L1MB2 LINE L1 4143 5613 -558 1985 160 24 3 chr12 36024751 36025083 -107761372 + MER7A DNA MER2_type 3 339 -7 2545 180 75 0 chr12 36025084 36025606 -107760849 + L1MB2 LINE L1 5611 6171 0 2596 139 24 5 chr12 36026417 36026835 -107759620 - MSTB LTR MaLR 0 426 1 223 233 101 101 chr12 36026929 36027058 -107759397 - L2 LINE L2 -40 3273 3145 1509 277 105 44 chr12 36027374 36028261 -107758194 + L2 LINE L2 2333 3263 -50 2223 88 62 0 chr12 36028295 36028615 -107757840 + L1PA16 LINE L1 5818 6157 -9 228 269 0 0 chr12 36030026 36030078 -107756377 + MER94 DNA DNA 1 52 -82 22 35 0 0 chr12 36031326 36031355 -107755100 + AT_rich Low_complexity Low_complexity 1 29 0 4097 240 64 58 chr12 36031355 36031977 -107754478 - L1ME1 LINE L1 0 6291 5674 2143 120 47 33 chr12 36031977 36032336 -107754119 + THE1B LTR MaLR 1 364 0 11024 98 28 1 chr12 36032336 36033874 -107752581 + THE1B-int LTR MaLR 1 1580 0 2071 111 62 28 chr12 36033874 36034226 -107752229 + THE1B LTR MaLR 1 364 0 4097 240 64 58 chr12 36034226 36036140 -107750315 - L1ME1 LINE L1 -616 5675 3786 21 57 0 0 chr12 36036503 36036538 -107749917 + AT_rich Low_complexity Low_complexity 1 35 0 767 186 4 31 chr12 36036542 36036753 -107749702 - L1MC/D LINE L1 -710 5456 5257 1845 182 22 71 chr12 36037934 36038148 -107748307 - MER31A LTR ERV1 0 485 262 3328 87 11 4 chr12 36038148 36038598 -107747857 + MLT2A2 LTR ERVL 1 453 0 1845 182 22 71 chr12 36038598 36038893 -107747562 - MER31A LTR ERV1 -223 262 1 1621 204 39 75 chr12 36038944 36039360 -107747095 + LTR8 LTR ERV1 1 401 -290 320 356 49 0 chr12 36039421 36039584 -107746871 + MIR SINE MIR 82 252 -10 377 317 60 49 chr12 36040087 36040270 -107746185 + MER5A DNA MER1_type 5 189 0 318 283 22 16 chr12 36041432 36041538 -107744917 + MIR SINE MIR 13 118 -90 21 0 0 0 chr12 36042150 36042171 -107744284 + AT_rich Low_complexity Low_complexity 1 21 0 303 250 0 0 chr12 36042300 36042364 -107744091 - MIR SINE MIR -78 184 121 1415 146 35 17 chr12 36042417 36042925 -107743530 - LTR36 LTR ERV1 -30 581 9 1708 302 47 39 chr12 36042965 36043959 -107742496 + L1MA5 LINE L1 1 1910 -5299 1156 180 40 0 chr12 36043954 36044226 -107742229 + L1MA5 LINE L1 4016 4298 -2910 * 6350 142 15 26 chr12 36044233 36045712 -107740743 + L1MA5 LINE L1 5903 7357 -5 1846 142 45 54 chr12 36046041 36046693 -107739762 - Tigger3b DNA MER2_type -506 726 2 642 196 0 0 chr12 36046696 36046808 -107739647 - MLT1E3 LTR MaLR -504 120 9 24 32 0 0 chr12 36046893 36046924 -107739531 + AT_rich Low_complexity Low_complexity 1 31 0 198 224 41 20 chr12 36047870 36047919 -107738536 - L2 LINE L2 -13 3259 3210 575 289 63 20 chr12 36048149 36048499 -107737956 - L1M4 LINE L1 -2445 3701 3337 1743 149 54 69 chr12 36048693 36049101 -107737354 - L1MA9 LINE L1 0 6312 5911 6208 161 10 3 chr12 36049101 36051249 -107735206 + L1PB1 LINE L1 3985 6149 -2 262 113 19 19 chr12 36051675 36051728 -107734727 + (TA)n Simple_repeat Simple_repeat 1 53 0 550 157 0 29 chr12 36051829 36051931 -107734524 + Tigger5 DNA MER2_type 2225 2323 0 23 54 0 0 chr12 36052021 36052058 -107734397 + AT_rich Low_complexity Low_complexity 1 37 0 240 258 0 0 chr12 36052635 36052701 -107733754 - LTR37B LTR ERV1 -166 302 237 1484 251 84 25 chr12 36052736 36053211 -107733244 - LTR40a LTR ERVL -1 518 16 884 266 58 9 chr12 36053217 36053543 -107732912 - HERVL40 LTR ERVL -11 5519 2786 428 330 27 0 chr12 36053582 36053770 -107732685 - MER89-int LTR ERV1 -491 6310 6118 2040 286 58 30 chr12 36054520 36055508 -107730947 - HERVL40 LTR ERVL -882 4648 3603 706 224 25 151 chr12 36055514 36056024 -107730431 + L1M3 LINE L1 2884 3329 -2817 592 132 11 0 chr12 36056030 36056121 -107730334 + U6 snRNA snRNA 12 103 -4 14051 179 14 24 chr12 36056123 36059933 -107726522 + L1PA13 LINE L1 2397 6163 0 2219 228 18 21 chr12 36059936 36060551 -107725904 + L1M3 LINE L1 3332 3944 -2202 1538 196 9 22 chr12 36060554 36061089 -107725366 + L1M3 LINE L1 4992 5519 -661 25 75 0 0 chr12 36061155 36061208 -107725247 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr12 36061318 36061339 -107725116 + AT_rich Low_complexity Low_complexity 1 21 0 535 343 33 0 chr12 36063656 36063837 -107722618 - MIR SINE MIR -70 192 6 440 354 109 30 chr12 36064141 36064537 -107721918 + L2 LINE L2 2887 3313 0 2322 42 24 0 chr12 36065261 36065549 -107720906 - AluY SINE Alu -16 295 1 330 411 31 8 chr12 36067562 36067691 -107718764 - L2 LINE L2 -7 3265 3134 21 36 0 0 chr12 36067710 36067738 -107718717 + AT_rich Low_complexity Low_complexity 1 28 0 213 227 0 0 chr12 36067741 36067785 -107718670 - L2 LINE L2 0 3313 3270 2210 280 84 51 chr12 36068612 36069780 -107716675 - L2 LINE L2 -78 3235 2032 623 359 31 34 chr12 36071233 36071615 -107714840 - L2 LINE L2 -920 2394 2014 549 343 37 59 chr12 36071667 36072203 -107714252 - L2 LINE L2 -8 3264 2749 262 318 161 5 chr12 36072230 36072276 -107714179 - L2 LINE L2 -1226 2088 2051 342 45 0 0 chr12 36072276 36072320 -107714135 + (CA)n Simple_repeat Simple_repeat 2 45 0 262 318 161 5 chr12 36072320 36072465 -107713990 - L2 LINE L2 -1263 2051 1867 255 242 209 13 chr12 36073221 36073374 -107713081 - L2 LINE L2 -4 3309 3127 937 320 79 46 chr12 36073678 36074275 -107712180 - L2 LINE L2 -40 3273 2697 441 254 73 49 chr12 36074275 36074480 -107711975 + MER63A DNA MER1_type 1 210 0 937 320 79 46 chr12 36074480 36074678 -107711777 - L2 LINE L2 -616 2697 2507 2153 196 31 17 chr12 36074678 36075157 -107711298 + MER66B LTR ERV1 1 486 0 937 320 79 46 chr12 36075157 36075367 -107711088 - L2 LINE L2 -806 2507 2222 412 335 55 15 chr12 36076149 36076349 -107710106 + Charlie8 DNA MER1_type 6 213 -2204 2268 176 21 32 chr12 36076408 36076874 -107709581 + MER65C LTR ERV1 1 461 0 296 197 0 56 chr12 36076947 36077018 -107709437 + Charlie8 DNA MER1_type 1345 1411 -1006 403 237 98 127 chr12 36077334 36077486 -107708969 - LTR50 LTR ERVL -24 771 627 2033 128 0 4 chr12 36077486 36077767 -107708688 + AluSx SINE Alu 1 280 -32 403 237 98 127 chr12 36077767 36077859 -107708596 - LTR50 LTR ERVL -168 627 534 272 129 0 29 chr12 36077859 36077929 -107708526 + (GAAA)n Simple_repeat Simple_repeat 2 69 0 1144 208 216 31 chr12 36077934 36078420 -107708035 - LTR50 LTR ERVL -213 582 7 301 312 70 50 chr12 36078604 36079007 -107707448 - MLT1J LTR MaLR -58 453 9 359 289 22 0 chr12 36079701 36079791 -107706664 + L2 LINE L2 3181 3272 0 243 65 0 0 chr12 36080973 36081004 -107705451 + L1PBa LINE L1 2929 2959 -3904 371 322 159 56 chr12 36081210 36081892 -107704563 - L2 LINE L2 -213 3059 2300 2809 271 84 36 chr12 36083084 36084411 -107702044 + L1MEc LINE L1 37 1426 -4970 1145 261 73 0 chr12 36084418 36084842 -107701613 + L1MEc LINE L1 2178 2595 -3620 1203 241 26 9 chr12 36084852 36085201 -107701254 + L1MEc LINE L1 2639 2993 -3222 622 257 22 64 chr12 36085333 36085771 -107700684 + L1ME1 LINE L1 5760 6331 -3 335 341 24 0 chr12 36086271 36086394 -107700061 + L2 LINE L2 3188 3313 0 192 77 0 0 chr12 36086454 36086480 -107699975 + (CAG)n Simple_repeat Simple_repeat 1 26 0 252 396 29 39 chr12 36086702 36086909 -107699546 + L2 LINE L2 2745 2949 -365 2291 66 26 7 chr12 36086915 36087220 -107699235 - AluY SINE Alu 0 311 1 216 250 0 0 chr12 36087309 36087349 -107699106 + (CA)n Simple_repeat Simple_repeat 2 41 0 25 0 0 0 chr12 36087808 36087833 -107698622 + AT_rich Low_complexity Low_complexity 1 25 0 195 190 0 0 chr12 36087833 36087891 -107698564 + (TA)n Simple_repeat Simple_repeat 2 59 0 255 141 14 28 chr12 36087924 36087995 -107698460 + CT-rich Low_complexity Low_complexity 1 70 0 2218 104 36 28 chr12 36088887 36089243 -107697212 + THE1B LTR MaLR 3 361 -3 1574 86 0 5 chr12 36090157 36090377 -107696078 - L1PA7 LINE L1 -2 6152 5934 224 366 113 32 chr12 36090527 36090713 -107695742 - MIR3 SINE MIR -3 205 5 6782 68 6 1 chr12 36092426 36093370 -107693085 + L1PA7 LINE L1 5206 6153 -1 1173 147 32 0 chr12 36095228 36095446 -107691009 + L1MA8 LINE L1 6065 6289 -2 1845 249 83 25 chr12 36095459 36096106 -107690349 + L1MC4 LINE L1 7185 7869 -173 244 285 31 54 chr12 36096823 36096953 -107689502 + L2 LINE L2 2199 2325 -989 2528 102 11 6 chr12 36097124 36097486 -107688969 + THE1B LTR MaLR 1 364 0 9791 124 21 31 chr12 36097486 36098245 -107688210 + THE1B-int LTR MaLR 1 766 -814 2304 62 0 80 chr12 36098245 36098582 -107687873 + AluY SINE Alu 1 310 -1 9791 124 21 31 chr12 36098582 36099418 -107687037 + THE1B-int LTR MaLR 766 1580 0 2337 106 49 9 chr12 36099420 36099768 -107686687 + THE1B LTR MaLR 3 364 0 382 339 45 38 chr12 36101201 36101490 -107684965 + L1MEd LINE L1 670 960 -5159 843 129 0 43 chr12 36101617 36101756 -107684699 + FLAM_C SINE Alu 1 133 0 283 328 30 38 chr12 36101842 36101973 -107684482 - MIR SINE MIR -73 189 60 877 251 122 57 chr12 36102502 36102920 -107683535 - LTR16A1 LTR ERVL -5 452 8 1757 129 85 0 chr12 36103700 36103972 -107682483 + AluSx SINE Alu 1 295 -17 32 57 0 0 chr12 36104224 36104277 -107682178 + AT_rich Low_complexity Low_complexity 1 53 0 296 332 90 41 chr12 36104539 36104807 -107681648 + L3 LINE CR1 1011 1291 -286 369 62 0 0 chr12 36104905 36104953 -107681502 + (TG)n Simple_repeat Simple_repeat 1 48 0 334 299 46 0 chr12 36105047 36105134 -107681321 - L2 LINE L2 -15 3298 3208 27 81 0 0 chr12 36106019 36106081 -107680374 + AT_rich Low_complexity Low_complexity 1 62 0 430 36 0 0 chr12 36106249 36106305 -107680150 + L1PA6 LINE L1 6099 6154 0 770 100 15 8 chr12 36106314 36106444 -107680011 + L1PA13 LINE L1 6026 6156 -7 1753 158 22 4 chr12 36106480 36106753 -107679702 + AluJb SINE Alu 1 278 -34 2183 99 0 7 chr12 36106780 36107073 -107679382 - AluSp SINE Alu -22 291 1 421 283 158 0 chr12 36107814 36107991 -107678464 - MIR SINE MIR -48 214 10 257 329 88 60 chr12 36108101 36108317 -107678138 - L2 LINE L2 -37 3235 3014 1154 128 30 0 chr12 36108341 36108544 -107677911 - L1MA8 LINE L1 -7 6284 6076 335 106 76 15 chr12 36108544 36108610 -107677845 + L1M2 LINE L1 5747 5816 -484 536 365 63 34 chr12 36108610 36109280 -107677175 - L2 LINE L2 -254 3018 2254 885 256 84 12 chr12 36109337 36109658 -107676797 - MER2 DNA MER2_type 0 344 1 307 283 22 7 chr12 36110464 36110602 -107675853 + (TA)n Simple_repeat Simple_repeat 1 140 0 2092 50 7 28 chr12 36112251 36112533 -107673922 + AluY SINE Alu 35 310 -1 2260 101 3 0 chr12 36113160 36113467 -107672988 + AluSg SINE Alu 1 308 -2 378 346 21 16 chr12 36114272 36114460 -107671995 + MER89-int LTR ERV1 2017 2205 -2442 322 301 120 0 chr12 36114879 36115012 -107671443 + MER89-int LTR ERV1 4988 5136 -1665 2471 61 0 0 chr12 36115401 36115697 -107670758 + AluY SINE Alu 1 296 -15 1342 179 50 36 chr12 36115941 36116245 -107670210 + AluJb SINE Alu 1 308 0 2218 85 0 0 chr12 36116739 36117067 -107669388 + AluY SINE Alu 1 328 0 225 0 0 0 chr12 36117310 36117335 -107669120 + (T)n Simple_repeat Simple_repeat 1 25 0 781 95 0 0 chr12 36117335 36117451 -107669004 - LTR9B LTR ERV1 -84 560 445 873 262 103 59 chr12 36117845 36118363 -107668092 - L2 LINE L2 -1 3312 2776 22 70 0 0 chr12 36118490 36118533 -107667922 + AT_rich Low_complexity Low_complexity 1 43 0 527 267 64 32 chr12 36118797 36118880 -107667575 + MIR SINE MIR 70 149 -113 3093 156 135 5 chr12 36118880 36119502 -107666953 + MER39 LTR ERV1 1 703 -4 527 267 64 32 chr12 36119502 36119605 -107666850 + MIR SINE MIR 149 262 0 28 91 0 0 chr12 36120601 36120678 -107665777 + AT_rich Low_complexity Low_complexity 1 77 0 2120 238 79 4 chr12 36122755 36123460 -107662995 - L1M4 LINE L1 -2886 3260 2503 252 262 60 0 chr12 36123848 36123932 -107662523 + L1ME LINE L1 5738 5826 -295 21 0 0 0 chr12 36124014 36124035 -107662420 + AT_rich Low_complexity Low_complexity 1 21 0 471 320 39 28 chr12 36124498 36124676 -107661779 + MIR SINE MIR 12 191 -71 22 70 0 0 chr12 36124872 36124915 -107661540 + AT_rich Low_complexity Low_complexity 1 43 0 212 278 14 0 chr12 36125452 36125524 -107660931 + (TA)n Simple_repeat Simple_repeat 2 74 0 339 285 33 53 chr12 36126425 36126576 -107659879 + L1MEc LINE L1 1508 1655 -4741 302 279 47 0 chr12 36126629 36126758 -107659697 + L1MEc LINE L1 1669 1803 -4593 21 0 0 0 chr12 36127238 36127259 -107659196 + AT_rich Low_complexity Low_complexity 1 21 0 1807 83 34 19 chr12 36127530 36127796 -107658659 - L1PA7 LINE L1 -1 6153 5884 3395 131 22 16 chr12 36128431 36128980 -107657475 - L1PA15 LINE L1 -8 6157 5606 405 350 21 7 chr12 36128985 36129128 -107657327 - MIR3 SINE MIR -62 146 2 1554 225 40 0 chr12 36129197 36129548 -107656907 + MLT1A1 LTR MaLR 1 365 0 325 254 164 30 chr12 36130087 36130252 -107656203 + MER5A DNA MER1_type 1 187 -2 27 29 0 0 chr12 36130292 36130326 -107656129 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr12 36130342 36130371 -107656084 + AT_rich Low_complexity Low_complexity 1 29 0 315 339 39 39 chr12 36130923 36131050 -107655405 + LTR67 LTR ERVL 98 224 -333 3139 201 10 63 chr12 36131840 36132566 -107653889 - LTR8 LTR ERV1 -3 688 2 3014 40 0 21 chr12 36132568 36132948 -107653507 - L1PA5 LINE L1 0 6154 5783 325 250 134 0 chr12 36133180 36133292 -107653163 + L2 LINE L2 3183 3309 -4 293 370 55 8 chr12 36133299 36133426 -107653029 + MER5A DNA MER1_type 56 188 -1 1866 160 35 0 chr12 36133471 36133759 -107652696 + AluSx SINE Alu 1 298 -14 757 279 50 46 chr12 36133793 36134116 -107652339 - MER93a LTR ERV1 -4 398 75 289 260 62 45 chr12 36134456 36134633 -107651822 - MER93b-int LTR ERV1 -667 7149 6970 22344 137 12 21 chr12 36135039 36139670 -107646785 + L1PA13 LINE L1 1575 6163 0 2269 223 18 21 chr12 36139673 36140288 -107646167 + L1M3 LINE L1 3332 3944 -2202 1538 196 9 22 chr12 36140291 36140826 -107645629 + L1M3 LINE L1 4992 5519 -661 25 75 0 0 chr12 36140892 36140945 -107645510 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr12 36141055 36141076 -107645379 + AT_rich Low_complexity Low_complexity 1 21 0 535 343 33 0 chr12 36143394 36143575 -107642880 - MIR SINE MIR -70 192 6 421 354 109 30 chr12 36143879 36144275 -107642180 + L2 LINE L2 2887 3313 0 228 300 0 0 chr12 36144969 36145029 -107641426 + L2 LINE L2 2995 3054 -259 292 247 113 73 chr12 36145165 36145315 -107641140 + Charlie4 DNA MER1_type 3 158 -1803 1703 161 22 4 chr12 36146040 36146313 -107640142 + AluJb SINE Alu 1 278 -34 441 100 0 0 chr12 36146340 36146400 -107640055 - AluSp/q SINE Alu -22 291 232 1016 206 186 92 chr12 36147565 36148139 -107638316 - MER93b-int LTR ERV1 -203 4733 4106 2478 54 0 0 chr12 36148140 36148436 -107638019 + AluY SINE Alu 1 296 -15 1870 222 27 32 chr12 36148477 36149052 -107637403 - MER93b-int LTR ERV1 -1189 3747 3306 1900 209 124 107 chr12 36149078 36150111 -107636344 - MER93b-int LTR ERV1 -1786 3150 2100 2460 139 21 28 chr12 36150140 36150573 -107635882 + LTR10D LTR ERV1 84 513 0 633 219 5 37 chr12 36150697 36150884 -107635571 - MER93b-int LTR ERV1 -3072 1864 1684 381 171 92 53 chr12 36150979 36151131 -107635324 - MER93b-int LTR ERV1 -3140 3123 1476 21 57 0 0 chr12 36151165 36151200 -107635255 + AT_rich Low_complexity Low_complexity 1 35 0 285 107 92 0 chr12 36151200 36151331 -107635124 + (TA)n Simple_repeat Simple_repeat 1 143 0 382 220 99 42 chr12 36151335 36151560 -107634895 - MER93b-int LTR ERV1 -3771 1165 884 385 246 30 72 chr12 36152453 36152620 -107633835 - MER93b-int LTR ERV1 -7287 250 91 2645 42 0 0 chr12 36152621 36152932 -107633523 + AluY SINE Alu 1 311 0 525 287 65 19 chr12 36153051 36153267 -107633188 - MER93b LTR ERV1 -4 369 144 2308 81 13 0 chr12 36153269 36153576 -107632879 + AluSp SINE Alu 1 311 -2 312 288 81 0 chr12 36154447 36154558 -107631897 - L1ME LINE L1 -578 5584 5465 480 306 102 59 chr12 36154750 36155074 -107631381 - L1ME LINE L1 -2214 3932 3595 603 262 96 109 chr12 36155250 36155883 -107630572 - MLT2E LTR ERVL -3 625 1 445 299 76 82 chr12 36155907 36156563 -107629892 - L1M4 LINE L1 -2393 3753 3102 1938 253 50 30 chr12 36156959 36157361 -107629094 - L1ME3 LINE L1 -1 6161 5739 1909 174 50 31 chr12 36157361 36157781 -107628674 + MSTC LTR MaLR 1 428 0 1938 253 50 30 chr12 36157781 36158042 -107628413 - L1ME3 LINE L1 -423 5739 5485 225 304 0 43 chr12 36158058 36158127 -107628328 - MIR SINE MIR -1 261 196 1977 253 51 38 chr12 36158314 36159057 -107627398 - L1ME3A LINE L1 -111 6059 5307 1704 233 111 93 chr12 36159064 36160186 -107626269 - L1ME3A LINE L1 -913 5233 4092 372 237 126 35 chr12 36160186 36160384 -107626071 - L1ME3A LINE L1 -3449 2697 2482 245 224 30 0 chr12 36160384 36160451 -107626004 + L1MC4 LINE L1 6637 6705 -1337 299 363 34 7 chr12 36160741 36160887 -107625568 - L2 LINE L2 -678 2636 2487 363 297 225 10 chr12 36162213 36162422 -107624033 - MIR SINE MIR -2 260 7 1206 237 73 111 chr12 36163535 36163587 -107622868 + MLT1F1 LTR MaLR 3 55 -512 2394 82 0 0 chr12 36163587 36163880 -107622575 - AluSg SINE Alu -15 295 3 1206 237 73 111 chr12 36163880 36164091 -107622364 + MLT1F1 LTR MaLR 55 272 -295 1241 228 93 22 chr12 36164091 36164455 -107622000 - MLT1B LTR MaLR 0 390 1 1206 237 73 111 chr12 36164455 36164751 -107621704 + MLT1F1 LTR MaLR 272 567 0 246 275 35 106 chr12 36164841 36164884 -107621571 + LTR16A1 LTR ERVL 4 48 -409 1912 127 3 29 chr12 36164884 36165199 -107621256 - AluSx SINE Alu -5 307 1 246 275 35 106 chr12 36165199 36165297 -107621158 + LTR16A1 LTR ERVL 48 135 -322 326 61 20 0 chr12 36166546 36166595 -107619860 + (TG)n Simple_repeat Simple_repeat 2 51 0 1769 119 48 7 chr12 36168042 36168311 -107618144 + AluSx SINE Alu 28 307 -5 29 0 0 0 chr12 36168446 36168475 -107617980 + AT_rich Low_complexity Low_complexity 1 29 0 383 256 69 115 chr12 36169033 36169381 -107617074 - HAL1 LINE L1 -1233 1274 943 888 248 40 25 chr12 36170568 36170842 -107615613 + L1ME1 LINE L1 5614 5891 -275 224 304 38 25 chr12 36171031 36171110 -107615345 + L2 LINE L2 3185 3264 -8 1610 234 56 14 chr12 36171139 36171659 -107614796 + MLT1E LTR MaLR 13 585 -8 250 62 62 42 chr12 36171911 36171959 -107614496 + L1PA13 LINE L1 6114 6162 -1 184 333 64 0 chr12 36172441 36172519 -107613936 + MIR SINE MIR 102 184 -78 1811 132 53 4 chr12 36174732 36175013 -107611442 - AluJb SINE Alu -17 295 1 674 139 80 94 chr12 36176094 36176140 -107610315 + LTR37A LTR ERV1 1 46 -380 2474 47 0 3 chr12 36176140 36176441 -107610014 - AluY SINE Alu -11 300 1 674 139 80 94 chr12 36176441 36176595 -107609860 + LTR37A LTR ERV1 46 198 -228 1386 207 85 0 chr12 36176627 36176955 -107609500 + MER67C LTR ERV1 9 364 -346 213 290 0 32 chr12 36177093 36177155 -107609300 + CT-rich Low_complexity Low_complexity 5 64 0 4023 102 11 86 chr12 36177237 36177955 -107608500 + MER4A LTR ERV1 1 664 0 371 165 63 0 chr12 36178891 36178970 -107607485 - MER34 LTR ERV1 -1 541 458 299 196 0 0 chr12 36178964 36179015 -107607440 - MER39 LTR ERV1 -656 51 1 * 22 0 0 0 chr12 36179138 36179160 -107607295 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr12 36179504 36179543 -107606912 + AT_rich Low_complexity Low_complexity 1 39 0 253 265 75 35 chr12 36180194 36180394 -107606061 - L1ME4a LINE L1 -4 6117 5910 230 229 0 105 chr12 36180446 36180551 -107605904 - L1ME4a LINE L1 -213 5908 5815 2196 117 0 0 chr12 36180622 36180920 -107605535 - AluSq SINE Alu -15 298 1 395 253 0 0 chr12 36180926 36181017 -107605438 - L1ME4a LINE L1 -512 5609 5519 508 269 48 18 chr12 36181402 36181569 -107604886 + MLT1I LTR MaLR 3 174 -235 233 342 56 25 chr12 36181605 36181766 -107604689 + MLT1I LTR MaLR 244 409 0 3481 91 5 58 chr12 36182213 36182785 -107603670 + L1PA13 LINE L1 5620 6161 -2 311 250 93 73 chr12 36182789 36182962 -107603493 + MLT1G LTR MaLR 114 354 -236 1088 172 22 18 chr12 36182962 36183189 -107603266 - L1MB3 LINE L1 0 6183 5956 311 250 93 73 chr12 36183189 36183274 -107603181 + MLT1G LTR MaLR 354 436 -154 801 161 23 0 chr12 36183721 36183851 -107602604 + FLAM_C SINE Alu 1 133 -10 520 325 61 39 chr12 36184130 36184490 -107601965 + MLT1I LTR MaLR 42 409 0 1712 187 36 17 chr12 36185272 36185630 -107600825 - MLT1A1 LTR MaLR 0 365 1 206 277 0 31 chr12 36186543 36186608 -107599847 - L2 LINE L2 -1896 1418 1356 24 67 0 0 chr12 36187169 36187214 -107599241 + AT_rich Low_complexity Low_complexity 1 45 0 6705 135 7 16 chr12 36187219 36187394 -107599061 - L1MA2 LINE L1 0 6304 6129 2348 109 0 3 chr12 36187394 36187707 -107598748 - AluSp SINE Alu -1 312 1 6705 135 7 16 chr12 36187707 36189611 -107596844 - L1MA2 LINE L1 -175 6129 4243 1891 208 20 3 chr12 36189621 36189977 -107596478 - LTR3 LTR ERVK -70 362 1 371 167 0 15 chr12 36189991 36190057 -107596398 - HERVK14 LTR ERVK -61 5884 5820 1089 183 5 5 chr12 36190073 36190286 -107596169 - HERVK14 LTR ERVK -1758 5485 5273 586 114 0 0 chr12 36190287 36190375 -107596080 - AluY SINE Alu -223 88 1 481 244 25 8 chr12 36190376 36190495 -107595960 - L1MCa LINE L1 -4244 2182 2062 252 0 0 0 chr12 36191399 36191427 -107595028 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 273 262 130 63 chr12 36191967 36192260 -107594195 + Charlie8 DNA MER1_type 26 1428 -989 327 342 58 64 chr12 36193161 36193538 -107592917 + HAL1b LINE L1 538 912 -436 324 241 61 70 chr12 36194327 36194555 -107591900 + L1M4 LINE L1 2784 3009 -3137 21 57 0 0 chr12 36194575 36194610 -107591845 + AT_rich Low_complexity Low_complexity 1 35 0 439 268 31 31 chr12 36194610 36194737 -107591718 + L2 LINE L2 3187 3313 0 257 204 0 17 chr12 36195052 36195128 -107591327 + L1M4 LINE L1 5771 5845 -319 * 978 241 159 25 chr12 36195124 36195623 -107590832 + L1ME3 LINE L1 5270 5838 -324 383 320 125 0 chr12 36195638 36195838 -107590617 + L1ME3 LINE L1 5898 6122 -40 1844 245 26 32 chr12 36195953 36196491 -107589964 + L1ME1 LINE L1 5614 6148 -18 292 188 14 14 chr12 36196527 36196596 -107589859 + L1MA10 LINE L1 6236 6304 -30 * 1788 181 58 17 chr12 36196594 36197203 -107589252 - L1ME LINE L1 -626 5540 4902 261 155 17 17 chr12 36197207 36197265 -107589190 + L1ME3A LINE L1 6111 6168 -2 350 301 143 36 chr12 36198195 36198391 -107588064 + L1MC/D LINE L1 5509 5725 -2083 195 129 0 0 chr12 36198407 36198438 -107588017 + (GGAA)n Simple_repeat Simple_repeat 1 31 0 304 297 54 9 chr12 36199931 36200042 -107586413 + MIR3 SINE MIR 89 204 -4 395 236 27 0 chr12 36200148 36200258 -107586197 - L1MC5 LINE L1 -48 7913 7801 625 249 121 8 chr12 36200296 36200545 -107585910 - L1MB8 LINE L1 -8 6170 5894 30 45 0 0 chr12 36201415 36201459 -107584996 + AT_rich Low_complexity Low_complexity 1 44 0 269 324 61 56 chr12 36202623 36202836 -107583619 - MIR SINE MIR -48 214 1 22 0 0 0 chr12 36202944 36202966 -107583489 + AT_rich Low_complexity Low_complexity 1 22 0 294 327 53 68 chr12 36203125 36203464 -107582991 - L2 LINE L2 -498 2816 2483 2158 119 0 0 chr12 36205716 36206010 -107580445 - AluSg SINE Alu -16 294 1 864 303 56 25 chr12 36206103 36206548 -107579907 - L1MEc LINE L1 -4583 1813 1355 719 208 63 79 chr12 36206543 36206923 -107579532 - L1MEc LINE L1 -3933 2463 2090 * 521 329 123 5 chr12 36207333 36207916 -107578539 - L1M4 LINE L1 -1198 4948 4297 211 225 0 0 chr12 36207997 36208037 -107578418 + (CATA)n Simple_repeat Simple_repeat 3 42 0 27 0 0 0 chr12 36209006 36209033 -107577422 + AT_rich Low_complexity Low_complexity 1 27 0 1487 60 0 37 chr12 36211859 36212075 -107574380 + L1PA5 LINE L1 5943 6150 -4 2561 174 131 30 chr12 36212253 36212857 -107573598 + MER39 LTR ERV1 16 680 -27 389 261 92 46 chr12 36214431 36214584 -107571871 - MER5B DNA MER1_type 0 178 19 330 277 47 61 chr12 36214584 36214732 -107571723 - MER5B DNA MER1_type -26 152 7 27 0 0 0 chr12 36214964 36214991 -107571464 + AT_rich Low_complexity Low_complexity 1 27 0 1125 229 100 32 chr12 36215059 36215430 -107571025 - MSTD LTR MaLR 0 396 1 256 312 13 0 chr12 36215452 36215529 -107570926 - MIR SINE MIR -57 151 74 2232 116 0 0 chr12 36216501 36216804 -107569651 - AluSx SINE Alu -9 303 1 276 236 14 28 chr12 36217319 36217391 -107569064 - L2 LINE L2 0 3313 3243 288 130 0 0 chr12 36218426 36218472 -107567983 + (CA)n Simple_repeat Simple_repeat 1 46 0 17197 127 8 3 chr12 36218746 36222258 -107564197 - L1PA8A LINE L1 -3 6128 2604 598 179 0 0 chr12 36222258 36222353 -107564102 - LTR12 LTR ERV1 -261 453 359 272 240 80 0 chr12 36222353 36222428 -107564027 - LTR30 LTR ERV1 -98 624 544 660 132 26 180 chr12 36222428 36222669 -107563786 - LTR12 LTR ERV1 -437 1523 100 232 269 0 0 chr12 36222669 36222721 -107563734 - LTR30 LTR ERV1 -670 52 1 8553 203 6 29 chr12 36222722 36224410 -107562045 - L1P LINE L1 -3506 2640 1003 216 67 0 0 chr12 36224410 36224440 -107562015 + (TTG)n Simple_repeat Simple_repeat 1 30 0 8553 203 6 29 chr12 36224440 36224740 -107561715 - L1P LINE L1 -5143 1003 698 198 428 113 17 chr12 36226799 36227152 -107559303 + L2 LINE L2 2871 3257 -15 225 0 0 0 chr12 36227152 36227177 -107559278 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 193 148 0 0 chr12 36227390 36227417 -107559038 - L2 LINE L2 -20 3293 3267 22 0 0 0 chr12 36227453 36227475 -107558980 + AT_rich Low_complexity Low_complexity 1 22 0 872 238 155 26 chr12 36228441 36228937 -107557518 - L1MCa LINE L1 -5056 1885 1326 1800 191 36 3 chr12 36228987 36229374 -107557081 - L1MB4 LINE L1 0 6180 5781 217 143 36 18 chr12 36229374 36229424 -107557031 + (TA)n Simple_repeat Simple_repeat 1 51 0 328 241 46 11 chr12 36229427 36229514 -107556941 + L1MC4 LINE L1 6613 6702 -1340 317 207 0 0 chr12 36229516 36229574 -107556881 - L1MB4 LINE L1 -384 5787 5730 631 271 98 11 chr12 36229583 36229849 -107556606 - L1MCa LINE L1 -5156 1267 979 11613 214 54 35 chr12 36230100 36230542 -107555913 + L1MA9 LINE L1 2983 3415 -4150 16200 25 1 0 chr12 36230542 36233221 -107553234 + L1PA2 LINE L1 3476 6155 0 11613 214 54 35 chr12 36233221 36233377 -107553078 + L1MA9 LINE L1 3415 3567 -3998 198 0 0 0 chr12 36233377 36233399 -107553056 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 11613 214 54 35 chr12 36233399 36236108 -107550347 + L1MA9 LINE L1 3567 6364 -1201 1794 161 0 7 chr12 36236108 36236420 -107550035 + AluSx SINE Alu 1 310 0 11613 214 54 35 chr12 36236420 36236835 -107549620 + L1MA9 LINE L1 6364 6770 -795 256 167 0 20 chr12 36236860 36236925 -107549530 + L1MA9 LINE L1 7315 7375 -335 242 128 0 0 chr12 36236942 36236981 -107549474 + L1MB1 LINE L1 5943 5981 -208 586 155 86 0 chr12 36236981 36237097 -107549358 + L1MA9 LINE L1 7362 7487 -244 1909 164 137 8 chr12 36237248 36237627 -107548828 + MSTA LTR MaLR 1 428 0 9009 146 23 24 chr12 36237629 36239209 -107547246 + MSTA-int LTR MaLR 3 1580 0 1283 187 83 37 chr12 36239209 36239557 -107546898 + THE1B LTR MaLR 1 364 0 333 325 69 75 chr12 36239902 36240278 -107546177 - L1MC4a LINE L1 -1908 5900 5527 204 261 0 15 chr12 36240571 36240636 -107545819 + CT-rich Low_complexity Low_complexity 2 65 0 1675 126 103 0 chr12 36242320 36242582 -107543873 + AluSc SINE Alu 1 289 -20 237 170 64 11 chr12 36244924 36245018 -107541437 + (TA)n Simple_repeat Simple_repeat 2 100 0 678 169 40 0 chr12 36245019 36245167 -107541288 + L1M LINE L1 5269 5422 -742 7294 41 1 1 chr12 36246241 36247370 -107539085 + L1PA4 LINE L1 5025 6153 -2 332 321 123 48 chr12 36247463 36247796 -107538659 - L1MC4a LINE L1 -1161 4985 4628 544 246 42 0 chr12 36247897 36248015 -107538440 + L1MD2 LINE L1 6000 6122 -237 5696 158 11 5 chr12 36248256 36249236 -107537219 - L1MC1 LINE L1 -9 6324 5339 2776 150 62 0 chr12 36249455 36249894 -107536561 + LTR28 LTR ERV1 1 466 -554 565 198 10 0 chr12 36249892 36249993 -107536462 + LTR28 LTR ERV1 919 1020 0 * 234 189 24 55 chr12 36251193 36251320 -107535135 + (TATAA)n Simple_repeat Simple_repeat 5 127 0 27 29 0 0 chr12 36252415 36252449 -107534006 + AT_rich Low_complexity Low_complexity 1 34 0 2113 130 3 0 chr12 36252596 36252895 -107533560 - AluY SINE Alu -11 300 1 834 257 11 42 chr12 36253328 36253593 -107532862 + MER46C DNA MER2_type 66 322 -16 323 331 31 8 chr12 36253822 36253952 -107532503 + L2 LINE L2 2670 2802 -512 254 381 32 16 chr12 36253989 36254178 -107532277 + L2 LINE L2 2857 3048 -224 5671 146 31 18 chr12 36254462 36255703 -107530752 - L1MA6 LINE L1 0 6300 5046 2166 130 0 0 chr12 36255707 36256008 -107530447 - AluSq SINE Alu -12 301 1 2148 120 7 0 chr12 36257261 36257560 -107528895 - THE1B LTR MaLR -63 301 1 10088 116 25 41 chr12 36257560 36259166 -107527289 - THE1B-int LTR MaLR 0 1580 1 2264 146 6 0 chr12 36259166 36259528 -107526927 - THE1B LTR MaLR 0 364 1 1843 255 20 16 chr12 36259532 36259983 -107526472 + LTR40a LTR ERVL 67 519 0 2463 184 45 4 chr12 36260499 36261014 -107525441 - L1MB1 LINE L1 0 6168 5633 1634 183 0 0 chr12 36261209 36261498 -107524957 - L1PA15 LINE L1 -196 5969 5681 1077 217 18 0 chr12 36261493 36261719 -107524736 - L1PA15 LINE L1 -1166 4980 4751 * 774 316 120 40 chr12 36261716 36262559 -107523896 - L1PA13 LINE L1 -5360 1427 445 * 419 75 0 0 chr12 36262567 36262619 -107523836 - THE1B LTR MaLR 0 364 313 2501 78 11 242 chr12 36262619 36263066 -107523389 - LTR14B LTR ERVK 0 608 1 1832 145 45 10 chr12 36263066 36263376 -107523079 - THE1B LTR MaLR -43 321 1 2081 251 14 2 chr12 36263384 36263811 -107522644 - L1PA13 LINE L1 -6355 432 1 4900 211 23 11 chr12 36263825 36265022 -107521433 - L1 LINE L1 -2579 3567 2357 1384 206 99 14 chr12 36265024 36265389 -107521066 - MSTD LTR MaLR 0 396 1 5770 250 68 25 chr12 36265393 36266975 -107519480 - MSTD-int LTR MaLR -4 1731 83 589 172 152 0 chr12 36266971 36267116 -107519339 + L1MA9 LINE L1 6146 6312 0 * 495 176 0 0 chr12 36267273 36267358 -107519097 - MER67D LTR ERV1 -429 85 1 340 136 0 86 chr12 36267535 36267616 -107518839 + L1PA10 LINE L1 6095 6168 0 819 281 0 5 chr12 36267806 36268002 -107518453 + L1ME1 LINE L1 5967 6161 -5 23 0 0 0 chr12 36268333 36268356 -107518099 + AT_rich Low_complexity Low_complexity 1 23 0 2198 89 7 10 chr12 36268367 36268658 -107517797 + AluSc SINE Alu 1 290 -19 774 242 45 10 chr12 36268733 36268931 -107517524 + MLT1E3 LTR MaLR 1 205 -419 306 326 98 16 chr12 36269433 36269617 -107516838 - MLT1L LTR MaLR -221 394 196 2573 232 31 70 chr12 36270708 36271981 -107514474 + L1ME1 LINE L1 4942 6160 -6 1527 208 170 0 chr12 36272383 36272772 -107513683 + MSTB2 LTR MaLR 3 457 0 3104 173 28 33 chr12 36273604 36274327 -107512128 + MER54B LTR ERVL 3 793 0 388 261 168 26 chr12 36274440 36274666 -107511789 + L1ME3 LINE L1 5859 6116 -46 21 36 0 0 chr12 36274759 36274787 -107511668 + AT_rich Low_complexity Low_complexity 1 28 0 713 132 0 0 chr12 36275711 36275817 -107510638 - L1PA16 LINE L1 -171 5995 5890 973 183 0 27 chr12 36275817 36276002 -107510453 + L1PA16 LINE L1 5986 6166 0 267 343 28 56 chr12 36278215 36278358 -107508097 + MIR SINE MIR 20 158 -104 279 323 15 0 chr12 36278365 36278430 -107508025 + MIR SINE MIR 3 68 -194 11767 125 26 60 chr12 36278563 36281575 -107504880 - L1P3 LINE L1 -3444 3017 8 8705 182 19 8 chr12 36281698 36284236 -107502219 - L1PA13 LINE L1 -2 6161 3603 277 312 49 29 chr12 36284345 36284550 -107501905 - Tigger4(Zombi) DNA MER2_type -1332 1399 1191 390 306 92 30 chr12 36284776 36285112 -107501343 - Tigger4(Zombi) DNA MER2_type -1747 984 628 2858 66 129 2 chr12 36285630 36286024 -107500431 - MLT2A1 LTR ERVL 0 444 1 342 218 40 20 chr12 36286288 36286389 -107500066 - MER46C DNA MER2_type -229 109 7 315 341 69 6 chr12 36286404 36286577 -107499878 + L1M4 LINE L1 2441 2624 -3522 2639 98 42 2 chr12 36286644 36287050 -107499405 + L1MA2 LINE L1 5883 6304 0 22 35 0 0 chr12 36287224 36287253 -107499202 + AT_rich Low_complexity Low_complexity 1 29 0 1398 272 13 27 chr12 36287340 36287895 -107498560 + L1MC/D LINE L1 2325 2871 -3275 304 246 0 0 chr12 36287927 36287988 -107498467 + L1MC/D LINE L1 5671 5731 -628 1507 58 11 0 chr12 36288199 36288389 -107498066 - L1PA7 LINE L1 -15 6139 5948 719 278 70 26 chr12 36290192 36290462 -107495993 + LTR16A LTR ERVL 76 357 -93 627 110 0 10 chr12 36291252 36291352 -107495103 - L1PA10 LINE L1 -1 6167 6069 21 57 0 0 chr12 36291899 36291934 -107494521 + AT_rich Low_complexity Low_complexity 1 35 0 322 290 85 17 chr12 36291950 36292126 -107494329 - LTR67 LTR ERVL -16 541 354 202 383 35 30 chr12 36292438 36292668 -107493787 - L2 LINE L2 -1964 1350 1120 218 343 86 0 chr12 36292867 36292972 -107493483 - L2 LINE L2 -2486 828 715 2320 109 0 0 chr12 36293030 36293332 -107493123 + AluSg SINE Alu 1 302 -8 508 222 22 0 chr12 36294545 36294680 -107491775 + L1MA8 LINE L1 6144 6281 -10 2419 178 16 0 chr12 36295024 36295513 -107490942 + L1P LINE L1 2599 3095 -3051 6446 12 0 0 chr12 36296451 36297176 -107489279 + L1PA2 LINE L1 5431 6155 0 278 297 47 27 chr12 36298040 36298188 -107488267 + L1M3c LINE L1 1 151 -5990 306 390 21 5 chr12 36298191 36298381 -107488074 + L1M3c LINE L1 223 415 -5726 658 105 137 8 chr12 36298756 36298880 -107487575 + L1MA9 LINE L1 5789 5928 -384 2424 140 0 11 chr12 36298880 36299259 -107487196 + THE1C LTR MaLR 1 375 0 2446 99 8 3 chr12 36299259 36299632 -107486823 + THE1C-int LTR MaLR 1 375 -1205 17059 110 16 8 chr12 36299641 36303080 -107483375 - L1PA7 LINE L1 -1 6153 2687 209 190 121 17 chr12 36303976 36304034 -107482421 + L2 LINE L2 2304 2367 -947 1380 262 77 14 chr12 36304209 36304717 -107481738 - L1MC4 LINE L1 -258 7784 7245 2182 231 34 12 chr12 36304733 36305314 -107481141 - L1MC4 LINE L1 -958 7084 6491 224 258 0 30 chr12 36306172 36306238 -107480217 + GA-rich Low_complexity Low_complexity 2 65 0 350 234 0 26 chr12 36307721 36307798 -107478657 + MER5A DNA MER1_type 16 90 -99 575 329 96 23 chr12 36308425 36308811 -107477644 + LTR16B LTR ERVL 37 450 -14 2301 147 12 2 chr12 36309964 36310513 -107475942 + L1PA8 LINE L1 3989 6172 0 * 5678 166 20 6 chr12 36310506 36312479 -107473976 + L1PB2 LINE L1 4151 6150 -1 270 0 0 0 chr12 36313212 36313242 -107473213 + (TG)n Simple_repeat Simple_repeat 2 31 0 982 224 41 4 chr12 36314765 36315063 -107471392 + L1ME1 LINE L1 5120 5424 -742 * 1229 244 85 46 chr12 36315059 36315576 -107470879 + L1ME1 LINE L1 5625 6161 -5 2532 222 6 5 chr12 36315651 36316317 -107470138 + L1PB1 LINE L1 4370 5036 -1110 5326 125 18 38 chr12 36316475 36317628 -107468827 + L1PB1 LINE L1 5021 6151 0 26 30 0 0 chr12 36317680 36317713 -107468742 + AT_rich Low_complexity Low_complexity 1 33 0 204 97 0 0 chr12 36317978 36318009 -107468446 + (CA)n Simple_repeat Simple_repeat 2 32 0 397 291 29 34 chr12 36319673 36319848 -107466607 - L1M4 LINE L1 -816 5566 5393 41490 48 2 1 chr12 36319877 36325354 -107461101 + L1P1 LINE L1 2 5483 -672 2307 177 11 11 chr12 36325518 36325976 -107460479 + L1MC1 LINE L1 5858 6315 -18 4063 21 0 0 chr12 36326200 36326665 -107459790 + L1PA3 LINE L1 5687 6151 -4 2691 246 77 19 chr12 36326689 36327948 -107458507 - L1M4 LINE L1 -2753 3629 2302 947 256 14 14 chr12 36328725 36329002 -107457453 + L1ME3A LINE L1 5887 6163 -7 2612 216 31 3 chr12 36330374 36331012 -107455443 - L1M4 LINE L1 -3198 2948 2293 3443 222 25 5 chr12 36331016 36331553 -107454902 + L1M4 LINE L1 2951 3515 -2631 189 0 0 0 chr12 36331553 36331574 -107454881 + (TAA)n Simple_repeat Simple_repeat 1 21 0 3443 222 25 5 chr12 36331574 36331976 -107454479 + L1M4 LINE L1 3515 3908 -2238 624 114 54 0 chr12 36332140 36332307 -107454148 + (TA)n Simple_repeat Simple_repeat 2 177 0 615 232 21 7 chr12 36332307 36332449 -107454006 - MER58A DNA MER1_type 0 162 19 1397 273 52 32 chr12 36332473 36332913 -107453542 + L1M4 LINE L1 4254 4721 -1425 2457 69 3 0 chr12 36332913 36333218 -107453237 + AluY SINE Alu 1 306 -5 1397 273 52 32 chr12 36333218 36333619 -107452836 + L1M4 LINE L1 4721 5112 -1034 2196 89 17 3 chr12 36333628 36333920 -107452535 + AluSp SINE Alu 1 296 -17 183 80 0 0 chr12 36333966 36333991 -107452464 + (GAAA)n Simple_repeat Simple_repeat 3 27 0 831 273 159 62 chr12 36336542 36336678 -107449777 - L2 LINE L2 -1345 1969 1848 378 0 0 0 chr12 36336678 36336720 -107449735 + (TA)n Simple_repeat Simple_repeat 2 43 0 831 273 159 62 chr12 36336720 36337150 -107449305 - L2 LINE L2 -1466 1848 1348 608 244 58 24 chr12 36338054 36338259 -107448196 + MLT1J LTR MaLR 293 504 -7 2089 68 4 0 chr12 36339282 36339548 -107446907 - AluY SINE Alu -44 267 1 1875 150 7 3 chr12 36339550 36339843 -107446612 - AluSx SINE Alu -17 295 2 1407 274 100 27 chr12 36340353 36340903 -107445552 - L2 LINE L2 -2102 1212 623 1932 75 0 0 chr12 36341413 36341665 -107444790 - L1PA7 LINE L1 -3 6151 5900 529 76 0 0 chr12 36341923 36342002 -107444453 - L1MC/D LINE L1 -902 5431 5353 * 12277 205 29 21 chr12 36341996 36342449 -107444006 - L1PA7 LINE L1 -3 6151 5703 282 56 0 0 chr12 36342449 36342485 -107443970 + (CA)n Simple_repeat Simple_repeat 2 37 0 12277 205 29 21 chr12 36342485 36342670 -107443785 - L1PA7 LINE L1 -451 5703 5521 180 0 0 0 chr12 36342670 36342690 -107443765 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 12277 205 29 21 chr12 36342690 36345399 -107441056 - L1PA7 LINE L1 -633 5521 2772 1948 83 93 17 chr12 36345399 36345688 -107440767 - AluY SINE Alu 0 311 1 12277 205 29 21 chr12 36345688 36346201 -107440254 - L1PA7 LINE L1 -3382 2772 2264 6113 237 35 13 chr12 36346212 36348191 -107438264 - L1MC/D LINE L1 -743 5403 3580 22 0 0 0 chr12 36348953 36348975 -107437480 + AT_rich Low_complexity Low_complexity 1 22 0 3134 241 105 55 chr12 36349953 36351365 -107435090 - L1MC4 LINE L1 -13 8029 6547 2027 227 124 14 chr12 36351554 36352286 -107434169 - L1ME3 LINE L1 -189 5973 5150 649 279 18 9 chr12 36352667 36352889 -107433566 - L1M1 LINE L1 -4441 3124 2901 1412 119 45 34 chr12 36352918 36353187 -107433268 - L1MA2 LINE L1 -8 6296 6025 9741 204 30 7 chr12 36353187 36355420 -107431035 - L1 LINE L1 -1229 6336 4054 1221 184 68 8 chr12 36355420 36355670 -107430785 + MSTA LTR MaLR 1 265 -163 9362 123 13 3 chr12 36355673 36357025 -107429430 - THE1C-int LTR MaLR -215 1365 1 1887 160 35 19 chr12 36357025 36357394 -107429061 - THE1C LTR MaLR 0 375 1 703 214 7 7 chr12 36357395 36357549 -107428906 + MSTA-int LTR MaLR 1427 1580 0 1937 166 97 5 chr12 36357549 36357941 -107428514 + MSTA LTR MaLR 1 428 0 12128 168 82 25 chr12 36357941 36360721 -107425734 - L1 LINE L1 -3507 4058 1103 480 148 41 41 chr12 36360715 36360837 -107425618 - L1 LINE L1 -7430 135 14 * 1821 259 31 19 chr12 36360839 36361415 -107425040 - L1MEc LINE L1 -4732 1485 903 1193 223 31 57 chr12 36361604 36361922 -107424533 - L1M4c LINE L1 -6153 1412 1103 480 148 41 41 chr12 36361916 36362038 -107424417 - L1M4c LINE L1 -7430 135 14 * 3718 233 27 35 chr12 36362040 36363045 -107423410 - L1M4c LINE L1 -4524 2129 1417 1985 134 3 3 chr12 36363045 36363364 -107423091 + AluSg SINE Alu 2 320 0 3718 233 27 35 chr12 36363364 36363587 -107422868 - L1M4c LINE L1 -5236 1417 1194 446 289 98 31 chr12 36363858 36364052 -107422403 + MIR SINE MIR 1 207 -55 256 313 48 0 chr12 36364813 36364896 -107421559 - MIR SINE MIR -175 87 1 357 273 87 43 chr12 36365959 36366120 -107420335 - MIR SINE MIR -46 216 49 27 49 0 0 chr12 36366188 36366229 -107420226 + AT_rich Low_complexity Low_complexity 1 41 0 363 293 24 32 chr12 36366444 36366567 -107419888 + L2 LINE L2 3192 3313 0 24 32 0 0 chr12 36366618 36366649 -107419806 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr12 36366820 36366858 -107419597 + AT_rich Low_complexity Low_complexity 1 38 0 457 238 0 0 chr12 36367510 36367615 -107418840 - L1MEc LINE L1 -5561 835 731 302 189 15 61 chr12 36367616 36367748 -107418707 + (CATATA)n Simple_repeat Simple_repeat 1 126 0 307 211 14 0 chr12 36368749 36368820 -107417635 - MIR SINE MIR -14 248 177 412 342 89 5 chr12 36368846 36369036 -107417419 + MIR SINE MIR 51 256 -6 2113 78 7 3 chr12 36369064 36369348 -107417107 - AluY SINE Alu -26 285 1 21 36 0 0 chr12 36370487 36370515 -107415940 + AT_rich Low_complexity Low_complexity 1 28 0 208 0 62 0 chr12 36370711 36370743 -107415712 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1863 18 5 0 chr12 36370743 36370964 -107415491 - L1PA4 LINE L1 -18 6137 5916 22 0 0 0 chr12 36371493 36371515 -107414940 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 36371772 36371793 -107414662 + AT_rich Low_complexity Low_complexity 1 21 0 7221 43 1 3 chr12 36372121 36373356 -107413099 + L1PA5 LINE L1 4915 6147 -7 2206 277 91 17 chr12 36373367 36374292 -107412163 + L2 LINE L2 2205 3215 -98 206 339 121 0 chr12 36374788 36374912 -107411543 + MIR SINE MIR 49 187 -75 714 261 28 0 chr12 36375590 36375770 -107410685 - MIR SINE MIR -48 214 30 276 323 0 31 chr12 36376611 36376707 -107409748 - L2 LINE L2 -1 3271 3179 194 61 0 30 chr12 36376882 36376915 -107409540 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 1439 6 0 0 chr12 36376931 36377092 -107409363 - L1PA4 LINE L1 -300 5855 5695 1031 16 0 0 chr12 36377086 36377212 -107409243 + L1P1 LINE L1 5358 5483 -672 * 1273 81 5 0 chr12 36379629 36379814 -107406641 - L1P LINE L1 -3665 2481 2296 949 228 13 43 chr12 36380246 36380478 -107405977 + Charlie1a DNA MER1_type 2 226 -1229 239 360 21 11 chr12 36380608 36380794 -107405661 + L1MC/D LINE L1 5722 5909 -1899 2059 154 9 0 chr12 36380964 36381301 -107405154 - L1PA15 LINE L1 -7 6158 5819 39936 69 34 2 chr12 36382149 36388124 -107398331 - L1PA13 LINE L1 -7 6156 5 371 198 58 0 chr12 36388126 36388247 -107398208 + L1 LINE L1 3396 3523 -2623 746 222 47 18 chr12 36388247 36388418 -107398037 + THE1B LTR MaLR 1 176 -188 21 36 0 0 chr12 36389066 36389094 -107397361 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 36389289 36389310 -107397145 + AT_rich Low_complexity Low_complexity 1 21 0 6641 74 3 3 chr12 36389310 36390433 -107396022 - L1PA5 LINE L1 -4 6150 5025 289 347 10 0 chr12 36390443 36390541 -107395914 - MIR SINE MIR -111 151 53 435 234 9 9 chr12 36390827 36390934 -107395521 + MLT1J2 LTR MaLR 5 111 -339 2471 242 13 32 chr12 36391790 36392343 -107394112 + MLT2B3 LTR ERVL 5 546 -8 1972 91 4 0 chr12 36393289 36393542 -107392913 + AluSp SINE Alu 51 304 -9 752 278 4 18 chr12 36393783 36394010 -107392445 + MER58A DNA MER1_type 1 224 0 447 330 17 23 chr12 36394051 36394224 -107392231 - MIR SINE MIR -14 248 77 210 37 0 0 chr12 36394383 36394410 -107392045 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 228 160 80 0 chr12 36395284 36395359 -107391096 + (TA)n Simple_repeat Simple_repeat 1 81 0 201 140 53 0 chr12 36395533 36395590 -107390865 + (TA)n Simple_repeat Simple_repeat 2 61 0 210 184 0 20 chr12 36395596 36395645 -107390810 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 468 270 53 59 chr12 36396000 36396356 -107390099 + L1ME LINE L1 542 895 -5175 8101 167 8 4 chr12 36396362 36397778 -107388677 - L1PA10 LINE L1 -3127 3019 1599 14082 150 16 7 chr12 36397778 36400877 -107385578 + L1PA10 LINE L1 3037 6156 -12 1383 340 26 54 chr12 36400892 36402241 -107384214 + L1ME LINE L1 907 2176 -3904 265 266 0 0 chr12 36402244 36402308 -107384147 + L1ME LINE L1 3564 3627 -2453 12556 108 7 4 chr12 36402458 36404293 -107382162 - L1P LINE L1 -1271 4875 3037 * 15266 101 4 57 chr12 36404286 36405439 -107381016 + L1P LINE L1 1592 2554 -3592 3618 67 7 11 chr12 36405439 36405887 -107380568 - L1PA7 LINE L1 -13 6141 5696 15266 101 4 57 chr12 36405887 36407123 -107379332 + L1P LINE L1 2554 3854 -2292 806 128 8 8 chr12 36407230 36407347 -107379108 - AluJb SINE Alu -185 127 11 960 202 0 0 chr12 36407354 36407572 -107378883 - L1M4 LINE L1 -3006 3140 2923 580 239 0 18 chr12 36407576 36407689 -107378766 + FLAM_C SINE Alu 7 117 -26 2240 112 0 13 chr12 36407736 36408050 -107378405 - AluSg SINE Alu 0 310 1 815 289 40 47 chr12 36408059 36408465 -107377990 - L1M4 LINE L1 -1034 5112 4708 2478 60 7 3 chr12 36408465 36408766 -107377689 - AluY SINE Alu -9 302 1 815 289 40 47 chr12 36408766 36408853 -107377602 - L1M4 LINE L1 -1438 4708 4622 14201 69 6 1 chr12 36408992 36410869 -107375586 + L1P2 LINE L1 3549 5433 -721 26 0 0 0 chr12 36411181 36411207 -107375248 + AT_rich Low_complexity Low_complexity 1 26 0 2073 83 4 4 chr12 36412720 36413008 -107373447 + AluY SINE Alu 20 307 0 524 182 0 15 chr12 36413230 36413362 -107373093 + GA-rich Low_complexity Low_complexity 1 130 0 221 219 0 0 chr12 36413644 36413685 -107372770 + (CCCA)n Simple_repeat Simple_repeat 2 42 0 3588 180 17 4 chr12 36413782 36414475 -107371980 - L1P LINE L1 -2096 4050 3349 299 211 14 0 chr12 36414606 36414677 -107371778 - MIR SINE MIR -14 248 177 364 342 89 5 chr12 36414703 36414893 -107371562 + MIR SINE MIR 51 256 -6 2305 74 0 0 chr12 36414921 36415206 -107371249 - AluY SINE Alu -26 285 1 227 277 128 11 chr12 36415213 36415307 -107371148 - MIR SINE MIR -106 156 52 270 0 0 0 chr12 36416379 36416409 -107370046 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr12 36416841 36416863 -107369592 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr12 36417187 36417230 -107369225 + AT_rich Low_complexity Low_complexity 1 43 0 53 17 0 0 chr12 36417715 36417775 -107368680 + AT_rich Low_complexity Low_complexity 1 60 0 274 339 54 45 chr12 36417816 36418037 -107368418 + MLT1I LTR MaLR 132 354 -55 939 182 13 7 chr12 36419227 36419381 -107367074 - FRAM SINE Alu -11 155 1 37442 45 29 1 chr12 36420218 36424832 -107361623 - L1P LINE L1 -1403 4743 2 9118 44 0 0 chr12 36424832 36425946 -107360509 + L1P LINE L1 1832 2945 -3201 43317 52 10 0 chr12 36425946 36431505 -107354950 - L1P2 LINE L1 -540 5615 1 1396 183 10 55 chr12 36431588 36431877 -107354578 + AluJo SINE Alu 1 276 -36 22 0 0 0 chr12 36432254 36432276 -107354179 + AT_rich Low_complexity Low_complexity 1 22 0 800 167 27 27 chr12 36432393 36432543 -107353912 - L1PB4 LINE L1 -2 6154 6005 23 0 0 0 chr12 36433883 36433906 -107352549 + AT_rich Low_complexity Low_complexity 1 23 0 190 305 0 84 chr12 36433995 36434090 -107352365 - MIR SINE MIR -111 151 65 246 32 0 0 chr12 36434191 36434222 -107352233 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 321 36 0 chr12 36434377 36434433 -107352022 + MIR SINE MIR 45 102 -160 2203 113 0 3 chr12 36434587 36434888 -107351567 - AluSg SINE Alu -7 303 4 215 30 0 30 chr12 36435344 36435377 -107351078 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5404 54 0 2 chr12 36435529 36436159 -107350296 - L1PA5 LINE L1 -1 6153 5525 4320 27 0 2 chr12 36436439 36436925 -107349530 - MER11D LTR ERVK -412 485 1 441 306 105 36 chr12 36439045 36439419 -107347036 - L1M2 LINE L1 -5702 1147 674 243 0 0 0 chr12 36439602 36439629 -107346826 + (T)n Simple_repeat Simple_repeat 1 27 0 2038 57 0 0 chr12 36441873 36442120 -107344335 + MER11D LTR ERVK 651 897 0 1586 69 0 25 chr12 36442482 36442721 -107343734 + AluY SINE Alu 83 316 0 1264 243 94 55 chr12 36443718 36443945 -107342510 - L1M4 LINE L1 -2130 4016 3799 952 213 0 0 chr12 36443945 36444100 -107342355 - FRAM SINE Alu -11 155 1 1264 243 94 55 chr12 36444100 36444470 -107341985 - L1M4 LINE L1 -2347 3799 3396 290 167 61 18 chr12 36446779 36446893 -107339562 + (TA)n Simple_repeat Simple_repeat 2 120 0 237 87 48 63 chr12 36446911 36447037 -107339418 + (TTATA)n Simple_repeat Simple_repeat 5 128 0 246 32 0 0 chr12 36448188 36448219 -107338236 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2337 56 43 31 chr12 36448220 36448542 -107337913 - LTR17 LTR ERV1 -454 326 1 2414 58 0 0 chr12 36448542 36448834 -107337621 - HERV17 LTR ERV1 0 8626 8335 318 26 0 0 chr12 36448824 36448863 -107337592 - HERV17 LTR ERV1 -1078 7548 7510 * 18369 45 12 0 chr12 36448856 36451056 -107335399 - HERV17 LTR ERV1 -2607 6019 3794 1115 257 69 49 chr12 36451356 36451807 -107334648 + MLT1C LTR MaLR 6 465 -2 24 0 0 0 chr12 36454514 36454538 -107331917 + AT_rich Low_complexity Low_complexity 1 24 0 1291 268 102 15 chr12 36454757 36455295 -107331160 - L1ME3A LINE L1 -15 6155 5571 19621 45 4 0 chr12 36455305 36458539 -107327916 - L1PA4 LINE L1 -3 6152 2908 566 168 20 0 chr12 36458658 36458759 -107327696 + AluSq SINE Alu 102 204 -109 225 204 0 0 chr12 36458773 36458822 -107327633 - L1MC4 LINE L1 -1342 6700 6652 1717 100 62 8 chr12 36458833 36459092 -107327363 - L1P5 LINE L1 -360 5791 5519 1935 150 3 0 chr12 36460146 36460439 -107326016 - AluSq SINE Alu -19 294 1 2274 190 28 31 chr12 36460931 36461389 -107325066 + MLT2C2 LTR ERVL 8 464 0 939 52 0 0 chr12 36461504 36461620 -107324835 - L1PA2 LINE L1 -2 6153 6038 1284 77 33 83 chr12 36462723 36462964 -107323491 + L1MA1 LINE L1 5776 5899 -265 1475 216 60 3 chr12 36462971 36463304 -107323151 - L1PA16 LINE L1 -20 6146 5795 235 162 63 27 chr12 36463305 36463416 -107323039 + (TA)n Simple_repeat Simple_repeat 1 115 0 1264 205 26 6 chr12 36463426 36463702 -107322753 - L1MC4 LINE L1 -342 5814 5570 209 306 42 0 chr12 36463740 36463812 -107322643 - MIR SINE MIR -133 129 55 6645 41 0 1 chr12 36464959 36465769 -107320686 + L1PA4 LINE L1 5347 6155 0 254 277 62 45 chr12 36465772 36465884 -107320571 + MLT1L LTR MaLR 136 249 -366 540 262 75 122 chr12 36466025 36466518 -107319937 - L2 LINE L2 0 3313 2844 427 272 9 9 chr12 36466653 36466767 -107319688 + MLT1L LTR MaLR 447 560 -55 12695 60 4 1 chr12 36466916 36468575 -107317880 + L1P LINE L1 1262 2924 -3222 571 266 0 0 chr12 36469317 36469445 -107317010 + FLAM_A SINE Alu 10 137 -5 702 174 103 0 chr12 36469612 36469767 -107316688 - MER6 DNA MER2_type 0 865 695 12615 41 3 0 chr12 36469868 36472196 -107314259 + L1PA3 LINE L1 3822 6155 0 14450 70 1 3 chr12 36472197 36474043 -107312412 - L1P LINE L1 -4304 1842 2 557 263 22 22 chr12 36474048 36474276 -107312179 - L1MC4 LINE L1 -591 5579 5352 552 279 0 0 chr12 36474280 36474445 -107312010 - L1MC4 LINE L1 -859 5287 5123 306 346 73 11 chr12 36474599 36474778 -107311677 - L2 LINE L2 -832 2482 2293 201 319 71 105 chr12 36474906 36475172 -107311283 + L2 LINE L2 2270 2526 -788 215 245 245 20 chr12 36475370 36475472 -107310983 - MIR SINE MIR -130 132 8 391 315 54 0 chr12 36476526 36476656 -107309799 - MIR3 SINE MIR -11 197 61 345 269 23 47 chr12 36476908 36477113 -107309342 - HAL1 LINE L1 -275 2232 1962 10275 207 56 23 chr12 36477156 36477499 -107308956 - L1MC3 LINE L1 0 7785 7455 1658 230 22 0 chr12 36477499 36477856 -107308599 + MLT1A1 LTR MaLR 1 365 0 10275 207 56 23 chr12 36477856 36480198 -107306257 - L1MC3 LINE L1 -330 7455 5006 1307 161 35 121 chr12 36480198 36480595 -107305860 - MLT1A1 LTR MaLR -2 363 1 10275 207 56 23 chr12 36480595 36480625 -107305830 - L1MC3 LINE L1 -2779 5006 4978 22 70 0 0 chr12 36482267 36482310 -107304145 + AT_rich Low_complexity Low_complexity 1 43 0 453 299 63 35 chr12 36482451 36482625 -107303830 + MIR3 SINE MIR 19 197 -11 234 312 22 22 chr12 36483451 36483589 -107302866 - L1MC4a LINE L1 -1787 6021 5884 283 304 11 0 chr12 36484050 36484142 -107302313 - L2 LINE L2 0 3272 3180 674 292 75 4 chr12 36484180 36484420 -107302035 + L2 LINE L2 2572 2828 -486 294 313 67 56 chr12 36485438 36485633 -107300822 + MIR SINE MIR 8 204 -58 2149 123 6 0 chr12 36485725 36486049 -107300406 - L1PB1 LINE L1 -8 6859 6534 9214 185 13 39 chr12 36486051 36488664 -107297791 - L1PB1 LINE L1 -492 6375 3842 2920 146 153 5 chr12 36488660 36490489 -107295966 - L1PB1 LINE L1 -4031 2832 605 * 3338 100 35 81 chr12 36490521 36491141 -107295314 - LTR14B LTR ERVK 0 608 17 1606 271 45 11 chr12 36491141 36491669 -107294786 - L1PB1 LINE L1 -6312 551 6 467 271 107 37 chr12 36491694 36491829 -107294626 + L2 LINE L2 3005 3129 -184 2009 143 39 3 chr12 36491829 36492165 -107294290 + MER7A DNA MER2_type 1 346 0 467 271 107 37 chr12 36492165 36492273 -107294182 + L2 LINE L2 3129 3265 -48 726 234 26 75 chr12 36493610 36493837 -107292618 + MIR SINE MIR 31 246 -16 22 35 0 0 chr12 36495001 36495030 -107291425 + AT_rich Low_complexity Low_complexity 1 29 0 355 235 59 24 chr12 36495407 36495492 -107290963 + MLT1H LTR MaLR 411 498 -51 21 0 0 0 chr12 36496367 36496388 -107290067 + AT_rich Low_complexity Low_complexity 1 21 0 33 66 0 0 chr12 36496603 36496664 -107289791 + AT_rich Low_complexity Low_complexity 1 61 0 200 248 16 25 chr12 36496677 36496798 -107289657 + (TAA)n Simple_repeat Simple_repeat 3 122 0 531 68 0 0 chr12 36496863 36496936 -107289519 + Alu SINE Alu 224 296 -15 23 0 0 0 chr12 36497148 36497171 -107289284 + AT_rich Low_complexity Low_complexity 1 23 0 298 345 143 0 chr12 36497209 36497328 -107289127 - L2 LINE L2 0 3272 3137 327 250 12 25 chr12 36498601 36498681 -107287774 - MIR SINE MIR -107 101 23 2360 58 3 3 chr12 36499790 36500085 -107286370 - AluY SINE Alu -16 295 1 2386 65 14 0 chr12 36500093 36500385 -107286070 - AluSp SINE Alu -17 296 1 351 44 0 0 chr12 36501374 36501419 -107285036 + (CA)n Simple_repeat Simple_repeat 2 46 0 305 248 60 38 chr12 36501793 36501926 -107284529 + L2 LINE L2 416 551 -2763 493 297 40 7 chr12 36501947 36502152 -107284303 + MIR SINE MIR 2 254 -8 2597 99 11 8 chr12 36502554 36502917 -107283538 + THE1B LTR MaLR 1 364 0 286 275 84 23 chr12 36503140 36503271 -107283184 + L1ME LINE L1 89 227 -5843 356 316 83 18 chr12 36503285 36503453 -107283002 + L1ME LINE L1 274 452 -5618 619 258 163 5 chr12 36504557 36504747 -107281708 + MIR SINE MIR 11 230 -32 390 360 167 22 chr12 36505416 36505924 -107280531 - L3 LINE CR1 -3 1574 993 24 0 0 0 chr12 36505924 36505948 -107280507 + AT_rich Low_complexity Low_complexity 1 24 0 563 315 91 26 chr12 36505966 36506198 -107280257 + MIR SINE MIR 8 254 -8 593 162 29 59 chr12 36506334 36506470 -107279985 + FLAM_C SINE Alu 6 137 -6 209 232 14 0 chr12 36506473 36506542 -107279913 + (TA)n Simple_repeat Simple_repeat 2 71 0 1428 109 19 9 chr12 36507191 36507402 -107279053 + MER30 DNA MER1_type 1 213 -17 2428 92 0 3 chr12 36509132 36509446 -107277009 + AluSq SINE Alu 1 313 0 240 254 111 0 chr12 36510145 36510208 -107276247 + MIR3 SINE MIR 124 193 -15 3369 166 23 12 chr12 36510338 36510988 -107275467 + L1MA7 LINE L1 5619 6275 -16 992 208 75 106 chr12 36511066 36511540 -107274915 + MLT1C LTR MaLR 1 467 0 588 63 13 0 chr12 36511836 36511915 -107274540 + MADE1 DNA Mariner 1 80 0 22 0 0 0 chr12 36512131 36512153 -107274302 + AT_rich Low_complexity Low_complexity 1 22 0 254 324 137 7 chr12 36513981 36514120 -107272335 + L2 LINE L2 2699 2855 -459 863 276 22 13 chr12 36514431 36514663 -107271792 - MIR SINE MIR -10 252 19 295 330 170 9 chr12 36514685 36514797 -107271658 + L2 LINE L2 3134 3263 -9 370 306 134 34 chr12 36515626 36515835 -107270620 - MIR SINE MIR -32 230 1 270 0 0 0 chr12 36516915 36516945 -107269510 + (A)n Simple_repeat Simple_repeat 1 30 0 215 396 60 7 chr12 36518347 36518496 -107267959 - MIR3 SINE MIR -3 205 49 206 189 170 19 chr12 36518653 36518706 -107267749 + MER5B DNA MER1_type 45 105 -73 191 302 23 35 chr12 36518676 36518762 -107267693 + MER5A DNA MER1_type 25 109 -80 * 322 255 41 10 chr12 36519237 36519335 -107267120 + MLT1I LTR MaLR 306 406 -3 24 67 0 0 chr12 36519661 36519706 -107266749 + AT_rich Low_complexity Low_complexity 1 45 0 2203 168 57 14 chr12 36519790 36520213 -107266242 - MER65A LTR ERV1 -4 441 1 270 309 31 0 chr12 36520213 36520310 -107266145 - MER81 DNA DNA -6 108 9 1863 129 42 58 chr12 36520310 36520691 -107265764 + THE1C LTR MaLR 1 375 0 514 231 97 30 chr12 36520755 36520889 -107265566 + MER5A DNA MER1_type 1 143 -46 859 289 28 73 chr12 36522511 36523019 -107263436 + L1MCc LINE L1 651 1135 -5288 324 0 0 0 chr12 36523019 36523055 -107263400 + (TG)n Simple_repeat Simple_repeat 2 37 0 973 286 43 6 chr12 36523067 36523417 -107263038 - L1ME LINE L1 -498 5672 5310 495 114 0 0 chr12 36523428 36523507 -107262948 + L1PA14 LINE L1 6078 6156 -5 947 231 96 4 chr12 36523713 36523994 -107262461 + MER5C DNA MER1_type 12 318 -6 27 0 0 0 chr12 36524105 36524132 -107262323 + AT_rich Low_complexity Low_complexity 1 27 0 186 191 0 0 chr12 36524607 36524649 -107261806 + T-rich Low_complexity Low_complexity 1 42 0 338 129 18 13 chr12 36524825 36524899 -107261556 - L1ME1 LINE L1 0 6184 6102 53 17 0 0 chr12 36525283 36525343 -107261112 + AT_rich Low_complexity Low_complexity 1 60 0 277 339 54 45 chr12 36525384 36525605 -107260850 + MLT1I LTR MaLR 132 354 -55 23 0 0 0 chr12 36527092 36527115 -107259340 + AT_rich Low_complexity Low_complexity 1 23 0 212 287 253 0 chr12 36528728 36528815 -107257640 - L2 LINE L2 -1 3312 3204 269 265 84 0 chr12 36528897 36528980 -107257475 + MER3 DNA MER1_type 12 101 -108 213 39 0 0 chr12 36528988 36529014 -107257441 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1432 119 5 0 chr12 36529014 36529216 -107257239 - AluSg/x SINE Alu -25 284 82 36 23 0 0 chr12 36529216 36529259 -107257196 + AT_rich Low_complexity Low_complexity 1 43 0 1455 179 44 11 chr12 36529508 36529782 -107256673 + AluSx SINE Alu 1 283 -29 369 0 0 0 chr12 36529789 36529830 -107256625 + (CA)n Simple_repeat Simple_repeat 2 42 0 33 0 0 0 chr12 36529993 36530026 -107256429 + AT_rich Low_complexity Low_complexity 1 33 0 273 376 91 11 chr12 36530114 36530300 -107256155 - MIR SINE MIR -32 230 30 1519 218 112 3 chr12 36530311 36530670 -107255785 + MLT1D LTR MaLR 1 460 -123 279 294 35 56 chr12 36531587 36531730 -107254725 - MIR SINE MIR -74 188 49 357 264 163 0 chr12 36532100 36532229 -107254226 - MIR SINE MIR -45 217 68 6778 239 65 49 chr12 36532424 36535408 -107251047 - L1PA15-16 LINE L1 -2046 5538 2529 2082 158 5 30 chr12 36535416 36535789 -107250666 + THE1B LTR MaLR 1 364 0 11088 101 10 38 chr12 36535789 36537412 -107249043 + THE1B-int LTR MaLR 1 1578 -2 2122 139 5 52 chr12 36537414 36537796 -107248659 + THE1B LTR MaLR 1 364 0 808 324 6 9 chr12 36537800 36538118 -107248337 - L1PA15-16 LINE L1 -5074 2507 2191 325 257 21 71 chr12 36538362 36538502 -107247953 - L1PA15-16 LINE L1 -5395 2186 2054 1021 363 20 25 chr12 36538614 36539204 -107247251 - L1PA15-16 LINE L1 -6200 1374 788 430 239 0 0 chr12 36539672 36539764 -107246691 + L2 LINE L2 3222 3313 0 354 395 36 0 chr12 36539863 36540030 -107246425 - MIR3 SINE MIR -28 180 8 1473 218 7 18 chr12 36541579 36541896 -107244559 + AluJo SINE Alu 1 314 0 350 351 26 13 chr12 36541907 36542061 -107244394 + MIR3 SINE MIR 32 187 -21 214 375 83 73 chr12 36542147 36542544 -107243911 - L2 LINE L2 -46 3226 2826 249 14 68 54 chr12 36542940 36543014 -107243441 + (TA)n Simple_repeat Simple_repeat 2 76 0 269 161 34 101 chr12 36543014 36543163 -107243292 + (CTATA)n Simple_repeat Simple_repeat 3 141 0 226 97 0 97 chr12 36543165 36543341 -107243114 + (TA)n Simple_repeat Simple_repeat 1 159 0 4271 115 9 5 chr12 36544341 36544994 -107241461 - L1P LINE L1 -5486 660 5 2580 220 34 55 chr12 36544996 36545118 -107241337 + L1MA9 LINE L1 3396 3519 -2627 2033 145 25 30 chr12 36545118 36545484 -107240971 + THE1B LTR MaLR 1 364 0 11157 113 8 0 chr12 36545484 36547052 -107239403 + THE1B-int LTR MaLR 1 1580 0 2060 144 22 35 chr12 36547052 36547421 -107239034 + THE1B LTR MaLR 1 364 0 2580 220 34 55 chr12 36547421 36547744 -107238711 + L1MA9 LINE L1 3517 3845 -2301 4820 101 22 5 chr12 36547744 36548486 -107237969 + L1MA1 LINE L1 5549 6302 0 2580 220 34 55 chr12 36548486 36548988 -107237467 + L1MA9 LINE L1 3845 4325 -1821 5356 109 22 0 chr12 36549040 36549401 -107237054 - L1PA13 LINE L1 -8 6155 5804 2377 127 5 24 chr12 36549401 36549771 -107236684 + THE1B LTR MaLR 2 364 0 5356 109 22 0 chr12 36549771 36550687 -107235768 - L1PA13 LINE L1 -359 5804 4855 2415 201 19 11 chr12 36550688 36551221 -107235234 + L1MA9 LINE L1 5407 5943 -369 318 26 0 0 chr12 36552394 36552433 -107234022 + (GA)n Simple_repeat Simple_repeat 1 39 0 * 360 0 0 0 chr12 36552432 36552472 -107233983 + (TG)n Simple_repeat Simple_repeat 2 41 0 181 319 14 29 chr12 36553051 36553120 -107233335 - MER5B DNA MER1_type -74 104 37 257 173 40 40 chr12 36553159 36553234 -107233221 - MER116 DNA Mariner 0 80 6 219 338 14 14 chr12 36553275 36553349 -107233106 - MER5A DNA MER1_type -63 126 53 4817 69 12 0 chr12 36554140 36554779 -107231676 - L1PA6 LINE L1 -3 6151 5505 8197 193 23 13 chr12 36554808 36556533 -107229922 - L1PA12 LINE L1 -1193 6391 4649 * 35383 109 26 14 chr12 36556529 36562628 -107223827 - L1PA8 LINE L1 0 6172 11 7281 212 18 14 chr12 36562644 36564944 -107221511 - L1PA12 LINE L1 -2922 4662 2360 675 159 0 0 chr12 36564944 36565051 -107221404 - U6 snRNA snRNA 0 107 1 259 360 51 34 chr12 36565484 36565662 -107220793 - L3 LINE CR1 -85 1492 1312 431 242 36 24 chr12 36566111 36566276 -107220179 + L1ME4a LINE L1 5583 5749 -372 1592 125 14 108 chr12 36566312 36566663 -107219792 + L1MA10 LINE L1 5922 6239 -95 260 87 406 0 chr12 36566915 36566984 -107219471 + L1MA10 LINE L1 6235 6331 -3 320 259 126 21 chr12 36566996 36567139 -107219316 + L1ME4a LINE L1 5798 5955 -166 203 279 0 16 chr12 36567161 36567222 -107219233 + GA-rich Low_complexity Low_complexity 4 63 0 1487 136 129 22 chr12 36567593 36567865 -107218590 - AluSx SINE Alu -11 301 1 703 285 0 0 chr12 36567939 36568090 -107218365 - MER5A DNA MER1_type -14 175 25 15639 99 12 1 chr12 36569846 36572029 -107214426 + L1P LINE L1 1 2209 -3937 * 41395 59 5 4 chr12 36572026 36578140 -107208315 + L1PA5 LINE L1 39 6154 0 349 294 142 41 chr12 36578499 36578717 -107207738 + MIR SINE MIR 23 262 0 1279 207 42 72 chr12 36580352 36580738 -107205717 + MLT1A2 LTR MaLR 1 374 0 1452 172 71 98 chr12 36580964 36581371 -107205084 + MSTD LTR MaLR 1 396 0 1426 241 71 49 chr12 36584424 36584918 -107201537 + MLT1D LTR MaLR 1 505 0 828 304 149 8 chr12 36586351 36586720 -107199735 + MLT1J LTR MaLR 77 497 -14 493 214 55 167 chr12 36588256 36588630 -107197825 + LTR28 LTR ERV1 1 1147 -101 23 0 0 0 chr12 36588805 36588828 -107197627 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 36588988 36589009 -107197446 + AT_rich Low_complexity Low_complexity 1 21 0 263 301 154 0 chr12 36590822 36590945 -107195510 + MIR SINE MIR 121 262 0 212 373 89 27 chr12 36591299 36591524 -107194931 + L3 LINE CR1 211 449 -1128 2357 91 54 23 chr12 36591527 36591880 -107194575 + THE1B LTR MaLR 1 364 0 2037 70 4 4 chr12 36591880 36592152 -107194303 + THE1B-int LTR MaLR 1 272 -1308 2228 249 79 28 chr12 36592154 36593896 -107192559 - L1M2 LINE L1 -4221 2886 1028 1396 207 0 29 chr12 36593896 36594176 -107192279 - L1M2 LINE L1 -6758 272 1 282 370 104 45 chr12 36594193 36594272 -107192183 + L3 LINE CR1 910 983 -594 2176 169 51 5 chr12 36594272 36594681 -107191774 + MSTA LTR MaLR 1 428 0 282 370 104 45 chr12 36594681 36595044 -107191411 + L3 LINE CR1 983 1378 -199 502 283 36 7 chr12 36595164 36595302 -107191153 + MIR SINE MIR 1 142 -120 817 279 30 7 chr12 36595306 36595607 -107190848 + MER46C DNA MER2_type 12 319 -19 2122 144 33 30 chr12 36595700 36596062 -107190393 - THE1B LTR MaLR 0 364 2 1147 62 0 0 chr12 36596549 36596693 -107189762 - AluY SINE Alu 0 311 168 2046 185 60 25 chr12 36596858 36597295 -107189160 - MSTB2 LTR MaLR -5 452 1 397 306 197 12 chr12 36598322 36598642 -107187813 - L2 LINE L2 -998 2316 1938 21 71 0 0 chr12 36599099 36599141 -107187314 + AT_rich Low_complexity Low_complexity 1 42 0 2498 201 34 17 chr12 36599225 36599752 -107186703 + MER89 LTR ERV1 1 536 -23 3367 120 12 2 chr12 36599953 36600462 -107185993 + MER75 DNA T2_type 1 514 0 633 286 39 0 chr12 36602075 36602257 -107184198 - MIR SINE MIR -2 260 72 356 160 0 0 chr12 36602453 36602503 -107183952 + MER75 DNA T2_type 22 71 -443 467 108 11 0 chr12 36602520 36602613 -107183842 + (CA)n Simple_repeat Simple_repeat 1 94 0 2330 47 47 3 chr12 36602860 36603158 -107183297 - AluY SINE Alu 0 311 1 909 240 90 49 chr12 36604371 36604738 -107181717 - LTR50 LTR ERVL 0 795 414 948 278 87 10 chr12 36604781 36605080 -107181375 - LTR50 LTR ERVL -472 323 2 2074 221 22 35 chr12 36605179 36605714 -107180741 - L1P LINE L1 -1919 4227 3700 1747 61 13 0 chr12 36605790 36606019 -107180436 - MER75 DNA T2_type -2 512 281 1296 195 57 39 chr12 36606035 36606369 -107180086 - L1P LINE L1 -2486 3660 3321 246 266 25 13 chr12 36606815 36606894 -107179561 + LTR33A LTR ERVL 444 523 0 831 315 36 18 chr12 36607851 36608181 -107178274 + LTR16B LTR ERVL 125 460 -4 1824 329 65 37 chr12 36608221 36608965 -107177490 + HERV16 LTR ERVL 61 840 -4156 5712 76 53 2 chr12 36608965 36609751 -107176704 + LTR12 LTR ERV1 1 826 0 1824 329 65 37 chr12 36609751 36609976 -107176479 + HERV16 LTR ERVL 840 1057 -3939 5342 146 38 41 chr12 36610801 36612290 -107174165 + L1M1 LINE L1 4124 5618 -685 824 0 0 0 chr12 36612359 36612453 -107174002 - L1PA3 LINE L1 -250 5905 5812 1955 13 0 0 chr12 36612453 36612702 -107173753 + L1PA3 LINE L1 5914 6162 0 1125 249 24 45 chr12 36613092 36613474 -107172981 + MLT1A2 LTR MaLR 1 374 0 592 262 6 6 chr12 36613969 36614152 -107172303 + L1MC/D LINE L1 5189 5371 -775 * 6575 86 14 0 chr12 36614148 36615065 -107171390 - L1PA7 LINE L1 -1116 5030 4101 6530 73 14 6 chr12 36615067 36616161 -107170294 + L1PA7 LINE L1 5041 6141 -13 572 51 0 0 chr12 36616165 36616243 -107170212 + L1MC/D LINE L1 5354 5431 -902 947 274 66 51 chr12 36616455 36616925 -107169530 - LTR33 LTR ERVL -3 518 42 2285 77 0 3 chr12 36617050 36617358 -107169097 + AluY SINE Alu 1 307 0 530 183 0 8 chr12 36617580 36617711 -107168744 + GA-rich Low_complexity Low_complexity 1 130 0 221 219 0 0 chr12 36617993 36618034 -107168421 + (CCCA)n Simple_repeat Simple_repeat 2 42 0 11598 36 3 0 chr12 36618131 36619562 -107166893 - L1P LINE L1 -2096 4050 2615 3817 37 2 0 chr12 36619562 36620017 -107166438 + L1PA3 LINE L1 5696 6152 -3 27 0 0 0 chr12 36620692 36620719 -107165736 + AT_rich Low_complexity Low_complexity 1 27 0 305 379 29 14 chr12 36621464 36621604 -107164851 - MIR3 SINE MIR -51 157 16 348 24 0 0 chr12 36622050 36622091 -107164364 + (CA)n Simple_repeat Simple_repeat 2 42 0 997 237 113 34 chr12 36622091 36622471 -107163984 - HERVL68 LTR ERVL -337 2700 2291 230 326 11 22 chr12 36623036 36623125 -107163330 - MIR SINE MIR -105 157 70 224 59 29 0 chr12 36623319 36623353 -107163102 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 318 327 39 70 chr12 36624047 36624304 -107162151 - MIR SINE MIR -2 260 12 594 239 133 28 chr12 36624444 36624662 -107161793 + L1ME1 LINE L1 36 276 -6120 1371 257 70 4 chr12 36624698 36625200 -107161255 + L1ME1 LINE L1 4708 5242 -973 691 86 0 0 chr12 36625207 36625300 -107161155 - HY3 scRNA scRNA -3 98 6 2469 226 76 38 chr12 36625332 36626268 -107160187 + L1ME1 LINE L1 5284 6231 -4 1639 188 70 25 chr12 36627930 36628146 -107158309 - MLT1B LTR MaLR 0 390 150 1520 189 17 28 chr12 36628146 36628310 -107158145 - AluJb SINE Alu -24 288 127 186 43 0 0 chr12 36628310 36628333 -107158122 + (TG)n Simple_repeat Simple_repeat 2 24 0 1520 189 17 28 chr12 36628333 36628459 -107157996 - AluJb SINE Alu -185 127 1 1639 188 70 25 chr12 36628459 36628597 -107157858 - MLT1B LTR MaLR -240 150 20 437 36 18 0 chr12 36628597 36628653 -107157802 + THE1C LTR MaLR 1 57 -318 * 1283 141 5 19 chr12 36628642 36628855 -107157600 + THE1C LTR MaLR 162 371 -4 324 70 0 0 chr12 36628929 36628972 -107157483 + (CA)n Simple_repeat Simple_repeat 1 43 0 25 0 0 0 chr12 36629268 36629293 -107157162 + AT_rich Low_complexity Low_complexity 1 25 0 718 315 172 21 chr12 36629294 36630135 -107156320 + L2 LINE L2 2347 3313 0 279 287 99 10 chr12 36632376 36632477 -107153978 - MIR SINE MIR -133 129 20 26 0 0 0 chr12 36633788 36633814 -107152641 + AT_rich Low_complexity Low_complexity 1 26 0 32 67 0 0 chr12 36634592 36634652 -107151803 + AT_rich Low_complexity Low_complexity 1 60 0 1333 202 0 4 chr12 36635058 36635291 -107151164 - AluJb SINE Alu -27 285 54 576 239 0 0 chr12 36635294 36635403 -107151052 - AluJo/FLAM SINE Alu -201 111 3 446 242 189 8 chr12 36635406 36635538 -107150917 - MER5A DNA MER1_type -6 183 28 733 224 16 42 chr12 36635551 36635743 -107150712 - MER5A DNA MER1_type 0 189 3 378 369 66 21 chr12 36636688 36637067 -107149388 + L2 LINE L2 2249 2644 -670 331 80 0 101 chr12 36638593 36638792 -107147663 + (TA)n Simple_repeat Simple_repeat 2 180 0 388 104 0 109 chr12 36638806 36639008 -107147447 + (TA)n Simple_repeat Simple_repeat 1 180 0 249 14 68 54 chr12 36639105 36639179 -107147276 + (TA)n Simple_repeat Simple_repeat 2 76 0 231 361 56 60 chr12 36639575 36639791 -107146664 + L2 LINE L2 2826 3040 -232 15924 86 99 41 chr12 36639892 36642863 -107143592 + L1PA6 LINE L1 3129 6154 0 9631 175 36 17 chr12 36642879 36644613 -107141842 + L1PA13 LINE L1 3231 5027 -1136 4783 72 12 2 chr12 36644613 36645256 -107141199 + L1PA6 LINE L1 5505 6154 0 9631 175 36 17 chr12 36645256 36646408 -107140047 + L1PA13 LINE L1 5027 6156 -7 2046 157 9 0 chr12 36647256 36647593 -107138862 + L1PA15 LINE L1 5819 6158 -7 349 329 45 61 chr12 36647711 36647957 -107138498 - L1ME4a LINE L1 -164 5957 5716 943 228 13 43 chr12 36648081 36648313 -107138142 - Charlie1a DNA MER1_type -1229 226 2 1170 139 0 0 chr12 36848644 36849616 -106936839 + ALR/Alpha Satellite centromeric 1 972 -74 6170 65 2 2 chr12 36849631 36850436 -106936019 - L1PA3 LINE L1 -3 6152 5348 1429 147 9 0 chr12 36850536 36850760 -106935695 - L1P LINE L1 -5920 226 1 1084 168 8 5 chr12 36850764 36852409 -106934046 - ALR/Alpha Satellite centromeric 0 7691 6052 2823 19 0 0 chr12 36852409 36852720 -106933735 + AluYb8 SINE Alu 1 311 -7 1084 168 8 5 chr12 36852720 36858435 -106928020 - ALR/Alpha Satellite centromeric -1639 6052 1 4240 39 0 170 chr12 36858435 36859204 -106927251 - L1PA3 LINE L1 -1367 4779 4142 7297 37 7 0 chr12 36859204 36860537 -106925918 + L1PA3 LINE L1 4797 6135 -20 264 30 0 0 chr12 36860540 36860573 -106925882 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1066 181 5 2 chr12 36860579 36862289 -106924166 - ALR/Alpha Satellite centromeric 0 1716 1 1020 171 9 2 chr12 36862300 36863285 -106923170 - ALR/Alpha Satellite centromeric 0 991 1 1083 176 5 3 chr12 36863399 36870411 -106916044 - ALR/Alpha Satellite centromeric 0 7024 1 7171 35 0 0 chr12 36870411 36871609 -106914846 - L1PA3 LINE L1 -3 6152 4935 35734 68 3 5 chr12 36871613 36876323 -106910132 - L1PA3 LINE L1 -1445 4701 1 1045 172 4 4 chr12 36876324 36881422 -106905033 - ALR/Alpha Satellite centromeric 0 5101 1 1227 172 4 3 chr12 36881451 36896798 -106889657 - ALR/Alpha Satellite centromeric -1 15367 1 1179 156 2 2 chr12 36897063 36904215 -106882240 - ALR/Alpha Satellite centromeric -3 7150 1 1182 149 8 5 chr12 36904317 36905331 -106881124 - ALR/Alpha Satellite centromeric 0 1017 1 1219 99 5 42 chr12 36905332 36905523 -106880932 + LTR5 LTR ERVK 1 184 -785 2683 125 3 0 chr12 36905533 36905925 -106880530 + LTR5 LTR ERVK 577 969 0 982 158 16 2 chr12 36905925 36906423 -106880032 - ALR/Alpha Satellite centromeric 0 504 1 1053 165 4 6 chr12 36906435 36909691 -106876764 - ALR/Alpha Satellite centromeric -7 3250 1 6479 125 5 3 chr12 36909703 36910670 -106875785 + LTR5 LTR ERVK 1 969 0 1074 174 3 2 chr12 36910670 36912546 -106873909 - ALR/Alpha Satellite centromeric 0 1878 1 1143 168 4 2 chr12 36912558 36914670 -106871785 - ALR/Alpha Satellite centromeric 0 2115 1 1210 159 3 2 chr12 36914770 36919956 -106866499 - ALR/Alpha Satellite centromeric 0 10281 4960 985 56 0 0 chr12 36919956 36920081 -106866374 + L1PA3 LINE L1 6026 6150 -5 1210 159 3 2 chr12 36920081 36925045 -106861410 - ALR/Alpha Satellite centromeric -5321 4960 1 1224 158 6 1 chr12 36925168 36931119 -106855336 + ALR/Alpha Satellite centromeric 1 5980 -31 1167 157 3 3 chr12 36931226 36940055 -106846400 - ALR/Alpha Satellite centromeric 0 8832 1 1255 159 3 2 chr12 36940070 36952000 -106834455 + ALR/Alpha Satellite centromeric 1 12257 -9441 2390 88 0 0 chr12 36952000 36952305 -106834150 + AluY SINE Alu 5 309 -2 1255 159 3 2 chr12 36952305 36961728 -106824727 + ALR/Alpha Satellite centromeric 12257 21672 -26 1154 157 5 2 chr12 36961837 36969659 -106816796 - ALR/Alpha Satellite centromeric -1 7842 1 1279 143 3 1 chr12 36969766 36993038 -106793417 + ALR/Alpha Satellite centromeric 1 23317 -27 40603 68 3 2 chr12 36993039 36999184 -106787271 - L1PA3 LINE L1 -3 6152 2 1176 158 3 0 chr12 36999184 37002959 -106783496 + ALR/Alpha Satellite centromeric 1 3786 -14 1185 154 5 2 chr12 37002973 37014046 -106772409 - ALR/Alpha Satellite centromeric 0 11107 1 37602 64 38 3 chr12 37014046 37019010 -106767445 + L1PA8 LINE L1 1 5141 -1005 4073 93 2 7 chr12 37069010 37069588 -106716867 + L1PA8 LINE L1 5596 6170 -2 1946 144 14 14 chr12 37070590 37070937 -106715518 + MER7A DNA MER2_type 1 345 -1 301 302 113 19 chr12 37071380 37071486 -106714969 + L2 LINE L2 3182 3297 -16 1452 201 0 34 chr12 37072037 37072330 -106714125 + AluJo SINE Alu 9 291 -21 228 262 85 71 chr12 37073829 37073970 -106712485 + L1ME4a LINE L1 5975 6117 -4 1309 199 51 67 chr12 37075797 37076081 -106710374 - MLT1A1 LTR MaLR 0 365 86 2082 131 0 0 chr12 37076081 37076411 -106710044 - AluSg SINE Alu 0 330 1 1309 199 51 67 chr12 37076411 37076496 -106709959 - MLT1A1 LTR MaLR -279 86 1 1257 210 0 12 chr12 37077546 37077789 -106708666 + AluJo SINE Alu 1 240 -72 3471 194 113 83 chr12 37077794 37078932 -106707523 + MER52A LTR ERV1 25 1196 -559 301 222 28 0 chr12 37078922 37078994 -106707461 + MER52A LTR ERV1 1682 1755 0 * 450 111 0 28 chr12 37078994 37079066 -106707389 + AluJo SINE Alu 235 304 -8 1271 245 33 12 chr12 37079625 37079956 -106706499 - MLT1A1 LTR MaLR -2 363 26 1023 326 74 24 chr12 37081487 37082096 -106704359 + L2 LINE L2 2574 3223 -90 9501 210 35 23 chr12 37082104 37082473 -106703982 - L1MB1 LINE L1 -13 6741 6378 826 82 0 34 chr12 37082473 37082620 -106703835 + (TA)n Simple_repeat Simple_repeat 1 142 0 9501 210 35 23 chr12 37082620 37083595 -106702860 - L1MB1 LINE L1 -376 6378 5416 1652 147 0 4 chr12 37083595 37083869 -106702586 - AluSx SINE Alu 0 305 33 9501 210 35 23 chr12 37083869 37085930 -106700525 - L1MB1 LINE L1 -1338 5416 3293 619 325 13 4 chr12 37085944 37086178 -106700277 - L1MB1 LINE L1 -4962 1691 1456 431 340 45 54 chr12 37086361 37086744 -106699711 - L1MB1 LINE L1 -5378 1275 948 516 310 63 34 chr12 37086888 37087156 -106699299 - L1MB1 LINE L1 -5611 1042 767 28 61 0 0 chr12 37087241 37087290 -106699165 + AT_rich Low_complexity Low_complexity 1 49 0 512 208 61 80 chr12 37087321 37087533 -106698922 + L1MC5 LINE L1 6991 7198 -763 1773 161 3 10 chr12 37088105 37088403 -106698052 - AluSx SINE Alu -16 296 1 2113 95 3 14 chr12 37088664 37088960 -106697495 + AluY SINE Alu 1 293 -18 39 68 0 0 chr12 37089647 37089721 -106696734 + AT_rich Low_complexity Low_complexity 1 74 0 1824 135 54 43 chr12 37090156 37090527 -106695928 - THE1C LTR MaLR 0 375 1 1911 153 0 28 chr12 37091966 37092287 -106694168 - AluSx SINE Alu 0 312 1 514 311 142 18 chr12 37093013 37094141 -106692314 + HAL1 LINE L1 133 1120 -1387 210 37 0 0 chr12 37094141 37094168 -106692287 + (CA)n Simple_repeat Simple_repeat 2 28 0 514 311 142 18 chr12 37094168 37094776 -106691679 + HAL1 LINE L1 1120 2143 -364 1295 190 0 13 chr12 37094781 37095007 -106691448 - MER41D LTR ERV1 0 557 335 21 57 0 0 chr12 37095627 37095662 -106690793 + AT_rich Low_complexity Low_complexity 1 35 0 3007 154 84 24 chr12 37096303 37097073 -106689382 - MER21A LTR ERV1 0 931 1 21 36 0 0 chr12 37097830 37097858 -106688597 + AT_rich Low_complexity Low_complexity 1 28 0 521 42 0 0 chr12 37098320 37098392 -106688063 - L1PA3 LINE L1 -98 6057 5986 761 22 0 0 chr12 37098394 37098483 -106687972 + L1PA3 LINE L1 6063 6151 -4 231 278 37 0 chr12 37098618 37098672 -106687783 - L2 LINE L2 0 3272 3217 1293 211 45 23 chr12 37100533 37100841 -106685614 + MLT1A2 LTR MaLR 60 374 0 382 313 107 25 chr12 37101001 37101282 -106685173 + L1ME4a LINE L1 5644 5947 -174 420 185 12 0 chr12 37101448 37101529 -106684926 - MER94 DNA DNA -49 85 4 222 343 52 30 chr12 37101575 37101709 -106684746 + MIR SINE MIR 81 217 -45 295 137 27 0 chr12 37101911 37101984 -106684471 + (TA)n Simple_repeat Simple_repeat 1 75 0 1876 49 16 8 chr12 37102638 37102883 -106683572 - AluY SINE Alu -1 310 64 21 57 0 0 chr12 37103183 37103218 -106683237 + AT_rich Low_complexity Low_complexity 1 35 0 303 290 91 91 chr12 37104662 37104883 -106681572 + MIR SINE MIR 30 250 -12 272 198 103 52 chr12 37104955 37105071 -106681384 - HAL1b LINE L1 -2 1346 1225 236 128 209 47 chr12 37105043 37105129 -106681326 + L1ME4a LINE L1 5981 6080 -41 * 24 0 0 0 chr12 37105270 37105294 -106681161 + AT_rich Low_complexity Low_complexity 1 24 0 30 83 0 0 chr12 37105368 37105440 -106681015 + AT_rich Low_complexity Low_complexity 1 72 0 1248 217 120 57 chr12 37105661 37105765 -106680690 + MLT1D LTR MaLR 1 97 -408 1982 130 0 16 chr12 37105765 37106081 -106680374 + AluSx SINE Alu 1 311 -1 1248 217 120 57 chr12 37106081 37106451 -106680004 + MLT1D LTR MaLR 97 505 0 379 237 0 11 chr12 37106465 37106558 -106679897 - L1ME3A LINE L1 -285 5885 5794 230 259 0 0 chr12 37106588 37106642 -106679813 - L1ME3A LINE L1 -453 5717 5664 514 309 6 0 chr12 37106647 37106812 -106679643 - L1ME3A LINE L1 -604 5566 5401 263 226 0 0 chr12 37106825 37106878 -106679577 + MER96B DNA MER1_type? 3 55 -120 272 269 78 47 chr12 37106955 37107148 -106679307 - L1ME3A LINE L1 -1816 4330 4132 229 291 0 0 chr12 37107240 37107326 -106679129 + (TCTG)n Simple_repeat Simple_repeat 4 89 0 320 222 0 16 chr12 37107345 37107408 -106679047 + Tigger5 DNA MER2_type 1 62 -2261 1496 147 4 0 chr12 37107429 37107667 -106678788 + Tigger5 DNA MER2_type 2085 2323 0 1676 149 53 53 chr12 37107753 37107948 -106678507 - THE1C LTR MaLR 0 375 178 1877 154 3 10 chr12 37107948 37108240 -106678215 - AluSx SINE Alu -16 296 7 1676 149 53 53 chr12 37108240 37108419 -106678036 - THE1C LTR MaLR -196 179 1 394 363 62 14 chr12 37109003 37109292 -106677163 - HAL1b LINE L1 -415 933 631 22 35 0 0 chr12 37109866 37109895 -106676560 + AT_rich Low_complexity Low_complexity 1 29 0 994 207 36 44 chr12 37110155 37110406 -106676049 - MER96B DNA MER1_type? -168 249 1 400 340 153 0 chr12 37110651 37110854 -106675601 + MIR SINE MIR 25 258 -4 1257 157 143 50 chr12 37112300 37112643 -106673812 + THE1C LTR MaLR 1 375 0 1792 260 36 46 chr12 37112774 37113405 -106673050 - MLT1E2 LTR MaLR -1 625 1 735 247 89 23 chr12 37113644 37113903 -106672552 - L1ME2 LINE L1 -1 6163 5888 234 260 29 48 chr12 37113913 37114017 -106672438 - L1ME2 LINE L1 -356 5814 5713 11563 43 5 2 chr12 37114132 37116346 -106670109 - L1PA4 LINE L1 -9 6146 3928 459 329 25 16 chr12 37117079 37117395 -106669060 - L1MEc LINE L1 -4612 1784 1466 454 343 72 46 chr12 37117432 37118394 -106668061 - L1MEc LINE L1 -5388 1008 22 180 0 0 0 chr12 37118504 37118524 -106667931 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 297 332 83 36 chr12 37118890 37119083 -106667372 - MIR SINE MIR -58 204 3 509 338 101 31 chr12 37119172 37119560 -106666895 - L3 LINE CR1 -1 1576 1162 22 35 0 0 chr12 37121416 37121445 -106665010 + AT_rich Low_complexity Low_complexity 1 29 0 2181 12 0 0 chr12 37121860 37122109 -106664346 - L1HS LINE L1 -2 6153 5905 * 5710 13 0 0 chr12 37122107 37122992 -106663463 + L1HS LINE L1 5022 5906 -249 561 317 39 30 chr12 37123183 37123612 -106662843 + LTR33 LTR ERVL 1 464 -57 711 162 7 37 chr12 37123649 37123785 -106662670 - FLAM_C SINE Alu -1 132 1 547 345 114 11 chr12 37123842 37124438 -106662017 + ERVL LTR ERVL 2882 3593 -2171 1883 317 21 11 chr12 37124492 37125111 -106661344 + ERVL LTR ERVL 4056 4680 -1084 410 333 98 35 chr12 37125994 37126393 -106660062 + LTR33 LTR ERVL 31 454 -67 399 311 179 36 chr12 37126459 37126990 -106659465 + L1 LINE L1 2215 2821 -3325 22 0 0 0 chr12 37127125 37127147 -106659308 + AT_rich Low_complexity Low_complexity 1 22 0 1532 294 94 22 chr12 37128116 37129063 -106657392 - L1ME3A LINE L1 -4 6166 5152 232 309 123 0 chr12 37129084 37129246 -106657209 - L1ME3A LINE L1 -1034 5112 4931 882 265 98 15 chr12 37129252 37129732 -106656723 - L1ME3A LINE L1 -1329 4817 4298 316 340 145 35 chr12 37129753 37130153 -106656302 - L1ME3A LINE L1 -1871 4275 3832 455 204 72 98 chr12 37130190 37130359 -106656096 - L1MC4 LINE L1 -27 8015 7854 1981 145 76 17 chr12 37130359 37130703 -106655752 + THE1B LTR MaLR 1 364 0 455 204 72 98 chr12 37130703 37130797 -106655658 - L1MC4 LINE L1 -188 7854 7759 452 288 54 48 chr12 37130792 37131292 -106655163 - L1ME3A LINE L1 -2299 3847 3345 * 2604 246 69 16 chr12 37131381 37132174 -106654281 - L1ME1 LINE L1 -16 6150 5316 32 0 0 0 chr12 37132174 37132206 -106654249 + AT_rich Low_complexity Low_complexity 1 32 0 184 290 87 43 chr12 37133509 37133647 -106652808 - MIR SINE MIR -54 208 65 656 318 132 41 chr12 37133799 37134435 -106652020 + L2 LINE L2 2544 3245 -68 368 314 64 0 chr12 37134702 37134842 -106651613 + LTR16C LTR ERVL 234 382 -109 291 290 0 0 chr12 37135089 37135151 -106651304 + LTR33 LTR ERVL 307 368 -153 1038 239 58 12 chr12 37135679 37135985 -106650470 - L1ME2 LINE L1 -45 6117 5802 1030 108 0 19 chr12 37135985 37136142 -106650313 - MER4E LTR ERV1 0 766 613 2644 149 12 2 chr12 37136142 37136572 -106649883 + MER57B LTR ERV1 1 434 0 2914 173 11 60 chr12 37136572 37136879 -106649576 + MER57B-int LTR ERV1 1 269 -7268 1967 142 3 0 chr12 37136879 37137175 -106649280 - AluSx SINE Alu -10 302 6 2914 173 11 60 chr12 37137175 37137434 -106649021 + MER57B-int LTR ERV1 269 539 -6998 36 23 0 0 chr12 37137434 37137477 -106648978 + AT_rich Low_complexity Low_complexity 1 43 0 2097 105 0 0 chr12 37137477 37137762 -106648693 - AluY SINE Alu -26 285 1 1871 164 0 0 chr12 37138326 37138624 -106647831 + AluSq SINE Alu 1 298 -15 2177 113 3 0 chr12 37138640 37138941 -106647514 + AluSp SINE Alu 4 305 -8 1363 189 5 2 chr12 37138953 37139232 -106647223 - L1P4 LINE L1 -352 5822 5546 1247 85 28 11 chr12 37139247 37139423 -106647032 - AluY SINE Alu -20 291 113 993 195 0 0 chr12 37139573 37139742 -106646713 - AluSg/x SINE Alu -12 298 130 1893 134 17 3 chr12 37139877 37140168 -106646287 + AluSq SINE Alu 9 303 -10 420 299 52 26 chr12 37140299 37140654 -106645801 + L1ME3A LINE L1 5421 5784 -401 1984 145 3 0 chr12 37140670 37140980 -106645475 - AluSx SINE Alu -1 311 1 1938 126 3 17 chr12 37140980 37141281 -106645174 - AluSc SINE Alu -3 306 9 959 131 0 0 chr12 37141286 37141423 -106645032 - AluSq/x SINE Alu -175 137 1 290 208 52 21 chr12 37141462 37141558 -106644897 + L1ME3A LINE L1 5852 5950 -220 1510 147 4 28 chr12 37141602 37141854 -106644601 + AluSg/x SINE Alu 65 310 -2 311 156 0 0 chr12 37142207 37142252 -106644203 + Alu SINE Alu 2 46 -262 888 265 48 7 chr12 37142279 37142588 -106643867 + L1MA9 LINE L1 5953 6274 -38 1901 141 29 16 chr12 37142614 37142920 -106643535 + AluSg SINE Alu 1 310 0 225 0 0 0 chr12 37142922 37142947 -106643508 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 261 0 0 0 chr12 37142946 37142975 -106643480 + (GA)n Simple_repeat Simple_repeat 2 30 0 265 354 63 19 chr12 37143602 37143760 -106642695 + MIR SINE MIR 1 165 -97 4943 169 29 10 chr12 37144284 37145225 -106641230 + L1MC2 LINE L1 5361 6319 -25 21 57 0 0 chr12 37145230 37145265 -106641190 + AT_rich Low_complexity Low_complexity 1 35 0 1830 172 0 0 chr12 37145265 37145550 -106640905 - AluY SINE Alu -24 287 3 872 210 0 0 chr12 37145555 37145712 -106640743 - AluJb SINE Alu -19 293 137 1025 206 9 2 chr12 37145755 37147534 -106638921 - ALR/Alpha Satellite centromeric 0 1791 1 1521 22 0 0 chr12 37147534 37147712 -106638743 - L1PA3 LINE L1 -341 5814 5637 2795 30 0 0 chr12 37147712 37148040 -106638415 + L1PA3 LINE L1 5825 6155 0 878 213 9 7 chr12 37148041 37148975 -106637480 - ALR/Alpha Satellite centromeric 0 1618 394 2171 84 56 0 chr12 37148975 37149261 -106637194 - AluY SINE Alu -9 302 1 878 213 9 7 chr12 37149261 37149656 -106636799 - ALR/Alpha Satellite centromeric -1224 394 1 974 198 7 11 chr12 37149669 37156264 -106630191 - ALR/Alpha Satellite centromeric -1 6568 1 405 284 126 39 chr12 37156464 37156957 -106629498 + SST1 Satellite centromeric 223 758 -805 240 59 0 0 chr12 37157345 37157379 -106629076 + (TG)n Simple_repeat Simple_repeat 1 34 0 413 297 67 61 chr12 37158467 37159005 -106627450 + SST1 Satellite centromeric 132 672 -891 370 291 62 64 chr12 37159431 37159820 -106626635 + SST1 Satellite centromeric 1148 1535 -28 263 184 11 0 chr12 37159826 37159913 -106626542 + (TG)n Simple_repeat Simple_repeat 1 88 0 967 198 6 5 chr12 37160568 37164419 -106622036 - ALR/Alpha Satellite centromeric -1 3852 1 2389 266 69 54 chr12 37164710 37164966 -106621489 + SST1 Satellite centromeric 1 252 -1311 213 65 0 0 chr12 37164966 37164997 -106621458 + (CTGGGG)n Simple_repeat Simple_repeat 3 33 0 2389 266 69 54 chr12 37164997 37166269 -106620186 + SST1 Satellite centromeric 252 1552 -11 324 119 0 0 chr12 37166290 37166349 -106620106 + (TG)n Simple_repeat Simple_repeat 2 60 0 222 220 17 0 chr12 37166349 37166408 -106620047 + CT-rich Low_complexity Low_complexity 2 61 0 2506 266 51 54 chr12 37167148 37167399 -106619056 - SST1 Satellite centromeric -867 2190 1940 260 51 0 26 chr12 37167399 37167438 -106619017 + (CTGGGG)n Simple_repeat Simple_repeat 2 39 0 2506 266 51 54 chr12 37167438 37169346 -106617109 - SST1 Satellite centromeric -1117 1940 1 215 233 17 0 chr12 37170176 37170236 -106616219 + GA-rich Low_complexity Low_complexity 2 62 0 554 198 0 78 chr12 37170260 37170477 -106615978 - SST1 Satellite centromeric -1 1562 1363 468 35 0 0 chr12 37171965 37172023 -106614432 + (TG)n Simple_repeat Simple_repeat 1 58 0 202 91 0 45 chr12 37173047 37173091 -106613364 + (TTA)n Simple_repeat Simple_repeat 1 42 0 183 80 0 0 chr12 37173174 37173199 -106613256 + (CA)n Simple_repeat Simple_repeat 1 25 0 186 127 32 48 chr12 37174698 37174761 -106611694 + G-rich Low_complexity Low_complexity 1 62 0 373 191 0 0 chr12 37175002 37175070 -106611385 + MER53 DNA DNA 122 189 0 244 25 75 0 chr12 37175077 37175117 -106611338 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 10079 29 0 198 chr12 37175117 37176818 -106609637 - SVA Other Other -19 1367 3 186 43 0 0 chr12 37176819 37176842 -106609613 + (GGGAGA)n Simple_repeat Simple_repeat 1 23 0 910 211 0 0 chr12 37177266 37177432 -106609023 - FRAM SINE Alu 0 166 1 339 78 0 0 chr12 37177784 37177835 -106608620 + (GA)n Simple_repeat Simple_repeat 2 52 0 595 276 198 0 chr12 37180551 37180768 -106605687 + MIR SINE MIR 2 261 -1 929 128 23 41 chr12 37180925 37180967 -106605488 - MER5B DNA MER1_type -1 177 136 2281 110 3 3 chr12 37180967 37181277 -106605178 - AluSq SINE Alu -3 310 1 929 128 23 41 chr12 37181277 37181406 -106605049 - MER5B DNA MER1_type -42 136 9 479 269 48 41 chr12 37182224 37182369 -106604086 + MIR SINE MIR 27 172 -90 415 267 68 78 chr12 37182527 37182718 -106603737 - MIR SINE MIR -61 201 13 * 998 229 24 43 chr12 37182656 37182725 -106603730 + MIR SINE MIR 13 82 -180 2059 123 2 121 chr12 37182725 37183139 -106603316 - MER47A DNA MER2_type -1 365 1 998 229 24 43 chr12 37183139 37183322 -106603133 + MIR SINE MIR 82 260 -2 208 337 41 20 chr12 37184181 37184279 -106602176 - MIR SINE MIR -119 143 44 23 0 0 0 chr12 37184522 37184545 -106601910 + GC_rich Low_complexity Low_complexity 1 23 0 396 310 19 0 chr12 37185009 37185167 -106601288 - MIR3 SINE MIR 0 208 48 317 230 180 0 chr12 37185168 37185268 -106601187 - L2 LINE L2 -2 3270 3153 414 253 11 0 chr12 37186898 37186989 -106599466 - MIR SINE MIR -115 147 56 242 294 64 37 chr12 37187244 37187353 -106599102 + MIR3 SINE MIR 11 122 -86 209 276 16 123 chr12 37188071 37188314 -106598141 - L3b LINE CR1 -189 1394 1178 1342 250 113 26 chr12 37188673 37189215 -106597240 - L2 LINE L2 -23 3290 2697 2076 139 0 0 chr12 37189215 37189503 -106596952 - AluSg SINE Alu -22 288 1 1342 250 113 26 chr12 37189503 37189680 -106596775 - L2 LINE L2 -616 2697 2537 210 158 18 105 chr12 37192018 37192075 -106594380 - MIR3 SINE MIR 0 208 157 2199 124 0 3 chr12 37192270 37192576 -106593879 - AluSx SINE Alu -7 305 1 661 279 60 0 chr12 37192757 37192940 -106593515 - MIR SINE MIR -10 252 59 204 292 21 0 chr12 37193045 37193093 -106593362 - MIR SINE MIR -123 85 37 770 99 9 0 chr12 37193132 37193243 -106593212 - HY1 scRNA scRNA 0 112 1 334 217 19 29 chr12 37193352 37193513 -106592942 + MIR SINE MIR 29 260 -2 22 88 0 0 chr12 37194570 37194627 -106591828 + AT_rich Low_complexity Low_complexity 1 57 0 198 331 83 24 chr12 37196180 37196349 -106590106 + L2 LINE L2 2353 2531 -783 * 364 228 109 0 chr12 37196321 37196413 -106590042 - L2 LINE L2 -10 3303 3202 1383 137 99 99 chr12 37196904 37197197 -106589258 + AluJo SINE Alu 9 301 -11 2002 129 0 3 chr12 37197203 37197490 -106588965 + AluSx SINE Alu 22 307 -5 573 226 83 33 chr12 37198403 37198584 -106587871 + L2 LINE L2 3122 3311 -2 474 263 53 38 chr12 37198601 37198734 -106587721 + L2 LINE L2 3137 3271 -1 1881 166 3 16 chr12 37199146 37199454 -106587001 + AluJb SINE Alu 1 304 -8 404 327 51 0 chr12 37201825 37201981 -106584474 + L2 LINE L2 3101 3264 -8 227 54 27 0 chr12 37202264 37202301 -106584154 + (CA)n Simple_repeat Simple_repeat 2 39 0 325 325 56 0 chr12 37202649 37202775 -106583680 - MIR3 SINE MIR -6 202 70 2120 134 3 3 chr12 37202776 37203081 -106583374 + AluSx SINE Alu 1 305 -7 287 229 0 0 chr12 37203118 37203166 -106583289 - MIR SINE MIR -124 84 37 1708 153 73 0 chr12 37203238 37203499 -106582956 - AluJb SINE Alu -32 280 1 496 225 95 35 chr12 37203499 37203668 -106582787 - MIR SINE MIR -71 191 13 430 273 182 0 chr12 37204406 37204549 -106581906 - MER5A DNA MER1_type 0 189 21 621 342 63 21 chr12 37204690 37204789 -106581666 + L2 LINE L2 2959 3052 -261 2150 105 0 0 chr12 37204789 37205118 -106581337 - AluSp SINE Alu 0 329 1 621 342 63 21 chr12 37205118 37205350 -106581105 + L2 LINE L2 3052 3305 -8 2054 127 7 0 chr12 37205351 37205658 -106580797 + AluSx SINE Alu 1 309 -3 549 333 7 0 chr12 37205996 37206140 -106580315 - L2 LINE L2 -1 3271 3127 318 235 62 0 chr12 37207335 37207416 -106579039 - MIR3 SINE MIR -15 193 108 579 208 125 60 chr12 37208303 37208519 -106577936 - MIR SINE MIR -10 252 23 307 114 0 0 chr12 37208636 37208680 -106577775 + MIR SINE MIR 103 146 -62 347 304 24 8 chr12 37209019 37209144 -106577311 - LTR33 LTR ERVL -5 516 390 375 236 198 62 chr12 37209196 37209438 -106577017 - LTR33 LTR ERVL -235 286 12 313 225 180 18 chr12 37209789 37209900 -106576555 + L2 LINE L2 3142 3270 -2 681 231 87 12 chr12 37210477 37210650 -106575805 + MIR SINE MIR 13 198 -64 709 176 0 0 chr12 37210663 37210771 -106575684 + FLAM_A SINE Alu 1 108 -34 1879 117 34 24 chr12 37210780 37211071 -106575384 - AluSq SINE Alu -19 294 1 1924 140 6 10 chr12 37211719 37212033 -106574422 + AluSq SINE Alu 1 313 0 318 259 206 35 chr12 37212102 37212272 -106574183 + MIR SINE MIR 64 262 0 266 178 0 68 chr12 37212488 37212561 -106573894 + L2 LINE L2 3163 3230 -83 2506 156 13 9 chr12 37213097 37213564 -106572891 + L1MB7 LINE L1 5716 6184 0 319 227 133 0 chr12 37214264 37214339 -106572116 + MIR3 SINE MIR 76 160 -48 466 342 77 0 chr12 37214586 37214782 -106571673 + MIR SINE MIR 49 259 -3 1883 153 0 3 chr12 37214802 37215096 -106571359 - AluSx SINE Alu -19 293 1 359 290 132 87 chr12 37215160 37215563 -106570892 - MLT1J2 LTR MaLR -21 429 9 426 256 160 0 chr12 37215985 37216141 -106570314 + MIR SINE MIR 70 250 -12 259 287 25 96 chr12 37216472 37216629 -106569826 + MIR3 SINE MIR 40 185 -23 1130 243 28 0 chr12 37216993 37217244 -106569211 - MIR SINE MIR 0 262 5 786 230 33 35 chr12 37217243 37217500 -106568955 - MIR SINE MIR 0 262 7 * 2217 289 36 44 chr12 37219998 37221036 -106565419 - SST1 Satellite centromeric -534 1029 1 279 93 0 0 chr12 37221736 37221779 -106564676 + (CA)n Simple_repeat Simple_repeat 2 44 0 250 182 18 0 chr12 37221783 37221838 -106564617 + GA-rich Low_complexity Low_complexity 1 56 0 297 0 0 0 chr12 37221843 37221876 -106564579 + (CA)n Simple_repeat Simple_repeat 2 34 0 1205 186 63 107 chr12 37222080 37222462 -106563993 - MLT1A1 LTR MaLR 0 365 1 926 245 88 49 chr12 37222839 37223157 -106563298 - L1P4 LINE L1 -364 5804 5500 2472 108 3 43 chr12 37223157 37223527 -106562928 + THE1A LTR MaLR 1 355 0 11223 114 4 1 chr12 37223527 37225102 -106561353 + THE1A-int LTR MaLR 1 1580 0 2242 141 0 22 chr12 37225102 37225465 -106560990 + THE1A LTR MaLR 1 355 0 926 245 88 49 chr12 37225465 37225749 -106560706 - L1P4 LINE L1 -668 5500 5229 1530 137 105 14 chr12 37225749 37226034 -106560421 - AluSx SINE Alu -1 311 1 926 245 88 49 chr12 37226034 37226515 -106559940 - L1P4 LINE L1 -939 5229 4650 339 247 55 0 chr12 37226517 37226590 -106559865 + L1MC4 LINE L1 6625 6701 -1341 297 0 0 0 chr12 37226590 37226623 -106559832 + (GA)n Simple_repeat Simple_repeat 2 34 0 1485 171 0 38 chr12 37226624 37226916 -106559539 - AluJo SINE Alu -31 281 1 21 36 0 0 chr12 37227675 37227703 -106558752 + AT_rich Low_complexity Low_complexity 1 28 0 1904 142 0 0 chr12 37227879 37228181 -106558274 - AluSq SINE Alu 0 302 1 310 297 30 10 chr12 37228229 37228330 -106558125 - HAL1b LINE L1 -10 1338 1236 1826 140 3 3 chr12 37228423 37228708 -106557747 - AluSq SINE Alu -26 287 3 813 200 28 0 chr12 37228904 37229049 -106557406 - AluJo SINE Alu -162 150 2 645 220 0 0 chr12 37229508 37229649 -106556806 + FLAM_C SINE Alu 1 141 0 709 253 6 0 chr12 37229649 37229815 -106556640 + AluJb SINE Alu 132 298 -14 2143 159 78 8 chr12 37229815 37230199 -106556256 + Tigger1 DNA MER2_type 1066 1476 -942 278 264 94 45 chr12 37231102 37231344 -106555111 + MIR SINE MIR 1 262 0 871 237 98 40 chr12 37231646 37231920 -106554535 + MLT1A2 LTR MaLR 85 374 0 33 0 0 0 chr12 37232993 37233026 -106553429 + AT_rich Low_complexity Low_complexity 1 33 0 1060 191 17 13 chr12 37233295 37233531 -106552924 + AluJb SINE Alu 1 237 -75 299 320 5 25 chr12 37283537 37283729 -106502726 - SST1 Satellite centromeric -1098 465 277 219 36 0 0 chr12 37283729 37283757 -106502698 + (CCCCAG)n Simple_repeat Simple_repeat 2 29 0 246 231 0 0 chr12 37283773 37283825 -106502630 - SST1 Satellite centromeric -1511 52 1 214 272 25 0 chr12 37284526 37284607 -106501848 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 * 221 180 20 0 chr12 37284564 37284614 -106501841 + GA-rich Low_complexity Low_complexity 2 52 0 396 55 0 0 chr12 37284623 37284678 -106501777 + (CA)n Simple_repeat Simple_repeat 2 56 0 2941 279 52 56 chr12 37284699 37286257 -106500198 - SST1 Satellite centromeric -11 1552 1 216 163 0 0 chr12 37286956 37286999 -106499456 + (CA)n Simple_repeat Simple_repeat 2 44 0 267 206 16 0 chr12 37287003 37287066 -106499389 + GA-rich Low_complexity Low_complexity 1 64 0 270 0 0 0 chr12 37288435 37288465 -106497990 + (TA)n Simple_repeat Simple_repeat 2 31 0 225 94 0 0 chr12 37289842 37289874 -106496581 + (GA)n Simple_repeat Simple_repeat 2 33 0 903 291 71 2 chr12 37291207 37291671 -106494784 - L1M4 LINE L1 -3404 2742 2247 26 30 0 0 chr12 37291672 37291705 -106494750 + AT_rich Low_complexity Low_complexity 1 33 0 783 182 176 6 chr12 37291874 37292044 -106494411 - AluSg/x SINE Alu -27 282 84 330 229 84 0 chr12 37292044 37292127 -106494328 + MER119 DNA MER1_type 75 164 -419 2041 132 0 28 chr12 37292797 37293116 -106493339 - AluSg SINE Alu 0 310 1 279 322 42 8 chr12 37293450 37293568 -106492887 - MER94 DNA DNA -2 132 11 1870 223 85 8 chr12 37293666 37294150 -106492305 - MER90 LTR ERV1 0 614 94 198 0 0 0 chr12 37294248 37294270 -106492185 + (T)n Simple_repeat Simple_repeat 1 22 0 547 256 126 14 chr12 37294933 37295140 -106491315 + MIR SINE MIR 30 259 -3 181 250 135 0 chr12 37295556 37295608 -106490847 - MIR SINE MIR -133 75 17 344 243 29 48 chr12 37295665 37295768 -106490687 - MIR SINE MIR -70 192 92 218 369 18 9 chr12 37295982 37296093 -106490362 + L2 LINE L2 2748 2859 -455 438 20 0 0 chr12 37296289 37296340 -106490115 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1715 148 0 24 chr12 37296362 37296653 -106489802 - AluSq SINE Alu -19 294 11 1934 118 17 10 chr12 37296767 37297064 -106489391 - AluSq SINE Alu -14 299 1 908 136 7 0 chr12 37297067 37297207 -106489248 - AluY SINE Alu -170 141 1 204 40 0 0 chr12 37298127 37298152 -106488303 + (CA)n Simple_repeat Simple_repeat 2 26 0 1250 173 120 33 chr12 37298229 37298530 -106487925 - SST1 Satellite centromeric 0 1563 1237 844 164 13 13 chr12 37298535 37298687 -106487768 + AluSg/x SINE Alu 157 308 -4 7404 149 23 17 chr12 37298777 37300161 -106486294 - SST1 Satellite centromeric -170 1393 1 1916 314 59 38 chr12 37300711 37301672 -106484783 - SST1 Satellite centromeric -324 1239 245 324 94 0 0 chr12 37301672 37301725 -106484730 + (CCCCAG)n Simple_repeat Simple_repeat 5 57 0 1916 314 59 38 chr12 37301725 37301976 -106484479 - SST1 Satellite centromeric -1318 245 1 222 200 30 50 chr12 37302136 37302236 -106484219 + GA-rich Low_complexity Low_complexity 5 102 0 247 203 17 0 chr12 37302783 37302842 -106483613 + GA-rich Low_complexity Low_complexity 1 60 0 462 18 0 0 chr12 37302843 37302898 -106483557 + (CA)n Simple_repeat Simple_repeat 2 56 0 2458 272 45 61 chr12 37302936 37304336 -106482119 - SST1 Satellite centromeric -27 1536 159 203 203 34 0 chr12 37304419 37304478 -106481977 + GA-rich Low_complexity Low_complexity 1 61 0 456 72 0 0 chr12 37304478 37304547 -106481908 + (CA)n Simple_repeat Simple_repeat 2 70 0 2130 267 71 55 chr12 37304568 37305841 -106480614 - SST1 Satellite centromeric -11 1552 255 258 56 0 0 chr12 37305841 37305877 -106480578 + (CCCCAG)n Simple_repeat Simple_repeat 3 38 0 2130 267 71 55 chr12 37305877 37305976 -106480479 - SST1 Satellite centromeric -1308 255 159 651 65 0 0 chr12 37306117 37306210 -106480245 + (CA)n Simple_repeat Simple_repeat 2 94 0 2316 261 57 50 chr12 37306231 37307516 -106478939 - SST1 Satellite centromeric -11 1552 256 267 54 0 0 chr12 37307516 37307553 -106478902 + (CCCCAG)n Simple_repeat Simple_repeat 2 38 0 2316 261 57 50 chr12 37307553 37307652 -106478803 - SST1 Satellite centromeric -1307 256 159 504 68 0 0 chr12 37307794 37307867 -106478588 + (CA)n Simple_repeat Simple_repeat 2 74 0 2451 288 54 42 chr12 37307888 37309171 -106477284 - SST1 Satellite centromeric -11 1552 247 345 75 0 0 chr12 37309171 37309224 -106477231 + (CCCCAG)n Simple_repeat Simple_repeat 5 57 0 2451 288 54 42 chr12 37309224 37309474 -106476981 - SST1 Satellite centromeric -1316 247 1 211 222 81 30 chr12 37309634 37309733 -106476722 + (CAGGG)n Simple_repeat Simple_repeat 2 105 0 222 220 17 0 chr12 37310281 37310340 -106476115 + GA-rich Low_complexity Low_complexity 2 61 0 465 62 0 0 chr12 37310340 37310405 -106476050 + (CA)n Simple_repeat Simple_repeat 2 66 0 2904 274 69 42 chr12 37310409 37311678 -106474777 - SST1 Satellite centromeric -1 1562 244 216 0 0 0 chr12 37311678 37311702 -106474753 + (CCCCAG)n Simple_repeat Simple_repeat 4 27 0 2904 274 69 42 chr12 37311702 37311953 -106474502 - SST1 Satellite centromeric -1319 244 1 215 192 27 41 chr12 37312690 37312763 -106473692 + (CAGAGA)n Simple_repeat Simple_repeat 6 77 0 2688 278 52 56 chr12 37312764 37314332 -106472123 - SST1 Satellite centromeric -1 1562 1 233 293 0 0 chr12 37315029 37315128 -106471327 + (CAGA)n Simple_repeat Simple_repeat 2 100 0 * 271 217 14 0 chr12 37315075 37315144 -106471311 + GA-rich Low_complexity Low_complexity 2 71 0 279 0 0 0 chr12 37315144 37315175 -106471280 + (CA)n Simple_repeat Simple_repeat 2 32 0 967 211 57 104 chr12 37315379 37315762 -106470693 - MLT1A1 LTR MaLR 0 365 1 256 45 0 45 chr12 37316164 37316208 -106470247 + (GAAAA)n Simple_repeat Simple_repeat 3 44 0 691 227 245 9 chr12 37316218 37316544 -106469911 + L1MC3 LINE L1 5965 6367 -1418 2227 122 0 3 chr12 37316561 37316864 -106469591 + AluSx SINE Alu 1 302 -10 676 192 35 20 chr12 37316873 37317041 -106469414 + L1M4 LINE L1 2912 3076 -3070 2758 23 0 0 chr12 37317041 37317342 -106469113 + AluY SINE Alu 1 301 -10 676 192 35 20 chr12 37317342 37317353 -106469102 + L1M4 LINE L1 3076 3085 -3061 2073 113 0 30 chr12 37317353 37317653 -106468802 + AluSx SINE Alu 1 291 -21 676 192 35 20 chr12 37317653 37317679 -106468776 + L1M4 LINE L1 3085 3112 -3034 817 199 6 0 chr12 37317797 37317958 -106468497 - AluJo/FRAM SINE Alu -4 298 137 1323 146 26 0 chr12 37317961 37318187 -106468268 - AluSc SINE Alu -3 306 75 2715 33 0 3 chr12 37318187 37318487 -106467968 - AluY SINE Alu -12 299 1 246 32 0 0 chr12 37318503 37318534 -106467921 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 560 204 9 0 chr12 37318538 37318651 -106467804 - FLAM_C SINE Alu -19 114 1 780 249 63 54 chr12 37318791 37319276 -106467179 - L1ME LINE L1 -678 5488 4997 821 132 0 33 chr12 37319561 37319682 -106466773 - AluY SINE Alu -194 117 1 952 151 53 5 chr12 37320703 37320909 -106465546 + MER33 DNA MER1_type 1 216 -108 1102 245 158 43 chr12 37320931 37321408 -106465047 + L1MC4a LINE L1 7278 7717 -91 824 313 84 15 chr12 37321408 37321871 -106464584 + ERVL LTR ERVL 4120 4614 -1150 338 202 0 19 chr12 37322013 37322117 -106464338 + (ATG)n Simple_repeat Simple_repeat 3 104 0 300 234 21 106 chr12 37322536 37322635 -106463820 - MIR SINE MIR -26 236 151 2359 192 16 4 chr12 37322635 37323124 -106463331 - L1MB2 LINE L1 -7 6164 5670 300 234 21 106 chr12 37323124 37323165 -106463290 - MIR SINE MIR -111 151 108 221 274 32 0 chr12 37323434 37323496 -106462959 - L2 LINE L2 -1 3312 3249 555 293 58 31 chr12 37323639 37323864 -106462591 - MIR SINE MIR -1 261 31 1333 160 0 0 chr12 37324776 37324995 -106461460 + AluSg/x SINE Alu 94 312 0 2159 139 3 0 chr12 37324995 37325304 -106461151 + AluSp SINE Alu 1 310 -3 685 224 12 48 chr12 37325307 37325472 -106460983 + AluJo/FRAM SINE Alu 137 295 -7 680 192 0 0 chr12 37325683 37325803 -106460652 + FLAM_C SINE Alu 2 121 -22 717 19 29 10 chr12 37325803 37325906 -106460549 + (TAAAA)n Simple_repeat Simple_repeat 2 106 0 353 157 0 57 chr12 37325929 37325999 -106460456 + AluJ/FRAM SINE Alu 225 290 -12 1375 193 4 0 chr12 37326459 37326703 -106459752 + AluJb SINE Alu 1 245 -67 1901 140 7 7 chr12 37326703 37327004 -106459451 + AluSx SINE Alu 34 334 0 1324 205 29 33 chr12 37327020 37327327 -106459128 + AluJo SINE Alu 6 311 -1 3580 189 64 28 chr12 37327383 37328116 -106458339 - MER21B LTR ERV1 -1 862 94 2333 89 16 32 chr12 37328116 37328431 -106458024 + AluSx SINE Alu 3 312 0 3580 189 64 28 chr12 37328431 37328529 -106457926 - MER21B LTR ERV1 -769 94 1 1762 182 15 40 chr12 37328830 37329226 -106457229 - LTR25 LTR ERV1 -47 747 362 674 158 9 0 chr12 37329226 37329340 -106457115 + LTR46 LTR ERV1 1 115 -345 578 299 53 10 chr12 37329467 37329674 -106456781 - MIR SINE MIR -15 247 32 348 299 19 0 chr12 37331231 37331338 -106455117 - L2 LINE L2 -18 3254 3146 2279 130 0 0 chr12 37332032 37332339 -106454116 - AluSg SINE Alu -3 307 1 294 305 42 8 chr12 37332675 37332793 -106453662 - MER94 DNA DNA -2 132 11 1777 226 82 10 chr12 37332891 37333377 -106453078 - MER90 LTR ERV1 0 614 94 527 251 128 15 chr12 37334148 37334351 -106452104 + MIR SINE MIR 30 255 -7 363 214 48 68 chr12 37334880 37334983 -106451472 - MIR SINE MIR -70 192 92 186 408 10 0 chr12 37335197 37335300 -106451155 + L2 LINE L2 2748 2851 -463 312 70 0 0 chr12 37335504 37335547 -106450908 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1852 141 0 24 chr12 37335569 37335860 -106450595 - AluSq SINE Alu -19 294 11 2064 108 20 10 chr12 37335974 37336271 -106450184 - AluSq SINE Alu -13 300 1 954 128 14 0 chr12 37336272 37336413 -106450042 - AluY SINE Alu -168 143 1 1252 173 120 33 chr12 37337433 37337734 -106448721 - SST1 Satellite centromeric 0 1563 1237 885 161 13 7 chr12 37337739 37337894 -106448561 + AluSg/x SINE Alu 157 312 0 7204 154 20 26 chr12 37337986 37339388 -106447067 - SST1 Satellite centromeric -170 1393 1 2176 274 52 36 chr12 37340210 37340899 -106445556 - SST1 Satellite centromeric -607 956 246 243 61 0 0 chr12 37340899 37340932 -106445523 + (CCCCAG)n Simple_repeat Simple_repeat 1 33 0 2176 274 52 36 chr12 37340932 37341183 -106445272 - SST1 Satellite centromeric -1316 247 1 363 98 0 0 chr12 37341975 37342036 -106444419 + (CA)n Simple_repeat Simple_repeat 2 62 0 2194 279 41 47 chr12 37342057 37343303 -106443152 - SST1 Satellite centromeric -11 1552 315 308 238 69 20 chr12 37343471 37343572 -106442883 - L1ME3A LINE L1 -221 5949 5844 23 0 0 0 chr12 37343628 37343651 -106442804 + AT_rich Low_complexity Low_complexity 1 23 0 346 321 108 12 chr12 37343665 37343974 -106442481 - L1ME3A LINE L1 -479 5642 5322 1017 128 0 0 chr12 37344112 37344253 -106442202 - AluSg/x SINE Alu -18 292 152 3651 187 54 7 chr12 37344254 37345329 -106441126 - L1MB7 LINE L1 -69 6115 4997 662 323 123 38 chr12 37345488 37345887 -106440568 - L1MEc LINE L1 -4576 1734 1302 627 266 94 12 chr12 37345895 37346214 -106440241 - L1MEc LINE L1 -4879 1240 896 277 333 34 54 chr12 37346334 37346481 -106439974 + MIR SINE MIR 100 243 -19 378 323 134 28 chr12 37346490 37346744 -106439711 + L1M4 LINE L1 4385 4665 -1481 2194 120 7 0 chr12 37346747 37347055 -106439400 + AluY SINE Alu 1 310 -1 482 261 52 33 chr12 37347674 37347827 -106438628 - MIR SINE MIR -99 163 8 643 245 107 15 chr12 37347867 37348063 -106438392 + MIR SINE MIR 48 261 -1 444 226 0 0 chr12 37348938 37349062 -106437393 + (TCCA)n Simple_repeat Simple_repeat 3 126 0 283 304 128 14 chr12 37349509 37349666 -106436789 + MIR SINE MIR 40 204 -58 315 203 0 0 chr12 37349765 37349824 -106436631 - MIR SINE MIR -89 119 61 308 260 80 0 chr12 37349832 37349932 -106436523 + MIR SINE MIR 35 142 -66 184 340 181 17 chr12 37351339 37351577 -106434878 - L2 LINE L2 -459 2855 2579 369 229 0 0 chr12 37352246 37352351 -106434104 + (ATG)n Simple_repeat Simple_repeat 3 107 0 566 210 0 11 chr12 37352377 37352558 -106433897 + (ATG)n Simple_repeat Simple_repeat 2 180 0 255 264 24 56 chr12 37352764 37352889 -106433566 - L1ME LINE L1 -544 5620 5500 2266 106 11 44 chr12 37352896 37353263 -106433192 + THE1A LTR MaLR 1 355 0 10370 124 7 1 chr12 37353263 37354833 -106431622 + THE1A-int LTR MaLR 1 1580 0 2239 143 14 22 chr12 37354833 37355191 -106431264 + THE1A LTR MaLR 1 355 0 22 0 0 0 chr12 37355362 37355384 -106431071 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr12 37356296 37356321 -106430134 + AT_rich Low_complexity Low_complexity 1 25 0 39 38 0 0 chr12 37356989 37357042 -106429413 + AT_rich Low_complexity Low_complexity 1 53 0 247 291 29 80 chr12 37358306 37358481 -106427974 + MLT1E2 LTR MaLR 8 173 -453 671 150 52 146 chr12 37360413 37360680 -106425775 - L1MA9 LINE L1 -1 6311 6070 1508 196 39 4 chr12 37360697 37360977 -106425478 - AluJo SINE Alu -11 301 12 1956 201 51 32 chr12 37360988 37362144 -106424311 - L1MA9 LINE L1 -527 5785 4560 2198 104 0 36 chr12 37362144 37362453 -106424002 - AluSx SINE Alu -12 300 3 1956 201 51 32 chr12 37362453 37362765 -106423690 - L1MA9 LINE L1 -1752 4560 4255 243 0 0 0 chr12 37363156 37363183 -106423272 + (TG)n Simple_repeat Simple_repeat 2 28 0 1155 284 52 36 chr12 37363602 37364400 -106422055 + L1M4 LINE L1 3396 4266 -1880 1273 186 49 85 chr12 37364400 37364788 -106421667 - LTR47B LTR ERVL -69 374 1 2141 349 58 15 chr12 37364982 37366127 -106420328 - PABL_B-int LTR ERV1 -321 6801 5607 523 316 62 62 chr12 37366766 37367251 -106419204 - HERVL18 LTR ERVL -1249 4206 3610 250 386 15 10 chr12 37368351 37368548 -106417907 - HERVL18 LTR ERVL -4326 1721 1524 190 229 24 108 chr12 37370222 37370305 -106416150 + MIR SINE MIR 117 192 -70 181 333 0 42 chr12 37371609 37371681 -106414774 + MIR3 SINE MIR 102 170 -38 1286 168 47 33 chr12 37372951 37373225 -106413230 + L1MB3 LINE L1 5904 6181 -2 443 275 8 8 chr12 37373234 37373365 -106413090 + L1ME3A LINE L1 5821 5951 -219 687 277 146 29 chr12 37373557 37374037 -106412418 + L1ME LINE L1 511 1046 -5024 3314 171 78 119 chr12 37374635 37375453 -106411002 - LTR1 LTR ERV1 0 785 1 207 300 0 0 chr12 37375991 37376051 -106410404 + G-rich Low_complexity Low_complexity 1 60 0 454 214 11 0 chr12 37377023 37377112 -106409343 + MER33 DNA MER1_type 9 98 -226 309 51 0 0 chr12 37377133 37377172 -106409283 + (TG)n Simple_repeat Simple_repeat 2 40 0 622 193 104 83 chr12 37377745 37377937 -106408518 - MLT1A1 LTR MaLR -169 196 1 895 243 91 61 chr12 37378310 37378634 -106407821 - L1P4 LINE L1 -364 5804 5491 2581 105 3 43 chr12 37378634 37379004 -106407451 + THE1A LTR MaLR 1 355 0 11713 120 2 1 chr12 37379004 37380582 -106405873 + THE1A-int LTR MaLR 1 1580 0 2306 139 11 22 chr12 37380582 37380941 -106405514 + THE1A LTR MaLR 1 355 0 895 243 91 61 chr12 37380941 37381225 -106405230 - L1P4 LINE L1 -677 5491 5217 1510 140 105 25 chr12 37381225 37381511 -106404944 - AluSx SINE Alu -3 309 1 895 243 91 61 chr12 37381511 37381996 -106404459 - L1P4 LINE L1 -951 5217 4647 198 0 0 0 chr12 37382002 37382024 -106404431 + (GA)n Simple_repeat Simple_repeat 2 23 0 1439 189 0 42 chr12 37382024 37382310 -106404145 - AluJo SINE Alu -38 274 1 21 36 0 0 chr12 37383075 37383103 -106403352 + AT_rich Low_complexity Low_complexity 1 28 0 2113 142 0 0 chr12 37383279 37383582 -106402873 - AluSq SINE Alu -10 303 1 1855 147 3 3 chr12 37383828 37384114 -106402341 - AluSq SINE Alu -25 288 3 848 189 0 0 chr12 37384337 37384469 -106401986 - FLAM_C SINE Alu -1 132 1 1449 204 32 3 chr12 37384924 37385047 -106401408 + AluJb SINE Alu 1 119 -193 294 29 0 0 chr12 37385047 37385082 -106401373 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1449 204 32 3 chr12 37385082 37385243 -106401212 + AluJb SINE Alu 119 293 -19 329 134 354 37 chr12 37385246 37385328 -106401127 + Tigger1 DNA MER2_type 1066 1173 -1245 598 117 0 10 chr12 37385328 37385431 -106401024 + L1P LINE L1 3856 3957 -2189 777 269 72 15 chr12 37385604 37385938 -106400517 - L1M4 LINE L1 -1147 4999 4647 1094 74 0 9 chr12 37385950 37386180 -106400275 + (TA)n Simple_repeat Simple_repeat 1 228 0 1506 192 0 34 chr12 37386190 37386482 -106399973 - AluJo SINE Alu -30 282 1 2152 110 0 0 chr12 37387448 37387750 -106398705 - AluSq SINE Alu 0 302 1 1884 164 0 3 chr12 37387995 37388282 -106398173 - AluSq SINE Alu -25 288 3 200 152 212 30 chr12 37388403 37388469 -106397986 + MIR3 SINE MIR 129 206 -2 776 199 0 8 chr12 37388513 37388644 -106397811 - FLAM_C SINE Alu -3 130 1 1626 177 3 36 chr12 37389103 37389408 -106397047 + AluJb SINE Alu 1 295 -17 588 111 248 26 chr12 37389410 37389527 -106396928 + Tigger1 DNA MER2_type 1066 1208 -1210 * 5277 140 0 45 chr12 37389515 37389755 -106396700 + Tigger1 DNA MER2_type 1545 1794 -624 2088 128 3 0 chr12 37389755 37390043 -106396412 - AluSp SINE Alu -24 289 1 5277 140 0 45 chr12 37390043 37390578 -106395877 + Tigger1 DNA MER2_type 1794 2275 -143 1794 136 66 0 chr12 37390578 37390850 -106395605 - AluSx SINE Alu -21 291 2 5277 140 0 45 chr12 37390850 37390988 -106395467 + Tigger1 DNA MER2_type 2275 2418 0 387 277 17 8 chr12 37390988 37391106 -106395349 - LTR16C LTR ERVL -14 477 359 246 232 18 0 chr12 37391474 37391530 -106394925 + MER115 DNA AcHobo 15 71 -622 903 298 111 31 chr12 37391545 37391961 -106394494 + MER115 DNA AcHobo 195 643 -50 1743 136 3 17 chr12 37392367 37392654 -106393801 - L1MA4 LINE L1 0 6300 6018 396 226 73 150 chr12 37392939 37393173 -106393282 - MIR SINE MIR 0 262 47 1923 129 0 41 chr12 37393275 37393592 -106392863 + AluSx SINE Alu 1 305 0 305 320 50 0 chr12 37393686 37393786 -106392669 - L2 LINE L2 -15 3298 3194 434 325 62 21 chr12 37394340 37394534 -106391921 - MIR SINE MIR -12 250 49 2312 57 4 0 chr12 37394545 37394824 -106391631 + L1PA3 LINE L1 5874 6153 -2 343 283 41 14 chr12 37395273 37395418 -106391037 + L1M4 LINE L1 3717 3865 -2281 610 111 0 11 chr12 37395514 37395604 -106390851 - L1PA16 LINE L1 -9 6157 6069 724 193 9 0 chr12 37395842 37395956 -106390499 + FLAM_A SINE Alu 1 115 -18 1851 144 3 0 chr12 37396376 37396718 -106389737 - AluSq SINE Alu 0 343 1 2115 114 3 0 chr12 37396720 37397010 -106389445 - AluSx SINE Alu -21 291 1 1161 128 0 6 chr12 37397013 37397192 -106389263 - AluSq SINE Alu -5 308 131 23 0 0 0 chr12 37397194 37397217 -106389238 + AT_rich Low_complexity Low_complexity 1 23 0 527 139 0 0 chr12 37397436 37397515 -106388940 + AluY SINE Alu 217 295 -16 1914 145 3 13 chr12 37397808 37398111 -106388344 + AluSx SINE Alu 1 300 -12 389 136 0 12 chr12 37398382 37398399 -106388056 + (GAAA)n Simple_repeat Simple_repeat 3 19 -63 2067 155 7 0 chr12 37398399 37398709 -106387746 + AluSx SINE Alu 1 312 0 389 136 0 12 chr12 37398709 37398772 -106387683 + (GAAA)n Simple_repeat Simple_repeat 19 82 0 1751 179 10 13 chr12 37399577 37399884 -106386571 - AluJb SINE Alu -6 306 1 2060 113 10 14 chr12 37399952 37400264 -106386191 + AluSp SINE Alu 1 311 0 1906 168 0 26 chr12 37400339 37400649 -106385806 + AluJb SINE Alu 1 302 -10 2115 128 0 0 chr12 37400649 37400945 -106385510 + AluSc SINE Alu 1 296 -13 1600 150 30 4 chr12 37400945 37401212 -106385243 - MER54A LTR ERVL -627 274 1 1613 139 143 0 chr12 37401395 37401654 -106384801 - AluSx SINE Alu -6 296 1 2115 127 3 0 chr12 37402254 37402553 -106383902 - AluSp SINE Alu -13 300 1 945 198 5 27 chr12 37402558 37402745 -106383710 - AluSg/x SINE Alu -17 293 111 20230 87 7 13 chr12 37402895 37406445 -106380010 - L1P LINE L1 -1546 4600 1072 826 241 229 4 chr12 37406548 37406814 -106379641 - MER93a LTR ERV1 -73 329 4 2459 182 43 63 chr12 37407288 37407777 -106378678 + L1MB4 LINE L1 5099 5596 -584 1453 166 0 0 chr12 37407777 37408006 -106378449 + AluSg SINE Alu 1 229 -81 2459 182 43 63 chr12 37408006 37408029 -106378426 + L1MB4 LINE L1 5596 5618 -562 312 27 0 0 chr12 37408029 37408066 -106378389 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2459 182 43 63 chr12 37408066 37408292 -106378163 + L1MB4 LINE L1 5618 5831 -349 22 35 0 0 chr12 37408366 37408395 -106378060 + AT_rich Low_complexity Low_complexity 1 29 0 8087 112 5 18 chr12 37409387 37410675 -106375780 + L1PA8 LINE L1 4047 5343 -829 2092 108 7 17 chr12 37410675 37410972 -106375483 + AluSq SINE Alu 1 294 -19 8087 112 5 18 chr12 37410972 37411792 -106374663 + L1PA8 LINE L1 5343 6172 0 2002 150 11 11 chr12 37412789 37413136 -106373319 + MER7A DNA MER2_type 1 345 -1 235 331 7 47 chr12 37413508 37413656 -106372799 + L2 LINE L2 3117 3258 -55 1383 219 0 34 chr12 37414215 37414512 -106371943 + AluJo SINE Alu 3 289 -23 27 29 0 0 chr12 37414787 37414821 -106371634 + AT_rich Low_complexity Low_complexity 1 34 0 21 82 0 0 chr12 37415025 37415074 -106371381 + AT_rich Low_complexity Low_complexity 1 49 0 1366 197 51 67 chr12 37417983 37418267 -106368188 - MLT1A1 LTR MaLR 0 365 86 2140 118 0 0 chr12 37418267 37418597 -106367858 - AluSg SINE Alu 0 330 1 1366 197 51 67 chr12 37418597 37418682 -106367773 - MLT1A1 LTR MaLR -279 86 1 1229 204 0 17 chr12 37419734 37419974 -106366481 + AluJo SINE Alu 1 236 -76 3503 199 111 81 chr12 37419983 37421121 -106365334 + MER52A LTR ERV1 25 1196 -559 300 250 28 0 chr12 37421111 37421183 -106365272 + MER52A LTR ERV1 1682 1755 0 * 408 121 0 30 chr12 37421183 37421249 -106365206 + AluJo SINE Alu 235 298 -14 1178 245 49 12 chr12 37421812 37422138 -106364317 - MLT1A1 LTR MaLR -2 363 26 1080 334 66 19 chr12 37423674 37424281 -106362174 + L2 LINE L2 2574 3223 -90 1636 216 22 0 chr12 37424289 37424655 -106361800 - L1MB1 LINE L1 -13 5979 5606 403 117 10 39 chr12 37424655 37424758 -106361697 + (TA)n Simple_repeat Simple_repeat 1 100 0 9023 206 51 27 chr12 37424758 37425748 -106360707 - L1MB1 LINE L1 -375 5617 4652 1877 128 0 4 chr12 37425748 37426022 -106360433 - AluSx SINE Alu -7 305 33 9023 206 51 27 chr12 37426022 37428045 -106358410 - L1MB1 LINE L1 -1340 4652 2531 645 316 12 8 chr12 37428060 37428304 -106358151 - L1MB1 LINE L1 -4991 910 666 422 352 37 68 chr12 37428474 37428859 -106357596 - L1MB1 LINE L1 -5278 613 203 546 324 55 42 chr12 37428959 37429271 -106357184 - L1MB1 LINE L1 -5571 320 5 35 41 0 0 chr12 37429356 37429405 -106357050 + AT_rich Low_complexity Low_complexity 1 49 0 535 222 61 51 chr12 37429436 37429701 -106356754 + L1MC5 LINE L1 6991 7250 -733 1908 147 0 10 chr12 37430225 37430524 -106355931 - AluSx SINE Alu -16 296 1 2148 85 3 33 chr12 37430785 37431092 -106355363 + AluY SINE Alu 1 298 -13 1850 132 51 43 chr12 37432270 37432642 -106353813 - THE1C LTR MaLR 0 375 1 242 239 61 117 chr12 37433780 37433943 -106352512 + MER20B DNA MER1_type 20 173 -610 1915 142 0 30 chr12 37434095 37434430 -106352025 - AluSx SINE Alu 0 326 1 832 314 144 15 chr12 37435157 37436278 -106350177 + HAL1 LINE L1 133 1108 -1399 372 22 0 0 chr12 37436278 37436323 -106350132 + (CA)n Simple_repeat Simple_repeat 2 46 0 832 314 144 15 chr12 37436323 37436931 -106349524 + HAL1 LINE L1 1108 2143 -364 1261 199 0 13 chr12 37436936 37437162 -106349293 - MER41D LTR ERV1 0 557 335 21 57 0 0 chr12 37437780 37437815 -106348640 + AT_rich Low_complexity Low_complexity 1 35 0 2908 161 91 24 chr12 37438456 37439220 -106347235 - MER21A LTR ERV1 0 931 1 536 28 0 0 chr12 37440470 37440542 -106345913 - L1PA3 LINE L1 -98 6057 5986 725 12 0 0 chr12 37440544 37440649 -106345806 + L1PA3 LINE L1 6063 6167 0 225 278 37 0 chr12 37440772 37440826 -106345629 - L2 LINE L2 0 3313 3258 192 97 0 0 chr12 37441306 37441337 -106345118 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1267 211 45 23 chr12 37442701 37443009 -106343446 + MLT1A2 LTR MaLR 60 374 0 409 321 108 11 chr12 37443169 37443446 -106343009 + L1ME4a LINE L1 5644 5947 -174 421 185 12 0 chr12 37443612 37443693 -106342762 - MER94 DNA DNA -49 85 4 378 0 0 0 chr12 37444063 37444105 -106342350 + (TA)n Simple_repeat Simple_repeat 2 43 0 25 31 0 0 chr12 37444122 37444154 -106342301 + AT_rich Low_complexity Low_complexity 1 32 0 1862 61 16 4 chr12 37444799 37445044 -106341411 - AluY SINE Alu 0 311 64 291 290 95 95 chr12 37446802 37447023 -106339432 + MIR SINE MIR 30 250 -12 278 190 103 52 chr12 37447095 37447211 -106339244 - HAL1b LINE L1 -2 1346 1225 255 125 182 45 chr12 37447183 37447271 -106339184 + L1ME4a LINE L1 5981 6080 -41 * 306 224 65 37 chr12 37447366 37447473 -106338982 - HAL1b LINE L1 -145 1203 1094 22 0 0 0 chr12 37447506 37447528 -106338927 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr12 37447545 37447577 -106338878 + AT_rich Low_complexity Low_complexity 1 32 0 1258 224 123 35 chr12 37447799 37447903 -106338552 + MLT1D LTR MaLR 1 94 -411 2120 114 0 16 chr12 37447903 37448220 -106338235 + AluSx SINE Alu 1 312 0 1258 224 123 35 chr12 37448220 37448579 -106337876 + MLT1D LTR MaLR 94 505 0 394 212 0 12 chr12 37448601 37448686 -106337769 - L1ME3A LINE L1 -293 5877 5794 230 259 0 0 chr12 37448716 37448770 -106337685 - L1ME3A LINE L1 -453 5717 5664 564 297 6 0 chr12 37448775 37448940 -106337515 - L1ME3A LINE L1 -604 5566 5401 292 294 0 0 chr12 37448951 37449019 -106337436 + MER96B DNA MER1_type? 1 68 -107 312 266 75 45 chr12 37449077 37449276 -106337179 - L1ME3A LINE L1 -1810 4336 4132 220 259 0 0 chr12 37449369 37449423 -106337032 + CT-rich Low_complexity Low_complexity 1 54 0 213 94 0 0 chr12 37449424 37449456 -106336999 + (TG)n Simple_repeat Simple_repeat 2 33 0 343 204 45 34 chr12 37449475 37449563 -106336892 + Tigger5 DNA MER2_type 1 89 -2234 * 1474 147 4 0 chr12 37449559 37449797 -106336658 + Tigger5 DNA MER2_type 2085 2323 0 1561 153 65 57 chr12 37449881 37450076 -106336379 - THE1C LTR MaLR 0 375 174 1854 149 14 7 chr12 37450076 37450364 -106336091 - AluSx SINE Alu -16 296 7 1561 153 65 57 chr12 37450364 37450540 -106335915 - THE1C LTR MaLR -201 174 1 22 35 0 0 chr12 37451992 37452021 -106334434 + AT_rich Low_complexity Low_complexity 1 29 0 1111 200 20 43 chr12 37452281 37452536 -106333919 - MER96B DNA MER1_type? -168 249 1 383 340 160 0 chr12 37452781 37452975 -106333480 + MIR SINE MIR 25 249 -13 1250 166 125 35 chr12 37454541 37454885 -106331570 + THE1C LTR MaLR 1 375 0 1841 254 40 49 chr12 37455016 37455647 -106330808 - MLT1E2 LTR MaLR -1 625 1 746 236 96 23 chr12 37455887 37456262 -106330193 - L1ME2 LINE L1 -1 6163 5710 11806 45 6 4 chr12 37456380 37458578 -106327877 - L1PA5 LINE L1 -20 6134 3928 462 313 29 19 chr12 37459305 37459621 -106326834 - L1MEc LINE L1 -4612 1784 1466 437 328 89 53 chr12 37459662 37460607 -106325848 - L1MEc LINE L1 -5382 1014 36 225 0 0 0 chr12 37460731 37460756 -106325699 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 299 337 53 37 chr12 37461128 37461318 -106325137 - MIR SINE MIR -67 195 3 515 335 100 25 chr12 37461407 37461807 -106324648 - L3 LINE CR1 -1 1576 1147 22 35 0 0 chr12 37463652 37463681 -106322774 + AT_rich Low_complexity Low_complexity 1 29 0 614 301 39 27 chr12 37464267 37464695 -106321760 + LTR33 LTR ERVL 1 464 -57 818 134 7 35 chr12 37464721 37464863 -106321592 - FLAM_C SINE Alu 0 143 6 470 334 43 11 chr12 37464925 37465521 -106320934 + ERVL LTR ERVL 2882 3593 -2171 1819 327 25 12 chr12 37465555 37466304 -106320151 + ERVL LTR ERVL 3995 4763 -891 436 322 101 35 chr12 37467077 37467475 -106318980 + LTR33 LTR ERVL 31 454 -67 365 268 85 64 chr12 37467541 37467776 -106318679 + L1M4 LINE L1 2215 2454 -3692 305 382 0 0 chr12 37467941 37468072 -106318383 + L1M4 LINE L1 2691 2821 -3325 21 36 0 0 chr12 37468112 37468140 -106318315 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 37468205 37468227 -106318228 + AT_rich Low_complexity Low_complexity 1 22 0 1474 299 90 18 chr12 37469192 37470073 -106316382 - L1ME3A LINE L1 -4 6166 5225 853 296 94 16 chr12 37470333 37471081 -106315374 - L1ME3A LINE L1 -1329 4817 4012 386 212 64 91 chr12 37471269 37471438 -106315017 - L1MC4 LINE L1 -27 8015 7854 2054 137 76 17 chr12 37471438 37471782 -106314673 + THE1B LTR MaLR 1 364 0 386 212 64 91 chr12 37471782 37471876 -106314579 - L1MC4 LINE L1 -188 7854 7759 300 298 48 52 chr12 37471871 37472392 -106314063 - L1ME3A LINE L1 -2299 3847 3329 * 231 254 0 0 chr12 37472401 37472460 -106313995 - L1ME1 LINE L1 -7 6159 6101 2476 241 83 19 chr12 37472460 37473254 -106313201 - L1ME1 LINE L1 -6 6160 5316 25 31 0 0 chr12 37473254 37473286 -106313169 + AT_rich Low_complexity Low_complexity 1 32 0 215 268 87 47 chr12 37474585 37474712 -106311743 - MIR SINE MIR -54 208 77 704 335 122 17 chr12 37474875 37475371 -106311084 + L2 LINE L2 2544 3107 -206 422 293 64 0 chr12 37475763 37475903 -106310552 + LTR16C LTR ERVL 234 382 -109 336 317 101 25 chr12 37476150 37476349 -106310106 + LTR33 LTR ERVL 307 520 -1 234 0 0 0 chr12 37476721 37476747 -106309708 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1120 238 22 12 chr12 37476753 37477069 -106309386 - L1ME2 LINE L1 -45 6117 5802 1061 102 0 19 chr12 37477069 37477226 -106309229 - MER4E LTR ERV1 0 766 613 2677 140 14 2 chr12 37477226 37477655 -106308800 + MER57B LTR ERV1 1 434 0 2937 168 11 58 chr12 37477655 37477962 -106308493 + MER57B-int LTR ERV1 1 270 -7267 2014 145 0 0 chr12 37477962 37478259 -106308196 - AluSx SINE Alu -12 300 4 2937 168 11 58 chr12 37478259 37478517 -106307938 + MER57B-int LTR ERV1 270 539 -6998 30 27 0 0 chr12 37478517 37478554 -106307901 + AT_rich Low_complexity Low_complexity 1 37 0 2039 126 0 0 chr12 37478554 37478839 -106307616 - AluY SINE Alu -26 285 1 2064 141 0 0 chr12 37479435 37479733 -106306722 + AluSq SINE Alu 1 298 -15 2060 111 4 0 chr12 37479749 37480051 -106306404 + AluSp SINE Alu 4 306 0 183 80 0 0 chr12 37480071 37480096 -106306359 + (TG)n Simple_repeat Simple_repeat 2 26 0 232 133 0 80 chr12 37480098 37480173 -106306282 + LTR66 LTR ERVL 394 462 -148 1086 184 5 0 chr12 37480184 37480380 -106306075 - L1M2 LINE L1 -549 5742 5546 1376 87 5 11 chr12 37480394 37480578 -106305877 - AluY SINE Alu -16 295 113 1110 168 0 6 chr12 37480744 37480923 -106305532 - AluSg/x SINE Alu -13 299 122 2121 127 7 3 chr12 37481036 37481344 -106305111 + AluSq SINE Alu 1 309 -4 401 315 108 30 chr12 37481475 37481833 -106304622 + L1ME3A LINE L1 5421 5750 -420 1848 161 3 0 chr12 37481833 37482137 -106304318 - AluSx SINE Alu -7 305 1 2019 125 3 35 chr12 37482137 37482305 -106304150 - AluSx SINE Alu -11 301 146 1983 122 24 0 chr12 37482305 37482592 -106303863 - AluY SINE Alu -9 302 9 2019 125 3 35 chr12 37482592 37482734 -106303721 - AluSx SINE Alu -166 146 1 401 315 108 30 chr12 37482734 37482866 -106303589 + L1ME3A LINE L1 5749 5950 -220 1663 115 4 28 chr12 37482910 37483162 -106303293 + AluSg/x SINE Alu 65 310 -2 316 109 0 22 chr12 37483517 37483563 -106302892 + Alu SINE Alu 2 46 -257 742 257 74 19 chr12 37483582 37483905 -106302550 + L1MA9 LINE L1 5934 6274 -38 1714 155 35 18 chr12 37483931 37484215 -106302240 + AluSg SINE Alu 1 289 -21 315 0 0 0 chr12 37484234 37484269 -106302186 + (GA)n Simple_repeat Simple_repeat 2 36 0 277 342 71 19 chr12 37484907 37485062 -106301393 + MIR SINE MIR 12 174 -88 4709 178 30 12 chr12 37485582 37486546 -106299909 + L1MC2 LINE L1 5361 6341 -3 1995 149 0 0 chr12 37486560 37486849 -106299606 - AluY SINE Alu -20 291 3 930 204 0 0 chr12 37486854 37487011 -106299444 - AluJb SINE Alu -19 293 137 978 206 9 6 chr12 37487054 37489769 -106296686 - ALR/Alpha Satellite centromeric 0 3412 708 221 0 35 0 chr12 37489769 37489798 -106296657 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1982 95 61 0 chr12 37489798 37490061 -106296394 - AluY SINE Alu -32 279 1 978 206 9 6 chr12 37490061 37490455 -106296000 - ALR/Alpha Satellite centromeric -2703 709 1 918 196 11 6 chr12 37490468 37492602 -106293853 - ALR/Alpha Satellite centromeric -4 2143 1 207 0 0 0 chr12 37492608 37492631 -106293824 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 952 200 7 12 chr12 37492632 37497069 -106289386 - ALR/Alpha Satellite centromeric 0 4415 1 546 284 78 55 chr12 37497236 37497708 -106288747 + SST1 Satellite centromeric 190 672 -891 328 284 65 19 chr12 37497948 37498103 -106288352 + SST1 Satellite centromeric 1391 1552 -11 219 88 0 0 chr12 37498149 37498183 -106288272 + (TG)n Simple_repeat Simple_repeat 1 34 0 604 314 60 52 chr12 37499186 37499814 -106286641 + SST1 Satellite centromeric 40 672 -891 408 303 59 64 chr12 37500221 37500630 -106285825 + SST1 Satellite centromeric 1130 1536 -27 353 165 10 0 chr12 37500635 37500732 -106285723 + (TG)n Simple_repeat Simple_repeat 1 98 0 1024 196 8 6 chr12 37501376 37505251 -106281204 - ALR/Alpha Satellite centromeric -8 3880 1 2483 276 54 45 chr12 37505542 37505798 -106280657 + SST1 Satellite centromeric 1 253 -1345 279 93 0 0 chr12 37505798 37505841 -106280614 + (CTGGGG)n Simple_repeat Simple_repeat 3 45 0 2483 276 54 45 chr12 37505841 37507125 -106279330 + SST1 Satellite centromeric 253 1597 -1 225 0 0 0 chr12 37507129 37507154 -106279301 + (TG)n Simple_repeat Simple_repeat 2 26 0 249 210 16 0 chr12 37507154 37507216 -106279239 + CT-rich Low_complexity Low_complexity 1 63 0 577 257 58 18 chr12 37507945 37508171 -106278284 + SST1 Satellite centromeric 1 235 -1328 2134 265 60 52 chr12 37508183 37509315 -106277140 + SST1 Satellite centromeric 416 1556 -7 249 33 0 0 chr12 37509330 37509360 -106277095 + (TG)n Simple_repeat Simple_repeat 2 31 0 245 196 18 0 chr12 37509360 37509416 -106277039 + CT-rich Low_complexity Low_complexity 1 57 0 262 78 20 20 chr12 37509420 37509471 -106276984 + (TG)n Simple_repeat Simple_repeat 2 52 0 536 272 75 24 chr12 37510176 37510389 -106276066 + SST1 Satellite centromeric 9 232 -1331 1470 289 58 50 chr12 37510400 37511220 -106275235 + SST1 Satellite centromeric 413 1239 -324 7524 157 29 19 chr12 37511784 37513177 -106273278 + SST1 Satellite centromeric 1 1406 -157 813 154 0 13 chr12 37513250 37513399 -106273056 - AluSg/x SINE Alu -9 303 157 1261 191 127 11 chr12 37513405 37513688 -106272767 + SST1 Satellite centromeric 1238 1553 -10 803 164 7 0 chr12 37514755 37514895 -106271560 + AluYb8 SINE Alu 1 141 -177 2071 122 10 3 chr12 37514898 37515209 -106271246 + AluSq SINE Alu 1 313 0 1899 149 0 0 chr12 37515337 37515625 -106270830 + AluSx SINE Alu 11 298 -14 428 204 0 39 chr12 37515966 37516069 -106270386 + MER33 DNA MER1_type 37 135 -189 869 143 13 26 chr12 37516069 37516203 -106270252 + AluJo SINE Alu 1 134 -178 1801 142 0 52 chr12 37516203 37516512 -106269943 + AluJb SINE Alu 1 293 -19 869 143 13 26 chr12 37516512 37516531 -106269924 + AluJo SINE Alu 134 152 -160 1247 164 9 0 chr12 37516532 37516751 -106269704 + AluSg/x SINE Alu 79 299 -13 369 0 0 0 chr12 37516752 37516793 -106269662 + (CA)n Simple_repeat Simple_repeat 2 42 0 1435 186 59 10 chr12 37516881 37517188 -106269267 + L1MB8 LINE L1 5848 6169 -9 550 128 21 0 chr12 37517272 37517366 -106269089 - AluSx SINE Alu 0 312 217 822 162 7 7 chr12 37517366 37517508 -106268947 - AluSx SINE Alu -170 142 1 1138 208 4 38 chr12 37517635 37517899 -106268556 + AluJb SINE Alu 1 255 -57 582 144 0 29 chr12 37519847 37519981 -106266474 + AluSg/x SINE Alu 206 312 0 1715 132 32 7 chr12 37520086 37520367 -106266088 + AluSx SINE Alu 5 292 -20 657 170 38 0 chr12 37520396 37520502 -106265953 - AluSq/x SINE Alu -201 111 2 258 187 98 49 chr12 37520631 37520754 -106265701 - HAL1b LINE L1 -5 1343 1215 1624 179 10 17 chr12 37520810 37521086 -106265369 + AluSx SINE Alu 4 112 -200 198 0 0 0 chr12 37521086 37521108 -106265347 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1624 179 10 17 chr12 37521108 37521308 -106265147 + AluSx SINE Alu 112 312 0 1384 194 61 4 chr12 37521308 37521586 -106264869 + MER44D DNA MER2_type 439 604 -1 239 244 39 0 chr12 37521866 37521944 -106264511 + (TA)n Simple_repeat Simple_repeat 2 82 0 1752 165 3 0 chr12 37521958 37522255 -106264200 - AluSx SINE Alu -14 298 1 1625 179 3 0 chr12 37522292 37522577 -106263878 + AluJb SINE Alu 5 290 -22 236 289 24 0 chr12 37522618 37522701 -106263754 - L1ME LINE L1 -545 5576 5492 2657 196 101 4 chr12 37522703 37523229 -106263226 + MER77 LTR ERV1 1 577 -28 2265 87 0 7 chr12 37523476 37523785 -106262670 - AluY SINE Alu -4 307 1 2070 123 0 0 chr12 37523933 37524233 -106262222 - AluSg SINE Alu -1 309 10 2399 141 21 14 chr12 37524313 37524731 -106261724 - L1PA15 LINE L1 0 6165 5745 2056 231 12 19 chr12 37524741 37525177 -106261278 + L1P LINE L1 4730 5163 -983 1737 119 19 0 chr12 37525177 37525438 -106261017 + AluSg SINE Alu 42 307 -3 2056 231 12 19 chr12 37525438 37525564 -106260891 + L1P LINE L1 5163 5288 -858 267 224 0 40 chr12 37525568 37525644 -106260811 + MER89 LTR ERV1 487 559 0 1740 155 7 7 chr12 37525699 37525983 -106260472 + AluSg SINE Alu 3 286 -24 1988 130 0 3 chr12 37525991 37526290 -106260165 + AluSg SINE Alu 1 298 -12 1196 106 5 88 chr12 37526292 37526535 -106259920 + AluSp SINE Alu 98 313 0 1679 142 64 0 chr12 37526873 37527154 -106259301 + AluSq SINE Alu 1 299 -14 1042 201 20 111 chr12 37527154 37527372 -106259083 - L1MC4a LINE L1 -916 6892 6752 712 157 0 57 chr12 37527372 37527512 -106258943 + FLAM_C SINE Alu 1 132 -1 1042 201 20 111 chr12 37527512 37527654 -106258801 - L1MC4a LINE L1 -1056 6752 6599 1889 157 0 0 chr12 37527671 37527970 -106258485 - AluSx SINE Alu -13 299 1 1722 185 145 46 chr12 37527970 37528072 -106258383 + MER106B DNA MER1_type 2 92 -967 2052 130 0 0 chr12 37528072 37528372 -106258083 - AluSx SINE Alu -12 300 1 1722 185 145 46 chr12 37528372 37528469 -106257986 + MER106B DNA MER1_type 92 178 -881 1768 158 7 7 chr12 37528469 37528773 -106257682 + AluSx SINE Alu 1 304 -8 1722 185 145 46 chr12 37528773 37529054 -106257401 + MER106B DNA MER1_type 178 531 -528 1754 151 3 3 chr12 37529054 37529376 -106257079 - AluSx SINE Alu 0 322 1 1834 154 3 0 chr12 37529601 37529906 -106256549 + AluSx SINE Alu 2 307 -5 2168 113 3 0 chr12 37529959 37530269 -106256186 + AluSx SINE Alu 1 311 -1 287 105 0 0 chr12 37530652 37530690 -106255765 + Alu SINE Alu 1 38 -263 468 290 132 48 chr12 37530742 37531097 -106255358 + L2 LINE L2 2847 3231 -82 1260 87 17 0 chr12 37531099 37531271 -106255184 - AluSg/x SINE Alu -22 288 114 454 150 23 120 chr12 37531911 37532044 -106254411 + MER61E LTR ERV1 33 152 -417 * 672 168 48 8 chr12 37532028 37532141 -106254314 + LTR25 LTR ERV1 239 356 -438 845 155 216 28 chr12 37532141 37532465 -106253990 - LTR46 LTR ERV1 0 460 1 1832 162 20 45 chr12 37532465 37532861 -106253594 + LTR25 LTR ERV1 362 747 -47 3808 181 78 32 chr12 37533162 37533252 -106253203 + MER21B LTR ERV1 1 85 -778 2175 89 16 32 chr12 37533252 37533567 -106252888 - AluSx SINE Alu 0 312 3 3808 181 78 32 chr12 37533567 37534300 -106252155 + MER21B LTR ERV1 85 862 -1 1181 212 26 29 chr12 37534356 37534663 -106251792 - AluJo SINE Alu -1 311 6 1743 143 7 7 chr12 37534679 37534980 -106251475 - AluSx SINE Alu 0 334 34 248 211 0 0 chr12 37534980 37535032 -106251423 - AluJb SINE Alu -57 245 194 516 198 0 0 chr12 37535217 37535313 -106251142 - AluSx SINE Alu 0 312 217 836 169 0 0 chr12 37535313 37535455 -106251000 - AluSx SINE Alu -171 142 1 1507 185 7 7 chr12 37535580 37535872 -106250583 + AluJb SINE Alu 1 292 -20 324 0 0 0 chr12 37536211 37536247 -106250208 + (CA)n Simple_repeat Simple_repeat 1 36 0 189 0 0 0 chr12 37536727 37536748 -106249707 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 378 0 0 0 chr12 37537832 37537874 -106248581 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1758 144 7 0 chr12 37537875 37538153 -106248302 - AluSx SINE Alu -32 280 1 1631 179 11 0 chr12 37538243 37538522 -106247933 - AluSx SINE Alu -28 284 3 290 271 66 8 chr12 37538657 37538779 -106247676 - HAL1b LINE L1 -5 1343 1215 1663 173 3 22 chr12 37538832 37539150 -106247305 + AluSx SINE Alu 1 312 0 429 66 66 0 chr12 37539157 37539233 -106247222 + GA-rich Low_complexity Low_complexity 1 81 0 1633 184 13 22 chr12 37539234 37539549 -106246906 + MER44D DNA MER2_type 421 604 -1 1854 144 7 0 chr12 37539916 37540214 -106246241 - AluSx SINE Alu -12 300 1 1492 207 7 0 chr12 37540247 37540546 -106245909 + AluJb SINE Alu 1 301 -11 2427 211 113 4 chr12 37540658 37541178 -106245277 + MER77 LTR ERV1 1 577 -28 1822 149 0 0 chr12 37541555 37541837 -106244618 - AluSg SINE Alu 0 310 29 769 147 0 37 chr12 37541887 37542061 -106244394 + AluSp/q SINE Alu 172 313 0 1949 104 3 45 chr12 37542200 37542508 -106243947 - AluSx SINE Alu -17 295 1 1028 115 0 0 chr12 37542508 37542647 -106243808 - AluSq/x SINE Alu -172 141 3 532 236 42 21 chr12 37542668 37542812 -106243643 + L2 LINE L2 3167 3313 0 882 212 14 37 chr12 37542869 37543086 -106243369 - AluSx SINE Alu -100 212 1 23 0 0 0 chr12 37543340 37543363 -106243092 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr12 37543542 37543582 -106242873 + AT_rich Low_complexity Low_complexity 1 40 0 1219 222 60 4 chr12 37543582 37543887 -106242568 - L1MC/D LINE L1 -718 5626 5370 936 172 0 0 chr12 37543892 37544049 -106242406 + FRAM SINE Alu 1 157 -19 1934 128 0 0 chr12 37544052 37544372 -106242083 + AluY SINE Alu 1 320 0 3249 181 57 10 chr12 37544379 37545052 -106241403 - L1MC2 LINE L1 -25 6319 5616 235 180 197 0 chr12 37545313 37545374 -106241081 - AluSq SINE Alu -8 295 223 1242 137 6 0 chr12 37545375 37545557 -106240898 - AluSq SINE Alu -130 183 1 1433 133 4 29 chr12 37545916 37546156 -106240299 - AluSg/x SINE Alu -14 298 65 264 226 54 21 chr12 37546203 37546296 -106240159 - L1ME3A LINE L1 -223 5947 5852 1672 155 16 39 chr12 37546336 37546477 -106239978 + AluSx SINE Alu 1 144 -168 1708 161 7 0 chr12 37546477 37546763 -106239692 + AluY SINE Alu 8 295 -16 1672 155 16 39 chr12 37546763 37546930 -106239525 + AluSx SINE Alu 144 302 -10 1752 157 0 0 chr12 37546934 37547220 -106239235 + AluSx SINE Alu 3 288 -24 59 0 0 0 chr12 37547220 37547279 -106239176 + AT_rich Low_complexity Low_complexity 1 59 0 462 319 63 12 chr12 37547297 37547629 -106238826 - L1ME3A LINE L1 -401 5769 5421 2006 119 7 3 chr12 37547775 37548068 -106238387 - AluSq SINE Alu -15 298 5 1602 159 10 10 chr12 37548911 37549200 -106237255 - AluJb SINE Alu -23 289 1 589 152 0 11 chr12 37549313 37549405 -106237050 + AluSp SINE Alu 122 212 -101 1588 198 23 8 chr12 37549910 37550250 -106236205 + MER93a LTR ERV1 4 394 -8 754 187 0 43 chr12 37550252 37550391 -106236064 - FLAM_A SINE Alu 0 133 1 612 89 0 11 chr12 37550629 37550719 -106235736 + L1PA16 LINE L1 6069 6157 -9 317 280 24 8 chr12 37550815 37550940 -106235515 - L1M4 LINE L1 -2281 3865 3739 24 32 0 0 chr12 37550961 37550992 -106235463 + AT_rich Low_complexity Low_complexity 1 31 0 457 335 56 19 chr12 37551375 37551590 -106234865 + MIR SINE MIR 28 250 -12 345 297 50 0 chr12 37552139 37552240 -106234215 + L2 LINE L2 3193 3298 -15 1805 157 0 7 chr12 37552336 37552629 -106233826 - AluSx SINE Alu -15 297 7 414 230 132 113 chr12 37552735 37552939 -106233516 + MIR SINE MIR 44 251 -11 1648 125 14 7 chr12 37553262 37553543 -106232912 + L1MA4 LINE L1 6018 6300 0 1120 269 90 34 chr12 37553725 37554284 -106232171 - MER115 DNA AcHobo -50 643 15 419 281 15 15 chr12 37554631 37554766 -106231689 + LTR16C LTR ERVL 340 474 -17 2878 160 0 54 chr12 37554769 37554907 -106231548 - Tigger1 DNA MER2_type 0 2418 2274 1858 121 39 0 chr12 37554907 37555187 -106231268 + AluSx SINE Alu 2 292 -20 2878 160 0 54 chr12 37555187 37555586 -106230869 - Tigger1 DNA MER2_type -144 2274 1910 846 255 25 10 chr12 37555780 37555976 -106230479 - MER115 DNA AcHobo -50 643 445 1944 134 7 0 chr12 37556033 37556339 -106230116 + AluSp SINE Alu 1 308 -5 2364 139 0 0 chr12 37556339 37556691 -106229764 - Tigger1 DNA MER2_type -645 1773 1422 308 250 107 0 chr12 37559571 37559655 -106226800 + L1ME LINE L1 5737 5829 -333 216 260 62 52 chr12 37559954 37560050 -106226405 - MIR SINE MIR -58 150 70 285 286 174 0 chr12 37560246 37560344 -106226111 + L2 LINE L2 3122 3236 -36 372 283 145 0 chr12 37560355 37560500 -106225955 - L2 LINE L2 -9 3304 3139 629 304 39 8 chr12 37560584 37560844 -106225611 - L2 LINE L2 -1742 1572 1305 395 268 16 16 chr12 37560883 37561006 -106225449 + MIR SINE MIR 93 215 -47 1024 310 141 2 chr12 37561022 37561647 -106224808 - L2 LINE L2 -1993 1321 610 2140 188 25 109 chr12 37561709 37562321 -106224134 - MER7C DNA MER2_type -42 560 1 381 278 164 27 chr12 37562324 37562587 -106223868 - L2 LINE L2 -2793 521 223 538 115 0 0 chr12 37563019 37563097 -106223358 - AluSc SINE Alu -11 298 221 459 289 26 13 chr12 37563555 37563707 -106222748 - L2 LINE L2 -27 3286 3133 769 193 7 0 chr12 37563707 37563842 -106222613 + FLAM_C SINE Alu 5 140 -3 268 294 124 79 chr12 37564011 37564188 -106222267 + MER5A DNA MER1_type 3 187 -2 340 273 27 18 chr12 37564264 37564374 -106222081 + L2 LINE L2 2927 3037 -235 291 246 31 19 chr12 37564740 37564859 -106221596 + MIR SINE MIR 33 152 -65 25 31 0 0 chr12 37565956 37565988 -106220467 + AT_rich Low_complexity Low_complexity 1 32 0 221 197 33 0 chr12 37666138 37666199 -106120256 + GA-rich Low_complexity Low_complexity 1 63 0 282 87 0 0 chr12 37666199 37666245 -106120210 + (CA)n Simple_repeat Simple_repeat 2 47 0 1667 233 73 60 chr12 37666252 37667137 -106119318 - SST1 Satellite centromeric -1 1562 666 2815 185 142 55 chr12 37667580 37668789 -106117666 + MER52C LTR ERV1 1 1278 0 454 119 0 30 chr12 37668789 37668856 -106117599 + Alu SINE Alu 235 299 -13 22 35 0 0 chr12 37669999 37670028 -106116427 + AT_rich Low_complexity Low_complexity 1 29 0 2295 179 27 74 chr12 37670102 37670326 -106116129 - L1MB3 LINE L1 -351 5832 5599 387 0 0 0 chr12 37670326 37670369 -106116086 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2295 179 27 74 chr12 37670369 37670388 -106116067 - L1MB3 LINE L1 -584 5599 5581 1644 142 0 0 chr12 37670388 37670621 -106115834 - AluSg SINE Alu -77 233 1 2295 179 27 74 chr12 37670621 37670900 -106115555 - L1MB3 LINE L1 -602 5581 5334 568 301 55 12 chr12 37671773 37672029 -106114426 + SST1 Satellite centromeric 1 267 -1296 1149 128 4 0 chr12 37672039 37672464 -106113991 - ALR/Alpha Satellite centromeric 0 426 1 1961 143 0 3 chr12 37672647 37672934 -106113521 + AluSq SINE Alu 3 288 -25 2182 126 0 0 chr12 37673182 37673484 -106112971 + AluSq SINE Alu 1 302 -11 1435 188 7 41 chr12 37674449 37674741 -106111714 + AluJo SINE Alu 1 282 -30 945 237 4 13 chr12 37674889 37675121 -106111334 + L1MB1 LINE L1 5936 6165 -3 1039 309 74 28 chr12 37675121 37675728 -106110727 - L2 LINE L2 -94 3219 2574 1070 251 29 14 chr12 37677258 37677537 -106108918 + MLT1A1 LTR MaLR 26 308 -57 367 294 17 8 chr12 37677722 37677840 -106108615 + LTR16C LTR ERVL 359 477 -14 5222 153 1 34 chr12 37677840 37677978 -106108477 - Tigger1 DNA MER2_type 0 2418 2277 1828 129 65 0 chr12 37677978 37678257 -106108198 + AluSx SINE Alu 2 298 -14 5222 153 1 34 chr12 37678257 37678791 -106107664 - Tigger1 DNA MER2_type -141 2277 1781 2119 130 3 0 chr12 37678791 37679090 -106107365 + AluSp SINE Alu 1 300 -13 5222 153 1 34 chr12 37679090 37679320 -106107135 - Tigger1 DNA MER2_type -637 1781 1545 584 134 244 25 chr12 37679308 37679427 -106107028 - Tigger1 DNA MER2_type -1210 1208 1064 * 1560 187 3 36 chr12 37679427 37679732 -106106723 - AluJb SINE Alu -17 295 1 7387 121 2 10 chr12 37680289 37681356 -106105099 - THE1A-int LTR MaLR -522 1058 1 2523 111 3 43 chr12 37681356 37681726 -106104729 - THE1A LTR MaLR 0 355 1 598 248 74 55 chr12 37681726 37682071 -106104384 + L1M2 LINE L1 5492 5845 -374 1119 188 65 115 chr12 37682418 37682802 -106103653 + MLT1A1 LTR MaLR 1 365 0 1122 214 4 24 chr12 37684056 37684304 -106102151 + AluJo SINE Alu 16 258 -54 900 273 95 47 chr12 37684305 37684989 -106101466 + SST1 Satellite centromeric 847 1563 0 242 138 17 0 chr12 37685009 37685067 -106101388 + CT-rich Low_complexity Low_complexity 2 60 0 207 167 0 0 chr12 37685066 37685108 -106101347 + (TG)n Simple_repeat Simple_repeat 1 42 0 * 428 259 62 12 chr12 37685622 37685784 -106100671 + SST1 Satellite centromeric 256 425 -1138 1820 157 0 0 chr12 37685905 37686186 -106100269 - AluY SINE Alu -30 281 1 991 178 0 0 chr12 37686189 37686346 -106100109 - FRAM SINE Alu -19 157 1 1280 209 27 7 chr12 37686351 37686650 -106099805 + L1MC/D LINE L1 5370 5629 -715 39 38 0 0 chr12 37686650 37686703 -106099752 + AT_rich Low_complexity Low_complexity 1 53 0 895 220 9 37 chr12 37687171 37687389 -106099066 + AluSx SINE Alu 1 212 -100 242 182 0 0 chr12 37687398 37687442 -106099013 + Charlie1 DNA MER1_type 2718 2761 0 576 195 24 24 chr12 37687450 37687573 -106098882 - L2 LINE L2 -4 3309 3187 1222 136 0 31 chr12 37687611 37687802 -106098653 + AluSx SINE Alu 3 187 -125 530 82 14 0 chr12 37687810 37687883 -106098572 + AluSq/x SINE Alu 60 133 -180 1280 136 3 1 chr12 37688002 37691951 -106094504 - ALR/Alpha Satellite centromeric 0 3957 1 271 398 0 0 chr12 37691951 37692054 -106094401 - MIR SINE MIR -132 130 28 21 71 0 0 chr12 37692426 37692468 -106093987 + AT_rich Low_complexity Low_complexity 1 42 0 640 89 0 11 chr12 37692712 37692802 -106093653 - L1PA16 LINE L1 -9 6157 6069 1035 231 52 4 chr12 37693221 37693328 -106093127 - AluJo SINE Alu -72 240 140 243 0 0 0 chr12 37693328 37693355 -106093100 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1035 231 52 4 chr12 37693355 37693476 -106092979 - AluJo SINE Alu -172 140 1 1386 187 49 113 chr12 37694523 37694608 -106091847 + MLT1A1 LTR MaLR 1 90 -275 2256 112 0 0 chr12 37694608 37694894 -106091561 + AluSg SINE Alu 1 286 -24 1386 187 49 113 chr12 37694894 37695198 -106091257 + MLT1A1 LTR MaLR 90 365 0 21 0 0 0 chr12 37697459 37697480 -106088975 + AT_rich Low_complexity Low_complexity 1 21 0 8020 29 0 0 chr12 37697698 37698976 -106087479 - L1PA2 LINE L1 -4 6151 4875 4905 34 0 0 chr12 37698976 37699557 -106086898 + L1PA2 LINE L1 4284 4864 -1282 22 0 0 0 chr12 37700219 37700241 -106086214 + AT_rich Low_complexity Low_complexity 1 22 0 1520 197 0 33 chr12 37700526 37700826 -106085629 - AluJo SINE Alu -22 290 1 24 85 0 0 chr12 37700976 37701035 -106085420 + AT_rich Low_complexity Low_complexity 1 59 0 302 294 110 9 chr12 37701365 37701474 -106084981 - L2 LINE L2 -16 3297 3178 2032 167 11 11 chr12 37701910 37702257 -106084198 - MER7A DNA MER2_type -1 345 1 7025 82 45 26 chr12 37703258 37704075 -106082380 - L1PA8 LINE L1 -3 6169 5340 2045 119 7 17 chr12 37704075 37704370 -106082085 - AluSq SINE Alu -21 292 1 7025 82 45 26 chr12 37704370 37704747 -106081708 - L1PA8 LINE L1 -832 5340 4972 1264 239 27 10 chr12 37704848 37705160 -106081295 - MER93a LTR ERV1 -36 366 4 201 74 0 0 chr12 37705291 37705318 -106081137 + (CTTAT)n Simple_repeat Simple_repeat 5 31 0 542 122 0 0 chr12 37705670 37705744 -106080711 - AluSp SINE Alu -101 212 139 1739 176 0 7 chr12 37705874 37706164 -106080291 + AluJb SINE Alu 1 288 -24 1984 132 7 20 chr12 37707015 37707319 -106079136 + AluSq SINE Alu 5 304 -9 348 323 66 38 chr12 37707435 37707782 -106078673 + L1ME3A LINE L1 5413 5769 -409 53 17 0 0 chr12 37707797 37707857 -106078598 + AT_rich Low_complexity Low_complexity 1 60 0 1843 150 0 3 chr12 37707857 37708144 -106078311 - AluSx SINE Alu -24 288 3 1826 156 9 38 chr12 37708146 37708319 -106078136 - AluSx SINE Alu -6 306 145 1760 160 11 0 chr12 37708319 37708601 -106077854 - AluY SINE Alu -19 292 8 1826 156 9 38 chr12 37708601 37708742 -106077713 - AluSx SINE Alu -167 145 1 239 247 54 21 chr12 37708782 37708875 -106077580 + L1ME3A LINE L1 5852 5947 -223 1486 161 4 28 chr12 37708922 37709176 -106077279 + AluSg/x SINE Alu 65 312 0 1433 136 207 0 chr12 37709521 37709763 -106076692 + AluSq SINE Alu 1 292 -21 223 284 11 11 chr12 37709923 37710035 -106076420 + (TA)n Simple_repeat Simple_repeat 1 112 0 2348 198 15 11 chr12 37710036 37710556 -106075899 + L1MC2 LINE L1 5616 6137 -207 1714 144 36 18 chr12 37710658 37710936 -106075519 - AluSg SINE Alu -27 283 1 721 272 62 6 chr12 37710962 37711285 -106075170 - L1MA9 LINE L1 -38 6274 5934 1679 127 4 28 chr12 37711704 37711957 -106074498 - AluSg/x SINE Alu -1 311 65 295 304 118 31 chr12 37712003 37712140 -106074315 - L1ME3 LINE L1 -214 5948 5824 2095 121 3 38 chr12 37712140 37712279 -106074176 + AluSx SINE Alu 4 146 -166 1840 151 11 0 chr12 37712279 37712563 -106073892 + AluY SINE Alu 9 295 -16 2095 121 3 38 chr12 37712563 37712737 -106073718 + AluSx SINE Alu 146 306 -6 1899 157 3 3 chr12 37712737 37713042 -106073413 + AluSx SINE Alu 1 305 -7 295 304 118 31 chr12 37713042 37713387 -106073068 - L1ME3 LINE L1 -337 5825 5423 2056 151 6 3 chr12 37713520 37713831 -106072624 - AluSq SINE Alu -1 312 1 1065 159 0 0 chr12 37713965 37714122 -106072333 + AluSg/x SINE Alu 140 296 -14 1330 98 6 11 chr12 37714280 37714463 -106071992 + AluYa5 SINE Alu 113 294 -17 1095 172 15 37 chr12 37714478 37714731 -106071724 + L1M2 LINE L1 5546 5794 -497 321 26 0 0 chr12 37714731 37714769 -106071686 + (CA)n Simple_repeat Simple_repeat 1 38 0 1095 172 15 37 chr12 37714769 37714783 -106071672 + L1M2 LINE L1 5794 5807 -484 2095 109 4 0 chr12 37714787 37715090 -106071365 - AluSp SINE Alu 0 310 7 2059 144 0 0 chr12 37715109 37715408 -106071047 - AluSq SINE Alu -14 299 1 2108 112 0 0 chr12 37715972 37716257 -106070198 + AluY SINE Alu 1 285 -26 31 44 0 0 chr12 37716257 37716302 -106070153 + AT_rich Low_complexity Low_complexity 1 45 0 2854 159 11 61 chr12 37716306 37716559 -106069896 - MER57B-int LTR ERV1 -7004 533 269 2153 131 0 0 chr12 37716559 37716864 -106069591 + AluSx SINE Alu 6 310 -2 2854 159 11 61 chr12 37716864 37717171 -106069284 - MER57B-int LTR ERV1 -7268 269 1 2611 149 12 2 chr12 37717171 37717601 -106068854 - MER57B LTR ERV1 0 434 1 1011 102 0 19 chr12 37717601 37717758 -106068697 + MER4E LTR ERV1 613 766 0 1015 251 14 11 chr12 37717758 37718045 -106068410 + L1ME2 LINE L1 5802 6089 -75 265 289 114 30 chr12 37718498 37718664 -106067791 - LTR33 LTR ERVL -35 486 307 704 326 122 19 chr12 37719443 37719940 -106066515 - L2 LINE L2 -206 3107 2544 228 222 103 56 chr12 37720103 37720229 -106066226 + MIR SINE MIR 77 208 -54 25 31 0 0 chr12 37721525 37721557 -106064898 + AT_rich Low_complexity Low_complexity 1 32 0 1424 231 65 24 chr12 37721557 37722349 -106064106 + L1ME1 LINE L1 5316 6160 -6 250 250 38 0 chr12 37722328 37722408 -106064047 + L1ME1 LINE L1 6077 6159 -7 * 714 304 52 46 chr12 37722433 37722933 -106063522 + L1ME3A LINE L1 3345 3847 -2299 361 236 60 76 chr12 37722945 37723025 -106063430 + L1MC4 LINE L1 7770 7850 -192 1814 166 76 17 chr12 37723025 37723369 -106063086 - THE1B LTR MaLR 0 364 1 361 236 60 76 chr12 37723369 37723538 -106062917 + L1MC4 LINE L1 7850 8015 -27 304 319 125 41 chr12 37723575 37723895 -106062560 + L1ME3A LINE L1 3832 4178 -1968 648 275 94 13 chr12 37724000 37724476 -106061979 + L1ME3A LINE L1 4303 4817 -1329 1233 294 102 19 chr12 37724547 37725606 -106060849 + L1ME3A LINE L1 5003 6155 -15 329 338 66 81 chr12 37725739 37726147 -106060308 + L1MC4 LINE L1 7347 7748 -294 22 0 0 0 chr12 37726590 37726612 -106059843 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 37726675 37726706 -106059749 + AT_rich Low_complexity Low_complexity 1 31 0 324 272 91 56 chr12 37727042 37727274 -106059181 - L1 LINE L1 -3692 2454 2215 303 328 71 35 chr12 37727427 37727738 -106058717 - LTR33 LTR ERVL -169 352 31 1639 328 18 8 chr12 37728621 37729240 -106057215 - ERVL LTR ERVL -1084 4680 4056 262 337 17 17 chr12 37729316 37729494 -106056961 - ERVL LTR ERVL -2125 3529 3352 282 331 87 17 chr12 37729531 37729703 -106056752 - ERVL LTR ERVL -2383 3271 3088 282 333 17 8 chr12 37729773 37729890 -106056565 - ERVL LTR ERVL -2726 3038 2921 798 127 15 37 chr12 37729947 37730081 -106056374 + FLAM_C SINE Alu 1 131 -2 549 321 38 19 chr12 37730119 37730531 -106055924 - LTR33 LTR ERVL -57 464 14 21 0 0 0 chr12 37732703 37732724 -106053731 + AT_rich Low_complexity Low_complexity 1 21 0 504 351 98 13 chr12 37733001 37733380 -106053075 + L3 LINE CR1 1150 1560 -17 1168 160 7 1 chr12 37733929 37738328 -106048127 + ALR/Alpha Satellite centromeric 1 4425 -1 1135 151 4 1 chr12 37738435 37740268 -106046187 + ALR/Alpha Satellite centromeric 1 1838 -40 1220 138 3 1 chr12 37740375 37749006 -106037449 - ALR/Alpha Satellite centromeric 0 8644 1 765 132 0 37 chr12 37749192 37749359 -106037096 - AluSp/q SINE Alu 0 313 172 1925 142 0 0 chr12 37749409 37749690 -106036765 + AluSg SINE Alu 29 309 -1 2070 222 118 6 chr12 37750064 37750581 -106035874 - MER77 LTR ERV1 -30 575 1 1856 180 3 0 chr12 37750691 37750991 -106035464 - AluJb SINE Alu -11 301 1 273 200 57 19 chr12 37750991 37751024 -106035431 + (TA)n Simple_repeat Simple_repeat 1 31 -78 1922 154 7 0 chr12 37751024 37751323 -106035132 + AluSx SINE Alu 1 301 -11 273 200 57 19 chr12 37751323 37751394 -106035061 + (TA)n Simple_repeat Simple_repeat 31 109 0 1476 202 13 3 chr12 37751694 37751996 -106034459 - MER44D DNA MER2_type -1 604 428 327 88 59 15 chr12 37751996 37752064 -106034391 + CT-rich Low_complexity Low_complexity 1 71 0 1969 154 3 22 chr12 37752071 37752389 -106034066 - AluSx SINE Alu 0 312 1 232 271 57 8 chr12 37752442 37752564 -106033891 + HAL1b LINE L1 1215 1342 -6 1819 161 11 0 chr12 37752699 37752978 -106033477 + AluSx SINE Alu 3 284 -28 1850 160 10 0 chr12 37753067 37753361 -106033094 + AluSx SINE Alu 1 297 -15 189 0 0 0 chr12 37754452 37754473 -106031982 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 189 74 0 0 chr12 37755205 37755232 -106031223 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1620 182 14 14 chr12 37755315 37755606 -106030849 - AluJb SINE Alu -17 295 5 559 157 0 3 chr12 37755736 37755971 -106030484 + AluSx SINE Alu 1 306 -3 1424 183 40 12 chr12 37756055 37756377 -106030078 - L1MB8 LINE L1 0 6178 5848 713 217 62 76 chr12 37756821 37757097 -106029358 - PABL_B LTR ERV1 -42 625 354 1940 143 16 0 chr12 37757544 37757851 -106028604 - AluSq SINE Alu -1 312 1 1948 132 7 0 chr12 37757857 37758146 -106028309 - AluSx SINE Alu -21 291 1 1167 130 0 11 chr12 37758154 37758338 -106028117 - AluSq SINE Alu -10 303 122 570 96 11 0 chr12 37758565 37758659 -106027796 + AluY SINE Alu 217 311 0 21 0 0 0 chr12 37758751 37758772 -106027683 + AT_rich Low_complexity Low_complexity 1 21 0 1958 144 3 13 chr12 37758944 37759249 -106027206 + AluSx SINE Alu 1 302 -10 1980 169 7 0 chr12 37759537 37759845 -106026610 + AluSx SINE Alu 1 310 -2 1587 177 3 34 chr12 37760668 37760962 -106025493 - AluJb SINE Alu -7 305 21 648 218 132 10 chr12 37761062 37761259 -106025196 - L1M4 LINE L1 -829 5317 5097 1333 232 25 9 chr12 37761734 37762075 -106024380 + MER93a LTR ERV1 4 395 -7 717 190 0 44 chr12 37762076 37762213 -106024242 - FLAM_A SINE Alu -2 131 1 577 132 0 11 chr12 37762451 37762542 -106023913 + L1PA16 LINE L1 6069 6158 -8 306 293 32 19 chr12 37762637 37762794 -106023661 - L1M4 LINE L1 -2281 3865 3707 357 322 76 19 chr12 37763198 37763409 -106023046 + MIR SINE MIR 28 250 -12 275 320 50 0 chr12 37763962 37764062 -106022393 + L2 LINE L2 3194 3298 -15 1977 141 0 7 chr12 37764156 37764463 -106021992 - AluSx SINE Alu 0 305 1 278 236 66 158 chr12 37764563 37764804 -106021651 + MIR SINE MIR 44 262 0 1501 147 11 18 chr12 37765089 37765374 -106021081 + L1MA4 LINE L1 6018 6300 0 1075 302 101 22 chr12 37765780 37766327 -106020128 - MER115 DNA AcHobo -50 643 15 1720 189 0 29 chr12 37766645 37766951 -106019504 + AluJb SINE Alu 1 297 -15 2045 124 35 0 chr12 37766960 37767250 -106019205 + AluSc SINE Alu 1 300 -9 1511 152 45 8 chr12 37767250 37767514 -106018941 - MER54A LTR ERVL -627 274 1 1555 136 140 0 chr12 37767692 37767956 -106018499 - AluSx SINE Alu -1 301 1 2300 110 3 0 chr12 37768557 37768857 -106017598 - AluSp SINE Alu -12 301 1 823 196 7 0 chr12 37768871 37769019 -106017436 - AluSg/x SINE Alu -19 293 145 876 119 113 12 chr12 37769122 37769282 -106017173 + AluSg/x SINE Alu 127 302 -8 2209 125 3 0 chr12 37769290 37769601 -106016854 + AluSq SINE Alu 1 312 -1 952 170 0 53 chr12 37769601 37769783 -106016672 + AluSg/x SINE Alu 127 298 -14 704 188 0 0 chr12 37769992 37770109 -106016346 + FLAM_C SINE Alu 1 117 -16 619 52 10 10 chr12 37770112 37770209 -106016246 + (TAAAA)n Simple_repeat Simple_repeat 2 98 0 442 157 0 0 chr12 37770233 37770303 -106016152 + AluJ/FRAM SINE Alu 223 292 -20 1366 193 4 0 chr12 37770753 37770997 -106015458 + AluJb SINE Alu 1 245 -67 1883 137 0 7 chr12 37770997 37771308 -106015147 + AluSx SINE Alu 34 312 0 1421 192 19 23 chr12 37771317 37771624 -106014831 + AluJo SINE Alu 6 311 -1 3940 163 81 34 chr12 37771678 37772414 -106014041 - MER21B LTR ERV1 0 863 82 2200 103 16 32 chr12 37772414 37772725 -106013730 + AluSx SINE Alu 3 308 -4 3940 163 81 34 chr12 37772725 37772812 -106013643 - MER21B LTR ERV1 -781 82 1 1812 156 20 48 chr12 37773120 37773517 -106012938 - LTR25 LTR ERV1 -47 747 362 761 168 81 32 chr12 37773517 37773846 -106012609 + LTR46 LTR ERV1 1 460 0 518 181 57 9 chr12 37773848 37773953 -106012502 - LTR25 LTR ERV1 -455 339 230 401 179 15 119 chr12 37773928 37774062 -106012393 - MER61E LTR ERV1 -417 152 33 * 1438 77 17 0 chr12 37774724 37774905 -106011550 + AluSg/x SINE Alu 112 295 -15 386 299 130 42 chr12 37774908 37775262 -106011193 - L2 LINE L2 -82 3231 2847 281 132 0 0 chr12 37775314 37775352 -106011103 - Alu SINE Alu -264 38 1 2323 107 10 0 chr12 37775727 37776036 -106010419 - AluSx SINE Alu 0 312 1 1831 170 3 0 chr12 37776086 37776386 -106010069 - AluSx SINE Alu -7 305 5 1285 138 4 2 chr12 37776507 37789116 -105997339 - ALR/Alpha Satellite centromeric 0 12635 1 548 130 0 0 chr12 37789217 37789294 -105997161 - AluS SINE Alu -232 78 2 1907 144 7 7 chr12 37789303 37789587 -105996868 - AluSg SINE Alu -24 286 3 250 237 0 40 chr12 37789642 37789718 -105996737 - MER89 LTR ERV1 0 559 487 2055 239 11 12 chr12 37789722 37789845 -105996610 - L1P LINE L1 -858 5288 5166 1781 124 19 8 chr12 37789845 37790110 -105996345 - AluSg SINE Alu -3 307 40 2055 239 11 12 chr12 37790110 37790546 -105995909 - L1P LINE L1 -980 5166 4730 2324 152 19 17 chr12 37790556 37790976 -105995479 + L1PA15 LINE L1 5745 6165 0 2298 120 3 0 chr12 37791042 37791350 -105995105 + AluSg SINE Alu 1 309 -1 2079 133 0 3 chr12 37791482 37791782 -105994673 + AluY SINE Alu 1 299 -12 2505 202 105 4 chr12 37792027 37792551 -105993904 - MER77 LTR ERV1 -28 577 1 264 277 24 0 chr12 37792553 37792636 -105993819 + L1ME LINE L1 5492 5576 -545 1702 191 10 0 chr12 37792676 37792964 -105993491 - AluJb SINE Alu -21 291 1 262 218 39 0 chr12 37792964 37792997 -105993458 + (TA)n Simple_repeat Simple_repeat 1 31 -407 1826 168 3 0 chr12 37792997 37793295 -105993160 + AluSx SINE Alu 1 299 -13 262 218 39 0 chr12 37793295 37793386 -105993069 + (TA)n Simple_repeat Simple_repeat 31 438 0 1520 207 19 10 chr12 37793666 37793975 -105992480 - MER44D DNA MER2_type -1 604 421 382 174 18 0 chr12 37793980 37794089 -105992366 + CT-rich Low_complexity Low_complexity 2 112 0 1707 193 7 0 chr12 37794092 37794397 -105992058 - AluSx SINE Alu -2 310 4 266 276 57 8 chr12 37794453 37794576 -105991879 + HAL1b LINE L1 1215 1343 -5 659 160 38 0 chr12 37794700 37794806 -105991649 + AluSq/x SINE Alu 2 111 -201 1799 131 8 8 chr12 37794834 37795101 -105991354 - AluSx SINE Alu -22 290 24 590 80 0 45 chr12 37795223 37795344 -105991111 - AluSg/x SINE Alu 0 309 203 192 77 0 0 chr12 37796924 37796950 -105989505 + (TG)n Simple_repeat Simple_repeat 1 26 0 221 130 0 43 chr12 37797192 37797238 -105989217 + (TTTTTG)n Simple_repeat Simple_repeat 6 49 0 1232 213 4 34 chr12 37797319 37797582 -105988873 - AluJb SINE Alu -57 255 1 507 140 13 7 chr12 37797709 37797945 -105988510 + AluSx SINE Alu 1 310 0 1518 177 77 3 chr12 37798023 37798323 -105988132 - L1MB8 LINE L1 -9 6169 5848 333 0 0 0 chr12 37798414 37798451 -105988004 + (TG)n Simple_repeat Simple_repeat 2 38 0 1382 149 9 0 chr12 37798459 37798674 -105987781 - AluSg/x SINE Alu -17 295 79 1634 169 10 65 chr12 37798694 37799001 -105987454 - AluJb SINE Alu -20 292 3 868 119 22 15 chr12 37799008 37799142 -105987313 - FLAM_C SINE Alu -8 135 1 375 223 0 39 chr12 37799142 37799245 -105987210 - MER33 DNA MER1_type -189 135 37 2079 136 0 0 chr12 37799597 37799883 -105986572 - AluSx SINE Alu -16 296 11 456 51 0 0 chr12 37800003 37800062 -105986393 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 1984 133 11 3 chr12 37800072 37800357 -105986098 - AluSq SINE Alu -26 287 1 807 193 7 0 chr12 37800360 37800500 -105985955 - AluY SINE Alu -170 141 1 220 133 22 22 chr12 37801480 37801525 -105984930 + GA-rich Low_complexity Low_complexity 2 46 0 1252 173 127 11 chr12 37801569 37801852 -105984603 - SST1 Satellite centromeric -10 1553 1238 830 142 0 15 chr12 37801858 37801992 -105984463 + AluSg/x SINE Alu 155 286 -24 7325 162 27 17 chr12 37802075 37803468 -105982987 - SST1 Satellite centromeric -157 1406 1 1297 297 61 53 chr12 37804020 37804852 -105981603 - SST1 Satellite centromeric -312 1251 413 516 278 69 19 chr12 37804863 37805079 -105981376 - SST1 Satellite centromeric -1331 232 6 265 115 16 16 chr12 37805768 37805829 -105980626 + (CA)n Simple_repeat Simple_repeat 1 61 0 245 196 18 0 chr12 37805832 37805888 -105980567 + GA-rich Low_complexity Low_complexity 1 57 0 249 33 0 0 chr12 37805888 37805918 -105980537 + (CA)n Simple_repeat Simple_repeat 2 31 0 2066 268 63 43 chr12 37805933 37807293 -105979162 - SST1 Satellite centromeric -1315 1387 1 249 210 16 0 chr12 37808015 37808077 -105978378 + GA-rich Low_complexity Low_complexity 1 63 0 222 91 0 0 chr12 37808077 37808110 -105978345 + (CA)n Simple_repeat Simple_repeat 2 34 0 2946 259 65 51 chr12 37808114 37809399 -105977056 - SST1 Satellite centromeric -1 1562 251 225 0 0 0 chr12 37809399 37809424 -105977031 + (CCCCAG)n Simple_repeat Simple_repeat 3 27 0 2946 259 65 51 chr12 37809424 37809679 -105976776 - SST1 Satellite centromeric -1312 251 1 1064 194 6 5 chr12 37809971 37813524 -105972931 + ALR/Alpha Satellite centromeric 1 3559 0 1019 191 27 1 chr12 37813539 37813864 -105972591 + ALR/Alpha Satellite centromeric 1 333 -82 341 165 10 0 chr12 37814488 37814585 -105971870 + (CA)n Simple_repeat Simple_repeat 1 98 0 397 279 66 69 chr12 37814590 37814998 -105971457 - SST1 Satellite centromeric -27 1536 1130 740 288 50 52 chr12 37815401 37815942 -105970513 - SST1 Satellite centromeric -892 671 132 244 287 0 0 chr12 37817022 37817116 -105969339 + (CA)n Simple_repeat Simple_repeat 1 94 0 608 283 123 40 chr12 37817449 37818028 -105968427 - SST1 Satellite centromeric -805 758 132 1010 173 11 3 chr12 37818138 37820410 -105966045 + ALR/Alpha Satellite centromeric 1 2289 -22 1225 166 7 3 chr12 37820423 37829859 -105956596 + ALR/Alpha Satellite centromeric 1 9397 -2555 252 0 0 0 chr12 37829859 37829887 -105956568 + (CA)n Simple_repeat Simple_repeat 1 28 0 1225 166 7 3 chr12 37829887 37831929 -105954526 + ALR/Alpha Satellite centromeric 9397 11880 -72 2211 111 0 46 chr12 37831929 37832253 -105954202 + AluY SINE Alu 1 309 -2 1225 166 7 3 chr12 37832253 37832326 -105954129 + ALR/Alpha Satellite centromeric 11880 11951 -1 180 111 0 0 chr12 37832327 37832354 -105954101 + (T)n Simple_repeat Simple_repeat 1 27 0 2455 104 0 0 chr12 37832354 37832680 -105953775 - LTR17 LTR ERV1 -454 326 1 9726 75 7 4 chr12 37832680 37833907 -105952548 - HERV17 LTR ERV1 0 8626 7397 1974 155 34 8 chr12 37833890 37834315 -105952140 - HERV17 LTR ERV1 -2947 5679 4746 * 1266 134 8 2 chr12 37834416 37839726 -105946729 - ALR/Alpha Satellite centromeric 0 5345 1 7788 34 6 0 chr12 37839844 37840723 -105945732 + L1PA4 LINE L1 5271 6154 -1 1902 133 0 61 chr12 37840744 37841074 -105945381 - AluSg SINE Alu 0 310 1 1120 119 6 0 chr12 37841076 37841253 -105945202 + L1P LINE L1 4999 5176 -970 463 167 0 0 chr12 37841435 37841501 -105944954 - AluJ/FLAM SINE Alu -246 66 1 1609 171 0 21 chr12 37841522 37841803 -105944652 - AluSx SINE Alu -3 309 35 3360 75 2 5 chr12 37841804 37842232 -105944223 + LTR14C LTR ERVK 6 432 -155 1093 167 8 3 chr12 37842333 37843315 -105943140 - ALR/Alpha Satellite centromeric -1 986 1 2073 149 3 0 chr12 37843531 37843833 -105942622 + AluSp SINE Alu 1 303 -10 422 244 105 108 chr12 37844011 37844420 -105942035 + L1M4c LINE L1 1088 1495 -4808 * 1004 338 18 6 chr12 37844388 37844903 -105941552 + L1M4c LINE L1 1304 1824 -4560 362 211 75 132 chr12 37844960 37845107 -105941348 + L1M4c LINE L1 1974 2128 -4256 2036 122 17 3 chr12 37845107 37845401 -105941054 + AluSx SINE Alu 1 298 -14 362 211 75 132 chr12 37845401 37845452 -105941003 + L1M4c LINE L1 2128 2156 -4228 1926 149 0 20 chr12 37845452 37845754 -105940701 + AluSg SINE Alu 1 296 -14 362 211 75 132 chr12 37845754 37845819 -105940636 + L1M4c LINE L1 2156 2223 -4161 269 291 31 16 chr12 37846181 37846308 -105940147 + LTR54B LTR ERV1 18 146 -352 1702 140 85 4 chr12 37846441 37846712 -105939743 + AluSg SINE Alu 1 293 -17 237 301 0 26 chr12 37847576 37847689 -105938766 + L1MC/D LINE L1 5665 5774 -585 2401 59 0 39 chr12 37848487 37848794 -105937661 + AluY SINE Alu 5 299 -12 210 281 169 0 chr12 37848864 37848953 -105937502 - L2 LINE L2 -498 2816 2713 1932 158 7 7 chr12 37849665 37850018 -105936437 - AluSx SINE Alu 0 354 2 755 274 53 55 chr12 37850052 37850628 -105935827 + L1M4c LINE L1 1185 1761 -4552 454 261 37 52 chr12 37850629 37850901 -105935554 + L1M4c LINE L1 1585 1852 -4532 2084 135 0 0 chr12 37851089 37851414 -105935041 + AluSq SINE Alu 1 313 0 770 239 22 28 chr12 37851458 37851638 -105934817 + AluJb SINE Alu 4 182 -130 264 228 38 25 chr12 37851679 37851758 -105934697 + L3 LINE CR1 1307 1386 -191 328 253 167 37 chr12 37851881 37852043 -105934412 + MER5A DNA MER1_type 7 189 0 1207 148 18 18 chr12 37853515 37853732 -105932723 - AluJo SINE Alu 0 312 96 1238 196 50 18 chr12 37853878 37854158 -105932297 - AluJo SINE Alu -23 289 1 974 190 0 16 chr12 37854174 37854358 -105932097 + FRAM SINE Alu 1 176 0 230 0 33 0 chr12 37854466 37854496 -105931959 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5088 66 36 0 chr12 37854508 37855142 -105931313 + MER11D LTR ERVK 1 657 -240 304 259 172 43 chr12 37856626 37856742 -105929713 - AluJb SINE Alu 0 302 172 689 165 0 9 chr12 37856742 37856851 -105929604 + AluJb SINE Alu 180 287 -25 220 143 0 24 chr12 37856942 37856984 -105929471 + (TTA)n Simple_repeat Simple_repeat 2 42 0 566 219 0 0 chr12 37856992 37857106 -105929349 - AluSg/x SINE Alu 0 309 196 299 201 59 46 chr12 37857106 37857258 -105929197 + AluJb SINE Alu 78 218 -84 1290 188 0 39 chr12 37857258 37857514 -105928941 - AluJb SINE Alu -54 258 13 348 145 35 48 chr12 37857547 37857692 -105928763 + CT-rich Low_complexity Low_complexity 2 144 0 1717 153 32 4 chr12 37858330 37858611 -105927844 - AluSx SINE Alu -23 289 1 207 0 0 0 chr12 37858643 37858666 -105927789 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1316 206 29 4 chr12 37858860 37859132 -105927323 - AluSg SINE Alu -31 279 1 356 292 153 15 chr12 37859195 37859397 -105927058 - LTR54B LTR ERV1 -254 244 15 1255 180 137 23 chr12 37859711 37859967 -105926488 + AluJb SINE Alu 1 285 -17 31 58 0 0 chr12 37860033 37860085 -105926370 + AT_rich Low_complexity Low_complexity 1 52 0 779 186 7 7 chr12 37860102 37860242 -105926213 - AluJb SINE Alu -171 141 2 227 54 27 0 chr12 37860246 37860283 -105926172 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 13492 40 0 0 chr12 37861034 37862672 -105923783 - L1PA2 LINE L1 -2326 3820 2183 13451 39 6 1 chr12 37862672 37864979 -105921476 + L1PA2 LINE L1 3840 6155 0 28 71 0 0 chr12 37864980 37865036 -105921419 + AT_rich Low_complexity Low_complexity 1 56 0 2348 105 3 3 chr12 37865128 37865441 -105921014 - AluSp SINE Alu 0 313 1 27 29 0 0 chr12 37865671 37865705 -105920750 + AT_rich Low_complexity Low_complexity 1 34 0 1915 130 0 7 chr12 37865723 37866041 -105920414 - AluSg SINE Alu 0 316 1 993 203 67 17 chr12 37866452 37866662 -105919793 + L1MB7 LINE L1 5904 6122 -58 569 233 16 8 chr12 37866662 37866791 -105919664 - FLAM_C SINE Alu -1 132 3 993 203 67 17 chr12 37866791 37866854 -105919601 + L1MB7 LINE L1 6122 6180 0 2214 136 0 0 chr12 37869482 37869791 -105916664 + AluSg SINE Alu 2 310 0 228 196 71 18 chr12 37870181 37870237 -105916218 + L1MCc LINE L1 858 916 -5507 263 111 0 19 chr12 37875178 37875232 -105911223 + (TA)n Simple_repeat Simple_repeat 2 54 0 1332 238 0 4 chr12 37875267 37875536 -105910919 - AluJo SINE Alu -44 268 1 443 207 0 0 chr12 37875572 37875659 -105910796 + AluJ/FRAM SINE Alu 226 312 0 1959 148 6 0 chr12 37876392 37876717 -105909738 + L1P LINE L1 4679 5005 -1141 40834 59 2 0 chr12 37876728 37881807 -105904648 + L1P LINE L1 4 5090 -1056 7466 78 3 2 chr12 37881907 37882857 -105903598 - HERV17 LTR ERV1 -3199 5427 4477 833 207 5 8 chr12 37882857 37883107 -105903348 + ALR/Alpha Satellite centromeric 1 249 -22 42630 60 3 1 chr12 37883110 37889245 -105897210 + L1PA4 LINE L1 1 6149 -6 1159 164 0 0 chr12 37889247 37889789 -105896666 + ALR/Alpha Satellite centromeric 1 542 -11 1195 158 4 5 chr12 37889801 37892961 -105893494 + ALR/Alpha Satellite centromeric 1 3156 -26 32 81 0 0 chr12 37893199 37893273 -105893182 + GC_rich Low_complexity Low_complexity 1 74 0 93 95 0 0 chr12 37893303 37893566 -105892889 + GC_rich Low_complexity Low_complexity 1 263 0 32 96 0 0 chr12 37893572 37893655 -105892800 + GC_rich Low_complexity Low_complexity 1 83 0 965 194 16 61 chr12 37894019 37894143 -105892312 - L1MB4 LINE L1 -205 5946 5818 1388 220 0 30 chr12 37894143 37894443 -105892012 - AluJb SINE Alu -20 292 2 965 194 16 61 chr12 37894443 37894599 -105891856 - L1MB4 LINE L1 -333 5818 5677 1445 173 0 0 chr12 37894666 37894891 -105891564 + AluJb SINE Alu 1 225 -87 1291 218 72 66 chr12 37894892 37895395 -105891060 - L1MB4 LINE L1 -504 5676 5187 420 300 7 0 chr12 37895493 37895643 -105890812 - L1MB4 LINE L1 -979 5167 5017 2528 148 19 7 chr12 37895647 37896065 -105890390 - L1PA14 LINE L1 -9 6152 5730 7571 199 49 21 chr12 37896105 37896420 -105890035 - L1PA14 LINE L1 -417 5744 5439 2298 122 0 0 chr12 37896420 37896723 -105889732 - AluSc SINE Alu -6 303 1 7571 199 49 21 chr12 37896723 37898742 -105887713 - L1PA14 LINE L1 -722 5439 3347 1733 269 43 28 chr12 37898781 37899494 -105886961 - L1MB4 LINE L1 -1115 5031 4308 1919 132 45 0 chr12 37899707 37899994 -105886461 + AluSq SINE Alu 1 300 -13 1197 309 30 23 chr12 37900242 37900679 -105885776 + LTR40a LTR ERVL 72 511 -8 322 292 117 0 chr12 37900956 37901076 -105885379 + HERVL40 LTR ERVL 1031 1164 -4366 1309 212 63 0 chr12 37901594 37901863 -105884592 - AluJb SINE Alu -25 287 2 21 36 0 0 chr12 37901913 37901941 -105884514 + AT_rich Low_complexity Low_complexity 1 28 0 288 267 23 118 chr12 37902304 37902525 -105883930 - MIR SINE MIR -18 244 45 667 91 0 0 chr12 37902874 37902962 -105883493 - HERV17 LTR ERV1 -3257 5369 5282 1739 164 0 17 chr12 37903076 37903386 -105883069 + AluSx SINE Alu 3 307 0 21 0 0 0 chr12 37903398 37903419 -105883036 + AT_rich Low_complexity Low_complexity 1 21 0 3689 228 48 15 chr12 37903517 37903817 -105882638 + L1M1 LINE L1 1453 1742 -5823 255 61 0 0 chr12 37903817 37903850 -105882605 + (CA)n Simple_repeat Simple_repeat 2 34 0 3689 228 48 15 chr12 37903850 37904359 -105882096 + L1M1 LINE L1 1742 2289 -5276 1395 136 120 12 chr12 37904377 37904635 -105881820 - AluSg SINE Alu -24 286 1 559 182 0 10 chr12 37904707 37904806 -105881649 + MER4A LTR ERV1 1 98 -566 1473 175 8 77 chr12 37904806 37905177 -105881278 + MER4A LTR ERV1 261 664 0 1771 151 58 0 chr12 37905551 37905842 -105880613 - AluSx SINE Alu -4 308 1 826 279 40 5 chr12 37906444 37906666 -105879789 + MIR SINE MIR 18 247 -15 1832 163 27 10 chr12 37906738 37907038 -105879417 + AluJb SINE Alu 1 305 -7 278 221 54 188 chr12 37907039 37907162 -105879293 + MIR SINE MIR 47 124 -138 2027 149 0 0 chr12 37907162 37907450 -105879005 + AluSx SINE Alu 1 288 -24 278 221 54 188 chr12 37907450 37907566 -105878889 + MIR SINE MIR 124 254 -8 526 264 113 59 chr12 37907588 37907763 -105878692 - MIR SINE MIR 0 262 69 1609 179 4 11 chr12 37907763 37908037 -105878418 - AluJo SINE Alu -23 289 18 526 264 113 59 chr12 37908037 37908100 -105878355 - MIR SINE MIR -193 69 11 24 0 0 0 chr12 37909729 37909753 -105876702 + AT_rich Low_complexity Low_complexity 1 24 0 1739 154 68 0 chr12 37910074 37910353 -105876102 - AluSx SINE Alu -14 298 1 1565 260 18 14 chr12 37910371 37910864 -105875591 - L1MB2 LINE L1 -3 6404 5910 500 256 47 24 chr12 37910851 37911062 -105875393 - L1MB2 LINE L1 -1285 5097 4882 * 7435 87 6 9 chr12 37911111 37912172 -105874283 - MER11C LTR ERVK -14 1057 1 180 0 0 0 chr12 37912188 37912208 -105874247 + (A)n Simple_repeat Simple_repeat 1 20 0 411 191 22 0 chr12 37912208 37912297 -105874158 - L1MB2 LINE L1 -1539 4843 4753 832 265 36 70 chr12 37912306 37912724 -105873731 - L1MB2 LINE L1 -3267 3115 2684 225 0 0 0 chr12 37912724 37912749 -105873706 + (CA)n Simple_repeat Simple_repeat 2 26 0 832 265 36 70 chr12 37912749 37912840 -105873615 - L1MB2 LINE L1 -3698 2684 2591 245 27 54 0 chr12 37912840 37912877 -105873578 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1943 79 79 0 chr12 37912883 37913137 -105873318 - AluY SINE Alu -36 275 2 832 265 36 70 chr12 37913137 37913420 -105873035 - L1MB2 LINE L1 -3796 2586 2347 1592 62 14 0 chr12 37913420 37913629 -105872826 - L1PA4 LINE L1 -7 6148 5937 1098 154 5 3 chr12 37913782 37921235 -105865220 + ALR/Alpha Satellite centromeric 1 7467 -55 869 264 47 41 chr12 37922156 37922520 -105863935 + MLT1B LTR MaLR 25 390 0 199 22 0 130 chr12 37923267 37923313 -105863142 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 903 235 12 68 chr12 37923313 37923653 -105862802 - L1MA9 LINE L1 -41 6271 5951 6213 23 0 0 chr12 37923925 37924678 -105861777 - L1PA3 LINE L1 0 6155 5403 * 8518 28 0 0 chr12 37924675 37925747 -105860708 + L1PA3 LINE L1 4326 5397 -749 627 164 0 15 chr12 37926809 37927079 -105859376 + AluSx SINE Alu 6 334 0 421 244 78 35 chr12 37927091 37927206 -105859249 + FRAM SINE Alu 5 124 -52 862 42 17 8 chr12 37927216 37927335 -105859120 + (GAAA)n Simple_repeat Simple_repeat 4 123 0 1564 146 50 0 chr12 37927339 37927579 -105858876 + AluSc SINE Alu 50 301 -8 962 194 17 46 chr12 37927694 37927712 -105858743 - AluSg/x SINE Alu 0 312 295 2161 140 0 0 chr12 37927712 37928020 -105858435 - AluSg SINE Alu -2 308 1 962 194 17 46 chr12 37928020 37928238 -105858217 - AluSg/x SINE Alu -17 295 83 1961 119 0 31 chr12 37928246 37928566 -105857889 - AluSg SINE Alu 0 310 1 383 119 0 0 chr12 37928728 37928787 -105857668 - AluJ/FLAM SINE Alu -239 63 5 919 198 140 27 chr12 37928856 37929113 -105857342 - AluJo SINE Alu -16 286 1 219 69 0 0 chr12 37929149 37929178 -105857277 + (T)n Simple_repeat Simple_repeat 1 29 0 203 164 18 55 chr12 37929543 37929598 -105856857 + G-rich Low_complexity Low_complexity 2 54 0 972 216 25 4 chr12 37929671 37929916 -105856539 + L1PA13 LINE L1 5903 6152 -11 1886 126 7 7 chr12 37930125 37930418 -105856037 - AluSx SINE Alu -9 303 11 590 241 16 16 chr12 37930739 37930930 -105855525 - MER39B LTR ERV1 -1 652 462 620 210 0 7 chr12 37930931 37931069 -105855386 + MER39B LTR ERV1 275 411 -242 1842 156 4 0 chr12 37931287 37931562 -105854893 + AluSp SINE Alu 5 280 -33 201 180 33 33 chr12 37933100 37933161 -105853294 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 436 212 6 11 chr12 37933468 37933647 -105852808 + CT-rich Low_complexity Low_complexity 2 179 0 567 185 0 22 chr12 37933664 37933848 -105852607 + CT-rich Low_complexity Low_complexity 1 180 0 1146 156 8 2 chr12 37934004 37944649 -105841806 + ALR/Alpha Satellite centromeric 1 10702 -23 1010 174 0 6 chr12 37944807 37944979 -105841476 + AluSg/x SINE Alu 117 287 -25 198 0 0 0 chr12 37944982 37945004 -105841451 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5138 85 10 0 chr12 37945004 37945721 -105840734 + L1PA8 LINE L1 5359 6082 -90 566 110 0 0 chr12 37945721 37945803 -105840652 + AluS SINE Alu 1 82 -231 660 48 0 0 chr12 37945803 37945887 -105840568 + L1PA8 LINE L1 6071 6154 -18 490 208 60 40 chr12 37946540 37946689 -105839766 - MER93a LTR ERV1 0 402 251 2334 81 7 0 chr12 37946716 37947014 -105839441 + AluSp SINE Alu 1 300 -13 1990 124 0 20 chr12 37947101 37947400 -105839055 + AluY SINE Alu 6 298 -13 798 303 45 24 chr12 37947448 37947913 -105838542 - L1 LINE L1 -1830 4316 3842 309 200 62 0 chr12 37947922 37948002 -105838453 - L1 LINE L1 -2551 3595 3511 5456 73 0 4 chr12 37948142 37948895 -105837560 + HERVK11D LTR ERVK 113 862 -6890 30916 42 1 1 chr12 37948895 37952808 -105833647 + HERVK11D LTR ERVK 3073 6984 -768 4603 64 0 6 chr12 37952908 37953532 -105832923 + HERVK11D LTR ERVK 7133 7752 0 6147 87 27 0 chr12 37953554 37954404 -105832051 + MER11D LTR ERVK 25 897 0 1736 160 7 18 chr12 37954404 37954686 -105831769 - AluSx SINE Alu -33 279 1 278 304 106 50 chr12 37954801 37954962 -105831493 - MIR3 SINE MIR -9 199 30 217 254 17 0 chr12 37955725 37955784 -105830671 - L2 LINE L2 0 3313 3254 180 321 54 0 chr12 37955770 37955826 -105830629 - L2 LINE L2 -696 2618 2560 * 1877 160 26 11 chr12 37956826 37957309 -105829146 + L1M2 LINE L1 2536 3029 -3819 1104 145 4 1 chr12 37957410 37960472 -105825983 + ALR/Alpha Satellite centromeric 1 3069 -12 1190 147 7 3 chr12 37960487 37965513 -105820942 + ALR/Alpha Satellite centromeric 1 5045 -32 460 325 91 56 chr12 37965991 37966937 -105819518 + L1MEc LINE L1 36 1014 -5382 554 312 27 15 chr12 37966964 37967294 -105819161 + L1MEc LINE L1 1451 1784 -4612 11798 43 2 11 chr12 37968027 37970244 -105816211 + L1PA5 LINE L1 3928 6134 -20 311 232 10 32 chr12 37970353 37970466 -105815989 + L1ME2 LINE L1 5701 5808 -356 716 225 92 38 chr12 37970483 37970745 -105815710 + L1ME2 LINE L1 5888 6163 -1 1916 241 43 51 chr12 37970985 37971615 -105814840 + MLT1E2 LTR MaLR 1 625 -1 1363 156 135 32 chr12 37971746 37972086 -105814369 - THE1C LTR MaLR 0 375 1 416 340 153 0 chr12 37973637 37973840 -105812615 - MIR SINE MIR -4 258 25 1018 220 20 43 chr12 37974085 37974340 -105812115 + MER96B DNA MER1_type? 1 249 -168 405 341 76 31 chr12 37975202 37975492 -105810963 + HAL1b LINE L1 631 933 -415 1691 154 48 50 chr12 37976079 37976260 -105810195 + THE1C LTR MaLR 1 181 -194 1817 150 7 24 chr12 37976260 37976554 -105809901 + AluSx SINE Alu 7 295 -17 1691 154 48 50 chr12 37976554 37976748 -105809707 + THE1C LTR MaLR 181 375 0 1644 155 140 3 chr12 37976834 37977156 -105809299 - MER47A DNA MER2_type 0 366 1 204 97 0 0 chr12 37977175 37977206 -105809249 + (CA)n Simple_repeat Simple_repeat 2 32 0 234 241 0 0 chr12 37977206 37977260 -105809195 + GA-rich Low_complexity Low_complexity 1 54 0 293 266 80 50 chr12 37977353 37977552 -105808903 + L1ME3A LINE L1 4132 4336 -1810 327 265 0 0 chr12 37977610 37977678 -105808777 - MER96B DNA MER1_type? -107 68 1 472 321 6 0 chr12 37977689 37977854 -105808601 + L1ME3A LINE L1 5401 5566 -604 244 259 0 0 chr12 37977859 37977913 -105808542 + L1ME3A LINE L1 5664 5717 -453 398 214 0 11 chr12 37977946 37978035 -105808420 + L1ME3A LINE L1 5797 5884 -286 1227 223 130 37 chr12 37978050 37978407 -105808048 - MLT1D LTR MaLR 0 505 94 2156 107 0 16 chr12 37978407 37978724 -105807731 - AluSx SINE Alu 0 312 1 1227 223 130 37 chr12 37978724 37978828 -105807627 - MLT1D LTR MaLR -411 94 1 22 94 0 0 chr12 37979015 37979079 -105807376 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr12 37979100 37979121 -105807334 + AT_rich Low_complexity Low_complexity 1 21 0 315 216 36 45 chr12 37979154 37979265 -105807190 + HAL1b LINE L1 1094 1203 -145 237 148 182 45 chr12 37979360 37979448 -105807007 - L1ME4a LINE L1 -41 6080 5981 * 287 186 106 53 chr12 37979423 37979536 -105806919 + HAL1b LINE L1 1228 1346 -2 280 294 95 95 chr12 37979608 37979829 -105806626 - MIR SINE MIR -12 250 30 1785 61 17 4 chr12 37981579 37981809 -105804646 + AluY SINE Alu 65 297 -14 202 182 36 0 chr12 37982462 37982517 -105803938 + (TA)n Simple_repeat Simple_repeat 1 57 0 405 198 12 0 chr12 37982894 37982975 -105803480 + MER94 DNA DNA 4 85 -49 415 314 93 11 chr12 37983143 37983423 -105803032 - L1ME4a LINE L1 -175 5946 5644 1254 218 45 23 chr12 37983583 37983891 -105802564 - MLT1A2 LTR MaLR 0 374 60 24 32 0 0 chr12 37985725 37985756 -105800699 + AT_rich Low_complexity Low_complexity 1 31 0 2970 158 84 24 chr12 37986514 37987284 -105799171 + MER21A LTR ERV1 1 931 0 21 57 0 0 chr12 37987926 37987961 -105798494 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr12 37988201 37988230 -105798225 + AT_rich Low_complexity Low_complexity 1 29 0 1301 196 13 4 chr12 37988593 37988828 -105797627 + MER41D LTR ERV1 320 556 -1 882 277 174 22 chr12 37988834 37989335 -105797120 - HAL1 LINE L1 -364 2143 1567 1310 323 131 16 chr12 37989369 37989438 -105797017 - HAL1 LINE L1 -1037 1470 1410 369 0 0 0 chr12 37989438 37989479 -105796976 + (TG)n Simple_repeat Simple_repeat 2 42 0 1310 323 131 16 chr12 37989479 37990612 -105795843 - HAL1 LINE L1 -1097 1410 129 1754 160 3 31 chr12 37991335 37991657 -105794798 + AluSx SINE Alu 1 314 0 1874 129 48 40 chr12 37993127 37993499 -105792956 + THE1C LTR MaLR 1 375 0 2039 99 3 26 chr12 37994668 37994971 -105791484 - AluY SINE Alu -15 296 1 2024 141 0 3 chr12 37995232 37995537 -105790918 + AluSx SINE Alu 1 304 -8 569 247 39 56 chr12 37996113 37996344 -105790111 - L1MC5 LINE L1 -763 7198 6972 507 336 55 42 chr12 37996491 37996803 -105789652 + L1M3 LINE L1 5 320 -5571 378 350 35 65 chr12 37996904 37997289 -105789166 + L1M3 LINE L1 203 613 -5278 664 317 8 8 chr12 37997461 37997704 -105788751 + L1M3 LINE L1 668 910 -4991 9340 207 40 31 chr12 37997719 37999788 -105786667 + L1M3 LINE L1 2531 4639 -1353 1670 144 0 4 chr12 37999788 38000219 -105786236 + AluSx SINE Alu 40 312 0 9340 207 40 31 chr12 38000219 38001201 -105785254 + L1M3 LINE L1 4639 5610 -382 303 259 47 0 chr12 38001206 38001291 -105785164 + L1MC4 LINE L1 6615 6703 -1339 281 148 49 37 chr12 38001292 38001373 -105785082 + (TATG)n Simple_repeat Simple_repeat 1 82 0 1204 137 9 3 chr12 38001498 38009924 -105776531 + ALR/Alpha Satellite centromeric 1 8474 -1 2831 216 29 82 chr12 38009928 38010946 -105775509 + LTR5 LTR ERVK 6 969 0 1170 155 4 2 chr12 38010953 38015531 -105770924 + ALR/Alpha Satellite centromeric 1 4588 -50 1161 167 8 3 chr12 38015631 38029128 -105757327 + ALR/Alpha Satellite centromeric 1 13574 -102 6119 68 8 1 chr12 38029128 38030023 -105756432 + L1P LINE L1 2049 2949 -3197 991 194 13 5 chr12 38030160 38032779 -105753676 + ALR/Alpha Satellite centromeric 1 2955 -399 1825 141 3 49 chr12 38032779 38033084 -105753371 + AluY SINE Alu 1 291 -20 991 194 13 5 chr12 38033084 38033487 -105752968 + ALR/Alpha Satellite centromeric 2955 3353 -1 1665 195 7 3 chr12 38033487 38033779 -105752676 + AluSp SINE Alu 1 293 -20 969 175 2 1 chr12 38033795 38034810 -105751645 + ALR/Alpha Satellite centromeric 1 1015 -15 2820 168 23 51 chr12 38034810 38035207 -105751248 - L1P LINE L1 -4369 1777 1406 1968 102 4 4 chr12 38035207 38035473 -105750982 - AluY SINE Alu -45 266 1 2820 168 23 51 chr12 38035473 38035765 -105750690 - L1P LINE L1 -4740 1406 1107 1790 189 0 3 chr12 38035771 38036068 -105750387 - AluSg SINE Alu -14 296 1 674 181 7 7 chr12 38036826 38036964 -105749491 + AluJb SINE Alu 4 141 -171 30 27 0 0 chr12 38036981 38037018 -105749437 + AT_rich Low_complexity Low_complexity 1 37 0 180 111 0 0 chr12 38037082 38037109 -105749346 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 829 255 139 24 chr12 38037109 38037360 -105749095 - AluJb SINE Alu -32 280 1 2111 145 0 0 chr12 38037938 38038241 -105748214 + AluSq SINE Alu 1 303 -10 297 0 0 0 chr12 38038701 38038734 -105747721 + (A)n Simple_repeat Simple_repeat 1 33 0 875 200 6 5 chr12 38038740 38039714 -105746741 + ALR/Alpha Satellite centromeric 1 974 -86 881 200 5 10 chr12 38039741 38043640 -105742815 + ALR/Alpha Satellite centromeric 1 3881 -14 753 215 11 0 chr12 38043656 38044156 -105742299 + ALR/Alpha Satellite centromeric 1 505 -7 987 201 11 4 chr12 38044172 38044568 -105741887 + ALR/Alpha Satellite centromeric 1 393 -3029 2173 86 55 0 chr12 38044568 38044858 -105741597 + AluY SINE Alu 3 308 -3 987 201 11 4 chr12 38044858 38047550 -105738905 + ALR/Alpha Satellite centromeric 393 3401 -21 942 184 0 6 chr12 38047596 38047754 -105738701 + AluJb SINE Alu 137 293 -19 1954 148 3 0 chr12 38047757 38048047 -105738408 + AluY SINE Alu 1 291 -20 4468 177 29 14 chr12 38048061 38049027 -105737428 - L1MC2 LINE L1 -3 6341 5361 193 344 78 23 chr12 38049554 38049682 -105736773 - MIR SINE MIR -116 146 12 1008 157 0 0 chr12 38050335 38050575 -105735880 + (TA)n Simple_repeat Simple_repeat 1 240 0 1567 125 5 0 chr12 38050697 38050913 -105735542 - AluSq SINE Alu -96 217 1 1727 182 7 3 chr12 38051263 38051554 -105734901 + AluSx SINE Alu 1 292 -20 2007 144 13 0 chr12 38052415 38052713 -105733742 + AluSx SINE Alu 1 302 -10 1650 133 0 116 chr12 38052725 38053062 -105733393 + AluJo SINE Alu 5 302 0 2039 135 3 0 chr12 38053070 38053366 -105733089 + AluSq SINE Alu 1 297 -16 1097 113 25 12 chr12 38053486 38053646 -105732809 + AluSx SINE Alu 1 162 -150 1065 176 49 6 chr12 38053766 38056419 -105730036 - GSATX Satellite centromeric 0 2768 1 321 317 67 0 chr12 38056561 38056681 -105729774 + L1MDb LINE L1 598 725 -5684 28 61 0 0 chr12 38056755 38056804 -105729651 + GC_rich Low_complexity Low_complexity 1 49 0 207 167 0 0 chr12 38057039 38057075 -105729380 + C-rich Low_complexity Low_complexity 1 36 0 44 35 0 0 chr12 38057134 38057192 -105729263 + GC_rich Low_complexity Low_complexity 1 58 0 192 200 0 0 chr12 38057200 38057255 -105729200 + C-rich Low_complexity Low_complexity 1 55 0 981 166 4 3 chr12 38057296 38060082 -105726373 + ALR/Alpha Satellite centromeric 1 2788 -28 1611 194 10 3 chr12 38060206 38060495 -105725960 + AluSp SINE Alu 3 293 -20 1038 179 11 7 chr12 38060497 38062769 -105723686 + ALR/Alpha Satellite centromeric 1 2281 -51 4367 76 0 2 chr12 38063175 38063743 -105722712 - MER11D LTR ERVK -330 567 1 230 0 33 0 chr12 38063755 38063785 -105722670 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 979 196 0 16 chr12 38063893 38064077 -105722378 - FRAM SINE Alu 0 176 1 1206 204 50 18 chr12 38064093 38064372 -105722083 + AluJo SINE Alu 1 288 -24 79 66 0 0 chr12 38064495 38064632 -105721823 + GC_rich Low_complexity Low_complexity 1 137 0 286 260 219 8 chr12 38065795 38065918 -105720537 - MER5A DNA MER1_type 0 189 41 1097 159 5 16 chr12 38065925 38066980 -105719475 + ALR/Alpha Satellite centromeric 1 1043 -11 767 216 0 8 chr12 38067114 38067365 -105719090 + ALR/Alpha Satellite centromeric 1 249 -22 10454 126 12 5 chr12 38067368 38069073 -105717382 + L1P LINE L1 1 1717 -4429 9331 87 5 24 chr12 38069251 38069567 -105716888 - L1P4 LINE L1 -418 5743 5423 2344 122 0 0 chr12 38069567 38069870 -105716585 - AluSc SINE Alu -6 303 1 9331 87 5 24 chr12 38069870 38071283 -105715172 - L1P4 LINE L1 -738 5423 4051 1196 164 51 2 chr12 38071387 38072759 -105713696 - GSATX Satellite centromeric -9 1439 1 1149 164 46 2 chr12 38073488 38074649 -105711806 + GSATX Satellite centromeric 1 1211 -19 5188 156 53 11 chr12 38075129 38076245 -105710210 - L1M1 LINE L1 -4311 3254 2092 259 332 97 24 chr12 38076341 38076588 -105709867 - L1M1 LINE L1 -5525 2040 1776 33 25 0 0 chr12 38077099 38077139 -105709316 + GC_rich Low_complexity Low_complexity 1 40 0 225 222 0 0 chr12 38078781 38078826 -105707629 - MLT1H1 LTR MaLR 0 590 546 38 39 0 0 chr12 38078829 38078881 -105707574 + AT_rich Low_complexity Low_complexity 1 52 0 570 304 67 32 chr12 38078923 38079351 -105707104 - MLT1H1 LTR MaLR -120 447 1 103 75 0 0 chr12 38080080 38080213 -105706242 + GC_rich Low_complexity Low_complexity 1 133 0 1078 173 51 4 chr12 38080348 38081349 -105705106 - GSATX Satellite centromeric -8 1047 1 778 184 11 0 chr12 38081881 38082113 -105704342 - ALR/Alpha Satellite centromeric 0 234 1 5379 56 11 4 chr12 38082115 38082835 -105703620 - L1PA4 LINE L1 -1 6154 5430 1092 142 10 24 chr12 38083532 38083824 -105702631 + ALR/Alpha Satellite centromeric 1 296 -382 2229 115 0 47 chr12 38083824 38084146 -105702309 + AluY SINE Alu 1 307 -4 1092 142 10 24 chr12 38084146 38084219 -105702236 + ALR/Alpha Satellite centromeric 296 677 -1 180 111 0 0 chr12 38084220 38084247 -105702208 + (T)n Simple_repeat Simple_repeat 1 27 0 2260 117 0 0 chr12 38084247 38084573 -105701882 - LTR17 LTR ERV1 -454 326 1 38 61 0 0 chr12 38084605 38084654 -105701801 + GC_rich Low_complexity Low_complexity 1 49 0 133 48 0 42 chr12 38084669 38084982 -105701473 + GC_rich Low_complexity Low_complexity 1 300 0 869 206 67 0 chr12 38185031 38185211 -105601244 - MLT2C1 LTR ERVL -56 341 150 2288 176 8 0 chr12 38187090 38187476 -105598979 - MLT1B LTR MaLR -1 389 1 531 141 174 83 chr12 38187820 38187851 -105598604 - MLT1C LTR MaLR -33 434 407 2231 64 41 0 chr12 38187851 38188146 -105598309 + AluY SINE Alu 1 307 -4 531 141 174 83 chr12 38188146 38188235 -105598220 - MLT1C LTR MaLR -60 407 336 585 280 28 14 chr12 38189463 38189674 -105596781 + LTR16C LTR ERVL 267 480 -11 2238 82 30 0 chr12 38190801 38191105 -105595350 - AluSq SINE Alu 0 313 1 200 342 117 8 chr12 38191596 38191716 -105594739 - MIR SINE MIR -46 216 84 590 209 37 8 chr12 38192456 38192590 -105593865 - L1MC1 LINE L1 0 6333 6196 272 238 12 38 chr12 38193363 38193443 -105593012 + MIR SINE MIR 80 157 -105 636 207 7 7 chr12 38193506 38193641 -105592814 - MIR SINE MIR -106 156 22 1803 197 29 18 chr12 38193944 38194330 -105592125 + MLT1B LTR MaLR 1 390 0 528 157 101 82 chr12 38194999 38195158 -105591297 + MLT1C LTR MaLR 17 178 -289 1895 215 45 22 chr12 38195522 38195800 -105590655 - MLT1C LTR MaLR -1 466 196 228 67 0 0 chr12 38195800 38195830 -105590625 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 2136 92 0 3 chr12 38195830 38196114 -105590341 - AluSx SINE Alu -29 283 1 1895 215 45 22 chr12 38196114 38196281 -105590174 - MLT1C LTR MaLR -270 197 10 1996 135 3 0 chr12 38197272 38197568 -105588887 + AluSx SINE Alu 1 297 -15 201 161 0 0 chr12 38197642 38197673 -105588782 + (TG)n Simple_repeat Simple_repeat 1 31 0 236 279 15 0 chr12 38197886 38197954 -105588501 - L1ME3 LINE L1 -2 6160 6092 777 112 0 0 chr12 38198017 38198124 -105588331 + AluSg/x SINE Alu 198 304 -8 433 120 13 13 chr12 38198926 38199001 -105587454 - L1MC2 LINE L1 -8 6336 6262 2119 125 3 3 chr12 38200055 38200366 -105586089 - AluSx SINE Alu -1 311 1 213 281 35 61 chr12 38200664 38200778 -105585677 - MER5B DNA MER1_type -62 116 6 433 293 19 25 chr12 38201276 38201433 -105585022 + Zaphod DNA AcHobo 275 430 -3601 1886 127 21 0 chr12 38202222 38202505 -105583950 - AluSx SINE Alu -10 302 14 1790 164 26 78 chr12 38204186 38204245 -105582210 - MLT1A1 LTR MaLR 0 365 304 2155 87 0 3 chr12 38204245 38204533 -105581922 + AluSq SINE Alu 22 308 -5 1790 164 26 78 chr12 38204533 38204858 -105581597 - MLT1A1 LTR MaLR -61 304 1 1204 114 59 25 chr12 38205326 38205528 -105580927 - THE1B LTR MaLR 0 364 156 2125 118 7 0 chr12 38205529 38205826 -105580629 + AluSx SINE Alu 1 299 -13 562 80 68 23 chr12 38205834 38205922 -105580533 - THE1B LTR MaLR -272 92 1 2028 117 0 0 chr12 38206880 38207242 -105579213 - AluSx SINE Alu 0 362 1 591 137 0 63 chr12 38209677 38209867 -105576588 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 412 18 35 0 chr12 38209889 38209946 -105576509 + (CTAAT)n Simple_repeat Simple_repeat 5 63 0 241 67 22 22 chr12 38209956 38210001 -105576454 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 762 182 30 0 chr12 38210001 38210133 -105576322 - FRAM SINE Alu -28 148 13 2473 234 89 43 chr12 38210133 38210928 -105575527 - MER97a DNA MER1_type? -54 840 9 1427 48 5 21 chr12 38210976 38211201 -105575254 + AluY SINE Alu 99 320 0 1676 166 24 7 chr12 38211217 38211513 -105574942 + AluJb SINE Alu 1 301 -11 2263 86 3 0 chr12 38211513 38211804 -105574651 + AluSp SINE Alu 1 292 -21 424 192 19 0 chr12 38211812 38211916 -105574539 + (CA)n Simple_repeat Simple_repeat 2 107 0 2334 79 7 0 chr12 38211918 38212223 -105574232 + AluY SINE Alu 1 307 -4 321 89 0 0 chr12 38212227 38212272 -105574183 + (CA)n Simple_repeat Simple_repeat 2 46 0 228 385 18 0 chr12 38213281 38213390 -105573065 + MLT1K LTR MaLR 188 298 -290 249 386 47 8 chr12 38213528 38213655 -105572800 - L2 LINE L2 -4 3268 3137 234 247 39 0 chr12 38215127 38215190 -105571265 - MIR SINE MIR -84 124 50 1628 194 0 29 chr12 38216676 38216985 -105569470 - AluJo SINE Alu -12 300 1 605 234 0 0 chr12 38217080 38217187 -105569268 + FLAM_C SINE Alu 10 116 -27 417 54 0 0 chr12 38217187 38217243 -105569212 + (TAA)n Simple_repeat Simple_repeat 2 57 0 1321 161 107 43 chr12 38217370 38217650 -105568805 - AluJo SINE Alu -14 298 1 263 282 13 13 chr12 38217802 38217880 -105568575 + GA-rich Low_complexity Low_complexity 2 79 0 238 278 124 53 chr12 38218667 38218836 -105567619 + MIR SINE MIR 7 187 -75 708 260 178 10 chr12 38219842 38220134 -105566321 + MER20B DNA MER1_type 68 408 -375 2408 85 0 0 chr12 38220353 38220659 -105565796 - AluSq SINE Alu -7 306 1 329 264 32 16 chr12 38220662 38220787 -105565668 + MER20B DNA MER1_type 654 780 -3 273 89 0 0 chr12 38222316 38222361 -105564094 + (CA)n Simple_repeat Simple_repeat 1 45 0 23 0 0 0 chr12 38222996 38223019 -105563436 + AT_rich Low_complexity Low_complexity 1 23 0 2245 108 0 6 chr12 38224171 38224485 -105561970 + AluSx SINE Alu 1 312 0 202 303 220 0 chr12 38224533 38224642 -105561813 - L2 LINE L2 -3 3269 3137 1248 245 97 30 chr12 38224671 38225104 -105561351 + MLT1C LTR MaLR 6 467 0 329 302 67 13 chr12 38225190 38225339 -105561116 + MER5A DNA MER1_type 18 174 -15 1044 90 0 0 chr12 38225860 38225993 -105560462 + AluSq/x SINE Alu 1 133 -180 1579 106 0 103 chr12 38225997 38226156 -105560299 + AluSc SINE Alu 1 120 -189 2136 108 10 0 chr12 38226156 38226453 -105560002 + AluSp SINE Alu 1 300 -13 1579 106 0 103 chr12 38226453 38226575 -105559880 + AluSc SINE Alu 120 253 -56 691 376 19 24 chr12 38326825 38327415 -105459040 + L1PA13 LINE L1 788 1374 -6200 286 260 21 21 chr12 38327565 38327661 -105458794 + L1PA13 LINE L1 2085 2180 -5401 461 248 0 0 chr12 38327923 38328036 -105458419 + FRAM SINE Alu 63 175 -1 332 331 36 26 chr12 38328049 38328204 -105458251 + MIR3 SINE MIR 31 187 -21 333 371 66 65 chr12 38328293 38328720 -105457735 - L2 LINE L2 -49 3223 2796 2205 83 33 3 chr12 38328740 38329040 -105457415 - AluY SINE Alu -2 309 1 8432 38 27 0 chr12 38329297 38330390 -105456065 + L1P LINE L1 3589 4711 -1435 23 68 0 0 chr12 38330865 38330909 -105455546 + AT_rich Low_complexity Low_complexity 1 44 0 2035 167 96 15 chr12 38330994 38331402 -105455053 - MER65A LTR ERV1 -4 441 1 241 309 31 0 chr12 38331402 38331499 -105454956 - MER81 DNA DNA -6 108 9 1787 150 34 50 chr12 38331499 38331880 -105454575 + THE1C LTR MaLR 1 375 0 682 241 7 28 chr12 38331947 38332092 -105454363 + MER5A DNA MER1_type 1 142 -47 2230 25 2 0 chr12 38332696 38333122 -105453333 - L1P1 LINE L1 -630 5525 5099 10231 43 12 3 chr12 38333122 38335158 -105451297 + L1PA5 LINE L1 4106 6154 0 349 303 147 52 chr12 38335482 38335713 -105450742 + MIR SINE MIR 10 262 0 204 40 0 0 chr12 38336643 38336668 -105449787 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 198 342 59 53 chr12 38337748 38337900 -105448555 - MIR3 SINE MIR -3 205 53 206 242 94 30 chr12 38338054 38338155 -105448300 + MER5B DNA MER1_type 12 105 -73 232 224 47 24 chr12 38338642 38338727 -105447728 + MLT1I LTR MaLR 306 392 -17 21 36 0 0 chr12 38339066 38339094 -105447361 + AT_rich Low_complexity Low_complexity 1 28 0 1599 220 7 0 chr12 38340078 38340387 -105446068 + AluJo SINE Alu 1 311 -1 402 355 14 0 chr12 38340414 38340555 -105445900 + MIR3 SINE MIR 45 187 -21 295 374 42 60 chr12 38340641 38341071 -105445384 - L2 LINE L2 -46 3226 2796 2393 53 33 3 chr12 38341091 38341391 -105445064 - AluY SINE Alu -2 309 1 785 272 7 22 chr12 38341730 38342006 -105444449 - L1PBa LINE L1 -6586 277 6 532 257 106 41 chr12 38342031 38342166 -105444289 + L2 LINE L2 3005 3130 -183 2063 134 39 3 chr12 38342166 38342501 -105443954 + MER7A DNA MER2_type 1 345 -1 532 257 106 41 chr12 38342501 38342610 -105443845 + L2 LINE L2 3130 3265 -48 326 104 42 0 chr12 38343969 38344017 -105442438 + MIR SINE MIR 56 105 -157 22 0 0 0 chr12 38344353 38344375 -105442080 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr12 38345655 38345684 -105440771 + AT_rich Low_complexity Low_complexity 1 29 0 301 307 136 7 chr12 38346199 38346339 -105440116 + L2 LINE L2 2699 2856 -458 208 336 97 0 chr12 38346385 38346498 -105439957 + L2 LINE L2 2924 3047 -225 860 280 25 13 chr12 38346649 38346885 -105439570 - MIR SINE MIR -10 252 14 324 313 170 9 chr12 38346903 38347015 -105439440 + L2 LINE L2 3134 3263 -9 364 314 124 29 chr12 38347841 38348051 -105438404 - MIR SINE MIR -32 230 1 4706 209 16 3 chr12 38349203 38350348 -105436107 - L1 LINE L1 -1862 4284 3126 7659 129 31 8 chr12 38350356 38351774 -105434681 - L1PBa LINE L1 -4081 2782 1332 2274 165 110 12 chr12 38351791 38352300 -105434155 - L1PBa LINE L1 -5700 1163 605 633 133 8 23 chr12 38352332 38352460 -105433995 - LTR14B LTR ERVK 0 608 483 1336 173 32 7 chr12 38352715 38352992 -105433463 - L1P4 LINE L1 -493 5673 5390 359 176 0 0 chr12 38352996 38353064 -105433391 + L1P4 LINE L1 5304 5371 -795 24268 78 171 1 chr12 38353631 38357501 -105428954 - L1P LINE L1 -1575 4571 45 24 53 0 0 chr12 38358189 38358227 -105428228 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr12 38358416 38358437 -105428018 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr12 38358563 38358597 -105427858 + AT_rich Low_complexity Low_complexity 1 34 0 1937 158 38 97 chr12 38358597 38359122 -105427333 + L1PA16 LINE L1 5652 6145 -21 13973 242 82 21 chr12 38359133 38362034 -105424421 + L1M1 LINE L1 17 2739 -4826 1717 29 0 5 chr12 38362034 38362244 -105424211 + L1PA3 LINE L1 5944 6152 -3 13973 242 82 21 chr12 38362244 38364292 -105422163 + L1M1 LINE L1 2739 5320 -2245 2100 140 7 3 chr12 38364292 38364592 -105421863 + AluSx SINE Alu 1 304 -8 228 35 0 0 chr12 38364592 38364621 -105421834 + (CACAA)n Simple_repeat Simple_repeat 4 32 0 13973 242 82 21 chr12 38364628 38364989 -105421466 + L1M1 LINE L1 5320 5657 -1908 1984 196 38 17 chr12 38365004 38365423 -105421032 + MSTA LTR MaLR 1 428 0 6116 213 110 58 chr12 38365425 38366925 -105419530 + MSTA-int LTR MaLR 3 1651 0 1551 239 62 10 chr12 38366927 38367332 -105419123 + MSTA LTR MaLR 3 428 0 3395 217 24 20 chr12 38367332 38368223 -105418232 + L1M1 LINE L1 5668 6561 -1004 3437 73 5 2 chr12 38368323 38368764 -105417691 + SVA Other Other 941 1382 -4 651 250 158 10 chr12 38369449 38369645 -105416810 + MIR SINE MIR 6 230 -32 270 364 120 26 chr12 38370537 38370845 -105415610 - L3 LINE CR1 -248 1329 993 534 319 91 26 chr12 38370884 38371116 -105415339 + MIR SINE MIR 8 254 -8 619 153 29 58 chr12 38371254 38371391 -105415064 + FLAM_C SINE Alu 6 138 -5 329 206 11 0 chr12 38371392 38371484 -105414971 + (TA)n Simple_repeat Simple_repeat 2 94 0 24 67 0 0 chr12 38371940 38371985 -105414470 + AT_rich Low_complexity Low_complexity 1 45 0 1217 93 137 10 chr12 38372186 38372285 -105414170 + MER30 DNA MER1_type 1 86 -144 395 0 0 39 chr12 38372285 38372337 -105414118 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 1217 93 137 10 chr12 38372337 38372441 -105414014 + MER30 DNA MER1_type 86 230 0 2193 108 3 3 chr12 38374174 38374480 -105411975 + AluSq SINE Alu 1 306 -7 3339 163 18 20 chr12 38375361 38376019 -105410436 + L1MA7 LINE L1 5619 6275 -16 23 0 0 0 chr12 38376019 38376042 -105410413 + AT_rich Low_complexity Low_complexity 1 23 0 1112 217 91 78 chr12 38376094 38376555 -105409900 + MLT1C LTR MaLR 1 467 0 21 36 0 0 chr12 38377011 38377039 -105409416 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr12 38377494 38377530 -105408925 + AT_rich Low_complexity Low_complexity 1 36 0 963 282 32 66 chr12 38378120 38378623 -105407832 + L1MCc LINE L1 651 1136 -5287 342 0 0 0 chr12 38378624 38378662 -105407793 + (TG)n Simple_repeat Simple_repeat 2 39 0 918 280 47 9 chr12 38378674 38379017 -105407438 - L1ME LINE L1 -498 5672 5317 411 194 0 11 chr12 38379019 38379112 -105407343 + L1PA13 LINE L1 6065 6156 -7 1037 225 84 3 chr12 38379318 38379602 -105406853 + MER5C DNA MER1_type 12 318 -6 28 0 0 0 chr12 38379713 38379741 -105406714 + AT_rich Low_complexity Low_complexity 1 28 0 183 204 0 0 chr12 38380209 38380253 -105406202 + T-rich Low_complexity Low_complexity 1 44 0 307 145 16 16 chr12 38380436 38380498 -105405957 - L1ME1 LINE L1 -3 6163 6102 48 53 0 0 chr12 38380884 38380960 -105405495 + AT_rich Low_complexity Low_complexity 1 76 0 293 335 50 41 chr12 38380986 38381207 -105405248 + MLT1I LTR MaLR 132 354 -55 26 0 0 0 chr12 38382691 38382717 -105403738 + AT_rich Low_complexity Low_complexity 1 26 0 1273 39 0 0 chr12 38383132 38383288 -105403167 - L1PA4 LINE L1 -4 6151 5996 227 267 256 0 chr12 38384485 38384571 -105401884 - L2 LINE L2 -1 3312 3205 286 258 61 61 chr12 38384654 38384766 -105401689 + MER3 DNA MER1_type 12 126 -83 1478 121 5 0 chr12 38384766 38384973 -105401482 - AluSg/x SINE Alu -21 289 82 286 258 61 61 chr12 38384973 38385058 -105401397 + MER3 DNA MER1_type 125 209 0 1566 179 36 4 chr12 38385264 38385538 -105400917 + AluJb SINE Alu 1 283 -29 258 81 0 0 chr12 38385545 38385582 -105400873 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr12 38385752 38385773 -105400682 + AT_rich Low_complexity Low_complexity 1 21 0 320 366 91 11 chr12 38385861 38386047 -105400408 - MIR SINE MIR -32 230 30 1722 229 56 0 chr12 38386058 38386434 -105400021 + MLT1D LTR MaLR 1 495 -122 259 308 67 29 chr12 38387387 38387491 -105398964 - MIR SINE MIR -64 144 49 280 269 173 0 chr12 38387919 38388023 -105398432 - MIR SINE MIR -73 189 68 4297 275 76 37 chr12 38388225 38391113 -105395342 - L1PA15-16 LINE L1 -2046 5538 2529 2096 151 8 30 chr12 38391121 38391493 -105394962 + THE1B LTR MaLR 1 364 0 656 113 28 0 chr12 38391493 38391599 -105394856 + THE1B-int LTR MaLR 1 109 -1471 1346 193 14 41 chr12 38391699 38391989 -105394466 + THE1B LTR MaLR 83 364 0 10960 99 12 38 chr12 38391989 38393609 -105392846 + THE1B-int LTR MaLR 1 1578 -2 2134 134 8 52 chr12 38393611 38393992 -105392463 + THE1B LTR MaLR 1 364 0 818 311 6 22 chr12 38393996 38394318 -105392137 - L1PA15-16 LINE L1 -5074 2507 2191 363 238 30 20 chr12 38394562 38394663 -105391792 - L1PA15-16 LINE L1 -5395 2186 2085 1025 368 17 20 chr12 38394813 38395402 -105391053 - L1PA15-16 LINE L1 -6200 1374 788 442 228 0 0 chr12 38395871 38395963 -105390492 + L2 LINE L2 3222 3313 0 329 363 51 25 chr12 38396061 38396218 -105390237 - MIR3 SINE MIR -28 180 20 23 0 0 0 chr12 38399099 38399122 -105387333 + AT_rich Low_complexity Low_complexity 1 23 0 374 367 67 24 chr12 38399413 38399784 -105386671 - L2 LINE L2 -679 2635 2249 236 256 267 0 chr12 38400323 38400413 -105386042 + MIR SINE MIR 28 141 -67 658 258 16 52 chr12 38400729 38400923 -105385532 + MER5A DNA MER1_type 3 189 0 444 242 189 8 chr12 38400936 38401068 -105385387 + MER5A DNA MER1_type 28 183 -6 419 250 0 0 chr12 38401071 38401147 -105385308 + AluJ/FLAM SINE Alu 3 78 -234 676 247 16 52 chr12 38401593 38401787 -105384668 + MER5A DNA MER1_type 3 189 0 465 235 189 8 chr12 38401800 38401932 -105384523 + MER5A DNA MER1_type 28 183 -6 1650 209 0 3 chr12 38401935 38402217 -105384238 + AluJb SINE Alu 3 283 -29 24 0 0 0 chr12 38403440 38403464 -105382991 + AT_rich Low_complexity Low_complexity 1 24 0 276 355 73 8 chr12 38404775 38404899 -105381556 + MIR SINE MIR 20 151 -57 487 292 152 8 chr12 38407095 38407359 -105379096 - L2 LINE L2 0 3313 3012 707 330 171 31 chr12 38407427 38407946 -105378509 - L2 LINE L2 -376 2938 2347 236 336 9 0 chr12 38411748 38411861 -105374594 + (CA)n Simple_repeat Simple_repeat 2 115 0 32435 51 7 3 chr12 38412618 38418619 -105367836 + L1PA4 LINE L1 121 6141 -14 285 281 117 0 chr12 38419199 38419327 -105367128 - MIR SINE MIR 0 262 120 189 0 0 0 chr12 38420549 38420570 -105365885 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 28 71 0 0 chr12 38421353 38421409 -105365046 + AT_rich Low_complexity Low_complexity 1 56 0 560 189 76 185 chr12 38421601 38421953 -105364502 - LTR28 LTR ERV1 -101 906 1 726 308 161 9 chr12 38423184 38423525 -105362930 - MLT1J LTR MaLR -30 481 89 22 0 0 0 chr12 38423642 38423664 -105362791 + AT_rich Low_complexity Low_complexity 1 22 0 1335 249 71 51 chr12 38424400 38424890 -105361565 - MLT1D LTR MaLR 0 505 6 1410 195 104 36 chr12 38427102 38427511 -105358944 - MSTD LTR MaLR 0 396 1 1275 223 42 72 chr12 38427738 38428124 -105358331 - MLT1A2 LTR MaLR 0 374 1 424 260 75 55 chr12 38429595 38429795 -105356660 + L2 LINE L2 3109 3312 -1 1873 247 67 49 chr12 38430036 38430651 -105355804 - MLT1E2 LTR MaLR 0 626 1 23 33 0 0 chr12 38430734 38430764 -105355691 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr12 38431123 38431159 -105355296 + AT_rich Low_complexity Low_complexity 1 36 0 1871 270 107 9 chr12 38432164 38432924 -105353531 - L1ME3A LINE L1 -31 6139 5306 1992 211 43 64 chr12 38433591 38434105 -105352350 + MLT2B3 LTR ERVL 1 413 -40 223 191 29 0 chr12 38434105 38434173 -105352282 + (TA)n Simple_repeat Simple_repeat 2 71 0 358 89 0 78 chr12 38434186 38434279 -105352176 + MLT2B3 LTR ERVL 441 554 0 932 263 93 17 chr12 38434456 38434756 -105351699 + LTR50 LTR ERVL 1 323 -472 851 259 99 14 chr12 38434798 38435150 -105351305 + LTR50 LTR ERVL 414 795 0 335 113 14 0 chr12 38436548 38436619 -105349836 + (TG)n Simple_repeat Simple_repeat 1 72 0 316 220 0 0 chr12 38436632 38436682 -105349773 - MER75 DNA T2_type -443 71 22 550 268 64 0 chr12 38436818 38436975 -105349480 + MIR SINE MIR 94 260 -2 21 0 0 0 chr12 38438353 38438374 -105348081 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr12 38438553 38438589 -105347866 + AT_rich Low_complexity Low_complexity 1 36 0 3255 118 12 16 chr12 38438589 38439105 -105347350 - MER75 DNA T2_type 0 514 1 2475 194 38 19 chr12 38439310 38439836 -105346619 - MER89 LTR ERV1 -23 536 1 391 270 171 25 chr12 38440447 38440721 -105345734 + L2 LINE L2 1938 2251 -1063 2079 189 50 23 chr12 38441792 38442232 -105344223 + MSTB2 LTR MaLR 1 452 -5 1094 67 0 0 chr12 38442400 38442534 -105343921 + AluY SINE Alu 168 301 -10 2035 141 30 49 chr12 38443062 38443432 -105343023 + THE1B LTR MaLR 2 364 0 840 269 58 10 chr12 38443509 38443821 -105342634 - MER46C DNA MER2_type 0 338 12 523 275 36 7 chr12 38443825 38443963 -105342492 - MIR SINE MIR -120 142 1 271 352 116 37 chr12 38444083 38444438 -105342017 - L3 LINE CR1 -199 1378 996 2132 185 42 5 chr12 38444450 38444856 -105341599 - MSTA LTR MaLR -7 421 1 201 394 0 0 chr12 38444864 38444935 -105341520 - L3 LINE CR1 -597 980 910 1367 204 0 29 chr12 38444952 38445232 -105341223 + L1M3e LINE L1 1 272 -6758 2259 242 82 49 chr12 38445232 38447015 -105339440 + L1M3e LINE L1 1028 2894 -4213 1857 110 4 4 chr12 38447009 38447281 -105339174 - THE1B-int LTR MaLR -1308 272 1 * 2406 79 54 23 chr12 38447281 38447634 -105338821 - THE1B LTR MaLR 0 364 1 557 156 11 6 chr12 38447800 38447900 -105338555 + MER5A DNA MER1_type 82 189 0 4623 142 3 0 chr12 38448008 38448713 -105337742 + L1P LINE L1 3 709 -5437 3443 119 2 6 chr12 38449230 38449744 -105336711 - MER75 DNA T2_type -2 512 1 327 266 180 30 chr12 38449865 38450000 -105336455 - MIR3 SINE MIR -14 194 45 6098 194 26 27 chr12 38450124 38450174 -105336281 - L1PA16 LINE L1 -9 6157 6108 1468 224 0 19 chr12 38450174 38450482 -105335973 - AluJb SINE Alu -8 304 3 6098 194 26 27 chr12 38450482 38452252 -105334203 - L1PA16 LINE L1 -58 6108 4338 1246 230 10 32 chr12 38452252 38452561 -105333894 + AluJb SINE Alu 1 302 -10 6098 194 26 27 chr12 38452561 38453203 -105333252 - L1PA16 LINE L1 -1828 4338 3697 1809 61 4 0 chr12 38453276 38453507 -105332948 - MER75 DNA T2_type -2 512 281 1268 204 54 36 chr12 38453523 38453857 -105332598 - L1PA16 LINE L1 -2486 3660 3321 232 279 25 13 chr12 38454303 38454382 -105332073 + LTR33A LTR ERVL 444 523 0 838 303 39 21 chr12 38455349 38455679 -105330776 + LTR16B LTR ERVL 125 460 -4 894 338 43 36 chr12 38455719 38456461 -105329994 + HERV16 LTR ERVL 61 834 -4162 5052 75 11 40 chr12 38456461 38457169 -105329286 + LTR12 LTR ERV1 1 688 0 894 338 43 36 chr12 38457169 38457395 -105329060 + HERV16 LTR ERVL 834 1057 -3939 272 67 0 0 chr12 38457687 38457732 -105328723 + AluSc SINE Alu 255 299 0 3170 214 124 34 chr12 38457944 38458920 -105327535 + L1M1 LINE L1 1 1064 -6145 * 7770 160 34 36 chr12 38458913 38460912 -105325543 + L1M1 LINE L1 4678 6680 -685 1038 224 28 86 chr12 38461346 38461743 -105324712 + MLT1A2 LTR MaLR 1 374 0 782 214 7 87 chr12 38462074 38462371 -105324084 + MLT1B LTR MaLR 104 386 0 551 272 5 5 chr12 38462861 38463045 -105323410 + L1MC/D LINE L1 5188 5371 -775 * 6658 91 8 0 chr12 38463041 38463964 -105322491 - L1PA7 LINE L1 -1116 5030 4101 6407 74 17 6 chr12 38463966 38465055 -105321400 + L1PA7 LINE L1 5041 6141 -13 534 77 0 0 chr12 38465059 38465137 -105321318 + L1MC/D LINE L1 5354 5431 -902 835 288 64 47 chr12 38465348 38465817 -105320638 - LTR33 LTR ERVL -3 518 42 2224 111 0 3 chr12 38465939 38466236 -105320219 + AluY SINE Alu 1 296 -15 619 190 0 11 chr12 38466462 38466641 -105319814 + GA-rich Low_complexity Low_complexity 1 177 0 27 0 0 0 chr12 38467704 38467731 -105318724 + AT_rich Low_complexity Low_complexity 1 27 0 236 344 38 75 chr12 38468340 38468526 -105317929 - MIR3 SINE MIR -14 194 16 339 25 0 0 chr12 38468973 38469013 -105317442 + (CA)n Simple_repeat Simple_repeat 2 41 0 297 210 48 0 chr12 38469013 38469075 -105317380 - HERVL68 LTR ERVL -338 2699 2635 634 235 170 26 chr12 38469148 38469378 -105317077 - HERVL68 LTR ERVL -484 2553 2291 269 285 139 32 chr12 38469893 38470051 -105316404 - MIR SINE MIR -40 222 48 229 332 35 73 chr12 38470942 38471201 -105315254 - MIR SINE MIR 0 262 14 663 244 99 23 chr12 38471340 38471561 -105314894 + L1ME1 LINE L1 36 273 -6123 1335 257 82 6 chr12 38471600 38472098 -105314357 + L1ME1 LINE L1 4707 5242 -973 595 116 0 0 chr12 38472110 38472196 -105314259 - HY3 scRNA scRNA -3 98 13 2630 231 67 38 chr12 38472235 38473174 -105313281 + L1ME1 LINE L1 5284 6231 -4 7606 23 5 0 chr12 38473199 38474068 -105312387 - L1P LINE L1 -1168 4978 4106 * 7615 32 1 0 chr12 38474067 38475151 -105311304 + L1PA3 LINE L1 5098 6182 0 21 57 0 0 chr12 38475604 38475639 -105310816 + AT_rich Low_complexity Low_complexity 1 35 0 1655 209 69 3 chr12 38476783 38476992 -105309463 - MLT1B LTR MaLR 0 390 147 1341 173 85 35 chr12 38476992 38477167 -105309288 - AluJo SINE Alu -15 297 101 441 0 0 0 chr12 38477167 38477216 -105309239 + (TG)n Simple_repeat Simple_repeat 2 50 0 1341 173 85 35 chr12 38477216 38477323 -105309132 - AluJo SINE Alu -211 101 1 1655 209 69 3 chr12 38477323 38477461 -105308994 - MLT1B LTR MaLR -243 147 20 1148 137 19 16 chr12 38477461 38477706 -105308749 + THE1C LTR MaLR 1 361 -14 372 183 15 131 chr12 38477806 38477943 -105308512 + MIR SINE MIR 126 246 -16 495 169 11 22 chr12 38479515 38479604 -105306851 + MLT1H LTR MaLR 411 498 -51 21 0 0 0 chr12 38480372 38480393 -105306062 + AT_rich Low_complexity Low_complexity 1 21 0 50 95 0 0 chr12 38480604 38480752 -105305703 + AT_rich Low_complexity Low_complexity 1 148 0 612 82 0 0 chr12 38480858 38480943 -105305512 + Alu SINE Alu 225 309 -3 233 243 95 0 chr12 38480948 38481022 -105305433 - L1MC5 LINE L1 -404 7557 7477 23 0 0 0 chr12 38481167 38481190 -105305265 + AT_rich Low_complexity Low_complexity 1 23 0 294 336 143 0 chr12 38481228 38481347 -105305108 - L2 LINE L2 0 3272 3137 360 225 12 25 chr12 38482606 38482686 -105303769 - MIR SINE MIR -107 101 23 2417 57 0 27 chr12 38483799 38484100 -105302355 - AluY SINE Alu -18 293 1 2277 89 7 0 chr12 38484114 38484406 -105302049 - AluSp SINE Alu -19 294 1 366 23 0 0 chr12 38485399 38485442 -105301013 + (CA)n Simple_repeat Simple_repeat 2 44 0 310 283 22 43 chr12 38485816 38485954 -105300501 + L2 LINE L2 417 551 -2763 486 297 40 7 chr12 38485975 38486180 -105300275 + MIR SINE MIR 2 254 -8 2632 126 3 8 chr12 38486554 38486920 -105299535 + THE1B LTR MaLR 1 364 0 362 322 89 20 chr12 38487085 38487474 -105298981 + L1ME LINE L1 16 468 -5602 10258 44 2 128 chr12 38487883 38489455 -105297000 + SVA Other Other 9 1382 -4 985 292 19 39 chr12 38489817 38490228 -105296227 + L1 LINE L1 4857 5259 -887 1656 157 87 31 chr12 38490234 38490554 -105295901 + THE1C LTR MaLR 1 365 -63 2126 97 7 4 chr12 38490554 38490833 -105295622 + AluSg1 SINE Alu 2 281 -28 1656 157 87 31 chr12 38490833 38490901 -105295554 + THE1C LTR MaLR 365 428 0 663 100 118 9 chr12 38490929 38491039 -105295416 + L1MA2 LINE L1 6178 6299 -5 22 0 0 0 chr12 38491039 38491061 -105295394 + AT_rich Low_complexity Low_complexity 1 22 0 499 174 207 0 chr12 38491065 38491186 -105295269 - MER4B LTR ERV1 -462 148 3 1870 149 3 0 chr12 38491516 38491798 -105294657 + AluSx SINE Alu 3 285 -27 30 27 0 0 chr12 38491799 38491836 -105294619 + AT_rich Low_complexity Low_complexity 1 37 0 686 316 0 0 chr12 38492442 38492616 -105293839 + MER41D LTR ERV1 384 557 0 11798 303 50 31 chr12 38493561 38495517 -105290938 + PRIMA41-int LTR ERV1 1269 3187 -4569 2375 76 0 35 chr12 38495517 38495833 -105290622 - AluY SINE Alu -6 305 1 11798 303 50 31 chr12 38495833 38497090 -105289365 + PRIMA41-int LTR ERV1 3187 4419 -3337 2713 107 5 35 chr12 38497090 38497299 -105289156 - THE1B LTR MaLR 0 364 168 1925 115 4 0 chr12 38497299 38497583 -105288872 + AluSx SINE Alu 23 307 0 2713 107 5 35 chr12 38497583 38497747 -105288708 - THE1B LTR MaLR -196 168 1 11798 303 50 31 chr12 38497747 38499312 -105287143 + PRIMA41-int LTR ERV1 4419 6138 -1618 213 196 0 0 chr12 38499620 38499676 -105286779 + G-rich Low_complexity Low_complexity 4 59 0 351 297 22 22 chr12 38602676 38602814 -105183641 + L1ME1 LINE L1 138 275 -6121 941 163 0 0 chr12 38602815 38602962 -105183493 + HERVL LTR ERVL 1499 1645 -4119 839 243 24 67 chr12 38602963 38603336 -105183119 - MER57A LTR ERV1 -1 402 67 1130 196 100 0 chr12 38603406 38603626 -105182829 + HERVL LTR ERVL 3671 3912 -1742 3062 223 43 51 chr12 38603626 38604121 -105182334 + L1ME1 LINE L1 4249 4747 -1488 2181 102 0 3 chr12 38604121 38604415 -105182040 - AluSg1 SINE Alu -16 293 1 3062 223 43 51 chr12 38604415 38605741 -105180714 + L1ME1 LINE L1 4747 6043 -192 1820 304 48 41 chr12 38605840 38606738 -105179717 + HAL1 LINE L1 14 917 -1590 295 306 60 82 chr12 38606859 38607140 -105179315 - HAL1 LINE L1 -2125 382 108 732 288 35 11 chr12 38607459 38607698 -105178757 - MIR SINE MIR -9 253 13 255 282 5 146 chr12 38607698 38607904 -105178551 - MER5B DNA MER1_type 0 178 2 224 365 156 12 chr12 38608136 38608303 -105178152 + MIR SINE MIR 28 218 -44 894 239 109 10 chr12 38608419 38608712 -105177743 - HsTC2 DNA Tc2 -30 1868 1547 210 125 14 83 chr12 38608714 38608786 -105177669 + (TTAA)n Simple_repeat Simple_repeat 2 68 0 328 313 18 0 chr12 38608896 38609008 -105177447 - HsTC2 DNA Tc2 -1781 117 4 2656 153 2 2 chr12 38610543 38610969 -105175486 - MSTC LTR MaLR -2 426 1 204 327 0 0 chr12 38611121 38611176 -105175279 - MIR SINE MIR -138 70 16 2073 105 7 7 chr12 38611228 38611544 -105174911 - AluSp SINE Alu 0 316 1 810 168 0 29 chr12 38612172 38612309 -105174146 - FLAM_C SINE Alu 0 133 1 4253 16 2 0 chr12 38612500 38612991 -105173464 - L1PA2 LINE L1 -1 6154 5663 739 249 0 17 chr12 38614491 38614664 -105171791 + MER31B LTR ERV1 1 170 -296 21427 121 11 10 chr12 38614664 38618573 -105167882 + L1PA8A LINE L1 1894 5802 -329 24 0 0 0 chr12 38618752 38618776 -105167679 + AT_rich Low_complexity Low_complexity 1 24 0 1181 298 177 33 chr12 38619192 38619866 -105166589 - L3 LINE CR1 -4 1573 803 737 271 157 34 chr12 38619886 38620299 -105166156 + LTR16B LTR ERVL 1 464 0 293 352 41 25 chr12 38620303 38620499 -105165956 + HERV16 LTR ERVL 5 203 -4793 2772 319 78 31 chr12 38620571 38621681 -105164774 + HERV16 LTR ERVL 506 1562 -3535 207 0 0 0 chr12 38621681 38621704 -105164751 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2772 319 78 31 chr12 38621704 38623086 -105163369 + HERV16 LTR ERVL 1562 3197 -1900 259 298 35 48 chr12 38623140 38623368 -105163087 + HERV16 LTR ERVL 3569 3793 -1203 1244 220 51 71 chr12 38623370 38623724 -105162731 + MLT1A1 LTR MaLR 7 353 -12 238 222 14 42 chr12 38624011 38624083 -105162372 - HAL1b LINE L1 -925 423 354 2705 26 0 0 chr12 38624092 38624398 -105162057 + AluYa5 SINE Alu 1 306 -5 21 36 0 0 chr12 38624569 38624597 -105161858 + AT_rich Low_complexity Low_complexity 1 28 0 492 341 40 14 chr12 38625141 38625364 -105161091 - MLT1J LTR MaLR -262 249 21 200 194 48 0 chr12 38626307 38626369 -105160086 + (CTATT)n Simple_repeat Simple_repeat 4 68 0 519 299 66 49 chr12 38628010 38628254 -105158201 + MIR SINE MIR 15 262 0 23 0 0 0 chr12 38629350 38629373 -105157082 + AT_rich Low_complexity Low_complexity 1 23 0 2171 91 30 10 chr12 38629547 38629845 -105156610 - AluSg SINE Alu -6 304 1 28 0 0 0 chr12 38630932 38630960 -105155495 + AT_rich Low_complexity Low_complexity 1 28 0 377 339 61 6 chr12 38631928 38632108 -105154347 - L2 LINE L2 0 3313 3124 1650 286 80 10 chr12 38632113 38632712 -105153743 + L2 LINE L2 1430 2070 -1244 1156 294 51 40 chr12 38633336 38633789 -105152666 - MLT1J LTR MaLR -35 476 19 261 221 0 39 chr12 38633900 38633977 -105152478 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 267 225 50 0 chr12 38635042 38635162 -105151293 + (TA)n Simple_repeat Simple_repeat 1 126 0 3886 189 139 22 chr12 38636093 38637079 -105149376 + L1MB1 LINE L1 4134 5234 -912 1265 171 60 12 chr12 38637180 38637432 -105149023 + L1MB1 LINE L1 5748 6011 -157 2297 109 12 9 chr12 38637434 38637773 -105148682 + THE1A LTR MaLR 1 340 -15 814 133 67 0 chr12 38637776 38637926 -105148529 + L1MB1 LINE L1 6008 6167 -1 21 36 0 0 chr12 38637926 38637954 -105148501 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr12 38639182 38639221 -105147234 + (TG)n Simple_repeat Simple_repeat 2 40 0 802 153 107 0 chr12 38640080 38640230 -105146225 + L1M4c LINE L1 1599 1764 -4620 378 0 0 0 chr12 38640326 38640368 -105146087 + (TG)n Simple_repeat Simple_repeat 2 43 0 232 268 0 28 chr12 38640369 38640440 -105146015 + GA-rich Low_complexity Low_complexity 1 69 0 518 132 0 11 chr12 38640716 38640807 -105145648 + L1M4c LINE L1 1748 1837 -4547 225 0 0 0 chr12 38640809 38640834 -105145621 + (TTA)n Simple_repeat Simple_repeat 1 25 0 846 283 178 2 chr12 38640943 38641382 -105145073 + HAL1 LINE L1 1402 1917 -590 366 282 126 16 chr12 38641825 38642080 -105144375 + HAL1 LINE L1 2109 2391 -116 1938 163 28 93 chr12 38642179 38642575 -105143880 + L1MB7 LINE L1 5706 6126 -52 1975 133 59 31 chr12 38642575 38642929 -105143526 + THE1B LTR MaLR 1 364 0 11374 107 2 4 chr12 38642929 38644513 -105141942 + THE1B-int LTR MaLR 1 1580 0 2054 125 62 28 chr12 38644513 38644865 -105141590 + THE1B LTR MaLR 1 364 0 1938 163 28 93 chr12 38644865 38644962 -105141493 + L1MB7 LINE L1 6123 6169 -9 205 214 101 45 chr12 38645560 38645649 -105140806 - L2 LINE L2 -917 2397 2304 208 354 0 25 chr12 38645946 38646025 -105140430 - MIR SINE MIR -67 141 65 262 301 97 19 chr12 38646183 38646286 -105140169 + MIR3 SINE MIR 83 193 -15 287 279 115 71 chr12 38647785 38647968 -105138487 - L2 LINE L2 0 3272 3082 341 322 147 23 chr12 38648004 38648181 -105138274 + MIR SINE MIR 39 237 -25 216 97 0 0 chr12 38648224 38648255 -105138200 + (TC)n Simple_repeat Simple_repeat 1 31 0 236 342 60 0 chr12 38648950 38649067 -105137388 + L2 LINE L2 3169 3292 -21 202 351 0 0 chr12 38649226 38649283 -105137172 + L2 LINE L2 3253 3309 -4 285 298 274 33 chr12 38649917 38650246 -105136209 - L2 LINE L2 0 3313 2906 224 211 55 9 chr12 38650732 38650841 -105135614 + (TA)n Simple_repeat Simple_repeat 2 115 0 333 47 0 0 chr12 38650891 38650934 -105135521 + (CA)n Simple_repeat Simple_repeat 2 44 0 298 310 116 103 chr12 38651014 38651343 -105135112 + L2 LINE L2 2936 3268 -4 225 345 103 14 chr12 38652750 38652895 -105133560 - MIR SINE MIR 0 262 105 194 240 0 40 chr12 38652900 38652950 -105133505 + MIR SINE MIR 197 244 -18 681 231 46 136 chr12 38653265 38653654 -105132801 + L2 LINE L2 2440 2793 -521 707 246 52 129 chr12 38653654 38654159 -105132296 - MLT1H LTR MaLR 0 549 84 376 299 138 51 chr12 38654191 38654546 -105131909 + L2 LINE L2 2804 3189 -124 1668 130 0 0 chr12 38654567 38654814 -105131641 - L1PA8A LINE L1 -4 6127 5881 57 28 0 0 chr12 38654986 38655057 -105131398 + AT_rich Low_complexity Low_complexity 1 71 0 335 306 48 93 chr12 38655068 38655441 -105131014 + L2 LINE L2 2698 3050 -263 25 51 0 0 chr12 38655471 38655510 -105130945 + AT_rich Low_complexity Low_complexity 1 39 0 211 296 136 0 chr12 38656427 38656508 -105129947 + L2 LINE L2 3168 3259 -13 2111 97 0 24 chr12 38657542 38657854 -105128601 + AluSg SINE Alu 1 305 0 440 324 74 0 chr12 38659034 38659210 -105127245 + MIR SINE MIR 66 254 -8 551 264 75 51 chr12 38659652 38659947 -105126508 - L1ME LINE L1 -335 5786 5485 249 342 158 43 chr12 38659954 38660232 -105126223 - L2 LINE L2 -2 3311 3002 286 247 12 0 chr12 38660835 38660916 -105125539 - HAL1 LINE L1 -867 1640 1559 185 314 121 48 chr12 38660959 38661166 -105125289 - MIR SINE MIR -1 261 40 226 304 80 24 chr12 38661363 38661652 -105124803 - L1MEd LINE L1 -4894 1225 921 1177 149 62 12 chr12 38661694 38661935 -105124520 - L1MD3 LINE L1 0 7995 7743 399 21 0 0 chr12 38662769 38662817 -105123638 + (TG)n Simple_repeat Simple_repeat 2 49 0 219 290 0 0 chr12 38663306 38663368 -105123087 - L2 LINE L2 0 3313 3252 257 140 80 0 chr12 38663671 38663721 -105122734 - MADE1 DNA Mariner -26 54 1 21 0 0 0 chr12 38663820 38663841 -105122614 + AT_rich Low_complexity Low_complexity 1 21 0 777 163 31 0 chr12 38664719 38664848 -105121607 + FRAM SINE Alu 28 160 -16 4643 153 9 18 chr12 38664977 38666385 -105120070 - L1PA16 LINE L1 -1 6165 4779 229 250 19 0 chr12 38666406 38666458 -105119997 - MER66A LTR ERV1 -140 338 286 320 114 0 0 chr12 38666458 38666502 -105119953 - L1PA16 LINE L1 -1373 4773 4730 300 265 20 41 chr12 38667417 38667515 -105118940 + HERV16 LTR ERVL 4296 4391 -605 1136 282 81 18 chr12 38668197 38668580 -105117875 + LTR16B LTR ERVL 15 421 -43 377 182 0 0 chr12 38668613 38668679 -105117776 - MADE1 DNA Mariner -14 66 1 290 350 95 20 chr12 38668813 38669013 -105117442 - L3 LINE CR1 -1023 554 340 279 0 0 0 chr12 38669075 38669106 -105117349 + (TA)n Simple_repeat Simple_repeat 2 32 0 29 0 0 0 chr12 38669337 38669366 -105117089 + AT_rich Low_complexity Low_complexity 1 29 0 * 478 302 42 4 chr12 38669360 38669939 -105116516 - L1MC4a LINE L1 -545 5638 5269 324 364 98 16 chr12 38670003 38670379 -105116076 - L1MC4a LINE L1 -982 5164 4758 19212 163 43 32 chr12 38670402 38674339 -105112116 + L1MA1 LINE L1 16 3994 -3571 2266 115 0 0 chr12 38674339 38674644 -105111811 + AluSg SINE Alu 4 308 -2 19212 163 43 32 chr12 38674644 38674825 -105111630 + L1MA1 LINE L1 3994 4172 -3393 2457 18 0 3 chr12 38674828 38675113 -105111342 - L1PA3 LINE L1 0 6155 5872 5609 16 5 0 chr12 38675136 38675903 -105110552 + L1PA3 LINE L1 5123 5898 -257 12308 156 32 9 chr12 38675911 38679382 -105107073 + L1MA1 LINE L1 4177 7721 0 366 291 106 57 chr12 38679430 38679942 -105106513 - L1M4 LINE L1 -1438 4708 4172 21 0 0 0 chr12 38680102 38680123 -105106332 + AT_rich Low_complexity Low_complexity 1 21 0 2082 102 0 11 chr12 38680222 38680553 -105105902 - AluSc SINE Alu 0 328 1 471 244 116 86 chr12 38680996 38681532 -105104923 - L1M4 LINE L1 -2919 3227 2676 314 331 105 6 chr12 38681767 38681948 -105104507 - L1M4 LINE L1 -3613 2533 2335 6214 88 8 4 chr12 38681996 38682985 -105103470 - L1PA10 LINE L1 -2 6166 5169 529 140 0 0 chr12 38683158 38683251 -105103204 - L1MB5 LINE L1 -1 6173 6081 907 20 0 0 chr12 38683456 38683558 -105102897 - AluY SINE Alu -208 102 1 4926 234 98 19 chr12 38683559 38685371 -105101084 + L1M4c LINE L1 1925 3593 -2789 1655 186 99 14 chr12 38685371 38685736 -105100719 - MSTD LTR MaLR 0 396 1 4926 234 98 19 chr12 38685736 38686293 -105100162 + L1M4c LINE L1 3593 4510 -1872 2117 136 0 13 chr12 38686293 38686609 -105099846 + AluSx SINE Alu 1 312 0 4926 234 98 19 chr12 38686609 38686691 -105099764 + L1M4c LINE L1 4510 4584 -1798 426 194 70 23 chr12 38686677 38686806 -105099649 + L1M4c LINE L1 2759 2893 -3489 * 416 198 9 0 chr12 38686807 38686913 -105099542 + L1M4c LINE L1 4581 4687 -1695 2714 204 42 4 chr12 38686913 38686993 -105099462 - MER44D DNA MER2_type -1882 605 529 288 0 0 0 chr12 38686993 38687025 -105099430 + (CA)n Simple_repeat Simple_repeat 2 33 0 2714 204 42 4 chr12 38687025 38687472 -105098983 - MER44D DNA MER2_type -1958 529 3 738 169 12 36 chr12 38687473 38687639 -105098816 + L1M4c LINE L1 4685 4846 -1536 2012 181 5 10 chr12 38687803 38688211 -105098244 - L1PA13 LINE L1 -1316 4830 4425 6060 102 13 11 chr12 38688215 38689549 -105096906 + L1PA13 LINE L1 4827 6163 0 2223 116 6 0 chr12 38689557 38689868 -105096587 + AluSq SINE Alu 1 313 0 471 293 39 31 chr12 38689868 38690206 -105096249 + L1ME LINE L1 1012 1391 -4981 543 275 77 91 chr12 38690267 38690696 -105095759 - L1MEd LINE L1 -1133 1357 922 266 143 0 0 chr12 38691725 38691767 -105094688 - MADE1 DNA Mariner -34 46 5 1929 166 7 0 chr12 38691902 38692197 -105094258 + AluSx SINE Alu 1 297 -15 201 39 0 0 chr12 38692199 38692225 -105094230 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2362 179 34 2 chr12 38692850 38693263 -105093192 + MSTB LTR MaLR 1 426 0 1887 131 40 37 chr12 38693978 38694352 -105092103 + THE1C LTR MaLR 1 375 0 1972 180 30 93 chr12 38694516 38694768 -105091687 - MLT1D LTR MaLR 0 505 303 1738 180 0 44 chr12 38694768 38694905 -105091550 + AluJb SINE Alu 1 143 -169 2004 142 7 3 chr12 38694905 38695215 -105091240 + AluSx SINE Alu 1 311 -1 1738 180 0 44 chr12 38695215 38695394 -105091061 + AluJb SINE Alu 143 303 -9 1972 180 30 93 chr12 38695394 38695680 -105090775 - MLT1D LTR MaLR -202 303 1 460 26 0 117 chr12 38696060 38696137 -105090318 - L1PA4 LINE L1 -3 6152 6085 746 93 9 0 chr12 38696137 38696245 -105090210 + L1PA4 LINE L1 5979 6087 -68 969 227 86 36 chr12 38696588 38696937 -105089518 + MSTD LTR MaLR 1 396 0 248 280 120 16 chr12 38697364 38697489 -105088966 - MLT1J LTR MaLR -44 467 330 554 299 6 19 chr12 38697559 38697716 -105088739 - MLT1J LTR MaLR -325 186 32 246 303 56 107 chr12 38697727 38697905 -105088550 - MER5B DNA MER1_type -9 169 1 410 202 168 42 chr12 38698166 38698285 -105088170 - MSTD LTR MaLR -86 310 177 1772 159 63 29 chr12 38699759 38700137 -105086318 + L1MA10 LINE L1 5938 6328 -6 23 33 0 0 chr12 38700604 38700634 -105085821 + AT_rich Low_complexity Low_complexity 1 30 0 383 253 123 7 chr12 38700869 38701015 -105085440 + L1MC/D LINE L1 5625 5787 -2021 7570 26 6 1 chr12 38701206 38702852 -105083603 + L1PA4 LINE L1 4504 6153 -2 23 0 0 0 chr12 38703166 38703189 -105083266 + AT_rich Low_complexity Low_complexity 1 23 0 269 375 0 0 chr12 38703389 38703477 -105082978 - MIR3 SINE MIR -7 201 114 903 280 40 20 chr12 38703757 38704007 -105082448 + MIR SINE MIR 8 262 0 257 367 56 10 chr12 38704077 38704273 -105082182 + L2 LINE L2 2600 2804 -510 28 29 0 0 chr12 38704497 38704532 -105081923 + AT_rich Low_complexity Low_complexity 1 35 0 225 313 40 30 chr12 38704684 38704783 -105081672 + L2 LINE L2 2244 2343 -971 337 342 77 78 chr12 38704811 38705576 -105080879 + L2 LINE L2 2420 3191 -81 3151 21 0 11 chr12 38706091 38706456 -105079999 - L1PA3 LINE L1 -1489 4657 4295 7770 20 0 1 chr12 38706456 38707971 -105078484 + L1PA3 LINE L1 4639 6155 0 3151 21 0 11 chr12 38707971 38707986 -105078469 - L1P LINE L1 -1851 4295 4281 413 288 7 41 chr12 38708712 38708858 -105077597 + L2 LINE L2 3172 3312 -1 2290 156 22 0 chr12 38709224 38709589 -105076866 - MER57A LTR ERV1 -30 373 1 985 109 0 0 chr12 38709589 38709726 -105076729 - MER57A-int LTR ERV1 0 7537 7401 2857 144 20 7 chr12 38709731 38710188 -105076267 + MER57-int LTR ERV1 6684 7146 -391 697 87 39 39 chr12 38710190 38710317 -105076138 + LTR54B LTR ERV1 5 131 -367 566 144 0 0 chr12 38710318 38710408 -105076047 + MER57-int LTR ERV1 7284 7373 -164 23 33 0 0 chr12 38710594 38710624 -105075831 + AT_rich Low_complexity Low_complexity 1 30 0 309 68 0 0 chr12 38711281 38711325 -105075130 + (TG)n Simple_repeat Simple_repeat 2 45 0 243 341 88 43 chr12 38711411 38711739 -105074716 - L2 LINE L2 -537 2777 2435 207 356 34 41 chr12 38712907 38713053 -105073402 - L2 LINE L2 -455 2859 2715 192 152 0 0 chr12 38713259 38713292 -105073163 + GA-rich Low_complexity Low_complexity 4 36 0 195 167 0 0 chr12 38713863 38713905 -105072550 + T-rich Low_complexity Low_complexity 3 44 0 511 170 9 18 chr12 38714533 38714645 -105071810 - L1MB8 LINE L1 -13 6165 6055 24 53 0 0 chr12 38715017 38715055 -105071400 + AT_rich Low_complexity Low_complexity 1 38 0 327 349 42 11 chr12 38715380 38715569 -105070886 + L2 LINE L2 2827 3021 -292 1428 169 51 79 chr12 38715607 38715822 -105070633 - THE1C LTR MaLR 0 375 172 2341 88 0 10 chr12 38715822 38716118 -105070337 - AluY SINE Alu -17 294 2 1428 169 51 79 chr12 38716118 38716257 -105070198 - THE1C LTR MaLR -203 172 31 3313 134 43 8 chr12 38716257 38716764 -105069691 + LTR17 LTR ERV1 256 780 0 14456 87 21 11 chr12 38716766 38718753 -105067702 + HERV17 LTR ERV1 1 2007 -6619 8032 61 1 3 chr12 38718745 38719754 -105066701 + HERV17 LTR ERV1 2430 3436 -5190 * 5784 87 4 3 chr12 38719855 38720627 -105065828 + HERV17 LTR ERV1 2982 3754 -4872 5052 44 8 0 chr12 38720606 38721219 -105065236 + HERV17 LTR ERV1 5405 6022 -2604 * 276 77 0 0 chr12 38721209 38721248 -105065207 + HERV17 LTR ERV1 7510 7548 -1078 * 2339 58 0 10 chr12 38721238 38721533 -105064922 + HERV17 LTR ERV1 8335 8626 0 2350 91 0 12 chr12 38721533 38721863 -105064592 + LTR17 LTR ERV1 1 326 -454 247 118 0 0 chr12 38721878 38721912 -105064543 - THE1C LTR MaLR -341 34 1 2557 111 3 22 chr12 38722071 38722442 -105064013 + THE1B LTR MaLR 1 364 0 246 310 39 70 chr12 38722462 38722591 -105063864 - L3 LINE CR1 -79 1498 1374 431 63 0 4 chr12 38722593 38722816 -105063639 + AluY SINE Alu 1 295 -16 198 0 0 0 chr12 38722816 38722838 -105063617 + (TA)n Simple_repeat Simple_repeat 2 23 0 201 313 100 12 chr12 38722838 38722918 -105063537 - L3 LINE CR1 -203 1374 1288 1252 119 10 15 chr12 38723054 38723255 -105063200 - L1PA16 LINE L1 -3 6163 5964 1497 185 45 31 chr12 38723744 38724036 -105062419 + AluJb SINE Alu 1 296 -16 354 303 76 15 chr12 38724099 38724231 -105062224 - L2 LINE L2 0 3272 3133 352 119 0 0 chr12 38724282 38724341 -105062114 + MER53 DNA DNA 128 186 -3 1373 265 59 10 chr12 38724644 38725153 -105061302 + L1ME3A LINE L1 5633 6166 -4 419 263 69 40 chr12 38725728 38725903 -105060552 + LTR16C LTR ERVL 311 490 -1 201 39 0 0 chr12 38727158 38727184 -105059271 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 364 320 48 84 chr12 38727571 38727905 -105058550 - L2 LINE L2 0 3272 2951 236 182 30 61 chr12 38731398 38731464 -105054991 + MER5B DNA MER1_type 1 64 -114 181 260 0 20 chr12 38733948 38733998 -105052457 + L3 LINE CR1 1216 1264 -313 2331 99 3 0 chr12 38734554 38734856 -105051599 + AluSx SINE Alu 1 303 -9 203 207 121 0 chr12 38735049 38735107 -105051348 + MIR SINE MIR 102 166 -96 436 92 0 103 chr12 38735427 38735514 -105050941 + MADE1 DNA Mariner 1 78 -2 229 211 0 0 chr12 38736401 38736453 -105050002 + A-rich Low_complexity Low_complexity 1 52 0 466 284 17 9 chr12 38736869 38736985 -105049470 + MIR SINE MIR 25 141 -121 389 214 45 0 chr12 38736989 38737078 -105049377 + L1 LINE L1 3525 3617 -2529 319 298 69 0 chr12 38737078 38737209 -105049246 + BaEV-int LTR ERV1 150 289 -6360 21188 159 152 18 chr12 38737230 38740105 -105046350 + L1MA5 LINE L1 11 2501 -3799 8194 56 18 0 chr12 38740105 38741924 -105044531 + L1PA6 LINE L1 4307 6146 -8 21188 159 152 18 chr12 38741924 38744586 -105041869 + L1MA5 LINE L1 2501 6300 0 213 145 145 29 chr12 38744587 38744656 -105041799 + MIR SINE MIR 144 220 -42 407 284 128 25 chr12 38746304 38746508 -105039947 - MIR SINE MIR -1 261 37 317 306 42 76 chr12 38746585 38746729 -105039726 + MIR SINE MIR 1 139 -123 507 281 127 5 chr12 38747090 38747311 -105039144 + MIR SINE MIR 1 248 -14 2269 102 0 3 chr12 38748111 38748415 -105038040 - AluSq SINE Alu -8 305 3 2255 83 7 17 chr12 38749088 38749390 -105037065 + AluY SINE Alu 3 301 -10 23 0 0 0 chr12 38749567 38749590 -105036865 + AT_rich Low_complexity Low_complexity 1 23 0 3575 112 54 4 chr12 38749868 38750420 -105036035 + LTR19B LTR ERV1 1 580 0 231 114 0 0 chr12 38751588 38751623 -105034832 + (CA)n Simple_repeat Simple_repeat 1 35 0 1926 105 60 78 chr12 38753265 38753647 -105032808 + THE1C LTR MaLR 1 375 0 1856 156 16 10 chr12 38756156 38756463 -105029992 + AluJo SINE Alu 1 309 -3 197 323 46 0 chr12 38757188 38757253 -105029202 - L2 LINE L2 0 3313 3246 24 32 0 0 chr12 38757552 38757583 -105028872 + AT_rich Low_complexity Low_complexity 1 31 0 235 380 40 0 chr12 38758181 38758331 -105028124 + MIR SINE MIR 58 213 -49 505 176 37 0 chr12 38758376 38758484 -105027971 + L1MB5 LINE L1 6055 6166 -8 33 25 0 0 chr12 38760118 38760158 -105026297 + AT_rich Low_complexity Low_complexity 1 40 0 366 290 213 7 chr12 38760878 38761033 -105025422 + MIR SINE MIR 32 218 -44 1347 168 91 64 chr12 38761886 38762184 -105024271 + MLT2C1 LTR ERVL 92 397 0 1950 144 3 0 chr12 38762258 38762550 -105023905 + AluSx SINE Alu 1 293 -19 2076 111 0 0 chr12 38762595 38762866 -105023589 + AluSx SINE Alu 1 271 -41 23 33 0 0 chr12 38763648 38763678 -105022777 + AT_rich Low_complexity Low_complexity 1 30 0 214 352 112 19 chr12 38764207 38764474 -105021981 + L3 LINE CR1 160 451 -1126 352 247 52 0 chr12 38764554 38764651 -105021804 - MER112 DNA MER1_type -9 251 150 23 33 0 0 chr12 38764734 38764764 -105021691 + AT_rich Low_complexity Low_complexity 1 30 0 425 268 58 0 chr12 38766292 38766430 -105020025 + L1ME4a LINE L1 5974 6119 -2 2418 193 92 31 chr12 38766820 38767343 -105019112 - MLT1F1 LTR MaLR 0 567 13 615 268 108 17 chr12 38767437 38767668 -105018787 - MIR SINE MIR -4 258 7 2110 138 0 3 chr12 38767690 38768002 -105018453 - AluSx SINE Alu -1 311 1 2789 104 65 5 chr12 38768822 38768919 -105017536 + L1PB1 LINE L1 5682 5772 -379 216 0 0 0 chr12 38768919 38768943 -105017512 + (TG)n Simple_repeat Simple_repeat 2 25 0 2789 104 65 5 chr12 38768943 38769288 -105017167 + L1PB1 LINE L1 5772 6151 0 191 371 0 0 chr12 38769846 38769908 -105016547 - L2 LINE L2 -1 3271 3210 316 266 47 148 chr12 38771509 38771765 -105014690 + MIR SINE MIR 14 243 -19 1092 212 180 6 chr12 38771973 38772284 -105014171 - MLT1A1 LTR MaLR 0 365 1 1984 151 10 0 chr12 38772331 38772636 -105013819 + AluSx SINE Alu 2 309 -3 827 181 107 23 chr12 38772676 38772892 -105013563 - MER46A DNA MER2_type 0 236 3 936 290 22 74 chr12 38773076 38773441 -105013014 + MLT1H1 LTR MaLR 3 348 -207 661 306 29 15 chr12 38773543 38773749 -105012706 + MLT1H1 LTR MaLR 382 590 0 2521 205 12 2 chr12 38775386 38775893 -105010562 + MER67D LTR ERV1 3 514 0 1693 148 4 11 chr12 38775993 38776293 -105010162 + AluJb SINE Alu 16 313 0 3740 193 44 53 chr12 38777019 38777084 -105009371 - L1MB8 LINE L1 -1 6177 6113 1857 139 0 14 chr12 38777084 38777395 -105009060 + AluJb SINE Alu 1 307 0 3740 193 44 53 chr12 38777395 38777940 -105008515 - L1MB8 LINE L1 -65 6113 5564 2253 167 65 2 chr12 38777940 38778341 -105008114 + MSTB LTR MaLR 1 426 0 3740 193 44 53 chr12 38778341 38779467 -105006988 - L1MB8 LINE L1 -614 5564 4465 312 258 11 0 chr12 38779775 38779864 -105006591 - L1MC4a LINE L1 -1907 5901 5812 278 315 90 40 chr12 38779909 38780109 -105006346 - L1MC4a LINE L1 -1979 5829 5620 * 2582 243 135 30 chr12 38780108 38780555 -105005900 - L1MB8 LINE L1 -1716 4430 4032 2002 104 45 3 chr12 38780555 38780843 -105005612 - AluSg SINE Alu -10 300 1 2582 243 135 30 chr12 38780843 38780975 -105005480 - L1MB8 LINE L1 -2114 4032 3915 2726 99 0 3 chr12 38780975 38781340 -105005115 + THE1B LTR MaLR 1 364 0 2582 243 135 30 chr12 38781340 38781668 -105004787 - L1MB8 LINE L1 -2231 3915 3426 2052 130 7 7 chr12 38781790 38782112 -105004343 - AluSx SINE Alu 0 312 1 341 354 66 22 chr12 38782206 38782387 -105004068 + MIR3 SINE MIR 17 205 -3 22 0 0 0 chr12 38782708 38782730 -105003725 + AT_rich Low_complexity Low_complexity 1 22 0 2076 213 32 4 chr12 38783718 38784221 -105002234 + L1 LINE L1 3932 4448 -1698 2050 159 19 8 chr12 38784222 38784592 -105001863 + L1PA16 LINE L1 5791 6164 -2 288 111 0 0 chr12 38784671 38784716 -105001739 + (TG)n Simple_repeat Simple_repeat 2 46 0 1565 181 36 0 chr12 38784769 38785046 -105001409 - MER47B DNA MER2_type -1 417 131 336 48 0 0 chr12 38785140 38785182 -105001273 + (TA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr12 38785422 38785443 -105001012 + AT_rich Low_complexity Low_complexity 1 21 0 222 293 123 19 chr12 38786029 38786135 -105000320 + MIR3 SINE MIR 2 118 -90 227 163 47 47 chr12 38786195 38786281 -105000174 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 258 347 90 0 chr12 38786289 38786433 -105000022 - MIR SINE MIR -57 205 49 22 80 0 0 chr12 38786858 38786908 -104999547 + AT_rich Low_complexity Low_complexity 1 50 0 1512 208 3 7 chr12 38787354 38787652 -104998803 + AluJo SINE Alu 4 300 -12 236 137 20 0 chr12 38787777 38787828 -104998627 + GA-rich Low_complexity Low_complexity 4 55 0 298 297 40 20 chr12 38788185 38788286 -104998169 - L2 LINE L2 -9 3263 3161 190 283 192 10 chr12 38789789 38789888 -104996567 + MIR SINE MIR 67 183 -79 293 311 142 23 chr12 38790685 38790904 -104995551 + MIR SINE MIR 9 253 -9 595 272 31 0 chr12 38791041 38791203 -104995252 + MER97c DNA MER1_type? 2 168 -922 2337 86 0 0 chr12 38791780 38792082 -104994373 - AluSq SINE Alu -11 302 1 1477 187 10 33 chr12 38792519 38792824 -104993631 - AluJo SINE Alu -12 300 3 358 270 251 18 chr12 38793314 38793477 -104992978 - MIR SINE MIR -58 204 4 22 0 0 0 chr12 38794018 38794040 -104992415 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 38794697 38794728 -104991727 + AT_rich Low_complexity Low_complexity 1 31 0 6771 174 12 7 chr12 38795785 38797743 -104988712 + L1PB2 LINE L1 3816 5788 -363 270 0 0 0 chr12 38797743 38797773 -104988682 + (TA)n Simple_repeat Simple_repeat 1 30 0 6771 174 12 7 chr12 38797773 38798134 -104988321 + L1PB2 LINE L1 5788 6146 -5 288 308 0 19 chr12 38798939 38799046 -104987409 + L1ME2 LINE L1 5574 5678 -2130 335 269 75 55 chr12 38799059 38799260 -104987195 + L1ME2 LINE L1 5674 5878 -286 1770 128 80 3 chr12 38799635 38799923 -104986532 + AluSx SINE Alu 1 310 -2 617 71 24 0 chr12 38800308 38800392 -104986063 - AluY SINE Alu -19 292 207 1354 213 23 46 chr12 38800986 38801376 -104985079 + MER52A LTR ERV1 1 381 -1374 4260 227 62 8 chr12 38801401 38802457 -104983998 + MER52A LTR ERV1 644 1755 0 2048 124 26 59 chr12 38803061 38803449 -104983006 + THE1C LTR MaLR 1 375 0 21 57 0 0 chr12 38805117 38805152 -104981303 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr12 38805986 38806007 -104980448 + AT_rich Low_complexity Low_complexity 1 21 0 1015 151 4 3 chr12 38806198 38806459 -104979996 - MER1B DNA MER1_type 0 339 1 4617 234 78 58 chr12 38807363 38807676 -104978779 + L1M4 LINE L1 14 319 -6223 785 127 0 0 chr12 38807676 38807802 -104978653 + L1MA6 LINE L1 6175 6300 0 4617 234 78 58 chr12 38807802 38809041 -104977414 + L1M4 LINE L1 319 1597 -4945 318 277 0 12 chr12 38809768 38809851 -104976604 + L2 LINE L2 3191 3272 0 204 224 20 0 chr12 38810037 38810086 -104976369 + L2 LINE L2 3261 3310 -3 30 45 0 0 chr12 38810773 38810817 -104975638 + AT_rich Low_complexity Low_complexity 1 44 0 29 0 0 0 chr12 38811048 38811077 -104975378 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr12 38813859 38813888 -104972567 + AT_rich Low_complexity Low_complexity 1 29 0 182 288 55 14 chr12 38814914 38814987 -104971468 + MIR SINE MIR 75 150 -112 21 36 0 0 chr12 38816189 38816217 -104970238 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr12 38816462 38816507 -104969948 + AT_rich Low_complexity Low_complexity 1 45 0 194 91 30 0 chr12 38816525 38816558 -104969897 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr12 38816617 38816639 -104969816 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr12 38816826 38816866 -104969589 + AT_rich Low_complexity Low_complexity 1 40 0 1917 158 7 0 chr12 38819116 38819426 -104967029 - AluJb SINE Alu 0 312 1 7173 33 10 0 chr12 38820422 38821294 -104965161 - L1PA5 LINE L1 -1703 4443 3563 7589 40 0 7 chr12 38821294 38823027 -104963428 + L1PA5 LINE L1 4439 6175 0 188 382 0 0 chr12 38825789 38825844 -104960611 + L2 LINE L2 3209 3263 -9 1734 151 11 7 chr12 38825868 38826152 -104960303 - AluJo SINE Alu -23 289 5 281 279 124 56 chr12 38826195 38826356 -104960099 + MER5A DNA MER1_type 18 189 0 834 184 159 18 chr12 38827941 38828224 -104958231 + MER33 DNA MER1_type 1 323 -1 2198 106 7 0 chr12 38828321 38828622 -104957833 - AluSx SINE Alu -6 306 4 637 252 122 40 chr12 38828634 38828812 -104957643 - L1ME LINE L1 -305 5816 5654 1999 60 0 12 chr12 38828812 38829063 -104957392 - AluY SINE Alu -9 302 55 637 252 122 40 chr12 38829063 38829213 -104957242 - L1ME LINE L1 -467 5654 5461 2259 109 19 30 chr12 38829315 38829683 -104956772 + THE1B LTR MaLR 1 364 0 10639 100 40 2 chr12 38829684 38831205 -104955250 + THE1B-int LTR MaLR 2 1580 0 2131 113 51 25 chr12 38831205 38831560 -104954895 + THE1B LTR MaLR 1 364 0 329 95 0 0 chr12 38831566 38831608 -104954847 + THE1A LTR MaLR 312 353 -2 25 0 0 0 chr12 38832008 38832033 -104954422 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr12 38833143 38833170 -104953285 + AT_rich Low_complexity Low_complexity 1 27 0 1986 138 0 13 chr12 38833484 38833782 -104952673 + AluSx SINE Alu 1 294 -18 1836 144 44 9 chr12 38833966 38834286 -104952169 + MER44D DNA MER2_type 9 609 0 26 50 0 0 chr12 38834733 38834773 -104951682 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr12 38834856 38834877 -104951578 + AT_rich Low_complexity Low_complexity 1 21 0 2677 17 0 0 chr12 38836073 38836373 -104950082 + AluYa5 SINE Alu 1 300 -11 1187 179 0 14 chr12 38836667 38836885 -104949570 - AluJo SINE Alu -12 300 86 1362 188 46 10 chr12 38837117 38837420 -104949035 + MER33 DNA MER1_type 10 323 -1 29 78 0 0 chr12 38837767 38837831 -104948624 + AT_rich Low_complexity Low_complexity 1 64 0 198 0 0 0 chr12 38838462 38838484 -104947971 + (TC)n Simple_repeat Simple_repeat 2 23 0 776 276 79 9 chr12 38838826 38839054 -104947401 + MIR SINE MIR 6 249 -13 1584 90 34 0 chr12 38839333 38839567 -104946888 + MER75B DNA T2_type 2 243 0 195 129 0 0 chr12 38840748 38840779 -104945676 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 783 242 11 22 chr12 38841518 38841700 -104944755 - MER5A DNA MER1_type 0 189 10 21 0 0 0 chr12 38842251 38842272 -104944183 + AT_rich Low_complexity Low_complexity 1 21 0 1281 269 120 62 chr12 38842809 38843167 -104943288 - L2 LINE L2 -1373 1941 1605 1993 128 13 0 chr12 38843167 38843471 -104942984 - AluSg SINE Alu -2 308 1 1281 269 120 62 chr12 38843471 38843837 -104942618 - L2 LINE L2 -1709 1605 1175 2727 23 0 0 chr12 38844650 38844960 -104941495 + AluYa5 SINE Alu 1 310 -1 294 73 0 0 chr12 38845177 38845218 -104941237 + (GA)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr12 38845606 38845629 -104940826 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 38845874 38845899 -104940556 + AT_rich Low_complexity Low_complexity 1 25 0 2048 130 3 0 chr12 38846170 38846470 -104939985 - AluSq SINE Alu -10 303 3 933 147 7 0 chr12 38846714 38846857 -104939598 + AluSq/x SINE Alu 3 146 -166 202 353 32 39 chr12 38848101 38848257 -104938198 + L2 LINE L2 2614 2768 -546 351 234 113 4 chr12 38848637 38848784 -104937671 + MIR SINE MIR 3 170 -62 235 316 77 39 chr12 38849144 38849224 -104937231 + MIR SINE MIR 32 107 -155 225 0 0 0 chr12 38849224 38849249 -104937206 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 649 56 0 11 chr12 38849249 38849333 -104937122 - L1MA1 LINE L1 -5 6297 6215 235 316 77 39 chr12 38849333 38849411 -104937044 + MIR SINE MIR 106 192 -70 510 225 182 0 chr12 38849455 38849642 -104936813 - MIR SINE MIR -5 257 37 5447 119 2 1 chr12 38851551 38852348 -104934107 - L1PA15 LINE L1 -3 6162 5365 1968 80 50 47 chr12 38852354 38852653 -104933802 - AluSg SINE Alu -10 300 1 21 36 0 0 chr12 38852748 38852776 -104933679 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr12 38852808 38852838 -104933617 + AT_rich Low_complexity Low_complexity 1 30 0 4834 82 4 30 chr12 38855461 38856195 -104930260 + L1P LINE L1 62 776 -5370 246 56 0 0 chr12 38856595 38856631 -104929824 - L1M LINE L1 -879 5289 5254 * 1077 165 85 0 chr12 38856604 38856647 -104929808 - L1 LINE L1 -866 5280 5242 2025 195 62 14 chr12 38856647 38857083 -104929372 - MSTB2 LTR MaLR 0 457 1 1077 165 85 0 chr12 38857083 38857263 -104929192 - L1 LINE L1 -904 5242 5038 21 0 0 0 chr12 38857423 38857444 -104929011 + AT_rich Low_complexity Low_complexity 1 21 0 1470 200 0 23 chr12 38857503 38857803 -104928652 - AluJo SINE Alu -19 293 1 943 304 110 42 chr12 38858096 38858903 -104927552 - L2 LINE L2 -191 3081 2220 204 40 0 0 chr12 38858910 38858935 -104927520 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 208 282 103 68 chr12 38859796 38859913 -104926542 + L2 LINE L2 3152 3272 0 1940 92 3 31 chr12 38860170 38860464 -104925991 + AluY SINE Alu 18 303 -8 294 73 0 0 chr12 38860687 38860728 -104925727 + (GA)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr12 38861116 38861139 -104925316 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr12 38861384 38861409 -104925046 + AT_rich Low_complexity Low_complexity 1 25 0 303 331 16 8 chr12 38861531 38861655 -104924800 + HAL1b LINE L1 1174 1298 -50 2279 86 7 3 chr12 38861680 38861982 -104924473 - AluSq SINE Alu -10 303 1 585 314 54 16 chr12 38862624 38862866 -104923589 - MIR SINE MIR 0 262 12 1962 89 3 31 chr12 38864341 38864634 -104921821 - AluY SINE Alu -9 302 18 208 282 103 68 chr12 38864891 38865008 -104921447 - L2 LINE L2 0 3272 3152 204 40 0 0 chr12 38865869 38865894 -104920561 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 931 304 110 42 chr12 38865901 38866708 -104919747 + L2 LINE L2 2220 3081 -191 1464 199 0 27 chr12 38867001 38867302 -104919153 + AluJo SINE Alu 1 293 -19 21 0 0 0 chr12 38867361 38867382 -104919073 + AT_rich Low_complexity Low_complexity 1 21 0 4849 159 31 76 chr12 38867542 38867722 -104918733 + L1MA10 LINE L1 5038 5225 -1109 2025 195 62 14 chr12 38867722 38868158 -104918297 + MSTB2 LTR MaLR 1 457 0 4849 159 31 76 chr12 38868158 38868754 -104917701 + L1MA10 LINE L1 5225 5751 -583 189 0 0 0 chr12 38868754 38868775 -104917680 + (CA)n Simple_repeat Simple_repeat 2 22 0 4849 159 31 76 chr12 38868775 38869334 -104917121 + L1MA10 LINE L1 5751 6334 0 221 57 29 0 chr12 38870908 38870943 -104915512 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 901 162 28 0 chr12 38870970 38871112 -104915343 - FRAM SINE Alu -27 149 4 203 187 27 27 chr12 38872146 38872221 -104914234 + (TA)n Simple_repeat Simple_repeat 1 75 0 1066 103 85 24 chr12 38872275 38872440 -104914015 - AluSx SINE Alu -137 175 1 1670 186 74 33 chr12 38872550 38872942 -104913513 + Tigger3b DNA MER2_type 2 409 -822 3750 234 73 10 chr12 38873076 38873098 -104913357 + L1 LINE L1 4228 4247 -1899 234 0 0 0 chr12 38873098 38873124 -104913331 + (CA)n Simple_repeat Simple_repeat 2 27 0 3750 234 73 10 chr12 38873124 38874189 -104912266 + L1 LINE L1 4247 5384 -762 1169 195 14 65 chr12 38874239 38874531 -104911924 + L1MB2 LINE L1 5308 5584 -587 1702 227 78 73 chr12 38874531 38875082 -104911373 + MLT2B3 LTR ERVL 1 554 0 3115 157 26 2 chr12 38875082 38875622 -104910833 + L1MB2 LINE L1 5580 6132 -39 428 51 17 0 chr12 38875622 38875681 -104910774 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 1798 130 3 85 chr12 38875750 38876081 -104910374 + AluSx SINE Alu 1 304 -8 260 234 48 54 chr12 38876160 38876327 -104910128 + L1ME LINE L1 5112 5277 -869 24667 50 1 3 chr12 38876327 38879416 -104907039 + L1PA3 LINE L1 3 3087 -3059 42760 32 21 1 chr12 38879417 38885445 -104901010 + L1HS LINE L1 4 6154 -1 19009 32 2 2 chr12 38885459 38888535 -104897920 + L1PA3 LINE L1 3072 6152 -3 377 242 73 48 chr12 38888548 38888713 -104897742 + L1ME LINE L1 5263 5431 -733 2634 123 131 6 chr12 38888879 38889392 -104897063 + Tigger3b DNA MER2_type 552 1128 -103 3021 116 31 11 chr12 38889408 38889864 -104896591 + MER1A DNA MER1_type 59 523 -6 593 223 0 0 chr12 38889871 38889983 -104896472 + Tigger3b DNA MER2_type 1119 1230 -1 266 319 31 6 chr12 38890720 38890883 -104895572 + L1MEd LINE L1 13 179 -5940 330 287 116 63 chr12 38891118 38891498 -104894957 + L1MEd LINE L1 440 839 -5280 1202 226 0 0 chr12 38891596 38891853 -104894602 - L1 LINE L1 -1059 5087 4831 910 282 39 41 chr12 38891849 38892569 -104893886 + L1MEd LINE L1 975 1726 -4584 * 373 283 81 29 chr12 38892929 38893311 -104893144 + L1MEd LINE L1 2130 2531 -3598 2154 189 57 30 chr12 38893311 38893851 -104892604 + L1MD3 LINE L1 7439 7993 -2 1041 208 69 86 chr12 38893849 38894286 -104892169 + L1MC4 LINE L1 7560 7991 -51 * 1582 191 11 7 chr12 38894286 38894593 -104891862 - AluJo SINE Alu 0 313 6 1041 208 69 86 chr12 38894593 38894645 -104891810 + L1MC4 LINE L1 7991 8042 0 8161 159 32 24 chr12 38894804 38896532 -104889923 + L1MA2 LINE L1 8 3014 -4551 2195 110 24 0 chr12 38896532 38896824 -104889631 + AluSx SINE Alu 2 300 -12 8161 159 32 24 chr12 38896824 38896989 -104889466 + L1MA2 LINE L1 3014 3176 -4389 2393 120 29 0 chr12 38896990 38897331 -104889124 + THE1B LTR MaLR 1 351 -13 13751 169 21 41 chr12 38897333 38897842 -104888613 + L1MA2 LINE L1 3204 3722 -4001 3020 90 50 0 chr12 38897842 38898265 -104888190 + MLT2A1 LTR ERVL 1 444 0 13751 169 21 41 chr12 38898265 38902370 -104884085 + L1MA2 LINE L1 3722 7723 0 4785 236 27 22 chr12 38903256 38904790 -104881665 + L1 LINE L1 3951 5492 -2073 345 50 0 57 chr12 38904902 38905011 -104881444 + L1PA3 LINE L1 6076 6166 0 329 243 81 47 chr12 38905012 38905160 -104881295 + L1ME3A LINE L1 5279 5431 -731 230 235 44 15 chr12 38905219 38905287 -104881168 + L1ME3A LINE L1 5514 5583 -579 804 232 62 0 chr12 38905311 38905488 -104880967 - MLT1E2 LTR MaLR 0 626 439 570 237 116 82 chr12 38905526 38905758 -104880697 - MLT1E2 LTR MaLR -327 299 60 1124 291 62 67 chr12 38905947 38906561 -104879894 - MLT1E2-int LTR MaLR -100 1271 661 954 259 47 20 chr12 38906843 38907302 -104879153 - MLT1E2 LTR MaLR -19 607 60 380 198 63 61 chr12 38907593 38907758 -104878697 + L1ME3A LINE L1 5785 5951 -215 1652 155 0 59 chr12 38907791 38908081 -104878374 + AluJo SINE Alu 1 273 -39 181 359 120 26 chr12 38908106 38908223 -104878232 - L2 LINE L2 -27 3245 3118 1304 211 83 62 chr12 38908435 38908502 -104877953 + MSTD LTR MaLR 3 67 -329 2570 92 30 14 chr12 38908502 38908871 -104877584 - THE1C LTR MaLR 0 375 1 1304 211 83 62 chr12 38908871 38909187 -104877268 + MSTD LTR MaLR 67 394 -2 1707 124 4 24 chr12 38910528 38910778 -104875677 - AluSg/x SINE Alu -3 309 65 23 33 0 0 chr12 38911136 38911166 -104875289 + AT_rich Low_complexity Low_complexity 1 30 0 214 191 0 21 chr12 38912484 38912531 -104873924 - L2 LINE L2 -4 3309 3264 22 35 0 0 chr12 38912887 38912916 -104873539 + AT_rich Low_complexity Low_complexity 1 29 0 2444 73 0 16 chr12 38913825 38914140 -104872315 - AluY SINE Alu -1 310 1 426 244 0 43 chr12 38914238 38914353 -104872102 + MIR SINE MIR 116 225 -37 6630 71 11 11 chr12 38914354 38915292 -104871163 - L1PA8 LINE L1 -2 6170 5213 254 313 12 24 chr12 38916754 38916837 -104869618 + MIR SINE MIR 16 97 -111 238 316 108 22 chr12 38916927 38917077 -104869378 + MIR SINE MIR 16 181 -66 270 348 43 0 chr12 38918279 38918371 -104868084 - L2 LINE L2 -8 3264 3169 2241 126 0 0 chr12 38919194 38919504 -104866951 - AluSg SINE Alu 0 310 1 2589 56 0 0 chr12 38919839 38920143 -104866312 - AluY SINE Alu -7 304 1 2221 98 3 3 chr12 38920268 38920595 -104865860 + L1P LINE L1 4927 5253 -893 841 189 89 66 chr12 38921522 38921824 -104864631 + MLT1C LTR MaLR 6 314 -153 337 153 24 52 chr12 38921934 38922011 -104864444 - AluS SINE Alu -231 72 1 737 286 150 4 chr12 38922038 38922385 -104864070 - L2 LINE L2 -240 3073 2681 * 1004 306 88 66 chr12 38922383 38923104 -104863351 + L2 LINE L2 2149 2899 -414 2141 95 3 36 chr12 38923104 38923408 -104863047 - AluSc SINE Alu -15 294 1 1004 306 88 66 chr12 38923408 38923796 -104862659 + L2 LINE L2 2899 3277 -36 21 0 0 0 chr12 38923954 38923975 -104862480 + AT_rich Low_complexity Low_complexity 1 21 0 202 278 25 130 chr12 38924245 38924407 -104862048 + L3 LINE CR1 626 770 -807 224 396 97 22 chr12 38925240 38925921 -104860534 - L2 LINE L2 -605 2709 1978 388 339 26 0 chr12 38927630 38927745 -104858710 + L2 LINE L2 3154 3271 -1 986 123 80 71 chr12 38928572 38928784 -104857671 + L1MD1 LINE L1 6029 6242 0 360 269 95 108 chr12 38929579 38929988 -104856467 + L1MC5 LINE L1 7452 7855 -106 2156 111 0 9 chr12 38930787 38931102 -104855353 - AluSx SINE Alu 0 312 1 207 167 0 0 chr12 38932908 38932944 -104853511 + CT-rich Low_complexity Low_complexity 1 36 0 1064 246 82 77 chr12 38933190 38933630 -104852825 + MER65B LTR ERV1 2 513 -18 303 213 74 57 chr12 38933655 38933777 -104852678 + L1ME4a LINE L1 5983 6106 -15 192 77 0 0 chr12 38933904 38933930 -104852525 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1912 180 63 27 chr12 38934458 38934903 -104851552 - MER65C LTR ERV1 0 461 1 436 285 23 32 chr12 38935011 38935232 -104851223 + L1ME4a LINE L1 5664 5882 -239 209 196 43 0 chr12 38935442 38935488 -104850967 + GA-rich Low_complexity Low_complexity 4 51 0 22 35 0 0 chr12 38937464 38937493 -104848962 + AT_rich Low_complexity Low_complexity 1 29 0 340 297 172 0 chr12 38938313 38938441 -104848014 - MIR SINE MIR 0 262 113 1794 301 96 36 chr12 38939061 38939372 -104847083 + L2 LINE L2 1834 2125 -1188 1086 193 157 54 chr12 38939372 38939703 -104846752 + MLT1A1 LTR MaLR 1 365 0 1794 301 96 36 chr12 38939703 38940648 -104845807 + L2 LINE L2 2125 3171 -142 2276 85 3 10 chr12 38940651 38940958 -104845497 + AluY SINE Alu 1 305 -6 1358 92 0 0 chr12 38940958 38941131 -104845324 + AluSp SINE Alu 134 306 -7 221 167 30 121 chr12 38941137 38941203 -104845252 + L2 LINE L2 3139 3198 -74 246 229 0 0 chr12 38941440 38941501 -104844954 + L1ME4a LINE L1 6061 6121 0 421 80 35 6 chr12 38942866 38942942 -104843513 + MLT2A2 LTR ERVL 388 453 0 5510 177 48 1 chr12 38942942 38944076 -104842379 + L1 LINE L1 3653 4840 -1306 1431 129 45 24 chr12 38944089 38944376 -104842079 + L1MA7 LINE L1 5999 6291 0 2304 206 24 24 chr12 38944433 38945010 -104841445 + L1MB1 LINE L1 3211 3787 -2359 392 161 86 37 chr12 38945890 38945971 -104840484 + L1MDa LINE L1 16 100 -6440 652 164 9 0 chr12 38945977 38946093 -104840362 + L1MD1 LINE L1 6074 6190 -52 1824 105 56 4 chr12 38946147 38946414 -104840041 + AluSg SINE Alu 12 292 -18 1773 186 53 11 chr12 38946414 38946775 -104839680 + MER67C LTR ERV1 26 401 -309 2820 176 8 4 chr12 38946778 38947262 -104839193 - MER66B LTR ERV1 0 486 1 2096 200 41 15 chr12 38947266 38949520 -104836935 + L1MB1 LINE L1 3787 6166 -23 1998 132 89 8 chr12 38949520 38949887 -104836568 + L1MB1 LINE L1 5769 6168 0 2096 200 41 15 chr12 38949887 38949908 -104836547 + L1MB1 LINE L1 6166 6185 -4 418 246 93 65 chr12 38950496 38950744 -104835711 + L1MC5 LINE L1 7198 7452 -509 27 29 0 0 chr12 38950757 38950791 -104835664 + AT_rich Low_complexity Low_complexity 1 34 0 390 265 119 7 chr12 38950804 38950955 -104835500 + L1MC4 LINE L1 7735 7902 -140 1158 294 93 13 chr12 38951008 38951171 -104835284 + L1ME3A LINE L1 2918 3067 -3079 1806 172 0 0 chr12 38951171 38951468 -104834987 + AluSx SINE Alu 1 297 -15 1158 294 93 13 chr12 38951468 38952227 -104834228 + L1ME3A LINE L1 3067 3914 -2232 2358 70 3 10 chr12 38952275 38952588 -104833867 + AluY SINE Alu 1 311 0 232 283 0 0 chr12 38952588 38952648 -104833807 + L1ME3A LINE L1 4090 4149 -1997 750 214 80 85 chr12 38952725 38952949 -104833506 + MER58A DNA MER1_type 2 224 0 1722 271 99 37 chr12 38953031 38954274 -104832181 + L1ME3A LINE L1 4808 6170 0 1950 126 0 10 chr12 38955380 38955673 -104830782 - AluSx SINE Alu -22 290 1 315 0 0 0 chr12 38955820 38955855 -104830600 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 399 21 0 0 chr12 38955854 38955902 -104830553 + (GA)n Simple_repeat Simple_repeat 1 48 0 29 0 0 0 chr12 38956474 38956503 -104829952 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr12 38957311 38957340 -104829115 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr12 38957604 38957625 -104828830 + AT_rich Low_complexity Low_complexity 1 21 0 893 325 97 50 chr12 38957909 38958336 -104828119 - L3 LINE CR1 -89 1488 1026 460 130 0 13 chr12 38958336 38958413 -104828042 + MER116 DNA Mariner 5 80 0 893 325 97 50 chr12 38958413 38958560 -104827895 - L3 LINE CR1 -551 1026 887 507 230 93 22 chr12 38958685 38958824 -104827631 - MIR SINE MIR -21 241 93 5536 55 0 7 chr12 38959450 38960156 -104826299 + L1PA7 LINE L1 5454 6154 0 204 67 0 0 chr12 38960161 38960191 -104826264 + (TAAAAA)n Simple_repeat Simple_repeat 4 33 0 696 274 18 0 chr12 38960211 38960379 -104826076 + MIR SINE MIR 57 227 -35 23 54 0 0 chr12 38960383 38960420 -104826035 + AT_rich Low_complexity Low_complexity 1 37 0 2333 91 3 0 chr12 38961205 38961501 -104824954 + AluSp SINE Alu 1 297 -16 820 121 0 64 chr12 38963310 38963451 -104823004 - FLAM_C SINE Alu -1 132 1 204 182 0 0 chr12 38963956 38964000 -104822455 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 689 194 107 20 chr12 38965658 38965854 -104820601 - MLT1A1 LTR MaLR -127 238 26 519 287 0 0 chr12 38966939 38967068 -104819387 - MER94 DNA DNA -5 129 1 272 253 144 41 chr12 38967103 38967249 -104819206 - L2 LINE L2 -560 2754 2594 2477 55 0 10 chr12 38967528 38967840 -104818615 - AluY SINE Alu -2 309 1 395 355 121 23 chr12 38967843 38968301 -104818154 + L2 LINE L2 2690 3219 -94 23 0 0 0 chr12 38968385 38968408 -104818047 + AT_rich Low_complexity Low_complexity 1 23 0 719 178 15 22 chr12 38968507 38968642 -104817813 - AluJb SINE Alu -178 134 1 1324 149 56 63 chr12 38969116 38969418 -104817037 - MER44D DNA MER2_type -38 571 2 2241 150 56 30 chr12 38970309 38970825 -104815630 - MLT2A2 LTR ERVL -2 552 1 426 333 72 46 chr12 38970861 38971318 -104815137 - L1 LINE L1 -1531 4615 4147 1740 237 84 22 chr12 38971412 38971901 -104814554 + LTR40a LTR ERVL 1 519 0 2319 93 0 3 chr12 38972161 38972463 -104813992 + AluSg SINE Alu 1 301 -9 2212 114 0 3 chr12 38972464 38972761 -104813694 + AluSx SINE Alu 1 296 -16 323 316 64 44 chr12 38972810 38973226 -104813229 - ERVL LTR ERVL -333 5431 5011 519 313 35 46 chr12 38973296 38973641 -104812814 - ERVL LTR ERVL -956 4808 4468 858 322 44 0 chr12 38973754 38974096 -104812359 - ERVL LTR ERVL -3496 2197 1802 785 255 49 36 chr12 38976632 38976890 -104809565 - L1MEc LINE L1 -6022 374 110 198 118 0 0 chr12 38976890 38976924 -104809531 + (TTG)n Simple_repeat Simple_repeat 2 35 0 785 255 49 36 chr12 38976924 38976994 -104809461 - L1MEc LINE L1 -6286 110 42 41539 44 1 3 chr12 38977891 38984043 -104802412 - L1PA3 LINE L1 -3 6152 13 798 246 5 0 chr12 38984207 38984414 -104802041 + L1 LINE L1 2728 2935 -3211 2489 249 81 20 chr12 38984416 38986452 -104800003 - L1 LINE L1 -3365 3017 971 794 128 0 0 chr12 38986452 38986569 -104799886 - MSTB LTR MaLR -309 117 1 601 237 40 109 chr12 38987295 38987616 -104798839 + AluJo SINE Alu 1 299 -3 2827 99 30 180 chr12 38987984 38988711 -104797744 + MER51A LTR ERV1 1 618 -16 2125 135 0 0 chr12 38989128 38989432 -104797023 - AluSx SINE Alu -8 304 1 31 0 0 0 chr12 38989466 38989497 -104796958 + AT_rich Low_complexity Low_complexity 1 31 0 2137 105 10 7 chr12 38989802 38990096 -104796359 - AluSp SINE Alu -18 295 1 220 286 10 61 chr12 38990545 38990643 -104795812 - MIR SINE MIR -95 167 75 3449 101 28 1 chr12 38991373 38991912 -104794543 + MER41A LTR ERV1 1 554 0 1881 172 27 12 chr12 38992694 38993032 -104793423 + MER61A LTR ERV1 1 343 0 25 75 0 0 chr12 38993385 38993438 -104793017 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chr12 38993797 38993825 -104792630 + AT_rich Low_complexity Low_complexity 1 28 0 206 292 42 0 chr12 38993849 38993921 -104792534 + MER5C DNA MER1_type 14 88 -236 2468 66 0 0 chr12 38994512 38994813 -104791642 + AluY SINE Alu 1 301 -10 206 296 45 45 chr12 38995531 38995619 -104790836 + L2 LINE L2 2334 2421 -893 1605 240 20 24 chr12 38995629 38996124 -104790331 + MLT1D LTR MaLR 13 505 0 487 257 33 26 chr12 38996656 38996808 -104789647 - MIR SINE MIR -26 236 84 354 311 34 51 chr12 38996975 38997152 -104789303 + L1ME4a LINE L1 4152 4325 -1821 3551 153 38 19 chr12 38997614 38998334 -104788121 - L1MB7 LINE L1 -8 6176 5444 348 326 27 16 chr12 38998845 38999032 -104787423 + L1ME4a LINE L1 5265 5453 -717 2037 126 136 16 chr12 38999290 38999672 -104786783 + MSTA LTR MaLR 1 428 0 701 204 121 11 chr12 38999804 38999983 -104786472 + MIR SINE MIR 38 236 -26 265 176 29 73 chr12 39000121 39000189 -104786266 - L2 LINE L2 -5 3308 3244 187 327 204 6 chr12 39001239 39001401 -104785054 - MIR SINE MIR -46 216 23 309 359 34 26 chr12 39002554 39002671 -104783784 - L2 LINE L2 -8 3264 3147 267 79 0 0 chr12 39004481 39004519 -104781936 + (TA)n Simple_repeat Simple_repeat 1 38 0 1625 189 0 14 chr12 39004540 39004826 -104781629 - AluSx SINE Alu -30 282 1 2313 88 3 3 chr12 39005045 39005342 -104781113 - AluSp SINE Alu -16 297 1 3807 107 5 0 chr12 39006761 39007312 -104779143 + MER41A LTR ERV1 1 554 0 236 333 58 25 chr12 39007632 39007752 -104778703 - MIR3 SINE MIR -9 199 76 27 29 0 0 chr12 39007933 39007967 -104778488 + AT_rich Low_complexity Low_complexity 1 34 0 480 18 0 0 chr12 39008250 39008307 -104778148 + (TC)n Simple_repeat Simple_repeat 1 57 0 313 267 61 0 chr12 39009953 39010084 -104776371 + L1ME4a LINE L1 5766 5904 -217 225 198 62 10 chr12 39010086 39010182 -104776273 + (TA)n Simple_repeat Simple_repeat 1 101 0 662 196 0 14 chr12 39010287 39010425 -104776030 - MIR SINE MIR -15 247 112 1638 220 3 21 chr12 39011641 39012013 -104774442 + MLT1A1 LTR MaLR 1 365 0 467 205 79 53 chr12 39012067 39012257 -104774198 + MER63 DNA MER1_type 1 195 -866 * 1127 216 75 23 chr12 39012254 39012601 -104773854 + MER63 DNA MER1_type 641 1005 -56 448 237 42 34 chr12 39012736 39012854 -104773601 - MER5A DNA MER1_type -16 173 55 212 310 161 11 chr12 39012900 39012987 -104773468 - L2 LINE L2 -11 3261 3162 2100 119 3 7 chr12 39013422 39013716 -104772739 + AluSx SINE Alu 1 293 -19 1209 95 18 24 chr12 39014625 39014961 -104771494 + (GAAA)n Simple_repeat Simple_repeat 1 335 0 493 294 95 17 chr12 39015301 39015532 -104770923 - MIR SINE MIR 0 262 14 24 67 0 0 chr12 39015562 39015607 -104770848 + AT_rich Low_complexity Low_complexity 1 45 0 2391 75 0 38 chr12 39016945 39017263 -104769192 - AluSg SINE Alu -4 306 1 2571 217 61 69 chr12 39019820 39020469 -104765986 - L1ME1 LINE L1 -5 6161 5508 2207 97 0 13 chr12 39020469 39020767 -104765688 + AluSc SINE Alu 1 294 -15 2571 217 61 69 chr12 39020767 39021820 -104764635 - L1ME1 LINE L1 -658 5508 4469 900 261 40 10 chr12 39021820 39022123 -104764332 + MLT1C LTR MaLR 156 467 0 51 83 0 0 chr12 39022267 39022388 -104764067 + AT_rich Low_complexity Low_complexity 1 121 0 274 268 0 0 chr12 39022465 39022521 -104763934 - L2 LINE L2 -2 3270 3215 2262 176 52 2 chr12 39022636 39023061 -104763394 - L1PA16 LINE L1 -9 6157 5712 203 262 0 0 chr12 39023199 39023260 -104763195 + A-rich Low_complexity Low_complexity 1 61 0 * 205 77 77 0 chr12 39023223 39023262 -104763193 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 673 273 88 73 chr12 39024415 39024826 -104761629 - MLT1H1 LTR MaLR -3 552 130 610 182 63 0 chr12 39025629 39025722 -104760733 - MER3 DNA MER1_type 0 209 102 590 75 0 0 chr12 39025722 39025802 -104760653 - MADE1 DNA Mariner 0 80 1 610 182 63 0 chr12 39025802 39025851 -104760604 - MER3 DNA MER1_type -107 102 58 2220 117 3 0 chr12 39025878 39026185 -104760270 - AluSx SINE Alu -4 308 1 366 329 14 56 chr12 39026224 39026437 -104760018 + L2 LINE L2 2521 2724 -590 210 331 54 31 chr12 39026451 39026581 -104759874 + L2 LINE L2 2936 3068 -204 262 347 126 12 chr12 39026850 39027017 -104759438 + L2 LINE L2 2863 3048 -224 21 71 0 0 chr12 39028692 39028734 -104757721 + AT_rich Low_complexity Low_complexity 1 42 0 1384 144 0 0 chr12 39028927 39029121 -104757334 + AluSq SINE Alu 1 194 -119 395 189 81 34 chr12 39029132 39029280 -104757175 + L1ME LINE L1 5121 5275 -871 418 144 43 214 chr12 39029393 39029615 -104756840 + L1ME LINE L1 5546 5726 -440 550 207 7 7 chr12 39029624 39029769 -104756686 + L1MA10 LINE L1 6190 6334 0 452 311 53 0 chr12 39029769 39029978 -104756477 + L1MC/D LINE L1 5602 5821 -1987 948 118 0 0 chr12 39029981 39030108 -104756347 - AluSq/x SINE Alu -185 127 1 26 0 0 0 chr12 39030212 39030238 -104756217 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr12 39030882 39030904 -104755551 + AT_rich Low_complexity Low_complexity 1 22 0 518 160 4 6 chr12 39030907 39031151 -104755304 + AluSx SINE Alu 1 299 -13 185 280 20 0 chr12 39031726 39031776 -104754679 + L2 LINE L2 3221 3271 -1 287 292 73 21 chr12 39032078 39032174 -104754281 - MIR SINE MIR -96 166 66 434 274 96 17 chr12 39032327 39032547 -104753908 - L1M4 LINE L1 -2969 3177 2976 1539 175 88 12 chr12 39032547 39032867 -104753588 + MER2 DNA MER2_type 1 344 0 434 274 96 17 chr12 39032867 39033054 -104753401 - L1M4 LINE L1 -3170 2976 2738 546 37 37 0 chr12 39033409 39033490 -104752965 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 675 201 36 22 chr12 39033920 39034059 -104752396 - FLAM_C SINE Alu -2 141 1 524 209 76 13 chr12 39034174 39034332 -104752123 - L1MD3 LINE L1 0 7995 7828 2332 102 0 0 chr12 39035012 39035315 -104751140 - AluSq SINE Alu -10 303 1 243 0 0 0 chr12 39035811 39035838 -104750617 + (TG)n Simple_repeat Simple_repeat 1 27 0 399 317 79 45 chr12 39035880 39036322 -104750133 - ERVL LTR ERVL -397 5367 4911 274 259 78 26 chr12 39036379 39036495 -104749960 - ERVL LTR ERVL -994 4770 4649 2337 110 0 0 chr12 39036659 39036959 -104749496 + AluSq SINE Alu 1 300 -13 27 65 0 0 chr12 39037190 39037221 -104749234 + AT_rich Low_complexity Low_complexity 1 31 0 227 257 27 14 chr12 39037845 39037919 -104748536 - MLT1I LTR MaLR -24 385 311 359 174 67 15 chr12 39037979 39038083 -104748372 - MLT1J2 LTR MaLR -237 172 67 437 308 73 30 chr12 39038208 39038442 -104748013 - MIR SINE MIR -1 261 18 378 61 0 0 chr12 39038755 39038804 -104747651 + (TG)n Simple_repeat Simple_repeat 2 50 0 285 204 139 109 chr12 39039193 39039235 -104747220 - L1MC5 LINE L1 -268 7693 7654 1841 160 35 0 chr12 39039235 39039522 -104746933 + AluSx SINE Alu 1 297 -15 285 204 139 109 chr12 39039522 39039945 -104746510 - L1MC5 LINE L1 -307 7654 7214 735 221 31 81 chr12 39040129 39040487 -104745968 - L1MC5 LINE L1 -861 7100 6761 2219 138 161 4 chr12 39040996 39041467 -104744988 - LTR10A LTR ERV1 -63 546 2 9665 235 14 28 chr12 39041544 39043998 -104742457 - LTR10A-int LTR ERV1 -2 6647 4229 254 179 0 18 chr12 39043998 39044054 -104742401 - HERVI LTR ERV1 -2478 5307 5253 * 4866 262 18 33 chr12 39044051 39045930 -104740525 - HERVI LTR ERV1 -2712 4114 3169 2173 89 7 14 chr12 39045930 39046222 -104740233 - AluY SINE Alu -21 290 1 4866 262 18 33 chr12 39046222 39046801 -104739654 - HERVI LTR ERV1 -3657 3169 2583 2415 246 81 80 chr12 39046779 39048180 -104738275 - HERVI LTR ERV1 -5244 1405 3 * 2354 116 156 8 chr12 39048195 39048669 -104737786 - LTR10A LTR ERV1 -64 545 2 333 304 62 17 chr12 39049091 39049384 -104737071 + L1ME LINE L1 5353 5658 -463 2315 89 0 22 chr12 39049384 39049697 -104736758 + AluY SINE Alu 1 306 -5 251 273 91 28 chr12 39049698 39049841 -104736614 + L1ME LINE L1 5641 5792 -378 408 228 64 29 chr12 39050682 39050853 -104735602 - L1MC5 LINE L1 -50 7911 7735 19166 139 40 18 chr12 39050888 39054303 -104732152 + L1M1 LINE L1 19 3509 -4056 216 241 0 89 chr12 39054458 39054537 -104731918 + MIR SINE MIR 124 195 -67 22 0 0 0 chr12 39054699 39054721 -104731734 + AT_rich Low_complexity Low_complexity 1 22 0 239 295 45 36 chr12 39055058 39055170 -104731285 + MIR3 SINE MIR 85 197 -11 25 31 0 0 chr12 39055925 39055957 -104730498 + AT_rich Low_complexity Low_complexity 1 32 0 518 309 34 11 chr12 39057774 39057952 -104728503 + MIR SINE MIR 56 237 -25 391 384 50 0 chr12 39058803 39059045 -104727410 - MIR SINE MIR -7 255 2 3243 223 70 8 chr12 39059578 39060636 -104725819 + L1MA3 LINE L1 2253 3375 -2771 6874 138 13 2 chr12 39060780 39062846 -104723609 + L1MA3 LINE L1 4019 6107 -198 500 75 12 0 chr12 39063064 39063144 -104723311 + L1MA1 LINE L1 6222 6302 0 1915 167 10 0 chr12 39063294 39063599 -104722856 - AluJb SINE Alu -4 308 1 247 179 0 36 chr12 39064530 39064586 -104721869 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 1215 340 43 28 chr12 39064659 39065615 -104720840 - ERVL LTR ERVL -3173 2591 1622 1081 189 76 76 chr12 39066029 39066164 -104720291 + MER2 DNA MER2_type 1 135 -209 1948 155 3 7 chr12 39066164 39066473 -104719982 - AluJo SINE Alu -4 308 1 1081 189 76 76 chr12 39066473 39066681 -104719774 + MER2 DNA MER2_type 134 344 0 300 161 18 0 chr12 39067375 39067431 -104719024 - LTR67 LTR ERVL -17 540 484 230 256 51 0 chr12 39067431 39067449 -104719006 - MLT1K LTR MaLR -15 569 492 226 346 90 0 chr12 39068212 39068290 -104718165 - MER5B DNA MER1_type 0 178 94 260 239 130 22 chr12 39068305 39068397 -104718058 - MER91C DNA MER1_type -22 118 17 354 294 152 68 chr12 39070633 39070873 -104715582 + L3 LINE CR1 293 564 -1013 3188 122 32 14 chr12 39070873 39071375 -104715080 + MER9 LTR ERVK 1 511 0 354 294 152 68 chr12 39071375 39071430 -104715025 + L3 LINE CR1 564 613 -964 346 377 181 4 chr12 39071486 39071767 -104714688 - L2 LINE L2 -9 3263 2933 38 51 0 0 chr12 39071815 39071874 -104714581 + AT_rich Low_complexity Low_complexity 1 59 0 287 227 45 0 chr12 39072417 39072571 -104713884 + (CA)n Simple_repeat Simple_repeat 2 162 0 384 226 33 104 chr12 39072779 39072907 -104713548 + MLT1E1 LTR MaLR 98 233 -360 746 201 29 17 chr12 39072907 39072992 -104713463 - L1PB4 LINE L1 0 6156 6073 2184 118 27 18 chr12 39072992 39073323 -104713132 + MER1B DNA MER1_type 1 334 -3 746 201 29 17 chr12 39073323 39073411 -104713044 - L1PB4 LINE L1 -83 6073 5981 384 226 33 104 chr12 39073411 39073516 -104712939 + MLT1E1 LTR MaLR 233 408 -185 762 167 14 0 chr12 39073517 39073655 -104712800 - MER41A LTR ERV1 0 554 415 3215 148 8 4 chr12 39073823 39074344 -104712111 - MER41B LTR ERV1 -109 526 4 718 194 31 31 chr12 39074375 39074535 -104711920 + MLT1E1 LTR MaLR 495 654 0 1232 140 0 0 chr12 39074819 39075019 -104711436 + L1PB1 LINE L1 1 200 -6663 9256 98 28 8 chr12 39075021 39076948 -104709507 + L1PB1 LINE L1 636 2760 -4103 6243 153 46 4 chr12 39076931 39078604 -104707851 + L1PB1 LINE L1 5111 6865 -2 * 24 0 0 0 chr12 39078604 39078628 -104707827 + AT_rich Low_complexity Low_complexity 1 24 0 216 333 40 0 chr12 39078806 39078881 -104707574 - L2 LINE L2 -558 2756 2679 256 164 55 0 chr12 39078899 39078954 -104707501 - L1MA7 LINE L1 -8 6283 6226 440 198 123 130 chr12 39079189 39079513 -104706942 - LTR37A LTR ERV1 -21 405 84 1985 97 86 0 chr12 39079584 39079863 -104706592 - AluSg SINE Alu -7 303 1 3775 166 24 24 chr12 39079934 39080656 -104705799 - MER50 LTR ERV1 -12 722 1 362 328 57 16 chr12 39081510 39081632 -104704823 - L2 LINE L2 -8 3264 3138 22 0 0 0 chr12 39082167 39082189 -104704266 + AT_rich Low_complexity Low_complexity 1 22 0 395 301 51 32 chr12 39082440 39082656 -104703799 - LTR33 LTR ERVL 0 521 302 749 243 192 5 chr12 39082786 39083000 -104703455 + MIR SINE MIR 6 259 -3 329 271 127 25 chr12 39083296 39083414 -104703041 + MLT1K LTR MaLR 293 422 -166 2549 165 31 0 chr12 39083476 39083889 -104702566 - MSTB LTR MaLR 0 426 1 182 212 167 15 chr12 39084199 39084265 -104702190 - MIR SINE MIR -89 173 98 2232 123 0 0 chr12 39084265 39084566 -104701889 + AluSg1 SINE Alu 1 301 -8 2159 108 24 0 chr12 39084688 39084985 -104701470 + AluSp SINE Alu 1 304 -9 237 306 12 17 chr12 39085119 39085292 -104701163 + (TA)n Simple_repeat Simple_repeat 1 172 0 221 364 125 0 chr12 39085633 39085721 -104700734 - L2 LINE L2 0 3272 3174 2243 122 0 51 chr12 39086728 39087082 -104699373 - MER1B DNA MER1_type -1 336 1 223 141 16 141 chr12 39087284 39087348 -104699107 + MIR3 SINE MIR 144 199 -9 871 131 22 7 chr12 39088368 39088505 -104697950 - AluJo SINE Alu -173 139 1 22 35 0 0 chr12 39089776 39089805 -104696650 + AT_rich Low_complexity Low_complexity 1 29 0 676 181 68 17 chr12 39090532 39090709 -104695746 - MER53 DNA DNA -1 188 3 896 101 0 8 chr12 39091410 39091576 -104694879 + AluYa5 SINE Alu 155 319 0 2294 117 114 5 chr12 39091728 39092114 -104694341 + MSTA LTR MaLR 1 428 0 30 27 0 0 chr12 39092279 39092316 -104694139 + AT_rich Low_complexity Low_complexity 1 37 0 1417 149 64 73 chr12 39093177 39093505 -104692950 - MER2 DNA MER2_type -12 333 9 481 255 69 7 chr12 39093507 39093652 -104692803 - MIR SINE MIR -6 256 103 452 317 48 43 chr12 39095352 39095538 -104690917 - MIR3 SINE MIR -12 196 10 14978 179 21 11 chr12 39095993 39096910 -104689545 - L1PB1 LINE L1 -1 6866 5960 2194 121 3 3 chr12 39096910 39097215 -104689240 - AluSc SINE Alu -4 305 1 14978 179 21 11 chr12 39097215 39100184 -104686271 - L1PB1 LINE L1 -907 5960 2657 2048 138 7 0 chr12 39100184 39100481 -104685974 - AluY SINE Alu -12 299 1 14978 179 21 11 chr12 39100481 39102522 -104683933 - L1PB1 LINE L1 -4210 2657 639 1134 157 0 0 chr12 39102520 39102717 -104683738 - L1PB1 LINE L1 -6666 197 1 * 2085 137 0 0 chr12 39102806 39103106 -104683349 + AluSc SINE Alu 1 300 -9 287 221 13 26 chr12 39103314 39103391 -104683064 + MLT1J2 LTR MaLR 345 420 -30 21 0 0 0 chr12 39104028 39104049 -104682406 + AT_rich Low_complexity Low_complexity 1 21 0 391 384 54 17 chr12 39104726 39105189 -104681266 - L2 LINE L2 -404 2910 2431 522 289 91 45 chr12 39105235 39105588 -104680867 + MLT1A2 LTR MaLR 6 374 0 345 280 67 36 chr12 39105599 39105792 -104680663 - L2 LINE L2 -931 2383 2185 2730 248 80 70 chr12 39105817 39107167 -104679288 - L2 LINE L2 -1 3312 1956 2293 86 3 7 chr12 39107188 39107490 -104678965 + AluY SINE Alu 1 301 -10 2307 228 42 19 chr12 39107499 39108069 -104678386 - MER119 DNA MER1_type 0 583 1 312 263 10 30 chr12 39108240 39108339 -104678116 - L2 LINE L2 -1431 1883 1787 485 238 59 123 chr12 39109064 39109150 -104677305 + L2 LINE L2 2995 3085 -228 2149 163 75 5 chr12 39109150 39109548 -104676907 + MSTB LTR MaLR 1 426 0 485 238 59 123 chr12 39109548 39109802 -104676653 + L2 LINE L2 3085 3313 0 335 226 54 54 chr12 39110956 39111049 -104675406 - L1MC2 LINE L1 -28 6316 6224 1365 143 0 0 chr12 39111080 39111304 -104675151 + L1 LINE L1 3348 3571 -2575 2122 147 16 0 chr12 39111307 39111681 -104674774 + L1 LINE L1 3454 3833 -2313 289 79 5 5 chr12 39111695 39111898 -104674557 + AluSp SINE Alu 1 298 -5 251 266 0 0 chr12 39111901 39111965 -104674490 + L1 LINE L1 3841 3904 -2242 * 5121 174 29 18 chr12 39111962 39112944 -104673511 + L1 LINE L1 4315 5312 -834 2112 112 7 0 chr12 39112944 39113231 -104673224 + AluSg SINE Alu 1 289 -21 5121 174 29 18 chr12 39113231 39113325 -104673130 + L1 LINE L1 5312 5403 -743 230 130 65 0 chr12 39113332 39113378 -104673077 - L1MC2 LINE L1 -2517 5525 5477 349 243 19 19 chr12 39113439 39113546 -104672909 + GA-rich Low_complexity Low_complexity 1 107 0 1765 151 55 27 chr12 39113599 39113964 -104672491 + THE1C LTR MaLR 1 375 0 321 26 0 0 chr12 39114250 39114288 -104672167 + (TA)n Simple_repeat Simple_repeat 1 38 0 395 253 68 39 chr12 39115374 39115655 -104670800 + L1M4 LINE L1 4423 4711 -1435 255 152 0 0 chr12 39115686 39115732 -104670723 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 24 0 0 0 chr12 39115732 39115756 -104670699 + AT_rich Low_complexity Low_complexity 1 24 0 1265 224 59 11 chr12 39116600 39116886 -104669569 + AluJo SINE Alu 1 300 -12 732 157 20 169 chr12 39116987 39117235 -104669220 + AluJb SINE Alu 1 211 -101 2226 117 0 0 chr12 39117339 39117646 -104668809 + AluSg SINE Alu 1 307 -3 1384 205 85 20 chr12 39118273 39118614 -104667841 + MLT1A1 LTR MaLR 2 364 -1 247 127 64 9 chr12 39118638 39118748 -104667707 + (TA)n Simple_repeat Simple_repeat 2 117 0 2663 149 0 48 chr12 39119074 39119570 -104666885 - L1MA7 LINE L1 -386 5905 5434 272 118 59 0 chr12 39119572 39119623 -104666832 + L1MA7 LINE L1 6237 6290 -1 222 171 0 0 chr12 39119791 39119832 -104666623 + CT-rich Low_complexity Low_complexity 3 43 0 407 318 110 12 chr12 39120676 39120849 -104665606 + L2 LINE L2 3083 3272 0 312 91 0 0 chr12 39120977 39121021 -104665434 + (TG)n Simple_repeat Simple_repeat 1 44 0 28 0 0 0 chr12 39121785 39121813 -104664642 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr12 39122127 39122152 -104664303 + AT_rich Low_complexity Low_complexity 1 25 0 232 347 54 12 chr12 39123814 39123979 -104662476 - MIR SINE MIR -65 143 20 2244 113 0 0 chr12 39124275 39124576 -104661879 + AluSg SINE Alu 1 301 -9 393 309 41 0 chr12 39124648 39124771 -104661684 - MIR SINE MIR -88 174 47 232 281 0 0 chr12 39125148 39125205 -104661250 + Charlie2 DNA MER1_type 25 81 -2701 377 247 10 41 chr12 39125238 39125335 -104661120 - L1MC/D LINE L1 -2205 5603 5510 270 153 0 0 chr12 39126489 39126548 -104659907 + T-rich Low_complexity Low_complexity 1 59 0 1010 25 0 0 chr12 39126551 39126671 -104659784 - L1PA4 LINE L1 -3 6152 6033 21 82 0 0 chr12 39128250 39128299 -104658156 + AT_rich Low_complexity Low_complexity 1 49 0 226 214 0 0 chr12 39128696 39128738 -104657717 + (TGG)n Simple_repeat Simple_repeat 2 43 0 2348 108 0 0 chr12 39129716 39130023 -104656432 + AluSc SINE Alu 1 307 -2 270 0 0 0 chr12 39130447 39130477 -104655978 + (TA)n Simple_repeat Simple_repeat 1 30 0 846 260 154 9 chr12 39130728 39131066 -104655389 + MLT1H1 LTR MaLR 1 387 -168 44 56 0 0 chr12 39132117 39132189 -104654266 + AT_rich Low_complexity Low_complexity 1 72 0 227 235 265 10 chr12 39132431 39132529 -104653926 - MIR SINE MIR -56 206 84 2350 50 7 0 chr12 39132615 39132897 -104653558 + AluY SINE Alu 24 307 -4 608 275 44 6 chr12 39133051 39133211 -104653244 - MER5B DNA MER1_type -12 166 1 2108 107 0 7 chr12 39133681 39133990 -104652465 - AluSg SINE Alu 0 307 1 2178 111 0 29 chr12 39136468 39136775 -104649680 - AluSg SINE Alu -12 298 1 38942 48 1 10 chr12 39137811 39142712 -104643743 - L1P LINE L1 -1274 4872 13 849 231 58 0 chr12 39142841 39143084 -104643371 + L1 LINE L1 2680 2936 -3210 2515 249 117 25 chr12 39143085 39145086 -104641369 - L1 LINE L1 -3365 3017 971 829 157 0 39 chr12 39145086 39145239 -104641216 - MSTB LTR MaLR -279 147 1 599 237 40 109 chr12 39145965 39146286 -104640169 + AluJo SINE Alu 1 299 -3 3047 99 31 179 chr12 39146654 39147389 -104639066 + MER51A LTR ERV1 1 642 -15 2101 135 0 0 chr12 39147798 39148102 -104638353 - AluSx SINE Alu -8 304 1 31 0 0 0 chr12 39148136 39148167 -104638288 + AT_rich Low_complexity Low_complexity 1 31 0 1847 105 54 37 chr12 39148523 39148818 -104637637 - AluSg SINE Alu 0 310 11 319 172 81 0 chr12 39149522 39149609 -104636846 + AluJb SINE Alu 85 178 -124 1016 190 22 0 chr12 39149892 39150076 -104636379 + MER5A DNA MER1_type 2 189 0 427 228 11 11 chr12 39150524 39150616 -104635839 + MIR SINE MIR 56 147 -115 526 293 163 30 chr12 39150630 39150900 -104635555 + L2 LINE L2 3008 3313 0 27 29 0 0 chr12 39151061 39151095 -104635360 + AT_rich Low_complexity Low_complexity 1 34 0 613 285 5 15 chr12 39151432 39151632 -104634823 - L2 LINE L2 -1628 1686 1489 5677 246 61 39 chr12 39151722 39152672 -104633783 - L1M4c LINE L1 -4586 2373 1445 369 0 0 0 chr12 39152672 39152713 -104633742 + (TG)n Simple_repeat Simple_repeat 2 42 0 5677 246 61 39 chr12 39152713 39154004 -104632451 - L1M4c LINE L1 -5514 1445 102 1916 92 136 27 chr12 39154045 39154383 -104632072 + MER51B LTR ERV1 1 375 -2 24 0 0 0 chr12 39154860 39154884 -104631571 + AT_rich Low_complexity Low_complexity 1 24 0 812 264 5 10 chr12 39155069 39155262 -104631193 - MER41D LTR ERV1 -1 556 365 516 244 94 37 chr12 39155682 39155876 -104630579 + Charlie8 DNA MER1_type 20 241 -100 343 101 101 114 chr12 39155876 39155955 -104630500 - MADE1 DNA Mariner 0 80 3 516 244 94 37 chr12 39155955 39156004 -104630451 + Charlie8 DNA MER1_type 241 286 -55 2228 70 40 7 chr12 39156252 39156553 -104629902 + AluY SINE Alu 1 311 0 2105 106 0 0 chr12 39156869 39157152 -104629303 - AluSx SINE Alu -10 302 20 2470 58 10 10 chr12 39157170 39157480 -104628975 - AluY SINE Alu -1 310 1 2054 106 7 17 chr12 39158344 39158646 -104627809 - AluY SINE Alu -12 299 1 315 314 35 0 chr12 39159169 39159255 -104627200 + L3 LINE CR1 1393 1481 -96 1688 195 0 10 chr12 39160114 39160406 -104626049 + AluJo SINE Alu 1 289 -23 23 0 0 0 chr12 39161331 39161354 -104625101 + AT_rich Low_complexity Low_complexity 1 23 0 386 316 62 34 chr12 39162107 39162284 -104624171 - MIR3 SINE MIR -11 197 16 22 0 0 0 chr12 39162568 39162590 -104623865 + AT_rich Low_complexity Low_complexity 1 22 0 217 241 0 89 chr12 39162751 39162830 -104623625 - MIR SINE MIR -67 195 124 270 56 0 0 chr12 39163168 39163204 -104623251 + (TG)n Simple_repeat Simple_repeat 1 36 0 2595 272 109 28 chr12 39164070 39165233 -104621222 - L2 LINE L2 -1223 2091 835 1331 129 214 15 chr12 39165385 39165656 -104620799 + L1MC3 LINE L1 5445 5769 -2226 4414 179 111 30 chr12 39165657 39166673 -104619782 + L1MC3 LINE L1 6678 7776 -9 280 288 54 9 chr12 39167115 39167226 -104619229 - L2 LINE L2 -5 3308 3193 698 203 0 30 chr12 39167910 39168043 -104618412 + FLAM_C SINE Alu 3 131 -12 38893 47 5 8 chr12 39169206 39174092 -104612363 + L1P LINE L1 2 4872 -1274 2178 111 0 29 chr12 39175128 39175435 -104611020 + AluSg SINE Alu 1 298 -12 2109 107 0 7 chr12 39177913 39178222 -104608233 + AluSg SINE Alu 1 307 0 608 275 44 6 chr12 39178691 39178851 -104607604 + MER5B DNA MER1_type 1 166 -12 2350 50 7 0 chr12 39179005 39179287 -104607168 - AluY SINE Alu -4 307 24 242 246 305 8 chr12 39179373 39179491 -104606964 + MIR SINE MIR 84 236 -26 190 403 0 0 chr12 39181583 39181645 -104604810 + L2 LINE L2 3125 3186 -86 548 296 61 38 chr12 39181743 39181998 -104604457 + L1MC/D LINE L1 3804 4052 -2094 823 212 12 18 chr12 39181998 39182163 -104604292 + FRAM SINE Alu 1 164 -2 548 296 61 38 chr12 39182163 39183050 -104603405 + L1MC/D LINE L1 4052 5051 -1095 329 281 31 23 chr12 39183090 39183218 -104603237 + L1MC/D LINE L1 5122 5250 -896 307 288 65 6 chr12 39183239 39183409 -104603046 + L1MC/D LINE L1 5309 5488 -2320 2465 31 0 0 chr12 39183479 39183773 -104602682 - L1PA4 LINE L1 -2 6153 5860 292 263 26 174 chr12 39184082 39184272 -104602183 + L2 LINE L2 3109 3270 -2 291 326 37 37 chr12 39184280 39184415 -104602040 + L3b LINE CR1 1253 1387 -196 587 261 114 0 chr12 39185481 39185665 -104600790 + MIR SINE MIR 2 206 -56 42 89 0 0 chr12 39185665 39185777 -104600678 + AT_rich Low_complexity Low_complexity 1 112 0 1750 204 53 71 chr12 39186951 39187068 -104599387 + MLT1D LTR MaLR 1 119 -386 2486 122 2 17 chr12 39187068 39187470 -104598985 + L1MA5A LINE L1 5901 6296 -1 1750 204 53 71 chr12 39187470 39187862 -104598593 + MLT1D LTR MaLR 119 501 -4 2050 165 44 0 chr12 39188070 39188475 -104597980 + L1MA8 LINE L1 5853 6275 -16 2273 93 28 0 chr12 39188516 39188807 -104597648 - AluSc SINE Alu -10 299 1 14923 122 27 10 chr12 39188883 39191258 -104595197 + Tigger1 DNA MER2_type 1 2417 -1 1620 173 13 51 chr12 39191593 39191721 -104594734 + AluJo SINE Alu 1 132 -180 225 0 0 0 chr12 39191721 39191746 -104594709 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1620 173 13 51 chr12 39191746 39191930 -104594525 + AluJo SINE Alu 132 301 -11 21 36 0 0 chr12 39193230 39193258 -104593197 + AT_rich Low_complexity Low_complexity 1 28 0 533 330 101 68 chr12 39194415 39194918 -104591537 + L2 LINE L2 1802 2321 -993 221 348 43 26 chr12 39195826 39195941 -104590514 - L2 LINE L2 -2 3311 3195 1643 260 109 47 chr12 39195999 39196252 -104590203 + L2 LINE L2 2400 2636 -677 476 272 59 24 chr12 39196252 39196421 -104590034 + MER69A DNA AcHobo 3 177 0 1643 260 109 47 chr12 39196421 39197007 -104589448 + L2 LINE L2 2636 3301 -12 187 250 155 103 chr12 39197422 39197538 -104588917 - MIR SINE MIR -70 138 17 319 306 145 7 chr12 39197790 39198094 -104588361 + L1MC4a LINE L1 4525 4870 -1276 1372 217 51 51 chr12 39198186 39198559 -104587896 + MLT1A2 LTR MaLR 2 374 0 338 296 106 37 chr12 39198791 39199304 -104587151 + L1MC4a LINE L1 5282 5849 -297 21910 146 38 10 chr12 39200374 39204221 -104582234 + L1MA2 LINE L1 17 3971 -3594 6370 146 19 7 chr12 39204398 39206506 -104579949 + L1MA2 LINE L1 5596 7719 -4 23 0 0 0 chr12 39206793 39206816 -104579639 + AT_rich Low_complexity Low_complexity 1 23 0 34 65 0 0 chr12 39206854 39206916 -104579539 + AT_rich Low_complexity Low_complexity 1 62 0 335 323 30 23 chr12 39207878 39208011 -104578444 + MIR SINE MIR 26 159 -103 394 284 269 47 chr12 39208012 39208161 -104578294 - L2 LINE L2 0 3313 3198 2453 55 0 16 chr12 39208161 39208473 -104577982 + AluY SINE Alu 1 307 -4 394 284 269 47 chr12 39208473 39208749 -104577706 - L2 LINE L2 -115 3198 2798 2032 298 135 47 chr12 39208953 39210431 -104576024 - L2 LINE L2 -560 2754 1147 435 282 34 27 chr12 39210753 39210902 -104575553 + MER5B DNA MER1_type 28 177 -1 2539 119 22 44 chr12 39211507 39211961 -104574494 + MER65A LTR ERV1 2 445 0 24 0 0 0 chr12 39212003 39212027 -104574428 + AT_rich Low_complexity Low_complexity 1 24 0 237 344 64 38 chr12 39212281 39212438 -104574017 - MIR SINE MIR -73 189 29 22 0 0 0 chr12 39213292 39213314 -104573141 + AT_rich Low_complexity Low_complexity 1 22 0 313 205 46 133 chr12 39213329 39213480 -104572975 - MIR SINE MIR 0 262 125 774 209 6 6 chr12 39213571 39213729 -104572726 + Tigger1 DNA MER2_type 1 158 -2260 * 1169 130 48 5 chr12 39213718 39213925 -104572530 + Tigger1 DNA MER2_type 2203 2418 0 6739 137 35 22 chr12 39214162 39215117 -104571338 + Tigger3b DNA MER2_type 1 976 -2052 2243 95 3 0 chr12 39215117 39215411 -104571044 - AluSc SINE Alu -14 295 1 6739 137 35 22 chr12 39215411 39215671 -104570784 + Tigger3b DNA MER2_type 976 1231 0 348 155 17 0 chr12 39215691 39215749 -104570706 + MLT2F LTR ERVL 1 59 -604 413 128 139 23 chr12 39215796 39215882 -104570573 + MLT2F LTR ERVL 565 660 -3 22 0 0 0 chr12 39216865 39216887 -104569568 + AT_rich Low_complexity Low_complexity 1 22 0 3267 149 68 102 chr12 39219203 39219403 -104567052 + LTR39 LTR ERV1 1 206 -577 2140 131 7 0 chr12 39219403 39219701 -104566754 + AluSq SINE Alu 1 300 -13 3267 149 68 102 chr12 39219701 39220221 -104566234 + LTR39 LTR ERV1 206 692 -91 2069 93 65 0 chr12 39220221 39220499 -104565956 - AluSq SINE Alu -17 296 1 3267 149 68 102 chr12 39220499 39220587 -104565868 + LTR39 LTR ERV1 692 782 -1 269 311 114 23 chr12 39220623 39220755 -104565700 + L2 LINE L2 2918 3061 -211 23 33 0 0 chr12 39220929 39220959 -104565496 + AT_rich Low_complexity Low_complexity 1 30 0 1784 176 0 3 chr12 39221025 39221314 -104565141 + AluJo SINE Alu 1 288 -24 198 0 0 0 chr12 39221320 39221342 -104565113 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 208 305 125 23 chr12 39221352 39221480 -104564975 - MIR3 SINE MIR -64 144 4 198 305 32 42 chr12 39222314 39222409 -104564046 + MIR SINE MIR 20 113 -95 245 335 31 56 chr12 39223421 39223582 -104562873 - MIR SINE MIR -78 184 28 2122 138 0 0 chr12 39223825 39224121 -104562334 + AluSx SINE Alu 3 298 -14 2400 95 0 0 chr12 39224253 39224549 -104561906 + AluSx SINE Alu 3 298 -14 562 205 18 0 chr12 39226051 39226163 -104560292 + MER94 DNA DNA 1 114 -20 398 321 58 22 chr12 39226725 39226949 -104559506 + L2 LINE L2 3075 3306 -7 338 296 222 24 chr12 39227329 39227549 -104558906 + MIR SINE MIR 1 259 -3 22 0 0 0 chr12 39227946 39227968 -104558487 + AT_rich Low_complexity Low_complexity 1 22 0 2236 53 11 25 chr12 39228049 39228331 -104558124 + AluY SINE Alu 21 298 -13 36 0 0 0 chr12 39228625 39228661 -104557794 + AT_rich Low_complexity Low_complexity 1 36 0 281 268 37 0 chr12 39229120 39229202 -104557253 + MER102a DNA MER1_type 235 319 -11 2388 108 0 3 chr12 39229582 39229896 -104556559 + AluSq SINE Alu 1 313 0 2285 85 0 3 chr12 39230384 39230677 -104555778 - AluSx SINE Alu -20 292 1 499 156 0 115 chr12 39231000 39231122 -104555333 + MER2 DNA MER2_type 1 108 -237 350 100 100 0 chr12 39231123 39231183 -104555272 + MER4A LTR ERV1 33 98 -566 1609 132 5 77 chr12 39231183 39231555 -104554900 + MER4A LTR ERV1 261 664 0 510 133 64 92 chr12 39231719 39231892 -104554563 - MER33 DNA MER1_type -1 362 195 204 107 36 83 chr12 39231918 39232002 -104554453 + (TATAA)n Simple_repeat Simple_repeat 3 82 0 384 232 0 0 chr12 39232041 39232123 -104554332 - MER33 DNA MER1_type -242 82 1 303 306 26 52 chr12 39233227 39233420 -104553035 + L1ME LINE L1 5562 5749 -372 2386 71 0 0 chr12 39233626 39233921 -104552534 + AluY SINE Alu 1 295 -16 192 362 131 39 chr12 39234807 39234909 -104551546 - L2 LINE L2 -456 2858 2767 1401 166 38 25 chr12 39234909 39235229 -104551226 + MER33 DNA MER1_type 1 324 0 192 362 131 39 chr12 39235229 39235757 -104550698 - L2 LINE L2 -547 2767 2289 8045 86 6 1 chr12 39235757 39236823 -104549632 + MER11C LTR ERVK 1 1071 0 192 362 131 39 chr12 39236823 39237015 -104549440 - L2 LINE L2 -1025 2289 2116 2068 134 7 0 chr12 39237015 39237322 -104549133 + AluSp SINE Alu 1 309 -4 192 362 131 39 chr12 39237322 39237340 -104549115 - L2 LINE L2 -1198 2116 1939 794 273 32 5 chr12 39237388 39237575 -104548880 - MIR SINE MIR -52 210 19 1898 132 36 3 chr12 39238250 39238553 -104547902 - AluSq SINE Alu 0 313 1 2013 205 89 0 chr12 39239815 39240288 -104546167 + MER34 LTR ERV1 27 541 -1 321 26 0 0 chr12 39240289 39240327 -104546128 + (CA)n Simple_repeat Simple_repeat 2 39 0 365 249 76 103 chr12 39241579 39241717 -104544738 - MIR SINE MIR -17 245 112 2242 147 39 18 chr12 39241717 39242158 -104544297 + LTR7 LTR ERV1 1 450 0 365 249 76 103 chr12 39242158 39242204 -104544251 - MIR SINE MIR -150 112 66 2247 72 0 44 chr12 39242354 39242672 -104543783 - AluY SINE Alu -7 304 1 1551 194 14 28 chr12 39243688 39243977 -104542478 - AluJo SINE Alu -27 285 1 192 341 133 7 chr12 39246464 39246599 -104539856 + MIR3 SINE MIR 42 193 -15 884 265 215 19 chr12 39246664 39247139 -104539316 + L2 LINE L2 1447 2014 -1300 2346 106 3 0 chr12 39347698 39348009 -104438446 - AluSx SINE Alu 0 312 1 7538 34 0 0 chr12 39349844 39351503 -104434952 + L1PA4 LINE L1 4495 6155 0 2199 111 0 3 chr12 39352327 39352624 -104433831 + AluSx SINE Alu 1 296 -16 4574 121 25 1 chr12 39353248 39354022 -104432433 + Tigger1 DNA MER2_type 1421 2212 -206 2184 151 23 25 chr12 39355177 39355574 -104430881 + MSTD LTR MaLR 1 396 0 34 55 0 0 chr12 39356199 39356254 -104430201 + AT_rich Low_complexity Low_complexity 1 55 0 372 301 108 15 chr12 39356494 39356697 -104429758 - L1ME4a LINE L1 -53 6068 5847 1969 152 7 0 chr12 39356707 39356997 -104429458 + AluSx SINE Alu 7 298 -14 565 189 106 53 chr12 39358565 39358902 -104427553 - MLT1A2 LTR MaLR 0 457 4 1335 235 82 22 chr12 39359390 39359841 -104426614 - L1ME1 LINE L1 -4 6162 5685 395 297 27 0 chr12 39359884 39359995 -104426460 + MIR3 SINE MIR 85 198 -10 1242 251 74 20 chr12 39360240 39360686 -104425769 - LTR38 LTR ERV1 0 556 87 2221 106 3 0 chr12 39360723 39361034 -104425421 - AluSq SINE Alu -1 312 1 221 306 148 79 chr12 39361329 39361721 -104424734 - L2 LINE L2 -545 2769 2351 227 286 0 0 chr12 39362079 39362142 -104424313 + MIR SINE MIR 200 262 0 300 101 14 29 chr12 39363635 39363704 -104422751 + (TTTTA)n Simple_repeat Simple_repeat 4 71 0 2174 100 0 4 chr12 39364556 39364860 -104421595 + AluSg1 SINE Alu 1 303 0 842 159 0 0 chr12 39365005 39365137 -104421318 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr12 39365276 39365297 -104421158 + AT_rich Low_complexity Low_complexity 1 21 0 331 277 245 16 chr12 39365641 39365825 -104420630 + MIR SINE MIR 25 250 -12 22 35 0 0 chr12 39366078 39366107 -104420348 + AT_rich Low_complexity Low_complexity 1 29 0 354 98 0 0 chr12 39367369 39367420 -104419035 + (TG)n Simple_repeat Simple_repeat 2 52 0 300 222 62 0 chr12 39367982 39368063 -104418392 - MLT1J LTR MaLR -108 403 318 2181 147 61 20 chr12 39368128 39368537 -104417918 - MSTB1 LTR MaLR 0 432 7 376 285 186 10 chr12 39368544 39368737 -104417718 - MLT1J LTR MaLR -282 229 3 387 0 0 0 chr12 39369388 39369431 -104417024 + (TG)n Simple_repeat Simple_repeat 2 44 0 705 274 194 15 chr12 39370126 39370528 -104415927 - MLT1J LTR MaLR -37 474 1 183 315 41 27 chr12 39371386 39371459 -104414996 + L2 LINE L2 2982 3055 -258 1635 258 102 15 chr12 39371459 39371997 -104414458 + MLT1E LTR MaLR 1 585 -8 304 264 146 35 chr12 39372616 39372760 -104413695 + MER5A DNA MER1_type 30 189 0 25 0 0 0 chr12 39372780 39372805 -104413650 + AT_rich Low_complexity Low_complexity 1 25 0 1002 148 16 44 chr12 39372811 39372994 -104413461 - AluJo SINE Alu -12 300 123 21 0 0 0 chr12 39374011 39374032 -104412423 + AT_rich Low_complexity Low_complexity 1 21 0 209 223 124 83 chr12 39374211 39374332 -104412123 - L3 LINE CR1 -1 1576 1451 375 250 102 81 chr12 39374580 39374816 -104411639 - MLT1E1 LTR MaLR -218 436 196 236 159 0 23 chr12 39374894 39374938 -104411517 - MLT1E1 LTR MaLR -611 43 1 2381 70 3 10 chr12 39375299 39375601 -104410854 - AluY SINE Alu -11 300 1 212 68 0 68 chr12 39375868 39375912 -104410543 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 710 211 0 8 chr12 39375916 39376049 -104410406 - FLAM_A SINE Alu 0 133 2 2070 102 7 10 chr12 39376357 39376660 -104409795 + AluSx SINE Alu 1 302 -10 902 310 46 3 chr12 39376842 39377126 -104409329 - LTR33 LTR ERVL -223 298 3 2066 129 7 0 chr12 39377280 39377574 -104408881 - AluSg SINE Alu -14 296 1 24 32 0 0 chr12 39380207 39380238 -104406217 + AT_rich Low_complexity Low_complexity 1 31 0 213 200 40 0 chr12 39380395 39380445 -104406010 + (TATG)n Simple_repeat Simple_repeat 4 55 0 22 0 0 0 chr12 39380740 39380762 -104405693 + AT_rich Low_complexity Low_complexity 1 22 0 270 203 159 0 chr12 39380764 39380833 -104405622 - MIR SINE MIR -120 142 63 1300 249 70 38 chr12 39380840 39381286 -104405169 - LTR40c LTR ERVL -5 460 1 578 304 100 7 chr12 39383451 39383721 -104402734 - L2 LINE L2 -553 2761 2467 205 275 225 35 chr12 39384076 39384218 -104402237 - MIR3 SINE MIR -17 191 23 1789 134 44 13 chr12 39384666 39384964 -104401491 - AluSx SINE Alu -5 307 1 321 232 31 88 chr12 39385344 39385394 -104401061 + Charlie7 DNA MER1_type 2430 2481 -131 1998 159 6 37 chr12 39385394 39385747 -104400708 - MER2 DNA MER2_type 0 344 3 321 232 31 88 chr12 39385747 39385890 -104400565 + Charlie7 DNA MER1_type 2481 2612 0 1782 158 0 7 chr12 39387155 39387434 -104399021 - AluSx SINE Alu -22 290 14 1827 163 23 10 chr12 39390590 39390896 -104395559 - AluJb SINE Alu -2 310 1 2516 189 49 79 chr12 39391264 39391973 -104394482 - LTR8 LTR ERV1 0 691 4 2062 144 0 0 chr12 39392591 39392889 -104393566 - AluSx SINE Alu -14 298 1 440 221 87 16 chr12 39393683 39393810 -104392645 - MIR SINE MIR -56 206 71 2221 146 100 3 chr12 39394345 39394735 -104391720 - MSTA LTR MaLR 0 428 1 2300 55 55 3 chr12 39394819 39395110 -104391345 + AluY SINE Alu 1 306 -5 275 233 42 100 chr12 39395867 39395934 -104390521 - L1ME4a LINE L1 -29 6092 6033 2102 118 7 10 chr12 39395934 39396231 -104390224 + AluSx SINE Alu 1 296 -16 275 233 42 100 chr12 39396231 39396283 -104390172 - L1ME4a LINE L1 -88 6033 5980 25 31 0 0 chr12 39396312 39396344 -104390111 + AT_rich Low_complexity Low_complexity 1 32 0 217 214 18 18 chr12 39396747 39396803 -104389652 - MER5C DNA MER1_type -201 123 68 224 273 18 0 chr12 39396911 39396966 -104389489 - MER5C DNA MER1_type -267 57 2 23 33 0 0 chr12 39397222 39397252 -104389203 + AT_rich Low_complexity Low_complexity 1 30 0 191 274 96 0 chr12 39397409 39397482 -104388973 - L2 LINE L2 -614 2700 2621 1650 190 3 0 chr12 39398680 39398991 -104387464 - AluSx SINE Alu 0 312 1 2282 117 0 0 chr12 39399537 39399845 -104386610 - AluSq SINE Alu -5 308 1 774 173 0 15 chr12 39399928 39400061 -104386394 - FLAM_C SINE Alu -2 131 1 361 250 243 29 chr12 39400061 39400195 -104386260 + MIR SINE MIR 22 185 -77 215 295 0 39 chr12 39400233 39400311 -104386144 + CT-rich Low_complexity Low_complexity 1 75 0 513 207 107 0 chr12 39400448 39400569 -104385886 + MIR SINE MIR 123 256 -6 2267 88 0 0 chr12 39401156 39401440 -104385015 - AluSc SINE Alu -14 295 12 21 0 0 0 chr12 39401557 39401578 -104384877 + AT_rich Low_complexity Low_complexity 1 21 0 2075 127 7 3 chr12 39402169 39402468 -104383987 + AluSx SINE Alu 1 300 -12 1994 131 6 34 chr12 39403216 39403537 -104382918 - AluSx SINE Alu 0 312 1 189 0 0 0 chr12 39404174 39404195 -104382260 + (T)n Simple_repeat Simple_repeat 1 21 0 395 336 75 0 chr12 39404279 39404425 -104382030 + MIR SINE MIR 20 176 -86 190 324 99 9 chr12 39404563 39404674 -104381781 + L2 LINE L2 3165 3285 -28 1797 310 176 25 chr12 39404742 39406100 -104380355 - L2 LINE L2 0 3313 1741 2353 90 0 10 chr12 39406115 39406426 -104380029 - AluSc SINE Alu -1 308 1 1028 76 8 0 chr12 39406429 39406560 -104379895 - AluSp SINE Alu -181 132 1 581 326 97 28 chr12 39406598 39406960 -104379495 - L2 LINE L2 -2569 745 359 830 216 113 30 chr12 39407016 39407247 -104379208 - MIR SINE MIR -11 251 2 312 367 35 6 chr12 39407247 39407414 -104379041 - L2 LINE L2 -3019 295 124 1575 178 7 18 chr12 39407867 39408143 -104378312 + AluJb SINE Alu 1 273 -39 465 166 35 0 chr12 39408246 39408415 -104378040 + (TA)n Simple_repeat Simple_repeat 1 175 0 2042 149 0 0 chr12 39408415 39408717 -104377738 - AluSx SINE Alu -10 302 1 1959 150 8 42 chr12 39408753 39409112 -104377343 - MER7A DNA MER2_type 0 346 2 246 205 39 126 chr12 39409125 39409252 -104377203 - L1ME LINE L1 -204 5917 5802 225 0 0 0 chr12 39410028 39410053 -104376402 + (T)n Simple_repeat Simple_repeat 1 25 0 436 321 60 24 chr12 39410727 39410895 -104375560 + MIR3 SINE MIR 30 203 -5 245 175 0 0 chr12 39411226 39411266 -104375189 + L2 LINE L2 3217 3256 -16 1631 177 50 0 chr12 39411920 39412202 -104374253 - AluJb SINE Alu -16 296 1 30 0 0 0 chr12 39412323 39412353 -104374102 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 39413184 39413205 -104373250 + AT_rich Low_complexity Low_complexity 1 21 0 269 219 0 62 chr12 39413205 39413301 -104373154 - L1MC4 LINE L1 -1339 6703 6614 270 176 0 0 chr12 39413302 39413353 -104373102 + (CATATA)n Simple_repeat Simple_repeat 5 55 0 1035 152 0 0 chr12 39413353 39413531 -104372924 + (TA)n Simple_repeat Simple_repeat 2 179 0 2194 95 3 0 chr12 39413531 39413814 -104372641 - AluSx SINE Alu -28 284 1 450 264 40 85 chr12 39414198 39414399 -104372056 - L2 LINE L2 -299 3014 2823 2395 49 0 55 chr12 39414571 39414897 -104371558 + AluY SINE Alu 1 308 -3 241 308 31 0 chr12 39415284 39415349 -104371106 + L2 LINE L2 3241 3307 -6 679 198 96 40 chr12 39416331 39416508 -104369947 - AluJo SINE Alu -7 305 119 1859 171 3 7 chr12 39417392 39417691 -104368764 - AluJb SINE Alu -12 300 3 1872 121 7 34 chr12 39417984 39418282 -104368173 + AluSx SINE Alu 2 291 -21 1817 164 0 32 chr12 39418291 39418602 -104367853 + AluJo SINE Alu 1 301 -11 402 271 181 8 chr12 39418708 39418841 -104367614 - MER5A DNA MER1_type -7 182 27 207 156 0 0 chr12 39419195 39419227 -104367228 + CT-rich Low_complexity Low_complexity 2 33 0 1143 264 28 5 chr12 39419342 39419729 -104366726 - L1ME LINE L1 -3301 3656 3261 1929 185 98 20 chr12 39419764 39420003 -104366452 - MLT1D LTR MaLR 0 505 286 2196 111 3 0 chr12 39420003 39420292 -104366163 + AluSx SINE Alu 7 296 -16 1929 185 98 20 chr12 39420292 39420500 -104365955 - MLT1D LTR MaLR -219 286 23 245 159 0 0 chr12 39420534 39420578 -104365877 - L1ME LINE L1 -3733 3224 3181 1361 220 20 30 chr12 39420586 39420890 -104365565 - AluJb SINE Alu -11 301 1 500 248 78 105 chr12 39420900 39420992 -104365463 - L1ME LINE L1 -4886 2071 1978 1820 141 0 50 chr12 39420992 39421311 -104365144 + AluJo SINE Alu 1 303 -9 500 248 78 105 chr12 39421311 39421628 -104364827 - L1ME LINE L1 -4979 1978 1675 299 204 0 19 chr12 39421628 39421682 -104364773 + MER1B DNA MER1_type 1 53 -284 1966 139 12 40 chr12 39421682 39422005 -104364450 + MER1B DNA MER1_type 26 339 0 334 313 62 22 chr12 39422039 39422218 -104364237 - L1ME LINE L1 -5334 1525 1340 557 237 9 0 chr12 39422456 39422570 -104363885 + MIR SINE MIR 79 193 -69 1092 246 100 126 chr12 39422609 39423362 -104363093 - L2 LINE L2 -1370 1944 1212 26 0 0 0 chr12 39424732 39424758 -104361697 + AT_rich Low_complexity Low_complexity 1 26 0 2100 121 13 0 chr12 39424758 39425056 -104361399 - AluSq SINE Alu -11 302 1 187 268 0 0 chr12 39425824 39425865 -104360590 - MER5A DNA MER1_type 0 189 149 660 234 0 72 chr12 39425866 39426033 -104360422 + FAM SINE Alu 2 156 -19 245 252 252 10 chr12 39426059 39426162 -104360293 + MER5A DNA MER1_type 40 167 -22 534 222 70 65 chr12 39426447 39426632 -104359823 - MIR SINE MIR -57 205 20 405 283 48 48 chr12 39426814 39426959 -104359496 + L2 LINE L2 3128 3272 0 1599 107 27 0 chr12 39427262 39427486 -104358969 + MER30 DNA MER1_type 1 230 0 33 0 0 0 chr12 39427544 39427577 -104358878 + AT_rich Low_complexity Low_complexity 1 33 0 545 181 0 38 chr12 39427597 39427702 -104358753 - FLAM_A SINE Alu -32 110 10 216 361 74 25 chr12 39428996 39429118 -104357337 + L2 LINE L2 3133 3260 -12 530 91 6 9 chr12 39429441 39429540 -104356915 - L1PA11 LINE L1 -302 5849 5752 2203 98 9 0 chr12 39429540 39429855 -104356600 + L1PA11 LINE L1 5855 6173 -1 1170 124 9 52 chr12 39430720 39430930 -104355525 + MER2 DNA MER2_type 6 206 -139 1338 172 26 4 chr12 39430951 39431183 -104355272 - AluJb SINE Alu -73 239 3 22 56 0 0 chr12 39431194 39431230 -104355225 + AT_rich Low_complexity Low_complexity 1 36 0 427 203 0 0 chr12 39431243 39431317 -104355138 + MER2 DNA MER2_type 272 345 0 192 179 0 71 chr12 39431482 39431538 -104354917 + L2 LINE L2 2930 2981 -332 1336 169 0 5 chr12 39431596 39431809 -104354646 - AluJo SINE Alu -100 212 1 276 155 42 0 chr12 39432206 39432277 -104354178 + (TA)n Simple_repeat Simple_repeat 1 74 0 568 294 20 56 chr12 39432975 39433172 -104353283 + MIR SINE MIR 26 215 -47 352 268 165 19 chr12 39433491 39433812 -104352643 - L1ME4a LINE L1 -34 6087 5720 244 321 97 36 chr12 39433813 39434009 -104352446 - MIR SINE MIR -20 242 35 180 152 0 0 chr12 39434107 39434140 -104352315 + GA-rich Low_complexity Low_complexity 2 34 0 21 57 0 0 chr12 39434429 39434464 -104351991 + AT_rich Low_complexity Low_complexity 1 35 0 710 165 0 0 chr12 39434660 39434775 -104351680 + FLAM_C SINE Alu 1 115 -18 182 300 29 43 chr12 39435054 39435124 -104351331 + MIR3 SINE MIR 139 207 -1 1223 150 12 12 chr12 39435723 39435963 -104350492 + L1MB3 LINE L1 5934 6173 -10 21 0 0 0 chr12 39435978 39435999 -104350456 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr12 39436438 39436474 -104349981 + AT_rich Low_complexity Low_complexity 1 36 0 347 313 72 53 chr12 39438259 39438524 -104347931 + MARNA DNA Mariner 260 529 -57 29 0 0 0 chr12 39442464 39442493 -104343962 + AT_rich Low_complexity Low_complexity 1 29 0 537 242 157 7 chr12 39442850 39443003 -104343452 - MER5A DNA MER1_type -6 183 8 294 197 318 23 chr12 39443007 39443139 -104343316 + MIR3 SINE MIR 33 203 -5 486 347 40 0 chr12 39444116 39444266 -104342189 - L2 LINE L2 0 3272 3117 35 33 0 17 chr12 39444575 39444616 -104341839 + AT_rich Low_complexity Low_complexity 1 42 -17 1799 122 8 0 chr12 39444616 39444871 -104341584 - AluSg SINE Alu -21 289 33 35 33 0 17 chr12 39444871 39444889 -104341566 + AT_rich Low_complexity Low_complexity 42 59 0 219 114 0 0 chr12 39446389 39446424 -104340031 + (GGA)n Simple_repeat Simple_repeat 2 36 0 2048 105 10 7 chr12 39448439 39448735 -104337720 - Tigger3b DNA MER2_type -1 1230 934 248 51 0 0 chr12 39448733 39448772 -104337683 - AluSx SINE Alu -4 296 258 * 1519 139 0 0 chr12 39448772 39448988 -104337467 - AluSx SINE Alu -96 216 1 933 143 0 0 chr12 39449006 39449153 -104337302 + Tigger1 DNA MER2_type 1 147 -2271 * 1295 118 14 27 chr12 39449151 39449371 -104337084 + Tigger1 DNA MER2_type 2202 2418 0 * 5023 153 39 8 chr12 39449371 39450274 -104336181 - Tigger3b DNA MER2_type -299 932 1 653 239 33 0 chr12 39450357 39450520 -104335935 - MIR SINE MIR -33 229 61 556 266 53 26 chr12 39451277 39451503 -104334952 + L1ME LINE L1 5557 5790 -331 653 173 0 60 chr12 39451761 39451894 -104334561 + FLAM_C SINE Alu 2 126 -7 2092 146 98 26 chr12 39452296 39452550 -104333905 - L1MB7 LINE L1 -20 6164 5867 2045 103 52 3 chr12 39452550 39452841 -104333614 - AluSx SINE Alu -7 305 1 2092 146 98 26 chr12 39452841 39453003 -104333452 - L1MB7 LINE L1 -317 5867 5718 266 304 88 14 chr12 39453423 39453571 -104332884 - L2 LINE L2 0 3313 3155 210 321 0 19 chr12 39453669 39453722 -104332733 - MIR SINE MIR -164 98 47 2139 126 3 0 chr12 39453722 39454064 -104332391 - AluSx SINE Alu 0 343 1 22 0 0 0 chr12 39454083 39454105 -104332350 + AT_rich Low_complexity Low_complexity 1 22 0 284 231 15 0 chr12 39454387 39454452 -104332003 + MIR SINE MIR 180 245 -17 421 273 36 72 chr12 39456810 39457004 -104329451 - MIR SINE MIR -70 192 6 202 247 21 0 chr12 39458335 39458428 -104328027 + CT-rich Low_complexity Low_complexity 4 98 0 275 244 0 11 chr12 39458460 39458550 -104327905 + CT-rich Low_complexity Low_complexity 2 90 0 478 330 30 97 chr12 39458881 39459345 -104327110 - L2 LINE L2 -3 3269 2837 1561 249 86 25 chr12 39459418 39459940 -104326515 - MER68 LTR ERV1 0 562 9 25 0 0 0 chr12 39460769 39460794 -104325661 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr12 39460865 39460895 -104325560 + AT_rich Low_complexity Low_complexity 1 30 0 23 92 0 0 chr12 39461888 39461953 -104324502 + AT_rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr12 39462316 39462339 -104324116 + AT_rich Low_complexity Low_complexity 1 23 0 2073 91 7 39 chr12 39462343 39462650 -104323805 + AluY SINE Alu 1 297 -14 562 276 13 13 chr12 39463239 39463395 -104323060 - Charlie8 DNA MER1_type -2170 247 92 2338 81 0 0 chr12 39463859 39464155 -104322300 - AluY SINE Alu -15 296 1 248 224 106 35 chr12 39464220 39464305 -104322150 - L2 LINE L2 -36 3277 3187 203 88 29 0 chr12 39464628 39464662 -104321793 + (TTC)n Simple_repeat Simple_repeat 2 36 0 836 186 157 30 chr12 39464681 39464912 -104321543 + MIR SINE MIR 1 262 0 25 0 0 0 chr12 39465396 39465421 -104321034 + AT_rich Low_complexity Low_complexity 1 25 0 254 203 0 16 chr12 39466008 39466072 -104320383 + (TG)n Simple_repeat Simple_repeat 2 64 0 2222 121 7 0 chr12 39467023 39467330 -104319125 - AluSx SINE Alu -3 309 1 795 277 163 27 chr12 39468336 39468853 -104317602 - Charlie7 DNA MER1_type -1940 672 86 2430 44 3 3 chr12 39468987 39469283 -104317172 - AluY SINE Alu -15 296 1 221 66 58 0 chr12 39469442 39469480 -104316975 + MIR SINE MIR 105 145 -63 620 309 57 68 chr12 39473862 39474231 -104312224 - L3 LINE CR1 -219 1358 994 408 344 179 19 chr12 39474377 39474845 -104311610 - L3 LINE CR1 -975 602 60 3546 84 34 4 chr12 39475313 39475848 -104310607 - L1MA2 LINE L1 0 6304 5754 22 35 0 0 chr12 39476601 39476630 -104309825 + AT_rich Low_complexity Low_complexity 1 29 0 610 329 32 20 chr12 39476901 39477147 -104309308 - MIR SINE MIR -1 261 13 21 0 0 0 chr12 39477767 39477788 -104308667 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 39478130 39478153 -104308302 + AT_rich Low_complexity Low_complexity 1 23 0 2089 96 3 64 chr12 39479581 39479894 -104306561 - AluSx SINE Alu -16 296 3 283 288 99 27 chr12 39480064 39480175 -104306280 - L2 LINE L2 -5 3267 3149 26 0 0 0 chr12 39480793 39480819 -104305636 + AT_rich Low_complexity Low_complexity 1 26 0 208 242 30 91 chr12 39481052 39481151 -104305304 - L2 LINE L2 0 3313 3221 525 180 0 0 chr12 39481155 39481244 -104305211 - AluJ/FLAM SINE Alu -223 89 1 233 322 11 0 chr12 39482003 39482090 -104304365 + L1MC4 LINE L1 6618 6705 -1337 906 174 7 7 chr12 39482443 39482592 -104303863 + FAM SINE Alu 10 158 -27 2245 111 0 0 chr12 39482593 39482899 -104303556 - AluSx SINE Alu -6 306 1 227 263 0 0 chr12 39483241 39483298 -104303157 + T-rich Low_complexity Low_complexity 4 60 0 285 301 110 72 chr12 39483491 39483727 -104302728 - L2 LINE L2 -943 2371 2127 200 160 10 90 chr12 39484476 39484524 -104301931 + A-rich Low_complexity Low_complexity 2 40 -53 866 198 24 0 chr12 39484524 39484691 -104301764 + FAM SINE Alu 5 175 0 200 160 10 90 chr12 39484691 39484742 -104301713 + A-rich Low_complexity Low_complexity 39 93 0 684 236 157 21 chr12 39486955 39487235 -104299220 - L2 LINE L2 0 3313 2996 5899 102 13 4 chr12 39487863 39488848 -104297607 - L1PA14 LINE L1 -1 6160 5165 732 212 0 20 chr12 39488983 39489129 -104297326 - MIR SINE MIR -5 257 115 1415 306 65 28 chr12 39489146 39489993 -104296462 - L1MEc LINE L1 -5484 912 35 302 149 0 0 chr12 39489996 39490043 -104296412 + L2 LINE L2 2328 2374 -940 29 47 0 0 chr12 39490078 39490121 -104296334 + AT_rich Low_complexity Low_complexity 1 43 0 4483 16 2 0 chr12 39490249 39490763 -104295692 - L1PA3 LINE L1 -17 6138 5624 1603 302 89 23 chr12 39490763 39491569 -104294886 + L2 LINE L2 2358 3224 -89 23 33 0 0 chr12 39491572 39491602 -104294853 + AT_rich Low_complexity Low_complexity 1 30 0 2322 81 0 3 chr12 39491613 39491910 -104294545 + AluY SINE Alu 1 296 -15 198 0 0 0 chr12 39491934 39491956 -104294499 + (T)n Simple_repeat Simple_repeat 1 22 0 2061 96 27 23 chr12 39491988 39492289 -104294166 + AluSc SINE Alu 5 306 -3 285 189 57 0 chr12 39492295 39492348 -104294107 + L2 LINE L2 3214 3269 -3 205 299 279 7 chr12 39492423 39492577 -104293878 + MIR3 SINE MIR 1 196 -12 624 243 133 26 chr12 39493076 39493302 -104293153 + MIR SINE MIR 13 262 0 7222 44 6 4 chr12 39494000 39494911 -104291544 - L1P LINE L1 -1926 4220 3309 * 20974 64 1 0 chr12 39494879 39497532 -104288923 - L1P LINE L1 -3489 2657 4 272 91 91 0 chr12 39498491 39498535 -104287920 - MLT2C1 LTR ERVL 0 397 350 246 62 0 0 chr12 39498542 39498574 -104287881 + (TA)n Simple_repeat Simple_repeat 1 32 0 260 223 45 0 chr12 39498637 39498749 -104287706 + (CATATA)n Simple_repeat Simple_repeat 3 119 0 1368 232 121 49 chr12 39498752 39499200 -104287255 - MLT2B1 LTR ERVL -40 480 1 27 0 0 0 chr12 39499278 39499305 -104287150 + AT_rich Low_complexity Low_complexity 1 27 0 2356 121 19 22 chr12 39499322 39499687 -104286768 + THE1B LTR MaLR 1 364 0 425 343 130 11 chr12 39499777 39500240 -104286215 - HAL1 LINE L1 -585 1922 1405 444 294 80 46 chr12 39500686 39501124 -104285331 - HAL1 LINE L1 -1254 1253 801 1795 244 30 8 chr12 39501805 39502206 -104284249 + L1M3c LINE L1 11 420 -5721 185 279 261 9 chr12 39503889 39504000 -104282455 - L2 LINE L2 0 3313 3175 * 186 279 27 45 chr12 39503994 39504105 -104282350 - MIR SINE MIR 0 262 154 204 129 0 0 chr12 39504919 39504950 -104281505 - MIR SINE MIR 0 262 232 292 171 0 79 chr12 39504993 39505069 -104281386 - HsTC2 DNA Tc2 -1828 70 1 245 265 71 0 chr12 39505547 39505645 -104280810 + LTR67 LTR ERVL 434 538 -19 8842 108 22 2 chr12 39506684 39507935 -104278520 - HSMAR1 DNA Mariner -2 1285 10 826 287 51 69 chr12 39508189 39508601 -104277854 + MLT1J LTR MaLR 1 347 -103 694 238 114 21 chr12 39508601 39508794 -104277661 - MER58C DNA MER1_type -4 211 1 826 287 51 69 chr12 39508794 39508874 -104277581 + MLT1J LTR MaLR 347 427 -23 365 273 50 0 chr12 39509014 39509113 -104277342 + MER91B DNA MER1_type 27 130 -60 31 0 0 0 chr12 39509446 39509477 -104276978 + AT_rich Low_complexity Low_complexity 1 31 0 2341 35 42 3 chr12 39509796 39510080 -104276375 + AluY SINE Alu 1 295 -16 1078 306 87 16 chr12 39510129 39510633 -104275822 + LTR67 LTR ERVL 2 541 -16 612 210 119 45 chr12 39511501 39511677 -104274778 - MER5A DNA MER1_type 0 189 1 258 320 25 0 chr12 39511978 39512100 -104274355 + MLT1L LTR MaLR 491 615 0 531 264 23 8 chr12 39513230 39513359 -104273096 + L2 LINE L2 3136 3266 -6 7103 201 63 14 chr12 39514203 39515947 -104270508 - L1MCa LINE L1 -2579 3847 2190 1629 177 50 3 chr12 39515947 39516230 -104270225 - AluSx SINE Alu -16 296 1 7103 201 63 14 chr12 39516230 39516307 -104270148 - L1MCa LINE L1 -4236 2190 2118 1972 116 0 79 chr12 39516307 39516625 -104269830 - AluSc SINE Alu -14 295 3 7103 201 63 14 chr12 39516625 39518283 -104268172 - L1MCa LINE L1 -4308 2118 104 345 199 53 93 chr12 39518350 39518501 -104267954 - MER112 DNA MER1_type -97 163 19 1620 185 37 16 chr12 39519731 39520110 -104266345 - Charlie5 DNA MER1_type 0 2624 2238 718 167 0 0 chr12 39520122 39520242 -104266213 - MER3 DNA MER1_type -42 167 48 24 32 0 0 chr12 39521015 39521046 -104265409 + AT_rich Low_complexity Low_complexity 1 31 0 319 347 71 34 chr12 39521905 39522144 -104264311 - L2 LINE L2 -514 2800 2553 198 0 0 0 chr12 39522593 39522615 -104263840 + (A)n Simple_repeat Simple_repeat 1 22 0 427 321 22 0 chr12 39523719 39523853 -104262602 + MIR3 SINE MIR 67 203 -5 237 224 105 13 chr12 39524025 39524101 -104262354 - MIR3 SINE MIR -8 200 118 514 282 186 30 chr12 39524132 39524433 -104262022 - L2 LINE L2 -42 3271 2924 248 160 0 40 chr12 39524482 39524532 -104261923 - L2 LINE L2 0 3313 3266 25 51 0 0 chr12 39524703 39524742 -104261713 + AT_rich Low_complexity Low_complexity 1 39 0 3613 166 39 79 chr12 39525472 39526298 -104260157 - MER54B LTR ERVL 0 793 1 181 291 43 92 chr12 39526408 39526549 -104259906 - L2 LINE L2 -303 2969 2836 570 282 39 6 chr12 39526747 39526928 -104259527 - Charlie8 DNA MER1_type -2184 233 47 317 379 115 14 chr12 39526955 39527459 -104258996 - L2 LINE L2 -553 2761 2207 214 310 14 0 chr12 39527454 39527525 -104258930 - L2 LINE L2 0 3272 3201 * 801 144 0 16 chr12 39527634 39527759 -104258696 - Tigger1 DNA MER2_type 0 2418 2296 271 30 0 0 chr12 39527836 39527869 -104258586 - Tigger1 DNA MER2_type -125 2293 2261 657 122 73 0 chr12 39527908 39528031 -104258424 - Tigger1 DNA MER2_type -121 2297 2166 882 126 0 46 chr12 39728109 39728283 -104058172 - AluSq SINE Alu -119 194 29 780 203 0 18 chr12 39728287 39728450 -104058005 + AluSq SINE Alu 49 208 -105 1112 129 47 0 chr12 39729092 39729263 -104057192 + AluJo SINE Alu 121 299 -13 359 257 105 0 chr12 39729263 39729368 -104057087 - L2 LINE L2 -300 3013 2898 935 114 0 0 chr12 39729378 39729509 -104056946 + AluSg1 SINE Alu 1 131 -178 2207 98 10 3 chr12 39729511 39729817 -104056638 + AluSg SINE Alu 1 308 -2 1797 132 0 75 chr12 39729834 39730188 -104056267 + AluJo SINE Alu 3 331 0 1860 137 3 29 chr12 39731982 39732177 -104054278 + AluSx SINE Alu 3 189 -123 2313 83 0 3 chr12 39732177 39732478 -104053977 - AluY SINE Alu -11 300 1 1860 137 3 29 chr12 39732478 39732588 -104053867 + AluSx SINE Alu 189 300 -12 824 309 68 14 chr12 39732698 39732846 -104053609 + L2 LINE L2 2925 3064 -249 2275 94 7 0 chr12 39732846 39733153 -104053302 + AluSx SINE Alu 1 309 -3 824 309 68 14 chr12 39733153 39733373 -104053082 + L2 LINE L2 3064 3313 0 452 325 147 0 chr12 39733345 39733576 -104052879 - L2 LINE L2 -365 2949 2685 * 555 220 73 0 chr12 39734549 39734658 -104051797 + FLAM_C SINE Alu 1 117 -26 188 35 35 0 chr12 39734658 39734687 -104051768 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2141 114 3 0 chr12 39734691 39734997 -104051458 + AluSx SINE Alu 1 307 -5 2187 91 0 24 chr12 39735329 39735627 -104050828 + AluSx SINE Alu 10 300 -12 2318 84 3 0 chr12 39735629 39735925 -104050530 + AluSp SINE Alu 3 299 -14 1498 174 7 48 chr12 39735926 39736220 -104050235 - AluJo SINE Alu -25 287 6 365 263 11 0 chr12 39736239 39736334 -104050121 - MIR SINE MIR -14 248 153 2074 106 0 23 chr12 39736687 39736988 -104049467 - AluSx SINE Alu -14 298 5 2092 102 3 3 chr12 39737013 39737307 -104049148 - AluSx SINE Alu -18 294 1 2034 116 3 26 chr12 39737310 39737613 -104048842 - AluSx SINE Alu -16 296 1 2009 148 0 13 chr12 39737613 39737924 -104048531 - AluJo SINE Alu -5 307 1 431 286 30 21 chr12 39737956 39738108 -104048347 - MIR SINE MIR -27 181 31 2098 124 0 0 chr12 39738115 39738405 -104048050 - AluSx SINE Alu -16 296 7 746 224 64 0 chr12 39738508 39738664 -104047791 + FRAM SINE Alu 1 158 -18 1364 102 10 29 chr12 39738668 39738873 -104047582 + AluSc SINE Alu 102 302 -7 2400 81 3 0 chr12 39738873 39739183 -104047272 + AluY SINE Alu 1 311 0 2415 52 0 23 chr12 39739190 39739499 -104046956 + AluY SINE Alu 1 302 -9 405 259 86 0 chr12 39739504 39739585 -104046870 + FLAM_A SINE Alu 1 88 -54 1848 154 7 7 chr12 39739585 39739878 -104046577 + AluJo SINE Alu 1 293 -19 822 117 0 80 chr12 39739880 39739966 -104046489 + AluSq/x SINE Alu 1 74 -238 2337 66 7 7 chr12 39739966 39740271 -104046184 + AluY SINE Alu 1 305 -6 822 117 0 80 chr12 39740271 39740321 -104046134 + AluSq/x SINE Alu 74 126 -186 1117 135 5 42 chr12 39740321 39740365 -104046090 + AluSg/x SINE Alu 97 141 -165 2304 53 7 13 chr12 39740365 39740665 -104045790 + AluY SINE Alu 1 298 -13 1117 135 5 42 chr12 39740665 39740837 -104045618 + AluSg/x SINE Alu 141 306 0 903 209 0 0 chr12 39740844 39740997 -104045458 + FRAM SINE Alu 4 156 -10 2270 66 0 26 chr12 39741084 39741389 -104045066 - AluSg SINE Alu -12 298 2 344 160 66 75 chr12 39741392 39741498 -104044957 - MIR SINE MIR -65 197 93 597 184 61 9 chr12 39742518 39742627 -104043828 + AluJo/FLAM SINE Alu 1 116 -192 1691 137 38 0 chr12 39742627 39742890 -104043565 - AluSx SINE Alu -39 273 1 860 170 0 108 chr12 39743127 39743212 -104043243 + FRAM SINE Alu 4 97 -215 1804 129 93 0 chr12 39743212 39743490 -104042965 + AluSq SINE Alu 1 304 -9 860 170 0 108 chr12 39743490 39743550 -104042905 + FRAM SINE Alu 97 126 -186 2278 103 0 0 chr12 39743550 39743852 -104042603 - AluSx SINE Alu -5 307 6 860 170 0 108 chr12 39743852 39743899 -104042556 + FRAM SINE Alu 126 176 0 1823 112 3 112 chr12 39744713 39744883 -104041572 - AluJo SINE Alu 0 302 115 2153 99 3 3 chr12 39744883 39745176 -104041279 - AluSg SINE Alu -17 293 1 272 0 79 0 chr12 39745176 39745214 -104041241 + T-rich Low_complexity Low_complexity 2 42 0 2072 103 7 0 chr12 39745214 39745496 -104040959 - AluSx SINE Alu -28 284 1 2081 104 3 7 chr12 39745502 39745689 -104040766 - AluSq SINE Alu 0 320 133 2170 93 3 0 chr12 39745689 39745980 -104040475 - AluSp SINE Alu -21 292 1 2081 104 3 7 chr12 39745980 39746113 -104040342 - AluSq SINE Alu -187 133 1 2006 117 7 0 chr12 39746113 39746445 -104040010 - AluSx SINE Alu 0 312 8 1903 154 0 10 chr12 39746454 39746765 -104039690 - AluJb SINE Alu -4 308 1 1823 112 3 112 chr12 39746765 39746912 -104039543 - AluJo SINE Alu -197 105 1 2077 93 31 0 chr12 39747943 39748232 -104038223 - AluSp SINE Alu -15 298 1 1612 116 0 0 chr12 39748258 39748482 -104037973 - AluSx SINE Alu -88 224 1 1712 171 20 13 chr12 39748532 39748837 -104037618 - AluJo SINE Alu 0 312 6 2274 79 0 28 chr12 39748987 39749304 -104037151 + AluY SINE Alu 1 308 -3 1839 174 0 6 chr12 39749324 39749635 -104036820 + AluSx SINE Alu 1 309 -3 865 196 6 6 chr12 39749647 39749805 -104036650 + FRAM SINE Alu 2 159 -7 1751 66 0 0 chr12 39749805 39750018 -104036437 + AluSx SINE Alu 1 213 -99 1938 123 3 3 chr12 39750223 39750507 -104035948 + AluSp SINE Alu 1 284 -29 2204 107 0 3 chr12 39750659 39750958 -104035497 - AluSg SINE Alu -12 298 1 2446 65 0 0 chr12 39750985 39751292 -104035163 - AluY SINE Alu -4 307 1 1229 199 142 11 chr12 39751601 39751868 -104034587 - AluJb SINE Alu 0 302 1 2377 66 0 0 chr12 39751880 39752184 -104034271 - AluY SINE Alu -7 304 1 2179 72 10 17 chr12 39752217 39752508 -104033947 - AluY SINE Alu -12 299 11 2488 70 3 0 chr12 39752520 39752832 -104033623 - AluSp SINE Alu 0 313 1 2641 29 0 13 chr12 39752838 39753151 -104033304 - AluYa5 SINE Alu -1 310 2 1831 38 0 0 chr12 39753284 39753497 -104032958 + AluY SINE Alu 1 213 -98 2057 116 16 3 chr12 39753527 39753830 -104032625 - AluSx SINE Alu -5 307 1 391 277 45 0 chr12 39754868 39754980 -104031475 + MIR SINE MIR 146 262 0 391 280 39 93 chr12 39754946 39755128 -104031327 - MIR SINE MIR -83 179 8 1486 175 60 4 chr12 39755211 39755480 -104030975 + AluJb SINE Alu 1 284 -28 1226 46 0 58 chr12 39755560 39755734 -104030721 - SVA Other Other 0 1386 1223 539 302 164 44 chr12 39755734 39755909 -104030546 - L1ME4a LINE L1 -76 6045 5892 2144 117 3 3 chr12 39755909 39756216 -104030239 - AluSx SINE Alu -5 307 1 539 302 164 44 chr12 39756216 39756381 -104030074 - L1ME4a LINE L1 -229 5892 5664 2011 118 10 13 chr12 39756383 39756687 -104029768 - AluSx SINE Alu -9 303 1 2186 105 0 3 chr12 39756718 39757013 -104029442 + AluSg SINE Alu 1 294 -16 2263 85 0 0 chr12 39757018 39757311 -104029144 + AluSq SINE Alu 1 293 -20 1318 165 39 67 chr12 39757339 39757781 -104028674 + AluJo SINE Alu 6 439 0 708 176 0 0 chr12 39757784 39757892 -104028563 - AluJo/FLAM SINE Alu -204 108 1 1203 99 0 5 chr12 39758028 39758230 -104028225 - AluSq SINE Alu -12 301 1 268 292 62 0 chr12 39758412 39758508 -104027947 + MIR SINE MIR 118 219 -43 2269 98 3 0 chr12 39758750 39759055 -104027400 - AluSp SINE Alu -7 306 1 2344 51 7 3 chr12 39759141 39759433 -104027022 - AluY SINE Alu -18 293 1 2204 111 0 0 chr12 39759441 39759738 -104026717 - AluSx SINE Alu -15 297 1 2089 106 10 10 chr12 39759738 39760037 -104026418 - AluSx SINE Alu -11 301 1 339 310 78 0 chr12 39760042 39760171 -104026284 - MIR3 SINE MIR -67 141 3 543 196 0 0 chr12 39760432 39760534 -104025921 - MER3 DNA MER1_type -97 112 11 647 107 0 68 chr12 39760580 39760683 -104025772 + FLAM_C SINE Alu 25 120 -23 2232 98 0 0 chr12 39760782 39761077 -104025378 - AluSq SINE Alu -18 295 1 1185 150 0 0 chr12 39761081 39761261 -104025194 - AluJb SINE Alu 0 312 133 180 263 123 0 chr12 39761262 39761319 -104025136 - MIR SINE MIR -114 148 85 1219 195 0 31 chr12 39761333 39761590 -104024865 + AluJo SINE Alu 64 312 0 2309 110 0 0 chr12 39761791 39762100 -104024355 - AluSx SINE Alu -3 309 1 1879 147 0 19 chr12 39762246 39762558 -104023897 + AluJo SINE Alu 1 306 -6 799 190 14 0 chr12 39762624 39762766 -104023689 + FRAM SINE Alu 1 144 -32 1389 159 45 55 chr12 39762771 39762950 -104023505 - AluJb SINE Alu -12 300 124 2308 93 0 3 chr12 39762950 39763250 -104023205 - AluSx SINE Alu -13 299 1 1389 159 45 55 chr12 39763250 39763360 -104023095 - AluJb SINE Alu -188 124 14 2254 95 10 3 chr12 39763374 39763678 -104022777 - AluSg SINE Alu -4 306 1 2099 102 0 3 chr12 39763707 39764015 -104022440 + AluSq SINE Alu 1 307 0 219 74 0 74 chr12 39764642 39764696 -104021759 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 198 143 0 0 chr12 39765912 39765947 -104020508 + (T)n Simple_repeat Simple_repeat 1 35 0 2137 114 14 0 chr12 39767046 39767343 -104019112 + AluSx SINE Alu 1 301 -11 2353 68 7 7 chr12 39767644 39767953 -104018502 + AluSg SINE Alu 1 309 -1 21 0 0 0 chr12 39767974 39767995 -104018460 + AT_rich Low_complexity Low_complexity 1 21 0 1053 123 7 7 chr12 39768003 39768157 -104018298 + AluSq SINE Alu 1 154 -159 602 165 0 0 chr12 39768158 39768255 -104018200 + AluSg/x SINE Alu 208 304 -5 425 276 61 37 chr12 39768533 39768788 -104017667 + L1P2 LINE L1 5582 5849 -305 2010 131 0 13 chr12 39768803 39769149 -104017306 - AluSg SINE Alu 0 310 3 1823 149 0 46 chr12 39769157 39769480 -104016975 - AluJb SINE Alu 0 312 5 1891 153 17 0 chr12 39769484 39769784 -104016671 - AluJo SINE Alu -7 305 1 2101 113 3 0 chr12 39769813 39770105 -104016350 + AluSq SINE Alu 1 293 -20 1412 182 17 116 chr12 39770106 39770301 -104016154 + MLT1A2 LTR MaLR 1 214 -160 1935 127 69 0 chr12 39770301 39770592 -104015863 - AluSx SINE Alu -1 311 1 1412 182 17 116 chr12 39770592 39770691 -104015764 + MLT1A2 LTR MaLR 214 321 -53 1875 132 14 3 chr12 39770691 39770980 -104015475 - AluSg SINE Alu -18 292 1 2190 107 0 19 chr12 39770981 39771299 -104015156 - AluSx SINE Alu 0 312 1 1412 182 17 116 chr12 39771299 39771414 -104015041 + MLT1A2 LTR MaLR 320 372 -2 1201 191 15 103 chr12 39771442 39771772 -104014683 + AluJb SINE Alu 2 302 0 1436 198 3 40 chr12 39771817 39771970 -104014485 - AluJo SINE Alu -25 287 149 2029 135 0 0 chr12 39771970 39772267 -104014188 - AluSx SINE Alu -15 297 1 1436 198 3 40 chr12 39772267 39772411 -104014044 - AluJo SINE Alu -163 149 1 2100 111 3 3 chr12 39772579 39772877 -104013578 - AluSq SINE Alu -15 298 1 265 274 177 0 chr12 39773368 39773481 -104012974 + MIR SINE MIR 90 222 -40 1392 130 34 111 chr12 39773516 39773555 -104012900 + AluJo SINE Alu 1 41 -271 2010 94 0 43 chr12 39773555 39773889 -104012566 - AluSx SINE Alu 0 321 1 1392 130 34 111 chr12 39773889 39774172 -104012283 + AluJo SINE Alu 41 299 -13 2137 97 14 0 chr12 39774173 39774463 -104011992 + AluSg SINE Alu 1 294 -16 2364 90 0 3 chr12 39774463 39774775 -104011680 + AluY SINE Alu 1 311 0 1481 181 0 8 chr12 39774807 39775072 -104011383 - AluJo SINE Alu -49 263 1 1881 141 47 0 chr12 39775077 39775375 -104011080 - AluSx SINE Alu 0 312 1 1051 151 0 27 chr12 39775429 39775614 -104010841 + FRAM SINE Alu 1 176 0 925 276 196 17 chr12 39775691 39776347 -104010108 + L2 LINE L2 2450 3238 -75 1759 109 0 8 chr12 39778038 39778286 -104008169 + AluY SINE Alu 40 285 -26 207 65 0 0 chr12 39778305 39778315 -104008140 + (CA)n Simple_repeat Simple_repeat 2 11 -21 1551 149 31 45 chr12 39778315 39778604 -104007851 + AluJb SINE Alu 1 285 -27 207 65 0 0 chr12 39778604 39778624 -104007831 + (CA)n Simple_repeat Simple_repeat 10 32 0 208 222 33 11 chr12 39778653 39778743 -104007712 + (CA)n Simple_repeat Simple_repeat 2 93 0 2034 137 0 7 chr12 39778993 39779299 -104007156 + AluJb SINE Alu 1 304 -8 182 211 0 0 chr12 39779454 39779492 -104006963 - MIR SINE MIR -113 149 112 882 175 0 28 chr12 39780896 39781073 -104005382 - FRAM SINE Alu -8 168 1 201 160 0 46 chr12 39781715 39781758 -104004697 + L2 LINE L2 3214 3294 -19 421 275 184 38 chr12 39781991 39782343 -104004112 + L2 LINE L2 2673 3074 -239 2008 96 16 48 chr12 39782369 39782682 -104003773 - AluSx SINE Alu -9 303 1 1622 184 7 7 chr12 39782802 39783096 -104003359 - AluJb SINE Alu -6 306 13 366 212 115 91 chr12 39783116 39783171 -104003284 + MIR SINE MIR 94 146 -116 2211 116 0 0 chr12 39783171 39783474 -104002981 + AluSx SINE Alu 1 303 -9 366 212 115 91 chr12 39783474 39783583 -104002872 + MIR SINE MIR 146 262 0 2206 112 0 0 chr12 39783962 39784265 -104002190 - AluSg SINE Alu -7 303 1 1706 140 51 10 chr12 39784265 39784555 -104001900 - AluJb SINE Alu -10 302 1 493 235 65 80 chr12 39784749 39784813 -104001642 + L1MC4a LINE L1 6349 6412 -1396 2327 86 0 3 chr12 39784813 39785117 -104001338 + AluSx SINE Alu 1 303 -9 493 235 65 80 chr12 39785117 39785312 -104001143 + L1MC4a LINE L1 6412 6520 -1288 2208 102 3 0 chr12 39785314 39785607 -104000848 + AluSc SINE Alu 1 294 -15 2053 119 3 7 chr12 39785607 39785901 -104000554 + AluSg SINE Alu 1 293 -17 612 158 18 9 chr12 39785910 39786024 -104000431 + L1MB7 LINE L1 6061 6175 -9 345 313 39 39 chr12 39786026 39786208 -104000247 - MIR SINE MIR 0 262 81 2214 86 16 22 chr12 39786409 39786724 -103999731 - AluSp SINE Alu 0 313 1 2287 82 3 7 chr12 39787203 39787509 -103998946 + AluSp SINE Alu 1 305 -8 1679 143 0 71 chr12 39787536 39787858 -103998597 + AluJo SINE Alu 5 303 -9 835 154 0 22 chr12 39787865 39788001 -103998454 + FLAM_C SINE Alu 1 133 0 384 119 0 0 chr12 39788013 39788072 -103998383 + (CA)n Simple_repeat Simple_repeat 2 60 0 351 113 0 0 chr12 39788078 39788131 -103998324 + (TG)n Simple_repeat Simple_repeat 2 54 0 2246 75 10 0 chr12 39788145 39788437 -103998018 + AluSp SINE Alu 2 296 -17 1110 162 0 0 chr12 39788440 39788637 -103997818 - L1MC1 LINE L1 -312 6021 5825 2349 84 0 10 chr12 39788639 39788664 -103997791 - AluY SINE Alu -4 307 283 1153 49 0 25 chr12 39788664 39788827 -103997628 + (CATATA)n Simple_repeat Simple_repeat 4 162 0 2349 84 0 10 chr12 39788827 39789111 -103997344 - AluY SINE Alu -28 283 1 941 99 0 0 chr12 39789113 39789244 -103997211 - AluSg1 SINE Alu -178 131 1 810 171 0 0 chr12 39789255 39789384 -103997071 - FRAM SINE Alu -24 152 24 1616 203 3 3 chr12 39789395 39789705 -103996750 + AluJb SINE Alu 1 310 -2 1604 210 6 61 chr12 39789709 39789805 -103996650 - L1MB8 LINE L1 -140 6038 5938 2157 117 0 0 chr12 39789805 39790104 -103996351 - AluSx SINE Alu -13 299 1 1604 210 6 61 chr12 39790104 39790233 -103996222 - L1MB8 LINE L1 -240 5938 5804 2063 115 16 19 chr12 39790233 39790545 -103995910 - AluSq SINE Alu -2 311 1 791 110 79 31 chr12 39790545 39790672 -103995783 - AluJo/FLAM SINE Alu -169 133 1 1604 210 6 61 chr12 39790672 39790939 -103995516 - L1MB8 LINE L1 -372 5806 5571 384 77 0 0 chr12 39790951 39791003 -103995452 + (TTTCC)n Simple_repeat Simple_repeat 4 55 0 1675 185 0 58 chr12 39791005 39791185 -103995270 - AluJo SINE Alu -2 310 156 2399 54 0 7 chr12 39791185 39791482 -103994973 - AluY SINE Alu -16 295 1 1675 185 0 58 chr12 39791482 39791630 -103994825 - AluJo SINE Alu -156 156 1 1528 209 20 3 chr12 39791660 39791966 -103994489 + AluJo SINE Alu 1 311 -1 2105 109 3 0 chr12 39791993 39792322 -103994133 + AluSp SINE Alu 1 330 0 411 164 0 182 chr12 39792322 39792412 -103994043 - L1MB8 LINE L1 -620 5554 5504 2184 123 0 0 chr12 39792412 39792720 -103993735 - AluSx SINE Alu -2 310 3 411 164 0 182 chr12 39792720 39792788 -103993667 - L1MB8 LINE L1 -670 5504 5425 1686 156 0 36 chr12 39792798 39793105 -103993350 + AluJo SINE Alu 1 296 -16 2381 67 3 0 chr12 39793107 39793405 -103993050 + AluY SINE Alu 1 299 -12 2103 96 7 0 chr12 39793414 39793695 -103992760 + AluSq SINE Alu 1 283 -30 1462 180 13 66 chr12 39793728 39794033 -103992422 - AluJb SINE Alu -9 303 15 620 202 0 0 chr12 39794033 39794137 -103992318 - AluJb SINE Alu -207 105 2 2045 125 3 25 chr12 39794256 39794439 -103992016 - AluSq SINE Alu 0 313 138 2245 110 3 0 chr12 39794439 39794748 -103991707 - AluSg SINE Alu 0 310 1 2045 125 3 25 chr12 39794748 39794884 -103991571 - AluSq SINE Alu -175 138 1 577 287 23 0 chr12 39795214 39795388 -103991067 + MLT1I LTR MaLR 232 409 0 423 298 122 50 chr12 39795391 39795670 -103990785 + L2 LINE L2 3015 3313 0 2405 78 3 0 chr12 39795675 39795984 -103990471 + AluSg SINE Alu 1 310 0 2134 108 7 3 chr12 39796020 39796316 -103990139 + AluSx SINE Alu 1 297 -15 1205 151 20 148 chr12 39796787 39796951 -103989504 + AluSx SINE Alu 2 101 -201 2069 117 0 43 chr12 39796951 39797275 -103989180 + AluSx SINE Alu 1 310 -2 1205 151 20 148 chr12 39797275 39797455 -103989000 + AluSx SINE Alu 101 302 0 361 290 0 0 chr12 39797458 39797596 -103988859 - L1ME LINE L1 -641 5523 5386 886 132 0 0 chr12 39797629 39797758 -103988697 - FLAM_C SINE Alu -9 134 6 1542 181 7 29 chr12 39797760 39798069 -103988386 - AluJo SINE Alu -10 302 1 1466 151 13 74 chr12 39798079 39798391 -103988064 - AluJb SINE Alu -19 293 1 544 286 17 11 chr12 39798589 39798764 -103987691 - MLT1C LTR MaLR -9 458 283 1979 103 37 0 chr12 39798765 39799063 -103987392 - AluSq SINE Alu 0 312 5 948 148 26 0 chr12 39799086 39799241 -103987214 + FRAM SINE Alu 1 152 -24 436 182 27 18 chr12 39799241 39799351 -103987104 - MLT1C LTR MaLR -354 113 3 2221 98 0 0 chr12 39799625 39799922 -103986533 + AluSq SINE Alu 1 297 -16 800 167 53 0 chr12 39799943 39800075 -103986380 + AluJb SINE Alu 144 282 -30 559 186 39 6 chr12 39800078 39800234 -103986221 + Charlie5 DNA MER1_type 2424 2584 -28 1867 156 0 0 chr12 39800255 39800577 -103985878 - AluSq SINE Alu 0 324 3 780 163 0 30 chr12 39800634 39800769 -103985686 + FLAM_A SINE Alu 1 131 -2 425 312 43 0 chr12 39800908 39801049 -103985406 - MIR SINE MIR 0 262 116 811 212 0 0 chr12 39801052 39801198 -103985257 + FRAM SINE Alu 1 146 -30 505 261 8 8 chr12 39801302 39801432 -103985023 + MIR SINE MIR 3 132 -130 1956 102 60 3 chr12 39801432 39801746 -103984709 - pTR5 LTR ERV1 -1935 503 172 330 233 11 0 chr12 39801749 39801839 -103984616 - LTR30 LTR ERV1 -80 642 552 198 367 37 9 chr12 39801839 39801948 -103984507 - MIR SINE MIR -56 152 41 835 194 21 0 chr12 39801987 39802131 -103984324 + AluJb SINE Alu 144 290 -22 2118 109 3 3 chr12 39802138 39802431 -103984024 + AluSx SINE Alu 5 297 -15 1360 71 98 0 chr12 39802469 39802653 -103983802 - AluY SINE Alu -109 202 1 436 198 38 28 chr12 39802653 39802759 -103983696 + AluJb SINE Alu 202 308 -4 545 221 42 33 chr12 39802773 39802795 -103983660 + MLT1A2 LTR MaLR 237 257 -117 2128 73 35 3 chr12 39802795 39803107 -103983348 + AluSp SINE Alu 1 313 0 545 221 42 33 chr12 39803107 39803237 -103983218 + MLT1A2 LTR MaLR 257 374 0 345 294 118 38 chr12 39803270 39803375 -103983080 - L2 LINE L2 -188 3125 3030 1959 134 28 0 chr12 39803375 39803666 -103982789 + AluJb SINE Alu 1 299 -13 345 294 118 38 chr12 39803666 39803771 -103982684 - L2 LINE L2 -283 3030 2898 2239 107 3 0 chr12 39803781 39804091 -103982364 + AluSx SINE Alu 1 311 -1 184 239 0 0 chr12 39804243 39804289 -103982166 - L3 LINE CR1 -945 632 587 215 381 10 0 chr12 39804334 39804431 -103982024 - MIR SINE MIR -15 247 150 2178 119 3 0 chr12 39804443 39804755 -103981700 + AluSq SINE Alu 1 313 0 1490 190 13 51 chr12 39804777 39804921 -103981534 + AluJo SINE Alu 1 149 -163 2484 60 0 0 chr12 39804921 39805219 -103981236 + AluY SINE Alu 1 298 -13 1490 190 13 51 chr12 39805219 39805385 -103981070 + AluJo SINE Alu 149 299 -13 189 0 0 0 chr12 39805423 39805444 -103981011 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 718 136 0 0 chr12 39805448 39805551 -103980904 + FLAM_A SINE Alu 21 123 -19 430 254 99 0 chr12 39805582 39805596 -103980859 - L1MA10 LINE L1 0 6334 6321 363 284 59 65 chr12 39805596 39805734 -103980721 - L1ME2 LINE L1 -9 6155 6017 1606 153 42 10 chr12 39805734 39806022 -103980433 + AluJo SINE Alu 9 305 -7 363 284 59 65 chr12 39806022 39806052 -103980403 - L1ME2 LINE L1 -147 6017 5988 268 103 52 17 chr12 39806072 39806130 -103980325 - L1ME2 LINE L1 -350 5892 5833 341 133 54 36 chr12 39806130 39806222 -103980233 - MIR SINE MIR -54 154 61 22 56 0 0 chr12 39806813 39806849 -103979606 + GC_rich Low_complexity Low_complexity 1 36 0 361 216 0 45 chr12 39807174 39807262 -103979193 + MIR SINE MIR 81 164 -98 249 300 14 0 chr12 39807326 39807396 -103979059 - MIR SINE MIR -77 185 115 2143 113 0 0 chr12 39807968 39808261 -103978194 + AluSx SINE Alu 10 302 -10 2028 99 32 3 chr12 39808267 39808551 -103977904 + AluSg1 SINE Alu 3 294 -15 818 206 0 0 chr12 39808557 39808698 -103977757 + FRAM SINE Alu 1 141 -35 1613 181 7 11 chr12 39808708 39808990 -103977465 + AluJo SINE Alu 1 281 -31 2026 125 0 25 chr12 39809003 39809323 -103977132 - AluSx SINE Alu 0 312 1 21 0 0 0 chr12 39809344 39809365 -103977090 + AT_rich Low_complexity Low_complexity 1 21 0 1082 161 6 0 chr12 39810152 39810320 -103976135 + FRAM SINE Alu 1 169 -7 603 67 0 0 chr12 39810320 39810395 -103976060 + AluS SINE Alu 1 75 -237 1996 114 0 0 chr12 39810395 39810666 -103975789 - AluSx SINE Alu -41 271 1 2120 96 3 19 chr12 39810688 39811002 -103975453 - AluSc SINE Alu 0 309 1 206 231 55 6 chr12 39811305 39811382 -103975073 + MIR SINE MIR 66 150 -58 2082 115 3 0 chr12 39811798 39812086 -103974369 - AluSq SINE Alu -18 295 7 2286 86 0 3 chr12 39812096 39812388 -103974067 - AluSx SINE Alu -21 291 1 273 282 0 77 chr12 39812408 39812525 -103973930 - L2 LINE L2 -22 3291 3184 701 109 127 9 chr12 39812573 39812683 -103973772 + AluJo/FLAM SINE Alu 1 123 -189 2010 129 0 14 chr12 39812683 39812977 -103973478 - AluSx SINE Alu -22 290 1 290 345 27 0 chr12 39813060 39813170 -103973285 - L2 LINE L2 -319 2994 2882 * 694 247 163 53 chr12 39813153 39813378 -103973077 + L2 LINE L2 2764 2963 -350 2232 96 3 0 chr12 39813378 39813671 -103972784 - AluY SINE Alu -9 302 9 694 247 163 53 chr12 39813671 39813703 -103972752 + L2 LINE L2 2963 2990 -323 374 119 51 0 chr12 39813703 39813762 -103972693 - U7 snRNA snRNA -1 62 1 694 247 163 53 chr12 39813762 39813855 -103972600 + L2 LINE L2 2990 3071 -242 1554 130 29 8 chr12 39813855 39814101 -103972354 + AluYb8 SINE Alu 1 251 -67 2041 91 7 17 chr12 39814102 39814389 -103972066 + AluSx SINE Alu 21 304 -8 694 247 163 53 chr12 39814389 39814533 -103971922 + L2 LINE L2 3070 3310 -3 232 186 68 0 chr12 39814650 39814709 -103971746 + C-rich Low_complexity Low_complexity 2 64 0 553 241 213 8 chr12 39815192 39815445 -103971010 - MLT1K LTR MaLR -116 472 168 191 107 0 0 chr12 39816181 39816209 -103970246 + MIR SINE MIR 117 144 -118 1742 132 70 0 chr12 39816237 39816509 -103969946 - AluJo SINE Alu -4 308 18 192 299 178 0 chr12 39817017 39817124 -103969331 - MIR SINE MIR -117 145 20 184 260 0 0 chr12 39817170 39817220 -103969235 - MIR SINE MIR -32 230 181 819 180 0 0 chr12 39817220 39817359 -103969096 - FRAM SINE Alu -17 159 21 597 256 131 0 chr12 39817447 39817638 -103968817 - MIR SINE MIR 0 262 47 21 0 0 0 chr12 39817928 39817949 -103968506 + GC_rich Low_complexity Low_complexity 1 21 0 235 234 135 45 chr12 39818192 39818303 -103968152 - MIR SINE MIR -127 135 15 462 227 30 53 chr12 39818610 39818742 -103967713 - MIR SINE MIR -103 159 31 896 137 0 0 chr12 39818751 39818882 -103967573 - AluJ SINE Alu -21 291 161 692 164 0 9 chr12 39818882 39818992 -103967463 - AluJ SINE Alu -203 109 1 1884 165 3 13 chr12 39819055 39819370 -103967085 + AluSx SINE Alu 1 312 0 1494 162 74 42 chr12 39819378 39819662 -103966793 + AluJb SINE Alu 1 293 -19 2164 89 34 7 chr12 39819783 39820076 -103966379 - AluSx SINE Alu -11 301 1 1212 110 0 0 chr12 39821215 39821379 -103965076 - AluSp SINE Alu -16 297 134 2037 106 3 7 chr12 39821381 39821674 -103964781 - AluSg SINE Alu -18 292 1 2247 112 0 0 chr12 39821677 39821972 -103964483 - AluSx SINE Alu -15 297 3 553 211 218 0 chr12 39822687 39822834 -103963621 - MIR SINE MIR -63 199 21 276 154 0 0 chr12 39822982 39823034 -103963421 + CT-rich Low_complexity Low_complexity 2 53 0 270 217 0 84 chr12 39823191 39823230 -103963225 - MIR SINE MIR -80 182 152 1632 201 10 3 chr12 39823230 39823533 -103962922 - AluJo SINE Alu -7 305 1 270 217 0 84 chr12 39823533 39823576 -103962879 - MIR SINE MIR -110 152 107 850 153 0 0 chr12 39823997 39824128 -103962327 - FLAM_C SINE Alu -1 132 2 280 181 72 48 chr12 39824170 39824253 -103962202 - MIR SINE MIR -79 183 99 2072 116 0 3 chr12 39824725 39825019 -103961436 - AluSx SINE Alu -19 293 1 1827 131 39 0 chr12 39825019 39825302 -103961153 - AluJo SINE Alu -18 294 1 2218 119 0 0 chr12 39825713 39826025 -103960430 - AluSx SINE Alu 0 312 1 2066 97 31 3 chr12 39826026 39826316 -103960139 - AluSx SINE Alu -14 298 1 1401 169 10 86 chr12 39826336 39826532 -103959923 - AluJo SINE Alu -23 289 80 2256 93 3 6 chr12 39826532 39826843 -103959612 + AluSq SINE Alu 2 311 -2 2309 93 3 0 chr12 39826847 39827148 -103959307 + AluSp SINE Alu 1 302 -11 1401 169 10 86 chr12 39827148 39827259 -103959196 - AluJo SINE Alu -235 77 1 344 331 66 0 chr12 39827426 39827562 -103958893 - MIR SINE MIR -70 192 48 28 29 0 0 chr12 39831552 39831587 -103954868 + GC_rich Low_complexity Low_complexity 1 35 0 1475 103 13 5 chr12 39832478 39832702 -103953753 - AluJb SINE Alu -3 309 84 718 148 8 8 chr12 39832742 39832870 -103953585 - FLAM_C SINE Alu -5 128 1 2383 56 7 3 chr12 39832936 39833241 -103953214 + AluY SINE Alu 1 306 -5 1302 106 5 0 chr12 39833241 39833419 -103953036 + AluSg/x SINE Alu 129 310 0 572 247 46 0 chr12 39833438 39833612 -103952843 - L2 LINE L2 -260 3053 2872 1235 84 21 11 chr12 39833662 39833852 -103952603 - AluY SINE Alu -1 310 119 298 93 0 0 chr12 39833852 39833895 -103952560 - Alu SINE Alu -11 297 255 1907 108 16 32 chr12 39833923 39834052 -103952403 + AluSq SINE Alu 2 132 -181 2476 44 0 3 chr12 39834052 39834349 -103952106 + AluY SINE Alu 1 296 -15 2372 69 0 3 chr12 39834352 39834658 -103951797 + AluSg SINE Alu 1 305 -5 2149 68 4 11 chr12 39834661 39834975 -103951480 + AluSg SINE Alu 1 312 0 1907 108 16 32 chr12 39834975 39835150 -103951305 + AluSq SINE Alu 136 310 -3 2261 104 0 0 chr12 39835805 39836102 -103950353 + AluSx SINE Alu 1 297 -15 2073 129 10 0 chr12 39836320 39836629 -103949826 - AluJo SINE Alu 0 312 1 1929 141 24 0 chr12 39836691 39836988 -103949467 - AluSx SINE Alu -8 304 1 1118 176 0 0 chr12 39837824 39838006 -103948449 + AluJo SINE Alu 87 268 -44 199 342 59 5 chr12 39838141 39838265 -103948190 - MIR3 SINE MIR -31 177 47 2416 53 3 28 chr12 39838423 39838742 -103947713 - AluY SINE Alu 0 311 1 2234 98 0 25 chr12 39838747 39838927 -103947528 - AluSx SINE Alu -2 310 140 2498 56 0 0 chr12 39838927 39839230 -103947225 - AluY SINE Alu -8 303 1 2234 98 0 25 chr12 39839230 39839367 -103947088 - AluSx SINE Alu -172 140 1 1505 100 0 35 chr12 39839367 39839597 -103946858 - AluSg/x SINE Alu -6 306 85 848 226 6 0 chr12 39839597 39839761 -103946694 - AluJo SINE Alu -147 165 1 2416 71 0 6 chr12 39840092 39840403 -103946052 - AluY SINE Alu -2 309 1 2102 110 3 0 chr12 39840403 39840704 -103945751 - AluSx SINE Alu -10 302 1 541 282 47 0 chr12 39840762 39840911 -103945544 + MIR SINE MIR 20 175 -87 956 146 2 4 chr12 39840949 39841181 -103945274 + AluY SINE Alu 2 312 0 1667 166 41 0 chr12 39841226 39841516 -103944939 - AluJb SINE Alu -6 306 5 1959 116 3 55 chr12 39841681 39841803 -103944652 - AluSx SINE Alu 0 312 185 2354 73 0 6 chr12 39841803 39842116 -103944339 + AluY SINE Alu 1 311 0 1959 116 3 55 chr12 39842116 39842322 -103944133 - AluSx SINE Alu -127 185 1 281 245 151 79 chr12 39842601 39842713 -103943742 - MIR SINE MIR -106 156 31 2226 88 7 7 chr12 39842713 39843020 -103943435 - AluSp SINE Alu -5 308 2 281 245 151 79 chr12 39843020 39843046 -103943409 - MIR SINE MIR -231 31 8 2038 98 0 11 chr12 39843048 39843333 -103943122 + AluSc SINE Alu 1 282 -27 1615 142 82 4 chr12 39843363 39843644 -103942811 + AluJo SINE Alu 1 303 -9 441 221 18 35 chr12 39843652 39843765 -103942690 + L2 LINE L2 3180 3290 -23 734 191 0 0 chr12 39844591 39844706 -103941749 + AluJb SINE Alu 2 116 -196 2088 102 10 7 chr12 39844707 39845010 -103941445 - AluSc SINE Alu -5 304 1 571 161 0 0 chr12 39845050 39845137 -103941318 + FRAM SINE Alu 72 158 -18 2057 129 10 0 chr12 39845137 39845446 -103941009 + AluSx SINE Alu 1 312 0 2013 138 0 0 chr12 39845496 39845794 -103940661 - AluSx SINE Alu -14 298 1 357 313 26 17 chr12 39845811 39845926 -103940529 - MIR3 SINE MIR -87 121 6 650 188 9 0 chr12 39846050 39846162 -103940293 + FLAM_C SINE Alu 29 141 -2 318 216 49 49 chr12 39846809 39846911 -103939544 + MIR SINE MIR 60 161 -101 2310 100 0 3 chr12 39846967 39847277 -103939178 + AluSc SINE Alu 1 309 0 416 131 0 12 chr12 39847277 39847361 -103939094 + (GGAA)n Simple_repeat Simple_repeat 4 86 0 410 301 147 0 chr12 39847388 39847544 -103938911 - MIR SINE MIR -64 198 20 1351 167 13 13 chr12 39847642 39847881 -103938574 + AluJo SINE Alu 42 280 -32 1109 49 7 0 chr12 39847881 39848025 -103938430 + (GAAA)n Simple_repeat Simple_repeat 2 146 0 1927 117 35 0 chr12 39848087 39848369 -103938086 + AluSc SINE Alu 3 294 -15 1691 152 3 61 chr12 39848519 39848670 -103937785 + AluJo SINE Alu 1 124 -188 2260 92 0 7 chr12 39848670 39848974 -103937481 + AluSc SINE Alu 1 302 -7 1691 152 3 61 chr12 39848974 39849150 -103937305 + AluJo SINE Alu 124 309 -3 1375 133 12 17 chr12 39849190 39849431 -103937024 + AluJo SINE Alu 72 311 -1 354 330 69 37 chr12 39849545 39849733 -103936722 - MIR SINE MIR -13 249 56 310 325 50 73 chr12 39850200 39850502 -103935953 - L1MEd LINE L1 -5009 1110 816 689 203 6 0 chr12 39850503 39850680 -103935775 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 229 266 76 0 chr12 39850692 39850771 -103935684 + L2 LINE L2 3137 3221 -51 1383 170 0 147 chr12 39850963 39851152 -103935303 - AluJb SINE Alu 0 302 187 1943 93 4 0 chr12 39851152 39851410 -103935045 - AluSx SINE Alu -53 259 1 1383 170 0 147 chr12 39851410 39851573 -103934882 - AluJb SINE Alu -115 187 2 2025 123 0 7 chr12 39851576 39851869 -103934586 - AluSp SINE Alu -22 291 1 2228 97 0 3 chr12 39851881 39852179 -103934276 - AluSg SINE Alu -13 297 1 2227 73 0 20 chr12 39852192 39852494 -103933961 - AluSg1 SINE Alu -13 296 1 2339 81 0 0 chr12 39852510 39852806 -103933649 - AluY SINE Alu -15 296 1 937 117 0 35 chr12 39852809 39852954 -103933501 - AluJo SINE Alu -170 142 3 332 305 117 19 chr12 39853070 39853224 -103933231 + MIR SINE MIR 6 174 -88 1994 98 0 0 chr12 39853309 39853575 -103932880 - AluSc SINE Alu -10 299 34 2113 121 3 6 chr12 39853865 39854178 -103932277 + AluSx SINE Alu 1 312 0 309 297 22 117 chr12 39854182 39854365 -103932090 - MIR SINE MIR -45 163 2 494 253 7 55 chr12 39854456 39854492 -103931963 - MIR SINE MIR -77 185 149 1639 189 0 10 chr12 39854492 39854661 -103931794 - AluJo SINE Alu -10 302 136 2339 71 0 13 chr12 39854661 39854971 -103931484 - AluY SINE Alu -5 306 1 1639 189 0 10 chr12 39854971 39855102 -103931353 - AluJo SINE Alu -176 136 5 494 253 7 55 chr12 39855102 39855211 -103931244 - MIR SINE MIR -113 149 47 1997 127 0 22 chr12 39855222 39855536 -103930919 - AluSg SINE Alu -1 309 3 2190 105 3 0 chr12 39855538 39855833 -103930622 - AluSp SINE Alu -17 296 1 1543 144 17 38 chr12 39855836 39856154 -103930301 - AluJb SINE Alu 0 312 1 2071 125 3 3 chr12 39856316 39856627 -103929828 + AluSx SINE Alu 1 311 -1 457 141 0 26 chr12 39857125 39857203 -103929252 - FLAM_A SINE Alu -56 76 1 751 188 70 2 chr12 39857203 39857396 -103929059 - L1MB3 LINE L1 -40 6126 5933 1156 134 27 0 chr12 39857410 39857597 -103928858 - AluSg/x SINE Alu 0 310 119 2067 98 0 52 chr12 39857620 39857945 -103928510 - AluSg SINE Alu -2 308 1 2025 125 0 13 chr12 39857945 39858249 -103928206 - AluSx SINE Alu -11 301 1 769 169 0 0 chr12 39858249 39858367 -103928088 + AluJo/FRAM SINE Alu 172 289 -23 411 56 0 0 chr12 39858560 39858614 -103927841 + (TG)n Simple_repeat Simple_repeat 2 55 0 1630 148 0 72 chr12 39858669 39858801 -103927654 + AluSx SINE Alu 5 145 -167 1994 117 3 3 chr12 39858801 39859107 -103927348 + AluSx SINE Alu 1 306 0 1630 148 0 72 chr12 39859107 39859121 -103927334 + AluSx SINE Alu 145 158 -154 231 36 0 0 chr12 39859121 39859149 -103927306 + (TA)n Simple_repeat Simple_repeat 1 28 0 1630 148 0 72 chr12 39859149 39859318 -103927137 + AluSx SINE Alu 158 299 -13 417 297 17 0 chr12 39859406 39859524 -103926931 + MIR SINE MIR 34 153 -109 1923 129 10 0 chr12 39859541 39859843 -103926612 + AluY SINE Alu 1 305 -6 240 35 0 0 chr12 39859849 39859878 -103926577 + (CA)n Simple_repeat Simple_repeat 2 30 0 225 65 0 0 chr12 39859894 39859925 -103926530 + Alu SINE Alu 225 255 -47 388 178 252 28 chr12 39859953 39860060 -103926395 + AluS SINE Alu 1 70 -232 2120 121 3 0 chr12 39860129 39860435 -103926020 - AluSx SINE Alu -5 307 1 657 179 54 0 chr12 39860436 39860548 -103925907 - AluJb SINE Alu -194 118 1 2112 104 3 0 chr12 39861165 39861453 -103925002 - AluSx SINE Alu -23 289 1 1883 131 3 32 chr12 39861671 39861985 -103924470 - AluSg SINE Alu -5 305 1 955 112 8 0 chr12 39862015 39862149 -103924306 + AluSq/x SINE Alu 1 135 -177 376 132 0 0 chr12 39862149 39862202 -103924253 + Alu SINE Alu 238 290 -10 1844 207 78 81 chr12 39862271 39862479 -103923976 - L1ME2 LINE L1 -122 6042 5835 1384 161 53 59 chr12 39862479 39862614 -103923841 + AluJo SINE Alu 1 135 -177 1972 98 7 28 chr12 39862614 39862899 -103923556 + AluSp SINE Alu 3 281 -32 186 43 0 0 chr12 39862899 39862922 -103923533 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1384 161 53 59 chr12 39862922 39863089 -103923366 + AluJo SINE Alu 133 302 -10 1844 207 78 81 chr12 39863089 39863519 -103922936 - L1ME2 LINE L1 -329 5835 5406 513 96 0 0 chr12 39863539 39863612 -103922843 - Alu SINE Alu -1 311 239 2227 81 3 37 chr12 39863622 39863943 -103922512 - AluSp SINE Alu -3 310 1 226 226 19 0 chr12 39864139 39864192 -103922263 - L1ME2 LINE L1 -2318 5490 5437 261 0 0 0 chr12 39864266 39864295 -103922160 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2240 43 18 0 chr12 39864303 39864579 -103921876 - AluY SINE Alu -30 281 1 1449 160 68 7 chr12 39864594 39864875 -103921580 - AluJo SINE Alu -14 298 1 186 103 0 0 chr12 39864896 39864925 -103921530 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 218 188 0 0 chr12 39865071 39865119 -103921336 + G-rich Low_complexity Low_complexity 6 53 0 355 248 106 0 chr12 39866722 39866835 -103919620 - L2 LINE L2 -5 3308 3184 232 267 33 0 chr12 39866944 39867004 -103919451 - L2 LINE L2 -316 2997 2936 384 286 9 9 chr12 39867254 39867359 -103919096 + MIR SINE MIR 33 137 -125 1715 125 54 11 chr12 39867770 39867903 -103918552 + AluY SINE Alu 2 128 -183 2011 114 7 10 chr12 39867903 39868221 -103918234 + AluSp SINE Alu 2 313 0 1715 125 54 11 chr12 39868221 39868367 -103918088 + AluY SINE Alu 128 293 -18 2025 127 0 0 chr12 39868393 39868677 -103917778 + AluSx SINE Alu 14 297 -15 1777 144 3 3 chr12 39868692 39868976 -103917479 + AluJo SINE Alu 9 292 -20 1139 59 0 0 chr12 39869062 39869197 -103917258 + AluSq/x SINE Alu 1 135 -177 1845 161 0 0 chr12 39869197 39869489 -103916966 + AluSq SINE Alu 1 292 -21 302 206 0 59 chr12 39869490 39869558 -103916897 - L1MC4 LINE L1 -1342 6700 6637 2436 43 0 7 chr12 39869580 39869881 -103916574 - AluY SINE Alu -12 299 1 180 0 0 0 chr12 39870010 39870030 -103916425 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1394 164 0 39 chr12 39870035 39870291 -103916164 - AluJo SINE Alu -33 279 34 410 38 0 0 chr12 39870391 39870444 -103916011 + AluY SINE Alu 248 300 -11 735 142 0 33 chr12 39870446 39870566 -103915889 - FLAM_A SINE Alu -17 116 1 466 255 7 21 chr12 39870647 39870788 -103915667 - L1ME3A LINE L1 0 6170 6032 21 36 0 0 chr12 39870814 39870842 -103915613 + AT_rich Low_complexity Low_complexity 1 28 0 1623 182 0 3 chr12 39870842 39871153 -103915302 - AluJb SINE Alu 0 310 1 2324 90 0 0 chr12 39871157 39871458 -103914997 - AluSg SINE Alu -9 301 1 2112 138 0 0 chr12 39871490 39871801 -103914654 - AluSx SINE Alu 0 312 2 911 151 0 0 chr12 39871841 39871967 -103914488 - FLAM_C SINE Alu -7 126 1 2022 135 3 0 chr12 39872004 39872308 -103914147 - AluSx SINE Alu -7 305 1 630 222 62 0 chr12 39872339 39872501 -103913954 + MER58C DNA MER1_type 44 215 0 2392 58 3 10 chr12 39872523 39872835 -103913620 - AluY SINE Alu -1 310 1 2415 75 0 0 chr12 39872835 39873142 -103913313 - AluSq SINE Alu -5 308 1 34 0 0 0 chr12 39873189 39873223 -103913232 + AT_rich Low_complexity Low_complexity 1 34 0 566 227 34 0 chr12 39873223 39873342 -103913113 - FLAM_A SINE Alu -10 123 1 22 0 0 0 chr12 39873350 39873372 -103913083 + AT_rich Low_complexity Low_complexity 1 22 0 1914 142 0 0 chr12 39873372 39873686 -103912769 + AluSx SINE Alu 1 314 0 357 177 0 0 chr12 39873688 39873750 -103912705 + AluS SINE Alu 1 62 -246 1490 202 0 10 chr12 39873750 39874047 -103912408 + AluJb SINE Alu 12 305 -7 1921 128 7 16 chr12 39874288 39874594 -103911861 + AluJo SINE Alu 1 303 -9 245 229 177 21 chr12 39875125 39875221 -103911234 + MIR SINE MIR 46 156 -106 1084 160 16 0 chr12 39875253 39875441 -103911014 - AluJb SINE Alu -2 310 120 2200 119 0 3 chr12 39875443 39875753 -103910702 - AluSx SINE Alu -3 309 1 824 158 0 0 chr12 39875767 39875894 -103910561 + FLAM_C SINE Alu 1 127 -16 1524 176 30 40 chr12 39875897 39876156 -103910299 + MLT1D LTR MaLR 180 437 -68 2086 102 3 3 chr12 39876156 39876469 -103909986 - AluSq SINE Alu 0 313 1 1524 176 30 40 chr12 39876469 39876538 -103909917 + MLT1D LTR MaLR 437 505 0 335 278 0 0 chr12 39876536 39876608 -103909847 - Tigger2a DNA MER2_type 0 444 373 * 819 154 0 0 chr12 39876611 39876734 -103909721 - FLAM_C SINE Alu -19 124 2 635 108 26 246 chr12 39876734 39876891 -103909564 - Tigger2a DNA MER2_type -2333 385 326 2391 90 0 0 chr12 39876891 39877202 -103909253 + AluSx SINE Alu 1 311 -1 635 108 26 246 chr12 39877202 39877349 -103909106 - Tigger2a DNA MER2_type -2392 326 148 901 127 0 8 chr12 39877351 39877485 -103908970 + AluSq/x SINE Alu 1 133 -180 2172 105 0 0 chr12 39877494 39877790 -103908665 + AluSx SINE Alu 1 296 -16 583 172 0 110 chr12 39877792 39877937 -103908518 - Tigger2a DNA MER2_type -305 129 1 322 306 106 29 chr12 39877941 39878085 -103908370 + MIR SINE MIR 23 183 -79 1555 142 98 0 chr12 39878085 39878359 -103908096 + AluJo SINE Alu 1 301 -11 322 306 106 29 chr12 39878359 39878384 -103908071 + MIR SINE MIR 183 205 -57 21 36 0 0 chr12 39878385 39878413 -103908042 + AT_rich Low_complexity Low_complexity 1 28 0 1263 200 30 4 chr12 39878452 39878601 -103907854 - AluJb SINE Alu -31 281 120 215 0 67 0 chr12 39878601 39878631 -103907824 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1263 200 30 4 chr12 39878631 39878751 -103907704 - AluJb SINE Alu -192 120 5 1224 99 0 0 chr12 39878785 39878946 -103907509 + AluSq SINE Alu 1 161 -152 837 170 0 0 chr12 39878963 39879110 -103907345 - AluJo/FRAM SINE Alu -30 282 136 2354 77 3 0 chr12 39879112 39879422 -103907033 - AluY SINE Alu 0 311 1 218 275 121 22 chr12 39879894 39879985 -103906470 + MIR SINE MIR 85 145 -63 1852 109 6 58 chr12 39880213 39880374 -103906081 - AluSq SINE Alu -18 295 127 2204 96 0 3 chr12 39880374 39880677 -103905778 - AluY SINE Alu -9 302 1 2050 48 0 0 chr12 39880677 39880928 -103905527 - AluY SINE Alu -7 304 54 1852 109 6 58 chr12 39880928 39880985 -103905470 - AluSq SINE Alu -184 129 1 659 132 0 0 chr12 39880985 39881076 -103905379 - AluS SINE Alu -221 91 1 901 153 27 38 chr12 39881158 39881341 -103905114 - AluJo SINE Alu -3 309 129 1710 165 14 7 chr12 39881350 39881647 -103904808 + AluJb SINE Alu 1 299 -13 675 168 97 0 chr12 39881727 39881840 -103904615 - FLAM_C SINE Alu -19 124 2 2119 93 3 7 chr12 39881875 39882165 -103904290 + AluSx SINE Alu 2 290 -22 1225 170 9 27 chr12 39882176 39882400 -103904055 + AluJb SINE Alu 85 304 -8 1741 125 96 4 chr12 39882403 39882683 -103903772 + AluSx SINE Alu 3 308 -4 1171 273 168 29 chr12 39882779 39882966 -103903489 - L2 LINE L2 -4 3309 3149 1541 173 3 34 chr12 39882966 39883261 -103903194 + AluJo SINE Alu 17 302 -10 1986 140 6 16 chr12 39883269 39883584 -103902871 + AluSx SINE Alu 1 312 0 1171 273 168 29 chr12 39883584 39883627 -103902828 - L2 LINE L2 -170 3143 3107 1680 160 0 60 chr12 39883627 39883813 -103902642 - AluJb SINE Alu 0 312 153 2159 111 10 3 chr12 39883813 39884119 -103902336 - AluSp SINE Alu -5 308 1 1680 160 0 60 chr12 39884119 39884264 -103902191 - AluJb SINE Alu -159 153 1 1171 273 168 29 chr12 39884264 39884822 -103901633 - L2 LINE L2 -206 3107 2628 2044 122 3 3 chr12 39884822 39885116 -103901339 + AluJo SINE Alu 1 294 -18 1171 273 168 29 chr12 39885116 39885309 -103901146 - L2 LINE L2 -685 2628 2146 776 159 0 0 chr12 39885766 39885879 -103900576 + AluJo/FLAM SINE Alu 6 118 -194 2234 109 3 0 chr12 39885880 39886191 -103900264 - AluSx SINE Alu 0 312 1 2122 89 14 3 chr12 39886216 39886498 -103899957 - AluSc SINE Alu -24 285 1 2010 125 30 0 chr12 39886500 39886795 -103899660 - AluSg SINE Alu -6 304 1 278 379 0 0 chr12 39886832 39886935 -103899520 - MIR SINE MIR -113 149 47 369 313 27 0 chr12 39886939 39887051 -103899404 + L2 LINE L2 3146 3260 -12 1632 193 6 3 chr12 39887055 39887366 -103899089 + AluJb SINE Alu 1 312 0 260 309 21 32 chr12 39887393 39887487 -103898968 + MIR SINE MIR 54 146 -62 1789 123 13 55 chr12 39888615 39888924 -103897531 - AluSx SINE Alu -16 296 1 711 170 44 15 chr12 39888933 39889092 -103897363 - AluSg/x SINE Alu 0 310 158 979 121 0 0 chr12 39889098 39889238 -103897217 + AluSp/q SINE Alu 169 308 -5 2311 98 0 0 chr12 39889241 39889538 -103896917 + AluSx SINE Alu 1 297 -15 1302 180 0 21 chr12 39889540 39889773 -103896682 + AluJo SINE Alu 85 312 0 2019 139 0 3 chr12 39890305 39890606 -103895849 + AluSx SINE Alu 1 300 -12 947 195 6 0 chr12 39890606 39890780 -103895675 + AluJb SINE Alu 134 308 -4 208 373 59 39 chr12 39890787 39890940 -103895515 - L2 LINE L2 -25 3288 3133 763 240 0 0 chr12 39890964 39891137 -103895318 + MIR SINE MIR 57 228 -34 1974 99 56 14 chr12 39891139 39891423 -103895032 + AluSg SINE Alu 2 297 -13 2128 112 0 0 chr12 39891464 39891780 -103894675 - AluSq SINE Alu 0 316 1 231 36 0 0 chr12 39891780 39891808 -103894647 + (TTA)n Simple_repeat Simple_repeat 2 29 0 606 210 87 14 chr12 39891808 39891946 -103894509 - FRAM SINE Alu -28 148 1 2314 84 0 3 chr12 39891959 39892257 -103894198 - AluSx SINE Alu -15 297 1 1563 160 51 10 chr12 39892284 39892577 -103893878 + AluJb SINE Alu 1 305 -7 2214 108 0 13 chr12 39892577 39892892 -103893563 + AluSx SINE Alu 1 311 -1 2400 70 0 3 chr12 39892924 39893223 -103893232 + AluSq SINE Alu 1 298 -15 2478 62 3 0 chr12 39894457 39894762 -103891693 + AluSp SINE Alu 1 306 -7 380 246 92 84 chr12 39894768 39894872 -103891583 + MIR SINE MIR 8 115 -147 2185 107 3 0 chr12 39894872 39895172 -103891283 - AluSp SINE Alu -10 303 3 380 246 92 84 chr12 39895172 39895209 -103891246 + MIR SINE MIR 115 150 -112 1989 94 22 11 chr12 39895349 39895662 -103890793 - AluSg SINE Alu 0 316 1 1867 160 0 3 chr12 39895666 39895959 -103890496 - AluJo SINE Alu -20 292 1 900 85 0 0 chr12 39896058 39896176 -103890279 + AluSp SINE Alu 1 118 -195 2274 57 0 60 chr12 39896176 39896490 -103889965 - AluSg SINE Alu -15 295 1 1526 90 5 0 chr12 39896490 39896691 -103889764 + AluSp SINE Alu 106 307 -6 488 207 90 41 chr12 39896718 39896863 -103889592 - L2 LINE L2 -243 3070 2919 187 208 139 69 chr12 39897800 39897872 -103888583 - L2 LINE L2 -9 3263 3187 2291 104 0 0 chr12 39897972 39898279 -103888176 - AluSc SINE Alu -2 307 1 2070 102 20 7 chr12 39899276 39899571 -103886884 + AluSx SINE Alu 1 299 -13 672 105 48 19 chr12 39899621 39899726 -103886729 - FRAM SINE Alu -21 155 48 1011 161 0 11 chr12 39900648 39900828 -103885627 - AluSg/x SINE Alu -15 295 118 1890 153 6 13 chr12 39900828 39901005 -103885450 - AluSx SINE Alu -1 311 135 2287 91 3 0 chr12 39901005 39901301 -103885154 - AluSp SINE Alu -16 297 1 1890 153 6 13 chr12 39901301 39901436 -103885019 - AluSx SINE Alu -177 135 1 199 244 22 0 chr12 39901436 39901481 -103884974 - L2 LINE L2 -6 3307 3262 224 266 177 8 chr12 39901706 39901799 -103884656 - L2 LINE L2 -350 2963 2843 2146 101 0 7 chr12 39901799 39902096 -103884359 + AluSx SINE Alu 1 295 -17 224 266 177 8 chr12 39902096 39902126 -103884329 - L2 LINE L2 -470 2843 2819 2094 136 0 0 chr12 39902288 39902596 -103883859 - AluSx SINE Alu -4 308 1 21 0 0 0 chr12 39902610 39902631 -103883824 + AT_rich Low_complexity Low_complexity 1 21 0 732 147 17 0 chr12 39902681 39902797 -103883658 - FLAM_C SINE Alu -15 118 1 242 333 12 12 chr12 39902809 39902890 -103883565 - L2 LINE L2 -5 3308 3228 2055 123 0 13 chr12 39903009 39903309 -103883146 + AluSc SINE Alu 1 296 -13 1866 164 0 3 chr12 39903316 39903620 -103882835 + AluJb SINE Alu 1 303 -9 1660 168 23 26 chr12 39903776 39904079 -103882376 + AluJb SINE Alu 1 302 -10 2182 93 10 13 chr12 39904079 39904380 -103882075 + AluSx SINE Alu 1 300 -12 229 221 0 44 chr12 39904990 39905058 -103881397 + CT-rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr12 39906064 39906085 -103880370 + AT_rich Low_complexity Low_complexity 1 21 0 2157 96 7 3 chr12 39907256 39907559 -103878896 - AluSx SINE Alu -8 304 1 1213 157 78 0 chr12 39907559 39907763 -103878692 - AluJb SINE Alu -8 304 85 1954 114 22 47 chr12 39907763 39908080 -103878375 - AluSx SINE Alu -3 309 1 188 154 96 39 chr12 39908108 39908160 -103878295 - MIR SINE MIR -200 62 8 2263 117 0 0 chr12 39908268 39908575 -103877880 + AluSg SINE Alu 1 307 -3 715 214 0 0 chr12 39908618 39908749 -103877706 - FLAM_A SINE Alu -1 132 2 1130 198 125 94 chr12 39908881 39908982 -103877473 + MLT2B3 LTR ERVL 1 97 -457 1509 196 25 4 chr12 39908982 39909263 -103877192 + AluJb SINE Alu 1 287 -15 1130 198 125 94 chr12 39909263 39909660 -103876795 + MLT2B3 LTR ERVL 97 554 0 2351 72 3 3 chr12 39909682 39909988 -103876467 - AluY SINE Alu -5 306 1 2067 92 0 0 chr12 39910015 39910287 -103876168 - AluSg1 SINE Alu -16 293 22 2290 96 3 6 chr12 39911016 39911329 -103875126 - AluSx SINE Alu 0 312 1 1955 139 7 0 chr12 39911330 39911624 -103874831 - AluSx SINE Alu -16 296 1 1763 170 11 3 chr12 39911676 39911985 -103874470 + AluSx SINE Alu 1 311 0 829 128 8 0 chr12 39911990 39912107 -103874348 - FLAM_C SINE Alu -25 118 1 189 257 0 97 chr12 39912163 39912276 -103874179 - MIR SINE MIR 0 262 161 186 371 29 0 chr12 39912414 39912484 -103873971 + MIR SINE MIR 34 105 -103 987 144 35 6 chr12 39912579 39912753 -103873702 - AluJb SINE Alu -4 308 130 2327 82 0 0 chr12 39912961 39913266 -103873189 + AluY SINE Alu 1 305 -6 2340 74 0 10 chr12 39913338 39913635 -103872820 - AluY SINE Alu -16 295 2 1600 163 39 7 chr12 39913736 39914019 -103872436 - AluJb SINE Alu -20 292 1 2170 139 93 44 chr12 39914038 39914535 -103871920 - LTR61 LTR ERV1 0 595 75 1122 98 0 88 chr12 39914551 39914744 -103871711 - AluSg/x SINE Alu -3 307 132 2300 96 0 0 chr12 39914744 39915047 -103871408 - AluSx SINE Alu -9 303 1 2315 67 3 14 chr12 39915075 39915372 -103871083 - AluSg SINE Alu -16 294 1 304 336 7 56 chr12 39915631 39915774 -103870681 + MIR3 SINE MIR 50 185 -23 186 103 0 0 chr12 39916513 39916542 -103869913 + (CCCG)n Simple_repeat Simple_repeat 2 30 0 1173 234 25 0 chr12 39916951 39917237 -103869218 - L1MB3 LINE L1 -63 6120 5828 1975 125 10 0 chr12 39917237 39917534 -103868921 - AluY SINE Alu -11 300 1 1050 99 0 7 chr12 39917553 39917695 -103868760 + AluSg/x SINE Alu 157 297 -13 2372 93 0 0 chr12 39917698 39918011 -103868444 + AluSq SINE Alu 1 313 0 824 169 19 80 chr12 39918103 39918178 -103868277 + MER20 DNA MER1_type 18 96 -123 2319 84 3 0 chr12 39918178 39918474 -103867981 + AluSp SINE Alu 1 297 -16 824 169 19 80 chr12 39918474 39918611 -103867844 + MER20 DNA MER1_type 96 217 -2 1875 168 3 0 chr12 39918681 39918990 -103867465 + AluJb SINE Alu 1 310 -2 1681 148 46 16 chr12 39918993 39919296 -103867159 + AluJo SINE Alu 1 312 0 2262 113 0 0 chr12 39919302 39919604 -103866851 + AluSg SINE Alu 1 302 -8 2241 97 3 7 chr12 39919997 39920305 -103866150 + AluSg SINE Alu 1 307 -3 1832 147 23 7 chr12 39920308 39920615 -103865840 + AluSx SINE Alu 1 312 0 299 103 0 17 chr12 39920618 39920676 -103865779 + (GGAAA)n Simple_repeat Simple_repeat 2 58 0 663 202 0 0 chr12 39920676 39920785 -103865670 - FLAM_A SINE Alu -33 109 1 219 321 9 19 chr12 39920826 39920932 -103865523 + G-rich Low_complexity Low_complexity 2 106 0 * 242 337 18 12 chr12 39920913 39921076 -103865379 + GA-rich Low_complexity Low_complexity 5 168 0 738 188 0 15 chr12 39921076 39921209 -103865246 + FLAM_C SINE Alu 1 131 -12 24 0 0 0 chr12 39921210 39921234 -103865221 + AT_rich Low_complexity Low_complexity 1 24 0 2098 73 9 88 chr12 39921237 39921577 -103864878 + AluSp SINE Alu 1 313 0 360 198 28 51 chr12 39922261 39922493 -103863962 + (CAGCC)n Simple_repeat Simple_repeat 1 226 0 600 165 0 113 chr12 39922733 39922866 -103863589 + FLAM_A SINE Alu 1 118 -15 1986 123 43 10 chr12 39922871 39923171 -103863284 - AluSq SINE Alu -3 310 1 2222 110 0 0 chr12 39923179 39923478 -103862977 - AluSx SINE Alu -11 301 3 2156 116 0 13 chr12 39923514 39923824 -103862631 + AluSg SINE Alu 1 306 -4 492 309 0 18 chr12 39924477 39924671 -103861784 - MIR SINE MIR 0 262 15 193 322 17 0 chr12 39924719 39924778 -103861677 + L2 LINE L2 3242 3301 -12 1975 134 0 0 chr12 39924778 39925094 -103861361 + AluSx SINE Alu 1 316 0 444 269 71 33 chr12 39925286 39925468 -103860987 + LTR16A1 LTR ERVL 49 237 -220 243 222 0 0 chr12 39925472 39925517 -103860938 + LTR16A1 LTR ERVL 413 457 0 2341 75 0 3 chr12 39926488 39926781 -103859674 - AluSx SINE Alu -20 292 1 1687 117 0 35 chr12 39927004 39927132 -103859323 - AluJo SINE Alu -54 258 141 2171 102 0 0 chr12 39927132 39927451 -103859004 - AluSg SINE Alu 0 319 1 1687 117 0 35 chr12 39927451 39927578 -103858877 - AluJo SINE Alu -171 141 11 807 80 0 27 chr12 39927912 39928024 -103858431 - AluSg/x SINE Alu -8 301 193 1094 139 0 0 chr12 39928041 39928213 -103858242 - AluSg/x SINE Alu 0 302 131 2283 83 0 7 chr12 39928214 39928515 -103857940 - AluSq SINE Alu -13 300 2 189 0 0 0 chr12 39931062 39931083 -103855372 + (CA)n Simple_repeat Simple_repeat 1 21 0 212 267 9 17 chr12 39931174 39931241 -103855214 + (CA)n Simple_repeat Simple_repeat 1 68 -47 1915 78 12 4 chr12 39931241 39931499 -103854956 - AluSp SINE Alu -13 300 41 212 267 9 17 chr12 39931499 39931547 -103854908 + (CA)n Simple_repeat Simple_repeat 68 115 0 378 0 0 0 chr12 39931634 39931676 -103854779 + (CA)n Simple_repeat Simple_repeat 2 43 0 468 228 10 10 chr12 39931884 39931985 -103854470 - MER91C DNA MER1_type -39 101 1 334 262 148 16 chr12 39933262 39933384 -103853071 - MIR3 SINE MIR -65 143 6 239 286 44 22 chr12 39933487 39933578 -103852877 - MIR SINE MIR -29 233 141 1582 168 13 13 chr12 39933579 39933883 -103852572 - AluJb SINE Alu -8 304 1 2161 95 0 0 chr12 39934037 39934370 -103852085 + AluSx SINE Alu 1 333 0 198 203 188 0 chr12 39934431 39934495 -103851960 - MIR SINE MIR -82 126 51 1983 139 3 0 chr12 39935048 39935342 -103851113 - AluSx SINE Alu -17 295 1 735 211 0 8 chr12 39935352 39935368 -103851087 - FLAM_C SINE Alu -170 132 117 1720 96 4 8 chr12 39935368 39935607 -103850848 + AluSc SINE Alu 71 308 -1 735 211 0 8 chr12 39935607 39935723 -103850732 - FLAM_C SINE Alu -185 117 1 845 119 0 0 chr12 39936028 39936146 -103850309 + FLAM_C SINE Alu 1 118 -15 2507 68 0 0 chr12 39936172 39936483 -103849972 + AluY SINE Alu 1 311 0 2136 83 0 23 chr12 39936497 39936799 -103849656 + AluY SINE Alu 1 295 -16 2359 71 6 6 chr12 39936803 39937114 -103849341 + AluSx SINE Alu 1 311 -1 2147 86 0 33 chr12 39937550 39937853 -103848602 + AluSx SINE Alu 1 293 -19 2054 122 0 10 chr12 39937909 39938212 -103848243 - AluSx SINE Alu -12 300 1 861 219 161 46 chr12 39938331 39938724 -103847731 + L2 LINE L2 2440 2945 -368 2099 112 0 10 chr12 39938724 39939027 -103847428 + AluSx SINE Alu 1 300 -12 861 219 161 46 chr12 39939027 39939174 -103847281 + L2 LINE L2 2945 3074 -239 1999 100 60 0 chr12 39939184 39939465 -103846990 - AluSp SINE Alu -15 298 1 1035 83 0 0 chr12 39939467 39939599 -103846856 - AluSp SINE Alu -181 132 1 2199 109 7 0 chr12 39939671 39939973 -103846482 - AluSx SINE Alu -8 304 1 861 187 7 0 chr12 39939978 39940133 -103846322 - AluJb SINE Alu -23 289 134 1727 147 0 74 chr12 39940133 39940459 -103845996 - AluJb SINE Alu -10 302 1 977 152 36 0 chr12 39940521 39940686 -103845769 - AluJo SINE Alu -26 286 116 217 176 59 0 chr12 39940841 39940909 -103845546 + (TTATA)n Simple_repeat Simple_repeat 3 74 0 310 98 9 89 chr12 39940919 39941031 -103845424 + (TAA)n Simple_repeat Simple_repeat 3 105 0 618 167 0 0 chr12 39941031 39941127 -103845328 - AluJ/FLAM SINE Alu -211 101 6 1880 125 0 0 chr12 39941149 39941437 -103845018 - AluSx SINE Alu 0 307 20 674 197 221 28 chr12 39941619 39941707 -103844748 + L1M3 LINE L1 4874 4944 -1202 2400 74 0 3 chr12 39941707 39942016 -103844439 + AluSx SINE Alu 1 308 -4 674 197 221 28 chr12 39942016 39942181 -103844274 + L1M3 LINE L1 4944 5176 -970 586 138 0 0 chr12 39942183 39942270 -103844185 + FLAM_A SINE Alu 42 128 -14 1293 92 12 0 chr12 39942271 39942444 -103844011 + AluSx SINE Alu 1 175 -137 955 130 11 70 chr12 39942473 39942658 -103843797 + AluJo SINE Alu 118 291 -21 1755 153 0 26 chr12 39942660 39942800 -103843655 + AluSx SINE Alu 1 143 -169 2080 124 0 3 chr12 39942800 39943107 -103843348 + AluSg SINE Alu 1 306 -4 1755 153 0 26 chr12 39943107 39943274 -103843181 + AluSx SINE Alu 143 300 -12 581 186 20 55 chr12 39943278 39943414 -103843041 + L1M3 LINE L1 5304 5437 -743 2139 120 3 0 chr12 39943414 39943715 -103842740 + AluSx SINE Alu 1 302 -10 581 186 20 55 chr12 39943715 39943747 -103842708 + L1M3 LINE L1 5437 5469 -711 795 305 23 11 chr12 39944162 39944216 -103842239 + L1PB2 LINE L1 5525 5577 -574 2044 133 0 0 chr12 39944216 39944525 -103841930 + AluSx SINE Alu 1 309 -3 795 305 23 11 chr12 39944525 39944821 -103841634 + L1PB2 LINE L1 5577 5879 -272 * 2828 135 19 70 chr12 39944526 39944821 -103841634 + L1MB3 LINE L1 5589 5898 -285 1937 83 8 0 chr12 39944821 39945100 -103841355 + AluSp SINE Alu 30 310 0 2828 135 19 70 chr12 39945100 39945287 -103841168 + L1MB3 LINE L1 5898 6093 -90 2326 71 0 0 chr12 39945287 39945581 -103840874 + AluSc SINE Alu 1 294 -15 1869 143 0 13 chr12 39945589 39945890 -103840565 + AluJb SINE Alu 1 297 -15 2828 135 19 70 chr12 39945890 39945980 -103840475 + L1MB3 LINE L1 6100 6142 -41 1799 172 7 0 chr12 39945980 39946276 -103840179 + AluJo SINE Alu 1 298 -14 2051 103 41 0 chr12 39946276 39946566 -103839889 + AluSg SINE Alu 1 302 -8 2052 106 7 0 chr12 39946634 39946940 -103839515 - AluSx SINE Alu 0 308 1 239 284 0 68 chr12 39946949 39947023 -103839432 - L2 LINE L2 -18 3254 3186 * 323 291 10 10 chr12 39947008 39947111 -103839344 - MIR SINE MIR 0 262 160 2258 88 3 0 chr12 39947126 39947423 -103839032 - AluSp SINE Alu -14 299 2 288 70 0 0 chr12 39948093 39948136 -103838319 + (TG)n Simple_repeat Simple_repeat 2 44 0 1714 142 14 27 chr12 39948136 39948423 -103838032 - AluJb SINE Alu -27 285 1 627 171 36 0 chr12 39948696 39948807 -103837648 + AluSg/x SINE Alu 188 302 -8 2152 106 3 3 chr12 39948807 39949110 -103837345 + AluSx SINE Alu 1 303 -9 1894 145 13 10 chr12 39949190 39949556 -103836899 + AluSx SINE Alu 1 367 0 972 107 0 0 chr12 39949618 39949749 -103836706 - FLAM_C SINE Alu -12 131 1 26 0 0 0 chr12 39951224 39951250 -103835205 + GC_rich Low_complexity Low_complexity 1 26 0 212 210 16 32 chr12 39951568 39951630 -103834825 + C-rich Low_complexity Low_complexity 4 64 0 245 169 108 0 chr12 39951762 39951827 -103834628 + (CAGAGA)n Simple_repeat Simple_repeat 2 73 0 203 284 0 34 chr12 39952685 39952773 -103833682 + G-rich Low_complexity Low_complexity 2 86 0 38 101 0 0 chr12 39952836 39952965 -103833490 + GC_rich Low_complexity Low_complexity 1 129 0 1565 181 24 3 chr12 39954065 39954358 -103832097 + AluJo SINE Alu 4 302 -10 611 157 11 49 chr12 39954382 39954567 -103831888 + CT-rich Low_complexity Low_complexity 3 180 0 195 42 0 0 chr12 39954572 39954596 -103831859 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 1484 137 0 13 chr12 39954602 39954828 -103831627 - AluSx SINE Alu -37 275 53 637 290 117 9 chr12 39954915 39955129 -103831326 + MIR SINE MIR 25 261 -1 194 329 0 0 chr12 39955133 39955195 -103831260 - L2 LINE L2 -8 3305 3241 234 91 0 0 chr12 39955195 39955228 -103831227 + (ATG)n Simple_repeat Simple_repeat 2 34 0 459 48 0 0 chr12 39955280 39955342 -103831113 + (TC)n Simple_repeat Simple_repeat 1 62 0 24 77 0 0 chr12 39955455 39955507 -103830948 + GC_rich Low_complexity Low_complexity 1 52 0 2247 95 3 0 chr12 39957456 39957760 -103828695 - AluSp SINE Alu -8 305 1 1902 122 7 23 chr12 39958178 39958481 -103827974 + AluSg SINE Alu 1 298 -12 1684 164 0 17 chr12 39958559 39958857 -103827598 - AluJb SINE Alu -19 293 1 808 144 38 15 chr12 39958944 39959076 -103827379 - AluJo SINE Alu -175 137 3 21 0 0 0 chr12 39959198 39959219 -103827236 + AT_rich Low_complexity Low_complexity 1 21 0 2203 74 7 7 chr12 39959237 39959534 -103826921 + AluY SINE Alu 1 297 -14 1791 136 3 48 chr12 39959733 39960042 -103826413 - AluSx SINE Alu -12 300 6 2321 57 23 3 chr12 39960050 39960351 -103826104 - AluYa5 SINE Alu -4 307 1 709 204 0 22 chr12 39960351 39960488 -103825967 - AluSq/x SINE Alu -177 135 2 717 215 0 0 chr12 39960873 39961003 -103825452 - FLAM_A SINE Alu 0 133 4 291 288 103 34 chr12 39961072 39961218 -103825237 - MIR SINE MIR -74 188 33 2102 110 0 0 chr12 39961300 39961590 -103824865 - AluSg SINE Alu -20 290 1 2137 113 0 3 chr12 39961756 39962058 -103824397 + AluSx SINE Alu 1 301 -11 2286 81 3 0 chr12 39962188 39962485 -103823970 - AluSp SINE Alu -15 298 1 2036 90 3 17 chr12 39963872 39964030 -103822425 - AluY SINE Alu -22 289 135 2247 81 3 0 chr12 39964030 39964327 -103822128 - AluSg SINE Alu -12 298 1 2036 90 3 17 chr12 39964327 39964458 -103821997 - AluY SINE Alu -176 135 4 2151 102 0 7 chr12 39964742 39965047 -103821408 + AluSx SINE Alu 1 303 -9 1987 129 0 22 chr12 39965051 39965368 -103821087 + AluSq SINE Alu 1 310 -3 797 244 0 44 chr12 39965458 39965663 -103820792 - AluJo SINE Alu 0 312 117 2233 105 0 3 chr12 39965682 39965995 -103820460 - AluSx SINE Alu 0 312 1 1198 168 35 73 chr12 39966112 39966262 -103820193 - AluJo SINE Alu -34 278 143 2311 79 3 3 chr12 39966262 39966565 -103819890 - AluSp SINE Alu -10 303 1 1198 168 35 73 chr12 39966565 39966700 -103819755 - AluJo SINE Alu -169 143 4 23 33 0 0 chr12 39966799 39966829 -103819626 + AT_rich Low_complexity Low_complexity 1 30 0 497 275 130 35 chr12 39966920 39967120 -103819335 - L1ME2 LINE L1 -35 6129 5911 381 294 108 21 chr12 39967117 39967311 -103819144 - L1MC4 LINE L1 -1031 7011 6801 * 417 243 27 0 chr12 39967321 39967432 -103819023 - AluSg/x SINE Alu 0 310 197 1496 127 9 4 chr12 39967432 39967660 -103818795 + AluSg/x SINE Alu 65 293 -17 787 134 0 39 chr12 39967676 39967803 -103818652 + AluJb SINE Alu 12 133 -179 402 241 57 88 chr12 39967845 39967906 -103818549 - L1MC5 LINE L1 -100 7861 7800 2387 56 3 13 chr12 39967906 39968211 -103818244 - AluY SINE Alu -9 302 1 402 241 57 88 chr12 39968211 39968377 -103818078 - L1MC5 LINE L1 -161 7800 7641 1982 130 0 16 chr12 39968986 39969294 -103817161 - AluSp SINE Alu -8 305 3 2184 97 0 7 chr12 39969305 39969605 -103816850 - AluSc SINE Alu -11 298 1 1663 140 26 0 chr12 39969608 39969907 -103816548 - AluSx SINE Alu 0 310 5 2084 125 10 0 chr12 39970518 39970822 -103815633 - AluSx SINE Alu -4 308 2 1913 138 7 7 chr12 39972557 39972854 -103813601 - AluSx SINE Alu -15 297 1 669 180 8 23 chr12 39972875 39973003 -103813452 - AluJo SINE Alu -178 134 9 2285 108 0 0 chr12 39973009 39973314 -103813141 - AluSx SINE Alu -7 305 1 872 217 0 24 chr12 39973315 39973481 -103812974 - AluJb SINE Alu -17 295 134 1103 159 0 71 chr12 39973804 39974030 -103812425 - AluSg/x SINE Alu -32 278 69 1785 129 42 3 chr12 39974294 39974580 -103811875 - AluSx SINE Alu -15 297 1 2036 96 4 0 chr12 39974620 39974900 -103811555 - AluSp SINE Alu -32 281 1 1682 81 0 69 chr12 39975009 39975270 -103811185 - AluY SINE Alu -3 308 66 1549 169 46 23 chr12 39975270 39975571 -103810884 - AluJb SINE Alu -3 309 1 669 269 72 19 chr12 39975621 39975829 -103810626 + MER20 DNA MER1_type 1 219 0 1829 133 65 0 chr12 39975906 39976199 -103810256 - AluSx SINE Alu 0 312 1 236 366 105 5 chr12 39976411 39976602 -103809853 - MIR SINE MIR -40 222 13 1785 136 14 17 chr12 39976604 39976898 -103809557 - AluSq SINE Alu -20 293 1 2418 70 0 10 chr12 39976932 39977246 -103809209 - AluY SINE Alu 0 311 1 2290 90 0 0 chr12 39977266 39977576 -103808879 - AluY SINE Alu -1 310 1 242 156 16 0 chr12 39979005 39979069 -103807386 + T-rich Low_complexity Low_complexity 1 65 0 189 0 0 0 chr12 39979552 39979573 -103806882 + (CTG)n Simple_repeat Simple_repeat 2 22 0 1853 83 51 14 chr12 39981992 39982268 -103804187 + AluJb SINE Alu 1 286 -26 607 266 55 5 chr12 39991036 39991235 -103795220 + MER20 DNA MER1_type 3 211 -8 1191 205 103 22 chr12 39993083 39993356 -103793099 - AluJo SINE Alu -6 296 2 216 284 81 46 chr12 39993519 39993795 -103792660 - L2 LINE L2 -265 3007 2725 1991 120 23 0 chr12 39993829 39994130 -103792325 - AluSp SINE Alu -5 308 1 1112 127 0 0 chr12 39994131 39994289 -103792166 - AluSc SINE Alu -20 289 132 1535 138 0 117 chr12 39994290 39994444 -103792011 - AluSg SINE Alu -22 288 190 2193 63 28 0 chr12 39994444 39994730 -103791725 - AluY SINE Alu -17 294 1 1535 138 0 117 chr12 39994730 39994901 -103791554 - AluSg SINE Alu -120 190 1 2046 130 0 0 chr12 39994906 39995213 -103791242 - AluSg SINE Alu -3 307 1 629 197 333 9 chr12 39995220 39995433 -103791022 - AluJo SINE Alu -25 287 6 1084 82 13 25 chr12 39996313 39996471 -103789984 - AluSg/x SINE Alu -20 290 135 498 281 87 16 chr12 39996841 39997094 -103789361 + L2 LINE L2 2815 3085 -228 2003 130 0 3 chr12 39997115 39997415 -103789040 - AluJb SINE Alu -11 301 3 248 268 24 12 chr12 39997530 39997612 -103788843 - LTR67 LTR ERVL -61 496 414 2307 100 3 0 chr12 39997874 39998185 -103788270 - AluSp SINE Alu -1 312 1 242 293 43 104 chr12 39998212 39998376 -103788079 - LTR67 LTR ERVL -387 170 17 230 206 22 130 chr12 39998618 39998710 -103787745 - MER5B DNA MER1_type -10 168 87 1944 105 0 8 chr12 39998723 39998989 -103787466 + AluSq SINE Alu 1 264 -49 334 208 135 10 chr12 39999043 39999139 -103787316 - MER5B DNA MER1_type -70 108 1 220 267 33 0 chr12 39999134 39999194 -103787261 - MER5A DNA MER1_type 0 189 128 * 809 175 124 11 chr12 39999220 39999397 -103787058 - AluJb SINE Alu -113 199 3 2049 134 10 16 chr12 39999423 39999555 -103786900 + AluSx SINE Alu 1 132 -180 2285 88 0 13 chr12 39999555 39999863 -103786592 + AluSp SINE Alu 1 304 -9 2227 98 0 0 chr12 39999864 40000161 -103786294 + AluY SINE Alu 1 297 -14 2049 134 10 16 chr12 40000161 40000339 -103786116 + AluSx SINE Alu 131 311 -1 919 195 0 0 chr12 40000666 40000840 -103785615 - AluJo/FRAM SINE Alu -9 303 130 2235 78 16 13 chr12 40000840 40001149 -103785306 - AluSg SINE Alu 0 310 1 2218 102 3 16 chr12 40001162 40001476 -103784979 - AluSp SINE Alu -3 310 1 2431 63 0 0 chr12 40001488 40001791 -103784664 - AluY SINE Alu -8 303 1 223 319 118 15 chr12 40001791 40001921 -103784534 - MIR SINE MIR -71 191 48 236 346 40 0 chr12 40002453 40002554 -103783901 - L2 LINE L2 -6 3307 3203 296 358 29 7 chr12 40002976 40003113 -103783342 + MIR SINE MIR 67 206 -56 799 170 0 15 chr12 40003179 40003314 -103783141 + FLAM_C SINE Alu 1 133 0 2309 96 3 0 chr12 40003414 40003726 -103782729 - AluSp SINE Alu 0 313 1 2004 116 37 0 chr12 40003726 40004019 -103782436 - AluSx SINE Alu -7 305 1 261 51 26 0 chr12 40004187 40004226 -103782229 + Alu SINE Alu 2 41 -259 1733 128 8 0 chr12 40004226 40004476 -103781979 - AluSq SINE Alu -61 252 1 2219 110 0 19 chr12 40004486 40004804 -103781651 - AluSx SINE Alu 0 312 1 569 262 8 8 chr12 40004807 40004929 -103781526 - AluJo/FLAM SINE Alu -185 127 6 2316 87 0 3 chr12 40004941 40005251 -103781204 - AluY SINE Alu -2 309 1 2343 68 3 0 chr12 40005251 40005544 -103780911 - AluSp SINE Alu -19 294 1 2149 107 3 0 chr12 40005574 40005872 -103780583 - AluSx SINE Alu -13 299 1 2125 124 3 6 chr12 40005882 40006196 -103780259 - AluSq SINE Alu 0 313 1 2010 145 0 0 chr12 40006197 40006493 -103779962 - AluSx SINE Alu -16 296 1 2372 73 3 10 chr12 40006498 40006811 -103779644 - AluY SINE Alu 0 311 1 657 151 0 48 chr12 40006836 40006962 -103779493 - FLAM_C SINE Alu -2 141 22 2116 122 0 0 chr12 40007033 40007327 -103779128 - AluSx SINE Alu -15 297 4 1981 135 10 13 chr12 40007327 40007639 -103778816 - AluSx SINE Alu -1 311 1 227 344 92 31 chr12 40007718 40007881 -103778574 - L2 LINE L2 -534 2780 2608 182 31 0 62 chr12 40008474 40008506 -103777949 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 498 101 0 0 chr12 40008515 40008584 -103777871 - AluS SINE Alu -244 69 1 2150 83 0 55 chr12 40008594 40008920 -103777535 - AluSg SINE Alu -2 308 1 760 244 19 0 chr12 40008920 40009080 -103777375 - FRAM SINE Alu -15 161 1 2263 90 10 6 chr12 40009411 40009722 -103776733 - AluSq SINE Alu -1 312 1 339 315 99 37 chr12 40009764 40009926 -103776529 + MIR SINE MIR 7 178 -30 1578 183 55 14 chr12 40009972 40010089 -103776366 + AluJo SINE Alu 1 112 -190 2268 95 0 13 chr12 40010089 40010223 -103776232 + AluSg SINE Alu 1 135 -175 2301 74 0 7 chr12 40010223 40010519 -103775936 + AluY SINE Alu 1 294 -17 2268 95 0 13 chr12 40010519 40010690 -103775765 + AluSg SINE Alu 135 302 -8 1578 183 55 14 chr12 40010690 40010862 -103775593 + AluJo SINE Alu 112 302 0 2179 114 0 0 chr12 40010961 40011269 -103775186 - AluSq SINE Alu 0 313 6 427 192 0 0 chr12 40011303 40011381 -103775074 + MER46C DNA MER2_type 258 335 -3 1232 153 0 5 chr12 40011540 40011729 -103774726 - AluSx SINE Alu -123 189 2 2268 85 3 0 chr12 40011729 40012022 -103774433 - AluSg SINE Alu -16 294 1 1190 78 11 28 chr12 40012024 40012048 -103774407 - L1PA8 LINE L1 -1 6171 6148 2249 106 0 3 chr12 40012048 40012351 -103774104 + AluSq SINE Alu 1 302 -11 1190 78 11 28 chr12 40012351 40012506 -103773949 - L1PA8 LINE L1 -24 6148 5995 441 250 95 42 chr12 40012511 40012563 -103773892 + MER46C DNA MER2_type 159 207 -131 1951 125 0 4 chr12 40012563 40012879 -103773576 - AluSg SINE Alu 0 315 1 2014 130 0 0 chr12 40012880 40013165 -103773290 - AluSx SINE Alu -22 290 6 441 250 95 42 chr12 40013165 40013277 -103773178 + MER46C DNA MER2_type 206 335 -3 209 211 0 0 chr12 40013306 40013344 -103773111 + L2 LINE L2 3225 3262 -10 302 152 0 25 chr12 40013397 40013476 -103772979 + (TCTCTG)n Simple_repeat Simple_repeat 1 77 0 219 69 0 0 chr12 40014692 40014721 -103771734 + (GGGA)n Simple_repeat Simple_repeat 3 31 0 363 252 26 26 chr12 40014980 40015095 -103771360 - MIR SINE MIR -80 182 68 2381 93 0 0 chr12 40015156 40015466 -103770989 - AluSx SINE Alu -2 310 1 551 133 20 0 chr12 40015466 40015564 -103770891 - AluJb SINE Alu -2 310 211 263 292 22 11 chr12 40015591 40015680 -103770775 - MIR SINE MIR -88 174 85 1440 138 24 119 chr12 40015682 40016053 -103770402 - MLT1A1 LTR MaLR -2 363 28 1101 141 141 0 chr12 40016169 40016353 -103770102 + AluJb SINE Alu 84 293 -19 1047 137 11 6 chr12 40016381 40016556 -103769899 + AluSg/x SINE Alu 123 298 -14 2188 110 0 0 chr12 40016567 40016866 -103769589 + AluSg SINE Alu 9 307 -3 2227 106 3 0 chr12 40016868 40017169 -103769286 + AluSx SINE Alu 3 304 -8 333 291 20 81 chr12 40017228 40017376 -103769079 - L1MC4a LINE L1 -1849 5959 5821 2111 105 0 3 chr12 40017381 40017689 -103768766 - AluSq SINE Alu 0 308 2 1506 183 10 27 chr12 40018007 40018307 -103768148 + AluJo SINE Alu 1 295 -17 2183 99 10 3 chr12 40018313 40018615 -103767840 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr12 40019629 40019651 -103766804 + GC_rich Low_complexity Low_complexity 1 22 0 213 288 0 38 chr12 40021597 40021677 -103764778 + MIR SINE MIR 64 140 -122 2153 122 0 0 chr12 40021688 40022000 -103764455 - AluSx SINE Alu 0 312 1 1192 179 4 25 chr12 40022000 40022235 -103764220 + AluJb SINE Alu 71 300 -12 181 143 0 0 chr12 40022246 40022274 -103764181 + L2 LINE L2 3255 3282 -31 358 258 30 22 chr12 40022372 40022542 -103763913 - MIR SINE MIR -62 146 3 2061 115 0 0 chr12 40022658 40022944 -103763511 - AluSx SINE Alu -26 286 1 789 243 47 0 chr12 40023049 40023218 -103763237 - AluJo SINE Alu -30 282 106 296 319 35 9 chr12 40023427 40023543 -103762912 + MIR SINE MIR 41 159 -103 1508 87 5 0 chr12 40023935 40024130 -103762325 - AluY SINE Alu -115 196 1 1787 148 3 7 chr12 40024130 40024414 -103762041 - AluJo SINE Alu -29 283 1 2137 117 3 10 chr12 40024447 40024620 -103761835 - AluSx SINE Alu -5 307 135 2336 70 7 0 chr12 40024620 40024920 -103761535 - AluSp SINE Alu -11 302 1 2137 117 3 10 chr12 40024920 40025055 -103761400 - AluSx SINE Alu -177 135 1 196 287 183 17 chr12 40025058 40025173 -103761282 + MIR SINE MIR 129 262 0 * 431 269 243 53 chr12 40025171 40025310 -103761145 - L2 LINE L2 -1 3312 3201 1802 123 36 0 chr12 40025310 40025586 -103760869 + AluJo SINE Alu 12 297 -15 431 269 243 53 chr12 40025586 40025656 -103760799 - L2 LINE L2 -112 3201 3146 2366 81 0 0 chr12 40025656 40025964 -103760491 - AluY SINE Alu -3 308 1 431 269 243 53 chr12 40025964 40026091 -103760364 - L2 LINE L2 -167 3146 2911 2195 126 0 0 chr12 40026653 40026962 -103759493 + AluSg SINE Alu 1 309 -1 376 300 18 0 chr12 40027073 40027183 -103759272 + MIR SINE MIR 97 208 -54 1567 156 3 59 chr12 40027268 40027426 -103759029 - AluJo SINE Alu -39 273 137 2253 75 0 3 chr12 40027426 40027718 -103758737 + AluSc SINE Alu 1 291 -18 1567 156 3 59 chr12 40027718 40027848 -103758607 - AluJo SINE Alu -175 137 1 238 282 47 0 chr12 40027881 40027966 -103758489 - L2 LINE L2 -2 3311 3223 328 363 66 35 chr12 40028018 40028125 -103758330 + L1ME4a LINE L1 5645 5747 -374 1887 81 4 0 chr12 40028125 40028372 -103758083 + AluSx SINE Alu 57 304 -8 328 363 66 35 chr12 40028372 40028490 -103757965 + L1ME4a LINE L1 5747 5877 -244 1976 155 0 13 chr12 40028841 40029157 -103757298 - AluJb SINE Alu 0 312 1 304 314 49 10 chr12 40029760 40029862 -103756593 - MIR SINE MIR -105 157 52 1848 154 10 0 chr12 40030153 40030445 -103756010 + AluJo SINE Alu 1 295 -17 757 100 154 0 chr12 40030445 40030555 -103755900 + AluSg SINE Alu 1 127 -183 * 1032 8 0 0 chr12 40030554 40030673 -103755782 + AluY SINE Alu 184 302 -9 1153 109 0 52 chr12 40030673 40030866 -103755589 + AluSq SINE Alu 121 303 -10 208 313 0 0 chr12 40030975 40031039 -103755416 - L2 LINE L2 -321 2992 2929 1772 167 3 3 chr12 40031352 40031651 -103754804 - AluJo SINE Alu -13 299 1 1661 164 14 10 chr12 40031685 40031978 -103754477 + AluJb SINE Alu 1 294 -18 2265 103 3 3 chr12 40032829 40033141 -103753314 - AluSx SINE Alu 0 312 1 2265 75 10 3 chr12 40033441 40033736 -103752719 - AluSq SINE Alu -12 301 5 2436 57 7 0 chr12 40033808 40034106 -103752349 + AluY SINE Alu 1 300 -11 25 0 0 0 chr12 40034189 40034214 -103752241 + AT_rich Low_complexity Low_complexity 1 25 0 2370 91 0 0 chr12 40034361 40034669 -103751786 - AluSq SINE Alu -3 310 3 1780 163 0 3 chr12 40034679 40034980 -103751475 - AluSx SINE Alu -12 300 1 354 177 52 21 chr12 40035008 40035104 -103751351 - L1MD3 LINE L1 -24 7971 7873 587 141 54 0 chr12 40035113 40035205 -103751250 + FLAM_A SINE Alu 29 125 -17 2190 112 0 3 chr12 40035212 40035515 -103750940 + AluSx SINE Alu 1 302 -10 1694 170 45 0 chr12 40035561 40035850 -103750605 + AluSx SINE Alu 1 302 -10 1855 136 34 0 chr12 40035854 40036149 -103750306 + AluJo SINE Alu 1 305 -7 29 0 0 0 chr12 40036196 40036225 -103750230 + AT_rich Low_complexity Low_complexity 1 29 0 1031 179 109 116 chr12 40036292 40036521 -103749934 - L1MD3 LINE L1 -219 7776 7550 2191 79 16 0 chr12 40036521 40036825 -103749630 - AluY SINE Alu -2 309 1 1031 179 109 116 chr12 40036825 40036991 -103749464 - L1MD3 LINE L1 -445 7550 7384 1676 167 23 10 chr12 40037001 40037301 -103749154 - AluJb SINE Alu -8 304 1 463 252 95 0 chr12 40037303 40037450 -103749005 - L1M4 LINE L1 -1224 4922 4762 2178 104 23 7 chr12 40037475 40037782 -103748673 + AluSx SINE Alu 1 312 0 715 152 18 0 chr12 40037783 40037895 -103748560 - AluJb SINE Alu -194 118 5 744 154 34 0 chr12 40037907 40038056 -103748399 - L1M4 LINE L1 -1386 4760 4607 231 157 0 78 chr12 40038090 40038164 -103748291 - Alu SINE Alu 0 303 234 * 277 148 0 22 chr12 40038132 40038190 -103748265 - Alu SINE Alu -260 42 2 252 321 78 42 chr12 40038218 40038353 -103748102 + L2 LINE L2 2584 2730 -584 1784 142 3 3 chr12 40038353 40038635 -103747820 + AluJo SINE Alu 1 282 -30 252 321 78 42 chr12 40038635 40038692 -103747763 + L2 LINE L2 2730 2783 -531 753 271 72 49 chr12 40038702 40038974 -103747481 + L2 LINE L2 2888 3173 -140 2099 97 13 3 chr12 40038974 40039272 -103747183 - AluSx SINE Alu -11 301 1 753 271 72 49 chr12 40039272 40039390 -103747065 + L2 LINE L2 3173 3287 -26 813 208 0 0 chr12 40039599 40039775 -103746680 + AluSg/x SINE Alu 137 312 0 850 162 0 0 chr12 40039822 40039964 -103746491 + FLAM_C SINE Alu 1 142 -1 2098 111 0 26 chr12 40040067 40040374 -103746081 + AluSq SINE Alu 1 299 -14 2363 64 0 16 chr12 40040374 40040685 -103745770 + AluY SINE Alu 1 306 -5 1562 167 67 6 chr12 40040748 40041060 -103745395 - L1MB7 LINE L1 -10 6174 5844 2047 107 6 28 chr12 40041060 40041378 -103745077 + AluSx SINE Alu 1 311 -1 2810 216 70 29 chr12 40041378 40041852 -103744603 - L1M4 LINE L1 -2600 3546 3093 2256 99 0 3 chr12 40041852 40042164 -103744291 - AluSx SINE Alu -1 311 1 2810 216 70 29 chr12 40042164 40042635 -103743820 - L1M4 LINE L1 -3053 3093 2562 246 154 0 0 chr12 40042667 40042706 -103743749 - L1M4 LINE L1 -3572 2574 2536 1830 168 10 3 chr12 40042706 40043016 -103743439 - AluJo SINE Alu 0 312 1 2476 52 0 7 chr12 40043031 40043338 -103743117 - AluY SINE Alu -6 305 1 357 206 0 17 chr12 40043362 40043515 -103742940 + CT-rich Low_complexity Low_complexity 1 150 0 236 317 69 30 chr12 40043899 40044000 -103742455 - MIR SINE MIR -51 211 107 281 238 21 15 chr12 40044245 40044322 -103742133 + MIR SINE MIR 78 159 -49 1937 139 26 0 chr12 40044391 40044693 -103741762 - AluJb SINE Alu -2 310 1 421 244 70 9 chr12 40044713 40044828 -103741627 - L2 LINE L2 -7 3265 3144 1892 104 39 42 chr12 40044880 40045016 -103741439 + AluSx SINE Alu 1 136 -176 2507 71 0 0 chr12 40045016 40045325 -103741130 + AluY SINE Alu 1 309 -2 1892 104 39 42 chr12 40045325 40045496 -103740959 + AluSx SINE Alu 136 307 -5 1010 173 0 0 chr12 40045496 40045658 -103740797 + AluSg/x SINE Alu 132 293 -17 241 297 54 0 chr12 40046734 40046808 -103739647 - L1MB7 LINE L1 -340 5781 5704 1286 126 146 32 chr12 40046947 40047194 -103739261 + AluJo SINE Alu 18 292 -20 456 287 103 51 chr12 40047198 40047445 -103739010 - L2 LINE L2 -147 3166 2896 2083 116 7 7 chr12 40047445 40047748 -103738707 - AluSx SINE Alu -9 303 1 456 287 103 51 chr12 40047748 40047831 -103738624 - L2 LINE L2 -417 2896 2819 2079 113 14 0 chr12 40047909 40048202 -103738253 - AluSp SINE Alu -11 302 6 2183 104 6 25 chr12 40048206 40048524 -103737931 - AluSx SINE Alu 0 312 1 705 150 87 39 chr12 40048527 40048654 -103737801 - AluJo/FLAM SINE Alu -169 133 1 352 253 33 0 chr12 40048718 40048809 -103737646 - MIR SINE MIR -77 185 92 187 379 10 10 chr12 40049120 40049223 -103737232 - L2 LINE L2 -23 3290 3188 822 319 101 4 chr12 40049411 40049875 -103736580 - L2 LINE L2 -340 2974 2466 191 274 95 0 chr12 40050158 40050242 -103736213 + MIR SINE MIR 53 144 -118 418 309 12 31 chr12 40051011 40051173 -103735282 - MIR SINE MIR -91 171 13 * 435 233 0 0 chr12 40051164 40051250 -103735205 - L2 LINE L2 -2 3311 3226 197 257 14 29 chr12 40051363 40051433 -103735022 - L2 LINE L2 -280 2992 2924 1832 166 0 0 chr12 40051684 40051979 -103734476 + AluJo SINE Alu 1 295 -17 768 229 25 0 chr12 40051979 40052136 -103734319 + AluJo/FRAM SINE Alu 134 294 -18 1709 94 121 15 chr12 40052136 40052401 -103734054 + AluSg SINE Alu 1 293 -17 180 250 17 33 chr12 40052402 40052462 -103733993 - L2 LINE L2 -10 3303 3245 316 299 45 8 chr12 40052682 40052816 -103733639 - MIR SINE MIR -93 169 31 3609 102 28 0 chr12 40053298 40053797 -103732658 - LTR10D LTR ERV1 0 513 1 328 252 103 0 chr12 40054153 40054260 -103732195 + MIR SINE MIR 80 197 -65 346 184 17 0 chr12 40054260 40054338 -103732117 + FLAM SINE Alu 74 125 -8 1202 182 101 52 chr12 40054346 40054632 -103731823 + AluJo SINE Alu 1 300 -2 197 314 0 29 chr12 40054633 40054703 -103731752 + MIR SINE MIR 192 259 -3 280 171 0 29 chr12 40054866 40054936 -103731519 + C-rich Low_complexity Low_complexity 3 70 0 1970 138 7 3 chr12 40055139 40055443 -103731012 - AluSq SINE Alu -7 306 2 2057 99 14 3 chr12 40055745 40056038 -103730417 - AluSc SINE Alu -13 296 1 580 256 30 55 chr12 40056042 40056068 -103730387 - L1ME2 LINE L1 -38 6126 6101 1822 152 7 7 chr12 40056068 40056371 -103730084 - AluJo SINE Alu -1 311 9 580 256 30 55 chr12 40056371 40056543 -103729912 - L1ME2 LINE L1 -63 6101 5933 611 285 20 5 chr12 40056566 40056766 -103729689 + L1ME1 LINE L1 5648 5850 -316 1124 127 12 0 chr12 40056948 40057114 -103729341 - AluSg/x SINE Alu -10 300 133 2137 109 0 28 chr12 40057130 40057451 -103729004 - AluSx SINE Alu 0 312 1 225 262 0 0 chr12 40057919 40057980 -103728475 + MIR SINE MIR 84 144 -118 339 291 90 64 chr12 40058994 40059150 -103727305 + MER20B DNA MER1_type 77 242 -541 2263 84 13 6 chr12 40059150 40059461 -103726994 + AluSq SINE Alu 1 313 0 339 291 90 64 chr12 40059461 40059538 -103726917 + MER20B DNA MER1_type 242 316 -467 673 121 16 16 chr12 40059726 40059850 -103726605 + CT-rich Low_complexity Low_complexity 1 124 0 2174 86 7 3 chr12 40059856 40060147 -103726308 - AluSx SINE Alu -20 292 1 1016 192 50 0 chr12 40060247 40060409 -103726046 - AluJb SINE Alu -18 294 119 252 0 0 0 chr12 40060409 40060437 -103726018 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 1016 192 50 0 chr12 40060437 40060472 -103725983 - AluJb SINE Alu -193 119 87 228 195 0 0 chr12 40060500 40060541 -103725914 - MER3 DNA MER1_type -153 56 16 327 195 134 0 chr12 40060549 40060631 -103725824 - L1MB8 LINE L1 -156 6022 5930 1950 124 3 23 chr12 40061332 40061639 -103724816 - AluSx SINE Alu -11 301 1 1436 164 23 71 chr12 40061961 40062271 -103724184 - AluJo SINE Alu -12 300 6 2172 89 0 0 chr12 40062289 40062602 -103723853 - AluSc SINE Alu 0 313 1 229 259 101 6 chr12 40062950 40063067 -103723388 - MIR SINE MIR -58 150 17 1957 117 20 10 chr12 40063354 40063653 -103722802 - AluSx SINE Alu -10 302 1 1620 5 0 0 chr12 40064216 40064420 -103722035 + (TTCC)n Simple_repeat Simple_repeat 1 204 0 1616 114 35 38 chr12 40164997 40165286 -103621169 - SVA Other Other -1098 288 1 314 196 124 21 chr12 40165334 40165431 -103621024 + L1MC4a LINE L1 6074 6180 -1628 237 333 0 0 chr12 40165813 40165888 -103620567 - L2 LINE L2 -5 3267 3193 198 366 20 10 chr12 40166098 40166199 -103620256 - MIR SINE MIR -133 129 28 198 0 0 0 chr12 40167329 40167351 -103619104 + (CCA)n Simple_repeat Simple_repeat 2 23 0 270 0 0 0 chr12 40167886 40167916 -103618539 + (TG)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr12 40167916 40167937 -103618518 + GC_rich Low_complexity Low_complexity 1 21 0 1965 130 14 0 chr12 40168051 40168335 -103618120 - AluSx SINE Alu -24 288 1 1470 189 0 50 chr12 40168777 40169078 -103617377 + AluJb SINE Alu 12 297 -15 579 121 0 0 chr12 40169832 40169915 -103616540 - AluY SINE Alu -227 84 2 201 263 337 0 chr12 40169916 40170011 -103616444 - L2 LINE L2 -6 3307 3181 1748 175 3 16 chr12 40170234 40170548 -103615907 + AluJb SINE Alu 1 310 -2 2323 92 0 3 chr12 40170576 40170870 -103615585 + AluSg SINE Alu 1 293 -17 343 218 36 91 chr12 40170876 40170986 -103615469 - MIR SINE MIR -151 111 8 239 282 137 26 chr12 40171476 40171593 -103614862 - L2 LINE L2 -22 3250 3121 3281 250 76 28 chr12 40171756 40172207 -103614248 - L1M4 LINE L1 -1229 4917 4489 2149 120 0 17 chr12 40172207 40172508 -103613947 - AluSx SINE Alu -16 296 1 3281 250 76 28 chr12 40172508 40173216 -103613239 - L1M4 LINE L1 -1657 4489 3703 449 155 19 10 chr12 40173219 40173322 -103613133 - AluSp/q SINE Alu -15 298 195 298 290 0 11 chr12 40175327 40175420 -103611035 - MIR SINE MIR -4 258 167 1486 201 7 27 chr12 40175423 40175716 -103610739 - AluJo SINE Alu -24 288 2 183 184 0 0 chr12 40177328 40177366 -103609089 + (TA)n Simple_repeat Simple_repeat 1 38 0 499 232 118 16 chr12 40177371 40177617 -103608838 - Charlie7 DNA MER1_type -489 2123 1853 1302 72 0 0 chr12 40177678 40177887 -103608568 + AluSc SINE Alu 128 336 0 363 230 183 0 chr12 40177887 40178013 -103608442 - Charlie7 DNA MER1_type -764 1848 1700 2166 114 0 10 chr12 40178613 40178911 -103607544 + AluSx SINE Alu 1 295 -17 664 236 6 32 chr12 40180670 40180827 -103605628 - FRAM SINE Alu -24 152 1 1426 216 137 12 chr12 40181453 40181870 -103604585 - L1MC4 LINE L1 -13 8029 7561 715 224 95 76 chr12 40181883 40182187 -103604268 - L1ME2 LINE L1 -9 6155 5846 477 296 37 7 chr12 40186717 40186852 -103599603 - MIR SINE MIR -106 156 18 2038 128 14 7 chr12 40186976 40187272 -103599183 + AluSx SINE Alu 1 298 -14 1209 267 109 14 chr12 40187974 40187994 -103598461 - L2 LINE L2 0 3313 3296 2063 141 3 0 chr12 40187994 40188300 -103598155 - AluSq SINE Alu -6 307 1 1209 267 109 14 chr12 40188300 40188709 -103597746 - L2 LINE L2 -17 3296 2843 1811 69 37 8 chr12 40188727 40188972 -103597483 + AluY SINE Alu 55 306 -5 264 256 208 24 chr12 40188986 40189154 -103597301 + MER102a DNA MER1_type 128 326 -4 215 298 0 36 chr12 40189184 40189268 -103597187 + MIR SINE MIR 18 98 -164 281 45 0 23 chr12 40189278 40189322 -103597133 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 256 45 0 45 chr12 40189322 40189366 -103597089 + (TCCC)n Simple_repeat Simple_repeat 2 43 0 1360 203 19 38 chr12 40189368 40189543 -103596912 - AluJo SINE Alu 0 312 144 2240 82 3 0 chr12 40189543 40189835 -103596620 - AluSg SINE Alu -17 293 1 1360 203 19 38 chr12 40189835 40189975 -103596480 - AluJo SINE Alu -168 144 3 287 309 8 24 chr12 40189977 40190103 -103596352 + MIR SINE MIR 91 214 -48 366 274 32 0 chr12 40191885 40191980 -103594475 + MIR SINE MIR 81 178 -84 2367 71 3 10 chr12 40192409 40192717 -103593738 - AluSc SINE Alu -3 306 1 412 287 83 6 chr12 40193712 40193869 -103592586 - MIR3 SINE MIR -24 184 16 688 233 48 56 chr12 40194260 40194446 -103592009 + MIR SINE MIR 2 187 -75 2139 82 9 38 chr12 40194446 40194763 -103591692 + AluSx SINE Alu 1 308 -4 688 233 48 56 chr12 40194763 40194825 -103591630 + MIR SINE MIR 187 248 -14 383 267 153 8 chr12 40194872 40195003 -103591452 - MIR3 SINE MIR -18 190 41 2115 107 3 23 chr12 40197355 40197665 -103588790 - AluSp SINE Alu -9 304 1 2285 98 0 0 chr12 40197735 40198032 -103588423 - AluSx SINE Alu -15 297 1 1664 207 44 53 chr12 40198044 40198518 -103587937 - L2 LINE L2 -1667 1647 1178 1119 239 153 65 chr12 40198518 40199054 -103587401 - L2 LINE L2 -1509 1805 1223 807 153 23 15 chr12 40199724 40199855 -103586600 + FLAM_C SINE Alu 2 133 0 392 292 130 32 chr12 40199921 40200075 -103586380 - MER102a DNA MER1_type -9 321 153 1943 123 0 0 chr12 40200077 40200346 -103586109 - AluSx SINE Alu -16 296 28 686 115 10 0 chr12 40200348 40200444 -103586011 + AluSg SINE Alu 2 98 -212 353 211 63 32 chr12 40202407 40202502 -103583953 - L2 LINE L2 -32 3240 3143 218 316 0 0 chr12 40203595 40203652 -103582803 - MIR SINE MIR -116 92 36 694 289 34 5 chr12 40203760 40203964 -103582491 + MIR SINE MIR 48 257 -5 542 215 220 10 chr12 40203892 40204084 -103582371 - MIR SINE MIR -1 261 31 * 233 206 15 73 chr12 40204086 40204154 -103582301 + MIR SINE MIR 187 250 -12 502 208 19 0 chr12 40206218 40206324 -103580131 - MIR SINE MIR -108 154 47 705 283 42 17 chr12 40206407 40206577 -103579878 + MIR SINE MIR 13 192 -70 2095 111 0 41 chr12 40206577 40206719 -103579736 + AluSg SINE Alu 2 148 -162 2368 62 3 13 chr12 40206719 40207025 -103579430 + AluY SINE Alu 1 303 -8 2095 111 0 41 chr12 40207025 40207198 -103579257 + AluSg SINE Alu 148 304 -6 705 283 42 17 chr12 40207198 40207267 -103579188 + MIR SINE MIR 192 258 -4 197 50 0 75 chr12 40207325 40207365 -103579090 + (T)n Simple_repeat Simple_repeat 1 37 0 1447 107 5 0 chr12 40207468 40207673 -103578782 + AluSg SINE Alu 103 308 -4 723 210 0 21 chr12 40207675 40207818 -103578637 - FRAM SINE Alu -36 140 1 578 202 48 8 chr12 40207833 40207957 -103578498 - MER90 LTR ERV1 -81 533 405 713 182 23 0 chr12 40207957 40208089 -103578366 + AluSg/x SINE Alu 175 309 0 1251 207 50 28 chr12 40208108 40208431 -103578024 - MER90 LTR ERV1 -245 330 1 2165 99 10 13 chr12 40208747 40209059 -103577396 + AluSx SINE Alu 1 311 -1 1832 131 7 24 chr12 40209168 40209466 -103576989 + AluJb SINE Alu 1 293 -19 2243 99 7 0 chr12 40209886 40210189 -103576266 - AluSx SINE Alu -7 305 1 265 130 65 0 chr12 40210437 40210483 -103575972 + AluSp SINE Alu 123 171 -132 680 110 60 0 chr12 40210483 40210583 -103575872 + AluSg/x SINE Alu 103 208 -102 180 0 0 0 chr12 40210605 40210625 -103575830 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 297 283 89 73 chr12 40210641 40210690 -103575765 + L2 LINE L2 2714 2761 -553 1717 133 10 68 chr12 40210690 40210999 -103575456 - AluJb SINE Alu -21 291 1 1826 150 0 16 chr12 40210999 40211304 -103575151 - AluJo SINE Alu -11 301 1 297 283 89 73 chr12 40211304 40211444 -103575011 + L2 LINE L2 2760 2907 -407 254 298 0 12 chr12 40211445 40211529 -103574926 + MER112 DNA MER1_type 2 84 -176 347 200 156 0 chr12 40211574 40211654 -103574801 + MER112 DNA MER1_type 66 132 -128 2232 84 37 0 chr12 40211654 40211952 -103574503 - AluSc SINE Alu 0 309 1 347 200 156 0 chr12 40211952 40212006 -103574449 + MER112 DNA MER1_type 132 221 -39 534 277 153 59 chr12 40212028 40212382 -103574073 + L2 LINE L2 2927 3313 0 217 319 53 0 chr12 40212385 40212479 -103573976 + MIR3 SINE MIR 91 189 -19 376 210 29 123 chr12 40212851 40212970 -103573485 + MIR SINE MIR 8 114 -148 2194 93 0 3 chr12 40212970 40213261 -103573194 - AluSg SINE Alu -20 290 1 376 210 29 123 chr12 40213261 40213279 -103573176 + MIR SINE MIR 114 132 -130 2067 143 0 13 chr12 40213287 40213602 -103572853 - AluSx SINE Alu 0 312 2 289 274 36 12 chr12 40213792 40213876 -103572579 + MIR SINE MIR 46 131 -131 1811 128 0 0 chr12 40214063 40214329 -103572126 + AluJo SINE Alu 26 291 -21 1981 120 0 27 chr12 40214332 40214633 -103571822 + AluSq SINE Alu 2 294 -19 211 224 0 41 chr12 40214838 40214887 -103571568 + G-rich Low_complexity Low_complexity 4 50 0 626 190 0 0 chr12 40214995 40215095 -103571360 - FLAM_A SINE Alu -42 100 1 976 99 8 0 chr12 40215291 40215422 -103571033 + FLAM_C SINE Alu 2 133 0 281 188 0 0 chr12 40215438 40215486 -103570969 + MER44D DNA MER2_type 1 48 -657 1582 141 7 41 chr12 40215535 40215569 -103570886 + MER44D DNA MER2_type 49 83 -650 2309 77 6 13 chr12 40215569 40215880 -103570575 + AluSp SINE Alu 1 309 -4 1582 141 7 41 chr12 40215880 40216115 -103570340 + MER44D DNA MER2_type 83 309 -424 1092 125 12 0 chr12 40216115 40216283 -103570172 + AluSg/x SINE Alu 134 303 -9 1535 93 4 54 chr12 40216283 40216414 -103570041 + MER44D DNA MER2_type 301 437 -2050 2198 78 10 7 chr12 40216414 40216708 -103569747 + AluSc SINE Alu 1 295 -14 1535 93 4 54 chr12 40216708 40216835 -103569620 + MER44D DNA MER2_type 437 601 -4 811 219 122 0 chr12 40216846 40217051 -103569404 - MIR SINE MIR -30 232 3 227 270 48 0 chr12 40217073 40217136 -103569319 - tRNA-Gly-GGG tRNA tRNA -3 71 6 2293 89 3 13 chr12 40217307 40217621 -103568834 + AluSq SINE Alu 1 311 -2 990 176 5 75 chr12 40217630 40217818 -103568637 + FAM SINE Alu 1 175 0 189 340 135 28 chr12 40217859 40218147 -103568308 + L2 LINE L2 2804 3122 -150 806 174 0 14 chr12 40218183 40218327 -103568128 + FLAM_C SINE Alu 2 143 0 338 314 131 0 chr12 40218327 40218464 -103567991 + L2 LINE L2 3152 3306 -7 538 313 125 9 chr12 40218472 40218696 -103567759 - L3 LINE CR1 -21 1556 1307 2343 97 0 0 chr12 40218894 40219204 -103567251 - AluSx SINE Alu -2 310 1 2018 108 0 3 chr12 40219487 40219774 -103566681 - AluSg SINE Alu -24 286 1 507 268 66 20 chr12 40219986 40220184 -103566271 + MIR SINE MIR 36 242 -20 539 223 62 0 chr12 40221485 40221597 -103564858 + MIR SINE MIR 59 177 -85 2847 169 35 53 chr12 40222419 40222594 -103563861 - MER41D LTR ERV1 0 557 380 2211 103 3 10 chr12 40222594 40222904 -103563551 - AluSq SINE Alu -5 308 1 2847 169 35 53 chr12 40222904 40223218 -103563237 - MER41D LTR ERV1 -177 380 77 1855 145 3 13 chr12 40223218 40223528 -103562927 - AluSx SINE Alu -5 307 1 2847 169 35 53 chr12 40223528 40223604 -103562851 - MER41D LTR ERV1 -480 77 1 1865 188 268 24 chr12 40223726 40224226 -103562229 - LTR29 LTR ERV1 0 622 1 1415 368 0 17 chr12 40224486 40224782 -103561673 + AluSq SINE Alu 3 293 -20 2118 115 10 0 chr12 40224790 40225095 -103561360 - AluSx SINE Alu -4 308 1 285 29 0 0 chr12 40225568 40225602 -103560853 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1845 143 3 3 chr12 40225607 40225893 -103560562 - AluJb SINE Alu -21 291 6 226 170 21 0 chr12 40225893 40225940 -103560515 - L1MB8 LINE L1 -33 6145 6098 * 890 170 14 30 chr12 40225916 40226132 -103560323 - L1MB8 LINE L1 -163 6015 5827 2041 96 4 4 chr12 40226149 40226470 -103559985 - AluSx SINE Alu 0 321 1 804 174 0 14 chr12 40226515 40226653 -103559802 - AluJo SINE Alu -176 136 1 180 0 0 0 chr12 40226727 40226747 -103559708 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2049 113 0 0 chr12 40226753 40227067 -103559388 + AluSp SINE Alu 1 314 0 510 299 26 7 chr12 40227084 40227238 -103559217 - MIR3 SINE MIR -49 159 3 2251 106 0 0 chr12 40227663 40227966 -103558489 + AluSg SINE Alu 1 303 -7 2054 125 0 0 chr12 40228603 40228900 -103557555 + AluSx SINE Alu 5 301 -11 2351 93 0 0 chr12 40229142 40229444 -103557011 + AluSx SINE Alu 1 302 -10 2289 64 3 0 chr12 40229874 40230212 -103556243 + AluSp SINE Alu 1 339 0 841 115 0 83 chr12 40230307 40230463 -103555992 + FLAM_C SINE Alu 1 143 0 180 0 0 0 chr12 40230511 40230531 -103555924 + (CA)n Simple_repeat Simple_repeat 2 21 0 208 239 0 0 chr12 40231144 40231190 -103555265 + (CCTG)n Simple_repeat Simple_repeat 2 47 0 396 167 0 0 chr12 40232328 40232400 -103554055 + (CA)n Simple_repeat Simple_repeat 2 73 0 394 269 55 28 chr12 40234846 40234991 -103551464 - MIR3 SINE MIR -57 151 3 1749 126 7 52 chr12 40236081 40236391 -103550064 + AluJo SINE Alu 1 296 -16 2046 129 3 7 chr12 40236403 40236706 -103549749 + AluSx SINE Alu 3 304 -8 1201 113 0 6 chr12 40236706 40236874 -103549581 + AluSx SINE Alu 1 167 -145 1312 197 15 8 chr12 40236920 40237179 -103549276 - AluJb SINE Alu -51 261 1 1240 79 0 6 chr12 40237245 40237410 -103549045 - AluSq SINE Alu -32 281 118 1232 54 18 6 chr12 40237510 40237676 -103548779 + AluY SINE Alu 144 311 0 796 248 137 19 chr12 40237728 40237883 -103548572 - AluJo SINE Alu 0 302 167 26 74 0 0 chr12 40237883 40237937 -103548518 + AT_rich Low_complexity Low_complexity 1 54 0 796 248 137 19 chr12 40237937 40237998 -103548457 - AluJo SINE Alu -135 167 1 514 158 11 32 chr12 40237999 40238094 -103548361 - FLAM_A SINE Alu -49 93 1 215 205 218 39 chr12 40238095 40238173 -103548282 - MER5B DNA MER1_type -72 106 15 186 43 0 0 chr12 40238217 40238240 -103548215 + (A)n Simple_repeat Simple_repeat 1 23 0 824 153 0 8 chr12 40239548 40239679 -103546776 - FLAM_C SINE Alu 0 133 4 1087 181 62 19 chr12 40239867 40240077 -103546378 - MER20 DNA MER1_type 0 219 1 2073 93 4 0 chr12 40240384 40240687 -103545768 + AluSg SINE Alu 1 304 0 532 279 63 16 chr12 40240697 40240766 -103545689 - MIR SINE MIR -13 249 185 799 233 37 74 chr12 40240766 40240818 -103545637 - MIR SINE MIR -1 261 209 1665 131 36 49 chr12 40240818 40241123 -103545332 - AluJb SINE Alu -11 301 1 799 233 37 74 chr12 40241123 40241187 -103545268 - MIR SINE MIR -53 209 144 1879 94 73 0 chr12 40241187 40241341 -103545114 - AluSp SINE Alu -18 295 154 210 37 0 0 chr12 40241341 40241368 -103545087 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1879 94 73 0 chr12 40241368 40241488 -103544967 - AluSp SINE Alu -159 154 1 799 233 37 74 chr12 40241488 40241641 -103544814 - MIR SINE MIR -118 144 1 532 279 63 16 chr12 40241641 40241761 -103544694 - MIR SINE MIR -77 185 51 1626 181 17 0 chr12 40241891 40242182 -103544273 + AluJo SINE Alu 6 301 -11 2237 110 0 0 chr12 40242182 40242491 -103543964 + AluSc SINE Alu 1 309 0 952 199 5 0 chr12 40242765 40242951 -103543504 - AluJb SINE Alu 0 312 126 394 310 70 41 chr12 40242952 40243123 -103543332 + MIR SINE MIR 81 256 -6 342 45 0 0 chr12 40243616 40243660 -103542795 + (CAA)n Simple_repeat Simple_repeat 2 45 0 387 284 18 59 chr12 40243811 40243980 -103542475 + MER20B DNA MER1_type 18 179 -604 245 361 49 58 chr12 40244835 40245122 -103541333 + L2 LINE L2 2866 3149 -123 2301 93 0 3 chr12 40245122 40245435 -103541020 - AluSx SINE Alu 0 312 1 245 361 49 58 chr12 40245435 40245557 -103540898 + L2 LINE L2 3149 3271 -1 2220 317 87 17 chr12 40245650 40246691 -103539764 + L2 LINE L2 1751 2864 -450 446 221 0 23 chr12 40246856 40246942 -103539513 - AluS SINE Alu -229 84 1 1973 114 17 13 chr12 40246944 40247243 -103539212 - AluSg SINE Alu -10 300 1 803 135 0 38 chr12 40247277 40247410 -103539045 - FLAM_C SINE Alu -5 128 1 1072 166 0 5 chr12 40247538 40247725 -103538730 + AluJb SINE Alu 120 305 -7 574 281 172 20 chr12 40247772 40247976 -103538479 + L2 LINE L2 2966 3138 -175 2273 57 0 3 chr12 40247976 40248300 -103538155 - AluY SINE Alu 0 324 2 574 281 172 20 chr12 40248300 40248396 -103538059 + L2 LINE L2 3138 3313 0 1635 169 51 3 chr12 40248462 40248757 -103537698 - AluJb SINE Alu -3 309 1 2162 107 7 0 chr12 40248769 40249069 -103537386 - AluSc SINE Alu -7 302 1 300 207 126 18 chr12 40249587 40249698 -103536757 - L1MD2 LINE L1 -10 6349 6227 692 142 22 2 chr12 40250041 40250274 -103536181 + AluJo SINE Alu 1 278 -34 740 242 107 5 chr12 40250291 40250506 -103535949 + MIR SINE MIR 6 242 -20 2124 79 10 30 chr12 40250828 40251133 -103535322 - AluY SINE Alu -12 299 1 2154 102 7 0 chr12 40251133 40251428 -103535027 - AluSp SINE Alu -11 302 6 1023 68 0 8 chr12 40251532 40251665 -103534790 + AluY SINE Alu 1 132 -179 2158 117 0 0 chr12 40251725 40252025 -103534430 + AluSx SINE Alu 1 300 -12 2495 62 3 0 chr12 40252457 40252766 -103533689 + AluY SINE Alu 2 311 0 858 171 30 6 chr12 40252812 40252976 -103533479 - AluJb SINE Alu 0 312 145 8178 31 3 262 chr12 40252985 40254844 -103531611 - SVA Other Other 0 1386 9 1220 116 6 0 chr12 40254889 40255062 -103531393 - AluSp SINE Alu -23 290 117 2206 113 0 0 chr12 40255287 40255589 -103530866 + AluSx SINE Alu 1 302 -10 1064 128 0 0 chr12 40255603 40255751 -103530704 - AluSq/x SINE Alu -165 148 1 1655 171 90 35 chr12 40256316 40256556 -103529899 - MLT1B LTR MaLR -3 387 121 2032 127 3 3 chr12 40256556 40256864 -103529591 - AluJb SINE Alu -4 308 1 1655 171 90 35 chr12 40256864 40256967 -103529488 - MLT1B LTR MaLR -269 121 25 378 193 0 0 chr12 40256967 40257024 -103529431 + AluJ/FLAM SINE Alu 2 58 -244 2119 110 0 10 chr12 40257151 40257452 -103529003 - AluSg SINE Alu -12 298 1 1661 188 7 3 chr12 40257455 40257753 -103528702 - AluJo SINE Alu -13 299 1 243 125 0 25 chr12 40257759 40257799 -103528656 - MLT1B LTR MaLR -350 40 2 1999 133 0 19 chr12 40260111 40260281 -103526174 - AluSx SINE Alu -10 302 139 2223 96 6 6 chr12 40260281 40260594 -103525861 - AluSq SINE Alu 0 313 1 1999 133 0 19 chr12 40260594 40260731 -103525724 - AluSx SINE Alu -173 139 1 1649 177 11 0 chr12 40260743 40261059 -103525396 - AluJb SINE Alu 0 319 1 2215 99 7 0 chr12 40261066 40261370 -103525085 - AluSx SINE Alu -6 306 1 405 250 143 45 chr12 40261824 40262048 -103524407 - MIR SINE MIR -13 249 4 1509 156 0 16 chr12 40262780 40263037 -103523418 + AluJb SINE Alu 44 296 -16 2045 119 7 0 chr12 40269892 40270185 -103516270 + AluSx SINE Alu 1 295 -17 221 262 33 0 chr12 40271964 40272025 -103514430 - MIR3 SINE MIR -31 177 115 197 375 83 17 chr12 40274166 40274286 -103512169 + L3b LINE CR1 1268 1395 -188 1630 170 54 0 chr12 40274512 40274806 -103511649 - AluJo SINE Alu 0 312 3 1985 122 14 0 chr12 40274819 40275105 -103511350 - AluSx SINE Alu -14 298 9 215 265 15 0 chr12 40277089 40277157 -103509298 + G-rich Low_complexity Low_complexity 5 73 0 24 77 0 0 chr12 40277394 40277446 -103509009 + GC_rich Low_complexity Low_complexity 1 52 0 231 226 9 57 chr12 40277641 40277819 -103508636 + GA-rich Low_complexity Low_complexity 1 169 0 219 96 58 19 chr12 40280486 40280538 -103505917 + CT-rich Low_complexity Low_complexity 3 56 0 1709 101 47 0 chr12 40282552 40282832 -103503623 - AluSx SINE Alu 0 312 22 475 120 174 22 chr12 40282932 40283024 -103503431 + AluSg/x SINE Alu 186 291 -18 334 279 234 0 chr12 40283558 40283669 -103502786 - MER91A DNA MER1_type -59 137 1 204 291 181 29 chr12 40283698 40283908 -103502547 - L3b LINE CR1 -37 1546 1305 204 245 38 19 chr12 40284199 40284252 -103502203 + L2 LINE L2 3207 3260 -12 189 0 0 0 chr12 40284518 40284539 -103501916 + (CACAG)n Simple_repeat Simple_repeat 1 21 0 281 320 87 0 chr12 40285714 40285817 -103500638 + MIR SINE MIR 19 130 -78 22 35 0 0 chr12 40285819 40285848 -103500607 + AT_rich Low_complexity Low_complexity 1 29 0 642 125 67 0 chr12 40285848 40285952 -103500503 - HY1 scRNA scRNA -1 111 1 2199 110 0 3 chr12 40285956 40286266 -103500189 - AluSx SINE Alu -3 309 1 1734 94 38 19 chr12 40286288 40286555 -103499900 - AluSg SINE Alu 0 310 39 209 175 0 0 chr12 40286776 40286816 -103499639 + L3b LINE CR1 1540 1579 -4 1138 155 0 44 chr12 40287046 40287252 -103499203 - AluJb SINE Alu -115 197 1 2003 95 35 0 chr12 40287311 40287595 -103498860 - AluSq SINE Alu -19 294 1 459 247 42 83 chr12 40287613 40287811 -103498644 - MLT1F LTR MaLR -369 198 3 1386 123 5 0 chr12 40287863 40288075 -103498380 - AluSp SINE Alu -3 310 98 1988 130 20 3 chr12 40288098 40288391 -103498064 - AluSx SINE Alu -13 299 2 227 271 71 12 chr12 40288398 40288483 -103497972 - MIR SINE MIR -50 212 123 2180 69 10 3 chr12 40288586 40288874 -103497581 - AluY SINE Alu -21 290 1 2039 108 22 126 chr12 40288875 40289328 -103497127 - L1MC1 LINE L1 -25 6308 5903 2383 68 41 0 chr12 40289331 40289623 -103496832 - AluY SINE Alu -7 304 1 677 225 6 52 chr12 40289669 40289842 -103496613 + L2 LINE L2 3149 3313 0 2252 118 0 3 chr12 40289848 40290152 -103496303 + AluSx SINE Alu 1 303 -9 1131 147 0 0 chr12 40290778 40290935 -103495520 - FRAM SINE Alu -22 154 1 29 28 0 0 chr12 40291326 40291362 -103495093 + AT_rich Low_complexity Low_complexity 1 36 0 2183 127 3 0 chr12 40291362 40291653 -103494802 - AluSx SINE Alu -20 292 1 719 130 0 41 chr12 40291660 40291783 -103494672 - FLAM_C SINE Alu -2 141 24 2190 183 130 34 chr12 40291798 40292307 -103494148 - L1MC4 LINE L1 -12 8030 7449 2044 137 0 7 chr12 40292307 40292599 -103493856 + AluSx SINE Alu 1 290 -22 2190 183 130 34 chr12 40292599 40292713 -103493742 - L1MC4 LINE L1 -593 7449 7347 2255 115 3 0 chr12 40292718 40293013 -103493442 - AluSx SINE Alu -16 296 1 1225 154 70 98 chr12 40293176 40293287 -103493168 + AluJo SINE Alu 35 148 -164 2237 71 39 3 chr12 40293287 40293408 -103493047 + AluY SINE Alu 1 116 -195 522 0 0 0 chr12 40293408 40293466 -103492989 + (CA)n Simple_repeat Simple_repeat 2 59 0 2237 71 39 3 chr12 40293466 40293627 -103492828 + AluY SINE Alu 116 293 -18 2285 105 0 0 chr12 40293629 40293934 -103492521 + AluSq SINE Alu 1 305 -8 2490 78 0 0 chr12 40293944 40294250 -103492205 + AluSp SINE Alu 1 306 -7 1225 154 70 98 chr12 40294250 40294410 -103492045 + AluJo SINE Alu 158 312 0 230 216 27 27 chr12 40295356 40295430 -103491025 + (CCCTG)n Simple_repeat Simple_repeat 3 76 0 2205 125 0 0 chr12 40296244 40296541 -103489914 - AluSx SINE Alu -15 297 1 186 43 0 0 chr12 40296541 40296564 -103489891 + (T)n Simple_repeat Simple_repeat 1 23 0 861 137 12 7 chr12 40296613 40296775 -103489680 + L1MA8 LINE L1 5573 5733 -452 1054 165 6 17 chr12 40296778 40296975 -103489480 + FAM SINE Alu 1 60 0 2265 103 27 0 chr12 40296975 40297275 -103489180 + AluSg SINE Alu 1 308 -2 3298 118 17 47 chr12 40297282 40297491 -103488964 + L1MA8 LINE L1 5715 5929 -362 2277 107 7 0 chr12 40297491 40297780 -103488675 - AluSg SINE Alu -19 291 1 3298 118 17 47 chr12 40297780 40298163 -103488292 + L1MA8 LINE L1 5929 6289 -2 2348 91 3 3 chr12 40298216 40298524 -103487931 + AluSg SINE Alu 1 308 -2 1828 209 159 23 chr12 40298705 40299227 -103487228 + MLT1E LTR MaLR 1 593 0 275 317 30 20 chr12 40299227 40299328 -103487127 - MIR SINE MIR -70 192 91 253 292 62 35 chr12 40299332 40299476 -103486979 - LTR67 LTR ERVL -2 555 408 358 191 0 15 chr12 40300353 40300421 -103486034 + L2 LINE L2 3240 3306 -7 1384 277 60 18 chr12 40300481 40301081 -103485374 + L2 LINE L2 2520 3144 -169 2095 115 42 0 chr12 40301094 40301380 -103485075 - AluSg SINE Alu -12 298 1 1953 138 33 10 chr12 40301380 40301683 -103484772 - AluJo SINE Alu -1 311 1 951 122 38 0 chr12 40301708 40301839 -103484616 - AluJb SINE Alu -176 136 1 578 208 0 62 chr12 40301839 40301969 -103484486 + L2 LINE L2 3160 3281 -32 333 0 0 0 chr12 40302003 40302040 -103484415 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 186 43 0 0 chr12 40302200 40302223 -103484232 + (TGG)n Simple_repeat Simple_repeat 3 25 0 2060 113 3 0 chr12 40302284 40302592 -103483863 - AluSx SINE Alu 0 309 1 2509 53 13 7 chr12 40302652 40302955 -103483500 - AluSp SINE Alu -8 305 1 23 0 0 0 chr12 40303281 40303304 -103483151 + AT_rich Low_complexity Low_complexity 1 23 0 2070 127 20 0 chr12 40303400 40303692 -103482763 + AluSx SINE Alu 1 298 -14 1057 135 0 0 chr12 40303773 40303921 -103482534 + AluSg/x SINE Alu 147 294 -16 1532 130 0 5 chr12 40303929 40304145 -103482310 + AluSq SINE Alu 1 215 -98 2335 98 0 0 chr12 40304181 40304476 -103481979 - AluSg SINE Alu -15 295 1 2606 52 0 7 chr12 40304485 40304792 -103481663 - AluYb8 SINE Alu -13 305 1 2393 46 28 3 chr12 40304935 40305219 -103481236 - AluSc SINE Alu -18 291 1 203 196 0 43 chr12 40306304 40306350 -103480105 + G-rich Low_complexity Low_complexity 4 47 0 25 31 0 0 chr12 40309332 40309364 -103477091 + AT_rich Low_complexity Low_complexity 1 32 0 1676 100 5 0 chr12 40310045 40310265 -103476190 + AluSg SINE Alu 1 221 -89 2473 69 0 20 chr12 40311284 40311587 -103474868 + AluSp SINE Alu 1 297 -16 2208 105 10 0 chr12 40311595 40311891 -103474564 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr12 40311995 40312017 -103474438 + AT_rich Low_complexity Low_complexity 1 22 0 1862 152 20 17 chr12 40312104 40312406 -103474049 + AluJb SINE Alu 1 303 -9 1007 155 108 57 chr12 40312488 40312551 -103473904 - L1MD1 LINE L1 -8 6234 6176 818 83 108 17 chr12 40312551 40312671 -103473784 + FLAM_C SINE Alu 3 133 0 1007 155 108 57 chr12 40312671 40312903 -103473552 - L1MD1 LINE L1 -66 6176 5924 2630 77 0 0 chr12 40312905 40313216 -103473239 + AluSx SINE Alu 1 311 -1 2646 51 0 13 chr12 40313216 40313528 -103472927 + AluY SINE Alu 1 309 -2 1582 165 93 4 chr12 40313573 40313852 -103472603 + AluJo SINE Alu 1 304 -8 1303 158 24 0 chr12 40313945 40314109 -103472346 - AluJb SINE Alu -14 298 126 2187 94 17 14 chr12 40314109 40314406 -103472049 - AluSx SINE Alu -12 300 3 1303 158 24 0 chr12 40314406 40314450 -103472005 - AluJb SINE Alu -186 126 85 257 228 202 70 chr12 40314502 40314616 -103471839 - MIR SINE MIR -111 151 23 2101 130 0 0 chr12 40314754 40315054 -103471401 + AluSx SINE Alu 9 308 -4 2127 128 3 16 chr12 40315095 40315399 -103471056 + AluJo SINE Alu 1 300 -12 1972 120 40 0 chr12 40315480 40315756 -103470699 + AluSx SINE Alu 5 291 -21 2089 107 61 0 chr12 40315886 40316166 -103470289 - AluSg SINE Alu -13 297 1 224 307 146 36 chr12 40316728 40316920 -103469535 - L2 LINE L2 -234 3038 2826 558 322 94 28 chr12 40317021 40317384 -103469071 + LTR67 LTR ERVL 113 499 -58 919 195 12 0 chr12 40317387 40317551 -103468904 - FRAM SINE Alu 0 166 1 2245 119 0 0 chr12 40317566 40317861 -103468594 - AluSx SINE Alu -17 295 1 34 19 0 19 chr12 40317863 40317898 -103468557 + AT_rich Low_complexity Low_complexity 1 36 -15 2287 120 0 0 chr12 40317898 40318207 -103468248 - AluSg SINE Alu -1 309 1 34 19 0 19 chr12 40318207 40318223 -103468232 + AT_rich Low_complexity Low_complexity 36 51 0 24 0 0 0 chr12 40318295 40318319 -103468136 + AT_rich Low_complexity Low_complexity 1 24 0 2198 128 3 0 chr12 40318497 40318809 -103467646 + AluSq SINE Alu 1 313 0 2540 67 0 19 chr12 40319390 40319705 -103466750 + AluY SINE Alu 1 309 -2 1055 157 0 4 chr12 40320617 40320821 -103465634 + AluJb SINE Alu 2 295 -17 2549 55 0 0 chr12 40320823 40321114 -103465341 + AluY SINE Alu 1 291 -20 800 164 0 0 chr12 40321121 40321237 -103465218 + FLAM_C SINE Alu 1 116 -17 1413 143 13 31 chr12 40321237 40321454 -103465001 - AluJo SINE Alu -97 215 1 2420 87 7 3 chr12 40321570 40321880 -103464575 + AluSx SINE Alu 1 311 -1 2346 94 10 3 chr12 40322601 40322910 -103463545 + AluSq SINE Alu 1 311 -2 204 289 92 13 chr12 40323397 40323473 -103462982 - MIR SINE MIR -8 254 173 2306 122 0 0 chr12 40323477 40323788 -103462667 - AluSx SINE Alu -1 311 1 288 169 48 96 chr12 40323806 40323889 -103462566 - MIR SINE MIR -69 193 115 1851 157 39 0 chr12 40323955 40324241 -103462214 - AluJb SINE Alu -15 297 1 498 224 6 99 chr12 40325109 40325195 -103461260 - L2 LINE L2 -1349 1965 1873 180 0 0 0 chr12 40325195 40325215 -103461240 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1753 187 0 3 chr12 40325220 40325503 -103460952 - AluJo SINE Alu -30 282 1 498 224 6 99 chr12 40325503 40325571 -103460884 - L2 LINE L2 -1445 1869 1820 384 202 101 0 chr12 40325699 40325798 -103460657 + MER63 DNA MER1_type 953 1061 0 2058 101 49 0 chr12 40325890 40326176 -103460279 + AluSx SINE Alu 5 304 -8 367 353 82 5 chr12 40326177 40326361 -103460094 - MIR SINE MIR -18 244 47 1912 158 14 3 chr12 40326915 40327207 -103459248 + AluJo SINE Alu 1 295 -17 250 269 0 45 chr12 40327257 40327324 -103459131 - L2 LINE L2 -6 3266 3203 2744 42 0 0 chr12 40327572 40327880 -103458575 + AluY SINE Alu 1 308 -3 217 316 132 20 chr12 40327961 40328113 -103458342 - L2 LINE L2 -448 2866 2698 * 258 185 31 62 chr12 40328111 40328176 -103458279 + L2 LINE L2 3251 3313 0 2357 90 0 13 chr12 40328266 40328399 -103458056 + AluSc SINE Alu 2 135 -174 2486 91 0 0 chr12 40328399 40328706 -103457749 + AluSg SINE Alu 1 307 -3 2357 90 0 13 chr12 40328706 40328873 -103457582 + AluSc SINE Alu 135 298 -11 696 250 88 54 chr12 40329662 40329801 -103456654 - MIR SINE MIR -1 261 109 2322 97 0 26 chr12 40329801 40330109 -103456346 + AluSq SINE Alu 1 300 -13 696 250 88 54 chr12 40330109 40330209 -103456246 - MIR SINE MIR -153 109 14 2391 78 3 0 chr12 40330356 40330652 -103455803 + AluY SINE Alu 1 297 -14 2127 135 7 0 chr12 40331012 40331315 -103455140 + AluSx SINE Alu 1 305 -7 2497 80 0 0 chr12 40331633 40331932 -103454523 + AluSq SINE Alu 1 299 -14 1054 97 0 102 chr12 40332005 40332181 -103454274 + AluSp SINE Alu 137 294 -19 2232 113 3 0 chr12 40332218 40332520 -103453935 - AluSx SINE Alu -9 303 1 886 267 15 0 chr12 40332557 40332763 -103453692 + Tigger7 DNA MER2_type 2 210 -2277 397 202 0 83 chr12 40332782 40332891 -103453564 + Tigger7 DNA MER2_type 2388 2487 0 2183 107 7 13 chr12 40332907 40333217 -103453238 - AluSx SINE Alu -4 308 1 314 182 142 61 chr12 40333226 40333251 -103453204 - HAL1 LINE L1 -186 2321 2299 1608 172 23 43 chr12 40333251 40333554 -103452901 - AluJo SINE Alu -15 297 1 314 182 142 61 chr12 40333554 40333676 -103452779 - HAL1 LINE L1 -208 2299 2162 332 197 108 22 chr12 40333676 40333863 -103452592 + MLT1E2 LTR MaLR 4 190 -436 2439 65 3 13 chr12 40333863 40334170 -103452285 + AluY SINE Alu 1 304 -7 1716 149 41 86 chr12 40334182 40334469 -103451986 + MLT1E2 LTR MaLR 279 577 -49 1945 124 81 0 chr12 40334469 40334752 -103451703 + AluSq SINE Alu 1 306 -7 2045 127 47 7 chr12 40334759 40335059 -103451396 + AluSx SINE Alu 1 312 0 1716 149 41 86 chr12 40335059 40335125 -103451330 + MLT1E2 LTR MaLR 583 624 -2 1508 224 134 83 chr12 40335130 40335275 -103451180 - HAL1 LINE L1 -341 2166 2030 1945 134 0 33 chr12 40335275 40335582 -103450873 + AluJb SINE Alu 11 307 -5 1508 224 134 83 chr12 40335582 40336097 -103450358 - HAL1 LINE L1 -477 2030 1543 1984 152 0 3 chr12 40336097 40336394 -103450061 - AluJo SINE Alu -16 296 1 1508 224 134 83 chr12 40336394 40336541 -103449914 - HAL1 LINE L1 -964 1543 1405 2193 114 3 13 chr12 40336541 40336857 -103449598 - AluSq SINE Alu 0 313 1 1508 224 134 83 chr12 40336857 40336978 -103449477 - HAL1 LINE L1 -1102 1405 1292 1939 149 0 7 chr12 40336978 40337267 -103449188 - AluJo SINE Alu -25 287 1 1508 224 134 83 chr12 40337267 40337340 -103449115 - HAL1 LINE L1 -1215 1292 1110 1220 238 96 22 chr12 40337341 40337665 -103448790 - MLT1F1 LTR MaLR 0 567 220 1388 81 0 16 chr12 40337665 40337851 -103448604 - AluY SINE Alu 0 311 129 925 189 80 5 chr12 40337851 40338052 -103448403 - MLT1F1 LTR MaLR -351 216 1 502 282 130 32 chr12 40338111 40338458 -103447997 - HAL1 LINE L1 -1410 1097 717 2040 148 125 31 chr12 40338610 40339001 -103447454 - MSTA LTR MaLR 0 428 1 180 0 0 0 chr12 40339221 40339241 -103447214 + (ATG)n Simple_repeat Simple_repeat 1 20 0 682 229 93 26 chr12 40339322 40339632 -103446823 - L1MC4 LINE L1 -14 8028 7698 984 200 0 0 chr12 40339634 40339799 -103446656 - FRAM SINE Alu -1 165 1 1389 159 0 0 chr12 40339832 40340046 -103446409 + AluSg/x SINE Alu 86 299 -13 254 118 0 0 chr12 40340046 40340080 -103446375 - AluJo/FLAM SINE Alu -186 116 83 1679 200 71 27 chr12 40340082 40340212 -103446243 - L1MC4 LINE L1 -207 7601 7478 1947 114 82 0 chr12 40340212 40340493 -103445962 - AluSp SINE Alu -9 304 1 1679 200 71 27 chr12 40340493 40340787 -103445668 - L1MC4 LINE L1 -330 7478 7198 1873 152 24 7 chr12 40340787 40341084 -103445371 - AluJb SINE Alu -10 302 1 1679 200 71 27 chr12 40341084 40341105 -103445350 - L1MC4 LINE L1 -610 7198 7179 675 75 28 0 chr12 40341105 40341212 -103445243 + (TA)n Simple_repeat Simple_repeat 1 110 0 1679 200 71 27 chr12 40341212 40341246 -103445209 - L1MC4 LINE L1 -629 7179 7126 1842 221 60 17 chr12 40341275 40341754 -103444701 - L1MCb LINE L1 -5159 886 387 1220 219 53 50 chr12 40341750 40342111 -103444344 - L1MCb LINE L1 -6042 522 161 * 1408 170 30 75 chr12 40342118 40342360 -103444095 - MER63 DNA MER1_type -228 833 609 2047 139 3 0 chr12 40342360 40342655 -103443800 + AluSx SINE Alu 1 296 -16 1408 170 30 75 chr12 40342655 40342747 -103443708 - MER63 DNA MER1_type -452 609 514 764 192 0 0 chr12 40342747 40342872 -103443583 + FLAM_A SINE Alu 4 128 -5 253 179 0 0 chr12 40342873 40342912 -103443543 + MER4D LTR ERV1 760 798 -74 29 0 0 0 chr12 40342912 40342941 -103443514 + AT_rich Low_complexity Low_complexity 1 29 0 2208 110 10 0 chr12 40342950 40343249 -103443206 + AluSp SINE Alu 1 302 -11 2051 114 74 40 chr12 40343585 40343937 -103442518 + THE1B LTR MaLR 1 364 0 11625 86 21 3 chr12 40343937 40345489 -103440966 + THE1B-int LTR MaLR 1 1580 0 2497 101 5 37 chr12 40345489 40345865 -103440590 + THE1B LTR MaLR 1 364 0 185 316 95 21 chr12 40345981 40346076 -103440379 + MIR SINE MIR 53 154 -108 327 253 163 24 chr12 40346538 40346704 -103439751 - MIR SINE MIR -16 246 58 2511 73 0 0 chr12 40346709 40347011 -103439444 - AluSx SINE Alu -9 303 2 231 250 87 0 chr12 40347140 40347232 -103439223 + MIR SINE MIR 160 259 -3 270 250 0 0 chr12 40347312 40347376 -103439079 - L1ME LINE L1 -590 5574 5511 2371 55 7 26 chr12 40347468 40347776 -103438679 - AluSg SINE Alu -8 302 1 2347 78 0 13 chr12 40349158 40349467 -103436988 + AluSq SINE Alu 1 305 -8 1841 141 0 0 chr12 40349808 40350078 -103436377 + AluSx SINE Alu 1 270 -42 240 278 0 83 chr12 40350152 40350260 -103436195 - L2 LINE L2 -1 3271 3173 1636 166 6 64 chr12 40350713 40351027 -103435428 + AluJb SINE Alu 1 296 -16 1364 211 14 11 chr12 40351138 40351417 -103435038 - AluJo SINE Alu -31 281 2 9362 186 11 28 chr12 40351822 40353238 -103433217 - L1PA13 LINE L1 -145 7456 6016 2356 107 0 0 chr12 40353238 40353537 -103432918 - AluSx SINE Alu -11 301 3 9362 186 11 28 chr12 40353537 40356109 -103430346 - L1PA13 LINE L1 -1585 6016 2234 2667 32 0 19 chr12 40356127 40356440 -103430015 - AluY SINE Alu -4 307 1 234 325 0 0 chr12 40356715 40356798 -103429657 - L1PA13 LINE L1 -5399 2182 2100 1040 343 55 18 chr12 40356944 40357507 -103428948 - L1PA13 LINE L1 -6203 1371 788 320 211 70 32 chr12 40357536 40357721 -103428734 - L1M4 LINE L1 -2978 3168 2977 1813 219 27 75 chr12 40358016 40358566 -103427889 - LTR8 LTR ERV1 -31 660 138 305 116 23 0 chr12 40358566 40358609 -103427846 + AluJb SINE Alu 1 44 -257 2237 106 10 0 chr12 40358678 40358971 -103427484 - AluSx SINE Alu -16 296 1 1464 177 0 4 chr12 40359090 40359327 -103427128 + AluJb SINE Alu 47 282 -30 656 156 57 16 chr12 40359414 40359536 -103426919 - LTR8 LTR ERV1 -564 127 1 353 232 72 0 chr12 40359750 40359875 -103426580 - L1M4 LINE L1 -3456 2690 2557 1408 178 29 16 chr12 40359884 40360198 -103426257 - L1M4 LINE L1 -3034 3112 2795 713 258 26 73 chr12 40360471 40360801 -103425654 - LTR16A LTR ERVL 0 450 56 2137 140 19 35 chr12 40360990 40361180 -103425275 + MER65A LTR ERV1 80 263 -182 1954 141 3 10 chr12 40361180 40361479 -103424976 - AluSx SINE Alu -15 297 1 2137 140 19 35 chr12 40361479 40361660 -103424795 + MER65A LTR ERV1 263 445 0 2470 64 0 3 chr12 40361881 40362176 -103424279 + AluY SINE Alu 1 294 -17 2240 123 0 7 chr12 40362190 40362492 -103423963 + AluSx SINE Alu 1 300 -12 428 333 26 0 chr12 40362697 40362853 -103423602 - ERVL LTR ERVL -859 4905 4746 1363 271 18 12 chr12 40362953 40363282 -103423173 - LTR16A LTR ERVL 0 450 120 1622 189 31 14 chr12 40363334 40363620 -103422835 - AluJo SINE Alu -19 293 3 316 330 0 9 chr12 40363722 40363834 -103422621 - L1MEd LINE L1 -5552 567 457 485 360 43 5 chr12 40363934 40364328 -103422127 + L1M4 LINE L1 4182 4590 -1556 21 0 0 0 chr12 40364384 40364405 -103422050 + AT_rich Low_complexity Low_complexity 1 21 0 298 216 112 43 chr12 40364423 40364539 -103421916 + L1MC4 LINE L1 7901 8024 -18 1923 119 59 0 chr12 40364543 40364829 -103421626 - AluSx SINE Alu -9 303 1 16557 26 1 1 chr12 40365122 40367805 -103418650 - L1PA3 LINE L1 -3 6152 3470 10672 31 1 2 chr12 40367805 40369093 -103417362 + L1PA3 LINE L1 2191 3477 -2669 652 133 0 0 chr12 40369102 40369207 -103417248 - L1MA1 LINE L1 0 6302 6198 37 69 0 0 chr12 40369351 40369423 -103417032 + AT_rich Low_complexity Low_complexity 1 72 0 1744 143 38 4 chr12 40369952 40370217 -103416238 - AluJo SINE Alu -30 282 9 2115 151 0 0 chr12 40370413 40370724 -103415731 - AluSx SINE Alu -1 311 1 31 58 0 0 chr12 40370729 40370781 -103415674 + AT_rich Low_complexity Low_complexity 1 52 0 2148 115 7 20 chr12 40371918 40372223 -103414232 + AluSx SINE Alu 7 307 -5 2082 125 20 13 chr12 40372604 40372909 -103413546 - AluJb SINE Alu -5 307 1 183 100 0 0 chr12 40373862 40373892 -103412563 + (TATG)n Simple_repeat Simple_repeat 2 31 0 2282 98 3 7 chr12 40373892 40374178 -103412277 - AluSq SINE Alu -26 287 1 1970 144 50 0 chr12 40376155 40376453 -103410002 + AluSq SINE Alu 1 313 0 542 275 6 12 chr12 40377012 40377179 -103409276 + MIR3 SINE MIR 37 202 -6 1892 111 70 0 chr12 40377740 40378010 -103408445 - AluSq SINE Alu -24 289 1 687 131 33 0 chr12 40378186 40378308 -103408147 - L1MA9 LINE L1 -28 6284 6159 2295 107 0 0 chr12 40378727 40379025 -103407430 - AluSx SINE Alu -14 298 1 2219 114 7 3 chr12 40379027 40379326 -103407129 - AluSq SINE Alu -13 300 1 197 318 30 0 chr12 40379387 40379453 -103407002 - L2 LINE L2 -5 3267 3200 1014 191 0 0 chr12 40379639 40379812 -103406643 - FAM SINE Alu -2 173 1 2122 96 65 7 chr12 40379869 40380161 -103406294 - AluSc SINE Alu 0 309 1 253 223 50 6 chr12 40381688 40381779 -103404676 - MIR SINE MIR -61 147 99 203 59 0 29 chr12 40381809 40381843 -103404612 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2052 141 7 0 chr12 40382494 40382791 -103403664 - AluSx SINE Alu -13 299 1 232 232 0 110 chr12 40382811 40382893 -103403562 - MIR SINE MIR -119 89 17 1242 169 99 29 chr12 40384314 40384586 -103401869 - AluJb SINE Alu -9 303 13 4349 124 3 17 chr12 40386482 40387135 -103399320 + LTR9B LTR ERV1 1 644 0 2450 209 17 35 chr12 40387135 40387653 -103398802 + HUERS-P3b LTR ERV1 1 509 -6909 10814 119 18 14 chr12 40387696 40389278 -103397177 + HUERS-P3b LTR ERV1 764 2351 -5067 1349 133 67 0 chr12 40389278 40389488 -103396967 + L1P LINE L1 2 225 -5921 418 216 57 0 chr12 40389598 40389686 -103396769 - MER33 DNA MER1_type -230 94 2 2320 86 0 0 chr12 40389866 40390157 -103396298 + AluSx SINE Alu 1 291 -21 2525 77 6 0 chr12 40390157 40390468 -103395987 + AluSp SINE Alu 1 313 0 1389 94 0 0 chr12 40390665 40390845 -103395610 + AluSg/x SINE Alu 129 312 0 2539 71 0 0 chr12 40391715 40392025 -103394430 - AluY SINE Alu -1 310 1 2441 64 7 0 chr12 40393092 40393387 -103393068 - AluSp SINE Alu -16 297 1 313 296 154 19 chr12 40393492 40393654 -103392801 + MER5A DNA MER1_type 2 185 -4 372 292 117 0 chr12 40393705 40393825 -103392630 + L2 LINE L2 3180 3313 0 21 0 0 0 chr12 40393927 40393948 -103392507 + AT_rich Low_complexity Low_complexity 1 21 0 237 65 0 0 chr12 40394177 40394208 -103392247 + (TA)n Simple_repeat Simple_repeat 1 31 0 2213 91 3 20 chr12 40394209 40394505 -103391950 - AluY SINE Alu 0 311 21 216 0 0 0 chr12 40394505 40394529 -103391926 + (TA)n Simple_repeat Simple_repeat 2 25 0 1918 116 11 7 chr12 40394529 40394806 -103391649 - AluSg SINE Alu -18 292 15 1669 193 0 17 chr12 40394842 40395132 -103391323 - AluJo SINE Alu -22 290 6 1782 245 35 18 chr12 40395148 40395460 -103390995 + L1M4 LINE L1 2877 3182 -2964 1664 159 35 4 chr12 40395460 40395717 -103390738 - AluJb SINE Alu -27 285 21 1782 245 35 18 chr12 40395717 40396012 -103390443 + L1M4 LINE L1 3182 3494 -2652 1340 260 28 23 chr12 40396011 40396400 -103390055 + L1PA12 LINE L1 654 1044 -6537 * 2111 131 0 0 chr12 40396401 40396698 -103389757 - AluSg SINE Alu -13 297 1 2076 104 3 17 chr12 40396717 40397016 -103389439 - AluSg SINE Alu -15 295 1 870 133 0 16 chr12 40397169 40397297 -103389158 - FLAM_C SINE Alu -6 127 2 732 305 63 43 chr12 40397581 40397606 -103388849 - L1ME4a LINE L1 -3 6118 6095 2179 112 10 13 chr12 40397606 40397910 -103388545 + AluSx SINE Alu 1 303 -9 732 305 63 43 chr12 40397910 40398507 -103387948 - L1ME4a LINE L1 -26 6095 5484 296 127 91 0 chr12 40398532 40398587 -103387868 - AluS SINE Alu -8 292 233 1241 159 128 35 chr12 40398717 40398974 -103387481 - AluJo SINE Alu -31 281 1 254 272 12 0 chr12 40399078 40399159 -103387296 - L1ME4a LINE L1 -107 6014 5933 2341 99 0 0 chr12 40399231 40399533 -103386922 - AluSx SINE Alu -10 302 1 31 44 0 0 chr12 40399543 40399588 -103386867 + AT_rich Low_complexity Low_complexity 1 45 0 574 167 12 0 chr12 40399589 40399673 -103386782 - FLAM_C SINE Alu -26 117 33 1735 112 52 75 chr12 40399716 40400021 -103386434 - AluSx SINE Alu -14 298 1 27 0 0 0 chr12 40400100 40400127 -103386328 + AT_rich Low_complexity Low_complexity 1 27 0 1604 168 40 16 chr12 40400218 40400522 -103385933 + AluJo SINE Alu 1 311 -1 795 139 8 33 chr12 40400752 40400874 -103385581 - FLAM_C SINE Alu -23 120 2 21 36 0 0 chr12 40400875 40400903 -103385552 + AT_rich Low_complexity Low_complexity 1 28 0 1349 167 30 0 chr12 40401337 40401570 -103384885 - L1MB7 LINE L1 -19 6165 5926 841 156 0 57 chr12 40402222 40402363 -103384092 + AluJo/FLAM SINE Alu 1 133 -169 1459 181 50 11 chr12 40402366 40402493 -103383962 + AluJb SINE Alu 1 122 -190 207 0 0 0 chr12 40402493 40402516 -103383939 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1459 181 50 11 chr12 40402516 40402669 -103383786 + AluJb SINE Alu 122 292 -20 3282 118 2 45 chr12 40402767 40402980 -103383475 - MER1A DNA MER1_type -2173 529 308 2287 90 0 3 chr12 40402980 40403269 -103383186 - AluSc SINE Alu -21 288 1 3282 118 2 45 chr12 40403269 40403570 -103382885 - MER1A DNA MER1_type -2394 308 37 1895 124 38 3 chr12 40403854 40404144 -103382311 - AluJb SINE Alu -12 300 1 2219 107 3 10 chr12 40404198 40404506 -103381949 - AluSp SINE Alu -7 306 1 389 167 0 0 chr12 40404509 40404569 -103381886 - Alu SINE Alu -8 293 234 800 65 0 0 chr12 40404571 40404664 -103381791 - AluSc SINE Alu -215 94 2 769 55 0 0 chr12 40404666 40404757 -103381698 - MER1A DNA MER1_type -196 333 243 1039 212 5 10 chr12 40404757 40404960 -103381495 - AluJb SINE Alu -110 202 1 1443 97 11 126 chr12 40404963 40405232 -103381223 - AluSg1 SINE Alu -12 297 60 243 0 0 0 chr12 40405919 40405946 -103380509 + (T)n Simple_repeat Simple_repeat 1 27 0 2208 113 3 3 chr12 40407061 40407386 -103379069 + AluSx SINE Alu 1 312 0 215 204 0 0 chr12 40409782 40409826 -103376629 + (TG)n Simple_repeat Simple_repeat 2 45 0 2337 93 0 7 chr12 40413771 40414072 -103372383 - AluSx SINE Alu -13 299 1 1441 168 29 15 chr12 40414878 40415152 -103371303 + AluJo SINE Alu 29 306 -6 2343 228 149 84 chr12 40415152 40415269 -103371186 - L2 LINE L2 -35 3278 3170 1511 157 61 14 chr12 40415269 40415549 -103370906 - AluJo SINE Alu -19 293 1 2343 228 149 84 chr12 40415549 40416149 -103370306 - L2 LINE L2 -143 3170 2610 2342 97 3 0 chr12 40416149 40416447 -103370008 - AluSq SINE Alu -14 299 1 2343 228 149 84 chr12 40416447 40416997 -103369458 - L2 LINE L2 -703 2610 1893 2157 112 14 0 chr12 40416997 40417293 -103369162 - AluSx SINE Alu -12 300 1 359 72 10 3 chr12 40417422 40417484 -103368971 + Alu SINE Alu 247 295 -5 2106 99 0 38 chr12 40417573 40417887 -103368568 + AluSg SINE Alu 1 302 -8 337 144 367 0 chr12 40418248 40418338 -103368117 + L2 LINE L2 3191 3313 0 25 0 0 0 chr12 40418393 40418418 -103368037 + AT_rich Low_complexity Low_complexity 1 25 0 369 0 0 0 chr12 40418431 40418472 -103367983 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 729 191 0 0 chr12 40418472 40418587 -103367868 - AluJb SINE Alu -196 116 2 221 282 28 14 chr12 40418887 40418958 -103367497 - MIR SINE MIR -116 92 21 437 243 184 38 chr12 40418984 40419169 -103367286 + MIR SINE MIR 41 252 -10 2475 68 3 0 chr12 40419275 40419583 -103366872 - AluSp SINE Alu -4 309 1 218 259 37 0 chr12 40420971 40421025 -103365430 + MIR SINE MIR 92 147 -61 968 96 0 22 chr12 40421049 40421185 -103365270 - FLAM_C SINE Alu 0 133 1 1631 107 29 36 chr12 40421217 40421498 -103364957 - AluSx SINE Alu -33 279 1 841 158 0 0 chr12 40421700 40421833 -103364622 + AluJo/FLAM SINE Alu 1 133 -179 1466 184 26 15 chr12 40421836 40422108 -103364347 + AluJo SINE Alu 2 276 -36 349 189 14 7 chr12 40422108 40422177 -103364278 - AluJ/FLAM SINE Alu -240 62 1 22 23 0 45 chr12 40423563 40423589 -103362866 + AT_rich Low_complexity Low_complexity 1 26 -16 775 112 60 8 chr12 40423589 40423723 -103362732 - L1MA6 LINE L1 -2 6298 6158 22 23 0 45 chr12 40423723 40423740 -103362715 + AT_rich Low_complexity Low_complexity 26 42 0 418 159 0 0 chr12 40424139 40424202 -103362253 - 5S rRNA rRNA -55 66 4 2347 93 0 16 chr12 40424381 40424692 -103361763 - AluSg SINE Alu -4 306 1 21 0 0 0 chr12 40425068 40425089 -103361366 + AT_rich Low_complexity Low_complexity 1 21 0 1737 149 25 51 chr12 40425485 40425522 -103360933 + AluJo SINE Alu 1 37 -275 2186 100 10 0 chr12 40425522 40425811 -103360644 - AluSq SINE Alu -19 294 3 1737 149 25 51 chr12 40425811 40426088 -103360367 + AluJo SINE Alu 37 307 -5 24 32 0 0 chr12 40426598 40426629 -103359826 + AT_rich Low_complexity Low_complexity 1 31 0 1936 120 7 37 chr12 40426778 40427078 -103359377 - AluSx SINE Alu -21 291 1 282 93 13 40 chr12 40427154 40427229 -103359226 + (TTTTA)n Simple_repeat Simple_repeat 3 75 0 1880 118 0 7 chr12 40427235 40427505 -103358950 - AluSx SINE Alu -1 311 44 1399 254 88 55 chr12 40427716 40427951 -103358504 + L1ME3A LINE L1 4802 5028 -1142 1678 201 0 0 chr12 40427951 40428250 -103358205 + AluJb SINE Alu 1 299 -13 1399 254 88 55 chr12 40428250 40428270 -103358185 + L1ME3A LINE L1 5028 5046 -1124 1926 115 0 0 chr12 40428270 40428530 -103357925 + AluSg SINE Alu 37 296 -14 2023 134 3 3 chr12 40428532 40428822 -103357633 + AluSg SINE Alu 1 290 -20 1399 254 88 55 chr12 40428822 40429702 -103356753 + L1ME3A LINE L1 5046 5963 -207 6200 216 93 91 chr12 40429826 40432523 -103353932 + LTR10B-int LTR ERV1 1 2707 -3963 10083 221 7 11 chr12 40432535 40434527 -103351928 + LTR10B-int LTR ERV1 4666 6648 -1 2072 213 23 21 chr12 40434528 40434986 -103351469 + LTR10B LTR ERV1 1 547 0 2472 137 10 59 chr12 40435871 40436092 -103350363 - L1PA12 LINE L1 -9 6155 5925 541 105 53 11 chr12 40436092 40436187 -103350268 - L1PA13 LINE L1 0 6163 6065 2472 137 10 59 chr12 40436187 40436289 -103350166 - L1PA12 LINE L1 -239 5925 5820 3397 77 0 58 chr12 40436289 40436758 -103349697 + MLT2A1 LTR ERVL 1 442 -2 2472 137 10 59 chr12 40436758 40436978 -103349477 - L1PA12 LINE L1 -344 5820 5662 1352 139 5 0 chr12 40436978 40437180 -103349275 + AluSx SINE Alu 1 203 -109 511 92 0 0 chr12 40437180 40437245 -103349210 + AluSg/x SINE Alu 67 131 -179 1370 175 0 0 chr12 40437248 40437459 -103348996 - AluJb SINE Alu -101 211 1 226 263 0 0 chr12 40437864 40437921 -103348534 + L1ME LINE L1 5511 5567 -599 251 241 96 0 chr12 40438014 40438097 -103348358 - MIR SINE MIR -12 250 160 1276 113 25 117 chr12 40438208 40438491 -103347964 - L1MCa LINE L1 -5303 1123 867 2063 97 3 30 chr12 40438492 40438792 -103347663 - AluY SINE Alu -18 293 2 12189 185 18 49 chr12 40438793 40439080 -103347375 + L1P4 LINE L1 678 972 -5174 215 61 30 0 chr12 40439080 40439113 -103347342 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 12189 185 18 49 chr12 40439113 40439434 -103347021 + L1P4 LINE L1 972 1301 -4845 1715 164 10 7 chr12 40439434 40439727 -103346728 + AluSg SINE Alu 1 294 -16 12189 185 18 49 chr12 40439727 40441912 -103344543 + L1P4 LINE L1 1301 3387 -2759 2038 129 3 0 chr12 40441923 40442218 -103344237 + AluSq SINE Alu 12 307 -6 1374 138 0 0 chr12 40442252 40442448 -103344007 + AluJb SINE Alu 90 285 -27 223 37 0 0 chr12 40442448 40442475 -103343980 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 11929 135 17 23 chr12 40442480 40444404 -103342051 + L1P4 LINE L1 3380 5275 -899 185 0 40 0 chr12 40444404 40444429 -103342026 + (CAA)n Simple_repeat Simple_repeat 2 27 0 11929 135 17 23 chr12 40444429 40444893 -103341562 + L1P4 LINE L1 5275 5740 -434 2841 114 35 7 chr12 40445067 40445523 -103340932 + L1PA11 LINE L1 5703 6171 -3 1311 259 57 6 chr12 40445541 40446013 -103340442 + L1M4 LINE L1 3475 3970 -2176 * 1677 216 70 24 chr12 40446012 40446281 -103340174 + L1M4 LINE L1 4200 4455 -1691 1966 126 14 0 chr12 40446281 40446575 -103339880 + L1PA16 LINE L1 5867 6164 -2 1677 216 70 24 chr12 40446575 40446837 -103339618 + L1M4 LINE L1 4455 4755 -1391 2436 124 89 2 chr12 40446837 40447231 -103339224 + MSTA LTR MaLR 1 428 0 9821 157 30 7 chr12 40447231 40448844 -103337611 + MSTA-int LTR MaLR 1 1651 0 856 100 46 8 chr12 40448846 40448976 -103337479 + MSTA LTR MaLR 3 137 -291 2132 110 10 3 chr12 40449232 40449523 -103336932 + AluSx SINE Alu 1 293 -19 1737 159 24 17 chr12 40449566 40449856 -103336599 + AluJb SINE Alu 2 293 -19 549 110 0 0 chr12 40449856 40449938 -103336517 + (TA)n Simple_repeat Simple_repeat 2 83 0 4791 118 142 35 chr12 40450549 40450987 -103335468 - Tigger3b DNA MER2_type -1797 1231 841 2129 122 0 28 chr12 40450987 40451308 -103335147 - AluSx SINE Alu 0 312 1 1716 158 21 24 chr12 40451315 40451606 -103334849 - AluJo SINE Alu -22 290 1 4791 118 142 35 chr12 40451606 40452075 -103334380 - Tigger3b DNA MER2_type -2192 836 202 2261 98 3 7 chr12 40452075 40452372 -103334083 - AluSc SINE Alu -13 296 1 4791 118 142 35 chr12 40452372 40452432 -103334023 - Tigger3b DNA MER2_type -2826 202 150 285 128 0 0 chr12 40452881 40452928 -103333527 + Alu SINE Alu 249 295 -6 432 244 0 0 chr12 40452932 40453018 -103333437 - Tigger3b DNA MER2_type -1144 87 2 1948 108 26 39 chr12 40453382 40453687 -103332768 - AluSg SINE Alu -6 304 4 1663 101 5 0 chr12 40453743 40453960 -103332495 - AluSp SINE Alu -23 290 73 413 244 85 18 chr12 40454007 40454171 -103332284 + MIR3 SINE MIR 19 193 -15 1954 103 45 58 chr12 40455241 40455551 -103330904 - AluSx SINE Alu -6 306 1 1394 169 9 115 chr12 40455555 40455751 -103330704 - AluJo SINE Alu 0 302 155 2284 104 0 0 chr12 40455751 40456039 -103330416 - AluSx SINE Alu -24 288 1 1394 169 9 115 chr12 40456039 40456180 -103330275 - AluJo SINE Alu -147 155 1 1826 163 10 10 chr12 40456218 40456519 -103329936 - AluJb SINE Alu -11 301 1 2132 126 0 3 chr12 40456865 40457167 -103329288 - AluSg SINE Alu -9 301 1 23 33 0 0 chr12 40457244 40457274 -103329181 + AT_rich Low_complexity Low_complexity 1 30 0 921 194 81 28 chr12 40457359 40457570 -103328885 + AluJo SINE Alu 86 307 -5 2297 99 0 10 chr12 40457571 40457873 -103328582 + AluSg1 SINE Alu 4 302 -7 245 128 0 26 chr12 40457882 40457921 -103328534 - Alu SINE Alu -262 38 1 488 255 85 20 chr12 40457927 40458080 -103328375 - Charlie8 DNA MER1_type -2254 163 1 277 278 28 0 chr12 40458157 40458229 -103328226 + L2 LINE L2 3222 3295 -18 316 231 105 83 chr12 40458393 40458635 -103327820 - L1M4 LINE L1 -904 5242 4992 1593 131 30 8 chr12 40458635 40458872 -103327583 - AluSx SINE Alu -28 284 43 316 231 105 83 chr12 40458872 40458906 -103327549 - L1M4 LINE L1 -1154 4992 4960 2299 87 0 26 chr12 40458936 40459248 -103327207 - AluY SINE Alu -7 304 1 457 199 7 27 chr12 40459349 40459495 -103326960 + CT-rich Low_complexity Low_complexity 3 145 0 1873 122 56 4 chr12 40459495 40459785 -103326670 - AluSx SINE Alu 0 304 1 1920 139 27 17 chr12 40459807 40459969 -103326486 - AluSx SINE Alu -8 304 145 2225 106 3 3 chr12 40459969 40460271 -103326184 - AluSp SINE Alu -11 302 1 2265 89 33 3 chr12 40460273 40460577 -103325878 - AluSq SINE Alu 0 313 1 1920 139 27 17 chr12 40460577 40460712 -103325743 - AluSx SINE Alu -167 145 1 1482 163 80 28 chr12 40460832 40461121 -103325334 - AluJb SINE Alu -8 304 1 863 103 7 97 chr12 40461123 40461268 -103325187 - AluJb SINE Alu -178 134 3 2346 92 3 6 chr12 40461321 40461635 -103324820 - AluSp SINE Alu 0 313 1 1096 60 33 13 chr12 40461700 40461850 -103324605 - AluSp SINE Alu -160 153 1 23 0 0 0 chr12 40462176 40462199 -103324256 + AT_rich Low_complexity Low_complexity 1 23 0 547 161 42 8 chr12 40462301 40462419 -103324036 + AluSq/x SINE Alu 7 128 -184 1474 92 14 28 chr12 40462553 40462771 -103323684 + AluY SINE Alu 82 296 -15 2363 93 10 0 chr12 40462836 40463137 -103323318 + AluSx SINE Alu 1 304 -8 1887 189 78 27 chr12 40463174 40463587 -103322868 - Tigger2a DNA MER2_type 0 434 1 32 81 0 0 chr12 40463603 40463677 -103322778 + AT_rich Low_complexity Low_complexity 1 74 0 296 284 11 11 chr12 40463698 40463793 -103322662 + L1ME4a LINE L1 5493 5587 -591 256 241 161 22 chr12 40464064 40464201 -103322254 + L1ME4a LINE L1 5965 6120 -1 21 0 0 0 chr12 40464258 40464279 -103322176 + AT_rich Low_complexity Low_complexity 1 21 0 2213 107 0 0 chr12 40464646 40464935 -103321520 + AluSx SINE Alu 1 289 -23 828 209 141 0 chr12 40465127 40465318 -103321137 + MER20 DNA MER1_type 2 219 0 25 65 0 0 chr12 40465385 40465431 -103321024 + AT_rich Low_complexity Low_complexity 1 46 0 2400 174 27 10 chr12 40466889 40467378 -103319077 - L1MB7 LINE L1 -15 6169 5673 1767 139 3 76 chr12 40467418 40467735 -103318720 - AluJo SINE Alu -18 294 1 1890 164 0 0 chr12 40467748 40468040 -103318415 - AluSx SINE Alu -19 293 2 2111 137 0 6 chr12 40468267 40468580 -103317875 - AluSx SINE Alu -1 311 1 2064 117 7 0 chr12 40468819 40469100 -103317355 - AluSx SINE Alu -25 287 5 2193 133 0 0 chr12 40469799 40470093 -103316362 + AluSx SINE Alu 1 294 -18 1455 171 0 81 chr12 40470262 40470583 -103315872 + AluJo SINE Alu 1 295 -17 2015 147 28 3 chr12 40470740 40471067 -103315388 + MER7A DNA MER2_type 2 334 -12 5587 106 35 42 chr12 40471333 40472869 -103313586 - SVA Other Other -518 1004 1 498 108 0 0 chr12 40472869 40472943 -103313512 + (GAAA)n Simple_repeat Simple_repeat 2 75 0 212 298 11 21 chr12 40473229 40473323 -103313132 + GA-rich Low_complexity Low_complexity 3 95 0 578 311 67 59 chr12 40473769 40474412 -103312043 + L2 LINE L2 2549 3236 -36 273 231 15 0 chr12 40474875 40474940 -103311515 - MIR SINE MIR -108 154 89 * 276 286 38 53 chr12 40474936 40475029 -103311426 - MIR3 SINE MIR -31 177 85 1829 159 55 104 chr12 40475029 40475520 -103310935 - MLT1C LTR MaLR 0 467 1 276 286 38 53 chr12 40475520 40475559 -103310896 - MIR3 SINE MIR -123 85 47 726 201 7 0 chr12 40475743 40475897 -103310558 - L1MA10 LINE L1 -2 6332 6178 416 244 69 8 chr12 40475898 40476029 -103310426 - L1ME3 LINE L1 -138 6024 5886 773 203 14 88 chr12 40476030 40476084 -103310371 - MLT1A1 LTR MaLR -1 364 308 2228 103 0 3 chr12 40476084 40476376 -103310079 - AluSg SINE Alu -19 291 1 773 203 14 88 chr12 40476376 40476538 -103309917 - MLT1A1 LTR MaLR -57 308 164 944 182 5 42 chr12 40476554 40476746 -103309709 - MLT1A1 LTR MaLR -171 194 10 670 150 41 34 chr12 40476747 40476894 -103309561 - L1ME LINE L1 -688 5478 5331 2608 69 0 0 chr12 40477034 40477340 -103309115 - AluY SINE Alu -4 307 2 396 284 97 22 chr12 40477851 40478075 -103308380 - L1ME LINE L1 -1232 4914 4672 2463 88 0 0 chr12 40478083 40478389 -103308066 - AluSg SINE Alu -4 306 1 1993 121 43 0 chr12 40478390 40478671 -103307784 - AluSx SINE Alu -19 293 1 2241 125 6 3 chr12 40478784 40479096 -103307359 - AluSq SINE Alu 0 313 1 332 205 48 43 chr12 40479493 40479606 -103306849 - MLT1G1 LTR MaLR -1 580 441 309 221 21 21 chr12 40479769 40479880 -103306575 - MLT1I LTR MaLR -266 143 64 2306 121 0 0 chr12 40479937 40480242 -103306213 - AluSx SINE Alu -7 305 1 285 167 0 0 chr12 40480505 40480559 -103305896 + (CAG)n Simple_repeat Simple_repeat 1 54 0 2158 117 0 7 chr12 40480810 40481126 -103305329 + AluSx SINE Alu 1 314 0 285 279 81 9 chr12 40481141 40481252 -103305203 + MLT1J LTR MaLR 325 443 -68 2388 89 3 13 chr12 40483172 40483488 -103302967 + AluSq SINE Alu 1 313 0 49 43 0 0 chr12 40483607 40483677 -103302778 + AT_rich Low_complexity Low_complexity 1 70 0 4071 205 43 88 chr12 40484142 40485237 -103301218 - HERVL LTR ERVL -3958 1696 669 1560 148 104 32 chr12 40486613 40486891 -103299564 - AluJo SINE Alu -14 298 1 2390 86 0 10 chr12 40488417 40488721 -103297734 + AluSg SINE Alu 1 301 -9 800 331 51 14 chr12 40488742 40489113 -103297342 + L3 LINE CR1 544 928 -649 2180 119 0 0 chr12 40489120 40489423 -103297032 - AluY SINE Alu -8 303 1 354 289 52 15 chr12 40489438 40489573 -103296882 + L3 LINE CR1 1156 1295 -282 1606 164 0 36 chr12 40490367 40490641 -103295814 + AluJb SINE Alu 1 264 -48 1391 109 49 63 chr12 40490823 40491162 -103295293 + LTR12 LTR ERV1 55 257 -457 407 203 25 25 chr12 40491162 40491284 -103295171 + LTR30 LTR ERV1 544 716 -78 1651 113 36 2 chr12 40491284 40491526 -103294929 + LTR12 LTR ERV1 366 714 0 23 0 0 0 chr12 40492403 40492426 -103294029 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr12 40492606 40492635 -103293820 + AT_rich Low_complexity Low_complexity 1 29 0 5585 151 26 14 chr12 40492641 40493612 -103292843 - L1MA7 LINE L1 -3 6288 5307 2212 118 0 0 chr12 40493837 40494133 -103292322 + AluSg SINE Alu 1 296 -14 887 302 179 20 chr12 40494154 40494753 -103291702 + L1MEc LINE L1 39 772 -5624 1922 69 34 15 chr12 40494753 40495015 -103291440 + AluSg SINE Alu 44 310 0 887 302 179 20 chr12 40495015 40495130 -103291325 + L1MEc LINE L1 772 867 -5529 705 294 90 12 chr12 40495137 40495392 -103291063 + L1M3d LINE L1 5 279 -5612 760 248 12 40 chr12 40495679 40495929 -103290526 - L1MA9 LINE L1 -109 6203 5961 180 0 0 0 chr12 40496025 40496045 -103290410 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1440 255 91 10 chr12 40496045 40496531 -103289924 + L1M3d LINE L1 2142 2666 -3304 2007 90 0 131 chr12 40496561 40496896 -103289559 - AluSc SINE Alu -18 291 1 180 0 0 0 chr12 40497366 40497386 -103289069 + (T)n Simple_repeat Simple_repeat 1 20 0 2375 84 3 7 chr12 40497425 40497733 -103288722 + AluSc SINE Alu 1 307 -2 264 100 20 0 chr12 40498018 40498068 -103288387 - L1MB3 LINE L1 0 6183 6133 719 195 0 0 chr12 40498100 40498218 -103288237 - FLAM_C SINE Alu -15 118 1 880 219 5 5 chr12 40498219 40498411 -103288044 - L1MB4 LINE L1 -50 6130 5939 1906 140 0 0 chr12 40498414 40498693 -103287762 - AluJb SINE Alu -16 296 18 21 0 0 0 chr12 40498800 40498821 -103287634 + AT_rich Low_complexity Low_complexity 1 21 0 828 151 0 0 chr12 40500866 40500985 -103285470 + AluJb SINE Alu 2 120 -192 37 0 0 0 chr12 40500985 40501022 -103285433 + AT_rich Low_complexity Low_complexity 1 37 0 2285 119 0 0 chr12 40501456 40501758 -103284697 - AluSx SINE Alu -10 302 1 691 241 60 0 chr12 40501802 40501968 -103284487 - FRAM SINE Alu -3 173 1 486 262 222 12 chr12 40502264 40502512 -103283943 - LTR16B LTR ERVL -157 307 8 389 301 55 6 chr12 40502568 40502731 -103283724 - HERV16 LTR ERVL -94 4902 4732 936 211 81 46 chr12 40502834 40503150 -103283305 + MLT1E2 LTR MaLR 6 365 -259 242 266 174 0 chr12 40503200 40503309 -103283146 + L2 LINE L2 2579 2706 -608 479 242 128 31 chr12 40503522 40503749 -103282706 + MIR SINE MIR 14 262 0 935 234 33 0 chr12 40503799 40503983 -103282472 - Charlie1 DNA MER1_type -1437 1324 1135 1051 120 0 0 chr12 40504117 40504267 -103282188 - AluSc SINE Alu 0 309 160 505 224 75 78 chr12 40504288 40504404 -103282051 - L1MB4 LINE L1 -354 5808 5693 1612 171 13 70 chr12 40504404 40504720 -103281735 + AluJo SINE Alu 1 298 -14 505 224 75 78 chr12 40504720 40504858 -103281597 - L1MB4 LINE L1 -469 5693 5555 630 211 0 23 chr12 40504859 40504992 -103281463 - FLAM_A SINE Alu -3 130 1 309 321 14 29 chr12 40505103 40505243 -103281212 - L1MB4 LINE L1 -1312 4834 4697 1251 223 249 34 chr12 40505278 40505372 -103281083 + LTR50 LTR ERVL 72 144 -651 2217 121 7 0 chr12 40505372 40505679 -103280776 - AluSq SINE Alu -4 309 1 1251 223 249 34 chr12 40505679 40506090 -103280365 + LTR50 LTR ERVL 144 686 -109 358 234 184 59 chr12 40506130 40506386 -103280069 + L1M4 LINE L1 3852 4139 -2007 1879 200 138 52 chr12 40506516 40507210 -103279245 - L1MC5 LINE L1 -160 7801 7048 1891 145 14 43 chr12 40507211 40507371 -103279084 - MLT1A1 LTR MaLR -3 362 199 2004 80 112 0 chr12 40507371 40507647 -103278808 - AluSg SINE Alu -3 307 1 1891 145 14 43 chr12 40507647 40507831 -103278624 - MLT1A1 LTR MaLR -166 199 28 405 93 0 0 chr12 40507832 40507886 -103278569 + U6 snRNA snRNA 2 55 -52 23 0 0 0 chr12 40507890 40507913 -103278542 + AT_rich Low_complexity Low_complexity 1 23 0 342 166 23 10 chr12 40508033 40508107 -103278348 + AluS SINE Alu 1 58 -245 1362 155 39 0 chr12 40509336 40509568 -103276887 - LTR45 LTR ERV1 -284 241 1 * 1842 168 128 114 chr12 40509568 40509819 -103276636 - MER21B LTR ERV1 -276 587 341 5779 50 32 17 chr12 40509819 40510574 -103275881 - MER4E LTR ERV1 0 766 1 1842 168 128 114 chr12 40510574 40510880 -103275575 - MER21B LTR ERV1 -522 341 22 456 302 32 48 chr12 40510942 40511319 -103275136 - L1MB4 LINE L1 -2309 3837 3457 2037 155 0 0 chr12 40511319 40511622 -103274833 - AluSx SINE Alu -9 303 1 456 302 32 48 chr12 40511622 40511650 -103274805 - L1MB4 LINE L1 -2689 3457 3430 * 1408 197 15 42 chr12 40511626 40511956 -103274499 - L1PA13 LINE L1 -2 6161 5841 26 0 0 0 chr12 40512115 40512141 -103274314 + GC_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr12 40512175 40512196 -103274259 + GC_rich Low_complexity Low_complexity 1 21 0 1196 97 5 39 chr12 40562367 40562574 -103223881 + AluSc SINE Alu 110 309 0 420 238 98 67 chr12 40562616 40562809 -103223646 - L1M4 LINE L1 -1094 5052 4854 743 337 75 68 chr12 40563169 40563379 -103223076 + HAL1 LINE L1 1074 1281 -1226 683 208 14 0 chr12 40563379 40563523 -103222932 + L1MA10 LINE L1 6189 6334 0 743 337 75 68 chr12 40563523 40563977 -103222478 + HAL1 LINE L1 1281 1743 -764 976 280 73 10 chr12 40564358 40564658 -103221797 + MLT1I LTR MaLR 91 409 0 2198 198 29 2 chr12 40564783 40565198 -103221257 - MSTB LTR MaLR 0 426 1 2133 125 0 0 chr12 40565531 40565842 -103220613 - AluSx SINE Alu -1 311 1 196 208 0 21 chr12 40566165 40566213 -103220242 - L2 LINE L2 -1903 1411 1365 266 309 10 0 chr12 40567001 40567098 -103219357 - MIR3 SINE MIR -29 179 82 1124 141 11 0 chr12 40567899 40568083 -103218372 + L1PB4 LINE L1 5971 6156 0 240 344 81 22 chr12 40568217 40568360 -103218095 - MIR3 SINE MIR -63 145 13 1617 135 6 86 chr12 40568452 40568778 -103217677 + AluJo SINE Alu 1 300 -12 269 299 179 8 chr12 40569071 40569205 -103217250 + MIR3 SINE MIR 52 208 0 637 262 53 25 chr12 40570419 40570663 -103215792 + L2 LINE L2 468 718 -2596 406 262 41 25 chr12 40570927 40571049 -103215406 + L2 LINE L2 708 831 -2483 7393 93 8 24 chr12 40571775 40572991 -103213464 + L1MA2 LINE L1 5108 6304 0 1917 110 64 3 chr12 40573055 40573337 -103213118 - AluSg SINE Alu -11 299 1 667 276 76 32 chr12 40573505 40573874 -103212581 + MLT1J2 LTR MaLR 20 404 -46 239 238 79 16 chr12 40574265 40574328 -103212127 + L2 LINE L2 3245 3311 -2 484 101 261 0 chr12 40574526 40574645 -103211810 - MER33 DNA MER1_type -1 362 213 358 215 168 19 chr12 40574638 40574745 -103211710 - MER33 DNA MER1_type -197 127 5 * 279 97 32 16 chr12 40575154 40575216 -103211239 + CT-rich Low_complexity Low_complexity 1 63 0 29 28 0 0 chr12 40575270 40575306 -103211149 + GC_rich Low_complexity Low_complexity 1 36 0 252 333 164 26 chr12 40577013 40577244 -103209211 - L3b LINE CR1 -219 1364 1102 285 390 113 10 chr12 40577783 40577978 -103208477 - L3 LINE CR1 -1358 219 5 1943 150 0 10 chr12 40579167 40579481 -103206974 - AluSx SINE Alu -1 311 1 746 219 176 0 chr12 40579782 40579987 -103206468 - MIR SINE MIR -20 242 2 2130 96 7 7 chr12 40580006 40580299 -103206156 + AluSg SINE Alu 1 293 -17 486 206 282 24 chr12 40581780 40581950 -103204505 + MIR SINE MIR 49 262 0 188 246 70 0 chr12 40581967 40582024 -103204431 - L3 LINE CR1 -52 1525 1465 324 229 322 44 chr12 40582130 40582335 -103204120 - MIR SINE MIR 0 262 1 306 238 41 33 chr12 40583604 40583726 -103202729 - MER103 DNA DNA -35 131 9 915 168 21 37 chr12 40586705 40586895 -103199560 + MER5A DNA MER1_type 3 189 0 228 288 51 0 chr12 40587518 40587577 -103198878 - tRNA-Thr-ACT tRNA tRNA -15 62 1 2167 79 0 30 chr12 40588368 40588671 -103197784 - AluY SINE Alu -17 294 1 201 194 16 81 chr12 40588681 40588743 -103197712 - L2 LINE L2 -8 3305 3248 322 212 153 0 chr12 40589329 40589414 -103197041 - MER96 DNA MER1_type? 0 175 78 553 205 90 80 chr12 40589970 40590170 -103196285 - L1M2 LINE L1 -741 5556 5352 270 318 149 0 chr12 40590347 40590454 -103196001 + L2 LINE L2 3146 3268 -4 205 336 135 0 chr12 40590622 40590726 -103195729 + L2 LINE L2 3154 3271 -1 679 191 124 65 chr12 40590837 40591079 -103195376 - MER61D LTR ERV1 -3 750 338 1764 153 3 7 chr12 40591762 40592057 -103194398 - AluJb SINE Alu -10 302 9 2526 90 38 90 chr12 40592451 40592951 -103193504 + SVA Other Other 393 866 -520 1214 70 0 47 chr12 40592980 40593451 -103193004 + SVA Other Other 635 866 -520 6269 60 16 54 chr12 40593518 40594510 -103191945 + SVA Other Other 433 1386 0 359 267 83 33 chr12 40595270 40595390 -103191065 - MIR3 SINE MIR -38 170 45 1796 157 20 20 chr12 40598497 40598657 -103187798 - AluSx SINE Alu -13 299 137 2251 105 0 13 chr12 40598657 40598961 -103187494 - AluSx SINE Alu -12 300 1 1796 157 20 20 chr12 40598961 40599099 -103187356 - AluSx SINE Alu -174 138 1 220 261 269 8 chr12 40599103 40599222 -103187233 - MER5A DNA MER1_type 0 189 40 233 381 12 12 chr12 40599360 40599444 -103187011 - MIR SINE MIR -172 90 7 44636 38 2 2 chr12 40600034 40606016 -103180439 + L1PA3 LINE L1 26 6005 -150 231 179 26 0 chr12 40606172 40606211 -103180244 + MLT1K LTR MaLR 186 225 -363 911 125 15 0 chr12 40606241 40606377 -103180078 - AluSg/x SINE Alu -15 297 160 2735 29 3 6 chr12 40606397 40606708 -103179747 + L1PA2 LINE L1 5846 6155 0 2903 3 0 0 chr12 40608980 40609288 -103177167 + AluYa5 SINE Alu 1 308 -3 232 239 204 18 chr12 40609290 40609403 -103177052 - MIR SINE MIR -3 259 126 905 218 0 6 chr12 40609601 40609780 -103176675 + LTR41 LTR ERVL 1 178 -595 319 281 0 0 chr12 40609812 40609876 -103176579 + MER58B DNA MER1_type 1 64 -277 289 188 42 52 chr12 40610355 40610451 -103176004 + LTR41 LTR ERVL 673 767 -6 440 111 100 0 chr12 40610466 40610556 -103175899 + L1MA5 LINE L1 6201 6299 -1 2297 85 3 7 chr12 40610734 40611029 -103175426 + AluY SINE Alu 2 295 -16 23 68 0 0 chr12 40611261 40611305 -103175150 + AT_rich Low_complexity Low_complexity 1 44 0 694 272 25 71 chr12 40611512 40611836 -103174619 + L1MDa LINE L1 2 310 -6230 2251 88 3 3 chr12 40612311 40612608 -103173847 + AluSc SINE Alu 1 297 -12 939 202 59 95 chr12 40612615 40612759 -103173696 + L1MDa LINE L1 1301 1449 -5091 2094 109 0 35 chr12 40612759 40613070 -103173385 + AluSx SINE Alu 1 300 -12 939 202 59 95 chr12 40613070 40613106 -103173349 + L1MDa LINE L1 1449 1485 -5055 4534 62 20 0 chr12 40613106 40613652 -103172803 + L1PA7 LINE L1 5598 6154 0 939 202 59 95 chr12 40613652 40613931 -103172524 + L1MDa LINE L1 1485 1744 -4796 1036 226 144 33 chr12 40614187 40614492 -103171963 + Charlie1a DNA MER1_type 1 339 -1116 709 227 207 5 chr12 40616020 40616223 -103170232 + MER45C DNA AcHobo 1 244 -709 24 77 0 0 chr12 40616930 40616982 -103169473 + AT_rich Low_complexity Low_complexity 1 52 0 1770 123 95 58 chr12 40617603 40617928 -103168527 + MER1B DNA MER1_type 1 337 0 183 42 0 0 chr12 40618645 40618669 -103167786 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1510 164 3 45 chr12 40619152 40619462 -103166993 - AluJb SINE Alu -15 297 1 518 0 16 0 chr12 40619502 40619564 -103166891 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 625 194 15 22 chr12 40619575 40619709 -103166746 - AluJo SINE Alu -178 134 2 892 201 37 53 chr12 40620027 40620085 -103166370 - MER5A DNA MER1_type -3 186 129 1745 136 28 28 chr12 40620085 40620410 -103166045 + AluJb SINE Alu 1 325 0 892 201 37 53 chr12 40620410 40620538 -103165917 - MER5A DNA MER1_type -60 129 1 280 217 87 43 chr12 40620865 40620934 -103165521 + MIR3 SINE MIR 86 157 -51 2054 75 0 4 chr12 40621003 40621313 -103165142 - AluY SINE Alu 0 311 35 1983 139 41 6 chr12 40623272 40623588 -103162867 - MER51B LTR ERV1 -2 375 49 640 54 140 11 chr12 40623603 40623696 -103162759 - MER51A LTR ERV1 -529 105 1 319 230 35 11 chr12 40623916 40624003 -103162452 + MIR SINE MIR 160 248 -14 25 0 0 0 chr12 40624247 40624272 -103162183 + AT_rich Low_complexity Low_complexity 1 25 0 201 121 0 0 chr12 40625133 40625166 -103161289 + (TAA)n Simple_repeat Simple_repeat 3 35 0 313 315 31 31 chr12 40625206 40625333 -103161122 - L2 LINE L2 0 3313 3187 364 264 111 21 chr12 40625341 40625485 -103160970 - MIR SINE MIR -65 197 41 1241 223 44 54 chr12 40625493 40625901 -103160554 - MLT1A1 LTR MaLR 0 390 1 27 73 0 0 chr12 40626818 40626873 -103159582 + AT_rich Low_complexity Low_complexity 1 55 0 763 266 114 50 chr12 40627299 40627845 -103158610 - L1ME4a LINE L1 -12 6109 5529 688 151 0 0 chr12 40627849 40627964 -103158491 - AluJo SINE Alu 0 305 191 609 164 67 0 chr12 40627969 40628073 -103158382 - AluJo SINE Alu -201 111 1 265 250 105 0 chr12 40628078 40628202 -103158253 - L1ME4a LINE L1 -2558 5437 5301 991 268 61 22 chr12 40628209 40628700 -103157755 + MER90 LTR ERV1 14 559 -16 421 320 88 22 chr12 40628703 40629022 -103157433 - L1ME4a LINE L1 -881 5265 4926 282 274 97 18 chr12 40629142 40629255 -103157200 + L2 LINE L2 3189 3310 -3 261 287 113 0 chr12 40630438 40630553 -103155902 - MIR3 SINE MIR -47 161 34 283 93 0 37 chr12 40630872 40630926 -103155529 + (TTC)n Simple_repeat Simple_repeat 1 52 0 452 72 0 155 chr12 40630926 40630975 -103155480 - MER41A LTR ERV1 -73 481 453 2469 69 10 0 chr12 40630975 40631281 -103155174 + AluY SINE Alu 1 309 -2 452 72 0 155 chr12 40631281 40631328 -103155127 - MER41A LTR ERV1 -101 453 400 360 305 152 6 chr12 40631455 40631619 -103154836 + MIR SINE MIR 4 191 -71 1084 169 196 8 chr12 40633763 40634018 -103152437 - MER58B DNA MER1_type -7 334 32 502 231 0 0 chr12 40634261 40634352 -103152103 + Tigger3(Golem) DNA MER2_type 2938 3028 -1 2387 287 61 28 chr12 40634385 40635397 -103151058 - HAL1 LINE L1 -1341 1166 121 5261 148 25 80 chr12 40635410 40635678 -103150777 - L1MA5 LINE L1 0 6300 6019 2278 107 0 0 chr12 40635678 40635976 -103150479 - AluSg SINE Alu -8 302 5 5261 148 25 80 chr12 40635976 40636919 -103149536 - L1MA5 LINE L1 -281 6019 5118 2681 161 66 108 chr12 40637039 40637679 -103148776 + L1M4c LINE L1 5 617 -5767 * 4229 160 55 52 chr12 40637676 40638606 -103147849 + L1MC3 LINE L1 6845 7777 -8 2074 123 17 7 chr12 40638622 40638914 -103147541 - AluSx SINE Alu -17 295 1 237 177 35 57 chr12 40638935 40639076 -103147379 + (TTATA)n Simple_repeat Simple_repeat 5 142 0 1624 182 55 0 chr12 40639292 40639583 -103146872 + AluJo SINE Alu 1 307 -5 1645 176 94 77 chr12 40640196 40640671 -103145784 + MER66A LTR ERV1 97 478 0 2021 114 3 27 chr12 40641032 40641331 -103145124 + AluSx SINE Alu 1 292 -20 414 267 86 27 chr12 40641525 40641712 -103144743 + L1ME LINE L1 5627 5791 -330 348 295 187 7 chr12 40641713 40641852 -103144603 + MIR SINE MIR 32 195 -67 601 275 22 17 chr12 40642022 40642200 -103144255 - MIR SINE MIR 0 262 84 1100 308 51 34 chr12 40642262 40642659 -103143796 - MLT1L LTR MaLR -4 611 200 2030 164 32 18 chr12 40642659 40642972 -103143483 + MER7A DNA MER2_type 2 320 -2718 1601 88 9 18 chr12 40642972 40643189 -103143266 + AluY SINE Alu 83 297 -14 2030 164 32 18 chr12 40643189 40643217 -103143238 + MER7A DNA MER2_type 320 346 0 1100 308 51 34 chr12 40643217 40643384 -103143071 - MLT1L LTR MaLR -415 200 37 691 227 136 54 chr12 40643402 40643644 -103142811 + MLT1F1 LTR MaLR 60 321 -246 623 224 6 65 chr12 40643688 40643766 -103142689 + LTR33 LTR ERVL 1 65 -456 3605 122 18 50 chr12 40643766 40644309 -103142146 - MER1A DNA MER1_type 0 527 2 623 224 6 65 chr12 40644309 40644400 -103142055 + LTR33 LTR ERVL 65 160 -361 1748 223 49 13 chr12 40644433 40644819 -103141636 + MLT1C LTR MaLR 66 465 -2 225 338 86 0 chr12 40645034 40645232 -103141223 - L1ME LINE L1 -207 5914 5700 214 286 78 13 chr12 40646224 40646301 -103140154 - L2 LINE L2 -5 3267 3186 591 294 151 65 chr12 40646583 40647087 -103139368 - L2 LINE L2 0 3313 2761 590 271 121 19 chr12 40647087 40647294 -103139161 + MER101B LTR ERV1 1 228 -342 252 214 103 86 chr12 40647439 40647556 -103138899 + MER101 LTR ERV1 327 445 -29 734 300 123 11 chr12 40647609 40647886 -103138569 - L2 LINE L2 -575 2739 2432 236 209 33 5 chr12 40647966 40648031 -103138424 + MLT1I LTR MaLR 98 142 -267 1366 246 121 45 chr12 40648107 40648179 -103138276 + L1MCa LINE L1 959 1024 -5583 7810 18 0 1 chr12 40648179 40649422 -103137033 + L1PA3 LINE L1 4913 6155 0 1366 246 121 45 chr12 40649422 40649802 -103136653 + L1MCa LINE L1 1024 1374 -5233 194 0 0 37 chr12 40649802 40649829 -103136626 + (CA)n Simple_repeat Simple_repeat 2 27 0 1366 246 121 45 chr12 40649829 40650091 -103136364 + L1MCa LINE L1 1374 1615 -4992 2426 90 0 6 chr12 40650091 40650402 -103136053 + AluY SINE Alu 1 309 -2 1366 246 121 45 chr12 40650402 40650718 -103135737 + L1MCa LINE L1 1615 2277 -4330 727 115 0 0 chr12 40650718 40650814 -103135641 + L1P3 LINE L1 1 96 -6365 * 20142 151 22 35 chr12 40650812 40651809 -103134646 + L1MC2 LINE L1 1162 2170 -4489 2231 106 0 16 chr12 40651809 40652121 -103134334 - AluY SINE Alu -4 307 1 20142 151 22 35 chr12 40652121 40654180 -103132275 + L1MC2 LINE L1 2170 4254 -2405 517 91 0 0 chr12 40654180 40654255 -103132200 + L1PA7 LINE L1 6078 6154 0 20142 151 22 35 chr12 40654255 40654346 -103132109 + L1MC2 LINE L1 4254 4345 -2314 2377 66 0 23 chr12 40654346 40654649 -103131806 + AluY SINE Alu 1 296 -15 20142 151 22 35 chr12 40654649 40655019 -103131436 + L1MC2 LINE L1 4345 4718 -1941 2229 92 3 3 chr12 40655019 40655322 -103131133 + AluSg SINE Alu 1 303 -7 20142 151 22 35 chr12 40655322 40655844 -103130611 + L1MC2 LINE L1 4718 5245 -1414 1066 78 0 26 chr12 40655844 40655998 -103130457 + L1PA10 LINE L1 6009 6158 -10 20142 151 22 35 chr12 40655998 40657413 -103129042 + L1MC2 LINE L1 5245 6504 -155 1499 297 100 53 chr12 40657476 40657803 -103128652 + L1MEd LINE L1 46 356 -5763 1489 163 43 63 chr12 40657803 40658104 -103128351 + AluJo SINE Alu 2 296 -16 1499 297 100 53 chr12 40658104 40658934 -103127521 + L1MEd LINE L1 356 1257 -4862 843 64 0 0 chr12 40659124 40659234 -103127221 + (GGAA)n Simple_repeat Simple_repeat 1 110 0 375 315 96 40 chr12 40661263 40661514 -103124941 + HAL1b LINE L1 2 266 -1082 594 305 28 21 chr12 40661549 40661831 -103124624 + HAL1b LINE L1 331 614 -734 220 274 0 27 chr12 40661920 40661993 -103124462 + GA-rich Low_complexity Low_complexity 2 72 0 276 288 6 25 chr12 40662181 40662344 -103124111 + L1MEd LINE L1 2130 2289 -3840 284 0 28 0 chr12 40662348 40662384 -103124071 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1580 136 121 11 chr12 40662572 40662931 -103123524 + MSTA LTR MaLR 1 428 0 742 335 38 21 chr12 40662983 40663177 -103123278 + L1MEd LINE L1 2647 2836 -3293 181 0 33 33 chr12 40663177 40663207 -103123248 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2011 139 3 0 chr12 40663210 40663504 -103122951 - AluSx SINE Alu -17 295 1 742 335 38 21 chr12 40663504 40663782 -103122673 + L1MEd LINE L1 2837 3131 -2998 891 275 19 30 chr12 40664025 40664396 -103122059 + L1MEd LINE L1 3993 4359 -1770 * 2043 124 39 117 chr12 40664375 40664812 -103121643 + L1PA13 LINE L1 5740 6142 -4 1114 239 45 6 chr12 40664793 40665148 -103121307 + L1MEd LINE L1 4341 4709 -1420 * 954 242 37 24 chr12 40665151 40665531 -103120924 + L1MEd LINE L1 4782 5166 -963 430 110 0 85 chr12 40665531 40665613 -103120842 - AluSg/x SINE Alu -19 293 219 5753 308 55 23 chr12 40665735 40666103 -103120352 - ERVL LTR ERVL -1737 3917 3562 2012 145 7 0 chr12 40666103 40666399 -103120056 + AluJb SINE Alu 1 298 -14 5753 308 55 23 chr12 40666399 40667947 -103118508 - ERVL LTR ERVL -2092 3562 1916 2251 99 10 10 chr12 40667947 40668260 -103118195 - AluSq SINE Alu 0 313 1 5753 308 55 23 chr12 40668260 40668605 -103117850 - ERVL LTR ERVL -3738 1916 1583 299 109 0 0 chr12 40668924 40668970 -103117485 + Alu SINE Alu 255 300 -1 602 340 77 27 chr12 40668978 40669801 -103116654 - ERVL LTR ERVL -4410 1244 352 985 242 70 110 chr12 40670084 40670887 -103115568 - LTR41 LTR ERVL 0 773 3 878 231 71 29 chr12 40670887 40671237 -103115218 - L1M4 LINE L1 -1570 4576 4212 1980 53 72 0 chr12 40671268 40671532 -103114923 - L1PA4 LINE L1 -3 6152 5870 4942 173 31 39 chr12 40671542 40672059 -103114396 - L1MA10 LINE L1 -13 6321 5802 213 39 0 0 chr12 40672059 40672085 -103114370 + (CA)n Simple_repeat Simple_repeat 1 26 0 4942 173 31 39 chr12 40672085 40672826 -103113629 - L1MA10 LINE L1 -532 5802 5051 1602 256 52 8 chr12 40672823 40673797 -103112658 - L1ME LINE L1 -460 5704 4695 * 5606 145 44 17 chr12 40673792 40675207 -103111248 - L1MA8 LINE L1 0 6291 4848 229 57 0 0 chr12 40675214 40675249 -103111206 - L1M2c LINE L1 -4479 2628 2594 4200 166 34 14 chr12 40675255 40676088 -103110367 - L1M2c LINE L1 -4496 2611 1763 2618 208 74 22 chr12 40676081 40676702 -103109753 - L1M2c LINE L1 -6377 653 1 * 3172 231 102 27 chr12 40676695 40677796 -103108659 - L1ME LINE L1 -1421 4725 3543 256 299 25 5 chr12 40678084 40678285 -103108170 + L1ME2 LINE L1 2121 2325 -3821 1378 212 58 49 chr12 40678497 40678926 -103107529 + MLT1C LTR MaLR 17 449 -18 1817 175 7 7 chr12 40679024 40679321 -103107134 - AluJo SINE Alu -15 297 1 2486 57 0 10 chr12 40679403 40679717 -103106738 + AluY SINE Alu 1 311 0 265 259 0 18 chr12 40679846 40679958 -103106497 + L1ME2 LINE L1 2879 2988 -3158 240 291 71 25 chr12 40680927 40681123 -103105332 + L1ME2 LINE L1 4628 4832 -1314 1384 103 5 0 chr12 40681151 40681336 -103105119 + AluSc SINE Alu 1 186 -123 405 122 100 0 chr12 40681447 40681537 -103104918 - L1MA5 LINE L1 -1 6299 6201 271 188 42 52 chr12 40681552 40681648 -103104807 - LTR41 LTR ERVL -6 767 673 508 234 19 9 chr12 40681896 40682003 -103104452 - FLAM_C SINE Alu -35 108 1 2612 36 3 3 chr12 40682084 40682388 -103104067 + AluY SINE Alu 1 304 -7 1403 182 68 5 chr12 40682389 40682755 -103103700 + L1ME2 LINE L1 5363 5817 -347 1228 131 0 0 chr12 40682775 40682950 -103103505 + AluSg/x SINE Alu 128 302 -8 791 246 167 21 chr12 40682954 40683242 -103103213 + L1ME2 LINE L1 5833 6162 -2 1120 140 60 157 chr12 40683379 40683726 -103102729 + Charlie4a DNA MER1_type 37 339 -1622 2863 111 53 31 chr12 40683726 40684238 -103102217 - L1MB3 LINE L1 0 6183 5661 1120 140 60 157 chr12 40684238 40684303 -103102152 + Charlie4a DNA MER1_type 339 409 -99 1791 125 14 7 chr12 40684323 40684604 -103101851 - AluSx SINE Alu -27 285 3 976 155 207 52 chr12 40684648 40684899 -103101556 - AluJo SINE Alu -12 290 1 470 329 41 43 chr12 40684970 40685387 -103101068 + HAL1b LINE L1 159 574 -774 1408 177 78 45 chr12 40685472 40685919 -103100536 + L1MC5 LINE L1 7084 7545 -416 825 203 56 49 chr12 40685923 40686229 -103100226 + L1MC5 LINE L1 7603 7910 -51 22 0 0 0 chr12 40686240 40686262 -103100193 + AT_rich Low_complexity Low_complexity 1 22 0 1053 199 28 0 chr12 40686354 40686565 -103099890 + AluJo SINE Alu 84 300 -12 227 229 72 0 chr12 40686568 40686651 -103099804 + HAL1 LINE L1 2044 2132 -375 1334 184 36 183 chr12 40686707 40686801 -103099654 - MER69 DNA AcHobo -301 2225 2119 2938 6 0 0 chr12 40686801 40687119 -103099336 + AluYb8 SINE Alu 1 318 0 1334 184 36 183 chr12 40687119 40687884 -103098571 - MER69 DNA AcHobo -407 2119 1492 6850 128 36 12 chr12 40687916 40688155 -103098300 - L1MA2 LINE L1 0 6304 6072 240 35 0 0 chr12 40688155 40688184 -103098271 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 6850 128 36 12 chr12 40688184 40689509 -103096946 - L1MA2 LINE L1 -232 6072 4687 248 141 13 39 chr12 40689519 40689597 -103096858 + (TA)n Simple_repeat Simple_repeat 1 76 0 2516 85 11 6 chr12 40689603 40689957 -103096498 + L1PB1 LINE L1 5783 6138 -13 28 29 0 0 chr12 40689995 40690030 -103096425 + AT_rich Low_complexity Low_complexity 1 35 0 853 295 120 38 chr12 40691044 40691452 -103095003 - L1MC4a LINE L1 -747 5399 5026 2332 103 0 3 chr12 40691452 40691763 -103094692 - AluSx SINE Alu -2 310 1 853 295 120 38 chr12 40691763 40693201 -103093254 - L1MC4a LINE L1 -1120 5026 3928 210 143 0 0 chr12 40693241 40693276 -103093179 + (TA)n Simple_repeat Simple_repeat 2 36 0 327 317 137 34 chr12 40693381 40693703 -103092752 - L1MC4a LINE L1 -2412 3734 3380 287 226 36 12 chr12 40693705 40693789 -103092666 - L1MC4a LINE L1 -3139 3007 2922 693 176 0 7 chr12 40693850 40693986 -103092469 - L1MA10 LINE L1 -3 6331 6197 325 293 0 19 chr12 40694103 40694209 -103092246 - MER5A DNA MER1_type -71 118 15 259 297 54 54 chr12 40694305 40694416 -103092039 + MIR SINE MIR 14 124 -138 293 0 27 0 chr12 40695077 40695114 -103091341 + (TG)n Simple_repeat Simple_repeat 1 38 0 261 0 0 0 chr12 40695759 40695788 -103090667 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 262 356 7 0 chr12 40696203 40696352 -103090103 + T-rich Low_complexity Low_complexity 3 152 0 2018 134 3 6 chr12 40697121 40697442 -103089013 - Tigger1 DNA MER2_type -43 2375 2056 853 184 6 17 chr12 40697442 40697621 -103088834 + FAM SINE Alu 1 44 -5 3886 102 5 10 chr12 40697621 40698218 -103088237 - Tigger1 DNA MER2_type -360 2058 1465 1766 147 58 10 chr12 40698567 40698859 -103087596 - AluJb SINE Alu -6 306 1 1920 61 0 0 chr12 40699169 40699399 -103087056 - AluY SINE Alu -6 305 76 673 281 18 0 chr12 40699670 40699841 -103086614 - MER21B LTR ERV1 -367 496 323 * 3984 108 10 3 chr12 40699839 40700450 -103086005 - Tigger1 DNA MER2_type -941 1477 863 3935 136 54 0 chr12 40700447 40700937 -103085518 - Tigger1 DNA MER2_type -1713 705 168 * 264 59 0 0 chr12 40700937 40700971 -103085484 + (TAA)n Simple_repeat Simple_repeat 3 36 0 3935 136 54 0 chr12 40700971 40701149 -103085306 - Tigger1 DNA MER2_type -2250 168 1 490 76 0 0 chr12 40702537 40702603 -103083852 - L1PA8 LINE L1 -5 6167 6102 251 328 0 9 chr12 40702827 40702943 -103083512 - L1ME4a LINE L1 -44 6077 5963 489 303 93 17 chr12 40703014 40703304 -103083151 - L1ME4a LINE L1 -174 5947 5636 637 270 81 31 chr12 40703322 40703544 -103082911 - MIR SINE MIR -5 257 25 330 175 0 0 chr12 40703563 40703620 -103082835 - L1ME4a LINE L1 -500 5621 5565 3620 156 23 5 chr12 40705083 40705691 -103080764 + LTR31 LTR ERV1 1 619 0 2936 160 33 86 chr12 40706095 40706825 -103079630 - LTR8 LTR ERV1 0 691 1 277 343 70 14 chr12 40707093 40707236 -103079219 - L2 LINE L2 -205 3067 2917 322 285 76 104 chr12 40707499 40707664 -103078791 - L3b LINE CR1 -28 1555 1400 2026 141 3 32 chr12 40707664 40707977 -103078478 + AluSx SINE Alu 1 304 -8 322 285 76 104 chr12 40707977 40708099 -103078356 - L3b LINE CR1 -183 1400 1276 566 258 54 6 chr12 40708677 40708843 -103077612 + MIR SINE MIR 40 212 -50 23 0 0 0 chr12 40708845 40708868 -103077587 + AT_rich Low_complexity Low_complexity 1 23 0 1660 193 120 15 chr12 40709359 40709752 -103076703 - MER63B DNA MER1_type -1 435 2 674 260 85 36 chr12 40709814 40710037 -103076418 + MIR SINE MIR 2 235 -27 409 327 12 28 chr12 40710090 40710341 -103076114 - L1M4 LINE L1 -2158 3988 3742 418 97 0 16 chr12 40710589 40710651 -103075804 - MER5B DNA MER1_type -1 177 117 3973 82 47 12 chr12 40710651 40711227 -103075228 + L1PA13 LINE L1 5563 6158 -5 414 0 0 0 chr12 40711231 40711277 -103075178 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 431 129 129 0 chr12 40711287 40711388 -103075067 + L1MA7 LINE L1 6169 6282 -9 228 288 22 43 chr12 40711436 40711575 -103074880 - FRAM SINE Alu 0 166 31 625 224 0 0 chr12 40711752 40711859 -103074596 - FRAM SINE Alu -70 106 1 484 214 0 0 chr12 40711871 40711960 -103074495 - MER5B DNA MER1_type -89 89 1 2429 68 3 0 chr12 40712230 40712523 -103073932 - AluSp SINE Alu -18 295 2 2437 117 5 0 chr12 40712600 40712968 -103073487 - L1PB1 LINE L1 0 6151 5782 316 307 0 0 chr12 40712980 40713068 -103073387 + L1MC4 LINE L1 6615 6702 -1340 239 227 45 0 chr12 40713075 40713163 -103073292 - L1MC4 LINE L1 -1337 6705 6614 8675 175 28 4 chr12 40713165 40715494 -103070961 - L1P5 LINE L1 -359 5792 3431 3279 223 11 0 chr12 40715491 40716326 -103070129 + L1P5 LINE L1 2578 3421 -2725 * 301 248 20 30 chr12 40716327 40716428 -103070027 - L1M4 LINE L1 -2974 3172 3073 304 229 0 0 chr12 40717035 40717096 -103069359 - MER58A DNA MER1_type 0 224 164 418 151 0 32 chr12 40717106 40717199 -103069256 + MER53 DNA DNA 97 186 -3 * 520 168 0 0 chr12 40717116 40717211 -103069244 - MER53 DNA DNA -94 95 1 774 213 31 0 chr12 40717220 40717380 -103069075 - MER58A DNA MER1_type 0 165 1 786 233 11 11 chr12 40717388 40717577 -103068878 - MER5A DNA MER1_type 0 189 1 218 299 30 0 chr12 40717734 40717801 -103068654 - MER91A DNA MER1_type 0 196 128 3593 75 15 2 chr12 40717820 40718298 -103068157 - L1PA11 LINE L1 0 6174 5691 555 305 30 0 chr12 40718298 40718429 -103068026 - MER91A DNA MER1_type -44 152 18 218 284 105 21 chr12 40718951 40719046 -103067409 + L2 LINE L2 3168 3270 -2 195 422 0 0 chr12 40719208 40719310 -103067145 - L3 LINE CR1 -220 1357 1256 317 256 51 58 chr12 40719323 40719479 -103066976 + L1M4 LINE L1 2894 3048 -3098 2187 97 37 0 chr12 40719891 40720189 -103066266 + AluSx SINE Alu 2 310 -2 231 242 0 0 chr12 40720189 40720251 -103066204 + GA-rich Low_complexity Low_complexity 1 62 0 2105 137 0 3 chr12 40720302 40720602 -103065853 + AluJb SINE Alu 12 310 -2 239 248 64 57 chr12 40720747 40720888 -103065567 + L1MDa LINE L1 1665 1806 -4734 939 186 61 96 chr12 40720945 40721257 -103065198 + MLT1E1 LTR MaLR 287 587 -67 292 124 56 0 chr12 40721334 40721400 -103065055 + MLT1E1 LTR MaLR 433 654 0 2385 60 3 3 chr12 40721408 40721706 -103064749 - AluY SINE Alu -13 298 1 896 261 86 58 chr12 40721720 40722163 -103064292 + L1M4 LINE L1 3341 3813 -2333 1756 131 52 49 chr12 40722163 40722469 -103063986 - AluJo SINE Alu 0 312 6 896 261 86 58 chr12 40722469 40722738 -103063717 + L1M4 LINE L1 3813 4073 -2073 2161 99 0 3 chr12 40725113 40725459 -103060996 + AluSg1 SINE Alu 1 345 0 2509 110 77 28 chr12 40726349 40726776 -103059679 - MER83 LTR ERV1 0 448 1 387 0 0 0 chr12 40727250 40727290 -103059165 + (CA)n Simple_repeat Simple_repeat 1 83 0 387 0 0 0 chr12 40727290 40727333 -103059122 + (CA)n Simple_repeat Simple_repeat 2 44 0 5466 107 58 11 chr12 40727512 40728478 -103057977 + L1MA8 LINE L1 5281 6291 0 204 339 142 8 chr12 40728691 40728818 -103057637 + MIR SINE MIR 4 147 -115 198 299 154 36 chr12 40728984 40729205 -103057250 - L3b LINE CR1 -134 1449 1203 438 20 0 0 chr12 40730186 40730237 -103056218 + (CA)n Simple_repeat Simple_repeat 1 51 0 264 59 0 0 chr12 40730254 40730288 -103056167 + (GA)n Simple_repeat Simple_repeat 1 34 0 376 267 29 0 chr12 40730689 40730794 -103055661 - L2 LINE L2 -11 3302 3195 1810 188 10 0 chr12 40731024 40731333 -103055122 + AluJo SINE Alu 1 312 0 2103 118 3 29 chr12 40732055 40732368 -103054087 + AluSx SINE Alu 1 305 -7 264 30 0 0 chr12 40732383 40732416 -103054039 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 7672 18 1 1 chr12 40732416 40733971 -103052484 - L1PA3 LINE L1 -10 6145 4590 2357 122 14 0 chr12 40734037 40734398 -103052057 - L1PA16 LINE L1 -3 6163 5798 6749 176 18 12 chr12 40734525 40734794 -103051661 - L1PA16 LINE L1 -548 5618 5352 2228 67 24 7 chr12 40734794 40735092 -103051363 + AluY SINE Alu 1 303 -8 6749 176 18 12 chr12 40735092 40736556 -103049899 - L1PA16 LINE L1 -814 5352 3877 472 238 107 21 chr12 40736553 40736834 -103049621 - L1M4 LINE L1 -1736 4410 4106 * 521 59 0 0 chr12 40736882 40736950 -103049505 - AluS SINE Alu -245 68 1 1827 100 0 8 chr12 40736980 40737229 -103049226 + AluSg SINE Alu 38 284 -26 725 176 0 63 chr12 40738311 40738453 -103048002 + AluJo SINE Alu 1 133 -169 456 342 31 35 chr12 40739153 40739410 -103047045 - L3 LINE CR1 -374 1203 948 1590 161 72 10 chr12 40741028 40741320 -103045135 + AluJb SINE Alu 1 310 -2 256 138 0 35 chr12 40741320 40741378 -103045077 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 2004 152 0 0 chr12 40742144 40742459 -103043996 + AluSx SINE Alu 1 315 0 1595 160 90 54 chr12 40742614 40743128 -103043327 - MER67C LTR ERV1 -8 506 1 213 234 21 0 chr12 40743210 40743257 -103043198 + GA-rich Low_complexity Low_complexity 4 51 0 264 292 200 0 chr12 40743282 40743412 -103043043 - L2 LINE L2 -15 3257 3102 423 191 291 0 chr12 40743451 40743592 -103042863 - MIR SINE MIR -1 261 80 861 144 62 0 chr12 40743601 40743747 -103042708 + AluJo SINE Alu 141 295 -7 2211 70 3 45 chr12 40745803 40746149 -103040306 - AluSp SINE Alu 0 313 1 225 0 0 0 chr12 40746321 40746346 -103040109 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 390 276 102 70 chr12 40746523 40746872 -103039583 - L1ME3A LINE L1 -304 5866 5530 1966 161 23 7 chr12 40746872 40747177 -103039278 - AluJb SINE Alu -2 310 1 390 276 102 70 chr12 40747177 40747551 -103038904 - L1ME3A LINE L1 -640 5530 5106 2126 80 56 14 chr12 40797739 40798025 -102988430 - AluSg SINE Alu -11 299 2 258 292 67 25 chr12 40798419 40798539 -102987916 - MIR SINE MIR -1 261 137 186 200 0 0 chr12 40798749 40798779 -102987676 - MIR SINE MIR -65 143 114 2149 116 0 10 chr12 40799453 40799745 -102986710 + AluSx SINE Alu 18 306 -6 2111 132 0 7 chr12 40799745 40800055 -102986400 + AluSg SINE Alu 1 308 -2 3616 165 39 53 chr12 40800055 40800612 -102985843 + L1MD1 LINE L1 5443 5988 -254 2132 99 3 0 chr12 40800612 40800917 -102985538 + AluY SINE Alu 1 306 0 3616 165 39 53 chr12 40800917 40801150 -102985305 + L1MD1 LINE L1 5988 6223 -19 180 179 0 0 chr12 40802813 40802852 -102983603 + GA-rich Low_complexity Low_complexity 5 43 0 377 311 138 13 chr12 40806728 40806953 -102979502 - MIR SINE MIR 0 262 10 929 150 0 0 chr12 40807438 40807619 -102978836 + FLAM_C SINE Alu 1 181 0 432 236 0 0 chr12 40808214 40808303 -102978152 - L2 LINE L2 0 3313 3225 711 203 8 0 chr12 40808395 40808518 -102977937 + FLAM_A SINE Alu 1 124 -9 189 0 0 0 chr12 40808518 40808539 -102977916 + (GA)n Simple_repeat Simple_repeat 2 22 0 236 355 104 43 chr12 40809032 40809454 -102977001 - L2 LINE L2 -560 2754 2307 372 325 82 14 chr12 40809458 40809738 -102976717 - L2 LINE L2 -1122 2192 1894 687 174 9 9 chr12 40811040 40811155 -102975300 + FLAM_A SINE Alu 1 115 -18 2553 66 3 0 chr12 40811158 40811459 -102974996 - AluSp SINE Alu -11 302 1 274 207 17 0 chr12 40812791 40812849 -102973606 - MIR SINE MIR -2 260 202 1630 116 5 0 chr12 40815714 40815929 -102970526 - AluSx SINE Alu -96 216 1 1104 205 167 3 chr12 40815986 40816279 -102970176 + MER58B DNA MER1_type 1 341 0 255 299 22 52 chr12 40816295 40816429 -102970026 + L2 LINE L2 3134 3263 -9 230 269 0 26 chr12 40817441 40817519 -102968936 + G-rich Low_complexity Low_complexity 2 77 0 198 191 0 0 chr12 40817555 40817602 -102968853 + CT-rich Low_complexity Low_complexity 3 49 0 262 337 82 0 chr12 40817838 40817936 -102968519 - L2 LINE L2 -6 3266 3161 799 157 13 13 chr12 40818362 40818521 -102967934 + L1MC2 LINE L1 5139 5297 -849 2831 134 73 61 chr12 40818521 40819116 -102967339 + MER4B LTR ERV1 1 772 -7 4850 136 70 20 chr12 40819120 40820020 -102966435 + L1MC2 LINE L1 5291 6235 -109 1961 146 3 3 chr12 40820020 40820314 -102966141 + AluJb SINE Alu 1 294 -18 854 158 14 53 chr12 40820314 40820524 -102965931 + L1M1 LINE L1 5315 5522 -688 603 199 6 12 chr12 40820526 40820687 -102965768 + GA-rich Low_complexity Low_complexity 4 163 0 1633 164 23 7 chr12 40820687 40820992 -102965463 + L1M4 LINE L1 5477 5786 -392 950 81 0 8 chr12 40820997 40821121 -102965334 - MER4E LTR ERV1 -3 763 641 1244 199 107 57 chr12 40821122 40821544 -102964911 + LTR7 LTR ERV1 1 443 -7 655 146 0 69 chr12 40821573 40821703 -102964752 + HERVH LTR ERV1 339 459 -7254 9385 188 19 41 chr12 40821763 40824354 -102962101 + HERVH LTR ERV1 590 2992 -3622 5614 165 21 15 chr12 40824340 40825455 -102961000 + HERVH LTR ERV1 3140 4571 -2083 * 591 273 166 65 chr12 40826359 40826920 -102959535 + L2 LINE L2 2647 3267 -5 184 183 17 33 chr12 40826923 40826983 -102959472 + GA-rich Low_complexity Low_complexity 3 61 0 446 169 11 0 chr12 40827406 40827495 -102958960 + GA-rich Low_complexity Low_complexity 3 92 0 231 312 32 32 chr12 40827658 40827783 -102958672 + L2 LINE L2 3172 3296 -17 201 217 72 14 chr12 40827857 40827926 -102958529 + MIR3 SINE MIR 108 180 -28 299 179 15 0 chr12 40828395 40828462 -102957993 + CT-rich Low_complexity Low_complexity 2 69 0 201 74 0 0 chr12 40830069 40830096 -102956359 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 317 293 207 13 chr12 40830126 40830276 -102956179 + MIR3 SINE MIR 23 201 -7 297 0 0 0 chr12 40832495 40832528 -102953927 + (TC)n Simple_repeat Simple_repeat 2 34 0 2272 104 0 0 chr12 40832535 40832832 -102953623 - AluSg SINE Alu -13 297 1 24 0 0 0 chr12 40833273 40833297 -102953158 + AT_rich Low_complexity Low_complexity 1 24 0 294 265 60 8 chr12 40833386 40833492 -102952963 + MIR SINE MIR 9 117 -91 517 16 0 0 chr12 40833931 40833994 -102952461 - AluY SINE Alu -10 300 238 24 67 0 0 chr12 40834143 40834188 -102952267 + AT_rich Low_complexity Low_complexity 1 45 0 2271 103 3 22 chr12 40834307 40834618 -102951837 - AluSx SINE Alu -7 305 1 2305 101 0 0 chr12 40835470 40835757 -102950698 - AluSx SINE Alu -25 287 1 728 226 22 100 chr12 40835851 40836081 -102950374 - MIR SINE MIR -21 241 30 2276 114 0 13 chr12 40836096 40836412 -102950043 - AluSx SINE Alu 0 312 1 1762 139 40 15 chr12 40836952 40837226 -102949229 - AluSx SINE Alu -30 282 2 33 43 0 0 chr12 40837320 40837367 -102949088 + AT_rich Low_complexity Low_complexity 1 47 0 1695 179 0 19 chr12 40837403 40837721 -102948734 - AluJb SINE Alu 0 312 1 1552 188 0 46 chr12 40837920 40838100 -102948355 - AluJo SINE Alu -1 311 151 2418 87 7 0 chr12 40838100 40838398 -102948057 - AluSq SINE Alu -13 300 1 1552 188 0 46 chr12 40838398 40838541 -102947914 - AluJo SINE Alu -161 151 3 529 255 159 0 chr12 40839138 40839295 -102947160 + MER5A DNA MER1_type 7 188 -1 447 295 26 47 chr12 40839327 40839520 -102946935 - MER20B DNA MER1_type -591 192 4 25 0 0 0 chr12 40839755 40839780 -102946675 + AT_rich Low_complexity Low_complexity 1 25 0 740 183 0 8 chr12 40839811 40839937 -102946518 - FLAM_C SINE Alu -7 126 2 2469 68 7 0 chr12 40840005 40840300 -102946155 + AluSq SINE Alu 1 297 -16 2214 118 3 0 chr12 40841202 40841506 -102944949 - AluSx SINE Alu -7 305 1 31 26 0 0 chr12 40842037 40842075 -102944380 + AT_rich Low_complexity Low_complexity 1 38 0 2269 104 0 0 chr12 40842075 40842363 -102944092 - AluSx SINE Alu -24 288 1 1817 161 0 23 chr12 40842365 40842664 -102943791 - AluJo SINE Alu -16 296 5 1329 136 19 14 chr12 40842779 40842992 -102943463 - AluJb SINE Alu -12 300 87 846 213 48 117 chr12 40843084 40843177 -102943278 + MER46C DNA MER2_type 5 103 -235 2290 109 0 0 chr12 40843177 40843480 -102942975 + AluSx SINE Alu 1 303 -9 846 213 48 117 chr12 40843480 40843738 -102942717 + MER46C DNA MER2_type 103 332 -6 29 28 0 0 chr12 40844733 40844769 -102941686 + AT_rich Low_complexity Low_complexity 1 36 0 1801 148 4 7 chr12 40844797 40845075 -102941380 + AluJb SINE Alu 18 294 -18 2177 117 3 3 chr12 40845293 40845593 -102940862 - AluSx SINE Alu -12 300 1 329 273 180 0 chr12 40845619 40845780 -102940675 - L1ME4a LINE L1 -2 6119 5930 1675 179 7 29 chr12 40845857 40846165 -102940290 + AluJo SINE Alu 1 301 -11 2103 131 7 10 chr12 40848406 40848704 -102937751 + AluSx SINE Alu 1 297 -15 351 0 44 0 chr12 40849677 40849722 -102936733 + (TTTTG)n Simple_repeat Simple_repeat 4 180 0 1954 131 0 11 chr12 40849722 40850005 -102936450 - AluSg SINE Alu -1 324 1 394 318 63 33 chr12 40850197 40850572 -102935883 - L1MC4 LINE L1 -643 7399 7009 355 240 52 26 chr12 40850642 40850796 -102935659 - L1MC4 LINE L1 -1004 7038 6881 231 36 0 0 chr12 40851017 40851045 -102935410 + (T)n Simple_repeat Simple_repeat 1 28 0 2177 123 7 0 chr12 40852013 40852313 -102934142 + AluSx SINE Alu 1 302 -10 1731 140 11 7 chr12 40853567 40853846 -102932609 + AluJb SINE Alu 12 291 -21 231 232 281 18 chr12 40854210 40854359 -102932096 - MIR SINE MIR -52 210 40 2378 76 0 3 chr12 40854572 40854873 -102931582 + AluY SINE Alu 1 300 -11 2003 146 23 0 chr12 40854897 40855198 -102931257 + AluJo SINE Alu 1 308 -4 546 181 0 0 chr12 40855346 40855440 -102931015 - U6 snRNA snRNA -11 96 3 22 35 0 0 chr12 40855477 40855506 -102930949 + AT_rich Low_complexity Low_complexity 1 29 0 1002 182 56 0 chr12 40856421 40856619 -102929836 - MER3 DNA MER1_type 0 209 1 2182 108 0 0 chr12 40857246 40857543 -102928912 - AluY SINE Alu -14 297 1 1612 178 14 20 chr12 40857593 40857886 -102928569 - AluJb SINE Alu -14 298 8 1376 61 0 0 chr12 40858073 40858236 -102928219 + AluSg/x SINE Alu 134 296 -16 438 167 11 0 chr12 40858240 40858330 -102928125 + L1 LINE L1 4197 4287 -1859 304 277 96 0 chr12 40858345 40858428 -102928027 + L1MC4 LINE L1 6613 6703 -1339 4496 160 76 19 chr12 40858433 40859007 -102927448 + L1 LINE L1 4226 4766 -1380 1314 71 0 0 chr12 40859007 40859175 -102927280 + L1PA5 LINE L1 5984 6151 -3 4496 160 76 19 chr12 40859175 40859645 -102926810 + L1 LINE L1 4766 5329 -817 947 131 42 0 chr12 40859647 40859815 -102926640 + L1PA16 LINE L1 5865 6039 -127 2264 97 0 13 chr12 40859816 40860124 -102926331 + AluSc SINE Alu 1 304 -5 1814 110 0 26 chr12 40860133 40860397 -102926058 + AluSx SINE Alu 5 261 -51 917 48 0 0 chr12 40860398 40860501 -102925954 + AluY SINE Alu 67 169 -142 736 278 244 14 chr12 40860702 40861116 -102925339 + L2 LINE L2 2805 3313 0 1570 188 3 31 chr12 40861505 40861836 -102924619 - AluSx SINE Alu 0 323 1 1227 149 40 0 chr12 40862535 40862757 -102923698 + MER46A DNA MER2_type 6 236 0 225 294 15 0 chr12 40863736 40863804 -102922651 + CT-rich Low_complexity Low_complexity 2 70 0 972 98 84 107 chr12 40863834 40864049 -102922406 - Tigger7 DNA MER2_type 0 2491 2282 291 175 0 0 chr12 40864049 40864106 -102922349 - Tigger7 DNA MER2_type -293 440 384 1447 138 4 4 chr12 40864116 40864341 -102922114 - AluSg/x SINE Alu -3 309 85 1766 180 83 11 chr12 40864341 40864703 -102921752 - Tigger7 DNA MER2_type -2097 390 3 21 0 0 0 chr12 40865118 40865139 -102921316 + AT_rich Low_complexity Low_complexity 1 21 0 2372 77 0 0 chr12 40865140 40865427 -102921028 - AluSx SINE Alu -25 287 1 1811 160 40 13 chr12 40865651 40865951 -102920504 - AluJo SINE Alu -4 308 1 200 297 31 0 chr12 40865960 40866024 -102920431 + L2 LINE L2 2661 2726 -588 767 198 65 128 chr12 40866145 40866498 -102919957 - L2 LINE L2 -9 3304 2974 280 321 111 42 chr12 40866521 40866711 -102919744 + L2 LINE L2 2882 3084 -188 323 256 192 26 chr12 40866981 40867137 -102919318 + MIR SINE MIR 32 213 -49 328 343 39 17 chr12 40867390 40867568 -102918887 + L2 LINE L2 2828 3009 -263 2340 112 0 0 chr12 40867578 40867890 -102918565 - AluSx SINE Alu 0 312 1 304 240 10 96 chr12 40867991 40868095 -102918360 + L2 LINE L2 3219 3313 0 236 214 0 114 chr12 40868560 40868586 -102917869 - L2 LINE L2 0 3313 3286 2026 95 20 46 chr12 40868586 40868890 -102917565 + AluSx SINE Alu 1 296 -16 236 214 0 114 chr12 40868890 40868933 -102917522 - L2 LINE L2 -27 3286 3252 881 146 8 0 chr12 40868939 40869069 -102917386 - FLAM_C SINE Alu -2 131 1 191 225 0 25 chr12 40869073 40869113 -102917342 - MIR SINE MIR -154 54 16 2393 100 0 0 chr12 40869949 40870249 -102916206 + AluSx SINE Alu 1 300 -12 850 181 0 0 chr12 40870758 40870885 -102915570 + FLAM_C SINE Alu 1 127 -16 375 227 0 0 chr12 40871357 40871432 -102915023 + Tigger5 DNA MER2_type 2 76 -2247 320 218 0 0 chr12 40871441 40871496 -102914959 + Tigger5 DNA MER2_type 2267 2321 -2 2243 106 0 0 chr12 40871784 40872067 -102914388 + AluSx SINE Alu 1 283 -29 205 256 0 0 chr12 40873125 40873168 -102913287 + MER5A DNA MER1_type 7 49 -140 199 194 179 30 chr12 40873200 40873267 -102913188 - MER5B DNA MER1_type -101 77 1 21 0 0 0 chr12 40873555 40873576 -102912879 + AT_rich Low_complexity Low_complexity 1 21 0 573 289 72 24 chr12 40873896 40874104 -102912351 - MIR SINE MIR 0 262 45 189 256 0 0 chr12 40874963 40875002 -102911453 - L2 LINE L2 -89 3224 3186 1728 201 0 10 chr12 40875053 40875352 -102911103 + AluJo SINE Alu 1 296 -16 656 208 14 35 chr12 40876015 40876159 -102910296 + FRAM SINE Alu 2 142 -34 301 224 0 0 chr12 40876294 40876343 -102910112 + L3 LINE CR1 1518 1566 -11 478 264 75 6 chr12 40876493 40876667 -102909788 + L1MEc LINE L1 37 222 -6174 3888 240 112 23 chr12 40876711 40878435 -102908020 + L1MEc LINE L1 396 2272 -4124 471 97 70 70 chr12 40878438 40878515 -102907940 - MER33 DNA MER1_type -2261 363 284 2412 106 3 0 chr12 40878515 40878826 -102907629 + AluSx SINE Alu 1 312 0 471 97 70 70 chr12 40878826 40878862 -102907593 - MER33 DNA MER1_type -2339 285 250 1736 134 62 11 chr12 40878864 40879140 -102907315 + AluSx SINE Alu 1 290 -22 237 126 82 7 chr12 40879140 40879231 -102907224 + (TA)n Simple_repeat Simple_repeat 1 107 -38 2250 107 0 0 chr12 40879231 40879520 -102906935 + AluSx SINE Alu 1 289 -23 237 126 82 7 chr12 40879520 40879563 -102906892 + (TA)n Simple_repeat Simple_repeat 107 145 0 407 87 99 0 chr12 40879585 40879746 -102906709 + (TA)n Simple_repeat Simple_repeat 2 178 0 204 85 127 0 chr12 40879765 40879883 -102906572 + (TA)n Simple_repeat Simple_repeat 2 134 0 205 217 18 60 chr12 40880091 40880257 -102906198 + (TATAA)n Simple_repeat Simple_repeat 5 163 0 * 369 146 45 62 chr12 40880166 40880344 -102906111 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 21 0 0 0 chr12 40880360 40880381 -102906074 + AT_rich Low_complexity Low_complexity 1 21 0 396 124 72 28 chr12 40880381 40880778 -102905677 + (TA)n Simple_repeat Simple_repeat 1 414 0 729 176 123 34 chr12 40880793 40880997 -102905458 - MER33 DNA MER1_type -102 222 1 234 191 48 0 chr12 40881661 40881724 -102904731 + (TA)n Simple_repeat Simple_repeat 2 67 0 1211 206 116 30 chr12 40881727 40881777 -102904678 + L1MEc LINE L1 2245 2289 -3926 2281 107 0 0 chr12 40881777 40882076 -102904379 - AluSq SINE Alu -14 299 1 1211 206 116 30 chr12 40882076 40882432 -102904023 + L1MEc LINE L1 2289 2686 -3529 1910 152 13 19 chr12 40883080 40883390 -102903065 - AluJo SINE Alu -4 308 1 231 338 149 15 chr12 40887708 40887909 -102898546 + L3b LINE CR1 1273 1500 -83 546 259 36 7 chr12 40888826 40888965 -102897490 - MIR3 SINE MIR -38 170 28 300 70 0 0 chr12 40891700 40891743 -102894712 + (CA)n Simple_repeat Simple_repeat 2 44 0 387 105 0 0 chr12 40892178 40892235 -102894220 + (TA)n Simple_repeat Simple_repeat 1 57 0 231 239 0 0 chr12 40892915 40892982 -102893473 + CT-rich Low_complexity Low_complexity 2 68 0 224 322 56 11 chr12 40894823 40894913 -102891542 + L3 LINE CR1 1478 1571 -6 721 111 0 0 chr12 40895520 40895619 -102890836 + AluJ/FLAM SINE Alu 1 99 -213 22 0 0 0 chr12 40895620 40895642 -102890813 + AT_rich Low_complexity Low_complexity 1 22 0 244 138 0 77 chr12 40896357 40896422 -102890033 + (TCTCTG)n Simple_repeat Simple_repeat 3 62 0 492 294 15 0 chr12 40897287 40897423 -102889032 + L2 LINE L2 2820 2957 -356 1100 118 210 0 chr12 40897523 40897718 -102888737 - MER46A DNA MER2_type 0 236 1 694 246 56 18 chr12 40897999 40898217 -102888238 - MIR SINE MIR -1 261 40 295 154 0 19 chr12 40899979 40900031 -102886424 - L2 LINE L2 0 3313 3263 200 292 0 0 chr12 40900455 40900503 -102885952 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 406 287 57 0 chr12 40901887 40902009 -102884446 + MIR SINE MIR 19 147 -61 499 243 192 51 chr12 40902477 40902691 -102883764 - MIR SINE MIR 0 262 19 24 32 0 0 chr12 40903289 40903320 -102883135 + AT_rich Low_complexity Low_complexity 1 31 0 358 309 81 15 chr12 40904229 40904365 -102882090 + MIR SINE MIR 6 150 -112 298 297 11 11 chr12 40905142 40905233 -102881222 - MIR3 SINE MIR 0 208 118 260 237 107 61 chr12 40905309 40905440 -102881015 - L3 LINE CR1 -95 1482 1346 313 267 61 53 chr12 40905613 40905744 -102880711 + MIR SINE MIR 25 156 -106 399 354 6 24 chr12 40905889 40906053 -102880402 - MIR SINE MIR -78 184 24 220 293 24 0 chr12 40907134 40907216 -102879239 - MIR SINE MIR -5 257 174 241 229 66 0 chr12 40907264 40907325 -102879130 - L2 LINE L2 -22 3291 3227 293 213 43 9 chr12 40907367 40907469 -102878986 - MIR SINE MIR -63 145 89 2499 74 0 0 chr12 40908080 40908376 -102878079 - AluSc SINE Alu -13 296 1 191 344 120 16 chr12 40908490 40908615 -102877840 + MIR SINE MIR 105 242 -20 461 291 0 33 chr12 40909891 40910042 -102876413 - MIR SINE MIR -71 191 46 249 347 113 33 chr12 40911350 40911563 -102874892 - MIR SINE MIR -12 250 21 2025 125 42 0 chr12 40912145 40912433 -102874022 + AluSx SINE Alu 6 305 -7 619 178 6 77 chr12 40913979 40914148 -102872307 - L1MC5 LINE L1 -73 7888 7732 231 125 0 0 chr12 40914940 40914980 -102871475 + (T)n Simple_repeat Simple_repeat 1 40 0 1933 139 0 0 chr12 40915299 40915565 -102870890 - AluSx SINE Alu -46 266 1 475 318 108 47 chr12 40915565 40915861 -102870594 + L1MC4a LINE L1 4892 5205 -941 2385 97 0 3 chr12 40915866 40916174 -102870281 + AluSq SINE Alu 1 307 -6 1203 254 72 84 chr12 40916236 40916914 -102869541 + L1MC4a LINE L1 5267 5936 -1872 1864 167 7 10 chr12 40917083 40917382 -102869073 - AluJo SINE Alu -14 298 1 26 0 0 0 chr12 40917418 40917444 -102869011 + AT_rich Low_complexity Low_complexity 1 26 0 212 296 0 0 chr12 40917867 40917921 -102868534 + GA-rich Low_complexity Low_complexity 1 54 0 180 273 55 64 chr12 40918465 40918575 -102867880 + MIR3 SINE MIR 12 120 -88 993 165 10 5 chr12 40918582 40918776 -102867679 + MER96B DNA MER1_type? 42 236 -181 220 352 0 11 chr12 40918782 40918873 -102867582 + MIR3 SINE MIR 117 206 -2 863 197 17 17 chr12 40920247 40920425 -102866030 - MER5B DNA MER1_type 0 178 1 482 133 9 115 chr12 40920490 40920535 -102865920 - MER5A DNA MER1_type -80 109 61 2386 87 0 10 chr12 40920535 40920834 -102865621 - AluSg SINE Alu -14 296 1 482 133 9 115 chr12 40920834 40920901 -102865554 - MER5A DNA MER1_type -128 61 9 747 245 39 15 chr12 40920914 40921118 -102865337 - MER3 DNA MER1_type 0 209 1 436 321 8 8 chr12 40921979 40922113 -102864342 - MIR SINE MIR -59 149 16 842 150 0 0 chr12 40922415 40922548 -102863907 + FLAM_C SINE Alu 1 133 0 1905 143 9 40 chr12 40923228 40923550 -102862905 - AluJo SINE Alu 0 312 1 529 301 33 0 chr12 40924337 40924520 -102861935 - MIR SINE MIR -3 259 71 2433 55 28 7 chr12 40924622 40924913 -102861542 - AluSp SINE Alu -16 297 1 195 246 115 0 chr12 40925446 40925507 -102860948 + L2 LINE L2 3205 3272 0 292 203 0 0 chr12 40926549 40926608 -102859847 - MER5A DNA MER1_type -118 71 13 219 69 0 0 chr12 40926739 40926768 -102859687 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 224 111 0 67 chr12 40927596 40927641 -102858814 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 713 52 21 0 chr12 40928393 40928490 -102857965 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 1975 128 25 0 chr12 40928492 40928766 -102857689 - AluSx SINE Alu -27 285 5 25 0 0 0 chr12 40929709 40929734 -102856721 + AT_rich Low_complexity Low_complexity 1 25 0 318 50 0 0 chr12 40933239 40933279 -102853176 + (TG)n Simple_repeat Simple_repeat 2 41 0 182 178 22 22 chr12 40933908 40933953 -102852502 - MER5B DNA MER1_type -13 165 121 207 261 31 0 chr12 40936380 40936445 -102850010 + CT-rich Low_complexity Low_complexity 2 68 0 21 0 0 0 chr12 40939684 40939705 -102846750 + AT_rich Low_complexity Low_complexity 1 21 0 270 227 68 23 chr12 40943732 40943820 -102842635 - MIR SINE MIR -28 234 143 436 271 16 8 chr12 40944175 40944297 -102842158 - MIR SINE MIR -43 219 97 2116 112 13 20 chr12 40946274 40946577 -102839878 + AluSx SINE Alu 1 301 -11 341 323 89 50 chr12 40964574 40965007 -102821448 + L1MCa LINE L1 1906 6292 -109 * 348 275 0 22 chr12 40964989 40965080 -102821375 - L1MC4 LINE L1 -1340 6702 6614 203 245 0 19 chr12 40966308 40966361 -102820094 + L2 LINE L2 3262 3313 0 267 200 18 0 chr12 40968099 40968154 -102818301 - L2 LINE L2 -8 3305 3250 1231 174 19 14 chr12 40968656 40968868 -102817587 + MER20 DNA MER1_type 7 219 0 407 357 70 0 chr12 40971511 40971668 -102814787 + MIR3 SINE MIR 34 201 -7 3250 168 31 72 chr12 40973353 40974072 -102812383 + LTR8 LTR ERV1 3 691 0 2136 99 0 0 chr12 40974361 40974675 -102811780 - AluSx SINE Alu 0 314 1 397 192 90 130 chr12 40975074 40975251 -102811204 + MER39 LTR ERV1 1 170 -474 719 156 0 0 chr12 40975253 40975362 -102811093 - AluJo SINE Alu -13 299 191 904 78 14 57 chr12 40975362 40975503 -102810952 + MER4B LTR ERV1 1 135 -475 2546 114 8 31 chr12 40975507 40976105 -102810350 + MER4A LTR ERV1 1 655 -9 1143 180 0 0 chr12 40976116 40976310 -102810145 - AluJo SINE Alu -118 194 1 824 201 36 27 chr12 40976331 40976569 -102809886 + LTR29 LTR ERV1 185 608 -179 1730 138 235 0 chr12 40976575 40976915 -102809540 - MSTA LTR MaLR -8 420 1 9690 117 11 64 chr12 40976915 40977038 -102809417 - MSTA-int LTR MaLR 0 1580 1452 4310 75 4 12 chr12 40977038 40977154 -102809301 - MER41A LTR ERV1 0 554 438 2158 83 0 0 chr12 40977154 40977431 -102809024 + AluY SINE Alu 35 311 0 4310 75 4 12 chr12 40977431 40977873 -102808582 - MER41A LTR ERV1 -116 438 1 9690 117 11 64 chr12 40977873 40978066 -102808389 - MSTA-int LTR MaLR -128 1452 1250 1602 170 3 48 chr12 40978066 40978377 -102808078 - AluJb SINE Alu -15 297 1 9690 117 11 64 chr12 40978377 40979163 -102807292 - MSTA-int LTR MaLR -330 1250 591 2006 123 0 0 chr12 40979163 40979440 -102807015 - AluSq SINE Alu -35 278 2 9690 117 11 64 chr12 40979440 40980000 -102806455 - MSTA-int LTR MaLR -989 591 3 1722 135 239 9 chr12 40980002 40980349 -102806106 - MSTA LTR MaLR 0 428 2 487 143 32 117 chr12 40980349 40980503 -102805952 + LTR49 LTR ERV1 419 559 -36 1889 163 33 84 chr12 40980511 40981055 -102805400 + LTR49-int LTR ERV1 1 1425 -4521 249 195 0 0 chr12 40981060 40981101 -102805354 + LTR48B LTR ERV1 604 644 0 1055 244 77 34 chr12 40981133 40981575 -102804880 + MLT1J LTR MaLR 44 504 -7 209 256 0 0 chr12 40982216 40982259 -102804196 + L2 LINE L2 3265 3307 -6 2615 162 18 11 chr12 40983522 40983980 -102802475 + LTR32 LTR ERVL 11 471 0 21 0 0 0 chr12 40984729 40984750 -102801705 + AT_rich Low_complexity Low_complexity 1 21 0 219 69 0 0 chr12 40985807 40985836 -102800619 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 516 271 5 85 chr12 40985837 40986025 -102800430 - MIR SINE MIR -13 249 77 364 272 150 40 chr12 40986551 40986724 -102799731 + L2 LINE L2 3077 3268 -4 852 166 0 14 chr12 40987019 40987164 -102799291 + FAM SINE Alu 16 158 -27 306 0 0 0 chr12 40987166 40987200 -102799255 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 206 203 6 6 chr12 40987439 40987495 -102798960 - MIR SINE MIR -76 132 96 184 327 19 37 chr12 40987991 40988098 -102798357 + L2 LINE L2 2951 3055 -217 763 233 35 120 chr12 40988206 40988298 -102798157 + MIR SINE MIR 4 102 -160 1718 142 3 31 chr12 40988298 40988587 -102797868 + AluJb SINE Alu 1 281 -31 763 233 35 120 chr12 40988587 40988777 -102797678 + MIR SINE MIR 102 262 0 186 243 0 54 chr12 40988867 40988941 -102797514 + L2 LINE L2 3201 3270 -2 318 317 75 44 chr12 40990806 40991014 -102795441 - L1ME3A LINE L1 0 6170 5955 469 270 142 0 chr12 40991029 40991177 -102795278 - MIR SINE MIR -36 226 58 239 345 12 0 chr12 41041195 41041279 -102745176 - L1ME3A LINE L1 -485 5636 5552 2475 88 0 13 chr12 41041520 41041827 -102744628 + AluSx SINE Alu 1 303 -9 516 288 77 18 chr12 41041870 41042092 -102744363 + MIR SINE MIR 4 238 -24 991 134 5 62 chr12 41042668 41042862 -102743593 - MLT1D LTR MaLR 0 505 323 1517 105 0 59 chr12 41042864 41043150 -102743305 - AluSx SINE Alu -15 297 29 274 149 0 0 chr12 41045414 41045461 -102740994 - FLAM SINE Alu -27 106 60 1067 145 42 5 chr12 41046297 41046490 -102739965 - AluY SINE Alu -30 281 82 268 99 70 0 chr12 41049314 41049385 -102737070 + (TA)n Simple_repeat Simple_repeat 1 76 0 198 0 0 0 chr12 41049880 41049902 -102736553 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 199 173 39 39 chr12 41050487 41050539 -102735916 + MIR SINE MIR 72 123 -139 221 169 34 34 chr12 41050549 41050608 -102735847 - MIR SINE MIR -77 131 73 1711 186 12 6 chr12 41050654 41050993 -102735462 - L1MA5 LINE L1 0 6300 5960 185 219 0 24 chr12 41050995 41051036 -102735419 + MIR3 SINE MIR 117 156 -52 2607 90 3 0 chr12 41051380 41051734 -102734721 + THE1A LTR MaLR 1 355 0 285 243 54 0 chr12 41052218 41052292 -102734163 + MER91B DNA MER1_type 56 133 -57 2371 92 0 32 chr12 41052366 41052682 -102733773 - AluSq SINE Alu -7 306 1 511 340 94 4 chr12 41052765 41053021 -102733434 + L3 LINE CR1 1288 1566 -11 968 159 13 0 chr12 41053862 41054013 -102732442 + FRAM SINE Alu 11 163 -13 187 233 33 67 chr12 41054043 41054103 -102732352 - L3 LINE CR1 -2 1575 1518 308 314 189 6 chr12 41055027 41055202 -102731253 + MIR SINE MIR 29 235 -27 495 336 76 9 chr12 41055246 41055457 -102730998 + MIR SINE MIR 28 252 -10 231 114 0 0 chr12 41056059 41056103 -102730352 + (TG)n Simple_repeat Simple_repeat 2 45 0 1781 158 47 99 chr12 41058205 41058699 -102727756 - L1PA16 LINE L1 0 6166 5699 289 141 50 0 chr12 41058793 41058892 -102727563 + (TA)n Simple_repeat Simple_repeat 2 105 0 523 113 0 0 chr12 41058953 41059033 -102727422 + MADE1 DNA Mariner 1 80 0 234 247 14 41 chr12 41059263 41059336 -102727119 + MIR SINE MIR 127 197 -65 188 229 49 16 chr12 41060337 41060398 -102726057 - MIR SINE MIR -190 72 10 817 151 0 0 chr12 41062482 41062608 -102723847 - FLAM_C SINE Alu -7 126 1 240 86 0 0 chr12 41063457 41063492 -102722963 + (CA)n Simple_repeat Simple_repeat 2 36 0 2183 200 35 11 chr12 41063492 41064070 -102722385 - MER82 DNA MER2_type -2 651 2 185 296 45 45 chr12 41064255 41064343 -102722112 - L2 LINE L2 -28 3285 3198 475 236 103 46 chr12 41065962 41065982 -102720473 + MIR SINE MIR 6 23 -239 1763 158 29 45 chr12 41065982 41066051 -102720404 - THE1C LTR MaLR 0 375 306 2725 23 7 3 chr12 41066051 41066360 -102720095 + AluY SINE Alu 1 310 -1 1763 158 29 45 chr12 41066360 41066671 -102719784 - THE1C LTR MaLR -69 306 1 475 236 103 46 chr12 41066671 41066845 -102719610 + MIR SINE MIR 23 211 -51 415 221 184 0 chr12 41067376 41067512 -102718943 - MIR SINE MIR -14 248 88 195 42 0 0 chr12 41067779 41067803 -102718652 + (TG)n Simple_repeat Simple_repeat 1 24 0 421 287 98 67 chr12 41067812 41067947 -102718508 - L1MC4a LINE L1 -1908 5900 5771 2229 129 3 3 chr12 41067947 41068433 -102718022 + AluSx SINE Alu 1 312 0 421 287 98 67 chr12 41068433 41068625 -102717830 - L1MC4a LINE L1 -2037 5771 5563 701 210 0 0 chr12 41068757 41068900 -102717555 - L1MA9 LINE L1 0 6312 6170 1841 176 0 19 chr12 41069791 41070103 -102716352 - AluJb SINE Alu -6 306 1 2644 56 0 0 chr12 41070152 41070457 -102715998 - AluY SINE Alu -6 305 1 210 366 12 0 chr12 41071642 41071724 -102714731 + MIR3 SINE MIR 111 193 -15 198 0 0 0 chr12 41072280 41072302 -102714153 + (CA)n Simple_repeat Simple_repeat 1 22 0 2308 132 0 0 chr12 41072328 41072638 -102713817 - AluSg SINE Alu 0 310 1 2032 138 0 21 chr12 41072685 41073004 -102713451 - AluSx SINE Alu 0 313 1 2274 72 43 0 chr12 41073317 41073596 -102712859 + AluY SINE Alu 1 291 -20 2473 63 7 10 chr12 41073697 41073997 -102712458 + AluY SINE Alu 1 299 -12 1868 165 0 13 chr12 41074003 41074312 -102712143 + AluJo SINE Alu 5 309 -3 323 236 34 34 chr12 41076417 41076506 -102709949 - MIR SINE MIR -84 124 36 277 302 109 40 chr12 41077134 41077336 -102709119 - MIR SINE MIR -16 246 31 323 185 46 0 chr12 41077628 41077693 -102708762 + L2 LINE L2 3205 3272 0 984 259 4 17 chr12 41078565 41078804 -102707651 + MIR SINE MIR 1 236 -26 2192 118 6 10 chr12 41079446 41079759 -102706696 + AluSx SINE Alu 1 312 0 778 81 16 16 chr12 41079760 41079884 -102706571 + (GGAA)n Simple_repeat Simple_repeat 2 125 0 186 296 0 0 chr12 41079902 41079956 -102706499 - L2 LINE L2 -86 3227 3174 204 346 57 64 chr12 41080061 41080359 -102706096 - L2 LINE L2 -163 3109 2814 235 258 247 0 chr12 41081510 41081603 -102704852 - MIR SINE MIR -6 256 141 201 39 0 0 chr12 41081614 41081640 -102704815 + (CA)n Simple_repeat Simple_repeat 2 27 0 355 281 75 50 chr12 41081659 41081819 -102704636 - MIR3 SINE MIR -29 179 16 210 286 43 23 chr12 41082743 41082850 -102703605 - MIR SINE MIR -92 116 10 568 298 130 19 chr12 41083064 41083604 -102702851 - L1ME4a LINE L1 -138 5983 5384 2289 106 0 16 chr12 41084167 41084340 -102702115 - AluSx SINE Alu -5 307 133 288 0 0 0 chr12 41084340 41084372 -102702083 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2188 113 0 0 chr12 41084372 41084664 -102701791 - AluSg SINE Alu -18 292 1 2289 106 0 16 chr12 41084664 41084801 -102701654 - AluSx SINE Alu -177 135 1 332 225 50 0 chr12 41084808 41084888 -102701567 + MER5A DNA MER1_type 55 138 -51 199 278 17 78 chr12 41084936 41085051 -102701404 - MIR3 SINE MIR -50 158 51 1960 142 10 17 chr12 41085288 41085590 -102700865 + AluJo SINE Alu 1 300 -12 1253 109 12 0 chr12 41085774 41085939 -102700516 - AluSp SINE Alu -13 300 134 2203 116 3 10 chr12 41085939 41086241 -102700214 - AluSq SINE Alu -13 300 1 2513 63 10 3 chr12 41086245 41086548 -102699907 - AluY SINE Alu -6 305 1 552 270 120 63 chr12 41089267 41089561 -102696894 + L1ME4a LINE L1 5672 5999 -122 2130 112 10 13 chr12 41089561 41089873 -102696582 + AluSx SINE Alu 2 312 0 552 270 120 63 chr12 41089873 41090004 -102696451 + L1ME4a LINE L1 5999 6121 0 209 240 20 0 chr12 41090046 41090096 -102696359 + L3 LINE CR1 1126 1176 -401 2504 90 3 0 chr12 41090846 41091156 -102695299 + AluSx SINE Alu 1 311 -1 1778 185 0 32 chr12 41091381 41091523 -102694932 + AluJo SINE Alu 1 146 -166 2331 65 0 11 chr12 41091523 41091802 -102694653 + AluY SINE Alu 14 289 -22 1778 185 0 32 chr12 41091802 41091972 -102694483 + AluJo SINE Alu 146 303 -9 1042 191 0 0 chr12 41091972 41092134 -102694321 + FRAM SINE Alu 1 159 -17 619 299 80 36 chr12 41094036 41094401 -102692054 - L2 LINE L2 0 3313 2933 194 315 11 22 chr12 41094479 41094568 -102691887 - L2 LINE L2 -508 2806 2719 199 272 161 0 chr12 41096858 41096939 -102689516 - MIR SINE MIR -56 152 59 2125 91 14 47 chr12 41096940 41097237 -102689218 + AluSp SINE Alu 1 287 -26 357 336 7 29 chr12 41098101 41098241 -102688214 - MIR SINE MIR 0 262 126 528 252 161 0 chr12 41099187 41099342 -102687113 - MER3 DNA MER1_type 0 209 30 2299 105 0 0 chr12 41099368 41099664 -102686791 - AluSx SINE Alu 0 312 17 231 179 0 0 chr12 41099664 41099703 -102686752 - MER3 DNA MER1_type -170 39 1 1167 252 24 45 chr12 41100389 41100722 -102685733 - LTR16A LTR ERVL 0 450 125 282 293 61 10 chr12 41101342 41101441 -102685014 - L2 LINE L2 -47 3225 3122 804 219 70 5 chr12 41101504 41101705 -102684750 + MIR SINE MIR 41 254 -8 1877 176 43 14 chr12 41102412 41102827 -102683628 - Charlie1b DNA MER1_type 0 523 97 402 21 0 0 chr12 41102989 41103036 -102683419 + (TG)n Simple_repeat Simple_repeat 1 47 0 1500 148 65 47 chr12 41103057 41103334 -102683121 - AluJo SINE Alu -30 282 1 437 276 214 8 chr12 41103343 41103600 -102682855 - L3 LINE CR1 -731 846 537 1819 174 0 19 chr12 41104160 41104471 -102681984 + AluJb SINE Alu 1 305 -7 333 325 58 0 chr12 41105180 41105300 -102681155 + MIR SINE MIR 13 139 -123 454 326 124 13 chr12 41105365 41105598 -102680857 + MIR SINE MIR 4 262 0 282 219 0 0 chr12 41106531 41106595 -102679860 + (CA)n Simple_repeat Simple_repeat 2 65 0 363 310 31 70 chr12 41107913 41108200 -102678255 - L1ME4a LINE L1 -294 5827 5552 2154 103 30 0 chr12 41108441 41108741 -102677714 + AluSx SINE Alu 1 309 -3 298 304 151 42 chr12 41108778 41109163 -102677292 + L2 LINE L2 1986 2412 -902 1804 132 28 19 chr12 41109527 41109846 -102676609 + MER33 DNA MER1_type 2 323 -1 561 284 77 18 chr12 41111269 41111491 -102674964 - MIR SINE MIR -24 238 4 2118 136 0 0 chr12 41111530 41111831 -102674624 - AluSx SINE Alu -5 307 7 2257 97 0 7 chr12 41111866 41112165 -102674290 + AluSq SINE Alu 1 297 -16 304 281 22 0 chr12 41112560 41112649 -102673806 + L2 LINE L2 3218 3308 -5 441 294 27 7 chr12 41113197 41113343 -102673112 + MIR3 SINE MIR 11 159 -49 300 288 108 65 chr12 41113344 41113483 -102672972 - MER5A DNA MER1_type 0 189 45 2059 119 37 0 chr12 41113484 41113779 -102672676 - AluSx SINE Alu -6 306 1 203 88 29 0 chr12 41113940 41113974 -102672481 + (TTA)n Simple_repeat Simple_repeat 2 36 0 472 235 15 23 chr12 41114575 41114707 -102671748 - MIR3 SINE MIR 0 208 78 189 0 0 0 chr12 41114802 41114823 -102671632 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 455 291 126 6 chr12 41114937 41115112 -102671343 - MIR SINE MIR -55 207 12 373 289 278 5 chr12 41115821 41116008 -102670447 + MIR SINE MIR 24 261 -1 766 152 0 34 chr12 41116010 41116188 -102670267 + CT-rich Low_complexity Low_complexity 1 172 0 304 65 22 0 chr12 41116531 41116577 -102669878 + L2 LINE L2 3267 3313 0 288 320 179 0 chr12 41116577 41116733 -102669722 + MIR SINE MIR 63 246 -16 205 290 48 16 chr12 41117875 41117937 -102668518 - L2 LINE L2 -185 3087 3024 303 93 0 0 chr12 41117958 41118001 -102668454 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 241 288 0 38 chr12 41118965 41119045 -102667410 + G-rich Low_complexity Low_complexity 4 80 0 21 36 0 0 chr12 41119864 41119892 -102666563 + GC_rich Low_complexity Low_complexity 1 28 0 269 190 27 76 chr12 41119966 41120150 -102666305 + (CCCGG)n Simple_repeat Simple_repeat 1 175 0 213 216 0 59 chr12 41121594 41121645 -102664810 + MIR SINE MIR 101 148 -60 284 264 24 57 chr12 41121978 41122114 -102664341 - MIR3 SINE MIR -86 122 6 475 212 18 166 chr12 41123447 41123520 -102662935 + MER5A DNA MER1_type 5 87 -102 2240 81 20 3 chr12 41123520 41123818 -102662637 + AluSx SINE Alu 1 303 -9 475 212 18 166 chr12 41123818 41123837 -102662618 + MER5A DNA MER1_type 87 107 -82 1683 138 12 0 chr12 41123837 41124091 -102662364 + AluSx SINE Alu 37 293 -19 475 212 18 166 chr12 41124091 41124214 -102662241 + MER5A DNA MER1_type 107 189 0 303 345 35 7 chr12 41124216 41124361 -102662094 - MIR3 SINE MIR -50 158 10 664 263 44 77 chr12 41124597 41124894 -102661561 - L2 LINE L2 -3 3310 3024 626 323 73 1 chr12 41127052 41127299 -102659156 + MIR SINE MIR 1 262 0 436 273 196 14 chr12 41128054 41128274 -102658181 - L1ME4a LINE L1 -11 6110 5851 462 61 0 0 chr12 41128841 41128907 -102657548 + (GA)n Simple_repeat Simple_repeat 1 66 0 606 225 22 73 chr12 41129349 41129466 -102656989 + MIR SINE MIR 46 153 -109 2172 125 3 0 chr12 41129466 41129777 -102656678 + AluSx SINE Alu 1 312 0 606 225 22 73 chr12 41129777 41129837 -102656618 + MIR SINE MIR 153 214 -48 2152 122 0 0 chr12 41129841 41130145 -102656310 + AluSx SINE Alu 1 304 -8 195 290 0 48 chr12 41130180 41130242 -102656213 + MIR SINE MIR 204 262 0 29 0 0 0 chr12 41130242 41130271 -102656184 + AT_rich Low_complexity Low_complexity 1 29 0 989 265 8 8 chr12 41132155 41132389 -102654066 + MIR SINE MIR 4 237 -25 2175 132 0 0 chr12 41132472 41132782 -102653673 + AluSx SINE Alu 1 310 -2 2043 111 3 40 chr12 41132993 41133317 -102653138 - AluSx SINE Alu 0 312 1 289 365 73 7 chr12 41133317 41133454 -102653001 - MIR SINE MIR -96 166 21 298 294 108 0 chr12 41133911 41134013 -102652442 + MIR3 SINE MIR 61 173 -35 1250 176 92 0 chr12 41134365 41134439 -102652016 + AluJo SINE Alu 36 102 -210 183 114 0 0 chr12 41134439 41134474 -102651981 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 1250 176 92 0 chr12 41134474 41134649 -102651806 + AluJo SINE Alu 102 308 -4 186 380 76 0 chr12 41135258 41135350 -102651105 + MIR SINE MIR 25 123 -85 194 377 26 0 chr12 41136122 41136199 -102650256 - L2 LINE L2 -213 3059 2981 223 343 37 46 chr12 41137761 41137869 -102648586 - MIR SINE MIR 0 262 156 181 282 13 51 chr12 41138292 41138370 -102648085 - L2 LINE L2 0 3272 3198 510 323 95 36 chr12 41138370 41138707 -102647748 - L2 LINE L2 0 3272 2916 207 321 104 0 chr12 41139293 41139399 -102647056 - MIR3 SINE MIR -3 205 89 304 277 77 19 chr12 41139441 41139587 -102646868 + MIR3 SINE MIR 58 215 -47 209 300 75 0 chr12 41140538 41140618 -102645837 + MIR SINE MIR 114 199 -63 369 0 0 0 chr12 41141815 41141856 -102644599 + (CA)n Simple_repeat Simple_repeat 1 41 0 396 294 184 6 chr12 41142790 41142953 -102643502 + MER91A DNA MER1_type 2 193 -3 2315 103 0 0 chr12 41142988 41143289 -102643166 + AluSx SINE Alu 1 301 -11 282 125 0 0 chr12 41145116 41145164 -102641291 + (CA)n Simple_repeat Simple_repeat 1 48 0 1908 172 29 96 chr12 41145353 41145771 -102640684 - MLT1B LTR MaLR 0 390 1 295 317 30 10 chr12 41146503 41146604 -102639851 - MIR SINE MIR -65 143 41 456 233 136 13 chr12 41146649 41146877 -102639578 - L1ME4a LINE L1 -7 6114 5859 244 319 165 5 chr12 41146916 41147104 -102639351 - L1ME4a LINE L1 -315 5806 5589 239 114 23 0 chr12 41149201 41149245 -102637210 + CT-rich Low_complexity Low_complexity 1 45 0 317 321 47 9 chr12 41150548 41150654 -102635801 + MIR SINE MIR 105 214 -48 468 244 225 19 chr12 41150774 41150987 -102635468 - MIR SINE MIR 0 262 6 358 306 20 0 chr12 41151729 41151827 -102634628 + MIR3 SINE MIR 66 165 -43 183 162 0 0 chr12 41152704 41152741 -102633714 + (CA)n Simple_repeat Simple_repeat 1 37 0 372 292 18 18 chr12 41153533 41153646 -102632809 + MIR3 SINE MIR 9 121 -87 238 159 29 0 chr12 41156819 41156888 -102629567 + (TG)n Simple_repeat Simple_repeat 2 72 0 246 273 209 36 chr12 41157333 41157472 -102628983 + MIR3 SINE MIR 34 196 -12 2366 106 0 0 chr12 41158845 41159157 -102627298 + AluSx SINE Alu 1 312 0 1520 102 130 11 chr12 41159729 41160014 -102626441 - MER1B DNA MER1_type -4 335 17 363 335 80 0 chr12 41160279 41160455 -102626000 - MIR SINE MIR -20 242 53 816 216 158 23 chr12 41160716 41161131 -102625324 + Charlie1 DNA MER1_type 36 2751 -10 247 304 51 0 chr12 41162717 41162796 -102623659 + MIR3 SINE MIR 112 194 -14 248 318 58 48 chr12 41164528 41164717 -102621738 - MIR3 SINE MIR -7 201 11 663 263 17 28 chr12 41165248 41165427 -102621028 + MIR SINE MIR 78 254 -8 267 31 0 0 chr12 41165870 41165902 -102620553 + (TG)n Simple_repeat Simple_repeat 2 33 0 27 49 0 0 chr12 41166215 41166256 -102620199 + GC_rich Low_complexity Low_complexity 1 41 0 42 71 0 0 chr12 41166505 41166589 -102619866 + GC_rich Low_complexity Low_complexity 1 84 0 242 324 0 49 chr12 41166635 41166737 -102619718 + MER5A DNA MER1_type 50 146 -43 25 51 0 0 chr12 41166787 41166826 -102619629 + AT_rich Low_complexity Low_complexity 1 39 0 1698 151 7 28 chr12 41167024 41167315 -102619140 - AluJo SINE Alu -19 293 9 1114 141 40 60 chr12 41167568 41167764 -102618691 - MLT1D LTR MaLR 0 505 307 2293 87 0 3 chr12 41167764 41168062 -102618393 - AluSx SINE Alu -15 297 1 1114 141 40 60 chr12 41168062 41168299 -102618156 - MLT1D LTR MaLR -198 307 1 435 271 93 0 chr12 41168299 41168417 -102618038 + L2 LINE L2 3185 3313 0 184 263 20 61 chr12 41168525 41168624 -102617831 + MER5B DNA MER1_type 13 107 -71 262 339 97 10 chr12 41168764 41168956 -102617499 - L2 LINE L2 -276 2996 2782 433 283 188 0 chr12 41169077 41169215 -102617240 + MIR SINE MIR 91 254 -8 789 171 6 0 chr12 41169670 41169828 -102616627 + MER3 DNA MER1_type 9 167 -42 265 165 0 63 chr12 41169847 41169926 -102616529 + MER3 DNA MER1_type 132 205 -4 248 290 40 60 chr12 41169942 41170042 -102616413 + MIR SINE MIR 123 220 -42 572 257 143 50 chr12 41170460 41170760 -102615695 + MLT1J1 LTR MaLR 25 352 -94 1960 60 4 0 chr12 41220764 41220998 -102565457 + AluY SINE Alu 63 297 -14 427 272 110 7 chr12 41222387 41222523 -102563932 + MIR SINE MIR 20 169 -93 372 317 5 43 chr12 41222577 41222763 -102563692 - MIR SINE MIR 0 262 84 707 215 73 49 chr12 41222870 41223075 -102563380 + MER63A DNA MER1_type 1 210 0 820 120 24 0 chr12 41223376 41223501 -102562954 - MLT-int LTR MaLR -120 1615 1488 2299 128 22 35 chr12 41223506 41223874 -102562581 - THE1B LTR MaLR 0 364 2 12251 102 5 4 chr12 41223875 41225453 -102561002 - THE1B-int LTR MaLR 0 1580 1 2399 117 19 35 chr12 41225455 41225823 -102560632 - THE1B LTR MaLR -2 362 1 1506 156 3 62 chr12 41225977 41226265 -102560190 + MLT-int LTR MaLR 1317 1587 -148 928 177 86 65 chr12 41226265 41226497 -102559958 + LTR8A LTR ERV1 489 725 -2 335 219 0 0 chr12 41226587 41226651 -102559804 - MLT-int LTR MaLR -993 742 679 3091 175 128 7 chr12 41226775 41227385 -102559070 - MLT1A2-int LTR MaLR -1050 685 2 1596 171 42 66 chr12 41227385 41227594 -102558861 - MLT1A2 LTR MaLR -2 372 175 2408 89 0 6 chr12 41227594 41227908 -102558547 - AluSq SINE Alu -1 312 1 1596 171 42 66 chr12 41227908 41228078 -102558377 - MLT1A2 LTR MaLR -199 175 2 224 313 100 44 chr12 41228548 41228708 -102557747 + L2 LINE L2 2562 2730 -584 330 331 12 38 chr12 41228885 41229045 -102557410 + L2 LINE L2 3158 3313 0 310 360 15 22 chr12 41229058 41229194 -102557261 + L2 LINE L2 2925 3059 -213 324 0 0 0 chr12 41229207 41229243 -102557212 + (CA)n Simple_repeat Simple_repeat 1 36 0 498 274 206 16 chr12 41229437 41229689 -102556766 + MLT1J2 LTR MaLR 151 450 0 302 267 86 26 chr12 41229731 41229847 -102556608 + L2 LINE L2 3136 3258 -14 705 210 81 27 chr12 41230450 41230636 -102555819 - MLT1A2 LTR MaLR 0 374 179 2767 155 14 2 chr12 41230706 41231132 -102555323 + MSTB1 LTR MaLR 2 432 0 7374 196 83 4 chr12 41231133 41232578 -102553877 + MSTB1-int LTR MaLR 2 1560 -91 299 200 0 0 chr12 41232592 41232642 -102553813 - MLT1A2 LTR MaLR -346 50 1 2466 236 78 0 chr12 41232642 41233181 -102553274 - MLT1A2-int LTR MaLR 0 1735 1155 2288 196 39 83 chr12 41233176 41233741 -102552714 - MLT1A2-int LTR MaLR -841 894 355 * 1018 212 27 46 chr12 41233741 41234000 -102552455 - MLT1A1 LTR MaLR -98 267 14 333 156 294 28 chr12 41235817 41235926 -102550529 + MER53 DNA DNA 51 188 -1 231 309 25 25 chr12 41235929 41236010 -102550445 - MIR SINE MIR -111 97 17 1715 142 158 28 chr12 41237738 41238061 -102548394 + MLT1A1 LTR MaLR 1 365 0 543 264 138 17 chr12 41239860 41240091 -102546364 - MIR SINE MIR 0 262 4 920 269 95 81 chr12 41240135 41240607 -102545848 - L2 LINE L2 0 3313 2835 209 312 0 65 chr12 41240637 41240730 -102545725 + L2 LINE L2 3186 3272 0 261 0 0 0 chr12 41240960 41240989 -102545466 + (TG)n Simple_repeat Simple_repeat 2 30 0 1139 172 0 47 chr12 41241540 41241755 -102544700 + AluJo SINE Alu 87 291 -21 309 295 164 22 chr12 41241844 41242027 -102544428 + MIR SINE MIR 34 242 -20 30725 113 16 59 chr12 41242566 41249006 -102537449 + L1PA8 LINE L1 12 6163 -9 55 0 0 0 chr12 41249025 41249080 -102537375 + AT_rich Low_complexity Low_complexity 1 55 0 320 308 25 138 chr12 41249138 41249538 -102536917 + L2 LINE L2 2914 3268 -4 232 351 44 0 chr12 41249550 41249664 -102536791 + MIR SINE MIR 93 211 -51 1120 318 80 21 chr12 41249767 41250494 -102535961 - L2 LINE L2 -78 3235 2461 1722 178 53 28 chr12 41250504 41250756 -102535699 - MLT1A1 LTR MaLR 0 365 100 2594 126 59 5 chr12 41250756 41251162 -102535293 - MSTA LTR MaLR 0 428 1 1722 178 53 28 chr12 41251162 41251264 -102535191 - MLT1A1 LTR MaLR -265 100 2 216 0 0 0 chr12 41251369 41251393 -102535062 + (TG)n Simple_repeat Simple_repeat 2 25 0 229 65 0 0 chr12 41251401 41251447 -102535008 - LTR66 LTR ERVL -171 439 394 257 98 0 0 chr12 41251493 41251534 -102534921 - LTR66 LTR ERVL -172 438 398 247 273 23 23 chr12 41251534 41251622 -102534833 - L1MC4 LINE L1 -1339 6703 6616 231 267 0 0 chr12 41251639 41251714 -102534741 + (TA)n Simple_repeat Simple_repeat 2 76 0 238 143 0 0 chr12 41251716 41251758 -102534697 - LTR66 LTR ERVL -171 439 398 206 260 0 0 chr12 41251758 41251808 -102534647 + (TA)n Simple_repeat Simple_repeat 2 51 0 226 167 0 0 chr12 41251810 41251852 -102534603 - LTR66 LTR ERVL -171 439 398 192 179 0 0 chr12 41251859 41251898 -102534557 + (TA)n Simple_repeat Simple_repeat 1 39 0 227 191 0 0 chr12 41251898 41251940 -102534515 - LTR66 LTR ERVL -171 439 398 251 289 0 11 chr12 41251967 41252057 -102534398 - L1MC4 LINE L1 -1340 6702 6614 226 318 0 0 chr12 41252066 41252154 -102534301 - L1MC4 LINE L1 -1344 6698 6611 * 254 247 22 22 chr12 41252121 41252210 -102534245 - L1MC4 LINE L1 -1339 6703 6615 385 173 8 31 chr12 41252211 41252338 -102534117 + (TA)n Simple_repeat Simple_repeat 2 125 0 236 153 34 34 chr12 41252361 41252420 -102534035 + L1MC3 LINE L1 6588 6646 -1139 336 287 0 0 chr12 41252423 41252552 -102533903 + (TA)n Simple_repeat Simple_repeat 1 129 0 240 337 0 0 chr12 41252575 41252664 -102533791 + L1MC4 LINE L1 6614 6702 -1340 467 252 6 0 chr12 41252673 41252832 -102533623 + (TA)n Simple_repeat Simple_repeat 2 161 0 225 231 31 0 chr12 41252834 41252899 -102533556 - L1MC3 LINE L1 -1131 6654 6588 * 253 294 47 0 chr12 41252842 41252927 -102533528 + L1MC4 LINE L1 6614 6702 -1340 225 191 0 0 chr12 41252950 41252992 -102533463 + LTR66 LTR ERVL 398 439 -171 526 356 0 6 chr12 41252997 41253177 -102533278 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 228 348 0 11 chr12 41253203 41253295 -102533160 + L1MC4 LINE L1 6613 6703 -1339 252 317 0 0 chr12 41253299 41253422 -102533033 + (TA)n Simple_repeat Simple_repeat 1 123 0 1251 153 38 46 chr12 41254324 41254586 -102531869 - AluJo SINE Alu -52 260 1 1915 146 3 3 chr12 41254627 41254935 -102531520 + AluSq SINE Alu 1 308 -5 345 241 76 93 chr12 41255056 41255357 -102531098 - L1MC5 LINE L1 -249 7712 7418 2668 143 33 21 chr12 41255357 41255778 -102530677 + MSTA LTR MaLR 1 426 -2 345 241 76 93 chr12 41255778 41255886 -102530569 - L1MC5 LINE L1 -543 7418 7310 541 211 110 41 chr12 41255988 41256206 -102530249 - L1MC4 LINE L1 -704 7338 7106 806 123 9 9 chr12 41256220 41256334 -102530121 + AluSg1 SINE Alu 2 115 -194 1401 260 12 2 chr12 41256434 41256841 -102529614 - L1P LINE L1 -2598 3548 3138 389 249 17 23 chr12 41256846 41257019 -102529436 + CT-rich Low_complexity Low_complexity 2 173 0 1586 279 27 13 chr12 41257024 41257086 -102529369 - L1 LINE L1 -2946 3200 3140 1545 165 6 88 chr12 41257086 41257425 -102529030 - AluJo SINE Alu -1 311 1 1586 279 27 13 chr12 41257425 41257999 -102528456 - L1 LINE L1 -3006 3140 2555 363 317 87 12 chr12 41258308 41258469 -102527986 - MIR SINE MIR -37 225 53 192 374 45 13 chr12 41258742 41258897 -102527558 + MIR SINE MIR 47 206 -56 2380 76 0 3 chr12 41259120 41259424 -102527031 + AluY SINE Alu 1 303 -8 270 130 58 43 chr12 41260271 41260340 -102526115 - MLT1K LTR MaLR -8 580 511 1849 167 0 19 chr12 41260365 41260683 -102525772 + AluJo SINE Alu 1 312 0 287 290 39 68 chr12 41260883 41261090 -102525365 - MLT1L LTR MaLR -372 243 43 1532 282 156 50 chr12 41261217 41263058 -102523397 + L2 LINE L2 1202 3252 -61 1710 164 131 27 chr12 41263058 41263508 -102522947 + LTR54B LTR ERV1 1 497 -1 1532 282 156 50 chr12 41263508 41263571 -102522884 + L2 LINE L2 3252 3307 -6 335 294 70 108 chr12 41263671 41264099 -102522356 - L2 LINE L2 -1 3271 2860 499 283 96 0 chr12 41264158 41264293 -102522162 - MIR SINE MIR -8 254 97 3984 99 67 5 chr12 41264293 41264891 -102521564 - MER41B LTR ERV1 0 635 1 499 283 96 0 chr12 41264891 41264932 -102521523 - MIR SINE MIR -165 97 61 258 290 39 77 chr12 41264952 41265091 -102521364 + MIR SINE MIR 64 194 -68 2086 129 14 0 chr12 41265091 41265386 -102521069 + AluSx SINE Alu 1 299 -13 258 290 39 77 chr12 41265386 41265453 -102521002 + MIR SINE MIR 194 262 0 241 186 0 0 chr12 41265876 41265919 -102520536 + (TA)n Simple_repeat Simple_repeat 2 44 0 765 307 39 13 chr12 41265956 41266344 -102520111 - L1MC4a LINE L1 -1911 5897 5500 320 127 0 0 chr12 41266399 41266454 -102520001 - Tigger7 DNA MER2_type -2364 123 69 * 359 191 15 0 chr12 41266451 41266519 -102519936 + Tigger7 DNA MER2_type 25 93 -640 267 246 16 0 chr12 41266512 41266573 -102519882 - Tigger7 DNA MER2_type -268 71 10 * 440 286 133 31 chr12 41266680 41266935 -102519520 - L1MC4a LINE L1 -760 5386 5106 1969 154 0 0 chr12 41267130 41267443 -102519012 - AluJb SINE Alu 0 313 1 344 235 25 34 chr12 41267576 41267695 -102518760 - L1MC4a LINE L1 -1439 4707 4590 228 277 68 40 chr12 41267756 41267904 -102518551 - MLT1I LTR MaLR -2 407 256 288 287 11 11 chr12 41268014 41268108 -102518347 + MLT1I LTR MaLR 116 209 -200 261 196 0 0 chr12 41268725 41268781 -102517674 + (CATA)n Simple_repeat Simple_repeat 2 57 0 710 283 39 0 chr12 41270105 41270335 -102516120 + L2 LINE L2 1271 1509 -1805 917 217 5 5 chr12 41270358 41270556 -102515899 + MER3 DNA MER1_type 8 205 -4 259 207 17 0 chr12 41270507 41270565 -102515890 - MER3 DNA MER1_type -108 101 43 * 460 229 84 28 chr12 41270568 41270747 -102515708 - L2 LINE L2 -1524 1790 1602 4901 138 9 1 chr12 41270750 41271555 -102514900 + L1PA15 LINE L1 5348 6158 -7 234 0 0 0 chr12 41271558 41271584 -102514871 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr12 41271591 41271614 -102514841 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 668 181 216 0 chr12 41271688 41271859 -102514596 - MER3 DNA MER1_type -1 208 1 2917 248 102 33 chr12 41271925 41272032 -102514423 - HAL1 LINE L1 -10 2497 2399 2281 83 0 23 chr12 41272032 41272333 -102514122 - AluY SINE Alu -17 294 1 2917 248 102 33 chr12 41272333 41273281 -102513174 - HAL1 LINE L1 -108 2399 1323 2214 113 0 3 chr12 41273281 41273582 -102512873 - AluSx SINE Alu -12 300 1 2917 248 102 33 chr12 41273582 41273892 -102512563 - HAL1 LINE L1 -1184 1323 1036 588 254 175 21 chr12 41273926 41274257 -102512198 - HAL1 LINE L1 -2123 384 3 547 237 65 27 chr12 41274261 41274447 -102512008 + L2 LINE L2 1822 2014 -1300 189 0 0 0 chr12 41274463 41274484 -102511971 + (TC)n Simple_repeat Simple_repeat 2 22 0 557 180 49 0 chr12 41274502 41274624 -102511831 - L1ME2 LINE L1 -1 6163 6036 742 197 53 90 chr12 41274624 41274782 -102511673 + L2 LINE L2 2067 2214 -1100 968 209 141 0 chr12 41274782 41275065 -102511390 + MER33 DNA MER1_type 1 323 -1 742 197 53 90 chr12 41275065 41275150 -102511305 + L2 LINE L2 2214 2301 -1013 2323 114 14 11 chr12 41275150 41275511 -102510944 + L1PA16 LINE L1 5804 6165 -1 2676 70 0 53 chr12 41275576 41275975 -102510480 + MLT2A1 LTR ERVL 5 382 -62 258 106 0 0 chr12 41275975 41276022 -102510433 + (TA)n Simple_repeat Simple_repeat 2 48 0 746 69 0 0 chr12 41276022 41276124 -102510331 - MLT2A2 LTR ERVL -347 106 5 581 101 9 37 chr12 41276186 41276284 -102510171 - L1PA16 LINE L1 0 6166 6070 259 24 0 48 chr12 41276284 41276326 -102510129 + (TA)n Simple_repeat Simple_repeat 2 41 0 286 0 0 0 chr12 41276336 41276369 -102510086 + MLT2A1 LTR ERVL 421 453 0 1202 310 85 19 chr12 41276383 41276958 -102509497 + L2 LINE L2 2288 2900 -414 1898 180 0 0 chr12 41276962 41277267 -102509188 - AluJb SINE Alu -7 305 1 1371 135 5 0 chr12 41277429 41277637 -102508818 - MER2 DNA MER2_type -135 210 2 502 116 0 32 chr12 41278229 41278324 -102508131 + (TTCC)n Simple_repeat Simple_repeat 2 93 0 286 237 53 53 chr12 41278620 41278696 -102507759 - L2 LINE L2 0 3272 3197 630 204 21 0 chr12 41278700 41278842 -102507613 + MLT2B1 LTR ERVL 3 147 -373 352 141 24 82 chr12 41279217 41279302 -102507153 - MSTC LTR MaLR -1 427 348 696 151 144 0 chr12 41279302 41279441 -102507014 + MER46A DNA MER2_type 1 159 -77 241 333 0 38 chr12 41279763 41279868 -102506587 - MIR SINE MIR -63 145 45 369 271 119 30 chr12 41280352 41280578 -102505877 - MIR SINE MIR -7 255 10 1564 98 18 27 chr12 41280669 41280893 -102505562 + AluSg/x SINE Alu 73 294 -16 452 195 102 16 chr12 41281367 41281495 -102504960 - MER58A DNA MER1_type 0 139 1 833 202 35 21 chr12 41281768 41282076 -102504379 - MLT1A1 LTR MaLR -11 363 1 2314 109 3 0 chr12 41282539 41282841 -102503614 + AluSx SINE Alu 1 303 -9 2049 151 0 3 chr12 41282844 41283142 -102503313 + AluJb SINE Alu 1 297 -15 573 198 10 0 chr12 41283145 41283246 -102503209 + AluJo/FRAM SINE Alu 181 282 -30 31 0 0 0 chr12 41283253 41283284 -102503171 + AT_rich Low_complexity Low_complexity 1 31 0 420 257 203 31 chr12 41283526 41283738 -102502717 - MIR SINE MIR 0 262 9 791 207 62 6 chr12 41283738 41283917 -102502538 + MER5A DNA MER1_type 1 189 0 1528 97 0 0 chr12 41284600 41284796 -102501659 + AluSg SINE Alu 2 197 -113 811 125 0 0 chr12 41284847 41284959 -102501496 - AluSp/q SINE Alu -5 308 197 3087 140 24 25 chr12 41284959 41285707 -102500748 - L1MA4 LINE L1 -11 6289 5459 2346 88 0 10 chr12 41285913 41286218 -102500237 + AluSc SINE Alu 1 302 -7 381 245 10 0 chr12 41286700 41286798 -102499657 - L1ME1 LINE L1 -14 6152 6054 252 227 0 0 chr12 41286792 41286858 -102499597 - L1MEc LINE L1 -4335 2061 1996 * 744 247 71 37 chr12 41286975 41287327 -102499128 - L1MEc LINE L1 -4507 1889 1526 6268 41 0 0 chr12 41287353 41288101 -102498354 - L1PA5 LINE L1 -3 6151 5404 1353 109 0 4 chr12 41288101 41288341 -102498114 + L1M LINE L1 5193 5428 -755 23 33 0 0 chr12 41289297 41289327 -102497128 + AT_rich Low_complexity Low_complexity 1 30 0 383 337 18 30 chr12 41290226 41290395 -102496060 + MIR SINE MIR 29 195 -67 239 53 0 26 chr12 41290406 41290444 -102496011 + (TAA)n Simple_repeat Simple_repeat 2 38 0 949 261 54 0 chr12 41290445 41290686 -102495769 - MIR SINE MIR -8 254 1 334 258 72 10 chr12 41290698 41290795 -102495660 - MIR SINE MIR 0 262 160 1353 204 6 50 chr12 41290839 41291157 -102495298 + L1MD1 LINE L1 15 318 -6222 632 198 0 9 chr12 41291165 41291281 -102495174 + FLAM_C SINE Alu 1 115 -28 339 25 0 0 chr12 41291281 41291321 -102495134 + (GA)n Simple_repeat Simple_repeat 2 41 0 7384 191 63 70 chr12 41291321 41291974 -102494481 + L1MD1 LINE L1 317 973 -5567 243 0 0 0 chr12 41291974 41292001 -102494454 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7384 191 63 70 chr12 41292001 41292397 -102494058 + L1MD1 LINE L1 973 1370 -5170 230 0 33 0 chr12 41292397 41292427 -102494028 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 7384 191 63 70 chr12 41292427 41293311 -102493144 + L1MD1 LINE L1 1370 2224 -4316 2179 130 0 0 chr12 41293311 41293604 -102492851 + AluSx SINE Alu 1 293 -19 7384 191 63 70 chr12 41293604 41294464 -102491991 + L1MD1 LINE L1 2224 3089 -3451 859 136 0 8 chr12 41294471 41294603 -102491852 - THE1B LTR MaLR 0 364 234 2132 118 0 0 chr12 41294607 41294887 -102491568 - AluSx SINE Alu -2 310 31 295 100 0 0 chr12 41294911 41294951 -102491504 + Alu SINE Alu 2 41 -261 1421 94 0 5 chr12 41295003 41295204 -102491251 - THE1B LTR MaLR -164 200 1 360 179 60 0 chr12 41295308 41295375 -102491080 + FLAM SINE Alu 48 118 -15 769 254 17 27 chr12 41295398 41295492 -102490963 + L1MD1 LINE L1 3233 3326 -3214 2436 72 3 0 chr12 41295492 41295785 -102490670 + AluY SINE Alu 1 294 -17 769 254 17 27 chr12 41295785 41295985 -102490470 + L1MD1 LINE L1 3326 3524 -3016 5422 127 195 91 chr12 41295994 41297530 -102488925 - pTR5 LTR ERV1 0 2438 744 2158 255 14 4 chr12 41297530 41298235 -102488220 + L1MD1 LINE L1 3520 4231 -2309 2240 60 0 35 chr12 41298293 41298509 -102487946 - L1PB1 LINE L1 -43 6108 5905 2414 71 0 0 chr12 41298509 41298805 -102487650 - AluY SINE Alu -15 296 1 2240 60 0 35 chr12 41298805 41298907 -102487548 - L1PB1 LINE L1 -246 5905 5801 * 4617 208 25 22 chr12 41298890 41299484 -102486971 + L1MD1 LINE L1 4198 4789 -1847 2118 142 3 0 chr12 41299484 41299793 -102486662 + AluSg SINE Alu 1 310 0 4617 208 25 22 chr12 41299793 41300557 -102485898 + L1MD1 LINE L1 4789 5549 -1087 2224 97 3 0 chr12 41300557 41300845 -102485610 + AluSg SINE Alu 1 289 -21 4617 208 25 22 chr12 41300845 41301730 -102484725 + L1MD1 LINE L1 5549 6449 -187 933 172 0 0 chr12 41301741 41301886 -102484569 + AluJb SINE Alu 145 289 -23 2496 113 35 0 chr12 41301956 41302329 -102484126 + L1PA11 LINE L1 5788 6173 -1 25 0 0 0 chr12 41303058 41303083 -102483372 + AT_rich Low_complexity Low_complexity 1 25 0 2098 137 0 0 chr12 41303087 41303396 -102483059 - AluSx SINE Alu 0 309 1 1571 190 21 14 chr12 41303398 41303687 -102482768 - AluJo SINE Alu -19 293 3 287 206 56 24 chr12 41303857 41303983 -102482472 + (TA)n Simple_repeat Simple_repeat 2 131 0 1753 152 22 4 chr12 41304511 41304788 -102481667 - AluJo SINE Alu -30 282 1 222 195 0 0 chr12 41304972 41305013 -102481442 + CT-rich Low_complexity Low_complexity 2 42 0 1698 93 0 52 chr12 41305039 41305287 -102481168 + AluSx SINE Alu 57 291 -21 265 287 23 23 chr12 41305808 41305895 -102480560 + MIR3 SINE MIR 74 160 -48 33 25 0 0 chr12 41306470 41306510 -102479945 + AT_rich Low_complexity Low_complexity 1 40 0 405 118 0 0 chr12 41307038 41307106 -102479349 - MSTB LTR MaLR 0 432 365 2187 96 7 10 chr12 41307122 41307423 -102479032 - AluSx SINE Alu -11 301 2 1189 129 16 5 chr12 41307424 41307618 -102478837 - MSTB LTR MaLR -230 196 1 4511 107 15 21 chr12 41308046 41308570 -102477885 - L1MA5 LINE L1 -2 6298 5779 2366 78 0 0 chr12 41308570 41308854 -102477601 - AluSc SINE Alu -13 296 13 4511 107 15 21 chr12 41308854 41309074 -102477381 - L1MA5 LINE L1 -521 5779 5559 418 250 16 23 chr12 41309091 41309219 -102477236 - HAL1 LINE L1 -1773 734 608 737 226 108 66 chr12 41309380 41309645 -102476810 + HAL1 LINE L1 1083 1370 -1137 1826 133 16 44 chr12 41309645 41309836 -102476619 + AluSx SINE Alu 3 183 -129 2087 120 14 14 chr12 41309836 41310128 -102476327 - AluSx SINE Alu -18 294 3 1826 133 16 44 chr12 41310128 41310253 -102476202 + AluSx SINE Alu 183 310 -2 737 226 108 66 chr12 41310253 41310367 -102476088 + HAL1 LINE L1 1370 1478 -1029 1019 231 28 63 chr12 41311296 41311694 -102474761 - MLT1H LTR MaLR 0 549 104 2195 114 3 3 chr12 41311694 41312000 -102474455 - AluSx SINE Alu -6 306 1 1019 231 28 63 chr12 41312000 41312033 -102474422 - MLT1H LTR MaLR -445 104 71 181 245 94 38 chr12 41312377 41312430 -102474025 + L2 LINE L2 3215 3270 -2 1925 141 23 23 chr12 41312489 41312793 -102473662 - AluJo SINE Alu -8 304 1 2142 119 0 0 chr12 41313136 41313448 -102473007 + AluSx SINE Alu 1 312 0 1562 95 0 0 chr12 41314320 41314546 -102471909 - AluSg/x SINE Alu 0 310 85 336 44 89 0 chr12 41314890 41314935 -102471520 - LTR47A LTR ERVL -403 49 1 24 0 0 0 chr12 41315278 41315302 -102471153 + AT_rich Low_complexity Low_complexity 1 24 0 999 189 0 35 chr12 41315590 41315791 -102470664 + AluJb SINE Alu 87 280 -32 196 53 53 0 chr12 41315794 41315832 -102470623 + A-rich Low_complexity Low_complexity 1 40 0 2683 180 33 8 chr12 41315921 41316442 -102470013 + L1MB4 LINE L1 5637 6170 -10 1462 137 4 13 chr12 41316787 41317014 -102469441 + AluJb SINE Alu 88 312 0 333 0 0 0 chr12 41317652 41317689 -102468766 + (CA)n Simple_repeat Simple_repeat 1 37 0 522 291 87 5 chr12 41318186 41318382 -102468073 - L2 LINE L2 -11 3302 3091 48 67 0 0 chr12 41318382 41318472 -102467983 + AT_rich Low_complexity Low_complexity 1 90 0 413 204 19 29 chr12 41318511 41318614 -102467841 - MER97a DNA MER1_type? 0 894 793 1624 189 133 76 chr12 41318628 41318663 -102467792 + MLT1E LTR MaLR 5 37 -556 2184 150 129 5 chr12 41318663 41319044 -102467411 + MSTA LTR MaLR 1 428 0 1624 189 133 76 chr12 41319044 41319226 -102467229 + MLT1E LTR MaLR 37 207 -386 1504 186 45 4 chr12 41319226 41319490 -102466965 - AluJb SINE Alu -37 275 1 1624 189 133 76 chr12 41319490 41319759 -102466696 + MLT1E LTR MaLR 207 520 -73 5416 192 53 51 chr12 41319759 41320752 -102465703 - L1 LINE L1 -2920 3408 2418 2056 134 0 3 chr12 41320752 41321051 -102465404 - AluSx SINE Alu -14 298 1 5416 192 53 51 chr12 41321051 41322690 -102463765 - L1 LINE L1 -3910 2418 772 2801 185 28 6 chr12 41322720 41323227 -102463228 - L1 LINE L1 -4618 710 193 4624 80 78 153 chr12 41323227 41324119 -102462336 - LTR12 LTR ERV1 0 826 1 839 202 45 49 chr12 41324300 41324587 -102461868 - pTR5 LTR ERV1 -1410 1028 743 1141 141 49 0 chr12 41324587 41324772 -102461683 - L1 LINE L1 -5132 196 3 379 209 55 11 chr12 41324772 41324863 -102461592 + MLT1E LTR MaLR 498 592 -1 3733 143 52 66 chr12 41324864 41325641 -102460814 + LTR1 LTR ERV1 19 784 -1 31 26 0 0 chr12 41325734 41325772 -102460683 + AT_rich Low_complexity Low_complexity 1 38 0 2211 106 0 14 chr12 41325772 41326065 -102460390 + AluSq SINE Alu 1 289 -24 189 0 0 0 chr12 41326072 41326093 -102460362 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 22 70 0 0 chr12 41326106 41326149 -102460306 + AT_rich Low_complexity Low_complexity 1 43 0 1574 230 22 54 chr12 41326327 41326732 -102459723 - MER97a DNA MER1_type? -416 478 87 580 298 136 16 chr12 41326775 41327033 -102459422 - L2 LINE L2 -205 3108 2820 813 201 6 41 chr12 41327036 41327205 -102459250 + AluJo SINE Alu 1 163 -149 263 239 80 94 chr12 41327311 41327449 -102459006 + MIR SINE MIR 77 212 -50 1870 228 44 57 chr12 41327499 41328048 -102458407 - MER34 LTR ERV1 0 542 1 1813 184 29 86 chr12 41328758 41329246 -102457209 + LTR8 LTR ERV1 117 576 -115 2179 114 3 0 chr12 41329247 41329545 -102456910 + AluSp SINE Alu 1 299 -14 23 33 0 0 chr12 41329661 41329691 -102456764 + AT_rich Low_complexity Low_complexity 1 30 0 2397 62 3 3 chr12 41329691 41329983 -102456472 - AluY SINE Alu -19 292 1 820 163 0 44 chr12 41330047 41330182 -102456273 + FLAM_A SINE Alu 2 130 -3 1778 134 13 37 chr12 41330264 41330562 -102455893 - AluSx SINE Alu -21 291 1 23 0 0 0 chr12 41330573 41330596 -102455859 + AT_rich Low_complexity Low_complexity 1 23 0 376 182 16 25 chr12 41330919 41331040 -102455415 + CT-rich Low_complexity Low_complexity 1 120 0 4216 227 71 50 chr12 41331501 41332863 -102453592 + L1MDb LINE L1 783 2116 -4290 2182 128 0 3 chr12 41332863 41333159 -102453296 + AluSx SINE Alu 1 295 -17 2108 136 3 3 chr12 41333162 41333471 -102452984 + AluSg SINE Alu 1 309 -1 4216 227 71 50 chr12 41333471 41333732 -102452723 + L1MDb LINE L1 2117 2427 -3979 1048 239 37 14 chr12 41333732 41333950 -102452505 - MER58A DNA MER1_type -1 223 1 4216 227 71 50 chr12 41333950 41334085 -102452370 + L1MDb LINE L1 2427 2558 -3848 2220 84 16 9 chr12 41334087 41334486 -102451969 - LTR7 LTR ERV1 -2 448 1 1210 201 70 53 chr12 41334486 41334860 -102451595 + L1MDb LINE L1 2554 2933 -3473 589 103 31 21 chr12 41334901 41334998 -102451457 + MER4A LTR ERV1 1 98 -566 1779 121 20 38 chr12 41334998 41335352 -102451103 + MER4A LTR ERV1 261 664 0 384 272 0 0 chr12 41335357 41335449 -102451006 + L1MDb LINE L1 4037 4128 -2278 * 1144 164 54 110 chr12 41335448 41335820 -102450635 + L1M4 LINE L1 2683 3033 -3113 2018 132 90 15 chr12 41335822 41336156 -102450299 + L1PA16 LINE L1 5804 6162 -4 230 168 119 69 chr12 41336202 41336303 -102450152 + L1ME4a LINE L1 5910 6015 -106 * 926 251 56 34 chr12 41336298 41336493 -102449962 + L1M4 LINE L1 3024 3213 -2933 1677 113 0 4 chr12 41336493 41336754 -102449701 - AluSg SINE Alu 0 319 60 926 251 56 34 chr12 41336754 41336970 -102449485 + L1M4 LINE L1 3213 3446 -2700 457 214 24 56 chr12 41337005 41337028 -102449427 - MLT2B1 LTR ERVL -34 486 464 1923 199 93 35 chr12 41337028 41337491 -102448964 - LTR2B LTR ERV1 0 490 1 457 214 24 56 chr12 41337491 41337593 -102448862 - MLT2B1 LTR ERVL -56 464 365 1916 84 105 28 chr12 41337639 41337925 -102448530 - AluY SINE Alu -3 308 1 384 283 144 0 chr12 41337998 41338171 -102448284 + L1ME3 LINE L1 5965 6162 0 2311 100 0 3 chr12 41338280 41338589 -102447866 - AluY SINE Alu -3 308 1 22 56 0 0 chr12 41339250 41339286 -102447169 + AT_rich Low_complexity Low_complexity 1 36 0 1885 71 34 58 chr12 41339403 41339697 -102446758 + L1MA3 LINE L1 6014 6300 -5 2424 65 3 3 chr12 41339747 41340054 -102446401 + AluY SINE Alu 1 307 -4 1561 176 0 11 chr12 41340176 41340438 -102446017 + AluJo SINE Alu 36 294 -18 208 228 13 20 chr12 41340480 41340629 -102445826 + (TA)n Simple_repeat Simple_repeat 1 148 0 538 226 57 31 chr12 41340635 41340794 -102445661 - L2 LINE L2 -26 3287 3125 1703 185 0 7 chr12 41340814 41341106 -102445349 + AluJb SINE Alu 1 290 -22 1546 224 171 58 chr12 41341268 41341635 -102444820 - L2 LINE L2 -273 3040 2716 1693 178 0 22 chr12 41341635 41341950 -102444505 + AluJo SINE Alu 5 312 0 1546 224 171 58 chr12 41341950 41342252 -102444203 - L2 LINE L2 -597 2716 2295 1619 219 32 19 chr12 41342296 41342360 -102444095 + MLT1C LTR MaLR 89 151 -316 2282 97 3 3 chr12 41342360 41342660 -102443795 - AluSq SINE Alu -13 300 1 1619 219 32 19 chr12 41342660 41342969 -102443486 + MLT1C LTR MaLR 151 467 0 774 244 44 89 chr12 41342969 41343180 -102443275 - L2 LINE L2 -1015 2299 2105 2459 78 0 3 chr12 41343180 41343488 -102442967 + AluY SINE Alu 1 307 -4 774 244 44 89 chr12 41343488 41343591 -102442864 - L2 LINE L2 -1209 2105 1999 695 179 16 108 chr12 41343591 41343853 -102442602 - MER51A LTR ERV1 -47 587 346 473 264 121 21 chr12 41343990 41344229 -102442226 - L2 LINE L2 -1492 1822 1560 1374 162 38 11 chr12 41344231 41344497 -102441958 + MER33 DNA MER1_type 1 273 -51 2148 115 3 22 chr12 41344503 41344816 -102441639 - AluSx SINE Alu -5 307 1 1577 145 6 76 chr12 41344819 41345136 -102441319 - AluJb SINE Alu -9 303 9 229 276 0 0 chr12 41345136 41345194 -102441261 + MER33 DNA MER1_type 262 319 -5 552 242 103 24 chr12 41345213 41345378 -102441077 - L2 LINE L2 -1763 1551 1374 285 328 101 8 chr12 41345387 41345625 -102440830 - L1M4 LINE L1 -1146 5000 4741 3018 134 71 4 chr12 41345792 41346270 -102440185 - L1PA16 LINE L1 -9 6157 5648 1473 150 0 21 chr12 41346270 41346510 -102439945 - MER4E LTR ERV1 -1 778 544 1129 254 108 40 chr12 41346499 41346897 -102439558 - MER77 LTR ERV1 -6 599 175 * 2249 111 0 0 chr12 41347130 41347428 -102439027 - AluSx SINE Alu -14 298 1 181 208 125 0 chr12 41348675 41348723 -102437732 + MIR SINE MIR 87 140 -122 2936 188 63 9 chr12 41348968 41349096 -102437359 - MER90 LTR ERV1 -4 610 490 1886 126 0 4 chr12 41349096 41349359 -102437096 - AluJb SINE Alu -21 291 30 2936 188 63 9 chr12 41349359 41349805 -102436650 - MER90 LTR ERV1 -124 490 5 305 313 82 0 chr12 41349871 41350005 -102436450 - MER96 DNA MER1_type? -23 152 8 2345 97 10 6 chr12 41350155 41350466 -102435989 + AluSx SINE Alu 1 312 0 381 268 44 92 chr12 41350507 41350699 -102435756 + L2 LINE L2 2977 3152 -161 2248 126 0 0 chr12 41350699 41351001 -102435454 - AluSx SINE Alu -10 302 1 381 268 44 92 chr12 41351001 41351103 -102435352 + L2 LINE L2 3152 3257 -56 27 29 0 0 chr12 41352222 41352256 -102434199 + AT_rich Low_complexity Low_complexity 1 34 0 301 275 28 37 chr12 41353427 41353536 -102432919 + MIR SINE MIR 1 108 -154 1518 169 95 4 chr12 41354237 41354510 -102431945 + AluJb SINE Alu 1 298 -14 1726 152 54 4 chr12 41355121 41355397 -102431058 + AluSx SINE Alu 21 310 -2 3093 158 22 6 chr12 41355452 41355941 -102430514 - LOR1a LTR ERV1 0 497 1 2383 95 3 0 chr12 41356216 41356521 -102429934 + AluSp SINE Alu 1 306 -7 22 0 0 0 chr12 41358992 41359014 -102427441 + AT_rich Low_complexity Low_complexity 1 22 0 503 354 111 19 chr12 41359331 41359656 -102426799 - L2 LINE L2 -4 3268 2914 181 0 0 0 chr12 41359956 41359976 -102426479 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2311 59 3 21 chr12 41359976 41360259 -102426196 - AluY SINE Alu -5 306 1 643 257 22 16 chr12 41360471 41360654 -102425801 + MER34 LTR ERV1 2 185 -357 321 238 56 88 chr12 41360668 41360828 -102425627 + LTR48 LTR ERV1 626 780 -7 378 282 74 13 chr12 41360832 41360981 -102425474 - MIR SINE MIR -59 203 46 198 286 0 36 chr12 41361184 41361240 -102425215 + MIR SINE MIR 79 132 -130 1928 111 76 7 chr12 41361892 41362180 -102424275 + AluSq SINE Alu 1 308 -5 955 276 174 20 chr12 41362328 41362781 -102423674 + LTR33A LTR ERVL 1 523 0 27 0 0 0 chr12 41363919 41363946 -102422509 + AT_rich Low_complexity Low_complexity 1 27 0 1652 91 0 10 chr12 41363946 41364155 -102422300 - AluSq SINE Alu -18 295 89 517 97 0 0 chr12 41364157 41364229 -102422226 + AluSp/q SINE Alu 229 300 -13 194 292 15 0 chr12 41364868 41364933 -102421522 + MIR SINE MIR 90 155 -107 835 196 0 26 chr12 41364997 41365150 -102421305 + AluJb SINE Alu 133 281 -31 1675 184 16 7 chr12 41365195 41365504 -102420951 + AluJo SINE Alu 1 312 0 443 305 74 0 chr12 41365945 41366148 -102420307 - MIR SINE MIR 0 262 45 414 250 28 0 chr12 41366304 41366412 -102420043 + L2 LINE L2 3203 3313 0 753 129 0 16 chr12 41366756 41366880 -102419575 - AluSg/x SINE Alu -14 298 177 1806 128 91 0 chr12 41366896 41367170 -102419285 - AluSx SINE Alu -13 299 1 2162 102 3 3 chr12 41367218 41367525 -102418930 + AluSx SINE Alu 1 307 0 1991 201 66 81 chr12 41367711 41367808 -102418647 - L1MC5 LINE L1 -214 7747 7650 1836 195 0 6 chr12 41367808 41368121 -102418334 + AluJo SINE Alu 1 311 -1 1991 201 66 81 chr12 41368121 41368487 -102417968 - L1MC5 LINE L1 -311 7650 7298 2200 122 0 28 chr12 41368487 41368806 -102417649 + AluSx SINE Alu 3 312 0 1991 201 66 81 chr12 41368806 41369128 -102417327 - L1MC5 LINE L1 -663 7298 6973 241 281 0 61 chr12 41369134 41369216 -102417239 + MIR SINE MIR 23 99 -163 207 0 0 0 chr12 41369218 41369241 -102417214 + (T)n Simple_repeat Simple_repeat 1 23 0 319 237 21 10 chr12 41369272 41369369 -102417086 + MIR SINE MIR 104 201 -61 299 279 0 12 chr12 41369552 41369638 -102416817 - MER5B DNA MER1_type -89 89 5 549 273 136 0 chr12 41369708 41369906 -102416549 + MIR SINE MIR 32 256 -6 2357 98 16 0 chr12 41369935 41370241 -102416214 + AluY SINE Alu 1 311 0 1944 202 68 22 chr12 41371349 41371804 -102414651 + MLT1D LTR MaLR 3 478 -27 27 29 0 0 chr12 41371804 41371838 -102414617 + AT_rich Low_complexity Low_complexity 1 34 0 2152 119 0 3 chr12 41371838 41372132 -102414323 - AluSq SINE Alu -20 293 1 255 31 0 0 chr12 41372134 41372166 -102414289 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1695 165 15 7 chr12 41372170 41372443 -102414012 - AluJo SINE Alu -37 275 1 239 321 76 49 chr12 41372508 41372692 -102413763 + L2 LINE L2 2850 3038 -234 226 306 0 0 chr12 41372956 41373018 -102413437 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 203 267 0 0 chr12 41373460 41373520 -102412935 + T-rich Low_complexity Low_complexity 1 60 0 15559 196 49 17 chr12 41373526 41375773 -102410682 - L1PB1 LINE L1 0 6867 4693 2086 122 3 23 chr12 41375773 41376077 -102410378 + AluSx SINE Alu 1 298 -14 15559 196 49 17 chr12 41376077 41377271 -102409184 - L1PB1 LINE L1 -2174 4693 3539 6138 60 29 3 chr12 41377271 41378031 -102408424 + LTR17 LTR ERV1 1 780 0 15559 196 49 17 chr12 41378031 41379407 -102407048 - L1PB1 LINE L1 -3328 3539 2208 2103 75 45 0 chr12 41379407 41379674 -102406781 + AluSp SINE Alu 30 308 -5 15559 196 49 17 chr12 41379674 41381478 -102404977 - L1PB1 LINE L1 -4659 2208 10 504 332 29 4 chr12 41381807 41382045 -102404410 - MIR SINE MIR -13 249 6 225 108 0 0 chr12 41382222 41382259 -102404196 + (CA)n Simple_repeat Simple_repeat 2 38 0 268 267 122 15 chr12 41382272 41382403 -102404052 + MER112 DNA MER1_type 116 260 0 312 241 27 13 chr12 41382442 41382522 -102403933 + MIR3 SINE MIR 79 160 -48 2362 97 0 0 chr12 41382528 41382828 -102403627 - AluSg SINE Alu -9 301 2 421 256 6 112 chr12 41382831 41383021 -102403434 - MER5B DNA MER1_type -1 177 17 2353 109 3 0 chr12 41383390 41383701 -102402754 - AluSp SINE Alu -1 312 1 526 154 66 0 chr12 41383704 41383795 -102402660 - AluJo SINE Alu -24 288 192 702 197 0 0 chr12 41383808 41383930 -102402525 - AluJo SINE Alu -187 125 4 317 274 57 8 chr12 41383934 41384058 -102402397 - MIR SINE MIR -7 255 126 2267 102 0 3 chr12 41384360 41384654 -102401801 + AluSx SINE Alu 1 293 -19 1262 258 40 72 chr12 41384990 41385098 -102401357 - MER34 LTR ERV1 -5 537 427 2072 122 6 16 chr12 41385098 41385410 -102401045 - AluSx SINE Alu -3 309 1 1262 258 40 72 chr12 41385410 41385856 -102400599 - MER34 LTR ERV1 -115 427 1 1967 153 0 0 chr12 41386242 41386536 -102399919 - AluSx SINE Alu -18 294 1 640 250 83 87 chr12 41386541 41386687 -102399768 + L1MC5 LINE L1 7029 7174 -787 714 200 0 0 chr12 41386687 41386802 -102399653 + FLAM_A SINE Alu 3 117 -16 640 250 83 87 chr12 41386802 41387128 -102399327 + L1MC5 LINE L1 7174 7399 -562 2161 130 0 0 chr12 41387128 41387420 -102399035 + AluSg1 SINE Alu 1 292 -17 640 250 83 87 chr12 41387420 41387806 -102398649 + L1MC5 LINE L1 7399 7785 -176 651 171 125 62 chr12 41387899 41388075 -102398380 + MER5A DNA MER1_type 3 189 0 1668 175 10 23 chr12 41388948 41389076 -102397379 + AluJo SINE Alu 5 133 -179 2285 97 0 7 chr12 41389076 41389386 -102397069 + AluSg SINE Alu 1 308 -2 1668 175 10 23 chr12 41389386 41389565 -102396890 + AluJo SINE Alu 133 308 -4 448 257 0 0 chr12 41389590 41389695 -102396760 + MER103 DNA DNA 9 113 -53 258 116 0 47 chr12 41389837 41389880 -102396575 - MER47B DNA MER2_type 0 418 378 1741 181 128 13 chr12 41389885 41390162 -102396293 - MER47B DNA MER2_type -1905 418 174 234 0 0 0 chr12 41390162 41390188 -102396267 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1455 134 86 37 chr12 41390191 41390459 -102395996 - AluJo SINE Alu -31 281 1 1741 181 128 13 chr12 41390459 41390552 -102395903 - MER47B DNA MER2_type -2150 173 1 2571 34 17 0 chr12 41390692 41390987 -102395468 - AluY SINE Alu -11 300 1 408 279 108 78 chr12 41391903 41392357 -102394098 - L2 LINE L2 -40 3232 2760 578 168 30 0 chr12 41392360 41392461 -102393994 + MLT1D LTR MaLR 402 505 0 202 325 86 8 chr12 41393119 41393236 -102393219 - L2 LINE L2 -1 3312 3187 2377 85 7 0 chr12 41393542 41393848 -102392607 + AluSp SINE Alu 1 308 -5 1049 95 51 13 chr12 41393849 41394007 -102392448 - THE1C LTR MaLR -211 164 1 254 383 0 0 chr12 41394698 41394813 -102391642 + G-rich Low_complexity Low_complexity 4 118 0 2277 87 13 7 chr12 41396442 41396751 -102389704 + AluSp SINE Alu 1 311 -2 666 260 42 128 chr12 41396884 41397301 -102389154 + MER34 LTR ERV1 1 452 -90 1649 65 83 0 chr12 41397301 41397517 -102388938 + AluY SINE Alu 9 242 -69 666 260 42 128 chr12 41397517 41397528 -102388927 + MER34 LTR ERV1 452 462 -80 1402 153 125 4 chr12 41397528 41397776 -102388679 + AluJb SINE Alu 5 282 -30 324 0 0 0 chr12 41397785 41397821 -102388634 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 666 260 42 128 chr12 41397821 41397974 -102388481 + MER34 LTR ERV1 470 542 0 535 191 0 0 chr12 41398437 41398521 -102387934 + AluJ/FLAM SINE Alu 2 85 -227 878 276 43 81 chr12 41399078 41399585 -102386870 + MER34 LTR ERV1 25 512 -30 666 276 84 4 chr12 41399619 41399858 -102386597 + MIR SINE MIR 5 262 0 411 154 90 0 chr12 41399863 41399941 -102386514 + Tigger4(Zombi) DNA MER2_type 2 86 -2645 * 2344 100 18 131 chr12 41399939 41399984 -102386471 + Tigger4(Zombi) DNA MER2_type 2295 2343 -388 2148 112 7 0 chr12 41399984 41400279 -102386176 + AluSx SINE Alu 1 297 -15 2344 100 18 131 chr12 41400279 41400342 -102386113 + Tigger4(Zombi) DNA MER2_type 2343 2411 -320 2349 83 3 0 chr12 41400342 41400644 -102385811 + AluY SINE Alu 1 303 -8 2469 69 0 16 chr12 41400653 41400958 -102385497 + AluY SINE Alu 2 301 -10 2344 100 18 131 chr12 41400958 41401281 -102385174 + Tigger4(Zombi) DNA MER2_type 2419 2679 -52 2220 121 3 3 chr12 41401281 41401594 -102384861 - AluSq SINE Alu 0 313 1 2344 100 18 131 chr12 41401594 41401640 -102384815 + Tigger4(Zombi) DNA MER2_type 2679 2729 -2 183 269 214 41 chr12 41401773 41401841 -102384614 - MIR SINE MIR -6 256 201 2410 81 0 10 chr12 41401841 41402138 -102384317 - AluSq SINE Alu -19 294 1 183 269 214 41 chr12 41402138 41402214 -102384241 - MIR SINE MIR -61 201 87 1941 141 26 7 chr12 41402398 41402702 -102383753 + AluSx SINE Alu 1 310 -2 2108 126 3 0 chr12 41402862 41403156 -102383299 - AluSx SINE Alu -17 295 1 2025 119 3 31 chr12 41403255 41403573 -102382882 + AluSx SINE Alu 1 309 -3 23 33 0 0 chr12 41403841 41403871 -102382584 + AT_rich Low_complexity Low_complexity 1 30 0 2162 96 0 17 chr12 41404053 41404345 -102382110 + AluSx SINE Alu 1 287 -25 2229 132 0 0 chr12 41405496 41405806 -102380649 + AluSx SINE Alu 1 310 -2 364 295 40 23 chr12 41406737 41406910 -102379545 + MIR SINE MIR 63 238 -24 285 335 66 47 chr12 41407131 41407450 -102379005 + L2 LINE L2 1620 1944 -1370 182 167 0 24 chr12 41407594 41407636 -102378819 + CT-rich Low_complexity Low_complexity 2 42 0 393 240 77 0 chr12 41407735 41407839 -102378616 - MER94 DNA DNA -3 131 20 241 192 64 77 chr12 41407866 41407897 -102378558 + L2 LINE L2 2213 2243 -1071 455 291 64 28 chr12 41407897 41408148 -102378307 + MIR SINE MIR 2 261 -1 241 192 64 77 chr12 41408148 41408194 -102378261 + L2 LINE L2 2243 2289 -1025 2641 52 0 7 chr12 41408284 41408591 -102377864 - AluSp SINE Alu -6 307 3 1813 163 3 22 chr12 41408594 41408907 -102377548 - AluJo SINE Alu -5 307 1 844 143 8 8 chr12 41409247 41409380 -102377075 + FLAM_C SINE Alu 1 133 0 215 163 47 0 chr12 41410230 41410273 -102376182 + (TGG)n Simple_repeat Simple_repeat 1 45 0 180 111 0 0 chr12 41410274 41410301 -102376154 + (TG)n Simple_repeat Simple_repeat 1 27 0 718 241 139 19 chr12 41411499 41411715 -102374740 - MLT1H1 LTR MaLR -11 544 303 254 197 164 0 chr12 41412055 41412116 -102374339 + L2 LINE L2 3202 3272 0 735 293 119 63 chr12 41413465 41413989 -102372466 - L2 LINE L2 -1 3312 2762 292 256 123 89 chr12 41414042 41414245 -102372210 + L2 LINE L2 3104 3313 0 235 307 0 57 chr12 41414528 41414616 -102371839 + MIR SINE MIR 29 111 -151 543 266 236 0 chr12 41414918 41415117 -102371338 - MIR SINE MIR 0 262 17 204 328 60 15 chr12 41415502 41415569 -102370886 + L2 LINE L2 3240 3309 -4 243 0 0 0 chr12 41416208 41416235 -102370220 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 405 0 0 0 chr12 41416234 41416279 -102370176 + (TG)n Simple_repeat Simple_repeat 2 46 0 318 275 69 50 chr12 41416361 41416551 -102369904 + MIR SINE MIR 24 216 -46 198 0 0 0 chr12 41416913 41416935 -102369520 + (TG)n Simple_repeat Simple_repeat 2 23 0 326 309 66 86 chr12 41417063 41417412 -102369043 - L2 LINE L2 -36 3236 2895 2438 46 19 16 chr12 41417476 41417783 -102368672 + AluY SINE Alu 1 308 -3 360 183 44 88 chr12 41417783 41417891 -102368564 + L1MB7 LINE L1 6039 6141 -43 2249 60 0 69 chr12 41417891 41418041 -102368414 + AluY SINE Alu 1 119 -192 531 0 0 0 chr12 41418041 41418100 -102368355 + (TA)n Simple_repeat Simple_repeat 2 60 0 2249 60 0 69 chr12 41418100 41418266 -102368189 + AluY SINE Alu 119 295 -16 360 183 44 88 chr12 41418266 41418294 -102368161 + L1MB7 LINE L1 6141 6169 -15 318 282 122 6 chr12 41418372 41418553 -102367902 - L2 LINE L2 -557 2757 2556 1675 223 79 24 chr12 41418942 41419396 -102367059 + L1MB8 LINE L1 5648 6126 -52 568 107 33 25 chr12 41419405 41419527 -102366928 + GA-rich Low_complexity Low_complexity 1 123 0 274 236 187 41 chr12 41420431 41420554 -102365901 + L2 LINE L2 3133 3273 -40 9119 181 28 15 chr12 41420961 41421725 -102364730 - L1PA16 LINE L1 0 6869 6117 2431 131 21 21 chr12 41421725 41422100 -102364355 - THE1C LTR MaLR 0 375 1 9119 181 28 15 chr12 41422100 41424153 -102362302 - L1PA16 LINE L1 -752 6117 4024 10514 142 53 16 chr12 41424161 41424796 -102361659 - L1PA16 LINE L1 -4290 2559 1949 2076 133 3 3 chr12 41424796 41425096 -102361359 - AluSx SINE Alu -12 300 1 10514 142 53 16 chr12 41425096 41426205 -102360250 - L1PA16 LINE L1 -4900 1949 750 2007 206 53 14 chr12 41426238 41426675 -102359780 + MSTB2 LTR MaLR 1 454 -3 2090 124 14 0 chr12 41427120 41427411 -102359044 + AluSq SINE Alu 1 295 -18 1133 218 58 10 chr12 41427591 41427885 -102358570 - L1ME3A LINE L1 -5 6165 5858 1358 213 42 3 chr12 41427989 41428299 -102358156 + L1MA6 LINE L1 5978 6299 -1 208 299 103 10 chr12 41428397 41428494 -102357961 - L2 LINE L2 -763 2551 2446 2361 76 0 0 chr12 41428498 41428788 -102357667 - AluY SINE Alu -21 290 1 272 237 0 65 chr12 41428788 41428876 -102357579 - L2 LINE L2 -926 2388 2307 2134 117 3 0 chr12 41430637 41430927 -102355528 - AluSx SINE Alu -21 291 1 250 287 112 58 chr12 41430956 41431144 -102355311 - MIR SINE MIR -32 230 33 371 104 0 30 chr12 41431940 41432007 -102354448 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 881 197 13 13 chr12 41432024 41432327 -102354128 + MER93b LTR ERV1 1 402 0 2022 116 14 0 chr12 41432362 41432647 -102353808 + AluJb SINE Alu 7 295 -17 470 17 17 0 chr12 41432657 41432716 -102353739 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 1805 145 0 24 chr12 41433223 41433512 -102352943 + AluSx SINE Alu 24 305 -7 2511 190 30 4 chr12 41435197 41435665 -102350790 - MLT1D LTR MaLR 0 505 26 2197 122 6 3 chr12 41435886 41436197 -102350258 - AluSp SINE Alu -1 312 1 22 56 0 0 chr12 41436220 41436256 -102350199 + AT_rich Low_complexity Low_complexity 1 36 0 198 143 0 0 chr12 41436375 41436410 -102350045 + (TTAAA)n Simple_repeat Simple_repeat 1 35 0 219 253 121 81 chr12 41437552 41437651 -102348804 + L2 LINE L2 3170 3272 0 1155 203 60 48 chr12 41437750 41438152 -102348303 - MER4C LTR ERV1 -18 447 149 610 149 8 50 chr12 41438179 41438300 -102348155 - MER4C LTR ERV1 -349 116 1 434 254 45 82 chr12 41439375 41439643 -102346812 - MIR SINE MIR 0 262 5 2292 115 0 0 chr12 41439698 41440002 -102346453 + AluSx SINE Alu 1 304 -8 1586 159 3 61 chr12 41440435 41440761 -102345694 + MLT1B LTR MaLR 84 390 0 621 189 42 14 chr12 41440768 41440911 -102345544 - MER20 DNA MER1_type -42 177 31 711 213 98 138 chr12 41441115 41441567 -102344888 + MER34B LTR ERV1 5 430 -135 2058 100 53 13 chr12 41441567 41441866 -102344589 + AluY SINE Alu 1 311 0 711 213 98 138 chr12 41441866 41441995 -102344460 + MER34B LTR ERV1 430 563 -2 561 133 203 0 chr12 41442982 41443110 -102343345 + LTR47A LTR ERVL 261 414 -38 2729 151 72 2 chr12 41443902 41444373 -102342082 + L1MB2 LINE L1 5666 6169 -2 312 231 46 9 chr12 41444605 41444713 -102341742 + L1ME4a LINE L1 6010 6121 0 1033 203 52 19 chr12 41445051 41445263 -102341192 - MER20 DNA MER1_type 0 219 1 197 382 0 0 chr12 41445782 41445850 -102340605 + MIR SINE MIR 158 225 -37 357 235 38 49 chr12 41445866 41445976 -102340479 + MIR3 SINE MIR 68 178 -30 10383 193 25 44 chr12 41446446 41449567 -102336888 - L1PA16 LINE L1 0 6166 2987 984 77 35 6 chr12 41449567 41449736 -102336719 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 1467 159 3 97 chr12 41449737 41450045 -102336410 - AluJo SINE Alu -33 279 1 10383 193 25 44 chr12 41450045 41450619 -102335836 - L1PA16 LINE L1 -3178 2988 2555 346 302 79 16 chr12 41450928 41451054 -102335401 - MIR SINE MIR -37 225 92 2411 75 0 3 chr12 41451740 41452046 -102334409 + AluY SINE Alu 1 305 -6 310 169 52 39 chr12 41452885 41452962 -102333493 - MLT1K LTR MaLR 0 588 511 1830 165 0 16 chr12 41452987 41453330 -102333125 + AluJo SINE Alu 1 338 0 240 303 71 20 chr12 41453332 41453431 -102333024 - MLT1L LTR MaLR -117 498 395 358 280 39 68 chr12 41453506 41453713 -102332742 - MLT1L LTR MaLR -372 243 43 1520 280 158 51 chr12 41453840 41455681 -102330774 + L2 LINE L2 1202 3252 -61 1933 157 140 38 chr12 41455681 41456132 -102330323 + LTR54B LTR ERV1 1 497 -1 1520 280 158 51 chr12 41456132 41456195 -102330260 + L2 LINE L2 3252 3307 -6 339 283 75 112 chr12 41456295 41456723 -102329732 - L2 LINE L2 -1 3271 2860 495 283 96 0 chr12 41456782 41456917 -102329538 - MIR SINE MIR -8 254 97 4281 107 67 5 chr12 41456917 41457515 -102328940 - MER41B LTR ERV1 0 635 1 495 283 96 0 chr12 41457515 41457556 -102328899 - MIR SINE MIR -165 97 61 256 295 39 77 chr12 41457576 41457715 -102328740 + MIR SINE MIR 64 194 -68 2075 129 14 0 chr12 41457715 41458010 -102328445 + AluSx SINE Alu 1 299 -13 256 295 39 77 chr12 41458010 41458077 -102328378 + MIR SINE MIR 194 262 0 913 276 70 48 chr12 41458467 41458969 -102327486 - L1MC4a LINE L1 -109 6012 5500 350 127 0 0 chr12 41459024 41459079 -102327376 - Tigger7 DNA MER2_type -2364 123 69 * 392 191 15 0 chr12 41459076 41459144 -102327311 + Tigger7 DNA MER2_type 25 93 -612 287 246 16 0 chr12 41459137 41459198 -102327257 - Tigger7 DNA MER2_type -268 71 10 * 430 286 133 31 chr12 41459305 41459560 -102326895 - L1MC4a LINE L1 -760 5386 5106 1922 158 0 0 chr12 41459755 41460068 -102326387 - AluJb SINE Alu 0 313 1 268 235 25 34 chr12 41460201 41460320 -102326135 - L1MC4a LINE L1 -1439 4707 4590 277 277 68 40 chr12 41460381 41460529 -102325926 - MLT1I LTR MaLR -2 407 256 328 296 41 41 chr12 41460561 41460733 -102325722 + MLT1I LTR MaLR 38 209 -200 241 260 0 27 chr12 41460861 41460934 -102325521 + MLT1I LTR MaLR 334 404 -5 241 273 30 0 chr12 41461356 41461422 -102325033 - L1MC4 LINE L1 -1339 6703 6636 698 283 39 0 chr12 41462730 41462960 -102323495 + L2 LINE L2 1271 1509 -1805 992 222 5 5 chr12 41462983 41463181 -102323274 + MER3 DNA MER1_type 8 205 -4 281 207 17 0 chr12 41463132 41463190 -102323265 - MER3 DNA MER1_type -108 101 43 * 454 229 84 28 chr12 41463193 41463372 -102323083 - L2 LINE L2 -1524 1790 1602 5294 138 9 1 chr12 41463375 41464180 -102322275 + L1PA15 LINE L1 5348 6158 -7 198 0 0 0 chr12 41464183 41464205 -102322250 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 207 0 0 0 chr12 41464212 41464235 -102322220 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 753 181 216 0 chr12 41464309 41464480 -102321975 - MER3 DNA MER1_type -1 208 1 3448 248 102 34 chr12 41464538 41464653 -102321802 - HAL1 LINE L1 -4 2503 2397 2287 83 0 26 chr12 41464653 41464955 -102321500 - AluY SINE Alu -17 294 1 3448 248 102 34 chr12 41464955 41465903 -102320552 - HAL1 LINE L1 -110 2397 1324 2201 113 0 3 chr12 41465903 41466203 -102320252 - AluSx SINE Alu -13 299 1 3448 248 102 34 chr12 41466203 41466513 -102319942 - HAL1 LINE L1 -1183 1324 1036 728 251 175 21 chr12 41466547 41466878 -102319577 - HAL1 LINE L1 -2123 384 3 544 237 65 27 chr12 41466882 41467068 -102319387 + L2 LINE L2 1822 2014 -1300 189 0 0 0 chr12 41467084 41467105 -102319350 + (TC)n Simple_repeat Simple_repeat 2 22 0 616 180 49 0 chr12 41467123 41467245 -102319210 - L1ME2 LINE L1 -1 6163 6036 695 198 55 92 chr12 41467245 41467403 -102319052 + L2 LINE L2 2067 2215 -1099 1107 209 141 0 chr12 41467403 41467686 -102318769 + MER33 DNA MER1_type 1 323 -1 695 198 55 92 chr12 41467686 41467765 -102318690 + L2 LINE L2 2215 2295 -1019 2509 112 14 16 chr12 41467765 41468132 -102318323 + L1PA16 LINE L1 5800 6165 -1 2944 80 2 52 chr12 41468197 41468623 -102317832 + MLT2A1 LTR ERVL 5 409 -35 810 68 0 0 chr12 41468656 41468759 -102317696 - MLT2A2 LTR ERVL -346 107 5 631 101 9 37 chr12 41468821 41468919 -102317536 - L1PA16 LINE L1 0 6166 6070 259 24 0 48 chr12 41468919 41468961 -102317494 + (TA)n Simple_repeat Simple_repeat 2 41 0 304 0 0 0 chr12 41468971 41469004 -102317451 + MLT2A1 LTR ERVL 412 444 0 1176 310 85 19 chr12 41469018 41469593 -102316862 + L2 LINE L2 2288 2900 -414 1873 180 0 0 chr12 41469597 41469902 -102316553 - AluJb SINE Alu -7 305 1 1480 135 5 0 chr12 41470064 41470272 -102316183 - MER2 DNA MER2_type -135 210 2 466 121 0 33 chr12 41470865 41470956 -102315499 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 284 237 53 53 chr12 41471252 41471328 -102315127 - L2 LINE L2 0 3272 3197 681 211 21 0 chr12 41471332 41471474 -102314981 + MLT2B1 LTR ERVL 3 147 -373 394 141 24 82 chr12 41471849 41471934 -102314521 - MSTC LTR MaLR -1 427 348 763 177 127 6 chr12 41471934 41472092 -102314363 + MER46A DNA MER2_type 1 177 -59 244 333 0 38 chr12 41472395 41472500 -102313955 - MIR SINE MIR -63 145 45 360 271 119 30 chr12 41472984 41473210 -102313245 - MIR SINE MIR -7 255 10 1561 98 18 27 chr12 41473301 41473525 -102312930 + AluSg/x SINE Alu 73 294 -16 503 195 102 16 chr12 41473998 41474126 -102312329 - MER58A DNA MER1_type 0 139 1 1092 216 191 19 chr12 41474388 41474707 -102311748 - MLT1A2 LTR MaLR 0 374 1 2309 109 3 0 chr12 41475170 41475472 -102310983 + AluSx SINE Alu 1 303 -9 2011 154 0 3 chr12 41475475 41475773 -102310682 + AluJb SINE Alu 1 297 -15 614 202 10 0 chr12 41475776 41475880 -102310575 + AluJo/FRAM SINE Alu 181 285 -27 31 0 0 0 chr12 41475884 41475915 -102310540 + AT_rich Low_complexity Low_complexity 1 31 0 399 257 203 31 chr12 41476157 41476369 -102310086 - MIR SINE MIR 0 262 9 866 207 62 6 chr12 41476369 41476548 -102309907 + MER5A DNA MER1_type 1 189 0 1518 102 0 0 chr12 41477232 41477428 -102309027 + AluSg SINE Alu 2 197 -113 823 123 0 0 chr12 41477479 41477593 -102308862 - AluSp/q SINE Alu -6 307 194 3277 138 52 32 chr12 41477593 41478338 -102308117 - L1MA4 LINE L1 -14 6286 5459 2361 98 0 3 chr12 41478544 41478849 -102307606 + AluY SINE Alu 1 304 -7 452 214 8 43 chr12 41479310 41479427 -102307028 - L1ME1 LINE L1 0 6166 6054 * 914 229 113 102 chr12 41479421 41479980 -102306475 - L1MEc LINE L1 -4335 2061 1497 6657 43 0 0 chr12 41479982 41480730 -102305725 - L1PA5 LINE L1 -3 6151 5404 1469 85 2 6 chr12 41480730 41480970 -102305485 + L1P LINE L1 5193 5428 -723 23 33 0 0 chr12 41481926 41481956 -102304499 + AT_rich Low_complexity Low_complexity 1 30 0 386 331 18 30 chr12 41482855 41483024 -102303431 + MIR SINE MIR 29 195 -67 239 53 0 26 chr12 41483035 41483073 -102303382 + (TAA)n Simple_repeat Simple_repeat 2 38 0 920 261 54 0 chr12 41483074 41483315 -102303140 - MIR SINE MIR -8 254 1 329 258 72 10 chr12 41483327 41483424 -102303031 - MIR SINE MIR 0 262 160 1487 210 6 38 chr12 41483468 41483782 -102302673 + L1MD1 LINE L1 15 318 -6222 675 200 0 9 chr12 41483791 41483906 -102302549 + FLAM_C SINE Alu 2 115 -28 213 39 0 0 chr12 41483906 41483932 -102302523 + (GA)n Simple_repeat Simple_repeat 2 27 0 8279 190 63 70 chr12 41483932 41484585 -102301870 + L1MD1 LINE L1 317 973 -5567 243 0 0 0 chr12 41484585 41484612 -102301843 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8279 190 63 70 chr12 41484612 41485008 -102301447 + L1MD1 LINE L1 973 1370 -5170 197 33 33 0 chr12 41485008 41485038 -102301417 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 8279 190 63 70 chr12 41485038 41485922 -102300533 + L1MD1 LINE L1 1370 2224 -4316 2158 130 0 0 chr12 41485922 41486214 -102300241 + AluSx SINE Alu 1 292 -20 8279 190 63 70 chr12 41486214 41487074 -102299381 + L1MD1 LINE L1 2224 3089 -3451 1505 174 44 77 chr12 41487081 41487217 -102299238 - THE1B LTR MaLR 0 364 225 2136 114 0 0 chr12 41487217 41487497 -102298958 - AluSx SINE Alu -2 310 31 1505 174 44 77 chr12 41487497 41487814 -102298641 - THE1B LTR MaLR -139 225 1 387 179 60 0 chr12 41487918 41487985 -102298470 + FLAM SINE Alu 48 118 -15 893 254 17 27 chr12 41488008 41488102 -102298353 + L1MD1 LINE L1 3233 3326 -3214 2457 71 3 0 chr12 41488102 41488396 -102298059 + AluY SINE Alu 1 295 -16 893 254 17 27 chr12 41488396 41488596 -102297859 + L1MD1 LINE L1 3326 3524 -3016 5989 126 195 92 chr12 41488605 41490141 -102296314 - pTR5 LTR ERV1 0 2438 744 2472 255 14 4 chr12 41490141 41490846 -102295609 + L1MD1 LINE L1 3520 4231 -2309 2404 60 0 35 chr12 41490904 41491120 -102295335 - L1PB1 LINE L1 -43 6108 5905 2431 71 0 0 chr12 41491120 41491416 -102295039 - AluY SINE Alu -15 296 1 2404 60 0 35 chr12 41491416 41491518 -102294937 - L1PB1 LINE L1 -246 5905 5801 * 5285 208 25 22 chr12 41491501 41492095 -102294360 + L1MD1 LINE L1 4198 4789 -1847 2107 142 3 0 chr12 41492095 41492404 -102294051 + AluSg SINE Alu 1 310 0 5285 208 25 22 chr12 41492404 41493168 -102293287 + L1MD1 LINE L1 4789 5549 -1087 2218 101 3 0 chr12 41493168 41493456 -102292999 + AluSg SINE Alu 1 289 -21 5285 208 25 22 chr12 41493456 41494341 -102292114 + L1MD1 LINE L1 5549 6449 -187 927 172 0 0 chr12 41494352 41494497 -102291958 + AluJb SINE Alu 145 289 -23 2685 113 35 0 chr12 41494567 41494940 -102291515 + L1PA11 LINE L1 5788 6173 -1 25 0 0 0 chr12 41495669 41495694 -102290761 + AT_rich Low_complexity Low_complexity 1 25 0 2033 142 0 0 chr12 41495698 41496008 -102290447 - AluSx SINE Alu 0 310 1 1543 190 21 14 chr12 41496010 41496299 -102290156 - AluJo SINE Alu -19 293 3 287 206 56 24 chr12 41496469 41496595 -102289860 + (TA)n Simple_repeat Simple_repeat 2 131 0 1747 152 22 4 chr12 41497123 41497400 -102289055 - AluJo SINE Alu -30 282 1 222 195 0 0 chr12 41497584 41497625 -102288830 + CT-rich Low_complexity Low_complexity 2 42 0 1697 93 0 52 chr12 41497651 41497899 -102288556 + AluSx SINE Alu 57 291 -21 1610 104 24 15 chr12 41497952 41498276 -102288179 + L1MA4A LINE L1 5182 5507 -743 * 30092 122 17 64 chr12 41498272 41504743 -102281712 + L1PA8 LINE L1 8 6170 -2 3203 148 38 58 chr12 41504742 41505393 -102281062 + L1MA4A LINE L1 5482 6119 -184 * 377 200 80 0 chr12 41505398 41505498 -102280957 + L1MA4A LINE L1 6194 6301 -2 292 308 43 8 chr12 41505944 41506061 -102280394 - MIR SINE MIR -108 154 34 266 321 84 32 chr12 41506165 41506355 -102280100 + MIR SINE MIR 63 262 0 1700 164 37 0 chr12 41506798 41507115 -102279340 + AluJb SINE Alu 5 331 0 245 170 64 0 chr12 41507762 41507809 -102278646 - L1MC/D LINE L1 -2069 5739 5690 6944 121 6 10 chr12 41507910 41508912 -102277543 + THE1C-int LTR MaLR 583 1580 0 2627 111 25 5 chr12 41508912 41509280 -102277175 + THE1C LTR MaLR 1 375 0 702 256 40 48 chr12 41509418 41509530 -102276925 - MIR SINE MIR -6 256 145 2284 101 0 0 chr12 41509530 41509851 -102276604 - AluY SINE Alu 0 321 1 702 256 40 48 chr12 41509851 41509963 -102276492 - MIR SINE MIR -117 145 32 955 117 0 0 chr12 41510763 41510891 -102275564 - MLT2A2 LTR ERVL 0 453 326 6599 111 74 16 chr12 41510892 41511914 -102274541 - THE1B-int LTR MaLR -498 1082 1 1090 143 0 0 chr12 41511914 41512068 -102274387 - THE1B LTR MaLR 0 364 211 25 31 0 0 chr12 41512068 41512100 -102274355 + AT_rich Low_complexity Low_complexity 1 32 0 10544 62 2 2 chr12 41512100 41514306 -102272149 - L1PA5 LINE L1 0 6154 3950 278 309 103 29 chr12 41514753 41514889 -102271566 - MIR SINE MIR -33 229 84 260 309 209 15 chr12 41515298 41515628 -102270827 + MLT1L LTR MaLR 214 607 -8 363 299 152 15 chr12 41515683 41515880 -102270575 + L3b LINE CR1 1345 1568 -15 24 0 0 0 chr12 41516209 41516233 -102270222 + AT_rich Low_complexity Low_complexity 1 24 0 4447 31 2 16 chr12 41516561 41517111 -102269344 - L1PA4 LINE L1 -1 6154 5613 219 341 30 78 chr12 41517490 41517657 -102268798 - L2 LINE L2 -213 3059 2901 1150 249 114 27 chr12 41518023 41518472 -102267983 + L2 LINE L2 1959 2446 -868 1451 207 84 53 chr12 41519188 41519618 -102266837 + LTR47B LTR ERVL 1 443 0 441 261 137 38 chr12 41519634 41519845 -102266610 + MIR SINE MIR 31 262 0 28857 111 10 21 chr12 41521599 41527876 -102258579 - L1PA7 LINE L1 0 6469 163 200 305 84 38 chr12 41527931 41528062 -102258393 - MIR3 SINE MIR -63 145 9 21 36 0 0 chr12 41528425 41528453 -102258002 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr12 41528606 41528628 -102257827 + AT_rich Low_complexity Low_complexity 1 22 0 467 158 0 12 chr12 41529344 41529426 -102257029 + MER63 DNA MER1_type 40 746 -316 392 293 8 8 chr12 41529712 41529845 -102256610 + LTR67 LTR ERVL 418 550 -7 553 183 32 40 chr12 41529855 41529981 -102256474 - MIR SINE MIR -75 187 63 496 318 20 5 chr12 41530619 41530817 -102255638 - LTR67 LTR ERVL -1 556 356 263 279 0 0 chr12 41530970 41531031 -102255424 - LTR67 LTR ERVL -383 174 114 749 292 80 26 chr12 41531496 41531883 -102254572 + MLT1J2 LTR MaLR 13 420 -30 242 302 0 0 chr12 41532795 41532858 -102253597 + MER82 DNA MER2_type 14 76 -577 400 294 44 22 chr12 41532931 41533111 -102253344 - MIR SINE MIR -75 187 4 970 243 5 5 chr12 41533151 41533357 -102253098 + MER82 DNA MER2_type 448 653 0 384 22 0 0 chr12 41533427 41533472 -102252983 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 210 266 32 96 chr12 41535112 41535206 -102251249 - MIR SINE MIR -56 206 119 1326 216 78 49 chr12 41535246 41535696 -102250759 + MLT1C LTR MaLR 1 463 -4 481 275 28 9 chr12 41536108 41536283 -102250172 - MER77 LTR ERV1 -179 426 247 2326 110 41 14 chr12 41536321 41536686 -102249769 - THE1C LTR MaLR 0 375 1 1268 240 54 93 chr12 41537401 41538101 -102248354 - MER21B LTR ERV1 -162 701 29 1995 137 0 0 chr12 41538262 41538567 -102247888 - AluSc SINE Alu 0 305 1 232 307 184 0 chr12 41540724 41540838 -102245617 + MIR SINE MIR 128 262 0 438 309 83 20 chr12 41541423 41541915 -102244540 + L1ME4a LINE L1 4506 5028 -1118 2328 73 36 10 chr12 41541929 41542231 -102244224 + AluY SINE Alu 1 310 -1 251 285 33 46 chr12 41542461 41542729 -102243726 + L1ME4a LINE L1 5266 5473 -691 348 268 45 68 chr12 41542808 41543028 -102243427 + L1ME4a LINE L1 5727 5941 -180 1209 193 33 96 chr12 41544662 41545056 -102241399 + LTR8 LTR ERV1 1 369 -322 16118 190 17 32 chr12 41545056 41545816 -102240639 - L1PA15-16 LINE L1 -1235 5614 4844 2174 19 4 4 chr12 41545816 41546075 -102240380 - L1PA2 LINE L1 -7 6148 5890 16118 190 17 32 chr12 41546075 41551025 -102235430 - L1PA15-16 LINE L1 -2005 4844 1 511 347 16 41 chr12 41551793 41552038 -102234417 + MIR SINE MIR 3 241 -21 2382 137 3 3 chr12 41552223 41552560 -102233895 - MER1B DNA MER1_type 0 337 1 180 77 0 0 chr12 41552606 41552632 -102233823 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 837 223 135 63 chr12 41552753 41553184 -102233271 - MLT1H LTR MaLR -15 534 73 2318 59 3 3 chr12 41553879 41554165 -102232290 - AluY SINE Alu -10 301 16 2691 93 11 16 chr12 41554566 41554943 -102231512 - THE1C LTR MaLR 0 375 1 803 185 15 0 chr12 41555611 41555741 -102230714 - FLAM_C SINE Alu -11 132 1 1961 121 7 0 chr12 41556349 41556621 -102229834 + AluSx SINE Alu 34 307 -5 25 31 0 0 chr12 41556624 41556656 -102229799 + AT_rich Low_complexity Low_complexity 1 32 0 186 150 0 0 chr12 41556774 41556814 -102229641 + (GTTTG)n Simple_repeat Simple_repeat 2 41 0 961 255 43 18 chr12 41557293 41557575 -102228880 + MER67C LTR ERV1 37 325 -385 1980 173 24 0 chr12 41558009 41558338 -102228117 + MER1B DNA MER1_type 1 337 0 15421 101 1 0 chr12 41558462 41561511 -102224944 + L1PA7 LINE L1 3088 6143 -11 34 0 0 0 chr12 41561511 41561545 -102224910 + AT_rich Low_complexity Low_complexity 1 34 0 2008 215 65 18 chr12 41562359 41563024 -102223431 - L1MEc LINE L1 -4001 2395 1700 * 3202 230 91 57 chr12 41563010 41564072 -102222383 - L1MEc LINE L1 -4913 1483 344 336 24 0 0 chr12 41564072 41564113 -102222342 + (TC)n Simple_repeat Simple_repeat 1 41 0 3202 230 91 57 chr12 41564113 41564434 -102222021 - L1MEc LINE L1 -6052 344 35 295 206 15 0 chr12 41564442 41564510 -102221945 - MER94 DNA DNA -65 69 1 250 255 102 10 chr12 41565507 41565605 -102220850 - MLT1K LTR MaLR -28 560 454 297 0 0 0 chr12 41565641 41565674 -102220781 + (TG)n Simple_repeat Simple_repeat 2 34 0 296 297 117 8 chr12 41565815 41565943 -102220512 - MLT1K LTR MaLR -374 214 73 488 220 73 61 chr12 41566489 41566694 -102219761 - MIR SINE MIR 0 262 3 220 290 0 16 chr12 41567087 41567149 -102219306 - L2 LINE L2 -212 3060 3000 1624 88 9 4 chr12 41567155 41567382 -102219073 + THE1B LTR MaLR 1 228 -136 27089 86 12 4 chr12 41567384 41571311 -102215144 + L1P LINE L1 1 3960 -2186 369 253 67 13 chr12 41572075 41572225 -102214230 - L1ME4a LINE L1 -2 6119 5962 1848 161 0 23 chr12 41572834 41573144 -102213311 + AluJb SINE Alu 1 303 -9 274 328 16 70 chr12 41573165 41573351 -102213104 - MIR SINE MIR -19 243 68 180 0 0 0 chr12 41573937 41573957 -102212498 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 4702 96 42 1 chr12 41573963 41574653 -102211802 - L1PB1 LINE L1 -8 6143 5426 2126 216 81 14 chr12 41575162 41575670 -102210785 - MLT1F LTR MaLR 0 542 1 3701 106 0 4 chr12 41576539 41577051 -102209404 + MER9 LTR ERVK 2 511 0 4273 75 2 18 chr12 41577051 41577653 -102208802 + HERVK9 LTR ERVK 1 592 -5324 11623 66 2 0 chr12 41577653 41579169 -102207286 + HERVK9 LTR ERVK 1268 2786 -3130 14205 76 7 1 chr12 41579169 41581081 -102205374 + HERVK9 LTR ERVK 3711 5634 -282 2174 75 0 0 chr12 41581174 41581456 -102204999 + HERVK9 LTR ERVK 5635 5916 0 3577 116 2 4 chr12 41581456 41581967 -102204488 + MER9 LTR ERVK 1 510 -1 222 91 0 0 chr12 41582314 41582347 -102204108 + (CA)n Simple_repeat Simple_repeat 2 34 0 226 269 45 0 chr12 41583119 41583186 -102203269 - MIR SINE MIR -98 164 95 486 246 32 0 chr12 41583320 41583446 -102203009 + MER69 DNA AcHobo 1 130 -2396 267 163 0 0 chr12 41583476 41583525 -102202930 + MER69 DNA AcHobo 2477 2525 -1 * 918 288 19 29 chr12 41583525 41583823 -102202632 + MLT1J LTR MaLR 46 340 -171 4368 210 34 62 chr12 41583825 41584278 -102202177 - L1ME4a LINE L1 -440 5802 5338 1646 110 4 61 chr12 41584278 41584541 -102201914 - AluJb SINE Alu -1 311 64 4368 210 34 62 chr12 41584541 41585204 -102201251 - L1ME4a LINE L1 -904 5338 4658 1858 172 0 11 chr12 41585204 41585489 -102200966 - AluJb SINE Alu -30 282 1 4368 210 34 62 chr12 41585489 41585807 -102200648 - L1ME4a LINE L1 -1584 4658 4333 1975 127 0 11 chr12 41585807 41586114 -102200341 - AluY SINE Alu 0 304 1 4368 210 34 62 chr12 41586114 41586805 -102199650 - L1ME4a LINE L1 -1909 4333 3711 825 84 34 34 chr12 41586818 41586997 -102199458 + CT-rich Low_complexity Low_complexity 1 179 0 1604 244 42 9 chr12 41586997 41587574 -102198881 - L1ME4a LINE L1 -2452 3694 3099 2001 143 14 14 chr12 41587574 41587905 -102198550 - Tigger1 DNA MER2_type 0 2418 2085 2388 74 0 3 chr12 41587905 41588215 -102198240 - AluY SINE Alu -2 309 1 2001 143 14 14 chr12 41588215 41588240 -102198215 - Tigger1 DNA MER2_type -332 2086 2062 12924 178 22 16 chr12 41588243 41589280 -102197175 - L1MA4A LINE L1 -2 7003 5974 1686 123 0 0 chr12 41589280 41589507 -102196948 - AluSq SINE Alu -8 305 79 12924 178 22 16 chr12 41589507 41592371 -102194084 - L1MA4A LINE L1 -1031 5974 3077 40712 36 22 1 chr12 41592377 41598401 -102188054 - L1PA3 LINE L1 0 6155 2 228 187 67 13 chr12 41598402 41598477 -102187978 - L1MA4A LINE L1 -3764 3084 3006 12153 173 70 11 chr12 41598484 41598927 -102187528 - L1MA4A LINE L1 -3945 2904 2488 2021 133 0 13 chr12 41598927 41599275 -102187180 + AluSx SINE Alu 1 312 0 12153 173 70 11 chr12 41599275 41601293 -102185162 - L1MA4A LINE L1 -4361 2488 299 1190 100 0 83 chr12 41601295 41601525 -102184930 - Tigger1 DNA MER2_type -504 1914 1704 2230 177 10 0 chr12 41601530 41601925 -102184530 - L1MA4A LINE L1 -6448 401 3 5020 83 18 0 chr12 41601926 41602638 -102183817 - Tigger1 DNA MER2_type -331 2087 1363 4082 171 12 4 chr12 41602637 41603380 -102183075 - Tigger1 DNA MER2_type -1669 749 1 * 939 230 99 9 chr12 41603383 41603726 -102182729 - L1M4 LINE L1 -3049 3097 2724 258 180 0 0 chr12 41603752 41603813 -102182642 + (TA)n Simple_repeat Simple_repeat 1 61 0 2088 146 7 0 chr12 41603825 41604127 -102182328 - AluSx SINE Alu -8 304 1 935 206 5 0 chr12 41604127 41604346 -102182109 - L1M4 LINE L1 -3461 2685 2466 34 24 0 0 chr12 41604716 41604757 -102181698 + AT_rich Low_complexity Low_complexity 1 41 0 222 233 14 27 chr12 41604923 41604996 -102181459 + CT-rich Low_complexity Low_complexity 2 73 0 309 367 8 0 chr12 41605331 41605459 -102180996 - L2 LINE L2 -685 2629 2501 265 384 45 40 chr12 41605465 41605689 -102180766 + L2 LINE L2 3001 3225 -47 2524 51 3 0 chr12 41606222 41606517 -102179938 - AluY SINE Alu -14 297 2 269 391 25 19 chr12 41607806 41607967 -102178488 - MIR SINE MIR -90 172 11 1704 161 29 66 chr12 41608000 41608219 -102178236 - MLT1A1 LTR MaLR 0 365 164 2284 99 0 10 chr12 41608219 41608531 -102177924 - AluSg SINE Alu -1 309 1 1704 161 29 66 chr12 41608531 41608690 -102177765 - MLT1A1 LTR MaLR -201 164 1 2471 58 0 7 chr12 41609267 41609577 -102176878 + AluY SINE Alu 1 308 -3 1562 142 158 28 chr12 41611652 41611975 -102174480 - MLT1A1 LTR MaLR 0 365 1 230 309 25 25 chr12 41613703 41613784 -102172671 + MIR SINE MIR 17 97 -111 280 156 294 28 chr12 41613787 41613896 -102172559 - MER53 DNA DNA -1 188 51 1018 212 27 46 chr12 41615713 41615972 -102170483 + MLT1A1 LTR MaLR 14 267 -98 2288 196 39 83 chr12 41615972 41616537 -102169918 + MLT-int LTR MaLR 355 894 -841 * 2445 238 78 0 chr12 41616532 41617071 -102169384 + MLT1A2-int LTR MaLR 1155 1735 0 299 200 0 0 chr12 41617071 41617121 -102169334 + MLT1A2 LTR MaLR 1 50 -346 7374 196 83 4 chr12 41617135 41618580 -102167875 - MLT1A1-int LTR MaLR -91 1560 2 2792 153 14 2 chr12 41618581 41619007 -102167448 - MSTB1 LTR MaLR 0 432 2 705 210 81 27 chr12 41619077 41619263 -102167192 + MLT1A2 LTR MaLR 179 374 0 302 267 86 26 chr12 41619866 41619982 -102166473 - L2 LINE L2 -14 3258 3136 498 274 206 16 chr12 41620024 41620276 -102166179 - MLT1J2 LTR MaLR 0 450 151 288 0 0 0 chr12 41620470 41620502 -102165953 + (TG)n Simple_repeat Simple_repeat 1 32 0 310 360 15 22 chr12 41620515 41620651 -102165804 - L2 LINE L2 -213 3059 2925 314 313 19 44 chr12 41620664 41620824 -102165631 - L2 LINE L2 0 3313 3158 224 313 100 44 chr12 41621001 41621161 -102165294 - L2 LINE L2 -584 2730 2562 1596 171 42 66 chr12 41621631 41621801 -102164654 + MLT1A2 LTR MaLR 2 175 -199 2417 89 0 6 chr12 41621801 41622116 -102164339 + AluSq SINE Alu 1 313 0 1596 171 42 66 chr12 41622116 41622325 -102164130 + MLT1A2 LTR MaLR 175 372 -2 3065 177 128 7 chr12 41622325 41622935 -102163520 + MLT1A2-int LTR MaLR 2 685 -1050 335 219 0 0 chr12 41623059 41623123 -102163332 + MLT1A2-int LTR MaLR 679 742 -993 928 177 86 65 chr12 41623213 41623445 -102163010 - LTR8A LTR ERV1 -2 725 489 1506 156 3 62 chr12 41623445 41623733 -102162722 - MLT-int LTR MaLR -148 1587 1317 2399 117 19 35 chr12 41623887 41624255 -102162200 + THE1B LTR MaLR 1 362 -2 12234 103 5 4 chr12 41624257 41625835 -102160620 + THE1B-int LTR MaLR 1 1580 0 2299 128 22 35 chr12 41625836 41626204 -102160251 + THE1B LTR MaLR 2 364 0 820 120 24 0 chr12 41626209 41626334 -102160121 + MLT1A2-int LTR MaLR 1488 1615 -120 707 215 73 49 chr12 41626635 41626840 -102159615 - MER63A DNA MER1_type 0 210 1 372 317 5 43 chr12 41626947 41627133 -102159322 + MIR SINE MIR 84 262 0 421 279 110 7 chr12 41627190 41627326 -102159129 - MIR SINE MIR -93 169 20 2536 51 3 0 chr12 41628715 41629011 -102157444 - AluY SINE Alu -13 298 2 1270 223 234 35 chr12 41629533 41630079 -102156376 + L1MC4a LINE L1 5366 6020 -1788 866 238 142 23 chr12 41630096 41630749 -102155706 - L1MD3 LINE L1 -3 7992 7240 1906 168 18 15 chr12 41630812 41631140 -102155315 + MSTB LTR MaLR 1 329 -97 1420 237 92 3 chr12 41631140 41631486 -102154969 + L1MC4 LINE L1 6567 6943 -1099 653 80 45 0 chr12 41631509 41631597 -102154858 + MSTA LTR MaLR 334 425 -3 2489 208 62 6 chr12 41631600 41632128 -102154327 - L1MC4 LINE L1 -1026 7016 6459 209 182 0 0 chr12 41632419 41632452 -102154003 + polypurine Low_complexity Low_complexity 2 34 0 599 262 92 86 chr12 41632749 41632940 -102153515 + L1MC4 LINE L1 6414 6602 -1440 2445 82 10 0 chr12 41632940 41633246 -102153209 + AluY SINE Alu 1 309 -2 599 262 92 86 chr12 41633246 41633808 -102152647 + L1MC4 LINE L1 6602 7159 -883 2188 122 0 0 chr12 41633808 41634102 -102152353 - AluSg SINE Alu -16 294 1 599 262 92 86 chr12 41634102 41634543 -102151912 + L1MC4 LINE L1 7159 7524 -518 2668 143 33 21 chr12 41634543 41634964 -102151491 - MSTA LTR MaLR -2 426 1 599 262 92 86 chr12 41634964 41635267 -102151188 + L1MC4 LINE L1 7524 7824 -218 2403 91 3 0 chr12 41635386 41635693 -102150762 - AluSp SINE Alu -5 308 1 2171 113 17 0 chr12 41635693 41635985 -102150470 - AluSq SINE Alu -15 298 1 1377 144 35 31 chr12 41636150 41636407 -102150048 - L1MC1 LINE L1 0 6333 6076 450 259 0 28 chr12 41636443 41636551 -102149904 - L2 LINE L2 -9 3304 3200 22 0 0 0 chr12 41637915 41637937 -102148518 + AT_rich Low_complexity Low_complexity 1 22 0 2084 106 3 40 chr12 41638290 41638591 -102147864 + AluSq SINE Alu 1 290 -23 26 0 0 0 chr12 41638594 41638620 -102147835 + AT_rich Low_complexity Low_complexity 1 26 0 468 229 9 0 chr12 41638713 41638818 -102147637 + MIR SINE MIR 96 201 -61 300 277 21 43 chr12 41640435 41640529 -102145926 - L2 LINE L2 -2 3270 3179 421 297 58 14 chr12 41640674 41640812 -102145643 + MIR3 SINE MIR 33 176 -32 210 313 27 27 chr12 41640923 41641035 -102145420 - MIR SINE MIR -75 187 76 355 250 92 92 chr12 41641136 41641364 -102145091 - MIR SINE MIR -7 255 28 298 230 185 22 chr12 41642308 41642443 -102144012 - MIR3 SINE MIR -15 193 37 2015 68 0 4 chr12 41642799 41643048 -102143407 + AluY SINE Alu 60 307 -4 272 284 122 14 chr12 41643098 41643246 -102143209 - L1MC4a LINE L1 -1899 5909 5746 375 288 43 113 chr12 41643746 41644003 -102142452 - L2 LINE L2 -2 3270 3032 2195 110 27 3 chr12 41644267 41644567 -102141888 - AluSx SINE Alu -5 307 1 192 125 0 0 chr12 41644899 41644931 -102141524 + (GGA)n Simple_repeat Simple_repeat 1 32 0 291 203 0 0 chr12 41645083 41645147 -102141308 + GA-rich Low_complexity Low_complexity 2 65 0 612 265 124 8 chr12 41645777 41646011 -102140444 + MIR SINE MIR 2 262 0 2979 267 140 44 chr12 41646029 41647398 -102139057 + L2 LINE L2 1559 3121 -192 2088 122 10 13 chr12 41647398 41647701 -102138754 + AluSx SINE Alu 1 302 -10 2979 267 140 44 chr12 41647701 41647915 -102138540 + L2 LINE L2 3121 3313 0 1750 140 33 0 chr12 41648268 41648539 -102137916 + AluJb SINE Alu 1 280 -32 503 242 74 19 chr12 41649725 41649748 -102136707 - Charlie7 DNA MER1_type 0 2612 2592 913 85 78 16 chr12 41649748 41649877 -102136578 + MER85 DNA T2_type 1 137 -2 503 242 74 19 chr12 41649877 41650068 -102136387 - Charlie7 DNA MER1_type -20 2592 2386 1689 235 109 59 chr12 41650090 41650788 -102135667 - Charlie7 DNA MER1_type -1873 739 7 395 248 45 15 chr12 41650851 41650984 -102135471 + MER113 DNA MER1_type? 8 144 -377 2405 91 0 0 chr12 41651335 41651644 -102134811 - AluY SINE Alu -2 309 1 280 208 52 39 chr12 41652111 41652188 -102134267 + MLT1H LTR MaLR 156 233 -316 321 263 0 59 chr12 41652193 41652311 -102134144 + CT-rich Low_complexity Low_complexity 5 115 0 591 238 41 23 chr12 41652430 41652602 -102133853 + MLT1H LTR MaLR 375 549 0 908 61 9 0 chr12 41652692 41652807 -102133648 - L1MA2 LINE L1 0 6304 6189 23 33 0 0 chr12 41653827 41653857 -102132598 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr12 41654960 41654981 -102131474 + (TAGGG)n Simple_repeat Simple_repeat 3 23 0 280 271 116 47 chr12 41654989 41655118 -102131337 - L2 LINE L2 -1 3312 3175 459 276 136 4 chr12 41655707 41655847 -102130608 + MIR SINE MIR 5 125 -137 2063 128 73 73 chr12 41655847 41656231 -102130224 + MLT1B LTR MaLR 4 387 -3 459 276 136 4 chr12 41656231 41656318 -102130137 + MIR SINE MIR 125 262 0 955 266 91 63 chr12 41657284 41657746 -102128709 + MLT1H LTR MaLR 75 549 0 6215 181 40 14 chr12 41657757 41659962 -102126493 + L1MB7 LINE L1 3907 6172 -12 2087 115 0 7 chr12 41659962 41660258 -102126197 - AluSx SINE Alu -6 306 13 369 185 0 0 chr12 41660298 41660363 -102126092 + MER41A LTR ERV1 398 462 -92 2152 126 0 0 chr12 41661270 41661564 -102124891 - AluSx SINE Alu -14 298 5 568 163 0 0 chr12 41662079 41662177 -102124278 + L1MA4 LINE L1 6197 6294 -6 2108 175 11 6 chr12 41662274 41662628 -102123827 + MLT1A1 LTR MaLR 10 365 0 845 301 42 0 chr12 41662821 41663060 -102123395 + MIR SINE MIR 14 262 0 1654 242 114 31 chr12 41663846 41664388 -102122067 + MLT1E LTR MaLR 3 589 -4 219 402 40 11 chr12 41664544 41664718 -102121737 + MIR SINE MIR 34 212 -50 24 67 0 0 chr12 41664752 41664797 -102121658 + AT_rich Low_complexity Low_complexity 1 45 0 974 161 67 17 chr12 41665352 41665532 -102120923 - MER53 DNA DNA 0 189 1 405 200 186 35 chr12 41665743 41665888 -102120567 - MER21B LTR ERV1 -1 862 696 1999 129 3 3 chr12 41665889 41666176 -102120279 + AluJb SINE Alu 1 287 -25 830 266 59 46 chr12 41666386 41666555 -102119900 + MLT1J LTR MaLR 1 177 -334 1819 138 37 34 chr12 41666555 41666851 -102119604 + AluSx SINE Alu 1 297 -15 830 266 59 46 chr12 41666851 41666985 -102119470 + MLT1J LTR MaLR 177 308 -203 479 241 85 39 chr12 41667095 41667184 -102119271 - MLT1J LTR MaLR -297 176 93 2329 63 0 10 chr12 41667184 41667483 -102118972 + AluY SINE Alu 1 296 -15 479 241 85 39 chr12 41667483 41667573 -102118882 - MLT1J LTR MaLR -380 93 3 190 81 54 0 chr12 41667785 41667822 -102118633 + (TTAAA)n Simple_repeat Simple_repeat 1 39 0 546 71 0 59 chr12 41671370 41671455 -102115000 - MADE1 DNA Mariner 0 80 1 180 321 18 18 chr12 41672530 41672586 -102113869 + MIR SINE MIR 32 87 -121 288 0 0 0 chr12 41672711 41672743 -102113712 + (CA)n Simple_repeat Simple_repeat 1 32 0 252 338 103 14 chr12 41672916 41673061 -102113394 - MIR3 SINE MIR -33 175 18 419 313 45 19 chr12 41673764 41674074 -102112381 - L1ME4a LINE L1 -207 5914 5597 3367 128 68 0 chr12 41674175 41674704 -102111751 - MER61E LTR ERV1 -4 565 1 758 289 34 21 chr12 41674745 41674984 -102111471 - MIR SINE MIR -1 261 20 2195 125 3 6 chr12 41675080 41675393 -102111062 - AluSx SINE Alu 0 312 1 688 288 79 15 chr12 41675953 41676293 -102110162 - L1ME4a LINE L1 -221 5900 5539 242 253 32 11 chr12 41676333 41676428 -102110027 - L1P5 LINE L1 -688 5468 5372 2431 168 36 5 chr12 41677507 41677954 -102108501 - LOR1b LTR ERV1 0 461 1 1454 166 94 38 chr12 41678112 41678377 -102108078 - AluJo SINE Alu -22 290 11 23 0 0 0 chr12 41678676 41678699 -102107756 + AT_rich Low_complexity Low_complexity 1 23 0 233 234 26 0 chr12 41679064 41679141 -102107314 + MER116 DNA Mariner 2 80 0 446 353 47 13 chr12 41679551 41679786 -102106669 + L3b LINE CR1 1109 1351 -232 4224 170 34 16 chr12 41680155 41680837 -102105618 - L1MB5 LINE L1 -9 6165 5463 1630 151 72 41 chr12 41680837 41681128 -102105327 - AluJb SINE Alu -12 300 1 4224 170 34 16 chr12 41681128 41681308 -102105147 - L1MB5 LINE L1 -711 5463 5288 636 247 11 55 chr12 41681423 41681605 -102104850 - MER5A DNA MER1_type -3 186 13 273 191 73 44 chr12 41681996 41682064 -102104391 - MIR SINE MIR 0 262 193 1173 141 14 0 chr12 41682065 41682278 -102104177 - L1MD3 LINE L1 0 7995 7780 3793 120 9 0 chr12 41682326 41682910 -102103545 + Tigger1 DNA MER2_type 309 897 -1521 2988 152 19 15 chr12 41682904 41683445 -102103010 + Tigger1 DNA MER2_type 1876 2418 0 * 1017 192 13 4 chr12 41683445 41683674 -102102781 - L1MD3 LINE L1 -361 7634 7404 450 187 10 1 chr12 41683674 41683761 -102102694 - MLT1F1 LTR MaLR -383 166 49 981 149 41 98 chr12 41683764 41684041 -102102414 - L1MC3 LINE L1 -687 7107 6854 578 162 38 9 chr12 41684041 41684146 -102102309 - MIR SINE MIR -45 217 110 916 214 47 12 chr12 41685389 41685628 -102100827 - MIR SINE MIR -1 261 19 2024 153 0 13 chr12 41685650 41685957 -102100498 - AluSx SINE Alu -9 303 1 200 273 23 23 chr12 41687918 41688006 -102098449 + CT-rich Low_complexity Low_complexity 5 92 0 675 276 34 46 chr12 41689018 41689066 -102097389 - MLT1F LTR MaLR -306 236 189 387 41 0 0 chr12 41689066 41689115 -102097340 + (GA)n Simple_repeat Simple_repeat 1 49 0 675 276 34 46 chr12 41689115 41689305 -102097150 - MLT1F LTR MaLR -353 189 1 263 186 98 59 chr12 41689406 41689508 -102096947 + MLT2E LTR ERVL 35 140 -488 877 230 111 0 chr12 41689860 41690086 -102096369 + MIR SINE MIR 1 251 -11 284 0 0 27 chr12 41690088 41690125 -102096330 + (TTA)n Simple_repeat Simple_repeat 2 37 0 868 333 68 51 chr12 41691270 41692099 -102094356 + L2 LINE L2 2273 3121 -151 1670 82 124 47 chr12 41692099 41692387 -102094068 - AluSx SINE Alu 0 312 5 868 333 68 51 chr12 41692387 41692542 -102093913 + L2 LINE L2 3121 3272 0 253 232 43 0 chr12 41692556 41692625 -102093830 + MIR SINE MIR 175 246 -16 1096 211 53 51 chr12 41693234 41693684 -102092771 - L1MC5 LINE L1 -95 7866 7416 1011 58 11 63 chr12 41694029 41694219 -102092236 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1919 174 7 0 chr12 41694234 41694544 -102091911 - AluSx SINE Alu 0 312 1 568 266 69 17 chr12 41695536 41695709 -102090746 + MIR SINE MIR 70 251 -11 361 367 109 27 chr12 41696199 41696346 -102090109 + L2 LINE L2 3110 3268 -4 196 268 73 106 chr12 41696317 41696563 -102089892 - L2 LINE L2 -984 2330 2093 * 442 267 62 7 chr12 41696565 41696711 -102089744 - MLT1I LTR MaLR 0 409 256 13004 213 20 27 chr12 41697389 41702513 -102083942 + L1M2 LINE L1 1 5159 -1689 432 0 0 0 chr12 41702513 41702561 -102083894 + (CA)n Simple_repeat Simple_repeat 2 49 0 13004 213 20 27 chr12 41702561 41702894 -102083561 + L1M2 LINE L1 5159 5493 -1355 1388 218 0 31 chr12 41702894 41703187 -102083268 + AluJo SINE Alu 3 286 -16 13004 213 20 27 chr12 41703187 41703825 -102082630 + L1M2 LINE L1 5493 6054 -794 1118 119 0 6 chr12 41703930 41704106 -102082349 - MSTA LTR MaLR -253 175 1 483 175 29 10 chr12 41704106 41704209 -102082246 - MLT1A1 LTR MaLR -260 105 1 292 81 81 65 chr12 41704281 41704343 -102082112 + L1MDa LINE L1 42 104 -6436 243 0 0 0 chr12 41704343 41704370 -102082085 + (TA)n Simple_repeat Simple_repeat 1 27 0 351 0 0 0 chr12 41704370 41704409 -102082046 + (CA)n Simple_repeat Simple_repeat 2 40 0 208 156 0 0 chr12 41704409 41704441 -102082014 + (TA)n Simple_repeat Simple_repeat 2 33 0 230 77 0 0 chr12 41704442 41704481 -102081974 - LTR66 LTR ERVL -174 436 398 510 276 0 0 chr12 41704481 41704796 -102081659 + (TA)n Simple_repeat Simple_repeat 1 315 0 255 274 24 0 chr12 41704797 41704881 -102081574 - L1MC4 LINE L1 -1339 6703 6618 300 311 0 0 chr12 41704892 41704982 -102081473 - L1MC4 LINE L1 -1340 6702 6613 305 333 0 0 chr12 41704987 41705077 -102081378 + L1MC4 LINE L1 6614 6703 -1339 * 338 275 0 22 chr12 41705047 41705138 -102081317 - L1MC4 LINE L1 -1339 6703 6615 504 228 0 24 chr12 41705176 41705424 -102081031 + (TA)n Simple_repeat Simple_repeat 1 241 0 225 326 0 0 chr12 41705425 41705514 -102080941 + L1MC4 LINE L1 6614 6702 -1340 262 261 14 0 chr12 41705515 41705584 -102080871 + (TA)n Simple_repeat Simple_repeat 2 71 0 310 340 0 0 chr12 41705584 41705678 -102080777 - L1MC4 LINE L1 -1335 6707 6614 450 311 2 5 chr12 41705690 41706314 -102080141 + (TA)n Simple_repeat Simple_repeat 1 621 0 3067 240 106 24 chr12 41706321 41706487 -102079968 + L1MDa LINE L1 177 328 -6212 2183 116 7 7 chr12 41706487 41706797 -102079658 - AluSq SINE Alu -3 310 1 3067 240 106 24 chr12 41706797 41707566 -102078889 + L1MDa LINE L1 328 1189 -5351 2378 109 26 13 chr12 41707567 41707951 -102078504 + L1PA13 LINE L1 5775 6163 0 13499 189 25 20 chr12 41707973 41709717 -102076738 + L1PB1 LINE L1 6 1739 -5128 333 0 0 0 chr12 41709717 41709754 -102076701 + (CA)n Simple_repeat Simple_repeat 2 38 0 13499 189 25 20 chr12 41709754 41714497 -102071958 + L1PB1 LINE L1 1739 6854 -13 204 53 35 105 chr12 41714522 41714579 -102071876 + (TAAAA)n Simple_repeat Simple_repeat 2 54 0 4741 183 91 33 chr12 41714604 41715240 -102071215 + L1MDa LINE L1 1179 1777 -4763 2186 99 0 18 chr12 41715240 41715524 -102070931 + AluSx SINE Alu 10 288 -24 4741 183 91 33 chr12 41715524 41716781 -102069674 + L1MDa LINE L1 1777 3177 -3363 1918 249 49 100 chr12 41716777 41717720 -102068735 + L1MDa LINE L1 3648 4542 -1998 * 885 117 82 0 chr12 41717781 41717952 -102068503 + L1MCa LINE L1 1153 1337 -5089 2687 121 5 3 chr12 41718049 41718438 -102068017 - MLT1B LTR MaLR 0 390 1 36 62 0 0 chr12 41718852 41718916 -102067539 + AT_rich Low_complexity Low_complexity 1 64 0 251 33 66 49 chr12 41721356 41721417 -102065038 + T-rich Low_complexity Low_complexity 3 64 0 1168 144 0 6 chr12 41721419 41721593 -102064862 - AluSg/x SINE Alu -19 293 121 1953 136 18 0 chr12 41721595 41721874 -102064581 - AluSx SINE Alu -28 284 1 1977 137 3 3 chr12 41723081 41723374 -102063081 - AluSx SINE Alu -19 293 1 283 267 47 0 chr12 41723643 41723729 -102062726 + MIR SINE MIR 173 262 0 219 318 79 0 chr12 41723982 41724045 -102062410 - L2 LINE L2 -1 3271 3204 901 251 26 52 chr12 41724118 41724521 -102061934 - MLT1A1 LTR MaLR -11 367 1 2359 107 0 0 chr12 41724784 41725092 -102061363 + AluSx SINE Alu 1 308 -4 21 71 0 0 chr12 41725290 41725332 -102061123 + AT_rich Low_complexity Low_complexity 1 42 0 1797 159 78 23 chr12 41726721 41727067 -102059388 - MLT1A1 LTR MaLR 0 365 1 378 318 142 42 chr12 41727911 41728222 -102058233 + L2 LINE L2 2931 3272 0 1906 128 11 4 chr12 41728285 41728566 -102057889 + AluSx SINE Alu 18 300 -12 464 327 16 28 chr12 41728597 41728773 -102057682 + MIR SINE MIR 1 181 -27 261 349 69 32 chr12 41728801 41729148 -102057307 + L2 LINE L2 2827 3186 -86 812 175 30 90 chr12 41730365 41730565 -102055890 + MER69 DNA AcHobo 6 193 -1033 1008 279 102 12 chr12 41730613 41730936 -102055519 + MER69 DNA AcHobo 303 654 -572 594 201 43 0 chr12 41730948 41731087 -102055368 + MER69 DNA AcHobo 2005 2149 -377 526 345 144 10 chr12 41731638 41732041 -102054414 + L2 LINE L2 2497 2953 -361 448 246 35 18 chr12 41732140 41732254 -102054201 + L2 LINE L2 3197 3312 -1 486 288 102 22 chr12 41732713 41732939 -102053516 - MIR SINE MIR -17 245 2 446 268 86 9 chr12 41733078 41733220 -102053235 - MIR SINE MIR -46 162 12 190 270 79 11 chr12 41733413 41733502 -102052953 + MIR SINE MIR 69 163 -99 1817 155 72 40 chr12 41733539 41733888 -102052567 - MLT1A1 LTR MaLR -5 360 1 238 324 46 37 chr12 41734318 41734426 -102052029 - L2 LINE L2 -8 3305 3197 527 206 12 12 chr12 41735501 41735661 -102050794 + MER113 DNA MER1_type? 12 171 -350 22 35 0 0 chr12 41735698 41735727 -102050728 + AT_rich Low_complexity Low_complexity 1 29 0 2428 46 0 3 chr12 41735754 41736061 -102050394 + AluY SINE Alu 1 306 0 243 270 27 27 chr12 41736209 41736283 -102050172 - MIR SINE MIR 0 262 189 845 280 152 55 chr12 41736388 41736738 -102049717 - L2 LINE L2 0 3313 2908 2151 90 0 75 chr12 41736738 41737060 -102049395 - AluSq SINE Alu -12 301 4 845 280 152 55 chr12 41737060 41737163 -102049292 - L2 LINE L2 -405 2908 2816 34 34 0 17 chr12 41737242 41737276 -102049179 + AT_rich Low_complexity Low_complexity 1 35 -23 1706 161 47 20 chr12 41737276 41737574 -102048881 - AluJb SINE Alu -6 306 1 34 34 0 17 chr12 41737574 41737598 -102048857 + AT_rich Low_complexity Low_complexity 35 58 0 295 360 96 13 chr12 41737949 41738188 -102048267 + L2 LINE L2 2838 3096 -176 793 186 60 12 chr12 41738264 41738431 -102048024 + MIR SINE MIR 13 187 -75 227 200 29 14 chr12 41738456 41738526 -102047929 + (TTTAA)n Simple_repeat Simple_repeat 1 71 0 189 268 0 0 chr12 41738526 41738567 -102047888 + MIR SINE MIR 222 262 0 690 175 37 38 chr12 41739179 41739375 -102047080 - MER6 DNA MER2_type 0 865 -65 2012 87 8 4 chr12 41739594 41739859 -102046596 + AluSp SINE Alu 36 301 -12 21 0 0 0 chr12 41740817 41740838 -102045617 + AT_rich Low_complexity Low_complexity 1 21 0 181 326 124 10 chr12 41742298 41742491 -102043964 - L2 LINE L2 -337 2977 2763 22 56 0 0 chr12 41742782 41742818 -102043637 + AT_rich Low_complexity Low_complexity 1 36 0 207 280 0 0 chr12 41743638 41743688 -102042767 + GA-rich Low_complexity Low_complexity 4 53 0 244 292 154 23 chr12 41744126 41744256 -102042199 - MIR SINE MIR -113 149 3 2451 89 0 3 chr12 41744807 41745120 -102041335 + AluSq SINE Alu 1 312 -1 258 297 95 20 chr12 41745332 41745480 -102040975 + L1ME3A LINE L1 5989 6147 -23 189 0 0 0 chr12 41745731 41745752 -102040703 + (A)n Simple_repeat Simple_repeat 1 21 0 680 115 0 10 chr12 41745792 41745896 -102040559 + L1PA6 LINE L1 2 104 -6042 * 31821 68 7 7 chr12 41745880 41751055 -102035400 + L1PA6 LINE L1 979 6153 -1 21 57 0 0 chr12 41751271 41751306 -102035149 + AT_rich Low_complexity Low_complexity 1 35 0 313 288 209 7 chr12 41751575 41751714 -102034741 - MIR SINE MIR -31 231 65 2064 144 52 8 chr12 41751753 41752134 -102034321 + L1MB3 LINE L1 5786 6183 0 330 273 153 3 chr12 41752140 41752422 -102034033 + L1M4 LINE L1 2976 3299 -2847 204 111 0 0 chr12 41752597 41752633 -102033822 + (A)n Simple_repeat Simple_repeat 1 36 0 421 243 54 49 chr12 41752839 41753024 -102033431 + LTR45B LTR ERV1 304 489 0 400 194 222 40 chr12 41754090 41754338 -102032117 + L1MC5 LINE L1 7639 7931 -30 245 277 46 0 chr12 41755001 41755066 -102031389 + L2 LINE L2 3246 3313 0 794 241 121 38 chr12 41756579 41756743 -102029712 + Charlie4 DNA MER1_type 1 197 -311 2255 111 0 0 chr12 41756743 41757041 -102029414 + AluSx SINE Alu 1 298 -14 794 241 121 38 chr12 41757041 41757141 -102029314 + Charlie4 DNA MER1_type 197 287 -221 700 194 113 22 chr12 41757521 41757743 -102028712 + Charlie4 DNA MER1_type 1719 1960 -1 390 42 0 0 chr12 41758176 41758224 -102028231 + (CA)n Simple_repeat Simple_repeat 2 49 0 23 33 0 0 chr12 41758580 41758610 -102027845 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr12 41759320 41759344 -102027111 + AT_rich Low_complexity Low_complexity 1 24 0 1533 137 8 30 chr12 41759880 41760143 -102026312 + L1PA16 LINE L1 5900 6156 -10 21 0 0 0 chr12 41760143 41760164 -102026291 + AT_rich Low_complexity Low_complexity 1 21 0 352 205 13 51 chr12 41760188 41760266 -102026189 - L2 LINE L2 -2 3311 3237 1763 172 7 0 chr12 41760994 41761279 -102025176 - AluSx SINE Alu -19 293 7 2266 104 3 3 chr12 41761406 41761714 -102024741 + AluSx SINE Alu 1 308 -4 292 287 175 0 chr12 41761830 41761973 -102024482 - MIR SINE MIR -44 218 51 23 68 0 0 chr12 41762290 41762334 -102024121 + AT_rich Low_complexity Low_complexity 1 44 0 12655 126 107 21 chr12 41762456 41763391 -102023064 - Tigger1 DNA MER2_type -9 2409 1556 2193 50 4 0 chr12 41763391 41763652 -102022803 - AluY SINE Alu -10 301 40 12655 126 107 21 chr12 41763652 41764520 -102021935 - Tigger1 DNA MER2_type -862 1556 375 2093 113 0 3 chr12 41764520 41764827 -102021628 - AluSx SINE Alu 0 306 1 12655 126 107 21 chr12 41764827 41765237 -102021218 - Tigger1 DNA MER2_type -2043 375 2 278 361 78 0 chr12 41765237 41765481 -102020974 + L1ME3A LINE L1 4030 4292 -1854 739 275 48 20 chr12 41765646 41766002 -102020453 + L1ME3A LINE L1 4561 4926 -1220 455 256 69 73 chr12 41766021 41766707 -102019748 + L1ME3A LINE L1 5006 5706 -456 181 212 45 0 chr12 41766740 41766806 -102019649 + GA-rich Low_complexity Low_complexity 4 72 0 306 282 80 28 chr12 41766806 41767019 -102019436 + L1ME3A LINE L1 5733 5956 -214 448 150 0 0 chr12 41768102 41768171 -102018284 + Tigger2 DNA MER2_type 1 69 -2649 * 2228 126 69 32 chr12 41768155 41768591 -102017864 + Tigger2 DNA MER2_type 2267 2718 0 642 225 203 0 chr12 41768918 41769105 -102017350 - MIR SINE MIR -36 226 2 510 228 63 0 chr12 41769811 41769938 -102016517 - MIR SINE MIR -65 197 63 1835 174 7 0 chr12 41770157 41770451 -102016004 - AluJb SINE Alu -9 303 8 21 0 0 0 chr12 41770562 41770583 -102015872 + AT_rich Low_complexity Low_complexity 1 21 0 233 191 0 0 chr12 41770860 41770902 -102015553 + L2 LINE L2 3272 3313 0 1191 227 151 2 chr12 41771212 41771635 -102014820 + L1ME3 LINE L1 5559 6044 -118 994 77 0 0 chr12 41771635 41771765 -102014690 - AluSg/x SINE Alu -7 303 174 435 252 43 0 chr12 41771767 41771882 -102014573 + L1ME3 LINE L1 6041 6160 -2 718 213 257 24 chr12 41772578 41772827 -102013628 + L1MD2 LINE L1 5980 6286 -73 2336 81 0 32 chr12 41773910 41774218 -102012237 + AluSc SINE Alu 1 298 -11 23 0 0 0 chr12 41774641 41774664 -102011791 + AT_rich Low_complexity Low_complexity 1 23 0 183 303 187 27 chr12 41774839 41774961 -102011494 - L2 LINE L2 -23 3290 3189 1072 183 28 19 chr12 41774961 41775174 -102011281 - MER20 DNA MER1_type 0 219 5 183 303 187 27 chr12 41775174 41775345 -102011110 - L2 LINE L2 -124 3189 2950 2463 71 0 29 chr12 41776016 41776324 -102010131 - AluSx SINE Alu -13 299 1 1318 153 38 46 chr12 41776365 41776627 -102009828 + AluJo SINE Alu 1 260 -52 528 259 58 40 chr12 41778456 41778515 -102007940 - MER5B DNA MER1_type 0 178 122 546 29 0 0 chr12 41778515 41778583 -102007872 + (TG)n Simple_repeat Simple_repeat 2 69 0 528 259 58 40 chr12 41778583 41778697 -102007758 - MER5B DNA MER1_type -56 122 2 24 32 0 0 chr12 41778892 41778923 -102007532 + AT_rich Low_complexity Low_complexity 1 31 0 1740 244 102 2 chr12 41779686 41780136 -102006319 - MLT1J LTR MaLR -14 497 3 274 253 224 24 chr12 41780240 41780410 -102006045 + MIR SINE MIR 57 260 -2 449 301 70 0 chr12 41780686 41780829 -102005626 - MIR SINE MIR -108 154 2 182 250 0 36 chr12 41782086 41782142 -102004313 - MIR SINE MIR -57 151 98 245 295 162 0 chr12 41783110 41783215 -102003240 - MIR3 SINE MIR -50 158 37 1122 288 70 19 chr12 41785170 41785645 -102000810 - L2 LINE L2 -5 3308 2810 562 271 58 38 chr12 41785708 41785948 -102000507 - MIR SINE MIR -13 249 5 1073 264 76 43 chr12 41785965 41786476 -101999979 - L2 LINE L2 -562 2752 2225 394 231 87 0 chr12 41786690 41786794 -101999661 - MIR SINE MIR -117 145 33 341 267 52 9 chr12 41786954 41787070 -101999385 + MIR SINE MIR 20 140 -68 878 218 11 0 chr12 41788932 41789111 -101997344 - MER5A DNA MER1_type -4 185 5 188 262 197 25 chr12 41789404 41789526 -101996929 - L3b LINE CR1 -124 1459 1317 298 239 14 0 chr12 41790629 41790700 -101995755 - L2 LINE L2 0 3272 3201 2395 103 22 6 chr12 41791071 41791429 -101995026 + THE1B LTR MaLR 1 364 0 478 368 13 0 chr12 41791504 41791656 -101994799 - MER91A DNA MER1_type -24 172 19 678 210 48 24 chr12 41792824 41792991 -101993464 - Charlie8 DNA MER1_type -2140 277 107 1159 238 8 4 chr12 41793931 41794187 -101992268 + MIR SINE MIR 1 257 -5 291 250 28 0 chr12 41798166 41798238 -101988217 + MIR3 SINE MIR 94 167 -41 2028 119 36 7 chr12 41798440 41798718 -101987737 - AluSx SINE Alu -26 286 1 778 252 104 9 chr12 41799274 41799504 -101986951 - MIR SINE MIR -9 253 2 270 299 65 0 chr12 41799582 41799689 -101986766 - L3 LINE CR1 -20 1557 1444 297 0 0 0 chr12 41799899 41799932 -101986523 + (CA)n Simple_repeat Simple_repeat 2 34 0 297 0 0 0 chr12 41799935 41799968 -101986487 + (GA)n Simple_repeat Simple_repeat 2 34 0 197 302 0 19 chr12 41800340 41800393 -101986062 - L2 LINE L2 -4 3309 3258 263 222 34 34 chr12 41801051 41801168 -101985287 + L2 LINE L2 2941 3057 -215 279 279 25 0 chr12 41802277 41802356 -101984099 - L2 LINE L2 -1 3312 3232 941 249 60 20 chr12 41802415 41802664 -101983791 + MIR SINE MIR 2 260 -2 2295 114 0 9 chr12 41802748 41803063 -101983392 + AluSx SINE Alu 1 312 0 2467 74 7 0 chr12 41803071 41803367 -101983088 + AluY SINE Alu 1 298 -13 240 219 27 68 chr12 41804360 41804433 -101982022 - MIR3 SINE MIR -49 159 90 1394 161 135 26 chr12 41805676 41805943 -101980512 - AluJo SINE Alu -16 296 1 339 219 140 53 chr12 41806154 41806268 -101980187 + MIR SINE MIR 65 188 -74 203 300 131 19 chr12 41807762 41807869 -101978586 - MIR SINE MIR -69 139 35 300 215 25 0 chr12 41810701 41810780 -101975675 + GA-rich Low_complexity Low_complexity 1 81 0 195 204 0 0 chr12 41811131 41811185 -101975270 + CT-rich Low_complexity Low_complexity 2 55 0 279 304 71 0 chr12 41813477 41813589 -101972866 + MIR SINE MIR 87 206 -56 228 264 114 36 chr12 41813809 41813976 -101972479 + Charlie7 DNA MER1_type 2433 2612 0 249 83 0 0 chr12 41813982 41814018 -101972437 + L2 LINE L2 3261 3296 -17 847 245 50 12 chr12 41814269 41814510 -101971945 - MIR SINE MIR -12 250 1 315 282 24 0 chr12 41814510 41814591 -101971864 + L2 LINE L2 3230 3312 -1 378 255 85 39 chr12 41814598 41814751 -101971704 + MIR SINE MIR 41 200 -62 940 264 33 0 chr12 41814763 41815005 -101971450 - MIR SINE MIR 0 262 13 619 234 114 0 chr12 41816046 41816253 -101970202 - MIR SINE MIR -23 239 1 278 365 17 0 chr12 41816980 41817095 -101969360 + L2 LINE L2 2692 2808 -506 405 331 86 0 chr12 41817599 41817877 -101968578 - L2 LINE L2 -130 3183 2882 260 309 15 0 chr12 41819075 41819143 -101967312 - MIR SINE MIR -184 78 10 308 302 21 0 chr12 41820193 41820289 -101966166 - MER117 DNA MER1_type 0 197 100 475 261 144 50 chr12 41822197 41822419 -101964036 - MIR SINE MIR -6 256 14 359 228 32 57 chr12 41822428 41822551 -101963904 - MIR3 SINE MIR -21 187 68 809 261 22 35 chr12 41824131 41824361 -101962094 + MIR SINE MIR 8 234 -28 218 250 0 17 chr12 41825396 41825456 -101960999 + (CCCCAG)n Simple_repeat Simple_repeat 6 64 0 207 221 206 15 chr12 41825596 41825664 -101960791 - MIR3 SINE MIR -29 179 99 406 310 110 0 chr12 41825710 41825865 -101960590 - MIR SINE MIR -90 172 1 333 258 41 10 chr12 41825943 41826040 -101960415 + MER103 DNA DNA 1 100 -66 952 232 29 37 chr12 41826088 41826334 -101960121 + MIR SINE MIR 13 256 -6 1108 249 12 12 chr12 41826787 41827036 -101959419 + MIR SINE MIR 14 262 0 257 264 74 81 chr12 41827219 41827367 -101959088 - L3b LINE CR1 -147 1436 1290 2124 130 0 0 chr12 41828335 41828643 -101957812 + AluSc SINE Alu 1 308 -1 725 148 0 0 chr12 41828659 41828767 -101957688 + FLAM_C SINE Alu 2 109 -34 235 307 160 33 chr12 41831746 41831896 -101954559 - MER5A DNA MER1_type -20 169 1 558 240 70 0 chr12 41832268 41832397 -101954058 - MIR SINE MIR -25 237 100 357 212 18 44 chr12 41832657 41832770 -101953685 - HAL1 LINE L1 -1029 1478 1369 770 138 0 0 chr12 41832770 41832893 -101953562 - AluSg/x SINE Alu -2 310 188 863 179 22 34 chr12 41832895 41833074 -101953381 + AluSx SINE Alu 3 179 -133 312 264 132 22 chr12 41833840 41834022 -101952433 + L2 LINE L2 2556 2757 -557 1568 118 0 111 chr12 41834128 41834294 -101952161 - AluY SINE Alu -6 295 183 414 0 0 0 chr12 41834294 41834340 -101952115 + (TA)n Simple_repeat Simple_repeat 1 46 0 1568 118 0 111 chr12 41834340 41834505 -101951950 - AluY SINE Alu -118 183 1 268 331 71 4 chr12 41834633 41834899 -101951556 - AluY SINE Alu -14 287 4 262 398 25 19 chr12 41836242 41836403 -101950052 - MIR SINE MIR -90 172 11 1744 166 29 66 chr12 41836436 41836655 -101949800 - MLT1A1 LTR MaLR 0 365 164 2175 99 0 10 chr12 41836655 41836967 -101949488 - AluSg SINE Alu -1 309 1 1744 166 29 66 chr12 41836967 41837126 -101949329 - MLT1A1 LTR MaLR -201 164 1 2371 61 0 7 chr12 41837703 41838013 -101948442 + AluY SINE Alu 1 308 -3 233 231 108 0 chr12 41839806 41839871 -101946584 + MIR SINE MIR 176 247 -15 215 163 47 0 chr12 41840644 41840687 -101945768 + (TGG)n Simple_repeat Simple_repeat 1 45 0 180 111 0 0 chr12 41840688 41840715 -101945740 + (TG)n Simple_repeat Simple_repeat 1 27 0 25 75 0 0 chr12 41842254 41842307 -101944148 + GC_rich Low_complexity Low_complexity 1 53 0 216 0 0 0 chr12 41842724 41842748 -101943707 + (CAA)n Simple_repeat Simple_repeat 2 25 0 376 322 86 11 chr12 41843734 41843908 -101942547 - MIR3 SINE MIR -13 195 9 296 260 39 0 chr12 41845634 41845711 -101940744 + MIR SINE MIR 68 147 -115 261 252 92 17 chr12 41846172 41846291 -101940164 + L2 LINE L2 1922 2049 -1265 293 252 58 58 chr12 41846378 41846517 -101939938 + MIR3 SINE MIR 58 196 -12 364 267 11 11 chr12 41846630 41846720 -101939735 - MIR3 SINE MIR -29 179 90 4630 248 58 65 chr12 41849028 41851789 -101934666 + L1ME3 LINE L1 3339 6081 -81 2112 96 4 0 chr12 41852258 41852538 -101933917 + AluSx SINE Alu 9 289 -23 210 71 0 0 chr12 41852822 41852850 -101933605 + (TA)n Simple_repeat Simple_repeat 1 28 0 2181 80 3 20 chr12 41852870 41853169 -101933286 - AluY SINE Alu -17 294 1 25 0 0 0 chr12 41853725 41853750 -101932705 + AT_rich Low_complexity Low_complexity 1 25 0 181 379 0 0 chr12 41854092 41854150 -101932305 - L2 LINE L2 -9 3263 3206 321 385 21 21 chr12 41854190 41854382 -101932073 - MIR SINE MIR -50 212 21 225 293 126 11 chr12 41855035 41855209 -101931246 - L1MC/D LINE L1 -2264 5544 5351 556 184 156 0 chr12 41855360 41855469 -101930986 + AluJb SINE Alu 2 127 -185 281 224 0 0 chr12 41855887 41855936 -101930519 + MER5B DNA MER1_type 1 49 -129 218 293 13 27 chr12 41856240 41856315 -101930140 - L2 LINE L2 -2 3270 3197 * 521 293 0 60 chr12 41856306 41856473 -101929982 + MER5B DNA MER1_type 22 178 0 1471 203 15 6 chr12 41857982 41858307 -101928148 - L1MB3 LINE L1 -1 6182 5855 325 304 30 30 chr12 41859882 41860017 -101926438 - MIR SINE MIR -3 259 125 1102 110 7 0 chr12 41860302 41860456 -101925999 + AluSq SINE Alu 1 155 -158 544 145 0 0 chr12 41860457 41860540 -101925915 + AluY SINE Alu 215 297 -14 394 241 276 6 chr12 41860761 41860931 -101925524 - MIR SINE MIR -19 243 28 329 154 44 0 chr12 41861864 41861955 -101924500 + CT-rich Low_complexity Low_complexity 2 96 0 508 252 73 8 chr12 41863255 41863378 -101923077 + L2 LINE L2 3178 3308 -5 329 292 87 38 chr12 41863479 41863664 -101922791 + MLT1K LTR MaLR 395 588 0 456 237 0 0 chr12 41863675 41863772 -101922683 - MIR SINE MIR -2 260 164 497 313 45 25 chr12 41863794 41863992 -101922463 + L3b LINE CR1 1281 1482 -101 1819 112 16 47 chr12 41865024 41865147 -101921308 - L1MB7 LINE L1 -20 6164 6039 2117 138 33 25 chr12 41865147 41865510 -101920945 - MER47A DNA MER2_type 0 366 1 1819 112 16 47 chr12 41865510 41865707 -101920748 - L1MB7 LINE L1 -145 6039 5854 1884 136 0 26 chr12 41865947 41866255 -101920200 + AluSx SINE Alu 1 300 -12 314 313 0 12 chr12 41867078 41867161 -101919294 - L2 LINE L2 -2 3311 3230 225 0 0 0 chr12 41867454 41867479 -101918976 + (A)n Simple_repeat Simple_repeat 1 25 0 595 320 7 19 chr12 41870049 41870268 -101916187 - MIR SINE MIR -4 258 43 278 258 155 52 chr12 41871725 41871919 -101914536 - MIR SINE MIR -13 249 36 288 213 67 0 chr12 41871920 41871995 -101914460 + MER116 DNA Mariner 1 80 0 2129 113 3 0 chr12 41872583 41872874 -101913581 - AluSp SINE Alu -19 294 3 227 246 154 46 chr12 41873133 41873263 -101913192 - MIR3 SINE MIR -64 144 1 2083 126 3 7 chr12 41873454 41873755 -101912700 - AluSx SINE Alu -12 300 1 25 23 0 23 chr12 41875742 41875759 -101910696 + AT_rich Low_complexity Low_complexity 1 17 -25 2180 71 27 3 chr12 41875759 41876056 -101910399 + AluY SINE Alu 1 304 -7 25 23 0 23 chr12 41876056 41876081 -101910374 + AT_rich Low_complexity Low_complexity 17 42 0 315 316 60 17 chr12 41877329 41877446 -101909009 + MIR3 SINE MIR 10 131 -77 226 275 83 64 chr12 41877901 41878010 -101908445 - L2 LINE L2 -4 3268 3158 25 51 0 0 chr12 41878096 41878135 -101908320 + AT_rich Low_complexity Low_complexity 1 39 0 534 276 127 37 chr12 41878665 41879384 -101907071 + L1MCa LINE L1 1016 1993 -4728 1225 158 9 35 chr12 41879414 41879642 -101906813 + AluJo SINE Alu 86 307 -5 1570 255 98 30 chr12 41880056 41881295 -101905160 + L1MCa LINE L1 2452 3770 -2770 1524 225 69 21 chr12 41882022 41882583 -101903872 - MER21B LTR ERV1 -156 707 19 417 213 0 12 chr12 41882605 41882685 -101903770 - MER21B LTR ERV1 -773 90 12 794 183 0 0 chr12 41882837 41882968 -101903487 + FLAM_C SINE Alu 2 132 -1 22 0 0 0 chr12 41882968 41882990 -101903465 + AT_rich Low_complexity Low_complexity 1 22 0 2203 99 7 0 chr12 41882990 41883274 -101903181 + AluSq SINE Alu 1 286 -27 291 28 0 0 chr12 41883274 41883310 -101903145 + (CATA)n Simple_repeat Simple_repeat 2 37 0 645 243 117 25 chr12 41883870 41884109 -101902346 - MIR SINE MIR -1 261 1 263 91 0 23 chr12 41884392 41884436 -101902019 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2020 135 3 0 chr12 41884438 41884735 -101901720 - AluSx SINE Alu -14 298 1 854 151 0 0 chr12 41884738 41884864 -101901591 - AluJo/FLAM SINE Alu -176 126 1 2220 100 7 0 chr12 41885310 41885599 -101900856 + AluSc SINE Alu 1 291 -18 338 266 163 35 chr12 41886105 41886308 -101900147 - MIR SINE MIR -32 230 2 432 167 0 78 chr12 41886377 41886467 -101899988 - AluSg/x SINE Alu -21 289 207 189 0 0 0 chr12 41886500 41886521 -101899934 + (A)n Simple_repeat Simple_repeat 1 21 0 309 362 35 0 chr12 41886600 41886741 -101899714 + HAL1 LINE L1 1113 1258 -1249 888 65 14 7 chr12 41886934 41887072 -101899383 + (GAA)n Simple_repeat Simple_repeat 3 141 0 2422 83 3 0 chr12 41887495 41887796 -101898659 + AluSp SINE Alu 1 302 -11 244 296 34 0 chr12 41888079 41888167 -101898288 + L1MB3 LINE L1 2378 2468 -3916 5001 67 23 3 chr12 41888322 41888962 -101897493 + SVA Other Other 733 1385 -1 990 209 0 0 chr12 41888991 41889154 -101897301 - FRAM SINE Alu -16 160 1 1413 232 125 30 chr12 41889356 41889851 -101896604 + MER34 LTR ERV1 1 542 0 978 276 135 61 chr12 41889892 41890765 -101895690 + L1MB3 LINE L1 2912 3849 -2533 847 218 123 82 chr12 41891562 41892084 -101894371 + MER34C LTR ERV1 40 582 -3 23 0 0 0 chr12 41892125 41892148 -101894307 + AT_rich Low_complexity Low_complexity 1 23 0 1507 177 69 47 chr12 41892420 41892838 -101893617 - MER67A LTR ERV1 0 661 84 2858 208 147 37 chr12 41893858 41894706 -101891749 + MSTB2-int LTR MaLR 695 1636 -15 1432 224 49 33 chr12 41894718 41895168 -101891287 + MSTB2 LTR MaLR 1 457 0 3380 192 31 7 chr12 41895169 41895987 -101890468 + L1MB3 LINE L1 4112 4948 -1434 2121 194 12 15 chr12 41895990 41896402 -101890053 + MSTB LTR MaLR 1 411 -15 527 150 0 20 chr12 41896408 41896508 -101889947 + MSTB1 LTR MaLR 329 426 -6 434 141 0 13 chr12 41896507 41896585 -101889870 + MSTB1 LTR MaLR 330 406 -26 * 5817 50 1 0 chr12 41896587 41897301 -101889154 - L1PA5 LINE L1 -2 6152 5438 250 98 24 0 chr12 41897303 41897344 -101889111 + MSTB1 LTR MaLR 387 428 0 1462 205 7 53 chr12 41897346 41897656 -101888799 + L1MB3 LINE L1 4949 5237 -1145 2120 154 29 75 chr12 41897656 41898135 -101888320 - MSTB2 LTR MaLR 0 457 1 1462 205 7 53 chr12 41898135 41898239 -101888216 + L1MB3 LINE L1 5237 5344 -1038 1606 169 10 35 chr12 41898282 41898603 -101887852 + AluJo SINE Alu 30 343 0 5968 126 40 5 chr12 41898661 41900221 -101886234 + L1MA4A LINE L1 4693 6297 -6 4058 166 39 39 chr12 41900207 41901242 -101885213 + L1MB3 LINE L1 5382 6419 0 * 1364 214 60 4 chr12 41901287 41901554 -101884901 - AluJo SINE Alu -30 282 1 314 323 91 0 chr12 41901747 41901846 -101884609 - L2 LINE L2 -27 3286 3179 889 242 107 0 chr12 41901856 41902071 -101884384 - MIR SINE MIR -10 252 15 359 297 61 45 chr12 41902126 41902372 -101884083 - L2 LINE L2 -167 3105 2856 325 263 111 50 chr12 41903102 41903290 -101883165 + MIR SINE MIR 4 204 -58 578 191 34 45 chr12 41903436 41903614 -101882841 + MER104 DNA MER2_type 2 177 -3 363 44 0 0 chr12 41904054 41904099 -101882356 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 0 0 0 chr12 41904477 41904502 -101881953 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 524 219 0 0 chr12 41904642 41904747 -101881708 - LTR40a LTR ERVL -3 516 412 301 211 132 0 chr12 41904744 41904820 -101881635 - LTR40b LTR ERVL -376 86 1 * 2447 73 0 22 chr12 41905484 41905798 -101880657 - AluY SINE Alu -4 307 1 2260 102 0 13 chr12 41905914 41906217 -101880238 - AluSx SINE Alu -13 299 1 2313 199 87 16 chr12 41906231 41906839 -101879616 - L1MC4a LINE L1 -129 7679 7029 1635 255 43 7 chr12 41906897 41907348 -101879107 + MLT2B1 LTR ERVL 1 471 -49 1983 160 18 3 chr12 41907348 41907691 -101878764 - MER7A DNA MER2_type 0 346 1 187 170 19 19 chr12 41907703 41907756 -101878699 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 442 196 98 0 chr12 41907808 41907920 -101878535 - L1MC4a LINE L1 -1481 6327 6205 866 199 55 71 chr12 41907922 41908251 -101878204 + L2 LINE L2 2699 3024 -289 2258 100 0 13 chr12 41908270 41908571 -101877884 - AluSg SINE Alu -13 297 1 280 272 107 68 chr12 41908597 41908700 -101877755 + L2 LINE L2 3194 3300 -13 557 195 0 0 chr12 41908726 41908844 -101877611 - L1MA9 LINE L1 -4 6308 6191 252 175 0 18 chr12 41909136 41909193 -101877262 + L1ME4a LINE L1 6065 6120 -1 268 279 0 96 chr12 41910371 41910507 -101875948 + MLT1L LTR MaLR 1 123 -492 1566 233 42 11 chr12 41910538 41910920 -101875535 + MSTD LTR MaLR 1 394 -2 958 222 36 8 chr12 41910920 41911172 -101875283 + MSTD-int LTR MaLR 2 260 -1475 285 200 69 35 chr12 41911197 41911342 -101875113 + (TAGA)n Simple_repeat Simple_repeat 1 150 0 1114 238 16 32 chr12 41911365 41911548 -101874907 + MSTD-int LTR MaLR 226 403 -1332 2168 125 20 0 chr12 41911548 41911672 -101874783 + AluSx SINE Alu 1 121 -191 186 43 0 0 chr12 41911672 41911695 -101874760 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2168 125 20 0 chr12 41911695 41911866 -101874589 + AluSx SINE Alu 121 302 -10 1114 238 16 32 chr12 41911866 41911993 -101874462 + MSTD-int LTR MaLR 403 531 -1204 10791 165 97 3 chr12 41912021 41913972 -101872483 - Tigger1 DNA MER2_type 0 2418 283 864 174 275 0 chr12 41913973 41914180 -101872275 + MER7A DNA MER2_type 54 315 -31 1955 226 49 79 chr12 41914197 41914831 -101871624 + MSTD-int LTR MaLR 531 1145 -590 * 4509 174 29 22 chr12 41914829 41915821 -101870634 - L1 LINE L1 -1314 4720 3722 2436 267 74 17 chr12 41915822 41917540 -101868915 - L1 LINE L1 -4576 1389 15 216 264 100 64 chr12 41917573 41917683 -101868772 - MIR SINE MIR -140 122 9 224 209 33 44 chr12 41918791 41918882 -101867573 + (CA)n Simple_repeat Simple_repeat 2 91 0 288 237 27 59 chr12 41918934 41919120 -101867335 + (CA)n Simple_repeat Simple_repeat 1 180 0 642 312 5 15 chr12 41919122 41919321 -101867134 + L2 LINE L2 2804 3000 -313 338 286 71 45 chr12 41919450 41919562 -101866893 - MIR3 SINE MIR -9 199 85 644 263 71 13 chr12 41919572 41919796 -101866659 - L2 LINE L2 0 3313 3077 1491 139 4 17 chr12 41920969 41921199 -101865256 - AluJb SINE Alu 0 312 86 374 248 46 28 chr12 41921747 41921856 -101864599 - MIR SINE MIR -64 144 34 467 307 118 31 chr12 41922455 41922757 -101863698 + L1MC4a LINE L1 5266 5594 -632 261 0 0 0 chr12 41923411 41923440 -101863015 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 283 240 99 68 chr12 41923479 41923833 -101862622 + L1MC4a LINE L1 5592 5956 -1852 2234 95 0 0 chr12 41923859 41924143 -101862312 - AluSc SINE Alu -25 284 1 264 149 0 0 chr12 41924360 41924407 -101862048 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 1504 183 72 26 chr12 41924630 41924979 -101861476 - MLT1A1 LTR MaLR 0 365 1 2339 96 0 0 chr12 41926979 41927281 -101859174 + AluSc SINE Alu 1 302 -7 1708 204 0 38 chr12 41928237 41928551 -101857904 - AluJo SINE Alu -10 302 1 26 30 0 0 chr12 41929326 41929359 -101857096 + AT_rich Low_complexity Low_complexity 1 33 0 1968 139 0 51 chr12 41929435 41929751 -101856704 - AluJb SINE Alu -8 304 5 305 293 31 31 chr12 41930204 41930395 -101856060 - MER117 DNA MER1_type -1 196 6 8553 240 27 29 chr12 41931010 41931282 -101855173 + L1ME1 LINE L1 2555 2826 -3340 2195 112 16 3 chr12 41931282 41931587 -101854868 + AluY SINE Alu 1 309 -2 8553 240 27 29 chr12 41931587 41934928 -101851527 + L1ME1 LINE L1 2826 6161 -5 566 239 67 21 chr12 41934934 41935173 -101851282 + L1ME4a LINE L1 5677 5926 -195 244 316 118 0 chr12 41936762 41936898 -101849557 - MIR SINE MIR 0 262 111 2175 82 31 7 chr12 41936902 41937194 -101849261 - AluSx SINE Alu -13 299 1 4433 165 18 49 chr12 41937765 41938135 -101848320 - L1MB8 LINE L1 -1 6177 5797 2158 132 0 0 chr12 41938135 41938423 -101848032 - AluSx SINE Alu -24 288 1 4433 165 18 49 chr12 41938423 41938952 -101847503 - L1MB8 LINE L1 -381 5797 5253 1837 123 56 7 chr12 41938952 41939247 -101847208 - AluSx SINE Alu 0 308 1 4433 165 18 49 chr12 41939247 41939397 -101847058 - L1MB8 LINE L1 -925 5253 5100 676 199 15 37 chr12 41939397 41939533 -101846922 - FLAM_C SINE Alu 0 133 1 4433 165 18 49 chr12 41939533 41939927 -101846528 - L1MB8 LINE L1 -1078 5100 4771 6487 50 1 3 chr12 41939964 41940826 -101845629 + L1PA5 LINE L1 4367 5226 -920 5959 36 0 0 chr12 41940926 41941628 -101844827 + L1PA5 LINE L1 5448 6149 -5 393 74 0 0 chr12 41941629 41941683 -101844772 + L1MB7 LINE L1 5820 5873 -311 473 214 0 0 chr12 41941683 41941772 -101844683 + AluJ/FLAM SINE Alu 1 89 -223 418 240 0 0 chr12 41941770 41941845 -101844610 - AluSc SINE Alu -106 203 129 * 713 182 7 7 chr12 41941851 41941994 -101844461 + L1MB8 LINE L1 6030 6172 -6 516 164 26 0 chr12 41941998 41942114 -101844341 - MER45B DNA AcHobo -85 955 837 295 268 0 14 chr12 41943243 41943314 -101843141 + GA-rich Low_complexity Low_complexity 2 71 0 1552 75 84 0 chr12 41944563 41944776 -101841679 + AluY SINE Alu 12 242 -69 1323 161 125 4 chr12 41944787 41945084 -101841371 + AluJb SINE Alu 5 331 0 333 241 18 36 chr12 41945125 41945237 -101841218 + MER34 LTR ERV1 433 542 0 538 188 0 0 chr12 41945699 41945784 -101840671 + AluJ/FLAM SINE Alu 1 85 -227 692 281 44 76 chr12 41946341 41946840 -101839615 + MER34 LTR ERV1 25 507 -35 765 276 84 4 chr12 41946882 41947121 -101839334 + MIR SINE MIR 5 262 0 379 154 90 0 chr12 41947126 41947204 -101839251 + Tigger4(Zombi) DNA MER2_type 2 86 -2645 * 2134 100 18 131 chr12 41947202 41947247 -101839208 + Tigger4(Zombi) DNA MER2_type 2295 2343 -388 2134 108 7 0 chr12 41947247 41947542 -101838913 + AluSx SINE Alu 1 297 -15 2134 100 18 131 chr12 41947542 41947605 -101838850 + Tigger4(Zombi) DNA MER2_type 2343 2411 -320 2233 99 3 0 chr12 41947605 41947908 -101838547 + AluY SINE Alu 1 304 -7 2361 72 3 16 chr12 41947917 41948221 -101838234 + AluY SINE Alu 2 301 -10 2134 100 18 131 chr12 41948221 41948544 -101837911 + Tigger4(Zombi) DNA MER2_type 2419 2679 -52 2214 121 3 3 chr12 41948544 41948857 -101837598 - AluSq SINE Alu 0 313 1 2134 100 18 131 chr12 41948857 41948903 -101837552 + Tigger4(Zombi) DNA MER2_type 2679 2729 -2 232 269 214 41 chr12 41949036 41949104 -101837351 - MIR SINE MIR -6 256 201 2385 81 0 10 chr12 41949104 41949401 -101837054 - AluSq SINE Alu -19 294 1 232 269 214 41 chr12 41949401 41949477 -101836978 - MIR SINE MIR -61 201 87 1933 144 26 7 chr12 41949661 41949967 -101836488 + AluSx SINE Alu 1 312 0 2099 126 3 0 chr12 41950123 41950417 -101836038 - AluSx SINE Alu -17 295 1 1831 130 13 32 chr12 41950516 41950831 -101835624 + AluSx SINE Alu 1 309 -3 23 33 0 0 chr12 41951099 41951129 -101835326 + AT_rich Low_complexity Low_complexity 1 30 0 2128 96 0 17 chr12 41951311 41951603 -101834852 + AluSx SINE Alu 1 287 -25 2220 132 0 0 chr12 41952754 41953064 -101833391 + AluSx SINE Alu 1 310 -2 407 295 40 23 chr12 41953995 41954168 -101832287 + MIR SINE MIR 63 238 -24 250 335 126 50 chr12 41954333 41954895 -101831560 + L2 LINE L2 1576 2180 -1134 350 235 78 0 chr12 41954993 41955095 -101831360 - MER94 DNA DNA -3 131 22 267 192 64 77 chr12 41955124 41955155 -101831300 + L2 LINE L2 2213 2243 -1071 423 284 68 28 chr12 41955155 41955405 -101831050 + MIR SINE MIR 2 261 -1 267 192 64 77 chr12 41955405 41955451 -101831004 + L2 LINE L2 2243 2289 -1025 2577 56 0 7 chr12 41955541 41955846 -101830609 - AluSp SINE Alu -8 305 3 1873 164 3 19 chr12 41955849 41956166 -101830289 - AluJb SINE Alu 0 312 1 814 158 8 8 chr12 41956507 41956640 -101829815 + FLAM_C SINE Alu 1 133 0 313 314 54 94 chr12 41957057 41957388 -101829067 + L2 LINE L2 2930 3247 -25 * 614 178 178 72 chr12 41957370 41957514 -101828941 - MIR SINE MIR 0 262 94 2329 113 0 6 chr12 41957514 41957825 -101828630 + AluSx SINE Alu 1 309 -3 614 178 178 72 chr12 41957825 41957860 -101828595 - MIR SINE MIR -168 94 64 924 186 24 0 chr12 41957889 41958056 -101828399 - AluJb SINE Alu -2 310 140 2012 141 0 0 chr12 41958826 41959117 -101827338 - AluSx SINE Alu -11 301 11 1430 171 0 72 chr12 41959180 41959484 -101826971 + AluJo SINE Alu 1 282 -30 298 329 14 77 chr12 41960100 41960113 -101826342 - MIR SINE MIR -23 185 173 2209 114 0 0 chr12 41960113 41960410 -101826045 + AluSx SINE Alu 5 301 -11 298 329 14 77 chr12 41960410 41960426 -101826029 - MIR SINE MIR -35 173 158 900 83 41 12 chr12 41960426 41960595 -101825860 + CT-rich Low_complexity Low_complexity 3 176 0 1659 160 22 8 chr12 41960595 41960863 -101825592 - AluJb SINE Alu -38 274 3 298 329 14 77 chr12 41960863 41960974 -101825481 - MIR SINE MIR -48 160 51 2200 107 7 0 chr12 41961905 41962213 -101824242 - AluSq SINE Alu -3 310 1 2326 86 0 0 chr12 41962437 41962729 -101823726 + AluSq SINE Alu 6 297 -16 941 110 15 0 chr12 41962955 41963091 -101823364 + AluSg/x SINE Alu 155 292 -18 702 166 159 0 chr12 41963091 41963248 -101823207 + MER34C LTR ERV1 52 233 -352 867 126 0 22 chr12 41963325 41963460 -101822995 - FLAM_C SINE Alu -1 132 1 371 174 43 33 chr12 41963470 41963562 -101822893 + MER34 LTR ERV1 450 542 0 423 263 61 14 chr12 41965042 41965229 -101821226 + MIR SINE MIR 2 243 -19 265 333 56 0 chr12 41965431 41965521 -101820934 - MIR SINE MIR -81 127 33 1759 127 3 75 chr12 41965686 41965891 -101820564 - AluJb SINE Alu -11 301 126 2718 20 0 0 chr12 41965891 41966192 -101820263 - AluYa5 SINE Alu -10 301 1 1759 127 3 75 chr12 41966192 41966308 -101820147 - AluJb SINE Alu -186 126 3 2168 127 0 7 chr12 41966308 41966616 -101819839 - AluSx SINE Alu -6 306 1 307 390 45 7 chr12 41966688 41966842 -101819613 - L2 LINE L2 -5 3267 3108 24 0 0 0 chr12 41967190 41967214 -101819241 + AT_rich Low_complexity Low_complexity 1 24 0 2050 139 3 0 chr12 41967215 41967502 -101818953 - AluSx SINE Alu -24 288 1 242 391 167 3 chr12 41967878 41968177 -101818278 + L2 LINE L2 2384 2731 -583 1281 109 258 0 chr12 41968491 41968712 -101817743 - AluSx SINE Alu -21 291 14 814 181 0 0 chr12 41969028 41969155 -101817300 - FLAM_C SINE Alu -16 127 1 1637 148 39 18 chr12 41969195 41969314 -101817141 + AluJo SINE Alu 16 131 -181 1787 118 110 7 chr12 41969314 41969586 -101816869 + AluSx SINE Alu 3 302 -10 1637 148 39 18 chr12 41969586 41969749 -101816706 + AluJo SINE Alu 131 304 -8 569 157 0 0 chr12 41971242 41971325 -101815130 - FLAM_C SINE Alu -24 119 37 5457 93 10 6 chr12 41971504 41972192 -101814263 + LTR8 LTR ERV1 1 691 0 267 239 0 0 chr12 41972213 41972280 -101814175 + CT-rich Low_complexity Low_complexity 4 70 0 4136 140 14 65 chr12 41972308 41973036 -101813419 + LTR8 LTR ERV1 1 691 0 233 283 2 0 chr12 41973395 41973462 -101812993 - Charlie8 DNA MER1_type 0 2417 1350 1528 117 0 0 chr12 41973513 41973736 -101812719 + L1PA11 LINE L1 4434 4656 -1490 1554 137 4 18 chr12 41973737 41973963 -101812492 + AluSx SINE Alu 1 223 -89 5023 93 10 40 chr12 41973965 41974687 -101811768 + L1PA11 LINE L1 5474 6173 -1 2287 114 7 0 chr12 41974716 41975022 -101811433 + AluSx SINE Alu 1 308 -4 507 282 84 40 chr12 41975116 41975343 -101811112 - Charlie8 DNA MER1_type -2153 264 28 327 49 0 0 chr12 41975350 41975391 -101811064 + (T)n Simple_repeat Simple_repeat 1 41 0 1939 158 3 7 chr12 41976086 41976390 -101810065 + AluJb SINE Alu 1 303 -9 4809 41 2 7 chr12 41976437 41976998 -101809457 + LTR6B LTR ERV1 1 558 0 204 290 29 0 chr12 41977203 41977272 -101809183 + L3 LINE CR1 383 453 -1124 2708 144 16 39 chr12 41977282 41977775 -101808680 - L1MC/D LINE L1 -605 5739 5258 1184 161 24 28 chr12 41977778 41977989 -101808466 - AluJb SINE Alu -17 295 86 6869 231 34 41 chr12 41977989 41978990 -101807465 - L1MC/D LINE L1 -877 5269 4262 2317 113 0 3 chr12 41978990 41979300 -101807155 - AluSq SINE Alu -1 312 4 6869 231 34 41 chr12 41979300 41980335 -101806120 - L1MC/D LINE L1 -1884 4262 3248 2279 84 0 3 chr12 41980346 41980661 -101805794 - AluSq SINE Alu 0 314 1 1822 89 0 0 chr12 41980724 41980948 -101805507 - AluSg/x SINE Alu -7 305 82 2256 94 13 7 chr12 41981133 41981440 -101805015 - AluSq SINE Alu -4 309 1 931 251 61 4 chr12 41981506 41981753 -101804702 - MIR SINE MIR 0 262 2 250 293 108 40 chr12 41981997 41982219 -101804236 + HAL1 LINE L1 1978 2214 -293 2278 109 3 0 chr12 41982632 41982936 -101803519 - AluSg SINE Alu -5 305 1 2369 80 0 0 chr12 41983518 41983805 -101802650 + AluSg SINE Alu 6 292 -18 266 208 52 39 chr12 41984689 41984766 -101801689 + MIR SINE MIR 38 115 -147 668 261 115 14 chr12 41985045 41985263 -101801192 + MIR SINE MIR 23 262 0 202 222 44 0 chr12 41985326 41985371 -101801084 - MIR SINE MIR -114 94 48 192 40 0 0 chr12 41985799 41985824 -101800631 + (A)n Simple_repeat Simple_repeat 1 25 0 333 313 23 16 chr12 41986212 41986340 -101800115 - MER5B DNA MER1_type -49 129 1 619 286 8 0 chr12 41988616 41988749 -101797706 + MER91A DNA MER1_type 63 196 0 181 291 222 26 chr12 41989733 41989850 -101796605 - L2 LINE L2 0 3272 3133 22 0 0 0 chr12 41990384 41990406 -101796049 + AT_rich Low_complexity Low_complexity 1 22 0 499 288 160 14 chr12 41990906 41991125 -101795330 + MLT1L LTR MaLR 1 251 -364 801 220 28 16 chr12 41991156 41991338 -101795117 - MLT1C LTR MaLR 0 467 284 1661 196 52 70 chr12 41991367 41991745 -101794710 + MER34B LTR ERV1 10 378 -187 2289 104 0 0 chr12 41991745 41992043 -101794412 - AluSg SINE Alu -7 303 6 1661 196 52 70 chr12 41992043 41992165 -101794290 + MER34B LTR ERV1 378 501 -64 2027 130 0 10 chr12 41992180 41992479 -101793976 - AluSq SINE Alu -17 296 1 1074 148 59 110 chr12 41992562 41992852 -101793603 - MLT1C LTR MaLR -189 278 4 442 308 83 29 chr12 41992880 41993120 -101793335 + MLT1L LTR MaLR 355 607 -8 264 200 0 0 chr12 41993333 41993388 -101793067 + GA-rich Low_complexity Low_complexity 3 57 0 507 241 141 42 chr12 41993498 41993689 -101792766 - MER63A DNA MER1_type 0 210 1 788 116 91 8 chr12 41993819 41993940 -101792515 + FLAM_C SINE Alu 1 131 -2 343 319 11 0 chr12 41993993 41994084 -101792371 + L2 LINE L2 3136 3227 -45 389 216 23 0 chr12 41994402 41994490 -101791965 + MER103 DNA DNA 2 91 -75 624 267 76 33 chr12 41995157 41995367 -101791088 + MIR SINE MIR 2 220 -42 2192 110 7 0 chr12 41995371 41995671 -101790784 - AluSg SINE Alu -6 304 3 2046 116 24 10 chr12 41996525 41996817 -101789638 + AluSq SINE Alu 1 296 -17 1825 161 40 3 chr12 41996906 41997205 -101789250 + AluJb SINE Alu 1 310 -2 3185 128 66 8 chr12 41997350 41997880 -101788575 - L1P LINE L1 -755 5391 4831 3050 84 18 0 chr12 41997880 41998259 -101788196 + L1PA11 LINE L1 5784 6172 -2 429 294 8 8 chr12 41998354 41998473 -101787982 + L2 LINE L2 3191 3309 -4 2496 88 0 0 chr12 41999297 41999604 -101786851 - AluSg SINE Alu -3 307 1 2104 120 25 0 chr12 42000234 42000518 -101785937 - AluSx SINE Alu -21 291 1 1551 173 70 16 chr12 42002355 42002742 -101783713 + L1M4 LINE L1 1180 1587 -4955 2087 132 3 13 chr12 42002745 42003055 -101783400 + AluSg SINE Alu 1 307 -3 231 171 0 0 chr12 42003055 42003090 -101783365 - MIR SINE MIR -164 98 64 210 143 0 0 chr12 42003110 42003145 -101783310 + (T)n Simple_repeat Simple_repeat 1 35 0 45 0 0 0 chr12 42003401 42003446 -101783009 + AT_rich Low_complexity Low_complexity 1 45 0 270 259 54 102 chr12 42004184 42004331 -101782124 - L2 LINE L2 -1098 2216 2077 616 180 49 0 chr12 42004337 42004459 -101781996 + L1ME2 LINE L1 6036 6163 -1 189 0 0 0 chr12 42004477 42004498 -101781957 + (GA)n Simple_repeat Simple_repeat 2 22 0 505 198 75 9 chr12 42005882 42005988 -101780467 + FLAM_C SINE Alu 3 115 -28 207 0 0 0 chr12 42005988 42006011 -101780444 + (GA)n Simple_repeat Simple_repeat 2 24 0 755 230 17 6 chr12 42006013 42006187 -101780268 + L1MDa LINE L1 316 491 -6049 320 274 0 0 chr12 42007016 42007089 -101779366 - L1PA15-16 LINE L1 -5688 1161 1089 664 209 29 15 chr12 42007122 42007289 -101779166 + MSTB2 LTR MaLR 1 158 -268 752 95 0 0 chr12 42007502 42007597 -101778858 - AluS SINE Alu -217 96 2 35 0 0 0 chr12 42008115 42008150 -101778305 + AT_rich Low_complexity Low_complexity 1 35 0 550 173 0 0 chr12 42008150 42008231 -101778224 - FRAM SINE Alu -27 149 69 901 122 17 22 chr12 42008382 42008563 -101777892 + GA-rich Low_complexity Low_complexity 1 180 0 305 21 0 64 chr12 42008722 42008769 -101777686 + (TA)n Simple_repeat Simple_repeat 2 45 0 917 113 0 0 chr12 42008795 42008919 -101777536 - AluY SINE Alu -187 124 1 226 213 43 64 chr12 42008933 42009027 -101777428 - L1MB7 LINE L1 -54 6130 6039 320 131 0 33 chr12 42009032 42009093 -101777362 - Alu SINE Alu 0 301 243 4464 173 11 6 chr12 42009197 42009982 -101776473 + L1MA4A LINE L1 5291 6079 -224 1136 131 6 11 chr12 42010256 42010431 -101776024 + HERVK9 LTR ERVK 5461 5634 -282 670 251 9 23 chr12 42010574 42010793 -101775662 + L1M4 LINE L1 4170 4385 -1761 1909 158 3 0 chr12 42010793 42011078 -101775377 + AluSg SINE Alu 1 286 -24 2527 109 5 55 chr12 42011259 42011661 -101774794 + MLT2A1 LTR ERVL 28 409 -35 792 78 0 0 chr12 42011694 42011797 -101774658 - MLT2A2 LTR ERVL -346 107 5 1010 214 6 3 chr12 42012206 42012450 -101774005 + L1M4 LINE L1 2443 2685 -3461 600 188 0 0 chr12 42012451 42012552 -101773903 + AluS SINE Alu 2 102 -210 2134 117 3 0 chr12 42013877 42014167 -101772288 - AluSx SINE Alu -21 291 1 250 287 112 58 chr12 42014196 42014384 -101772071 - MIR SINE MIR -32 230 33 371 104 0 30 chr12 42015180 42015247 -101771208 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 881 197 13 13 chr12 42015264 42015567 -101770888 + MER93b LTR ERV1 1 402 0 1736 144 22 4 chr12 42015602 42015873 -101770582 + AluJo SINE Alu 7 282 -30 287 206 56 24 chr12 42016401 42016527 -101769928 + (TA)n Simple_repeat Simple_repeat 2 131 0 1543 190 21 14 chr12 42016697 42016986 -101769469 + AluJo SINE Alu 3 293 -19 2005 146 0 0 chr12 42016988 42017298 -101769157 + AluSx SINE Alu 1 310 0 25 0 0 0 chr12 42017302 42017327 -101769128 + AT_rich Low_complexity Low_complexity 1 25 0 2685 113 35 0 chr12 42018056 42018429 -101768026 - L1PA11 LINE L1 -1 6173 5788 927 172 0 0 chr12 42018499 42018644 -101767811 - AluJb SINE Alu -23 289 145 4552 174 16 6 chr12 42018655 42019539 -101766916 - L1MD1 LINE L1 -187 6055 5161 785 96 0 17 chr12 42019528 42019540 -101766915 - L1PB1 LINE L1 -238 5913 5902 * 2162 111 3 0 chr12 42019540 42019828 -101766627 - AluSg SINE Alu -21 289 1 785 96 0 17 chr12 42019828 42019930 -101766525 - L1PB1 LINE L1 -249 5902 5801 331 230 48 63 chr12 42019913 42020039 -101766416 + L1M4 LINE L1 3804 3927 -2219 * 566 320 7 19 chr12 42071545 42071764 -101714691 - MIR SINE MIR -4 258 43 261 271 186 8 chr12 42073297 42073415 -101713040 - MIR SINE MIR -88 174 36 330 213 67 0 chr12 42073416 42073491 -101712964 + MER116 DNA Mariner 1 80 0 2129 113 3 0 chr12 42074079 42074370 -101712085 - AluSp SINE Alu -19 294 3 227 246 154 46 chr12 42074629 42074759 -101711696 - MIR3 SINE MIR -64 144 1 2083 126 3 7 chr12 42074950 42075251 -101711204 - AluSx SINE Alu -12 300 1 25 23 0 23 chr12 42077238 42077255 -101709200 + AT_rich Low_complexity Low_complexity 1 17 -25 2330 67 20 0 chr12 42077255 42077553 -101708902 + AluY SINE Alu 1 304 -7 25 23 0 23 chr12 42077553 42077578 -101708877 + AT_rich Low_complexity Low_complexity 17 42 0 315 316 60 17 chr12 42078826 42078943 -101707512 + MIR3 SINE MIR 10 131 -77 226 275 83 64 chr12 42079398 42079507 -101706948 - L2 LINE L2 -4 3268 3158 25 51 0 0 chr12 42079593 42079632 -101706823 + AT_rich Low_complexity Low_complexity 1 39 0 534 276 127 37 chr12 42080162 42080881 -101705574 + L1ME3 LINE L1 1016 1993 -4728 1219 157 9 39 chr12 42080911 42081140 -101705315 + AluJo SINE Alu 86 307 -5 5585 251 71 55 chr12 42081541 42085503 -101700952 + L1ME3 LINE L1 2452 6475 -81 2206 96 4 0 chr12 42085972 42086252 -101700203 + AluSx SINE Alu 9 289 -23 345 47 0 0 chr12 42086536 42086579 -101699876 + (TA)n Simple_repeat Simple_repeat 1 43 0 2284 75 3 29 chr12 42086579 42086876 -101699579 - AluY SINE Alu -20 291 1 25 0 0 0 chr12 42087432 42087457 -101698998 + AT_rich Low_complexity Low_complexity 1 25 0 341 377 26 21 chr12 42087897 42088088 -101698367 - MIR SINE MIR -50 212 21 245 350 117 6 chr12 42088607 42088770 -101697685 + MIR SINE MIR 12 192 -70 207 0 0 0 chr12 42089653 42089676 -101696779 + (T)n Simple_repeat Simple_repeat 1 23 0 308 300 0 12 chr12 42089969 42090049 -101696406 + L2 LINE L2 3230 3308 -5 185 307 69 30 chr12 42090772 42090873 -101695582 - MIR3 SINE MIR -2 206 102 1998 136 0 26 chr12 42090875 42091183 -101695272 - AluSx SINE Alu -12 300 1 1698 115 16 47 chr12 42091423 42091620 -101694835 + L1MB7 LINE L1 5854 6039 -145 2078 138 33 25 chr12 42091620 42091983 -101694472 + MER47A DNA MER2_type 1 366 0 1698 115 16 47 chr12 42091983 42092106 -101694349 + L1MB7 LINE L1 6039 6164 -20 474 313 45 25 chr12 42093138 42093336 -101693119 - L3b LINE CR1 -101 1482 1281 453 237 0 0 chr12 42093358 42093455 -101693000 + MIR SINE MIR 164 260 -2 268 300 47 41 chr12 42093469 42093639 -101692816 - MLT1K LTR MaLR -7 581 411 504 252 73 8 chr12 42093752 42093875 -101692580 - L2 LINE L2 -5 3308 3178 329 154 44 0 chr12 42095175 42095266 -101691189 + GA-rich Low_complexity Low_complexity 2 96 0 34 84 0 0 chr12 42096199 42096282 -101690173 + GC_rich Low_complexity Low_complexity 1 83 0 216 0 0 0 chr12 42096671 42096695 -101689760 + (CAA)n Simple_repeat Simple_repeat 2 25 0 357 267 11 11 chr12 42099772 42099862 -101686593 + MIR3 SINE MIR 90 179 -29 281 243 59 59 chr12 42099975 42100111 -101686344 - MIR3 SINE MIR -12 196 61 265 252 92 17 chr12 42100201 42100320 -101686135 - L2 LINE L2 -1265 2049 1922 274 247 165 24 chr12 42100675 42100760 -101685695 - MIR3 SINE MIR -35 173 77 264 339 57 0 chr12 42100814 42100938 -101685517 + L3 LINE CR1 1446 1576 -1 21 0 0 0 chr12 42101671 42101692 -101684763 + AT_rich Low_complexity Low_complexity 1 21 0 184 237 0 0 chr12 42102026 42102064 -101684391 - MER5B DNA MER1_type -76 102 65 21 0 0 0 chr12 42102070 42102091 -101684364 + AT_rich Low_complexity Low_complexity 1 21 0 304 333 58 23 chr12 42102923 42103094 -101683361 - MIR SINE MIR -13 249 73 21 0 0 0 chr12 42103515 42103536 -101682919 + AT_rich Low_complexity Low_complexity 1 21 0 493 274 183 5 chr12 42104318 42104526 -101681929 - MIR SINE MIR 0 262 18 198 71 0 0 chr12 42104875 42104903 -101681552 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 248 327 262 10 chr12 42104912 42105114 -101681341 - L2 LINE L2 -22 3250 2998 1143 234 63 9 chr12 42106866 42107199 -101679256 + L2 LINE L2 2382 2732 -582 385 237 214 15 chr12 42107194 42107325 -101679130 - MER5B DNA MER1_type -13 165 9 * 498 285 298 5 chr12 42107352 42107575 -101678880 + L2 LINE L2 2818 2975 -338 354 45 0 0 chr12 42107575 42107619 -101678836 + (CACCC)n Simple_repeat Simple_repeat 4 47 0 498 285 298 5 chr12 42107619 42107778 -101678677 + L2 LINE L2 2975 3312 -1 812 256 10 0 chr12 42108972 42109171 -101677284 - MIR SINE MIR -10 252 52 477 306 88 0 chr12 42109179 42109326 -101677129 - MIR SINE MIR -71 191 32 271 291 206 14 chr12 42109619 42109758 -101676697 - MIR SINE MIR -63 145 9 341 219 8 31 chr12 42110458 42110586 -101675869 + CT-rich Low_complexity Low_complexity 2 126 0 2111 137 0 0 chr12 42111200 42111493 -101674962 + AluSq SINE Alu 1 293 -20 1119 238 46 32 chr12 42111957 42112035 -101674420 + MER39 LTR ERV1 179 254 -453 2103 53 0 26 chr12 42112035 42112300 -101674155 - AluY SINE Alu -5 306 49 1119 238 46 32 chr12 42112300 42112610 -101673845 + MER39 LTR ERV1 254 707 0 1333 181 90 12 chr12 42112613 42113029 -101673426 + LTR54 LTR ERV1 1 395 -8 42176 39 3 1 chr12 42113176 42119318 -101667137 - L1PA4 LINE L1 -3 6152 1 3109 98 8 38 chr12 42119711 42120212 -101666243 - LTR15 LTR ERV1 -7 486 1 279 273 82 27 chr12 42120392 42120502 -101665953 - L2 LINE L2 -574 2740 2625 793 355 116 24 chr12 42120649 42120975 -101665480 - L2 LINE L2 -214 3058 2763 2020 184 41 0 chr12 42120975 42121362 -101665093 + MER57A LTR ERV1 1 403 0 793 355 116 24 chr12 42121362 42122589 -101663866 - L2 LINE L2 -509 2763 1352 267 284 128 14 chr12 42122729 42122870 -101663585 - L2 LINE L2 -2493 821 665 455 254 54 54 chr12 42122888 42123073 -101663382 - MLT1J2 LTR MaLR -2 448 264 2038 124 97 58 chr12 42123627 42124039 -101662416 + MSTA LTR MaLR 1 428 0 7625 138 35 81 chr12 42124039 42124401 -101662054 + MSTA-int LTR MaLR 1 378 -1273 637 74 0 0 chr12 42124401 42124482 -101661973 - AluSp/q SINE Alu -16 297 217 7625 138 35 81 chr12 42124482 42125727 -101660728 + MSTA-int LTR MaLR 378 1651 0 1991 152 101 24 chr12 42125727 42126102 -101660353 + MSTA LTR MaLR 1 404 -24 350 115 49 0 chr12 42126092 42126153 -101660302 + THE1B LTR MaLR 301 364 0 * 321 306 56 0 chr12 42126232 42126340 -101660115 + MLT1J2 LTR MaLR 101 214 -236 220 231 58 0 chr12 42126353 42126405 -101660050 - L2 LINE L2 0 3313 3259 2258 130 25 3 chr12 42127374 42127729 -101658726 + THE1B LTR MaLR 1 363 -1 1917 204 83 34 chr12 42127756 42128251 -101658204 - LTR40a LTR ERVL 0 519 1 1767 180 17 0 chr12 42128521 42128832 -101657623 + AluJb SINE Alu 1 312 0 28 29 0 0 chr12 42129741 42129776 -101656679 + AT_rich Low_complexity Low_complexity 1 35 0 1048 211 84 92 chr12 42129954 42130347 -101656108 + MSTD LTR MaLR 6 395 -1 1434 229 32 42 chr12 42130731 42131137 -101655318 + MLT1C LTR MaLR 53 454 -13 27 81 0 0 chr12 42131179 42131241 -101655214 + AT_rich Low_complexity Low_complexity 1 62 0 22 56 0 0 chr12 42131269 42131305 -101655150 + AT_rich Low_complexity Low_complexity 1 36 0 231 268 62 0 chr12 42131347 42131459 -101654996 + L1M4 LINE L1 3826 3944 -2202 981 276 6 3 chr12 42131529 42131840 -101654615 + L1M4 LINE L1 3551 3862 -2284 1505 254 45 71 chr12 42131867 42132429 -101654026 + MER77 LTR ERV1 53 599 -6 238 206 14 82 chr12 42132420 42132493 -101653962 + MER21A LTR ERV1 677 744 -187 * 2202 122 0 0 chr12 42132527 42132830 -101653625 - AluSg SINE Alu -7 303 1 774 263 80 98 chr12 42132831 42133836 -101652619 + L1M4 LINE L1 3859 4845 -1301 997 57 14 7 chr12 42134038 42134179 -101652276 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 2034 143 0 0 chr12 42134179 42134459 -101651996 - AluSx SINE Alu -32 280 1 23 92 0 0 chr12 42134962 42135027 -101651428 + AT_rich Low_complexity Low_complexity 1 65 0 1412 281 90 32 chr12 42136163 42137236 -101649219 - L1M4 LINE L1 -768 5378 4243 1340 213 61 78 chr12 42137239 42137833 -101648622 - LTR24B LTR ERV1 0 635 1 902 262 61 71 chr12 42137836 42138329 -101648126 - L1M4 LINE L1 -1908 4238 3751 261 167 0 21 chr12 42138331 42138379 -101648076 + L2 LINE L2 3189 3235 -78 425 310 67 32 chr12 42139437 42139473 -101646982 + L2 LINE L2 3020 3053 -260 2312 117 0 0 chr12 42139473 42139780 -101646675 + AluSx SINE Alu 1 307 -5 425 310 67 32 chr12 42139780 42140027 -101646428 + L2 LINE L2 3053 3313 0 687 264 112 15 chr12 42140211 42140408 -101646047 + MIR SINE MIR 35 250 -12 650 258 57 90 chr12 42140967 42141355 -101645100 + MLT1L LTR MaLR 207 581 -34 2252 118 28 12 chr12 42143699 42144224 -101642231 + MER4A LTR ERV1 1 664 0 1151 246 164 0 chr12 42144332 42144734 -101641721 - MER110A LTR ERV1 0 468 1 2575 103 76 8 chr12 42145177 42145574 -101640881 - MSTA LTR MaLR 0 428 5 1919 163 6 10 chr12 42145716 42146029 -101640426 - AluJb SINE Alu 0 312 1 539 279 51 6 chr12 42146143 42146301 -101640154 - L2 LINE L2 -1082 2232 2068 1050 208 78 42 chr12 42146960 42147292 -101639163 + MER2 DNA MER2_type 1 344 0 945 113 0 0 chr12 42147544 42147677 -101638778 - AluSg/x SINE Alu -4 308 176 926 180 11 14 chr12 42148482 42148746 -101637709 - MER41B-int LTR ERV1 -5588 358 1 1039 110 7 0 chr12 42148746 42148900 -101637555 - MER41B LTR ERV1 0 635 481 1952 129 0 21 chr12 42148934 42149220 -101637235 - AluSx SINE Alu -32 280 1 180 300 100 0 chr12 42149371 42149421 -101637034 + L2 LINE L2 3121 3175 -97 369 385 16 11 chr12 42149745 42149932 -101636523 - L2 LINE L2 -584 2730 2543 706 317 53 12 chr12 42149975 42150221 -101636234 + MIR SINE MIR 7 262 0 25 31 0 0 chr12 42150916 42150948 -101635507 + AT_rich Low_complexity Low_complexity 1 32 0 27 49 0 0 chr12 42151125 42151166 -101635289 + AT_rich Low_complexity Low_complexity 1 41 0 702 228 122 11 chr12 42151338 42151527 -101634928 - MER63A DNA MER1_type 0 210 1 284 116 130 14 chr12 42151659 42151728 -101634727 + MER116 DNA Mariner 4 80 0 604 266 75 117 chr12 42151735 42151908 -101634547 - MLT1L LTR MaLR -21 594 415 1949 142 10 0 chr12 42151908 42152196 -101634259 + AluSx SINE Alu 3 293 -19 604 266 75 117 chr12 42152196 42152518 -101633937 - MLT1L LTR MaLR -200 415 120 333 0 0 0 chr12 42152746 42152783 -101633672 + (TG)n Simple_repeat Simple_repeat 2 38 0 473 308 116 22 chr12 42153408 42153632 -101632823 + MIR SINE MIR 18 262 0 26 50 0 0 chr12 42153698 42153738 -101632717 + AT_rich Low_complexity Low_complexity 1 40 0 677 254 54 111 chr12 42155736 42156075 -101630380 + MLT1J1 LTR MaLR 69 389 -57 270 0 0 0 chr12 42156075 42156105 -101630350 + (TTA)n Simple_repeat Simple_repeat 2 31 0 677 254 54 111 chr12 42156105 42156116 -101630339 + MLT1J1 LTR MaLR 389 399 -47 205 273 0 0 chr12 42156634 42156678 -101629777 + (TG)n Simple_repeat Simple_repeat 1 44 0 320 106 0 0 chr12 42156796 42156843 -101629612 - MADE1 DNA Mariner 0 80 34 793 230 6 29 chr12 42156864 42157038 -101629417 - MER20 DNA MER1_type -49 170 1 366 368 26 0 chr12 42157225 42157342 -101629113 + MER115 DNA AcHobo 93 212 -481 315 196 18 0 chr12 42157494 42157550 -101628905 + MER115 DNA AcHobo 478 534 -159 4756 117 14 24 chr12 42158897 42159678 -101626777 - L1MA2 LINE L1 0 6304 5532 25 75 0 0 chr12 42160593 42160646 -101625809 + AT_rich Low_complexity Low_complexity 1 53 0 289 258 72 10 chr12 42160688 42160785 -101625670 - MIR SINE MIR -8 254 152 671 184 24 8 chr12 42160787 42160912 -101625543 - FLAM_C SINE Alu -2 131 5 735 193 146 42 chr12 42161974 42162255 -101624200 - MLT1B LTR MaLR 0 390 4 449 257 158 7 chr12 42162552 42162704 -101623751 - MIR SINE MIR 0 262 88 288 375 0 0 chr12 42162949 42163045 -101623410 + MER5A DNA MER1_type 87 182 -7 733 233 149 43 chr12 42163046 42163330 -101623125 + MLT1D LTR MaLR 1 314 -153 1214 276 104 43 chr12 42164021 42164550 -101621905 + L2 LINE L2 2211 2771 -543 210 174 0 0 chr12 42164647 42164693 -101621762 + T-rich Low_complexity Low_complexity 1 46 0 7020 66 0 2 chr12 42164704 42165875 -101620580 - L1PA5 LINE L1 -8 6146 4977 895 295 93 12 chr12 42165920 42166252 -101620203 - MLT1J LTR MaLR -131 380 22 * 936 272 53 36 chr12 42166251 42166667 -101619788 - MLT1J1 LTR MaLR -6 440 18 791 292 142 46 chr12 42166719 42167198 -101619257 + L2 LINE L2 2773 3305 -8 26 64 0 0 chr12 42167543 42167590 -101618865 + AT_rich Low_complexity Low_complexity 1 47 0 400 246 68 0 chr12 42169165 42169283 -101617172 - MIR3 SINE MIR -17 191 66 215 350 33 17 chr12 42169377 42169497 -101616958 - MIR SINE MIR -15 247 126 225 0 0 0 chr12 42169519 42169544 -101616911 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1254 244 0 11 chr12 42169554 42169816 -101616639 - AluJo SINE Alu -38 274 16 29 0 0 0 chr12 42171519 42171548 -101614907 + AT_rich Low_complexity Low_complexity 1 29 0 343 285 36 0 chr12 42171746 42171883 -101614572 - L1ME4a LINE L1 -19 6102 5961 2420 65 0 7 chr12 42172070 42172378 -101614077 + AluY SINE Alu 1 306 -5 944 269 36 17 chr12 42172382 42172683 -101613772 + L2 LINE L2 2395 2701 -613 2849 7 0 0 chr12 42172690 42173000 -101613455 - AluYa5 SINE Alu -1 310 1 808 162 9 52 chr12 42173101 42173311 -101613144 - Charlie1 DNA MER1_type -4 2757 2557 229 103 0 0 chr12 42173318 42173347 -101613108 + Alu SINE Alu 257 285 -17 1555 165 19 23 chr12 42173383 42173649 -101612806 - AluJb SINE Alu -46 266 2 1196 148 9 5 chr12 42173653 42173863 -101612592 - Charlie1 DNA MER1_type -208 2553 2343 251 254 45 0 chr12 42173861 42173928 -101612527 - Charlie1 DNA MER1_type -2690 71 2 * 787 309 127 30 chr12 42173943 42174406 -101612049 + L2 LINE L2 2806 3313 0 3015 225 35 19 chr12 42175825 42176690 -101609765 - L1M4 LINE L1 -1003 5537 4659 1328 209 77 14 chr12 42176692 42176989 -101609466 + Tigger7 DNA MER2_type 3 318 -2169 832 121 29 58 chr12 42176985 42177159 -101609296 + Tigger7 DNA MER2_type 2302 2470 -21 * 201 74 0 0 chr12 42177168 42177195 -101609260 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr12 42177254 42177275 -101609180 + AT_rich Low_complexity Low_complexity 1 21 0 1684 184 47 25 chr12 42177315 42178048 -101608407 - L1MEc LINE L1 -3150 3390 2566 41959 42 3 3 chr12 42178055 42184203 -101602252 - L1PA4 LINE L1 -8 6147 2 7324 194 23 26 chr12 42184220 42186992 -101599463 - L1PA16 LINE L1 -2 6867 4099 395 81 0 0 chr12 42187215 42187277 -101599178 - L1MA4A LINE L1 -2 6301 6240 6950 68 10 0 chr12 42187335 42188705 -101597750 - L1PA8 LINE L1 0 6172 4799 1947 86 14 0 chr12 42188705 42188996 -101597459 - L1PA8 LINE L1 -1735 4411 4117 15838 184 28 38 chr12 42189026 42190508 -101595947 - L1PA16 LINE L1 -2777 4072 2576 2390 34 54 3 chr12 42190508 42190804 -101595651 - AluY SINE Alu 0 311 1 15838 184 28 38 chr12 42190804 42193427 -101593028 - L1PA16 LINE L1 -4273 2576 5 2372 255 55 35 chr12 42193429 42194507 -101591948 - L1MEc LINE L1 -4099 2622 1524 22 0 10 0 chr12 42195185 42195249 -101591206 + AT_rich Low_complexity Low_complexity 1 22 0 1871 164 13 19 chr12 42195358 42195668 -101590787 + AluJo SINE Alu 1 308 -4 887 128 17 17 chr12 42196163 42196342 -101590113 + CT-rich Low_complexity Low_complexity 1 179 0 692 99 12 56 chr12 42196308 42196469 -101589986 + (TTCCC)n Simple_repeat Simple_repeat 4 157 0 * 1375 206 89 0 chr12 42196473 42196721 -101589734 - AluJb SINE Alu -33 279 10 2599 32 0 19 chr12 42197022 42197333 -101589122 - AluY SINE Alu -5 306 2 368 284 169 14 chr12 42197852 42198000 -101588455 - MER91A DNA MER1_type -25 171 1 267 54 0 0 chr12 42198503 42198540 -101587915 + (T)n Simple_repeat Simple_repeat 1 37 0 19645 104 2 13 chr12 42198553 42202374 -101584081 + L1PA8 LINE L1 2391 6166 -6 270 0 0 0 chr12 42203099 42203129 -101583326 + (TG)n Simple_repeat Simple_repeat 1 30 0 2349 223 91 12 chr12 42203862 42204079 -101582376 - MLT1E1 LTR MaLR 0 654 456 3656 114 99 5 chr12 42204079 42204676 -101581779 - MER39B LTR ERV1 0 653 1 2349 223 91 12 chr12 42204676 42205064 -101581391 - MLT1E1 LTR MaLR -198 456 1 41 58 0 0 chr12 42206043 42206112 -101580343 + AT_rich Low_complexity Low_complexity 1 69 0 844 278 77 46 chr12 42206117 42206272 -101580183 - L1ME4a LINE L1 -202 5919 5770 1777 166 10 24 chr12 42206272 42206567 -101579888 + AluJo SINE Alu 1 291 -21 844 278 77 46 chr12 42206567 42206770 -101579685 - L1ME4a LINE L1 -351 5770 5575 2107 152 157 16 chr12 42206770 42207211 -101579244 + MLT1D LTR MaLR 3 505 0 844 278 77 46 chr12 42207211 42207483 -101578972 - L1ME4a LINE L1 -546 5575 5269 3335 161 54 2 chr12 42207681 42208297 -101578158 + L1PB4 LINE L1 5502 6149 -7 633 192 104 6 chr12 42208332 42208514 -101577941 + Charlie1 DNA MER1_type 2174 2373 -388 244 196 0 0 chr12 42208596 42208647 -101577808 - Alu SINE Alu -5 297 247 685 200 0 0 chr12 42208694 42208809 -101577646 - FLAM_A SINE Alu -18 115 1 25 0 0 0 chr12 42209286 42209311 -101577144 + AT_rich Low_complexity Low_complexity 1 25 0 1147 80 0 0 chr12 42209313 42209463 -101576992 - L1PA5 LINE L1 -8 6146 5997 402 278 15 30 chr12 42209526 42209659 -101576796 - MIR3 SINE MIR -65 143 13 779 264 107 84 chr12 42310758 42311684 -101474771 + HAL1 LINE L1 818 1764 -743 304 236 39 39 chr12 42311917 42312044 -101474411 + HAL1b LINE L1 754 880 -468 429 262 79 118 chr12 42312356 42313105 -101473350 - L1MEd LINE L1 -4866 1253 534 395 302 26 17 chr12 42313271 42313387 -101473068 - MIR3 SINE MIR -50 158 42 508 310 94 79 chr12 42314540 42315325 -101471130 + L2 LINE L2 2091 2887 -427 250 319 0 0 chr12 42315514 42315583 -101470872 + L2 LINE L2 3241 3309 -4 2240 92 0 3 chr12 42317148 42317431 -101469024 - AluSq SINE Alu -31 282 1 200 143 238 0 chr12 42318177 42318219 -101468236 + L2 LINE L2 3261 3312 -1 519 319 126 63 chr12 42319645 42320059 -101466396 + L2 LINE L2 2827 3266 -6 216 0 0 0 chr12 42321463 42321487 -101464968 + (A)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr12 42323266 42323288 -101463167 + AT_rich Low_complexity Low_complexity 1 22 0 468 345 81 53 chr12 42323462 42323929 -101462526 + L2 LINE L2 2372 2851 -463 555 35 23 23 chr12 42323936 42324023 -101462432 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 21 0 0 0 chr12 42324079 42324100 -101462355 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr12 42324166 42324205 -101462250 + (CA)n Simple_repeat Simple_repeat 2 40 0 286 291 177 25 chr12 42324338 42324496 -101461959 + MIR SINE MIR 21 202 -60 431 272 63 7 chr12 42324782 42324975 -101461480 - L1MC4a LINE L1 -322 5799 5678 391 297 0 43 chr12 42325993 42326131 -101460324 + MIR SINE MIR 66 197 -65 193 307 93 0 chr12 42329398 42329473 -101456982 + MIR3 SINE MIR 119 200 -8 204 261 0 72 chr12 42336725 42336794 -101449661 - L2 LINE L2 -4 3268 3205 26 64 0 0 chr12 42336900 42336947 -101449508 + AT_rich Low_complexity Low_complexity 1 47 0 1718 167 42 0 chr12 42337261 42337573 -101448882 - MER7A DNA MER2_type 0 346 24 528 125 0 0 chr12 42337573 42337661 -101448794 + L1MB4 LINE L1 6093 6180 0 311 298 159 0 chr12 42338120 42338246 -101448209 - MIR3 SINE MIR -28 180 34 266 197 40 72 chr12 42339711 42339813 -101446642 + MIR SINE MIR 74 181 -27 228 236 0 18 chr12 42339914 42339969 -101446486 + (TATG)n Simple_repeat Simple_repeat 1 54 0 180 111 0 0 chr12 42339969 42339996 -101446459 + (CA)n Simple_repeat Simple_repeat 1 27 0 1463 211 41 6 chr12 42342877 42343311 -101443144 - L1MC4a LINE L1 -528 5636 5177 2741 113 39 7 chr12 42343630 42344045 -101442410 + MSTA LTR MaLR 1 428 0 618 222 28 6 chr12 42344079 42344259 -101442196 + L1MDa LINE L1 1960 2143 -4397 2429 222 47 29 chr12 42344301 42345477 -101440978 + L1MDa LINE L1 2234 3428 -3112 2333 96 0 0 chr12 42345477 42345778 -101440677 + AluY SINE Alu 5 305 -6 2429 222 47 29 chr12 42345778 42345827 -101440628 + L1MDa LINE L1 3428 3475 -3065 2129 111 44 0 chr12 42346121 42346419 -101440036 + AluY SINE Alu 1 311 0 236 319 118 21 chr12 42346434 42346578 -101439877 + MIR3 SINE MIR 19 176 -32 1972 133 11 0 chr12 42346687 42346972 -101439483 + AluSx SINE Alu 14 301 -11 1483 220 24 34 chr12 42347105 42347171 -101439284 + MLT1A2 LTR MaLR 1 66 -308 2036 144 39 30 chr12 42347171 42347532 -101438923 - THE1B LTR MaLR 0 364 1 11570 93 15 0 chr12 42347532 42349087 -101437368 - THE1B-int LTR MaLR 0 1580 2 1998 162 30 30 chr12 42349088 42349452 -101437003 - THE1B LTR MaLR 0 364 1 1483 220 24 34 chr12 42349452 42349760 -101436695 + MLT1A2 LTR MaLR 64 374 0 371 258 20 33 chr12 42349764 42349915 -101436540 + (CA)n Simple_repeat Simple_repeat 1 149 0 459 311 26 44 chr12 42349919 42350147 -101436308 + L2 LINE L2 2836 3059 -213 1642 173 52 6 chr12 42350201 42350525 -101435930 + MER44D DNA MER2_type 1 609 0 515 157 83 9 chr12 42350527 42350635 -101435820 - MER63 DNA MER1_type -277 785 44 372 313 55 16 chr12 42350778 42350906 -101435549 + L2 LINE L2 3136 3268 -4 5376 21 0 0 chr12 42351464 42352082 -101434373 - L1PA3 LINE L1 0 6155 5538 402 205 161 0 chr12 42352142 42352254 -101434201 + MLT1H LTR MaLR 79 208 -341 1816 158 45 0 chr12 42352382 42352712 -101433743 - L1PB4 LINE L1 -1 6155 5811 339 297 117 28 chr12 42352827 42353298 -101433157 - L1ME LINE L1 -304 5817 5296 22 0 0 0 chr12 42353848 42353870 -101432585 + AT_rich Low_complexity Low_complexity 1 22 0 1854 147 3 23 chr12 42353879 42354179 -101432276 + AluJo SINE Alu 1 294 -18 3322 127 16 87 chr12 42354535 42355213 -101431242 - L1MB2 LINE L1 -5 6166 5537 382 255 54 27 chr12 42355239 42355388 -101431067 - L1ME LINE L1 -872 5274 5122 839 82 0 8 chr12 42355925 42356047 -101430408 + (TTCC)n Simple_repeat Simple_repeat 1 121 0 282 56 0 0 chr12 42356065 42356101 -101430354 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 519 182 28 6 chr12 42356190 42356366 -101430089 + (TA)n Simple_repeat Simple_repeat 1 180 0 25 31 0 0 chr12 42356370 42356402 -101430053 + AT_rich Low_complexity Low_complexity 1 32 0 2235 158 13 3 chr12 42356787 42357172 -101429283 - L1PA16 LINE L1 -5 6864 6476 8193 174 42 2 chr12 42357375 42359792 -101426663 - L1PA14 LINE L1 -1 6160 3663 1237 13 0 0 chr12 42359792 42359941 -101426514 - L1PA4 LINE L1 -5 6150 6002 1550 170 0 10 chr12 42359943 42360249 -101426206 - L1PA14 LINE L1 -2481 3665 3363 11200 206 21 20 chr12 42360250 42360635 -101425820 - L1PA16 LINE L1 -386 6483 6100 2001 119 7 3 chr12 42360635 42360928 -101425527 - AluSq SINE Alu -19 294 1 11200 206 21 20 chr12 42360928 42364081 -101422374 - L1PA16 LINE L1 -769 6100 2938 36391 83 6 7 chr12 42364082 42370231 -101416224 - L1PA6 LINE L1 -1 6153 11 1278 133 27 0 chr12 42370240 42370465 -101415990 - L1PA16 LINE L1 -3898 2951 2721 1446 108 5 0 chr12 42370477 42370671 -101415784 + AluSg/x SINE Alu 107 301 -11 9489 159 29 8 chr12 42370671 42372357 -101414098 - L1PA16 LINE L1 -4171 2678 958 1172 183 5 10 chr12 42372349 42372557 -101413898 - L1PA16 LINE L1 -6640 209 3 * 592 295 84 35 chr12 42372731 42372958 -101413497 + MIR SINE MIR 1 238 -24 3203 95 20 18 chr12 42372978 42373430 -101413025 + MLT2A2 LTR ERVL 1 453 0 12066 78 2 10 chr12 42373430 42375093 -101411362 + HERVL-A2 LTR ERVL 1 1649 -4005 1700 154 3 64 chr12 42375093 42375269 -101411186 - AluSx SINE Alu -20 292 142 1780 54 0 0 chr12 42375269 42375492 -101410963 - L1PA4 LINE L1 0 6155 5933 1700 154 3 64 chr12 42375492 42375626 -101410829 - AluSx SINE Alu -170 142 1 28539 81 16 6 chr12 42375626 42379595 -101406860 + HERVL-A2 LTR ERVL 1645 5654 0 3055 127 11 4 chr12 42379595 42380045 -101406410 + MLT2A2 LTR ERVL 1 453 0 1763 171 9 40 chr12 42380096 42380594 -101405861 - L1MA7 LINE L1 -743 5403 4953 4340 170 31 4 chr12 42380594 42381424 -101405031 + L1MA7 LINE L1 5430 6291 0 233 143 0 0 chr12 42381449 42381498 -101404957 + L1MA7 LINE L1 6243 6291 0 22 70 0 0 chr12 42381498 42381541 -101404914 + AT_rich Low_complexity Low_complexity 1 43 0 241 267 17 0 chr12 42381583 42381643 -101404812 - L2 LINE L2 -48 3224 3164 226 328 218 11 chr12 42381656 42381830 -101404625 - MIR SINE MIR -6 256 47 1284 135 0 0 chr12 42382276 42382461 -101403994 - AluSc SINE Alu -1 308 124 414 278 141 49 chr12 42383059 42383627 -101402828 + HAL1 LINE L1 1151 1770 -737 24 32 0 0 chr12 42383714 42383745 -101402710 + AT_rich Low_complexity Low_complexity 1 31 0 364 227 38 30 chr12 42384100 42384232 -101402223 + MER94 DNA DNA 1 133 -1 280 211 40 40 chr12 42385484 42385560 -101400895 - MIR SINE MIR 0 262 187 2048 119 7 0 chr12 42385612 42385922 -101400533 - AluSx SINE Alu 0 314 3 208 307 67 60 chr12 42386310 42386460 -101399995 - MIR SINE MIR 0 262 112 229 268 71 24 chr12 42386838 42386965 -101399490 + LTR67 LTR ERVL 374 506 -51 2423 133 35 18 chr12 42387395 42387830 -101398625 + L1PA16 LINE L1 5724 6165 -1 23 0 0 0 chr12 42388217 42388240 -101398215 + AT_rich Low_complexity Low_complexity 1 23 0 444 221 21 43 chr12 42388246 42388386 -101398069 - MLT1H LTR MaLR -8 541 405 591 295 48 2 chr12 42388460 42388698 -101397757 - MLT1H LTR MaLR -260 289 1 282 277 50 0 chr12 42388779 42388880 -101397575 + ERVL LTR ERVL 1066 1171 -4593 584 248 0 0 chr12 42389465 42389582 -101396873 - FLAM_A SINE Alu -19 123 7 26 74 0 0 chr12 42389662 42389716 -101396739 + AT_rich Low_complexity Low_complexity 1 54 0 3199 131 25 8 chr12 42390006 42390561 -101395894 - L1P4 LINE L1 -491 5675 5099 2218 113 72 20 chr12 42390561 42390907 -101395548 + THE1B LTR MaLR 1 364 0 3199 131 25 8 chr12 42390907 42391316 -101395139 - L1P4 LINE L1 -1067 5099 4698 361 296 100 15 chr12 42391364 42391624 -101394831 - L1MEc LINE L1 -4821 1575 1294 2490 145 39 7 chr12 42391626 42392039 -101394416 + MSTB LTR MaLR 1 426 0 4239 194 38 1 chr12 42392039 42392873 -101393582 + MSTB-int LTR MaLR 1 865 -786 2783 121 7 2 chr12 42392870 42393309 -101393146 + L1PA15 LINE L1 5672 6112 -53 * 296 64 21 0 chr12 42393320 42393367 -101393088 + (GA)n Simple_repeat Simple_repeat 2 49 0 315 83 0 0 chr12 42393401 42393449 -101393006 + L1PA15 LINE L1 6112 6159 -6 302 239 33 0 chr12 42393456 42393548 -101392907 + L1MC4a LINE L1 6520 6614 -1194 3872 159 12 1 chr12 42393559 42394226 -101392229 + L1PA16 LINE L1 5477 6150 -16 2427 83 0 10 chr12 42394238 42394520 -101391935 + AluY SINE Alu 1 281 -30 219 36 0 0 chr12 42394520 42394548 -101391907 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2427 83 0 10 chr12 42394548 42394579 -101391876 + AluY SINE Alu 281 311 0 645 177 9 0 chr12 42394617 42394730 -101391725 - AluJb SINE Alu -196 116 3 431 249 43 109 chr12 42394732 42394945 -101391510 + L1MEc LINE L1 1729 1923 -4503 3351 166 21 13 chr12 42395039 42396130 -101390325 - L1PB4 LINE L1 -447 5709 4614 1114 144 12 37 chr12 42396127 42396372 -101390083 + L1PB4 LINE L1 5718 5928 -228 * 2088 118 0 3 chr12 42396663 42396987 -101389468 - AluSx SINE Alu 0 323 1 300 154 0 0 chr12 42398776 42398828 -101387627 + (CA)n Simple_repeat Simple_repeat 2 53 0 672 217 72 14 chr12 42398828 42399049 -101387406 + L1M4 LINE L1 3516 3749 -2397 446 254 87 89 chr12 42399876 42400139 -101386316 - MIR SINE MIR 0 262 3 5795 25 0 0 chr12 42400157 42400868 -101385587 - L1PA2 LINE L1 -1560 4586 3876 7760 18 0 0 chr12 42400870 42402429 -101384026 + L1PA2 LINE L1 4592 6150 -5 207 0 0 0 chr12 42402480 42402503 -101383952 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 225 331 77 24 chr12 42402941 42403110 -101383345 + L2 LINE L2 1274 1451 -1863 303 316 160 5 chr12 42404428 42404640 -101381815 + MIR SINE MIR 12 256 -6 851 270 18 9 chr12 42404884 42405106 -101381349 + MIR SINE MIR 23 246 -16 637 286 193 22 chr12 42406735 42407057 -101379398 + L3 LINE CR1 1138 1514 -63 222 333 65 24 chr12 42407214 42407337 -101379118 - MIR3 SINE MIR -31 177 50 298 346 47 0 chr12 42407340 42407467 -101378988 + L2 LINE L2 2606 2738 -576 201 39 0 0 chr12 42407732 42407758 -101378697 + (T)n Simple_repeat Simple_repeat 1 26 0 310 191 0 15 chr12 42408326 42408394 -101378061 - MLT1H LTR MaLR 0 549 483 1518 185 41 134 chr12 42408876 42409488 -101376967 + MLT1F1 LTR MaLR 10 567 0 460 298 90 50 chr12 42409520 42409977 -101376478 - MLT1H LTR MaLR -74 475 1 2190 101 0 3 chr12 42411147 42411434 -101375021 - AluSc SINE Alu -23 286 1 43 20 0 0 chr12 42411608 42411658 -101374797 + AT_rich Low_complexity Low_complexity 1 50 0 391 295 33 8 chr12 42412151 42412273 -101374182 - MIR SINE MIR -62 146 22 390 311 20 27 chr12 42412744 42412892 -101373563 - MIR SINE MIR -50 212 66 472 246 109 44 chr12 42413360 42413543 -101372912 - L3 LINE CR1 -10 1567 1373 210 327 159 9 chr12 42413538 42413651 -101372804 + L2 LINE L2 3143 3272 0 * 8185 200 49 15 chr12 42413802 42416910 -101369545 - L1MB7 LINE L1 -29 6653 3443 360 195 25 42 chr12 42416922 42417040 -101369415 + L1M4c LINE L1 2013 2128 -4256 5956 212 53 35 chr12 42417096 42417568 -101368887 - L1MB7 LINE L1 -4543 2103 1641 2295 106 0 3 chr12 42417568 42417871 -101368584 - AluY SINE Alu -9 302 1 5956 212 53 35 chr12 42417871 42419439 -101367016 - L1MB7 LINE L1 -5005 1641 5 449 328 40 17 chr12 42419932 42420109 -101366346 - MER5A DNA MER1_type -1 188 8 180 105 105 53 chr12 42420304 42420342 -101366113 - MER5B DNA MER1_type -26 152 113 349 287 67 27 chr12 42420555 42420778 -101365677 + L1ME3A LINE L1 5699 5930 -240 206 289 19 0 chr12 42421179 42421231 -101365224 + MIR SINE MIR 98 150 -58 328 323 21 10 chr12 42421240 42421432 -101365023 - MER117 DNA MER1_type 0 197 4 184 231 135 0 chr12 42422130 42422182 -101364273 - L2 LINE L2 -372 2942 2884 232 333 51 0 chr12 42422472 42422550 -101363905 + L2 LINE L2 3201 3282 -31 2416 99 48 20 chr12 42422599 42422953 -101363502 + THE1B LTR MaLR 1 364 0 397 259 124 26 chr12 42423269 42423462 -101362993 - MLT1I LTR MaLR -3 406 195 235 299 30 81 chr12 42423720 42423917 -101362538 - L2 LINE L2 -639 2675 2489 219 295 39 13 chr12 42424113 42424191 -101362264 + L2 LINE L2 3180 3259 -54 269 247 32 21 chr12 42424196 42424289 -101362166 + MLT1K LTR MaLR 374 467 -121 2748 16 0 16 chr12 42425326 42425642 -101360813 - AluY SINE Alu 0 311 1 216 309 93 31 chr12 42426105 42426202 -101360253 - L2 LINE L2 -8 3305 3203 1224 242 91 52 chr12 42427510 42428092 -101358363 + L1ME3A LINE L1 5561 6165 -5 1437 163 89 3 chr12 42428099 42428436 -101358019 + HsTC2 DNA Tc2 1527 1892 -6 25 51 0 0 chr12 42428437 42428476 -101357979 + AT_rich Low_complexity Low_complexity 1 39 0 294 345 73 36 chr12 42428805 42428970 -101357485 + L2 LINE L2 3081 3251 -21 1814 161 6 3 chr12 42430989 42431300 -101355155 - AluJb SINE Alu 0 312 1 21 0 0 0 chr12 42432381 42432402 -101354053 + AT_rich Low_complexity Low_complexity 1 21 0 216 344 31 10 chr12 42432956 42433052 -101353403 + L2 LINE L2 2640 2737 -577 231 152 0 0 chr12 42433143 42433189 -101353266 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 242 214 71 0 chr12 42433540 42433638 -101352817 + L1ME3A LINE L1 3120 3224 -2922 909 219 59 95 chr12 42433666 42433770 -101352685 + L1ME3A LINE L1 5727 5833 -337 1709 136 46 85 chr12 42433770 42434160 -101352295 - THE1C LTR MaLR 0 375 1 909 219 59 95 chr12 42434160 42434516 -101351939 + L1ME3A LINE L1 5833 6170 0 410 305 75 35 chr12 42434588 42434611 -101351844 - MIR SINE MIR -3 259 238 2778 71 6 0 chr12 42434611 42434964 -101351491 - THE1A LTR MaLR 0 355 1 410 305 75 35 chr12 42434964 42435114 -101351341 - MIR SINE MIR -24 238 79 21 0 0 0 chr12 42435177 42435198 -101351257 + AT_rich Low_complexity Low_complexity 1 21 0 312 345 150 9 chr12 42435548 42435768 -101350687 + L1M4 LINE L1 3607 3857 -2289 837 215 32 117 chr12 42435877 42436193 -101350262 - MLT1H LTR MaLR -195 354 66 2302 173 19 12 chr12 42436216 42436639 -101349816 + MSTB LTR MaLR 1 426 0 9290 159 27 11 chr12 42436640 42438263 -101348192 + MSTB-int LTR MaLR 2 1651 0 2326 191 19 2 chr12 42438263 42438682 -101347773 + MSTB LTR MaLR 1 426 0 247 137 0 39 chr12 42438786 42438837 -101347618 + Alu SINE Alu 253 301 -1 482 296 120 69 chr12 42439110 42439305 -101347150 + L1M4 LINE L1 3974 4158 -1988 782 226 208 0 chr12 42439305 42439579 -101346876 - MER46C DNA MER2_type -3 335 5 482 296 120 69 chr12 42439579 42440169 -101346286 + L1M4 LINE L1 4158 4799 -1347 26 50 0 0 chr12 42440258 42440298 -101346157 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr12 42440626 42440664 -101345791 + AT_rich Low_complexity Low_complexity 1 38 0 1761 164 27 17 chr12 42440849 42441148 -101345307 + AluJo SINE Alu 1 302 -10 793 137 0 0 chr12 42441622 42441746 -101344709 - L1PA14 LINE L1 -2 6159 6036 190 358 77 24 chr12 42441890 42442097 -101344358 + L3 LINE CR1 744 961 -616 717 333 184 7 chr12 42442151 42442569 -101343886 + L3 LINE CR1 1082 1573 -4 485 298 88 11 chr12 42442693 42442874 -101343581 + MIR SINE MIR 20 214 -48 1343 258 130 27 chr12 42443657 42444230 -101342225 + L2 LINE L2 2691 3312 -1 336 289 77 10 chr12 42444236 42444340 -101342115 + MIR3 SINE MIR 89 199 -9 215 256 179 0 chr12 42444995 42445073 -101341382 + L2 LINE L2 3219 3310 -3 264 321 19 9 chr12 42445337 42445443 -101341012 + MIR SINE MIR 28 134 -128 294 232 49 0 chr12 42446457 42446539 -101339916 + MER94 DNA DNA 8 93 -41 29 0 0 0 chr12 42448839 42448868 -101337587 + AT_rich Low_complexity Low_complexity 1 29 0 374 198 246 8 chr12 42449953 42450079 -101336376 - MIR3 SINE MIR -23 185 30 1898 152 3 10 chr12 42450817 42451106 -101335349 + AluJb SINE Alu 1 287 -25 201 39 0 0 chr12 42451192 42451218 -101335237 + (CA)n Simple_repeat Simple_repeat 1 26 0 418 273 34 113 chr12 42451897 42452135 -101334320 + L2 LINE L2 3045 3263 -9 * 498 284 16 0 chr12 42452106 42452233 -101334222 - L2 LINE L2 0 3313 3185 769 247 156 40 chr12 42452236 42452641 -101333814 + LTR16A1 LTR ERVL 6 457 0 506 319 73 13 chr12 42452645 42452958 -101333497 - L2 LINE L2 -124 3189 2858 2234 102 0 55 chr12 42453007 42453332 -101333123 + AluSg SINE Alu 1 307 -3 201 147 0 0 chr12 42453767 42453801 -101332654 + (TCCCC)n Simple_repeat Simple_repeat 3 36 0 203 167 0 21 chr12 42453818 42453866 -101332589 + T-rich Low_complexity Low_complexity 2 48 0 761 264 42 14 chr12 42454217 42454433 -101332022 - MIR SINE MIR -34 228 7 208 304 72 14 chr12 42454490 42454559 -101331896 + L2 LINE L2 3142 3214 -58 21 0 0 0 chr12 42457185 42457206 -101329249 + AT_rich Low_complexity Low_complexity 1 21 0 425 191 34 0 chr12 42457219 42457308 -101329147 + L1MC1 LINE L1 36 127 -6299 1365 156 35 57 chr12 42457308 42457331 -101329124 - MSTB1 LTR MaLR -2 430 408 367 60 0 0 chr12 42457331 42457381 -101329074 + L1PA3 LINE L1 6103 6152 -3 1365 156 35 57 chr12 42457381 42457672 -101328783 - MSTB1 LTR MaLR -24 408 123 2379 87 0 0 chr12 42457697 42457996 -101328459 - AluY SINE Alu -12 299 1 877 114 101 6 chr12 42458011 42458169 -101328286 + THE1C LTR MaLR 203 375 0 10163 118 26 40 chr12 42458169 42459773 -101326682 + THE1C-int LTR MaLR 1 1580 0 1951 137 55 27 chr12 42459773 42460138 -101326317 + THE1C LTR MaLR 1 375 0 3912 214 81 66 chr12 42460141 42461800 -101324655 + L1MC1 LINE L1 622 2256 -4170 2116 110 41 0 chr12 42461800 42462092 -101324363 + AluSx SINE Alu 1 304 -8 3912 214 81 66 chr12 42462092 42462279 -101324176 + L1MC1 LINE L1 2256 2439 -3987 2004 143 3 10 chr12 42462279 42462564 -101323891 + AluSx SINE Alu 1 285 -27 216 0 0 0 chr12 42462564 42462588 -101323867 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2004 143 3 10 chr12 42462588 42462602 -101323853 + AluSx SINE Alu 285 298 -14 1951 119 3 61 chr12 42462609 42462936 -101323519 + AluSx SINE Alu 5 312 0 3912 214 81 66 chr12 42462936 42463174 -101323281 + L1MC1 LINE L1 2444 2724 -3702 14302 170 13 2 chr12 42463175 42470318 -101316137 - L1PA14 LINE L1 -1 7598 1 5878 222 25 58 chr12 42470320 42473938 -101312517 + L1MC1 LINE L1 2714 6089 -524 597 203 20 0 chr12 42473952 42474100 -101312355 + L1M4 LINE L1 4404 4554 -1592 2201 144 71 22 chr12 42474154 42474565 -101311890 + L1MC1 LINE L1 6164 6594 -19 261 0 0 0 chr12 42474764 42474793 -101311662 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2516 83 3 3 chr12 42475862 42476174 -101310281 - AluSp SINE Alu -1 312 1 21 0 0 0 chr12 42476644 42476665 -101309790 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr12 42476751 42476776 -101309679 + AT_rich Low_complexity Low_complexity 1 25 0 201 39 0 0 chr12 42477188 42477214 -101309241 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 258 105 0 0 chr12 42477213 42477251 -101309204 + (CA)n Simple_repeat Simple_repeat 1 38 0 423 186 29 69 chr12 42477817 42477919 -101308536 + MER5A DNA MER1_type 1 98 -91 193 307 93 0 chr12 42480157 42480232 -101306223 + MIR3 SINE MIR 119 200 -8 204 261 0 72 chr12 42487484 42487553 -101298902 - L2 LINE L2 -4 3268 3205 26 64 0 0 chr12 42487659 42487706 -101298749 + AT_rich Low_complexity Low_complexity 1 47 0 1822 164 42 0 chr12 42488020 42488332 -101298123 - MER7A DNA MER2_type 0 346 24 541 125 0 0 chr12 42488332 42488420 -101298035 + L1MB4 LINE L1 6093 6180 0 15883 85 3 15 chr12 42488647 42490967 -101295488 + L1PA6 LINE L1 1379 3669 -2477 6751 77 3 1 chr12 42490965 42491883 -101294572 + L1PA6 LINE L1 5235 6154 0 * 6055 83 0 2 chr12 42491885 42492703 -101293752 + L1PA8 LINE L1 5347 6162 -10 2323 200 27 0 chr12 42492712 42493193 -101293262 + L1MB5 LINE L1 5666 6159 -15 23 0 0 0 chr12 42495648 42495671 -101290784 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 42496682 42496703 -101289752 + AT_rich Low_complexity Low_complexity 1 21 0 249 341 29 58 chr12 42496945 42497083 -101289372 - L2 LINE L2 -22 3250 3117 602 259 54 46 chr12 42497098 42497357 -101289098 + MIR SINE MIR 2 262 0 264 30 0 0 chr12 42497465 42497498 -101288957 + (GA)n Simple_repeat Simple_repeat 2 34 0 228 371 35 9 chr12 42497968 42498084 -101288371 - L2 LINE L2 0 3313 3195 1205 182 19 9 chr12 42500832 42501046 -101285409 + MER20 DNA MER1_type 4 219 0 896 198 44 26 chr12 42501055 42501328 -101285127 - MER33 DNA MER1_type 0 324 47 248 0 0 0 chr12 42501598 42501634 -101284821 + L1PA4 LINE L1 6119 6154 -1 640 149 34 20 chr12 42502852 42502879 -101283576 + L1ME LINE L1 5281 5306 -860 2139 93 0 3 chr12 42502879 42503179 -101283276 + L1PA10 LINE L1 5866 6164 -4 640 149 34 20 chr12 42503179 42503316 -101283139 + L1ME LINE L1 5306 5441 -725 * 12137 205 37 34 chr12 42503305 42505036 -101281419 + L1MA5A LINE L1 3 1727 -5212 2225 97 3 3 chr12 42505036 42505325 -101281130 + AluSp SINE Alu 8 296 -17 12137 205 37 34 chr12 42505325 42506940 -101279515 + L1MA5A LINE L1 1727 3336 -3603 1282 124 0 0 chr12 42506940 42507117 -101279338 - AluY SINE Alu -13 298 122 12137 205 37 34 chr12 42507117 42509990 -101276465 + L1MA5A LINE L1 3336 6414 -525 31 20 0 20 chr12 42510011 42510035 -101276420 + AT_rich Low_complexity Low_complexity 1 24 -24 2012 119 50 6 chr12 42510035 42510378 -101276077 + L1MA5A LINE L1 6577 6934 -5 31 20 0 20 chr12 42510378 42510402 -101276053 + AT_rich Low_complexity Low_complexity 24 48 0 834 106 0 0 chr12 42510402 42510525 -101275930 + L1MB3 LINE L1 6061 6183 0 277 322 83 8 chr12 42510677 42510798 -101275657 + L2 LINE L2 2260 2389 -925 231 326 220 9 chr12 42510958 42511185 -101275270 + L2 LINE L2 2438 2712 -602 2768 110 55 2 chr12 42511388 42511806 -101274649 - MER4A LTR ERV1 -26 638 199 1576 100 0 0 chr12 42511808 42512008 -101274447 - AluSq SINE Alu -113 200 1 773 112 0 0 chr12 42512008 42512124 -101274331 - MER4A LTR ERV1 -548 116 1 671 157 16 8 chr12 42512153 42512274 -101274181 - FLAM_A SINE Alu -6 136 15 22 56 0 0 chr12 42512612 42512648 -101273807 + AT_rich Low_complexity Low_complexity 1 36 0 363 311 62 43 chr12 42512909 42513166 -101273289 + L1 LINE L1 4159 4420 -1726 237 316 163 32 chr12 42513389 42513579 -101272876 + L2 LINE L2 3056 3270 -2 * 541 378 40 3 chr12 42513572 42513874 -101272581 + L3 LINE CR1 518 830 -747 21 0 0 0 chr12 42515109 42515130 -101271325 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr12 42517198 42517235 -101269220 + AT_rich Low_complexity Low_complexity 1 37 0 254 203 40 40 chr12 42518365 42518439 -101268016 + MIR SINE MIR 88 161 -101 181 189 0 27 chr12 42519032 42519069 -101267386 + L2 LINE L2 3226 3261 -11 442 18 0 0 chr12 42519594 42519649 -101266806 + L1PA6 LINE L1 6095 6149 -5 288 0 0 0 chr12 42519960 42519992 -101266463 + (TAA)n Simple_repeat Simple_repeat 2 33 0 397 298 89 0 chr12 42520755 42520879 -101265576 - L2 LINE L2 0 3313 3179 2186 134 39 35 chr12 42521278 42521711 -101264744 + L1MA8 LINE L1 5854 6288 -3 660 193 165 71 chr12 42521748 42521960 -101264495 - MIR SINE MIR -26 236 5 337 70 0 0 chr12 42522628 42522671 -101263784 - Alu SINE Alu -259 43 1 210 180 0 20 chr12 42522700 42522750 -101263705 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 297 232 0 14 chr12 42523220 42523289 -101263166 - MIR SINE MIR -113 149 82 1035 167 59 21 chr12 42523764 42523950 -101262505 + Tigger7 DNA MER2_type 32 224 -2263 651 130 0 0 chr12 42523945 42524037 -101262418 + Tigger7 DNA MER2_type 2374 2465 -22 * 187 330 43 0 chr12 42524137 42524231 -101262224 - L2 LINE L2 -584 2730 2633 2274 113 0 3 chr12 42524370 42524681 -101261774 - AluSg SINE Alu 0 310 1 21 0 0 0 chr12 42526581 42526602 -101259853 + AT_rich Low_complexity Low_complexity 1 21 0 859 290 52 8 chr12 42527261 42527509 -101258946 + MIR SINE MIR 4 262 0 201 330 97 37 chr12 42527507 42527807 -101258648 + L2 LINE L2 2410 2727 -587 * 39845 62 4 2 chr12 42527830 42533955 -101252500 + L1PA5 LINE L1 11 6153 -1 297 283 40 20 chr12 42534327 42534426 -101252029 - L2 LINE L2 0 3272 3172 349 288 53 45 chr12 42534493 42534625 -101251830 - MIR SINE MIR -62 200 68 520 298 40 31 chr12 42534635 42534860 -101251595 + MIR SINE MIR 2 228 -34 216 293 49 12 chr12 42535534 42535616 -101250839 - MIR SINE MIR -127 135 51 2614 119 41 7 chr12 42537174 42537587 -101248868 + MSTA LTR MaLR 2 428 0 325 265 0 0 chr12 42537870 42537938 -101248517 + L2 LINE L2 3246 3313 0 300 276 11 0 chr12 42539323 42539410 -101247045 + MIR SINE MIR 173 260 -2 201 74 0 0 chr12 42540198 42540225 -101246230 + (TAA)n Simple_repeat Simple_repeat 2 28 0 253 237 119 42 chr12 42540860 42540978 -101245477 - L1ME4a LINE L1 -31 6090 5964 350 308 133 51 chr12 42541116 42541626 -101244829 + HAL1 LINE L1 114 665 -1842 259 125 21 0 chr12 42541719 42541767 -101244688 - MER52C LTR ERV1 0 1278 1230 2625 197 95 29 chr12 42541772 42542942 -101243513 - MER52A LTR ERV1 -243 1512 203 225 284 0 0 chr12 42543525 42543592 -101242863 - MER52A LTR ERV1 -1688 67 1 491 253 60 79 chr12 42543620 42544103 -101242352 + HAL1 LINE L1 793 1266 -1241 35 0 0 0 chr12 42544120 42544155 -101242300 + AT_rich Low_complexity Low_complexity 1 35 0 6233 156 25 13 chr12 42544155 42545657 -101240798 - L1MC1 LINE L1 -3 6330 4813 1236 247 17 39 chr12 42545657 42546139 -101240316 - L1MC1 LINE L1 -1621 4525 4055 2757 236 47 23 chr12 42546246 42546336 -101240119 + L1ME1 LINE L1 5150 5236 -930 1609 220 145 39 chr12 42546336 42546846 -101239609 - MLT1F1 LTR MaLR -1 566 3 2757 236 47 23 chr12 42546846 42547752 -101238703 + L1ME1 LINE L1 5236 6161 -5 426 271 103 19 chr12 42548031 42548186 -101238269 + MIR SINE MIR 14 181 -81 42160 40 1 1 chr12 42548187 42554333 -101232122 + L1PA3 LINE L1 7 6152 -3 3270 185 8 27 chr12 42555022 42556192 -101230263 + L1MC1 LINE L1 4668 5809 -524 597 203 20 0 chr12 42556206 42556354 -101230101 + L1M4 LINE L1 4404 4554 -1592 2201 144 71 22 chr12 42556408 42556819 -101229636 + L1MC1 LINE L1 5884 6314 -19 288 0 0 0 chr12 42557018 42557050 -101229405 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2507 84 3 3 chr12 42558119 42558430 -101228025 - AluSp SINE Alu -2 311 1 21 0 0 0 chr12 42558900 42558921 -101227534 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr12 42559007 42559031 -101227424 + AT_rich Low_complexity Low_complexity 1 24 0 201 39 0 0 chr12 42559443 42559469 -101226986 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 240 111 0 0 chr12 42559468 42559504 -101226951 + (CA)n Simple_repeat Simple_repeat 1 36 0 873 232 0 26 chr12 42560067 42560257 -101226198 + MER5A DNA MER1_type 1 185 -4 279 114 0 0 chr12 42560511 42560555 -101225900 + (CAT)n Simple_repeat Simple_repeat 1 44 0 688 271 4 59 chr12 42560558 42560794 -101225661 - MIR SINE MIR -8 254 32 201 324 15 0 chr12 42560832 42560900 -101225555 + MIR SINE MIR 11 79 -183 221 325 38 0 chr12 42561101 42561181 -101225274 + L2 LINE L2 2833 2915 -399 253 322 117 71 chr12 42561221 42561504 -101224951 + L2 LINE L2 2977 3272 0 291 225 38 0 chr12 42562267 42562347 -101224108 + (TA)n Simple_repeat Simple_repeat 1 83 0 194 128 26 0 chr12 42562975 42563014 -101223441 + GA-rich Low_complexity Low_complexity 1 40 0 1290 248 50 59 chr12 42563116 42563520 -101222935 + L2 LINE L2 2914 3313 0 1720 170 0 26 chr12 42563810 42564116 -101222339 - AluJb SINE Alu -14 298 1 25899 86 4 5 chr12 42565091 42566768 -101219687 + L1PA7 LINE L1 1518 3195 -2959 1572 141 122 11 chr12 42566768 42567031 -101219424 + AluSc SINE Alu 1 292 -17 25899 86 4 5 chr12 42567031 42569993 -101216462 + L1PA7 LINE L1 3195 6154 0 1552 220 142 13 chr12 42570002 42571057 -101215398 + L1M4 LINE L1 1719 2914 -3468 2169 120 0 3 chr12 42571840 42572131 -101214324 - AluSx SINE Alu -20 292 3 192 415 65 24 chr12 42572217 42572340 -101214115 - MIR3 SINE MIR -68 140 13 401 169 12 0 chr12 42572979 42573062 -101213393 + CT-rich Low_complexity Low_complexity 4 87 0 1135 310 101 26 chr12 42573131 42573793 -101212662 + L2 LINE L2 1936 2647 -667 195 279 103 0 chr12 42574264 42574332 -101212123 + L2 LINE L2 3198 3272 0 2348 71 0 35 chr12 42574526 42574837 -101211618 - AluY SINE Alu -11 300 1 245 254 70 0 chr12 42574897 42574968 -101211487 - MIR SINE MIR -90 172 97 1218 218 74 12 chr12 42575079 42575497 -101210958 + L1M4 LINE L1 4776 5219 -1163 1856 144 15 15 chr12 42575532 42575866 -101210589 + MER61A LTR ERV1 8 341 -2 291 255 9 9 chr12 42575888 42575994 -101210461 + L1M4 LINE L1 5228 5333 -1049 12027 138 41 23 chr12 42576139 42578966 -101207489 - L1P3 LINE L1 -3198 3263 353 360 0 0 0 chr12 42578966 42579006 -101207449 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 12027 138 41 23 chr12 42579006 42579356 -101207099 - L1P3 LINE L1 -6108 353 11 1084 175 18 45 chr12 42579354 42579565 -101206890 - L1M3 LINE L1 -503 5677 5481 * 2204 108 0 7 chr12 42579565 42579862 -101206593 + AluSc SINE Alu 1 295 -14 1084 175 18 45 chr12 42579862 42579934 -101206521 - L1M3 LINE L1 -699 5481 5409 1168 158 43 32 chr12 42580571 42580992 -101205463 - L1M3 LINE L1 -731 5443 5025 906 261 36 30 chr12 42580993 42581433 -101205022 - L1M4 LINE L1 -2971 4237 3795 3441 199 33 13 chr12 42581922 42582706 -101203749 - L1P LINE L1 -5336 810 11 13351 101 6 3 chr12 42582714 42584995 -101201460 - L1P LINE L1 -776 5370 3085 247 321 161 22 chr12 42585431 42585568 -101200887 + MIR3 SINE MIR 2 157 -51 254 279 0 23 chr12 42585717 42585803 -101200652 - MIR SINE MIR -2 260 177 516 297 147 23 chr12 42585816 42586075 -101200380 - LTR67 LTR ERVL 0 557 267 315 277 153 15 chr12 42586121 42586258 -101200197 - LTR67 LTR ERVL -400 157 2 387 273 97 16 chr12 42586271 42586419 -101200036 - MIR SINE MIR -68 140 13 2266 92 27 0 chr12 42588291 42588583 -101197872 - AluY SINE Alu -11 300 1 188 205 26 0 chr12 42588853 42588892 -101197563 - MIR SINE MIR -146 116 77 7049 116 36 6 chr12 42589006 42590414 -101196041 + L1MA2 LINE L1 4854 6304 0 198 361 8 42 chr12 42590541 42590660 -101195795 + L2 LINE L2 2939 3053 -219 180 0 0 0 chr12 42590824 42590844 -101195611 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 7299 267 53 13 chr12 42591191 42593173 -101193282 - L1M4 LINE L1 -5118 2091 1 3151 225 48 56 chr12 42593261 42594443 -101192012 + L1M4 LINE L1 825 1998 -4648 * 12337 126 10 31 chr12 42594442 42597007 -101189448 + L1P3 LINE L1 1 2567 -3894 404 143 12 0 chr12 42647852 42647936 -101138519 + CT-rich Low_complexity Low_complexity 3 87 0 235 308 0 0 chr12 42647938 42648003 -101138452 - L2 LINE L2 -1 3271 3207 1099 283 114 11 chr12 42648007 42648927 -101137528 - L1ME LINE L1 -503 5659 4640 518 333 22 48 chr12 42649091 42649322 -101137133 - MIR SINE MIR -18 244 20 369 0 0 0 chr12 42649676 42649717 -101136738 + (TG)n Simple_repeat Simple_repeat 1 41 0 1801 138 88 16 chr12 42649839 42650159 -101136296 + MER61A LTR ERV1 1 343 0 565 247 78 18 chr12 42651417 42651583 -101134872 + MER91A DNA MER1_type 1 176 -20 360 279 260 5 chr12 42652089 42652293 -101134162 - MIR SINE MIR -6 256 1 279 0 0 0 chr12 42653271 42653302 -101133153 + (TG)n Simple_repeat Simple_repeat 2 32 0 471 324 41 18 chr12 42653765 42653935 -101132520 + MIR3 SINE MIR 24 197 -11 837 169 59 18 chr12 42654298 42654517 -101131938 + Charlie1 DNA MER1_type 2533 2760 -1 684 231 84 74 chr12 42654521 42654724 -101131731 + MIR SINE MIR 12 216 -46 194 91 30 0 chr12 42654776 42654809 -101131646 + (GTTTG)n Simple_repeat Simple_repeat 4 37 0 293 357 0 0 chr12 42655462 42655560 -101130895 - MIR SINE MIR -111 151 54 382 0 0 0 chr12 42656290 42656337 -101130118 - MADE1 DNA Mariner -33 47 1 25 0 0 0 chr12 42656511 42656536 -101129919 + AT_rich Low_complexity Low_complexity 1 25 0 479 174 132 0 chr12 42656537 42656658 -101129797 + MER3 DNA MER1_type 73 209 0 231 185 77 0 chr12 42656618 42656683 -101129772 - MER3 DNA MER1_type -120 89 20 * 632 235 164 18 chr12 42656950 42657286 -101129169 + MER113 DNA MER1_type? 91 475 -46 344 224 0 0 chr12 42657296 42657372 -101129083 - MER113 DNA MER1_type? -445 76 1 220 276 57 76 chr12 42657433 42657538 -101128917 - L2 LINE L2 -31 3282 3180 279 54 0 0 chr12 42659564 42659601 -101126854 + (TG)n Simple_repeat Simple_repeat 2 38 0 1929 251 27 20 chr12 42660370 42660924 -101125531 + L2 LINE L2 1458 2015 -1299 335 212 0 0 chr12 42660938 42661004 -101125451 - AluJ/FRAM SINE Alu -16 286 221 13732 54 7 1 chr12 42661019 42663547 -101122908 - L1PA5 LINE L1 -3 6151 3610 380 287 11 0 chr12 42663568 42663662 -101122793 + L2 LINE L2 2721 2815 -499 359 308 227 31 chr12 42663637 42663786 -101122669 + L2 LINE L2 2924 3042 -271 * 2073 93 0 0 chr12 42663786 42664043 -101122412 + AluSc SINE Alu 36 292 -17 216 0 0 0 chr12 42664043 42664067 -101122388 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 359 308 227 31 chr12 42664067 42664237 -101122218 + L2 LINE L2 3041 3307 -6 2320 79 3 0 chr12 42664776 42665066 -101121389 + AluSp SINE Alu 16 306 -7 228 67 0 0 chr12 42666937 42666967 -101119488 + (A)n Simple_repeat Simple_repeat 1 30 0 243 339 53 47 chr12 42667262 42667433 -101119022 - L2 LINE L2 -12 3260 3089 882 141 65 0 chr12 42667677 42667861 -101118594 - L1MA4 LINE L1 -6 6294 6099 208 154 0 26 chr12 42668510 42668549 -101117906 + MIR SINE MIR 112 149 -113 363 246 67 37 chr12 42668582 42668716 -101117739 - MIR SINE MIR -37 225 88 23 0 0 0 chr12 42669358 42669381 -101117074 + AT_rich Low_complexity Low_complexity 1 23 0 223 242 158 11 chr12 42670299 42670394 -101116061 + MIR3 SINE MIR 98 206 -2 523 263 173 0 chr12 42670655 42670811 -101115644 + MIR SINE MIR 58 240 -22 6002 265 24 8 chr12 42671869 42673919 -101112536 - L1P LINE L1 -2604 3542 1459 195 42 0 0 chr12 42673943 42673967 -101112488 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 2074 112 31 3 chr12 42674080 42674367 -101112088 + AluSq SINE Alu 1 295 -18 347 380 22 13 chr12 42674419 42674643 -101111812 + L1 LINE L1 4205 4430 -1716 2131 132 0 0 chr12 42674708 42675011 -101111444 + AluSx SINE Alu 1 303 -9 215 229 0 21 chr12 42675224 42675272 -101111183 + GA-rich Low_complexity Low_complexity 2 48 0 270 207 0 52 chr12 42675638 42675696 -101110759 + L2 LINE L2 3214 3268 -4 23 33 0 0 chr12 42675888 42675918 -101110537 + AT_rich Low_complexity Low_complexity 1 30 0 631 237 42 45 chr12 42675980 42676202 -101110253 + L1MC4a LINE L1 5675 5809 -355 1879 158 39 0 chr12 42676465 42676801 -101109654 + L1MB1 LINE L1 5803 6151 -17 830 176 0 0 chr12 42676809 42676940 -101109515 + FLAM_A SINE Alu 3 133 0 21 0 0 0 chr12 42676982 42677003 -101109452 + AT_rich Low_complexity Low_complexity 1 21 0 483 255 37 26 chr12 42677705 42678042 -101108413 + L1MC5 LINE L1 7442 7677 -284 505 250 51 0 chr12 42678056 42678240 -101108215 + L1MC4 LINE L1 7847 7985 -10 210 300 180 30 chr12 42679641 42679741 -101106714 + L2 LINE L2 3171 3285 -28 417 134 49 0 chr12 42680457 42680539 -101105916 + MER113 DNA MER1_type? 1 86 -435 521 272 99 67 chr12 42680610 42680897 -101105558 + MLT1H LTR MaLR 49 341 -214 1630 195 96 0 chr12 42680897 42681230 -101105225 - MLT1A1 LTR MaLR 0 365 1 521 272 99 67 chr12 42681230 42681258 -101105197 + MLT1H LTR MaLR 341 367 -188 627 259 76 48 chr12 42682215 42682466 -101103989 + MIR SINE MIR 5 262 0 1779 144 40 17 chr12 42683946 42684294 -101102161 - L1MB8 LINE L1 -171 6007 5652 2102 101 42 3 chr12 42684520 42684806 -101101649 - AluY SINE Alu -14 297 1 226 261 109 22 chr12 42685243 42685269 -101101186 - MLT1I LTR MaLR -9 400 378 249 98 0 0 chr12 42685269 42685310 -101101145 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 226 261 109 22 chr12 42685310 42685375 -101101080 - MLT1I LTR MaLR -31 378 301 900 178 67 57 chr12 42685417 42685732 -101100723 + LTR65 LTR ERV1 9 326 -343 1027 183 22 49 chr12 42687421 42687645 -101098810 + MER20 DNA MER1_type 2 219 0 422 221 112 92 chr12 42688272 42688521 -101097934 - MIR SINE MIR -4 258 5 702 206 76 54 chr12 42688768 42688991 -101097464 - L1MB3 LINE L1 -7 6176 5949 30138 88 11 17 chr12 42689597 42694138 -101092317 - HERVH LTR ERV1 -115 7598 3086 2840 186 37 0 chr12 42694138 42694703 -101091752 + L1MB7 LINE L1 5580 6165 -19 635 266 55 88 chr12 42694994 42695378 -101091077 + LTR33 LTR ERVL 1 371 -150 2971 155 37 40 chr12 42695983 42696633 -101089822 - LTR65 LTR ERV1 -13 656 9 226 261 109 22 chr12 42696675 42696740 -101089715 + MLT1I LTR MaLR 301 378 -31 282 73 0 0 chr12 42696740 42696781 -101089674 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 226 261 109 22 chr12 42696781 42696807 -101089648 + MLT1I LTR MaLR 378 400 -9 2102 101 42 3 chr12 42697243 42697529 -101088926 + AluY SINE Alu 1 297 -14 2072 140 29 68 chr12 42697755 42698211 -101088244 + L1MB7 LINE L1 5652 6089 -95 1743 155 3 10 chr12 42698215 42698524 -101087931 - Tigger3b DNA MER2_type -1 1230 924 2174 132 24 16 chr12 42698526 42698897 -101087558 - THE1C LTR MaLR -1 374 1 * 4678 136 49 17 chr12 42698897 42699110 -101087345 - Tigger3b DNA MER2_type -2101 927 722 2191 123 0 0 chr12 42699110 42699402 -101087053 - AluSc SINE Alu -17 292 1 4678 136 49 17 chr12 42699402 42699490 -101086965 - Tigger3b DNA MER2_type -2306 722 638 2330 104 0 0 chr12 42699490 42699797 -101086658 - AluY SINE Alu -4 307 1 4678 136 49 17 chr12 42699797 42700392 -101086063 - Tigger3b DNA MER2_type -2390 638 1 360 141 0 0 chr12 42700394 42700458 -101085997 + L1MB8 LINE L1 6099 6162 -16 788 273 131 14 chr12 42701212 42701578 -101084877 + MLT1I LTR MaLR 1 409 0 183 233 0 0 chr12 42701990 42702033 -101084422 - L2 LINE L2 0 3313 3271 11995 159 19 19 chr12 42702408 42703373 -101083082 - L1MA3 LINE L1 0 6305 5342 2193 124 0 3 chr12 42703373 42703672 -101082783 + AluSq SINE Alu 1 298 -15 11995 159 19 19 chr12 42703672 42705596 -101080859 - L1MA3 LINE L1 -963 5342 3420 2215 101 7 14 chr12 42705596 42705892 -101080563 + AluSq SINE Alu 1 294 -19 11995 159 19 19 chr12 42705892 42706201 -101080254 - L1MA3 LINE L1 -2885 3420 3113 2224 112 0 10 chr12 42706201 42706513 -101079942 - AluSx SINE Alu -3 309 1 11995 159 19 19 chr12 42706513 42706926 -101079529 - L1MA3 LINE L1 -3192 3113 2676 6255 199 61 19 chr12 42707044 42709560 -101076895 + L1MB5 LINE L1 3544 6166 -8 * 10592 171 54 26 chr12 42709554 42709626 -101076829 + L1MC3 LINE L1 5310 5378 -2407 2032 163 17 6 chr12 42709626 42709988 -101076467 - MER47A DNA MER2_type 0 366 1 10592 171 54 26 chr12 42709988 42711685 -101074770 + L1MC3 LINE L1 5378 7026 -759 2038 115 45 0 chr12 42711685 42711973 -101074482 - AluSx SINE Alu -11 301 1 10592 171 54 26 chr12 42711973 42712343 -101074112 + L1MC3 LINE L1 7026 7384 -401 717 161 0 8 chr12 42712343 42712481 -101073974 + FLAM_C SINE Alu 2 138 0 2418 71 0 19 chr12 42712489 42712800 -101073655 - AluY SINE Alu -5 306 2 10592 171 54 26 chr12 42712800 42713056 -101073399 + L1MC3 LINE L1 7390 7785 0 250 359 21 7 chr12 42713333 42713475 -101072980 + L2 LINE L2 2817 2960 -353 301 253 22 11 chr12 42713475 42713566 -101072889 + CT-rich Low_complexity Low_complexity 1 92 0 418 240 0 0 chr12 42713692 42713796 -101072659 + MER53 DNA DNA 1 104 -85 2758 175 23 9 chr12 42713803 42714334 -101072121 + Tigger1 DNA MER2_type 1 538 -1880 430 248 319 34 chr12 42714338 42714604 -101071851 + L2 LINE L2 1565 1906 -1408 1653 162 96 3 chr12 42714608 42714941 -101071514 - MSTA LTR MaLR -64 364 1 1025 271 19 38 chr12 42714941 42715255 -101071200 + L2 LINE L2 2622 2929 -385 475 167 28 155 chr12 42715311 42715562 -101070893 - L1MC5 LINE L1 -897 7064 6846 374 312 82 43 chr12 42715633 42715777 -101070678 + MIR SINE MIR 23 181 -81 1850 144 23 59 chr12 42715777 42716166 -101070289 + THE1C LTR MaLR 1 375 0 374 312 82 43 chr12 42716166 42716252 -101070203 + MIR SINE MIR 181 262 0 288 294 64 0 chr12 42716344 42716453 -101070002 - MIR SINE MIR 0 262 147 386 319 80 0 chr12 42716502 42716640 -101069815 - MIR SINE MIR -108 154 6 477 193 0 11 chr12 42717461 42717549 -101068906 - AluS SINE Alu -226 87 1 1512 248 6 0 chr12 42718723 42719058 -101067397 - MER58B DNA MER1_type -4 337 1 181 280 0 0 chr12 42720186 42720236 -101066219 - L2 LINE L2 -69 3244 3195 2136 115 0 0 chr12 42720567 42720853 -101065602 + AluSc SINE Alu 3 288 -21 336 314 121 0 chr12 42722018 42722158 -101064297 + MIR SINE MIR 80 236 -26 2165 104 37 0 chr12 42722603 42722901 -101063554 - AluSx SINE Alu -3 309 1 433 260 233 0 chr12 42724155 42724305 -101062150 - MIR3 SINE MIR -14 194 10 695 242 115 6 chr12 42724369 42724551 -101061904 + MIR SINE MIR 15 216 -46 342 300 0 0 chr12 42724838 42724928 -101061527 + L1MC4 LINE L1 6614 6703 -1339 1499 161 45 0 chr12 42725207 42725493 -101060962 - MSTA LTR MaLR 0 428 130 5693 171 23 3 chr12 42725500 42726538 -101059917 - MSTA-int LTR MaLR -592 1059 1 2012 137 153 3 chr12 42726538 42726910 -101059545 - MSTA LTR MaLR 0 428 1 263 284 0 0 chr12 42726971 42727038 -101059417 - MER63A DNA MER1_type 0 210 144 383 224 48 72 chr12 42727283 42727408 -101059047 - MER63A DNA MER1_type 0 123 2 328 200 0 0 chr12 42727422 42727492 -101058963 - L1MC5 LINE L1 -172 7789 7720 744 213 7 26 chr12 42727544 42727699 -101058756 + AluJb SINE Alu 137 288 -24 1915 194 89 99 chr12 42727768 42728065 -101058390 - L1MC5 LINE L1 -387 7574 7276 198 0 0 0 chr12 42728065 42728087 -101058368 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1915 194 89 99 chr12 42728087 42728681 -101057774 - L1MC5 LINE L1 -685 7276 6692 386 249 170 106 chr12 42728747 42729248 -101057207 - L1MC4a LINE L1 -1215 6593 6061 313 253 20 0 chr12 42729377 42729476 -101056979 - L1MC4a LINE L1 -2290 5518 5418 387 313 61 25 chr12 42729518 42729716 -101056739 - L1MC4a LINE L1 -819 5327 5123 285 305 113 21 chr12 42730507 42730648 -101055807 - MIR SINE MIR -76 186 33 1469 150 77 22 chr12 42730703 42730976 -101055479 - AluJo SINE Alu -17 295 8 2098 199 90 36 chr12 42731096 42731684 -101054771 - LTR29 LTR ERV1 -2 620 1 550 184 0 0 chr12 42731786 42731873 -101054582 - AluJ/FLAM SINE Alu -225 87 1 1852 140 128 15 chr12 42731962 42732297 -101054158 - MER83C LTR ERV1 0 373 1 6482 175 38 40 chr12 42732301 42734958 -101051497 - MER83C-int LTR ERV1 -6 4863 12 1641 129 214 7 chr12 42734958 42735267 -101051188 - MER83C LTR ERV1 0 373 1 337 291 36 67 chr12 42735783 42736006 -101050449 + LTR67 LTR ERVL 96 311 -246 1264 47 18 0 chr12 42736579 42736750 -101049705 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 747 183 17 6 chr12 42736757 42736932 -101049523 + CT-rich Low_complexity Low_complexity 3 179 0 * 772 256 80 68 chr12 42736912 42737413 -101049042 + LTR38 LTR ERV1 39 545 -11 732 281 48 51 chr12 42737490 42737821 -101048634 + LTR38-int LTR ERV1 115 444 -1342 314 232 81 0 chr12 42738002 42738101 -101048354 + LTR38-int LTR ERV1 1547 1653 -2632 2653 334 51 41 chr12 42738145 42740738 -101045717 + LTR38-int LTR ERV1 925 4234 -3522 1810 306 51 59 chr12 42741026 42742729 -101043726 + LTR38-int LTR ERV1 4641 6374 -748 6238 80 12 10 chr12 42742729 42743819 -101042636 + L1PA10 LINE L1 5076 6167 0 11503 179 58 18 chr12 42743819 42745786 -101040669 + L1PB1 LINE L1 2767 4654 -2213 1772 83 0 4 chr12 42745786 42746014 -101040441 + AluY SINE Alu 82 308 -3 11503 179 58 18 chr12 42746014 42747967 -101038488 + L1PB1 LINE L1 4654 6859 -8 406 389 9 9 chr12 42747969 42748198 -101038257 + LTR38-int LTR ERV1 6645 6873 -249 1912 215 35 73 chr12 42748452 42749028 -101037427 - MLT2B3 LTR ERVL 0 554 1 628 259 85 41 chr12 42749086 42749426 -101037029 + LTR38 LTR ERV1 89 443 -113 4049 115 35 46 chr12 42749437 42750218 -101036237 + LTR1 LTR ERV1 12 783 -2 404 208 31 0 chr12 42750233 42750329 -101036126 + LTR36 LTR ERV1 503 601 -10 2540 53 0 3 chr12 42750347 42750649 -101035806 - AluY SINE Alu -10 301 1 27 49 0 0 chr12 42751223 42751264 -101035191 + AT_rich Low_complexity Low_complexity 1 41 0 742 281 142 35 chr12 42752831 42752920 -101033535 + L2 LINE L2 2909 2987 -326 2103 144 0 0 chr12 42752920 42753232 -101033223 - AluSx SINE Alu 0 312 1 742 281 142 35 chr12 42753232 42753508 -101032947 + L2 LINE L2 2987 3313 0 241 415 15 15 chr12 42753519 42753649 -101032806 - L2 LINE L2 -2 3270 3141 1700 191 3 3 chr12 42753712 42754011 -101032444 - AluJo SINE Alu -13 299 1 596 108 0 0 chr12 42754035 42754128 -101032327 - L1P LINE L1 -4297 1849 1757 1785 214 18 23 chr12 42754135 42754574 -101031881 - MLT2B3 LTR ERVL -117 437 1 483 313 43 80 chr12 42754774 42755022 -101031433 - HAL1 LINE L1 -742 1765 1532 415 295 9 9 chr12 42755022 42755134 -101031321 - MER81 DNA DNA 0 114 3 483 313 43 80 chr12 42755134 42755237 -101031218 - HAL1 LINE L1 -975 1532 1427 933 284 81 81 chr12 42755258 42755878 -101030577 - HAL1 LINE L1 -1884 623 4 429 283 21 69 chr12 42755878 42756111 -101030344 - L1MEd LINE L1 -5175 944 723 230 177 0 97 chr12 42756203 42756265 -101030190 - L1MEd LINE L1 -5543 576 521 532 295 45 34 chr12 42756355 42756623 -101029832 - L1MEd LINE L1 -5737 382 112 3795 285 39 24 chr12 42756831 42758429 -101028026 + L1PBa LINE L1 3 1624 -5239 * 11797 197 29 34 chr12 42758409 42761095 -101025360 + L1PB3 LINE L1 1 2699 -3512 263 28 28 0 chr12 42761095 42761131 -101025324 + (TA)n Simple_repeat Simple_repeat 1 37 0 11797 197 29 34 chr12 42761131 42764469 -101021986 + L1PB3 LINE L1 2699 5841 -370 762 93 0 0 chr12 42764469 42764577 -101021878 + (TA)n Simple_repeat Simple_repeat 1 108 0 11797 197 29 34 chr12 42764577 42764947 -101021508 + L1PB3 LINE L1 5841 6211 0 1074 226 25 80 chr12 42765496 42765859 -101020596 - MLT1D LTR MaLR 0 505 163 2306 200 60 122 chr12 42765861 42766707 -101019748 + MER21B LTR ERV1 1 794 -69 571 210 31 72 chr12 42766736 42766931 -101019524 - MLT1D LTR MaLR -439 187 1 241 326 80 38 chr12 42766945 42767209 -101019246 - L2 LINE L2 -962 2352 2078 2069 76 0 4 chr12 42767263 42767549 -101018906 - AluSq SINE Alu 0 320 36 1723 155 3 56 chr12 42767557 42767861 -101018594 - AluJb SINE Alu -24 288 1 874 206 0 0 chr12 42768016 42768181 -101018274 + FRAM SINE Alu 1 165 -1 1082 153 12 0 chr12 42768426 42768644 -101017811 + AluSq SINE Alu 140 359 0 245 333 0 0 chr12 42770420 42770492 -101015963 - MIR SINE MIR -71 191 120 198 343 51 81 chr12 42770830 42771162 -101015293 + L2 LINE L2 2437 2758 -556 722 257 105 0 chr12 42771195 42771405 -101015050 - MIR SINE MIR -2 260 29 276 368 9 0 chr12 42772409 42772523 -101013932 - L2 LINE L2 -2 3311 3197 594 134 55 0 chr12 42772937 42773101 -101013354 + GA-rich Low_complexity Low_complexity 1 173 0 314 302 60 40 chr12 42773734 42773883 -101012572 - L2 LINE L2 -1 3312 3161 579 218 163 14 chr12 42774388 42774677 -101011778 - HAL1b LINE L1 -2 1346 1015 23 54 0 0 chr12 42774940 42774977 -101011478 + AT_rich Low_complexity Low_complexity 1 37 0 355 335 180 0 chr12 42774988 42775155 -101011300 - MIR SINE MIR -34 228 32 878 214 47 119 chr12 42775225 42775356 -101011099 - HAL1b LINE L1 -701 647 508 1428 179 95 0 chr12 42775356 42775619 -101010836 - AluJo SINE Alu -24 288 1 878 214 47 119 chr12 42775619 42775636 -101010819 - HAL1b LINE L1 -840 508 491 4075 36 27 11 chr12 42775636 42776159 -101010296 - L1PA8 LINE L1 -1 6171 5641 878 214 47 119 chr12 42776159 42776607 -101009848 - HAL1b LINE L1 -857 491 93 486 280 47 3 chr12 42777352 42777509 -101008946 + MIR SINE MIR 3 173 -61 1375 108 38 0 chr12 42777510 42777696 -101008759 - AluSg/x SINE Alu -12 298 106 403 284 0 0 chr12 42777699 42777794 -101008661 + MIR SINE MIR 168 262 0 3287 180 42 44 chr12 42777949 42778789 -101007666 + L1MD2 LINE L1 5520 6357 -2 1085 87 0 7 chr12 42779148 42779298 -101007157 - THE1B LTR MaLR 0 364 216 589 317 36 27 chr12 42780121 42780342 -101006113 - MIR SINE MIR -37 225 3 571 255 90 79 chr12 42780342 42780620 -101005835 + L2 LINE L2 3030 3310 -3 357 276 49 8 chr12 42781038 42781161 -101005294 - MIR SINE MIR -49 213 86 2021 165 0 14 chr12 42781242 42781593 -101004862 + MER7A DNA MER2_type 2 345 -1 1873 154 78 47 chr12 42782568 42782952 -101003503 + MSTD LTR MaLR 1 396 0 547 300 29 38 chr12 42783011 42783044 -101003411 - MER63A DNA MER1_type -1479 209 177 2384 128 63 28 chr12 42783044 42783306 -101003149 - MER65A LTR ERV1 0 445 194 225 0 0 0 chr12 42783306 42783331 -101003124 + (TA)n Simple_repeat Simple_repeat 2 26 0 387 0 0 0 chr12 42783331 42783374 -101003081 + (TG)n Simple_repeat Simple_repeat 1 43 0 2384 128 63 28 chr12 42783374 42783540 -101002915 - MER65A LTR ERV1 -250 195 1 547 300 29 38 chr12 42783540 42783716 -101002739 - MER63A DNA MER1_type -1511 177 2 7180 130 17 1 chr12 42785942 42788334 -100998121 - L1MA3 LINE L1 0 7724 5294 * 8136 140 31 12 chr12 42788330 42790416 -100996039 - L1MA3 LINE L1 -3224 4341 2214 3084 143 22 0 chr12 42790412 42790917 -100995538 - L1MA3 LINE L1 -6100 1465 950 * 403 301 25 74 chr12 42790930 42791133 -100995322 - L2 LINE L2 -3 3269 3077 635 196 0 0 chr12 42791170 42791277 -100995178 - FLAM_A SINE Alu -25 117 11 2317 69 42 0 chr12 42791393 42791682 -100994773 + AluSq SINE Alu 2 302 -11 1101 285 29 24 chr12 42793431 42793813 -100992642 + MLT1H1 LTR MaLR 56 439 -116 350 200 40 0 chr12 42793933 42794008 -100992447 + MLT1H1 LTR MaLR 448 525 -30 211 331 98 16 chr12 42794559 42794743 -100991712 + L2 LINE L2 3113 3311 -2 352 225 348 0 chr12 42794850 42794988 -100991467 - MIR3 SINE MIR -6 202 17 240 35 0 0 chr12 42795096 42795125 -100991330 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1590 199 4 0 chr12 42795136 42795412 -100991043 - AluJo SINE Alu -35 277 1 369 308 68 0 chr12 42795785 42795902 -100990553 - L2 LINE L2 0 3272 3148 681 266 93 36 chr12 42796617 42796865 -100989590 - MIR SINE MIR 0 262 1 237 296 176 0 chr12 42796874 42797033 -100989422 + L1MC4a LINE L1 4747 4933 -1213 21 0 0 0 chr12 42797198 42797219 -100989236 + AT_rich Low_complexity Low_complexity 1 21 0 257 301 86 16 chr12 42797252 42797438 -100989017 + L1MC4a LINE L1 5270 5468 -2340 340 318 61 50 chr12 42797534 42797930 -100988525 + L1MC4a LINE L1 5512 5911 -1897 1953 121 63 33 chr12 42798474 42798838 -100987617 + THE1C LTR MaLR 1 375 0 298 303 174 7 chr12 42798838 42798993 -100987462 + L2 LINE L2 3128 3308 -5 296 236 132 27 chr12 42799406 42799731 -100986724 - L1MC4a LINE L1 -13 6108 5748 877 246 29 10 chr12 42799755 42799962 -100986493 + MIR SINE MIR 35 245 -17 188 178 0 178 chr12 42801422 42801495 -100984960 + L3 LINE CR1 250 309 -1268 470 232 105 55 chr12 42802001 42802182 -100984273 + MIR3 SINE MIR 13 202 -6 1514 174 35 65 chr12 42802260 42802663 -100983792 + L1MB7 LINE L1 5793 6183 -1 236 169 0 17 chr12 42802673 42802732 -100983723 + (TATG)n Simple_repeat Simple_repeat 3 60 0 212 189 61 61 chr12 42803409 42803588 -100982867 + (TTTAA)n Simple_repeat Simple_repeat 1 179 0 426 139 14 0 chr12 42803590 42803661 -100982794 + Tigger5 DNA MER2_type 7 78 -2245 308 130 56 0 chr12 42803661 42803715 -100982740 - Tigger5 DNA MER2_type -3 2320 2264 * 395 161 0 0 chr12 42803713 42803775 -100982680 + Tigger5 DNA MER2_type 2262 2323 0 614 282 101 21 chr12 42803805 42804280 -100982175 - HAL1 LINE L1 -739 1768 1256 2334 99 3 0 chr12 42804380 42804692 -100981763 - AluSq SINE Alu 0 313 1 250 323 116 53 chr12 42805505 42805694 -100980761 + MIR SINE MIR 18 218 -44 22 0 0 0 chr12 42807939 42807961 -100978494 + AT_rich Low_complexity Low_complexity 1 22 0 862 236 21 29 chr12 42808744 42808985 -100977470 - MIR SINE MIR -15 247 9 210 150 0 0 chr12 42809055 42809095 -100977360 + (CA)n Simple_repeat Simple_repeat 2 41 0 4767 36 0 12 chr12 42810466 42811134 -100975321 - L1PA5 LINE L1 -296 5858 5199 2417 53 0 3 chr12 42811134 42811435 -100975020 + L1PA5 LINE L1 5848 6149 -5 410 309 61 17 chr12 42811729 42811910 -100974545 - MER5A DNA MER1_type 0 189 1 183 156 0 0 chr12 42812117 42812149 -100974306 + (CA)n Simple_repeat Simple_repeat 2 33 0 1011 274 79 83 chr12 42812599 42812783 -100973672 - L2 LINE L2 -16 3297 3114 273 57 0 0 chr12 42812783 42812818 -100973637 + (TG)n Simple_repeat Simple_repeat 2 36 0 1011 274 79 83 chr12 42812818 42812954 -100973501 - L2 LINE L2 -199 3114 2979 1491 158 97 0 chr12 42812954 42813213 -100973242 + AluJo SINE Alu 2 285 -27 342 80 0 0 chr12 42813213 42813263 -100973192 + (CA)n Simple_repeat Simple_repeat 2 51 0 1011 274 79 83 chr12 42813263 42813422 -100973033 - L2 LINE L2 -332 2981 2818 * 3353 250 152 18 chr12 42813420 42814614 -100971841 - L2 LINE L2 -839 2475 1123 1239 252 78 30 chr12 42814619 42815092 -100971363 - LTR33 LTR ERVL -21 500 5 394 250 0 23 chr12 42815092 42815180 -100971275 - L2 LINE L2 -2185 1129 1044 14099 130 32 2 chr12 42815183 42817514 -100968941 - Tigger1 DNA MER2_type -1 2417 16 1112 243 76 7 chr12 42817524 42817828 -100968627 - L2 LINE L2 -2270 1044 720 1997 128 3 29 chr12 42818560 42818866 -100967589 - AluSx SINE Alu -14 298 1 268 311 18 0 chr12 42819106 42819270 -100967185 + L1MC/D LINE L1 4370 4536 -1610 409 323 67 56 chr12 42819585 42819941 -100966514 + L1MC/D LINE L1 4883 5242 -904 1203 114 0 0 chr12 42819958 42820116 -100966339 + FRAM SINE Alu 1 158 -18 253 342 53 38 chr12 42820172 42820514 -100965941 + L1MC/D LINE L1 5296 5642 -520 268 301 31 41 chr12 42820577 42820773 -100965682 + L1MC/D LINE L1 5690 5883 -1925 457 299 122 27 chr12 42820782 42821003 -100965452 - MIR SINE MIR -13 249 8 25 0 0 0 chr12 42821253 42821278 -100965177 + AT_rich Low_complexity Low_complexity 1 25 0 1059 257 94 58 chr12 42821385 42821964 -100964491 - L2 LINE L2 0 3313 2708 390 274 47 16 chr12 42822511 42822701 -100963754 - LTR16C LTR ERVL -1 490 295 239 313 12 24 chr12 42823183 42823266 -100963189 + Charlie8 DNA MER1_type 2 83 -2334 1529 172 65 28 chr12 42823466 42823757 -100962698 - AluJo SINE Alu -10 302 1 508 173 261 81 chr12 42823810 42823846 -100962609 - LTR37B LTR ERV1 -100 368 340 1383 209 49 3 chr12 42823846 42824133 -100962322 + AluJb SINE Alu 1 300 -12 508 173 261 81 chr12 42824133 42824356 -100962099 - LTR37B LTR ERV1 -128 340 62 992 82 63 13 chr12 42824400 42824559 -100961896 - L1PA13 LINE L1 -4 6159 5993 339 284 53 0 chr12 42824560 42824655 -100961800 - MER5B DNA MER1_type -40 138 39 547 265 84 53 chr12 42825010 42825420 -100961035 - L1ME LINE L1 -493 5671 5254 823 274 68 69 chr12 42826985 42827561 -100958894 + MER31-int LTR ERV1 3327 3901 -1035 501 264 39 39 chr12 42827571 42827753 -100958702 + MER31-int LTR ERV1 3878 4059 -877 363 261 43 14 chr12 42827855 42827993 -100958462 + MER31-int LTR ERV1 4104 4245 -691 992 180 49 70 chr12 42828077 42828222 -100958233 + LTR37A LTR ERV1 54 201 -225 906 65 16 0 chr12 42828222 42828346 -100958109 + L1PA2 LINE L1 6026 6151 -4 992 180 49 70 chr12 42828346 42828527 -100957928 + LTR37A LTR ERV1 201 373 -53 300 277 46 31 chr12 42828575 42828705 -100957750 - L1ME LINE L1 -1133 5013 4882 2339 186 26 72 chr12 42829053 42829633 -100956822 + MLT2B3 LTR ERVL 2 554 0 727 168 168 6 chr12 42832718 42832879 -100953576 - MER5A DNA MER1_type -2 187 1 2381 92 3 0 chr12 42837206 42837541 -100948914 + THE1B LTR MaLR 1 336 -28 34145 97 10 10 chr12 42837544 42843680 -100942775 - L1PA6 LINE L1 -11 6143 11 333 106 0 0 chr12 42843683 42843730 -100942725 + THE1B LTR MaLR 318 364 0 2131 73 16 73 chr12 42844803 42845119 -100941336 + AluY SINE Alu 1 298 -13 477 0 0 0 chr12 42846903 42846956 -100939499 + (TG)n Simple_repeat Simple_repeat 2 54 0 1757 148 0 50 chr12 42846956 42847254 -100939201 - AluJo SINE Alu -29 283 1 302 209 0 15 chr12 42847977 42848044 -100938411 - L1MCa LINE L1 -4362 2064 1999 233 310 35 10 chr12 42849087 42849216 -100937239 - MIR SINE MIR -111 151 20 2071 146 3 0 chr12 42849506 42849814 -100936641 + AluJb SINE Alu 1 309 -3 27 73 0 0 chr12 42852187 42852242 -100934213 + AT_rich Low_complexity Low_complexity 1 55 0 25 65 0 0 chr12 42853841 42853887 -100932568 + AT_rich Low_complexity Low_complexity 1 46 0 219 370 30 10 chr12 42857129 42857229 -100929226 + MIR3 SINE MIR 87 188 -20 184 267 58 64 chr12 42857673 42857845 -100928610 + L2 LINE L2 2931 3101 -171 2193 115 36 38 chr12 42858132 42858497 -100927958 + THE1B LTR MaLR 1 364 0 1031 327 166 37 chr12 42860270 42861111 -100925344 - L3 LINE CR1 -2 1575 626 387 284 192 35 chr12 42861108 42861369 -100925086 + L2 LINE L2 2401 2702 -612 * 424 313 75 9 chr12 42861529 42861743 -100924712 - L3 LINE CR1 -1108 469 242 479 230 50 4 chr12 42862124 42862302 -100924153 + L1ME1 LINE L1 6030 6349 0 374 197 0 0 chr12 42862638 42862709 -100923746 - MER5A DNA MER1_type -100 89 19 1896 86 21 4 chr12 42863012 42863255 -100923200 - AluSx SINE Alu -17 295 49 2029 112 0 30 chr12 42864164 42864467 -100921988 + AluSx SINE Alu 1 294 -18 754 211 184 9 chr12 42864676 42864899 -100921556 - MIR SINE MIR 0 262 1 327 237 123 61 chr12 42866124 42866188 -100920267 + MIR SINE MIR 64 123 -139 3265 162 19 70 chr12 42866188 42866916 -100919539 - LTR8 LTR ERV1 0 691 1 327 237 123 61 chr12 42866916 42866965 -100919490 + MIR SINE MIR 123 184 -78 353 236 18 27 chr12 42866997 42867107 -100919348 - MER58 DNA MER1_type -2311 109 1 205 191 0 0 chr12 42868787 42868829 -100917626 + GA-rich Low_complexity Low_complexity 1 42 0 374 337 48 82 chr12 42869217 42869671 -100916784 - L2 LINE L2 0 3272 2834 226 336 10 0 chr12 42870141 42870245 -100916210 - L1MC/D LINE L1 -1950 5858 5754 601 227 97 27 chr12 42870729 42870914 -100915541 + MIR SINE MIR 9 206 -56 243 0 0 0 chr12 42871048 42871075 -100915380 + (CA)n Simple_repeat Simple_repeat 1 27 0 24 0 0 0 chr12 42871412 42871436 -100915019 + AT_rich Low_complexity Low_complexity 1 24 0 1581 268 111 26 chr12 42872642 42873411 -100913044 + HAL1 LINE L1 74 907 -1600 1164 210 72 34 chr12 42873420 42873806 -100912649 + L1MC5 LINE L1 7390 7790 -171 1906 223 131 43 chr12 42873904 42874208 -100912247 + HAL1 LINE L1 961 1237 -1270 2081 88 49 33 chr12 42874208 42874515 -100911940 - AluSx SINE Alu 0 312 1 1906 223 131 43 chr12 42874515 42875017 -100911438 + HAL1 LINE L1 1237 1838 -669 532 198 108 18 chr12 42875018 42875129 -100911326 + MIR SINE MIR 109 229 -33 446 341 12 12 chr12 42875314 42875478 -100910977 - MIR3 SINE MIR -1 207 44 21 36 0 0 chr12 42876641 42876669 -100909786 + AT_rich Low_complexity Low_complexity 1 28 0 221 347 107 33 chr12 42877385 42877535 -100908920 + L2 LINE L2 3087 3247 -25 263 241 0 0 chr12 42877808 42877866 -100908589 - L2 LINE L2 -14 3258 3201 448 275 22 14 chr12 42878039 42878177 -100908278 + MIR SINE MIR 116 254 -8 3832 139 39 5 chr12 42878389 42879035 -100907420 + L1PB4 LINE L1 5488 6155 -1 1566 136 152 0 chr12 42879261 42879511 -100906944 - AluSg SINE Alu -22 288 1 1265 166 92 37 chr12 42880265 42880591 -100905864 + MER2 DNA MER2_type 1 344 0 180 0 0 0 chr12 42880609 42880629 -100905826 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1714 178 0 17 chr12 42880632 42880919 -100905536 - AluJo SINE Alu -30 282 1 2232 61 0 0 chr12 42882031 42882310 -100904145 - AluY SINE Alu 0 311 33 630 236 118 47 chr12 42883664 42883808 -100902647 - MIR SINE MIR -20 242 77 957 54 78 0 chr12 42883808 42883937 -100902518 + MER85 DNA T2_type 1 139 0 630 236 118 47 chr12 42883937 42884004 -100902451 - MIR SINE MIR -185 77 16 401 236 166 32 chr12 42884004 42884185 -100902270 - MIR SINE MIR -58 204 10 192 306 129 12 chr12 42884248 42884333 -100902122 - L2 LINE L2 -40 3232 3138 544 201 148 6 chr12 42884344 42884489 -100901966 + MER5A DNA MER1_type 6 174 -15 280 276 0 0 chr12 42885619 42885677 -100900778 + MIR SINE MIR 83 140 -68 2170 87 3 71 chr12 42886906 42887229 -100899226 - AluSx SINE Alu 0 312 12 2225 97 3 0 chr12 42887805 42888093 -100898362 - AluSp SINE Alu -24 289 1 274 167 0 0 chr12 42888579 42888621 -100897834 + 5S rRNA rRNA 1 42 -79 220 302 0 16 chr12 42889622 42889685 -100896770 + (TATG)n Simple_repeat Simple_repeat 3 64 0 26 0 0 0 chr12 42889796 42889822 -100896633 + AT_rich Low_complexity Low_complexity 1 26 0 1476 158 37 128 chr12 42890087 42890415 -100896040 + AluJb SINE Alu 1 298 -4 216 302 16 0 chr12 42890496 42890559 -100895896 + CT-rich Low_complexity Low_complexity 3 66 0 217 161 54 0 chr12 42890661 42890717 -100895738 + (TTAA)n Simple_repeat Simple_repeat 3 61 0 358 222 31 74 chr12 42890717 42890879 -100895576 - L1ME4a LINE L1 -18 6103 5949 326 140 0 0 chr12 42890879 42890929 -100895526 + L2 LINE L2 3264 3313 0 255 103 0 0 chr12 42891743 42891782 -100894673 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 287 234 0 39 chr12 42892011 42892088 -100894367 + MLT1J LTR MaLR 94 167 -344 641 209 120 39 chr12 42892488 42892747 -100893708 - L1MC5 LINE L1 -33 7928 7649 1949 162 9 19 chr12 42892898 42893260 -100893195 + L1MA9 LINE L1 5328 5687 -625 622 168 10 10 chr12 42893260 42893361 -100893094 + AluJb SINE Alu 197 297 -15 38149 90 7 9 chr12 42893638 42896472 -100889983 + L1PA6 LINE L1 13 2852 -3302 2373 98 0 0 chr12 42896472 42896777 -100889678 + AluY SINE Alu 1 305 -6 38149 90 7 9 chr12 42896777 42900083 -100886372 + L1PA6 LINE L1 2852 6139 -15 41 58 0 0 chr12 42900094 42900163 -100886292 + AT_rich Low_complexity Low_complexity 1 69 0 240 228 19 99 chr12 42900175 42900337 -100886118 - L1ME4a LINE L1 -18 6103 5955 1818 190 24 46 chr12 42900347 42900762 -100885693 + L1MA9 LINE L1 5691 6096 -216 275 146 0 0 chr12 42900762 42900803 -100885652 - MER46B DNA MER2_type 0 236 196 4456 98 4 0 chr12 42900803 42901355 -100885100 - MER41A LTR ERV1 0 554 1 5949 94 34 6 chr12 42901355 42902924 -100883531 - MER41A-int LTR ERV1 -2 5944 4250 5197 103 49 30 chr12 42902943 42903480 -100882975 - MER41A-int LTR ERV1 -2354 3969 3444 2353 88 3 13 chr12 42903480 42903785 -100882670 + AluY SINE Alu 1 302 -9 5197 103 49 30 chr12 42903785 42904197 -100882258 - MER41A-int LTR ERV1 -2879 3444 355 5040 132 78 16 chr12 42904188 42904212 -100882243 - MER41A-int LTR ERV1 -4839 1107 1086 * 216 0 0 0 chr12 42904212 42904236 -100882219 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 225 0 0 0 chr12 42904235 42904260 -100882195 + (GA)n Simple_repeat Simple_repeat 2 26 0 5040 132 78 16 chr12 42904236 42905195 -100881260 - MER41A-int LTR ERV1 -4860 1086 1 258 169 325 0 chr12 42905288 42905365 -100881090 - MER41A-int LTR ERV1 -5844 102 1 3825 103 80 4 chr12 42905431 42905946 -100880509 - MER41A LTR ERV1 0 554 1 1813 139 12 70 chr12 42905946 42906252 -100880203 - MER46B DNA MER2_type -2532 199 39 2083 150 0 0 chr12 42906252 42906552 -100879903 - AluSx SINE Alu -12 300 1 1813 139 12 70 chr12 42906552 42906589 -100879866 - MER46B DNA MER2_type -2692 39 1 934 197 22 11 chr12 42906589 42906772 -100879683 + L1MA9 LINE L1 6095 6279 -33 267 221 0 39 chr12 42907097 42907174 -100879281 + L1ME2 LINE L1 6091 6164 0 700 267 42 11 chr12 42907522 42907713 -100878742 + MIR SINE MIR 31 227 -35 300 214 51 68 chr12 42908036 42908153 -100878302 + MIR3 SINE MIR 87 201 -7 198 326 154 36 chr12 42908111 42908448 -100878007 + L2 LINE L2 2231 2607 -707 * 1119 183 22 49 chr12 42909414 42909638 -100876817 + MER20 DNA MER1_type 2 219 0 401 193 26 61 chr12 42910456 42910570 -100875885 + MIR3 SINE MIR 94 203 -5 455 265 11 70 chr12 42910651 42910836 -100875619 - MER5B DNA MER1_type 0 178 5 614 302 142 0 chr12 42910877 42911145 -100875310 - MER102b DNA MER1_type -32 309 4 509 353 6 0 chr12 42911582 42911738 -100874717 + MER5B DNA MER1_type 21 177 -1 413 195 70 70 chr12 42911847 42911975 -100874480 - MIR SINE MIR -70 192 65 25 31 0 0 chr12 42912128 42912160 -100874295 + AT_rich Low_complexity Low_complexity 1 32 0 1133 184 9 19 chr12 42912217 42912429 -100874026 - L1PB3 LINE L1 0 6154 5945 193 319 42 0 chr12 42912591 42912663 -100873792 - MIR3 SINE MIR -2 206 132 370 317 54 85 chr12 42912687 42912911 -100873544 - MIR SINE MIR -34 228 12 227 233 0 0 chr12 42913761 42913804 -100872651 - L2 LINE L2 -8 3305 3263 412 276 126 20 chr12 42914057 42914303 -100872152 + L2 LINE L2 2942 3213 -100 306 307 128 67 chr12 42916856 42917231 -100869224 - L1M2 LINE L1 -5450 1399 1002 401 248 145 47 chr12 42918526 42918740 -100867715 - MIR SINE MIR -6 256 22 291 332 144 16 chr12 42918913 42919100 -100867355 - MIR SINE MIR -13 249 39 1417 194 17 24 chr12 42920469 42920758 -100865697 - AluJo SINE Alu -25 287 1 305 260 114 65 chr12 42921014 42921037 -100865418 + MIR SINE MIR 134 154 -108 2352 127 83 39 chr12 42921037 42921446 -100865009 + MSTA LTR MaLR 2 428 0 305 260 114 65 chr12 42921446 42921545 -100864910 + MIR SINE MIR 154 262 0 2277 104 0 3 chr12 42921807 42922105 -100864350 + AluSp SINE Alu 1 297 -16 1013 260 12 8 chr12 42922195 42922445 -100864010 + MIR SINE MIR 12 262 0 2563 179 29 6 chr12 42923206 42923682 -100862773 + L1MB4 LINE L1 5689 6175 -5 810 169 15 0 chr12 42923831 42923961 -100862494 + AluSq/x SINE Alu 2 133 -180 5850 160 14 3 chr12 42923965 42924985 -100861470 - L1PA5 LINE L1 -5 6149 5105 231 36 0 0 chr12 42924985 42925013 -100861442 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5850 160 14 3 chr12 42925013 42925558 -100860897 - L1PA5 LINE L1 -1049 5105 4567 * 16875 138 18 11 chr12 42925551 42928220 -100858235 - L1M1 LINE L1 -4144 3421 736 2285 107 0 0 chr12 42928679 42928979 -100857476 - AluSx SINE Alu -12 300 1 4033 174 31 4 chr12 42929177 42929884 -100856571 + L1MB4 LINE L1 5450 6175 -5 810 169 15 0 chr12 42930033 42930163 -100856292 + AluSq/x SINE Alu 2 133 -180 19044 50 3 0 chr12 42930167 42933191 -100853264 - L1PA5 LINE L1 -7 6147 3115 223 301 108 0 chr12 42933225 42933318 -100853137 - MIR SINE MIR -157 105 3 558 275 68 108 chr12 42933569 42934215 -100852240 - L2 LINE L2 -8 3264 2637 2162 85 0 11 chr12 42934521 42934830 -100851625 - AluSg1 SINE Alu 0 306 1 271 206 27 14 chr12 42935170 42935243 -100851212 - MER116 DNA Mariner 0 80 7 303 186 34 0 chr12 42935654 42935713 -100850742 - L1ME LINE L1 -336 5834 5774 210 189 0 19 chr12 42935769 42935822 -100850633 + T-rich Low_complexity Low_complexity 2 53 0 2232 78 55 0 chr12 42935824 42936064 -100850391 - L1PB1 LINE L1 -119 6032 5770 198 0 0 0 chr12 42936064 42936086 -100850369 + (TG)n Simple_repeat Simple_repeat 2 23 0 2232 78 55 0 chr12 42936086 42936152 -100850303 - L1PB1 LINE L1 -381 5770 5709 278 223 139 127 chr12 42936158 42936324 -100850131 + MIR SINE MIR 13 180 -82 332 255 31 23 chr12 42936379 42936499 -100849956 - MIR SINE MIR -69 139 20 21 0 0 0 chr12 42936661 42936682 -100849773 + AT_rich Low_complexity Low_complexity 1 21 0 1746 186 0 13 chr12 42937156 42937467 -100848988 + AluJb SINE Alu 1 307 -5 565 268 55 75 chr12 42938916 42939300 -100847155 - MER68 LTR ERV1 -31 531 156 225 257 80 91 chr12 42939308 42939483 -100846972 - MER77 LTR ERV1 -432 173 1 259 248 27 128 chr12 42939790 42939859 -100846596 - L2 LINE L2 -5 3308 3260 2388 95 0 0 chr12 42939859 42940165 -100846290 - AluY SINE Alu -5 306 1 259 248 27 128 chr12 42940165 42940244 -100846211 - L2 LINE L2 -53 3260 3175 434 152 51 13 chr12 42940404 42940483 -100845972 + MER81 DNA DNA 1 82 -32 209 200 0 0 chr12 42941060 42941100 -100845355 + CT-rich Low_complexity Low_complexity 1 40 0 1735 114 114 7 chr12 42941103 42941376 -100845079 - AluJb SINE Alu -10 302 1 620 228 15 37 chr12 42941435 42941571 -100844884 - FLAM_A SINE Alu 0 133 1 322 227 35 92 chr12 42942123 42942264 -100844191 + MER5A DNA MER1_type 35 167 -22 192 204 114 0 chr12 42942410 42942454 -100844001 - L2 LINE L2 -3 3269 3221 216 0 0 0 chr12 42942503 42942527 -100843928 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 220 213 0 0 chr12 42942712 42942759 -100843696 + (CATTA)n Simple_repeat Simple_repeat 3 49 0 242 320 0 13 chr12 42946456 42946534 -100839921 + L2 LINE L2 3234 3310 -3 25 31 0 0 chr12 42947169 42947201 -100839254 + AT_rich Low_complexity Low_complexity 1 32 0 201 39 0 0 chr12 42948206 42948232 -100838223 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 22 35 0 0 chr12 42949132 42949161 -100837294 + AT_rich Low_complexity Low_complexity 1 29 0 1079 133 92 20 chr12 42950823 42951018 -100835437 - Tigger4(Zombi) DNA MER2_type 0 2731 2523 505 130 87 11 chr12 42950999 42951091 -100835364 - Tigger4(Zombi) DNA MER2_type -2589 142 44 * 192 262 111 78 chr12 42952281 42952434 -100834021 + MIR SINE MIR 36 192 -66 1246 194 109 42 chr12 42952493 42952776 -100833679 + AluJo SINE Alu 1 302 0 22 56 0 0 chr12 42954741 42954777 -100831678 + GC_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr12 42955416 42955439 -100831016 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr12 42955859 42955880 -100830575 + AT_rich Low_complexity Low_complexity 1 21 0 205 181 48 36 chr12 42956123 42956206 -100830249 + (CCCCG)n Simple_repeat Simple_repeat 5 88 0 308 242 100 84 chr12 42958281 42958471 -100827984 - MER112 DNA MER1_type -2 258 66 269 174 0 138 chr12 42958507 42958555 -100827900 - MER112 DNA MER1_type -166 94 68 2102 137 62 12 chr12 42958555 42958876 -100827579 + MER1B DNA MER1_type 1 337 0 269 174 0 138 chr12 42958876 42958936 -100827519 - MER112 DNA MER1_type -192 68 1 1637 210 125 51 chr12 42959353 42959516 -100826939 + MLT1F1 LTR MaLR 1 150 -417 2317 97 7 0 chr12 42959516 42959816 -100826639 + AluSp SINE Alu 1 302 -11 1637 210 125 51 chr12 42959816 42960183 -100826272 + MLT1F1 LTR MaLR 150 567 0 650 231 28 44 chr12 42960586 42960768 -100825687 + L2 LINE L2 3117 3295 -18 665 299 57 31 chr12 42960825 42961176 -100825279 + L2 LINE L2 2316 2675 -639 629 155 21 0 chr12 42961212 42961309 -100825146 + Tigger7 DNA MER2_type 2489 2587 0 621 281 139 37 chr12 42961310 42961605 -100824850 + L2 LINE L2 2979 3303 -10 191 217 0 22 chr12 42961629 42961675 -100824780 + L2 LINE L2 3262 3306 -7 212 232 0 14 chr12 42961717 42961786 -100824669 + T-rich Low_complexity Low_complexity 5 72 0 919 157 60 0 chr12 42961788 42961954 -100824501 - AluSg/x SINE Alu 0 310 135 2347 85 3 7 chr12 42962214 42962520 -100823935 - AluY SINE Alu -6 305 1 2842 116 25 22 chr12 42962580 42963028 -100823427 - L1MA8 LINE L1 -5 6286 5838 2821 185 48 6 chr12 42963262 42963780 -100822675 - MLT1F LTR MaLR -2 540 1 389 36 0 18 chr12 42963811 42963867 -100822588 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1469 170 82 4 chr12 42963870 42964140 -100822315 - AluJb SINE Alu -21 291 1 563 315 119 19 chr12 42964155 42964517 -100821938 - MLT1L LTR MaLR -25 590 193 2330 97 0 10 chr12 42964647 42964957 -100821498 + AluSq SINE Alu 1 307 -6 207 333 0 13 chr12 42966582 42966657 -100819798 + G-rich Low_complexity Low_complexity 1 74 0 234 132 29 29 chr12 42966833 42966901 -100819554 + GA-rich Low_complexity Low_complexity 1 68 0 2435 93 0 3 chr12 42967566 42967879 -100818576 - AluSx SINE Alu 0 312 1 280 279 49 109 chr12 42968099 42968282 -100818173 + L2 LINE L2 2332 2503 -811 198 175 25 0 chr12 42968471 42968511 -100817944 - L2 LINE L2 -211 3061 3021 1049 254 96 17 chr12 42968774 42969192 -100817263 - Charlie7 DNA MER1_type -66 2546 2096 1019 265 83 8 chr12 42969217 42969590 -100816865 - Charlie7 DNA MER1_type -1952 660 260 401 257 195 0 chr12 42969891 42970004 -100816451 + L2 LINE L2 3138 3272 0 2440 91 0 0 chr12 42970470 42970777 -100815678 + AluSc SINE Alu 1 307 -2 183 129 0 0 chr12 42971060 42971091 -100815364 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 246 206 48 0 chr12 42971238 42971301 -100815154 + GA-rich Low_complexity Low_complexity 4 69 0 508 247 293 10 chr12 42971441 42971833 -100814622 - L1ME4a LINE L1 -16 6105 5603 8126 168 17 181 chr12 42971850 42972272 -100814183 + L1MA4 LINE L1 1 490 -6359 1955 166 7 0 chr12 42972272 42972579 -100813876 + AluJb SINE Alu 1 309 -3 8126 168 17 181 chr12 42972579 42973654 -100812801 + L1MA4 LINE L1 490 782 -6067 204 97 0 0 chr12 42973654 42973685 -100812770 + (CA)n Simple_repeat Simple_repeat 2 32 0 8126 168 17 181 chr12 42973685 42975130 -100811325 + L1MA4 LINE L1 782 2462 -4387 38483 88 9 7 chr12 42975137 42981272 -100805183 + L1PA6 LINE L1 11 6154 0 6558 197 57 9 chr12 42981279 42982163 -100804292 + L1MA4 LINE L1 2449 3288 -3560 2433 89 13 3 chr12 42982163 42982478 -100803977 + L1PA11 LINE L1 5846 6163 -11 6558 197 57 9 chr12 42982478 42983599 -100802856 + L1MA4 LINE L1 3288 4555 -2293 2290 124 29 20 chr12 42983657 42984005 -100802450 - THE1B LTR MaLR -11 353 3 10954 98 8 16 chr12 42984007 42985511 -100800944 - THE1B-int LTR MaLR 0 1580 89 810 71 71 0 chr12 42985535 42985647 -100800808 - THE1B LTR MaLR -244 120 1 1004 244 0 0 chr12 42985659 42985872 -100800583 - AluJb SINE Alu -13 299 87 5443 152 67 1 chr12 42985873 42986370 -100800085 + L1MA4 LINE L1 5551 6014 -988 2186 101 0 0 chr12 42986370 42986647 -100799808 + AluSc SINE Alu 12 288 -21 5443 152 67 1 chr12 42986647 42987514 -100798941 + L1MA4 LINE L1 6014 6996 -6 848 277 48 0 chr12 42987526 42987757 -100798698 + MIR SINE MIR 20 261 -1 351 0 0 0 chr12 42987861 42987900 -100798555 + (CA)n Simple_repeat Simple_repeat 2 40 0 1963 139 14 0 chr12 42988668 42988963 -100797492 + AluSx SINE Alu 5 303 -9 434 267 46 38 chr12 42989952 42990083 -100796372 + MER5A DNA MER1_type 30 161 -28 206 269 0 19 chr12 42990097 42990149 -100796306 + MER5A DNA MER1_type 133 183 -6 227 256 105 0 chr12 42990724 42990810 -100795645 + MIR SINE MIR 120 214 -48 622 267 125 17 chr12 42990919 42991151 -100795304 - MIR SINE MIR 0 262 6 338 203 89 101 chr12 42991789 42992115 -100794340 + L1ME4a LINE L1 5799 6120 -1 2057 100 24 3 chr12 42992198 42992488 -100793967 + AluSq SINE Alu 1 296 -17 208 214 0 0 chr12 42993455 42993497 -100792958 + MIR SINE MIR 1 42 -220 1704 111 0 40 chr12 42993606 42993859 -100792596 + AluSg SINE Alu 1 243 -67 327 330 10 0 chr12 42993998 42994101 -100792354 + MIR SINE MIR 158 261 -1 306 271 161 47 chr12 42994139 42994212 -100792243 - L1ME LINE L1 -303 5818 5755 2433 46 0 3 chr12 42994212 42994521 -100791934 - AluY SINE Alu 0 308 1 306 271 161 47 chr12 42994521 42994745 -100791710 - L1ME LINE L1 -366 5755 5486 8410 167 82 10 chr12 42995683 42996958 -100789497 + L1MB3 LINE L1 14 1433 -4951 2714 113 52 0 chr12 42996958 42997365 -100789090 + MSTA LTR MaLR 1 428 0 8410 167 82 10 chr12 42997365 42997721 -100788734 + L1MB3 LINE L1 1433 1762 -4622 2989 163 56 9 chr12 42997718 42998686 -100787769 + L1MB3 LINE L1 1974 2998 -3384 * 21 0 0 0 chr12 42998686 42998707 -100787748 + AT_rich Low_complexity Low_complexity 1 21 0 41083 61 5 4 chr12 42998707 43004825 -100781630 - L1PA5 LINE L1 -11 6143 22 2075 256 24 24 chr12 43004888 43005038 -100781417 + L1MB3 LINE L1 2958 3107 -3275 2106 112 0 30 chr12 43005038 43005334 -100781121 - AluSg1 SINE Alu -22 287 1 2075 256 24 24 chr12 43005334 43005926 -100780529 + L1MB3 LINE L1 3106 3700 -2682 2034 139 40 4 chr12 43005942 43006289 -100780166 - MER46B DNA MER2_type -8 228 -3 6865 202 26 37 chr12 43006292 43006446 -100780009 + L1MB3 LINE L1 3717 3871 -2511 1870 184 0 0 chr12 43006446 43006756 -100779699 - AluJo SINE Alu -2 310 1 6865 202 26 37 chr12 43006756 43008319 -100778136 + L1MB3 LINE L1 3871 5415 -967 476 157 108 0 chr12 43008326 43008428 -100778027 + L1MB3 LINE L1 6069 6181 -2 4417 176 67 5 chr12 43008444 43009384 -100777071 + L1MB3 LINE L1 5421 6412 -7 420 221 112 92 chr12 43009631 43009880 -100776575 + MIR SINE MIR 5 258 -4 427 122 57 8 chr12 43010346 43010469 -100775986 + (TA)n Simple_repeat Simple_repeat 2 130 0 690 157 34 22 chr12 43010786 43010944 -100775511 + L1M2 LINE L1 5656 5816 -382 561 88 0 11 chr12 43010972 43011063 -100775392 + L1MB7 LINE L1 6086 6175 -9 23 33 0 0 chr12 43011177 43011207 -100775248 + AT_rich Low_complexity Low_complexity 1 30 0 975 92 0 0 chr12 43011235 43011366 -100775089 + AluY SINE Alu 178 308 -3 5494 122 39 23 chr12 43062686 43063357 -100723098 + L1PB2 LINE L1 5100 5759 -392 774 84 0 0 chr12 43063357 43063464 -100722991 + (TA)n Simple_repeat Simple_repeat 2 108 0 5494 122 39 23 chr12 43063464 43063502 -100722953 + L1PB2 LINE L1 5759 5795 -356 2446 82 0 0 chr12 43063502 43063806 -100722649 + AluY SINE Alu 1 304 -7 5494 122 39 23 chr12 43063806 43064135 -100722320 + L1PB2 LINE L1 5795 6150 -1 2876 233 26 24 chr12 43064149 43064979 -100721476 + L1MB8 LINE L1 2386 3217 -4348 205 159 101 0 chr12 43065009 43065078 -100721377 + (TATAA)n Simple_repeat Simple_repeat 5 80 0 3080 192 19 35 chr12 43065081 43065756 -100720699 + L1MB8 LINE L1 3213 3867 -3698 2030 147 3 0 chr12 43065756 43066056 -100720399 + AluSq SINE Alu 1 301 -12 3080 192 19 35 chr12 43066056 43066425 -100720030 + L1MB8 LINE L1 3867 4240 -3325 2147 146 0 0 chr12 43066425 43066733 -100719722 + AluSx SINE Alu 1 308 -4 28 29 0 0 chr12 43066734 43066769 -100719686 + AT_rich Low_complexity Low_complexity 1 35 0 810 137 8 23 chr12 43066926 43067057 -100719398 - FLAM_C SINE Alu -12 131 3 278 290 0 0 chr12 43067309 43067378 -100719077 + MIR SINE MIR 71 139 -69 2113 130 0 7 chr12 43067774 43068075 -100718380 + AluSx SINE Alu 1 299 -13 1728 127 60 88 chr12 43068157 43068371 -100718084 - THE1C LTR MaLR 0 375 175 2439 63 7 3 chr12 43068371 43068674 -100717781 + AluY SINE Alu 1 304 -7 1728 127 60 88 chr12 43068674 43068845 -100717610 - THE1C LTR MaLR -200 175 1 1545 172 40 26 chr12 43069574 43069877 -100716578 - AluJo SINE Alu -5 307 1 6606 182 28 52 chr12 43070123 43070402 -100716053 + L1MB8 LINE L1 5166 5450 -2147 244 214 0 0 chr12 43070402 43070444 -100716011 - Alu SINE Alu -242 60 19 1626 165 0 63 chr12 43070444 43070760 -100715695 + AluJb SINE Alu 5 300 -12 6606 182 28 52 chr12 43070760 43072808 -100713647 + L1MB8 LINE L1 5449 7464 -133 1760 171 3 0 chr12 43072808 43073126 -100713329 + AluJb SINE Alu 1 319 0 6606 182 28 52 chr12 43073126 43073252 -100713203 + L1MB8 LINE L1 7464 7592 -5 1374 196 62 98 chr12 43073445 43073893 -100712562 - MSTB1 LTR MaLR 0 432 1 308 152 61 61 chr12 43073900 43073966 -100712489 + L1ME LINE L1 5494 5559 -562 480 177 74 26 chr12 43074094 43074293 -100712162 - MER20B DNA MER1_type 0 783 543 1183 204 100 0 chr12 43074381 43074488 -100711967 + AluJo SINE Alu 5 100 -212 190 0 67 0 chr12 43074488 43074518 -100711937 + (CAAA)n Simple_repeat Simple_repeat 4 35 0 1183 204 100 0 chr12 43074518 43074689 -100711766 + AluJo SINE Alu 100 311 -1 323 234 43 43 chr12 43074884 43074978 -100711477 + HERV16 LTR ERVL 3222 3315 -2339 208 243 0 54 chr12 43075482 43075556 -100710899 + GA-rich Low_complexity Low_complexity 4 73 0 1495 288 32 12 chr12 43075777 43076417 -100710038 + HERV16 LTR ERVL 3765 4417 -1068 410 278 82 75 chr12 43076755 43077113 -100709342 + HERV16 LTR ERVL 4505 4774 -222 2021 184 49 0 chr12 43077113 43077461 -100708994 - MLT1A1 LTR MaLR 0 365 1 410 278 82 75 chr12 43077461 43077588 -100708867 + HERV16 LTR ERVL 4774 4899 -97 267 237 50 79 chr12 43077681 43077820 -100708635 + LTR16A LTR ERVL 10 144 -306 823 254 38 0 chr12 43077867 43078052 -100708403 + LTR16A LTR ERVL 259 450 0 302 331 105 0 chr12 43078116 43078249 -100708206 - MLT1L LTR MaLR -48 567 421 238 313 12 25 chr12 43078449 43078529 -100707926 - MLT1L LTR MaLR -415 200 122 8919 81 15 109 chr12 43078546 43080074 -100706381 - SVA Other Other -2 1384 1 192 77 0 0 chr12 43080074 43080100 -100706355 + (AGGGGG)n Simple_repeat Simple_repeat 3 28 0 2295 153 21 18 chr12 43080188 43080575 -100705880 - MLT1B LTR MaLR -2 388 1 220 267 336 0 chr12 43080590 43080706 -100705749 + L2 LINE L2 3137 3291 -22 2087 103 0 21 chr12 43080747 43081069 -100705386 + AluSx SINE Alu 1 316 0 390 302 57 38 chr12 43081262 43081527 -100704928 + L1ME4a LINE L1 5313 5582 -2226 584 323 224 18 chr12 43081528 43081980 -100704475 - MLT1K LTR MaLR 0 588 44 373 274 45 96 chr12 43082015 43082225 -100704230 + L1ME4a LINE L1 5579 5798 -323 1506 168 71 39 chr12 43082225 43082505 -100703950 + AluJo SINE Alu 1 289 -13 373 274 45 96 chr12 43082505 43082742 -100703713 + L1ME4a LINE L1 5798 6026 -95 979 23 78 39 chr12 43083291 43083395 -100703060 - MER85 DNA T2_type -6 133 22 2432 51 7 0 chr12 43083395 43083689 -100702766 + AluY SINE Alu 1 296 -15 979 23 78 39 chr12 43083689 43083712 -100702743 - MER85 DNA T2_type -117 22 1 2204 210 60 6 chr12 43084481 43084947 -100701508 - MLT2B2 LTR ERVL -24 491 1 234 257 5 32 chr12 43084949 43085066 -100701389 + T-rich Low_complexity Low_complexity 1 182 0 909 168 7 0 chr12 43085289 43085432 -100701023 - AluJb SINE Alu -32 280 137 832 157 169 28 chr12 43085538 43085716 -100700739 - AluJb SINE Alu -22 290 88 2355 98 3 22 chr12 43085872 43086190 -100700265 - AluSx SINE Alu 0 312 1 21 36 0 0 chr12 43086570 43086598 -100699857 + AT_rich Low_complexity Low_complexity 1 28 0 41 36 0 0 chr12 43086983 43087038 -100699417 + AT_rich Low_complexity Low_complexity 1 55 0 1885 132 10 7 chr12 43088104 43088400 -100698055 - AluSx SINE Alu -15 297 1 260 230 0 40 chr12 43089032 43089106 -100697349 + G-rich Low_complexity Low_complexity 4 74 0 671 209 139 19 chr12 43091804 43092019 -100694436 + L2 LINE L2 2619 2859 -455 331 295 105 24 chr12 43092044 43092254 -100694201 + L2 LINE L2 3043 3269 -44 280 197 13 26 chr12 43092425 43092501 -100693954 - AluJ/FRAM SINE Alu -1 301 227 709 124 10 0 chr12 43092508 43092605 -100693850 - AluJ/FLAM SINE Alu -213 99 2 266 269 128 40 chr12 43092674 43092711 -100693744 + L3 LINE CR1 1190 1222 -355 2353 114 29 14 chr12 43092711 43093061 -100693394 - THE1A LTR MaLR 0 355 1 266 269 128 40 chr12 43093061 43093172 -100693283 + L3 LINE CR1 1222 1351 -226 * 822 318 164 27 chr12 43093156 43093858 -100692597 - L2 LINE L2 -633 2681 1884 461 320 35 25 chr12 43093965 43094162 -100692293 - MIR SINE MIR -4 258 60 397 243 101 7 chr12 43094390 43094538 -100691917 + L1MC4 LINE L1 6459 6620 -1422 1067 189 66 4 chr12 43094555 43094690 -100691765 + L1MC4 LINE L1 6768 6924 -1118 2131 130 0 0 chr12 43094690 43094989 -100691466 + AluSx SINE Alu 1 299 -13 1067 189 66 4 chr12 43094989 43095080 -100691375 + L1MC4 LINE L1 6924 7008 -1034 1125 207 42 137 chr12 43095082 43095512 -100690943 + L1MC4 LINE L1 7241 7629 -413 387 0 0 0 chr12 43095899 43095942 -100690513 + (TG)n Simple_repeat Simple_repeat 2 44 0 195 323 62 21 chr12 43095952 43096048 -100690407 + MIR SINE MIR 35 134 -128 2059 141 7 0 chr12 43096962 43097260 -100689195 - AluSx SINE Alu -12 300 1 471 216 99 63 chr12 43097627 43097849 -100688606 - L1M4 LINE L1 -3780 2366 2137 879 192 17 6 chr12 43097891 43098063 -100688392 - AluJo SINE Alu -30 282 109 290 262 24 119 chr12 43099089 43099303 -100687152 + MIR SINE MIR 4 241 -21 254 282 179 62 chr12 43099506 43099701 -100686754 + MIR SINE MIR 41 258 -4 23 0 0 0 chr12 43099781 43099804 -100686651 + AT_rich Low_complexity Low_complexity 1 23 0 722 243 28 11 chr12 43100324 43100473 -100685982 + MLT1A1 LTR MaLR 184 338 -27 208 28 83 0 chr12 43100473 43100509 -100685946 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 722 243 28 11 chr12 43100509 43100536 -100685919 + MLT1A1 LTR MaLR 338 363 -2 2332 80 0 13 chr12 43101769 43102069 -100684386 + AluY SINE Alu 1 296 -15 2191 109 3 0 chr12 43102077 43102380 -100684075 + AluSq SINE Alu 2 305 -8 927 172 181 18 chr12 43102415 43102636 -100683819 + AluJo SINE Alu 1 257 -55 1046 250 103 23 chr12 43103164 43103512 -100682943 - L1ME1 LINE L1 -21 6539 6164 916 226 42 4 chr12 43103543 43103782 -100682673 - L1ME1 LINE L1 -2453 4087 3840 675 206 102 19 chr12 43103778 43104077 -100682378 - L1 LINE L1 -2887 3259 2935 * 232 133 122 44 chr12 43104061 43104151 -100682304 - L1ME1 LINE L1 -4044 2496 2400 * 1456 128 76 0 chr12 43104186 43104435 -100682020 - Tigger7 DNA MER2_type -1 2486 2219 437 234 71 7 chr12 43104472 43104613 -100681842 - L1ME1 LINE L1 -4179 2361 2212 2060 174 65 3 chr12 43104632 43105017 -100681438 + Tigger1 DNA MER2_type 2 410 -2008 * 10455 125 45 13 chr12 43105015 43106730 -100679725 + Tigger1 DNA MER2_type 649 2418 0 2324 221 82 80 chr12 43106737 43107706 -100678749 - L1ME1 LINE L1 -4360 2180 1207 1059 94 0 0 chr12 43107706 43107886 -100678569 + (TA)n Simple_repeat Simple_repeat 1 180 0 2324 221 82 80 chr12 43107886 43108086 -100678369 - L1ME1 LINE L1 -5333 1207 1009 1492 183 9 31 chr12 43108118 43108435 -100678020 - AluJo SINE Alu -2 310 1 404 335 43 60 chr12 43109118 43109419 -100677036 - L1ME1 LINE L1 -6236 304 9 22 0 0 0 chr12 43109483 43109505 -100676950 + AT_rich Low_complexity Low_complexity 1 22 0 1645 171 11 28 chr12 43110403 43110541 -100675914 + AluJo SINE Alu 1 140 -172 2368 62 3 0 chr12 43110541 43110832 -100675623 + AluSg1 SINE Alu 1 292 -17 1645 171 11 28 chr12 43110832 43110980 -100675475 + AluJo SINE Alu 140 282 -30 208 344 0 16 chr12 43111193 43111257 -100675198 - MIR SINE MIR -190 72 10 21 0 0 0 chr12 43111597 43111618 -100674837 + AT_rich Low_complexity Low_complexity 1 21 0 355 198 73 10 chr12 43111624 43111720 -100674735 - MER3 DNA MER1_type -22 187 86 1899 104 54 14 chr12 43111778 43112075 -100674380 - AluSx SINE Alu -2 310 2 22 0 0 0 chr12 43112188 43112210 -100674245 + AT_rich Low_complexity Low_complexity 1 22 0 2057 118 0 3 chr12 43113078 43113374 -100673081 - AluSx SINE Alu -17 295 1 728 165 25 8 chr12 43113504 43113625 -100672830 - FLAM_A SINE Alu -7 126 4 28 0 0 0 chr12 43113628 43113656 -100672799 + AT_rich Low_complexity Low_complexity 1 28 0 949 294 72 42 chr12 43113935 43114336 -100672119 + L2 LINE L2 2830 3242 -71 260 281 49 37 chr12 43114392 43114474 -100671981 - L3 LINE CR1 -85 1492 1410 640 274 137 64 chr12 43114475 43114899 -100671556 - L3 LINE CR1 -319 1258 804 840 141 0 0 chr12 43115121 43115249 -100671206 + FLAM_C SINE Alu 1 128 -5 203 246 15 0 chr12 43115751 43115816 -100670639 + (CA)n Simple_repeat Simple_repeat 2 67 0 2402 61 0 0 chr12 43116056 43116349 -100670106 - AluY SINE Alu -18 293 1 306 269 114 44 chr12 43117112 43117470 -100668985 - L1MCa LINE L1 -4257 2170 1402 282 262 165 28 chr12 43117476 43117724 -100668731 - L1MCa LINE L1 -4875 1541 1260 349 278 172 18 chr12 43117776 43117945 -100668510 - L1MCa LINE L1 -5364 1052 858 684 285 65 24 chr12 43118201 43118610 -100667845 + L1MC4a LINE L1 5528 6062 -1746 302 298 40 63 chr12 43119418 43119593 -100666862 - MIR SINE MIR -56 206 36 322 290 20 0 chr12 43120545 43120645 -100665810 - L1ME LINE L1 -484 5678 5577 728 148 16 0 chr12 43121447 43121575 -100664880 - AluSg/x SINE Alu -10 302 173 1852 152 0 39 chr12 43122530 43122840 -100663615 + AluJb SINE Alu 1 298 -14 1729 132 46 11 chr12 43125285 43125566 -100660889 + AluJb SINE Alu 1 291 -21 1527 173 6 55 chr12 43125853 43126165 -100660290 + AluJo SINE Alu 4 300 -12 1584 180 43 17 chr12 43126211 43126511 -100659944 + AluJb SINE Alu 1 308 -4 402 194 65 40 chr12 43126880 43127004 -100659451 - MIR SINE MIR -71 191 65 840 212 0 0 chr12 43127191 43127337 -100659118 - FRAM SINE Alu -30 146 1 363 309 6 6 chr12 43128170 43128353 -100658102 + L1ME LINE L1 5249 5431 -731 329 178 206 0 chr12 43128797 43128870 -100657585 + L2 LINE L2 3184 3271 -1 24 67 0 0 chr12 43128914 43128959 -100657496 + AT_rich Low_complexity Low_complexity 1 45 0 365 324 124 37 chr12 43130636 43130670 -100655785 + L2 LINE L2 2009 2039 -1275 303 49 0 0 chr12 43130670 43130711 -100655744 + (TATG)n Simple_repeat Simple_repeat 1 41 0 365 324 124 37 chr12 43130711 43131111 -100655344 + L2 LINE L2 2039 2481 -833 1181 189 58 26 chr12 43131202 43131515 -100654940 - MER33 DNA MER1_type -1 323 1 212 379 97 0 chr12 43131807 43131931 -100654524 + L2 LINE L2 2943 3078 -194 650 157 0 101 chr12 43132502 43132661 -100653794 + FLAM_C SINE Alu 1 143 0 379 242 86 14 chr12 43132665 43132758 -100653697 - MER5C DNA MER1_type -26 298 213 1828 179 0 0 chr12 43132758 43133049 -100653406 + AluJo SINE Alu 1 291 -21 379 242 86 14 chr12 43133049 43133154 -100653301 - MER5C DNA MER1_type -111 213 1 826 127 8 0 chr12 43134745 43134871 -100651584 + FLAM_C SINE Alu 2 128 -5 1617 169 30 10 chr12 43134902 43135198 -100651257 + AluJb SINE Alu 1 302 -10 1478 136 57 8 chr12 43137089 43137353 -100649102 - Tigger7 DNA MER2_type -2 2485 2209 958 194 0 0 chr12 43137362 43137517 -100648938 - Tigger7 DNA MER2_type -549 156 2 1041 267 143 51 chr12 43137766 43138473 -100647982 - L2 LINE L2 0 3313 2534 2492 125 76 15 chr12 43138476 43138945 -100647510 - Tigger2 DNA MER2_type -3 2715 1 698 235 32 16 chr12 43138950 43139137 -100647318 - L2 LINE L2 -779 2535 2346 1463 129 98 43 chr12 43139137 43139463 -100646992 + L1MA9 LINE L1 5963 6306 -6 1268 156 5 9 chr12 43139723 43139935 -100646520 + AluJb SINE Alu 93 303 -9 255 345 23 2 chr12 43140167 43140265 -100646190 - MIR SINE MIR -95 113 16 2133 101 3 52 chr12 43140995 43141321 -100645134 - AluSq SINE Alu -3 310 1 197 343 128 0 chr12 43141540 43141642 -100644813 + MIR SINE MIR 32 146 -62 1872 273 173 63 chr12 43142114 43142213 -100644242 + HAL1 LINE L1 4 91 -2416 2109 103 4 0 chr12 43142213 43142527 -100643928 - AluSq SINE Alu 0 315 1 1872 273 173 63 chr12 43142527 43144278 -100642177 + HAL1 LINE L1 91 2059 -448 2288 112 0 0 chr12 43144293 43144596 -100641859 + AluSx SINE Alu 1 303 -9 544 199 116 39 chr12 43144606 43144787 -100641668 + HAL1 LINE L1 2313 2507 0 483 219 55 52 chr12 43148534 43148764 -100637691 + L1ME2 LINE L1 5924 6157 -9 23 0 0 0 chr12 43149252 43149275 -100637180 + AT_rich Low_complexity Low_complexity 1 23 0 1367 155 78 14 chr12 43149451 43149747 -100636708 + L1MA7 LINE L1 5782 6096 -195 2191 149 46 14 chr12 43149747 43150184 -100636271 + Tigger2 DNA MER2_type 1 451 -2267 667 147 0 0 chr12 43150184 43150293 -100636162 + AluJb SINE Alu 204 312 0 1562 155 41 4 chr12 43150318 43150589 -100635866 + Tigger2 DNA MER2_type 477 757 -1961 917 151 164 9 chr12 43150645 43150864 -100635591 + Tigger2 DNA MER2_type 2464 2716 -2 810 169 38 16 chr12 43150864 43151048 -100635407 + L1MA8 LINE L1 6101 6288 -3 21 0 0 0 chr12 43151183 43151204 -100635251 + AT_rich Low_complexity Low_complexity 1 21 0 2042 123 0 39 chr12 43151277 43151586 -100634869 + AluJb SINE Alu 1 297 -15 30 27 0 0 chr12 43151837 43151874 -100634581 + AT_rich Low_complexity Low_complexity 1 37 0 2161 86 21 7 chr12 43155174 43155464 -100630991 - AluSq SINE Alu -19 294 1 2171 99 27 0 chr12 43156594 43156886 -100629569 + AluSg SINE Alu 1 300 -10 1070 138 6 0 chr12 43156886 43157046 -100629409 + AluSg/x SINE Alu 132 292 -18 29 0 0 0 chr12 43157046 43157075 -100629380 + AT_rich Low_complexity Low_complexity 1 29 0 2427 73 3 0 chr12 43159453 43159754 -100626701 + AluSq SINE Alu 1 302 -11 2049 119 34 0 chr12 43162006 43162300 -100624155 - AluSx SINE Alu -8 304 1 2224 73 18 0 chr12 43162373 43162659 -100623796 - AluY SINE Alu -20 291 1 1712 181 0 3 chr12 43162937 43163224 -100623231 + AluJo SINE Alu 7 292 -20 244 250 59 0 chr12 43163390 43163458 -100622997 - L1MC/D LINE L1 -2048 5760 5689 2179 119 0 3 chr12 43163482 43163776 -100622679 - AluJb SINE Alu -7 305 13 396 298 181 12 chr12 43163925 43164096 -100622359 - MIR SINE MIR -16 246 47 1744 174 10 0 chr12 43164255 43164553 -100621902 - AluJo SINE Alu -11 301 1 2306 87 3 10 chr12 43165343 43165641 -100620814 + AluSp SINE Alu 1 296 -17 292 214 11 67 chr12 43165729 43165818 -100620637 + L1ME3A LINE L1 5520 5603 -518 507 177 122 61 chr12 43166760 43166907 -100619548 + MER5B DNA MER1_type 9 164 -14 1761 169 28 0 chr12 43166990 43167274 -100619181 - AluJb SINE Alu -20 292 1 325 296 61 0 chr12 43167749 43167864 -100618591 - MIR SINE MIR -20 242 121 21 0 0 0 chr12 43168058 43168079 -100618376 + AT_rich Low_complexity Low_complexity 1 21 0 535 234 227 29 chr12 43168446 43168724 -100617731 + L1ME3A LINE L1 5628 5960 -202 321 242 99 39 chr12 43168791 43168926 -100617529 + L1ME3A LINE L1 5963 6113 -57 828 165 0 0 chr12 43168926 43169059 -100617396 + FLAM_A SINE Alu 1 133 0 321 242 99 39 chr12 43169059 43169105 -100617350 + L1ME3A LINE L1 6113 6155 -15 839 117 8 8 chr12 43169394 43169514 -100616941 + FLAM_C SINE Alu 1 120 -23 1649 211 3 3 chr12 43170157 43170460 -100615995 - AluJb SINE Alu -9 303 1 1837 163 0 31 chr12 43170525 43170844 -100615611 + AluSx SINE Alu 1 309 -3 441 260 121 13 chr12 43171533 43171706 -100614749 + MIR SINE MIR 32 228 -34 507 216 109 69 chr12 43171712 43172041 -100614414 + L1MC4a LINE L1 5696 6034 -87 241 281 31 0 chr12 43173109 43173173 -100613282 - MIR SINE MIR -1 261 196 2090 113 0 3 chr12 43173323 43173616 -100612839 + AluSg SINE Alu 1 292 -18 943 215 70 19 chr12 43173711 43173925 -100612530 - AluJo SINE Alu -87 225 1 21 82 0 0 chr12 43174281 43174330 -100612125 + AT_rich Low_complexity Low_complexity 1 49 0 3091 234 36 27 chr12 43174498 43175335 -100611120 - L1ME1 LINE L1 -3 6163 5311 1747 184 3 13 chr12 43175335 43175645 -100610810 - AluJb SINE Alu -5 307 1 3091 234 36 27 chr12 43175645 43175770 -100610685 - L1ME1 LINE L1 -855 5311 5189 1404 228 81 39 chr12 43175853 43176307 -100610148 - L1ME1 LINE L1 -46 6120 5687 2200 108 3 3 chr12 43176307 43176602 -100609853 - AluSx SINE Alu -17 295 1 1404 228 81 39 chr12 43176602 43176638 -100609817 - L1ME1 LINE L1 -479 5687 5654 2417 81 0 3 chr12 43176638 43176948 -100609507 - AluY SINE Alu -2 309 1 1404 228 81 39 chr12 43176948 43176972 -100609483 - L1ME1 LINE L1 -512 5654 5588 1180 76 0 0 chr12 43176975 43177119 -100609336 + AluSp/q SINE Alu 156 299 -14 996 228 84 21 chr12 43177135 43177559 -100608896 - L1ME1 LINE L1 -613 5553 5103 670 214 0 0 chr12 43177682 43177813 -100608642 + FLAM_C SINE Alu 2 132 -1 5370 255 97 21 chr12 43178030 43180107 -100606348 + L1M4b LINE L1 10 2230 -4729 2410 72 3 0 chr12 43180107 43180411 -100606044 + AluY SINE Alu 1 305 -6 5370 255 97 21 chr12 43180411 43180483 -100605972 + L1M4b LINE L1 2230 2295 -4664 296 229 0 29 chr12 43180483 43180553 -100605902 - LTR28 LTR ERV1 0 1020 953 2499 179 44 8 chr12 43180641 43181120 -100605335 - LTR27 LTR ERV1 -134 502 7 1504 108 5 0 chr12 43181295 43181508 -100604947 + AluSg/x SINE Alu 86 299 -13 1543 205 0 27 chr12 43181517 43181810 -100604645 + AluJo SINE Alu 1 285 -27 4426 240 42 44 chr12 43182053 43182444 -100604011 + L1M4b LINE L1 2610 3001 -3956 671 200 8 8 chr12 43182444 43182564 -100603891 + FLAM_A SINE Alu 2 121 -12 4426 240 42 44 chr12 43182564 43183997 -100602458 + L1M4b LINE L1 3001 4419 -2538 27 0 0 0 chr12 43184267 43184294 -100602161 + AT_rich Low_complexity Low_complexity 1 27 0 202 214 24 0 chr12 43184642 43184684 -100601771 + (TG)n Simple_repeat Simple_repeat 2 44 0 1121 206 28 5 chr12 43185023 43185237 -100601218 + MER20 DNA MER1_type 1 219 0 898 171 74 6 chr12 43186241 43186417 -100600038 + MER5A DNA MER1_type 1 188 -1 828 125 0 0 chr12 43186802 43186914 -100599541 + AluJo/FLAM SINE Alu 1 112 -200 2000 132 7 29 chr12 43186916 43187226 -100599229 - AluSx SINE Alu -9 303 1 25 31 0 0 chr12 43187234 43187266 -100599189 + AT_rich Low_complexity Low_complexity 1 32 0 71 13 0 0 chr12 43187914 43187992 -100598463 + AT_rich Low_complexity Low_complexity 1 78 0 2109 99 14 3 chr12 43188058 43188352 -100598103 + AluSq SINE Alu 1 297 -16 39 0 0 0 chr12 43188794 43188833 -100597622 + AT_rich Low_complexity Low_complexity 1 39 0 400 238 54 27 chr12 43188924 43189071 -100597384 - L1ME4a LINE L1 -3 6118 5968 21 0 0 0 chr12 43189071 43189092 -100597363 + AT_rich Low_complexity Low_complexity 1 21 0 546 283 31 0 chr12 43189297 43189456 -100596999 - L1ME4a LINE L1 -435 5686 5523 30 45 0 0 chr12 43189862 43189906 -100596549 + AT_rich Low_complexity Low_complexity 1 44 0 519 322 74 25 chr12 43190000 43190242 -100596213 + MIR SINE MIR 5 258 -4 328 250 170 9 chr12 43190262 43190374 -100596081 - L2 LINE L2 0 3313 3184 2148 101 0 3 chr12 43190745 43191054 -100595401 - AluSq SINE Alu 0 308 1 941 231 3 88 chr12 43191216 43191511 -100594944 - MLT1E LTR MaLR -2 591 322 327 179 228 16 chr12 43191890 43192013 -100594442 - MER103 DNA DNA -15 151 3 2116 118 0 0 chr12 43192484 43192773 -100593682 + AluSx SINE Alu 1 289 -23 229 371 0 29 chr12 43192800 43192905 -100593550 - MIR SINE MIR -160 102 1 1891 123 0 79 chr12 43192961 43193279 -100593176 + AluSx SINE Alu 1 293 -19 1719 154 67 13 chr12 43193610 43193909 -100592546 - MER1B DNA MER1_type 0 339 25 464 130 7 20 chr12 43193901 43193993 -100592462 + MSTB2 LTR MaLR 266 445 -12 * 1385 217 20 17 chr12 43194122 43194300 -100592155 - AluJo SINE Alu -12 300 119 183 114 0 0 chr12 43194300 43194335 -100592120 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1385 217 20 17 chr12 43194335 43194455 -100592000 - AluJo SINE Alu -193 119 1 1204 133 82 10 chr12 43194617 43194812 -100591643 + AluJb SINE Alu 88 296 -16 21 0 0 0 chr12 43194937 43194958 -100591497 + AT_rich Low_complexity Low_complexity 1 21 0 233 298 36 12 chr12 43195027 43195111 -100591344 - MIR SINE MIR -108 154 69 447 309 73 24 chr12 43195302 43195467 -100590988 + MIR SINE MIR 1 173 -89 1057 139 92 101 chr12 43195705 43195943 -100590512 + MER46A DNA MER2_type 1 236 0 268 178 0 0 chr12 43196029 43196074 -100590381 + Charlie3 DNA MER1_type 1 45 -2665 * 415 156 0 0 chr12 43196065 43196129 -100590326 + Charlie3 DNA MER1_type 2643 2706 -4 22 0 0 0 chr12 43196257 43196279 -100590176 + AT_rich Low_complexity Low_complexity 1 22 0 3887 153 42 34 chr12 43196633 43197344 -100589111 + L1MA8 LINE L1 5492 6211 -80 1837 140 3 53 chr12 43197344 43197666 -100588789 - AluJb SINE Alu -4 308 3 3887 153 42 34 chr12 43197666 43197744 -100588711 + L1MA8 LINE L1 6211 6287 -4 609 169 39 0 chr12 43198106 43198236 -100588219 - L1MA8 LINE L1 0 6291 6157 337 344 142 4 chr12 43198427 43198587 -100587868 - MIR SINE MIR -79 183 6 234 324 287 0 chr12 43199214 43199322 -100587133 + MIR SINE MIR 11 149 -113 658 283 91 31 chr12 43199515 43199967 -100586488 - L1M4 LINE L1 -3319 2827 2349 694 206 14 0 chr12 43199969 43200110 -100586345 + FLAM_C SINE Alu 1 143 0 283 296 187 12 chr12 43200515 43201041 -100585414 - L1MEc LINE L1 -1528 4687 4020 1684 149 21 10 chr12 43201050 43201339 -100585116 - L1M3 LINE L1 -407 5776 5485 270 0 0 0 chr12 43201339 43201369 -100585086 + (TG)n Simple_repeat Simple_repeat 1 30 0 482 250 98 0 chr12 43201423 43201607 -100584848 - L1MEc LINE L1 -2206 4009 3808 188 35 35 0 chr12 43201719 43201748 -100584707 + (ATTG)n Simple_repeat Simple_repeat 4 33 0 819 171 0 14 chr12 43201748 43201894 -100584561 - AluJb SINE Alu -32 280 137 1138 276 96 43 chr12 43202043 43203013 -100583442 - L1MEc LINE L1 -2826 3389 2369 486 309 73 20 chr12 43203028 43203151 -100583304 - L1MEc LINE L1 -4049 2347 2232 2105 113 7 3 chr12 43203151 43203443 -100583012 + AluSq SINE Alu 1 293 -20 486 309 73 20 chr12 43203443 43203565 -100582890 - L1MEc LINE L1 -4164 2232 2089 201 74 0 0 chr12 43203678 43203705 -100582750 + (TG)n Simple_repeat Simple_repeat 2 28 0 275 254 35 29 chr12 43203707 43203880 -100582575 + (TA)n Simple_repeat Simple_repeat 1 174 0 1760 142 51 0 chr12 43204189 43204485 -100581970 - MER44D DNA MER2_type -4 601 419 245 207 49 61 chr12 43204902 43204984 -100581471 - MARNA DNA Mariner -324 262 182 25 65 0 0 chr12 43205234 43205280 -100581175 + AT_rich Low_complexity Low_complexity 1 46 0 324 323 13 25 chr12 43205528 43205557 -100580898 + CT-rich Low_complexity Low_complexity 3 31 -127 2449 45 0 16 chr12 43205557 43205870 -100580585 - AluY SINE Alu -3 308 1 324 323 13 25 chr12 43205870 43205998 -100580457 + CT-rich Low_complexity Low_complexity 31 158 0 26 50 0 0 chr12 43206305 43206345 -100580110 + AT_rich Low_complexity Low_complexity 1 40 0 227 291 175 10 chr12 43206367 43206573 -100579882 - L1ME LINE L1 -206 5915 5676 1810 152 22 0 chr12 43206637 43206942 -100579513 - AluSx SINE Alu 0 311 1 299 330 27 21 chr12 43206946 43207134 -100579321 - L1ME LINE L1 -456 5665 5477 21 89 0 0 chr12 43207215 43207271 -100579184 + AT_rich Low_complexity Low_complexity 1 56 0 2135 126 3 0 chr12 43207359 43207668 -100578787 - AluSx SINE Alu -2 310 1 327 311 109 23 chr12 43207668 43207925 -100578530 - L1ME LINE L1 -983 5163 4885 26 50 0 0 chr12 43207985 43208025 -100578430 + AT_rich Low_complexity Low_complexity 1 40 0 325 255 199 63 chr12 43208176 43208462 -100577993 - L1MC4a LINE L1 -1871 5937 5613 23 78 0 0 chr12 43209041 43209092 -100577363 + AT_rich Low_complexity Low_complexity 1 51 0 28 109 0 0 chr12 43209132 43209251 -100577204 + AT_rich Low_complexity Low_complexity 1 119 0 586 276 8 15 chr12 43209257 43209391 -100577064 + L2 LINE L2 3136 3268 -4 638 246 138 9 chr12 43209411 43209643 -100576812 - Charlie7 DNA MER1_type -316 2296 2035 1555 214 3 3 chr12 43209978 43210282 -100576173 - AluJb SINE Alu -6 306 3 23 33 0 0 chr12 43210326 43210356 -100576099 + AT_rich Low_complexity Low_complexity 1 30 0 3464 221 89 52 chr12 43210482 43211180 -100575275 + L1MC4 LINE L1 6446 7203 -839 2269 88 0 0 chr12 43211180 43211476 -100574979 + AluY SINE Alu 16 311 0 3464 221 89 52 chr12 43211476 43211883 -100574572 + L1MC4 LINE L1 7203 7593 -449 275 194 57 65 chr12 43211958 43212082 -100574373 + L1MC4 LINE L1 7919 8041 -1 1783 144 7 7 chr12 43212221 43212498 -100573957 - AluJb SINE Alu -32 280 4 2941 243 119 69 chr12 43212502 43214187 -100572268 - Charlie7 DNA MER1_type -707 1905 136 318 87 0 0 chr12 43214606 43214652 -100571803 + (TG)n Simple_repeat Simple_repeat 2 47 0 441 294 62 19 chr12 43215032 43215243 -100571212 - L1ME3 LINE L1 -215 5947 5728 1589 138 66 29 chr12 43215748 43216095 -100570360 - L1MA9 LINE L1 -1 6311 5952 248 251 120 74 chr12 43216100 43216466 -100569989 - HAL1b LINE L1 -689 659 277 21 0 0 0 chr12 43218695 43218716 -100567739 + AT_rich Low_complexity Low_complexity 1 21 0 417 70 0 0 chr12 43218856 43218913 -100567542 + (TG)n Simple_repeat Simple_repeat 2 58 0 1766 153 3 14 chr12 43218913 43219195 -100567260 - AluSx SINE Alu -29 283 5 22 0 0 0 chr12 43219998 43220020 -100566435 + AT_rich Low_complexity Low_complexity 1 22 0 284 312 32 32 chr12 43220644 43220801 -100565654 + L1MC/D LINE L1 5724 5880 -1928 2441 64 0 0 chr12 43221062 43221360 -100565095 + AluY SINE Alu 1 298 -13 216 320 48 39 chr12 43221741 43221844 -100564611 - MIR3 SINE MIR -40 168 65 200 125 0 25 chr12 43222388 43222428 -100564027 + (TTA)n Simple_repeat Simple_repeat 2 40 0 461 305 84 28 chr12 43222744 43222957 -100563498 + L3 LINE CR1 1345 1569 -8 2123 98 14 11 chr12 43224505 43224790 -100561665 + AluSx SINE Alu 4 289 -23 207 0 0 0 chr12 43225734 43225757 -100560698 + (TG)n Simple_repeat Simple_repeat 2 24 0 1486 207 7 0 chr12 43225815 43226095 -100560360 - AluJo SINE Alu -30 282 1 2315 204 129 9 chr12 43226359 43227165 -100559290 + L1ME1 LINE L1 5056 6160 -6 1452 180 24 7 chr12 43227212 43227501 -100558954 + AluJo SINE Alu 3 296 -16 264 40 60 0 chr12 43227668 43227718 -100558737 + (TA)n Simple_repeat Simple_repeat 1 53 0 2029 142 0 16 chr12 43229861 43230178 -100556277 - AluSx SINE Alu 0 312 1 1589 133 3 117 chr12 43232354 43232678 -100553777 + AluJo SINE Alu 1 287 -15 25 0 0 0 chr12 43232692 43232717 -100553738 + AT_rich Low_complexity Low_complexity 1 25 0 7482 191 51 16 chr12 43232827 43234588 -100551867 + L1MA4 LINE L1 2345 4166 -1980 3112 155 40 11 chr12 43234609 43234990 -100551465 + L1MA4 LINE L1 5343 5712 -588 282 56 0 0 chr12 43234990 43235026 -100551429 + (TA)n Simple_repeat Simple_repeat 1 36 0 3112 155 40 11 chr12 43235026 43235521 -100550934 + L1MA4 LINE L1 5712 6293 -7 1462 203 0 4 chr12 43235749 43236015 -100550440 + AluJo SINE Alu 35 299 -13 25 0 0 0 chr12 43236220 43236245 -100550210 + AT_rich Low_complexity Low_complexity 1 25 0 1423 198 31 20 chr12 43236557 43236850 -100549605 - AluJo SINE Alu -3 299 4 319 268 186 15 chr12 43236855 43237194 -100549261 - L1ME4a LINE L1 -12 6109 5713 867 320 110 30 chr12 43237554 43237992 -100548463 - L2 LINE L2 0 3313 2841 1566 241 125 30 chr12 43238197 43239382 -100547073 - L1ME3 LINE L1 -46 6099 4773 228 300 0 0 chr12 43239872 43239952 -100546503 + T-rich Low_complexity Low_complexity 1 80 0 336 257 121 7 chr12 43239965 43240105 -100546350 - L1ME3 LINE L1 -5056 1063 908 209 182 26 39 chr12 43240184 43240261 -100546194 + (TAAA)n Simple_repeat Simple_repeat 3 78 0 248 344 165 40 chr12 43240311 43240759 -100545696 - L1ME3 LINE L1 -5384 735 232 1833 117 52 28 chr12 43240902 43241192 -100545263 + AluSx SINE Alu 1 297 -15 352 273 101 0 chr12 43241372 43241511 -100544944 - L1MEc LINE L1 -3115 3267 3115 1833 134 92 0 chr12 43241517 43241845 -100544610 - L1MA3 LINE L1 0 6305 5948 656 256 12 0 chr12 43241846 43242014 -100544441 - L1MEc LINE L1 -3566 2816 2647 302 259 85 66 chr12 43242036 43242248 -100544207 - L1MEc LINE L1 -3952 2611 2396 547 302 133 3 chr12 43242250 43242604 -100543851 - L1MEc LINE L1 -4693 1691 1292 1061 173 0 0 chr12 43242606 43242774 -100543681 - FRAM SINE Alu -7 169 2 303 249 35 19 chr12 43242776 43242804 -100543651 - L1MEc LINE L1 -5097 1411 1385 1003 187 131 59 chr12 43242804 43243125 -100543330 - MER2 DNA MER2_type 0 344 1 303 249 35 19 chr12 43243125 43243256 -100543199 - L1MEc LINE L1 -5123 1385 1180 233 176 98 0 chr12 43243291 43243342 -100543113 + Tigger5 DNA MER2_type 1 56 -2267 521 129 94 0 chr12 43243346 43243431 -100543024 + Tigger5 DNA MER2_type 2231 2323 0 879 305 123 29 chr12 43243431 43244342 -100542113 - L1MEc LINE L1 -5344 1219 223 263 260 24 87 chr12 43244505 43244585 -100541870 - L1MEd LINE L1 -4701 1683 1612 2035 116 10 33 chr12 43244585 43244886 -100541569 + AluSx SINE Alu 1 294 -18 263 260 24 87 chr12 43244886 43244932 -100541523 - L1MEd LINE L1 -4772 1612 1565 673 292 61 18 chr12 43244935 43245454 -100541001 - L1MEd LINE L1 -4862 1510 1023 299 281 66 25 chr12 43245543 43245664 -100540791 - Charlie4 DNA MER1_type -15 1946 1821 463 179 17 144 chr12 43245667 43245754 -100540701 - Charlie4 DNA MER1_type -336 172 116 2329 91 0 7 chr12 43245754 43246063 -100540392 + AluSc SINE Alu 1 307 -2 463 179 17 144 chr12 43246063 43246148 -100540307 - Charlie4 DNA MER1_type -392 116 22 22 35 0 0 chr12 43246329 43246358 -100540097 + AT_rich Low_complexity Low_complexity 1 29 0 1699 168 0 20 chr12 43246358 43246650 -100539805 - AluJo SINE Alu -26 286 1 25 0 0 0 chr12 43247373 43247398 -100539057 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr12 43248064 43248097 -100538358 + AT_rich Low_complexity Low_complexity 1 33 0 315 314 16 103 chr12 43248552 43248621 -100537834 - MER5A DNA MER1_type 0 189 116 1814 157 18 7 chr12 43248621 43248907 -100537548 + AluJb SINE Alu 2 290 -22 183 114 0 0 chr12 43248907 43248942 -100537513 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 315 314 16 103 chr12 43248942 43248998 -100537457 - MER5A DNA MER1_type -72 117 83 2266 77 23 20 chr12 43248998 43249298 -100537157 - AluY SINE Alu -10 301 1 315 314 16 103 chr12 43249298 43249364 -100537091 - MER5A DNA MER1_type -106 83 13 1590 179 117 152 chr12 43251673 43252110 -100534345 - Charlie2a DNA MER1_type -6 2856 2405 1307 168 113 29 chr12 43252110 43252384 -100534071 + AluJo SINE Alu 1 297 -15 1590 179 117 152 chr12 43252384 43252611 -100533844 - Charlie2a DNA MER1_type -457 2405 2172 2357 92 0 0 chr12 43252611 43252904 -100533551 + AluSc SINE Alu 1 293 -16 1590 179 117 152 chr12 43252904 43253391 -100533064 - Charlie2a DNA MER1_type -690 2172 1744 457 198 158 0 chr12 43253399 43253500 -100532955 - MER5A DNA MER1_type 0 189 73 1256 142 46 14 chr12 43253502 43253721 -100532734 - AluJb SINE Alu -4 308 83 339 247 14 0 chr12 43253723 43253796 -100532659 - MER5A DNA MER1_type -114 75 2 880 208 68 30 chr12 43253796 43254061 -100532394 - Charlie2a DNA MER1_type -1118 1744 1470 1147 233 118 37 chr12 43254100 43254155 -100532300 - Charlie2b DNA MER1_type -2110 672 623 1552 181 64 17 chr12 43254155 43254453 -100532002 - AluJo SINE Alu 0 312 1 1147 233 118 37 chr12 43254453 43254745 -100531710 - Charlie2b DNA MER1_type -2159 623 297 541 251 218 14 chr12 43254774 43254985 -100531470 - MIR SINE MIR 0 262 9 475 247 211 0 chr12 43255007 43255197 -100531258 - Charlie2b DNA MER1_type -2542 240 11 298 232 110 0 chr12 43255611 43255693 -100530762 + MIR SINE MIR 60 150 -112 389 248 233 8 chr12 43256578 43256707 -100529748 + MIR SINE MIR 79 236 -26 224 272 37 25 chr12 43256761 43256842 -100529613 + MIR SINE MIR 175 256 -6 3496 123 10 8 chr12 43264038 43264543 -100521912 + MER1A DNA MER1_type 24 529 0 486 232 148 7 chr12 43264980 43265135 -100521320 - MIR SINE MIR -70 192 16 188 256 0 23 chr12 43265615 43265658 -100520797 + L2 LINE L2 3210 3251 -21 1587 167 0 69 chr12 43265847 43266165 -100520290 - AluJo SINE Alu -16 296 1 2249 109 20 0 chr12 43266197 43266501 -100519954 - AluSg SINE Alu 0 310 1 21 0 0 0 chr12 43266948 43266969 -100519486 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr12 43267876 43267905 -100518550 + (TC)n Simple_repeat Simple_repeat 2 30 0 1958 152 0 0 chr12 43267905 43268194 -100518261 - AluJb SINE Alu -23 289 1 862 130 0 0 chr12 43268379 43268494 -100517961 + FRAM SINE Alu 31 145 -31 186 43 0 0 chr12 43268495 43268518 -100517937 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 509 289 114 5 chr12 43268735 43268936 -100517519 - MIR SINE MIR -12 250 28 1921 152 42 6 chr12 43269265 43269601 -100516854 + MER7A DNA MER2_type 1 346 0 2218 90 10 0 chr12 43269876 43270166 -100516289 - AluSx SINE Alu -19 293 1 621 261 5 48 chr12 43270185 43270373 -100516082 + AluJo SINE Alu 118 297 -15 28 29 0 0 chr12 43270662 43270697 -100515758 + AT_rich Low_complexity Low_complexity 1 35 0 36 62 0 0 chr12 43270729 43270793 -100515662 + AT_rich Low_complexity Low_complexity 1 64 0 1862 144 44 3 chr12 43271709 43272007 -100514448 - AluSx SINE Alu -2 310 1 317 243 157 49 chr12 43272251 43272436 -100514019 - MER112 DNA MER1_type -15 245 41 744 183 0 8 chr12 43272702 43272833 -100513622 + FLAM_A SINE Alu 7 136 -6 206 361 172 16 chr12 43273293 43273415 -100513040 - L2 LINE L2 -245 3027 2887 908 169 0 36 chr12 43273574 43273740 -100512715 + FRAM SINE Alu 1 160 -16 1683 171 0 32 chr12 43273969 43274279 -100512176 - AluJb SINE Alu 0 312 13 1038 186 98 104 chr12 43274374 43274933 -100511522 - L1MC5 LINE L1 -234 7727 7172 570 221 23 0 chr12 43274945 43275076 -100511379 - L1MC5 LINE L1 -855 7106 6973 289 221 5 168 chr12 43275110 43275300 -100511155 - L1MC5 LINE L1 -1000 6961 6803 306 379 14 0 chr12 43275303 43275448 -100511007 - L1MC4a LINE L1 -1218 6590 6444 22 94 0 0 chr12 43276037 43276101 -100510354 + AT_rich Low_complexity Low_complexity 1 64 0 373 275 130 34 chr12 43276478 43276740 -100509715 - L1MC4a LINE L1 -2025 5783 5497 1014 180 111 0 chr12 43276820 43277037 -100509418 - L1MC1 LINE L1 0 6333 6093 342 0 0 0 chr12 43277063 43277101 -100509354 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2043 132 0 0 chr12 43277103 43277383 -100509072 - AluSg SINE Alu -30 280 1 918 203 6 6 chr12 43277395 43277558 -100508897 - AluJb SINE Alu -20 292 130 186 71 0 0 chr12 43278366 43278394 -100508061 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2277 76 0 10 chr12 43278469 43278770 -100507685 - AluY SINE Alu -13 298 1 5047 177 26 14 chr12 43278780 43279786 -100506669 - L1MC2 LINE L1 -24 7115 6098 3307 226 58 25 chr12 43279781 43280898 -100505557 - L1MC2 LINE L1 -2179 4762 3609 * 1725 105 14 16 chr12 43280899 43281194 -100505261 - THE1C LTR MaLR -2 373 1 2138 214 96 11 chr12 43281200 43282057 -100504398 - L1MC2 LINE L1 -3334 3607 2675 13883 133 38 19 chr12 43282057 43282522 -100503933 - Tigger1 DNA MER2_type 0 2418 1963 2014 167 3 0 chr12 43282522 43282828 -100503627 + 7SLRNA srpRNA srpRNA 8 314 -6 13883 133 38 19 chr12 43282828 43283324 -100503131 - Tigger1 DNA MER2_type -455 1963 1478 1532 208 7 0 chr12 43283324 43283618 -100502837 + AluJo SINE Alu 1 296 -16 13883 133 38 19 chr12 43283618 43284751 -100501704 - Tigger1 DNA MER2_type -940 1478 368 2351 96 3 3 chr12 43284751 43285064 -100501391 + AluSp SINE Alu 1 313 0 13883 133 38 19 chr12 43285064 43285289 -100501166 - Tigger1 DNA MER2_type -2050 368 49 2292 89 0 10 chr12 43285289 43285592 -100500863 + AluY SINE Alu 1 300 -11 13883 133 38 19 chr12 43285592 43285642 -100500813 - Tigger1 DNA MER2_type -2369 49 1 3777 98 4 2 chr12 43285653 43286154 -100500301 + MER1A DNA MER1_type 28 529 0 3449 220 60 45 chr12 43286178 43288220 -100498235 - L1MC2 LINE L1 -4466 2656 11 180 77 0 0 chr12 43288997 43289023 -100497432 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 586 276 47 24 chr12 43289025 43289195 -100497260 + MIR SINE MIR 85 258 -4 193 152 0 152 chr12 43291328 43291394 -100495061 + L2 LINE L2 3257 3312 -1 486 284 142 14 chr12 43292142 43292360 -100494095 + MIR SINE MIR 3 248 -14 1962 144 4 0 chr12 43292598 43292900 -100493555 + AluSx SINE Alu 3 305 0 180 0 0 0 chr12 43293936 43293956 -100492499 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2551 111 16 0 chr12 43294060 43294429 -100492026 - THE1C LTR MaLR 0 375 1 7018 113 32 36 chr12 43294429 43295531 -100490924 - THE1C-int LTR MaLR 0 1580 484 23 0 0 0 chr12 43295727 43295750 -100490705 + AT_rich Low_complexity Low_complexity 1 23 0 194 298 61 53 chr12 43295858 43295989 -100490466 - L2 LINE L2 -1579 1735 1604 1565 166 14 8 chr12 43296024 43296324 -100490131 - MER61B LTR ERV1 -28 396 1 2084 57 0 0 chr12 43296444 43296691 -100489764 + AluY SINE Alu 50 296 -15 456 248 85 8 chr12 43297258 43297387 -100489068 + MER91B DNA MER1_type 26 164 -26 1864 133 29 7 chr12 43297387 43297666 -100488789 + AluSx SINE Alu 1 285 -27 254 280 56 28 chr12 43297759 43297902 -100488553 + L1ME4a LINE L1 5950 6096 -25 2194 101 0 13 chr12 43298135 43298433 -100488022 + AluSg SINE Alu 1 294 -16 28 48 0 0 chr12 43299179 43299221 -100487234 + AT_rich Low_complexity Low_complexity 1 42 0 2367 81 3 0 chr12 43299366 43299662 -100486793 + AluSg SINE Alu 1 297 -13 520 258 126 0 chr12 43300655 43300814 -100485641 + MIR3 SINE MIR 25 203 -5 214 171 0 0 chr12 43300961 43300996 -100485459 + (CATATA)n Simple_repeat Simple_repeat 4 38 0 189 0 0 0 chr12 43301869 43301890 -100484565 + (TC)n Simple_repeat Simple_repeat 2 22 0 21 57 0 0 chr12 43302240 43302275 -100484180 + AT_rich Low_complexity Low_complexity 1 35 0 314 342 34 105 chr12 43303264 43303729 -100482726 + L2 LINE L2 2804 3235 -37 374 319 161 32 chr12 43303732 43303980 -100482475 + L2 LINE L2 2983 3262 -10 2238 98 0 0 chr12 43304028 43304314 -100482141 - AluSg SINE Alu -24 286 1 1112 195 32 0 chr12 43304317 43304568 -100481887 + L1MB3 LINE L1 4377 4635 -1511 2148 133 74 0 chr12 43304835 43305174 -100481281 + THE1B LTR MaLR 1 364 0 2109 233 98 11 chr12 43305383 43306006 -100480449 + L1MB3 LINE L1 4601 5277 -869 1057 190 54 23 chr12 43306011 43306269 -100480186 + L1MB3 LINE L1 5561 5826 -357 273 96 39 19 chr12 43306270 43306322 -100480133 - L1ME1 LINE L1 -18 6148 6096 664 176 0 8 chr12 43306327 43306446 -100480009 - AluJ SINE Alu -13 299 182 839 156 0 0 chr12 43306446 43306574 -100479881 - AluJ SINE Alu -179 133 6 2096 146 11 8 chr12 43306574 43306950 -100479505 + L1MB3 LINE L1 5807 6183 0 856 151 27 43 chr12 43306977 43307115 -100479340 + L1MB8 LINE L1 5996 6132 -46 2129 113 10 3 chr12 43307115 43307406 -100479049 + AluSx SINE Alu 1 293 -19 856 151 27 43 chr12 43307406 43307453 -100479002 + L1MB8 LINE L1 6132 6178 0 2447 92 0 0 chr12 43307473 43307779 -100478676 + AluSc SINE Alu 1 306 -3 2330 63 0 7 chr12 43307804 43308091 -100478364 + AluY SINE Alu 1 285 -26 210 128 0 0 chr12 43308091 43308130 -100478325 + (TA)n Simple_repeat Simple_repeat 2 40 0 320 169 13 52 chr12 43308142 43308219 -100478236 + L1MCa LINE L1 1995 2068 -4358 366 285 111 43 chr12 43308249 43308456 -100477999 - HAL1 LINE L1 -83 2424 2204 2073 147 0 0 chr12 43308530 43308842 -100477613 - AluSx SINE Alu 0 312 1 365 315 51 60 chr12 43308873 43309108 -100477347 - HAL1 LINE L1 -462 2045 1813 1300 211 125 41 chr12 43309189 43309640 -100476815 - HAL1 LINE L1 -847 1660 1065 2460 80 0 0 chr12 43309640 43309951 -100476504 - AluY SINE Alu 0 311 1 1300 211 125 41 chr12 43309951 43310055 -100476400 - HAL1 LINE L1 -1442 1065 971 1628 151 0 60 chr12 43310160 43310458 -100475997 - AluJo SINE Alu -31 281 2 1995 69 0 47 chr12 43311017 43311292 -100475163 - AluSg SINE Alu -16 294 33 22 88 0 0 chr12 43311362 43311419 -100475036 + AT_rich Low_complexity Low_complexity 1 57 0 1468 226 162 40 chr12 43311419 43312024 -100474431 - L1ME3A LINE L1 -50 6120 5442 26 30 0 0 chr12 43312332 43312365 -100474090 + AT_rich Low_complexity Low_complexity 1 33 0 2558 69 0 0 chr12 43312892 43313196 -100473259 + AluSc SINE Alu 1 304 -5 203 184 0 0 chr12 43313742 43313780 -100472675 + A-rich Low_complexity Low_complexity 1 38 0 297 75 0 0 chr12 43314405 43314445 -100472010 + (T)n Simple_repeat Simple_repeat 1 40 0 507 216 109 69 chr12 43317175 43317504 -100468951 - L1MC4a LINE L1 -87 6034 5696 441 260 121 13 chr12 43317510 43317683 -100468772 - MIR SINE MIR -34 228 32 1837 163 0 31 chr12 43318372 43318691 -100467764 - AluSx SINE Alu -3 309 1 1647 209 3 3 chr12 43318756 43319053 -100467402 + AluJb SINE Alu 1 297 -15 839 117 8 8 chr12 43319702 43319822 -100466633 - FLAM_C SINE Alu -23 120 1 321 242 99 39 chr12 43320111 43320157 -100466298 - L1ME3A LINE L1 -15 6155 6113 828 165 0 0 chr12 43320157 43320290 -100466165 - FLAM_A SINE Alu 0 133 1 321 242 99 39 chr12 43320290 43320425 -100466030 - L1ME3A LINE L1 -57 6113 5963 490 230 227 29 chr12 43320492 43320770 -100465685 - L1ME3A LINE L1 -202 5960 5628 21 0 0 0 chr12 43321137 43321158 -100465297 + AT_rich Low_complexity Low_complexity 1 21 0 325 296 61 0 chr12 43321352 43321467 -100464988 + MIR SINE MIR 121 242 -20 1761 169 28 0 chr12 43321942 43322226 -100464229 + AluJb SINE Alu 1 292 -20 507 177 122 61 chr12 43322309 43322456 -100463999 - MER5B DNA MER1_type -14 164 9 292 214 11 67 chr12 43323398 43323487 -100462968 - L1ME3A LINE L1 -518 5603 5520 2306 87 3 10 chr12 43323575 43323873 -100462582 - AluSp SINE Alu -17 296 1 1744 174 10 0 chr12 43324663 43324961 -100461494 + AluJo SINE Alu 1 301 -11 396 298 181 12 chr12 43325120 43325291 -100461164 + MIR SINE MIR 47 246 -16 2179 119 0 3 chr12 43325440 43325734 -100460721 + AluJb SINE Alu 13 305 -7 244 250 59 0 chr12 43325758 43325826 -100460629 + L1MC/D LINE L1 5689 5760 -2048 1712 181 0 3 chr12 43325992 43326279 -100460176 - AluJo SINE Alu -20 292 7 2224 73 18 0 chr12 43326557 43326843 -100459612 + AluY SINE Alu 1 291 -20 2049 119 34 0 chr12 43326916 43327210 -100459245 + AluSx SINE Alu 1 304 -8 2427 73 3 0 chr12 43329462 43329763 -100456692 - AluSq SINE Alu -11 302 1 29 0 0 0 chr12 43332142 43332171 -100454284 + AT_rich Low_complexity Low_complexity 1 29 0 1070 138 6 0 chr12 43332171 43332331 -100454124 - AluSg/x SINE Alu -18 294 134 2171 99 27 0 chr12 43332331 43332623 -100453832 - AluSg SINE Alu -10 300 1 2161 86 21 7 chr12 43333753 43334043 -100452412 + AluSq SINE Alu 1 294 -19 30 27 0 0 chr12 43337343 43337380 -100449075 + AT_rich Low_complexity Low_complexity 1 37 0 2042 123 0 39 chr12 43337631 43337940 -100448515 - AluJb SINE Alu -15 297 1 21 0 0 0 chr12 43338013 43338034 -100448421 + AT_rich Low_complexity Low_complexity 1 21 0 810 169 38 16 chr12 43338169 43338353 -100448102 - L1MA8 LINE L1 -3 6288 6101 917 151 164 9 chr12 43338353 43338572 -100447883 - Tigger2 DNA MER2_type -2 2716 2464 1562 155 41 4 chr12 43338628 43338899 -100447556 - Tigger2 DNA MER2_type -1961 757 477 558 165 0 0 chr12 43338949 43339034 -100447421 - AluJb SINE Alu -24 288 204 2191 149 46 14 chr12 43339034 43339471 -100446984 - Tigger2 DNA MER2_type -2267 451 1 1367 155 78 14 chr12 43339471 43339767 -100446688 - L1MA7 LINE L1 -195 6096 5782 23 0 0 0 chr12 43339943 43339966 -100446489 + AT_rich Low_complexity Low_complexity 1 23 0 453 219 54 58 chr12 43340454 43340685 -100445770 - L1ME2 LINE L1 -9 6157 5924 829 161 0 15 chr12 43392368 43392505 -100393950 + FRAM SINE Alu 21 155 -21 601 226 60 18 chr12 43392511 43392679 -100393776 + MER104 DNA Tc2 6 180 0 1000 211 10 14 chr12 43392823 43393031 -100393424 - MER3 DNA MER1_type 0 209 3 477 297 140 22 chr12 43393138 43393360 -100393095 + MIR SINE MIR 14 261 -1 280 390 53 18 chr12 43393482 43393710 -100392745 - L2 LINE L2 -201 3071 2836 3147 242 116 28 chr12 43393837 43395253 -100391202 + L2 LINE L2 1784 3313 0 270 321 48 0 chr12 43395306 43395390 -100391065 - L2 LINE L2 0 3272 3185 236 252 224 28 chr12 43395372 43395515 -100390940 - L2 LINE L2 -858 2456 2286 * 187 316 51 51 chr12 43396586 43396684 -100389771 + L2 LINE L2 3168 3265 -7 288 316 128 23 chr12 43396871 43397004 -100389451 - L2 LINE L2 -5 3267 3121 450 316 151 0 chr12 43397064 43397216 -100389239 - MER5A DNA MER1_type -6 183 9 242 371 29 0 chr12 43397215 43397320 -100389135 - MIR SINE MIR -63 199 92 * 7531 135 45 3 chr12 43397323 43398472 -100387983 + ERVL-B2 LTR ERVL 3422 4619 -1145 1403 142 45 61 chr12 43398579 43399919 -100386536 - SVA Other Other -710 868 432 7532 124 20 14 chr12 43399920 43401062 -100385393 + ERVL-B2 LTR ERVL 4609 5757 -7 3329 150 6 29 chr12 43401062 43401589 -100384866 + MLT2B2 LTR ERVL 1 515 0 939 175 28 88 chr12 43401748 43401999 -100384456 - MER106A DNA MER1_type 0 236 1 639 306 141 8 chr12 43402042 43402290 -100384165 - L3 LINE CR1 -1 1576 1296 181 305 95 19 chr12 43402426 43402531 -100383924 - L3 LINE CR1 -561 1016 904 356 292 122 22 chr12 43402662 43402974 -100383481 + HAL1 LINE L1 2165 2507 0 199 247 86 49 chr12 43403032 43403113 -100383342 + MIR3 SINE MIR 77 160 -48 2041 156 0 0 chr12 43403147 43403455 -100383000 + AluJb SINE Alu 1 308 -4 313 291 103 17 chr12 43403736 43403853 -100382602 - MER112 DNA MER1_type -106 154 28 245 317 120 21 chr12 43405485 43405627 -100380828 + MIR SINE MIR 100 255 -7 428 196 18 36 chr12 43406671 43406783 -100379672 + L1MC1 LINE L1 6224 6333 0 1310 191 43 79 chr12 43407169 43407605 -100378850 - MLT2B1 LTR ERVL -5 515 2 508 320 52 26 chr12 43408016 43408210 -100378245 + MIR SINE MIR 15 213 -49 2290 189 10 50 chr12 43408302 43408821 -100377634 - MLT1D LTR MaLR 0 505 8 908 254 163 38 chr12 43409005 43409666 -100376789 - L1ME4a LINE L1 -37 6084 5341 989 279 43 62 chr12 43410054 43410470 -100375985 - HAL1 LINE L1 -2049 458 51 2191 92 0 64 chr12 43411069 43411396 -100375059 + AluSg SINE Alu 1 306 -4 1542 191 72 0 chr12 43411785 43412062 -100374393 - AluJb SINE Alu -15 297 1 1836 167 4 0 chr12 43412359 43412684 -100373771 + AluJo SINE Alu 2 327 0 192 152 0 0 chr12 43413868 43413901 -100372554 + (CA)n Simple_repeat Simple_repeat 1 33 0 3601 25 0 0 chr12 43413960 43414356 -100372099 - L1PA4 LINE L1 0 6155 5760 193 150 25 0 chr12 43414447 43414487 -100371968 - L2 LINE L2 -4 3309 3269 204 338 103 41 chr12 43414749 43414894 -100371561 - L3 LINE CR1 -121 1456 1303 1581 306 102 52 chr12 43415030 43415520 -100370935 - L3 LINE CR1 -353 1224 760 1671 209 10 0 chr12 43415520 43415827 -100370628 - AluJb SINE Alu -2 310 1 790 203 0 0 chr12 43415831 43415964 -100370491 - FLAM_A SINE Alu 0 133 1 1581 306 102 52 chr12 43415964 43416448 -100370007 - L3 LINE CR1 -819 758 196 387 105 0 0 chr12 43416504 43416561 -100369894 + (TCC)n Simple_repeat Simple_repeat 3 59 0 1958 154 0 28 chr12 43416564 43416883 -100369572 - AluSx SINE Alu -2 310 1 217 265 199 44 chr12 43417108 43417244 -100369211 - MIR SINE MIR -98 164 8 24 0 0 0 chr12 43417316 43417340 -100369115 + AT_rich Low_complexity Low_complexity 1 24 0 1939 107 14 45 chr12 43417343 43417634 -100368821 + AluSx SINE Alu 1 282 -30 2359 171 31 0 chr12 43417732 43418123 -100368332 + MER57A LTR ERV1 1 403 0 567 249 100 62 chr12 43418638 43419118 -100367337 - L1MEd LINE L1 -4822 1604 907 293 280 21 0 chr12 43419119 43419212 -100367243 + MIR SINE MIR 147 241 -21 201 74 0 0 chr12 43419513 43419540 -100366915 + (A)n Simple_repeat Simple_repeat 1 27 0 754 176 8 23 chr12 43419550 43419681 -100366774 + FLAM_C SINE Alu 3 131 -12 253 269 124 55 chr12 43419743 43419944 -100366511 + L1M4 LINE L1 3969 4183 -1963 1680 176 3 13 chr12 43420235 43420541 -100365914 + AluJb SINE Alu 1 303 -9 272 295 190 64 chr12 43420655 43421092 -100365363 - L2 LINE L2 -18 3295 2804 274 282 24 0 chr12 43421100 43421185 -100365270 - MLT1L LTR MaLR -6 609 523 23 0 0 0 chr12 43421192 43421215 -100365240 + AT_rich Low_complexity Low_complexity 1 23 0 2289 105 7 10 chr12 43421420 43421724 -100364731 - AluSx SINE Alu -9 303 1 350 228 76 0 chr12 43421848 43421927 -100364528 - MLT1L LTR MaLR -410 205 121 960 153 9 96 chr12 43421961 43422190 -100364265 + Charlie4 DNA MER1_type 5 213 -1748 2243 114 0 0 chr12 43422606 43422903 -100363552 + AluSx SINE Alu 1 297 -15 512 309 105 0 chr12 43422935 43423145 -100363310 + MIR SINE MIR 31 262 0 2360 92 3 0 chr12 43423657 43423961 -100362494 + AluSx SINE Alu 1 305 -7 591 71 0 0 chr12 43424294 43424379 -100362076 + (CTGGGG)n Simple_repeat Simple_repeat 1 85 0 297 225 42 14 chr12 43425089 43425160 -100361295 - MER96 DNA MER1_type? -13 162 90 282 133 0 0 chr12 43425240 43425285 -100361170 - MIR SINE MIR -26 236 192 313 328 188 16 chr12 43426782 43426910 -100359545 + L2 LINE L2 3123 3272 0 294 73 0 0 chr12 43427089 43427130 -100359325 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 188 200 0 0 chr12 43427131 43427166 -100359289 - L2 LINE L2 -14 3299 3265 195 42 0 0 chr12 43427830 43427854 -100358601 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 261 119 0 0 chr12 43429616 43429658 -100356797 + (TTG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr12 43430771 43430792 -100355663 + AT_rich Low_complexity Low_complexity 1 21 0 2067 134 7 0 chr12 43430939 43431246 -100355209 - AluSx SINE Alu -3 309 1 246 271 14 14 chr12 43431335 43431405 -100355050 - MIR3 SINE MIR -6 202 133 23 0 0 0 chr12 43431667 43431690 -100354765 + AT_rich Low_complexity Low_complexity 1 23 0 2352 53 3 10 chr12 43431955 43432259 -100354196 - AluY SINE Alu -9 302 1 722 208 60 102 chr12 43432338 43432603 -100353852 - MER112 DNA MER1_type -2 254 1 507 240 59 54 chr12 43433381 43433585 -100352870 - MIR SINE MIR -25 237 33 2119 82 33 56 chr12 43433866 43434171 -100352284 + AluSx SINE Alu 1 298 -14 340 150 3 195 chr12 43434225 43434373 -100352082 + MER20 DNA MER1_type 1 125 -94 3464 179 76 4 chr12 43434872 43435597 -100350858 + L1MB7 LINE L1 5401 6177 -7 386 291 60 22 chr12 43435601 43435735 -100350720 - L2 LINE L2 -12 3301 3163 1704 136 7 51 chr12 43436688 43436982 -100349473 - AluJo SINE Alu -21 291 11 307 254 77 39 chr12 43437890 43438020 -100348435 - MIR SINE MIR -56 206 72 423 0 0 0 chr12 43438110 43438157 -100348298 + (TTA)n Simple_repeat Simple_repeat 2 48 0 2074 121 0 0 chr12 43438159 43438440 -100348015 - AluSx SINE Alu -31 281 1 1556 146 0 108 chr12 43438709 43439044 -100347411 + AluJb SINE Alu 1 299 -13 2785 13 0 0 chr12 43439050 43439352 -100347103 - AluYa5 SINE Alu -9 302 1 346 264 104 37 chr12 43439462 43439625 -100346830 - MIR SINE MIR -36 226 53 1749 175 24 0 chr12 43441924 43442035 -100344420 + AluJb SINE Alu 1 108 -204 185 0 0 39 chr12 43442035 43442061 -100344394 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1749 175 24 0 chr12 43442061 43442246 -100344209 + AluJb SINE Alu 108 304 -8 222 214 68 0 chr12 43442451 43442554 -100343901 + (TA)n Simple_repeat Simple_repeat 1 110 0 301 179 60 0 chr12 43442566 43442650 -100343805 + (TATAA)n Simple_repeat Simple_repeat 2 90 0 434 312 0 16 chr12 43442671 43442796 -100343659 - L2 LINE L2 -20 3293 3171 2018 98 0 0 chr12 43442810 43443065 -100343390 + AluSq SINE Alu 1 255 -58 22 35 0 0 chr12 43443074 43443103 -100343352 + AT_rich Low_complexity Low_complexity 1 29 0 213 39 0 0 chr12 43443154 43443180 -100343275 + (TG)n Simple_repeat Simple_repeat 2 27 0 828 239 98 17 chr12 43443366 43443600 -100342855 + MIR SINE MIR 10 262 0 928 181 0 6 chr12 43443695 43443855 -100342600 + AluJb SINE Alu 136 294 -18 195 242 11 22 chr12 43443924 43444015 -100342440 + GA-rich Low_complexity Low_complexity 3 92 0 281 309 0 0 chr12 43444399 43444467 -100341988 - L2 LINE L2 -205 3067 3000 1622 197 17 0 chr12 43445127 43445416 -100341039 + AluJb SINE Alu 1 294 -18 888 267 86 75 chr12 43445523 43445976 -100340479 - L2 LINE L2 -20 3293 2836 828 230 85 94 chr12 43445985 43446398 -100340057 - Charlie7 DNA MER1_type -2148 464 56 563 250 0 0 chr12 43446879 43446987 -100339468 - MER81 DNA DNA -6 108 1 357 43 0 0 chr12 43447252 43447299 -100339156 + (CA)n Simple_repeat Simple_repeat 2 48 0 1021 268 97 46 chr12 43448317 43449032 -100337423 - L2 LINE L2 -1 3312 2440 2454 141 63 24 chr12 43449032 43449444 -100337011 + MSTA LTR MaLR 1 428 0 1021 268 97 46 chr12 43449444 43449576 -100336879 - L2 LINE L2 -873 2440 2316 590 243 56 80 chr12 43449623 43449961 -100336494 - L1MC5 LINE L1 -30 7931 7602 4363 181 54 13 chr12 43449968 43450588 -100335867 + L1MB3 LINE L1 4812 5406 -777 222 37 0 0 chr12 43450588 43450615 -100335840 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 4363 181 54 13 chr12 43450615 43451309 -100335146 + L1MB3 LINE L1 5406 6182 -1 595 257 83 38 chr12 43451310 43451754 -100334701 - L1MC5 LINE L1 -347 7614 7244 * 1412 265 87 63 chr12 43451751 43452038 -100334417 - L1MC4 LINE L1 -739 7222 6943 2359 105 3 0 chr12 43452038 43452344 -100334111 - AluSq SINE Alu -6 307 1 1412 265 87 63 chr12 43452344 43452441 -100334014 - L1MC4 LINE L1 -1018 6943 6850 1753 184 33 0 chr12 43452441 43452740 -100333715 - AluJo SINE Alu -3 309 1 1412 265 87 63 chr12 43452740 43453054 -100333401 - L1MC4 LINE L1 -1111 6850 6545 2342 125 31 19 chr12 43453054 43453414 -100333041 - THE1B LTR MaLR 0 364 1 2136 136 0 0 chr12 43453421 43453723 -100332732 - AluSx SINE Alu -10 302 1 1412 265 87 63 chr12 43453723 43453735 -100332720 - L1MC4 LINE L1 -1421 6540 6530 197 0 71 0 chr12 43453735 43453763 -100332692 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1741 187 7 0 chr12 43453770 43454054 -100332401 - AluJb SINE Alu -26 286 1 1412 265 87 63 chr12 43454054 43455419 -100331036 - L1MC4 LINE L1 -1436 6525 5194 1870 158 0 26 chr12 43455419 43455729 -100330726 - AluJo SINE Alu -9 303 2 1412 265 87 63 chr12 43455729 43456310 -100330145 - L1MC4 LINE L1 -2767 5194 4628 2505 49 0 13 chr12 43456310 43456616 -100329839 - AluY SINE Alu -9 302 1 1412 265 87 63 chr12 43456616 43456832 -100329623 - L1MC4 LINE L1 -3333 4628 4419 677 122 103 0 chr12 43456832 43456939 -100329516 + FLAM_C SINE Alu 1 118 -15 1412 265 87 63 chr12 43456939 43457238 -100329217 - L1MC4 LINE L1 -3542 4419 4018 502 252 145 25 chr12 43457350 43457509 -100328946 - MER5A DNA MER1_type -3 186 9 344 227 80 0 chr12 43458134 43458209 -100328246 - L2 LINE L2 -34 3279 3199 228 286 95 38 chr12 43458247 43458352 -100328103 - MER5B DNA MER1_type -20 158 48 302 268 162 33 chr12 43460740 43460945 -100325510 + MIR SINE MIR 13 256 -6 239 217 105 0 chr12 43460974 43461065 -100325390 + MIR SINE MIR 104 211 -51 261 0 0 0 chr12 43461896 43461925 -100324530 + (A)n Simple_repeat Simple_repeat 1 29 0 32 57 0 0 chr12 43462029 43462082 -100324373 + AT_rich Low_complexity Low_complexity 1 53 0 23 0 0 0 chr12 43462102 43462125 -100324330 + AT_rich Low_complexity Low_complexity 1 23 0 372 250 50 0 chr12 43462131 43462231 -100324224 - MER106B DNA MER1_type -907 152 48 427 344 173 2 chr12 43462730 43463158 -100323297 + L2 LINE L2 2201 2701 -613 1319 142 164 51 chr12 43464711 43464985 -100321470 - AluJo SINE Alu -7 305 1 28 0 0 0 chr12 43465401 43465429 -100321026 + AT_rich Low_complexity Low_complexity 1 28 0 764 183 8 0 chr12 43465435 43465561 -100320894 - FLAM_A SINE Alu -6 127 1 1173 91 246 5 chr12 43465693 43465880 -100320575 + AluSg1 SINE Alu 1 232 -77 270 217 0 0 chr12 43465885 43465954 -100320501 + GA-rich Low_complexity Low_complexity 3 71 0 2454 84 0 6 chr12 43467789 43468100 -100318355 + AluSc SINE Alu 1 309 0 234 0 0 0 chr12 43468224 43468250 -100318205 + (CA)n Simple_repeat Simple_repeat 2 27 0 22 56 0 0 chr12 43468619 43468655 -100317800 + AT_rich Low_complexity Low_complexity 1 36 0 506 283 75 57 chr12 43469396 43469601 -100316854 + HAL1 LINE L1 859 1072 -1435 1812 185 7 3 chr12 43469601 43469898 -100316557 + AluJo SINE Alu 6 303 -9 506 283 75 57 chr12 43469898 43469957 -100316498 + HAL1 LINE L1 1072 1128 -1379 977 168 6 35 chr12 43469960 43470133 -100316322 + FRAM SINE Alu 1 163 -13 491 238 104 18 chr12 43470183 43470347 -100316108 + FRAM SINE Alu 1 176 0 406 278 119 63 chr12 43470423 43470572 -100315883 + HAL1 LINE L1 1290 1429 -1078 1800 149 23 26 chr12 43470572 43470880 -100315575 + AluJo SINE Alu 5 311 -1 406 278 119 63 chr12 43470880 43471065 -100315390 + HAL1 LINE L1 1429 1643 -864 972 267 11 30 chr12 43471071 43471337 -100315118 - MIR SINE MIR 0 262 2 314 305 0 25 chr12 43471356 43471474 -100314981 + HAL1 LINE L1 1655 1769 -738 2371 137 31 49 chr12 43472117 43472439 -100314016 + MER65A LTR ERV1 1 314 -131 2183 96 30 3 chr12 43472439 43472741 -100313714 + AluSg SINE Alu 1 310 0 2371 137 31 49 chr12 43472741 43472871 -100313584 + MER65A LTR ERV1 314 445 0 272 344 193 12 chr12 43473174 43473444 -100313011 - L2 LINE L2 -229 3043 2823 848 274 71 69 chr12 43473444 43473907 -100312548 + LTR16B LTR ERVL 1 464 0 272 344 193 12 chr12 43473907 43474193 -100312262 - L2 LINE L2 -449 2823 2392 1194 184 26 13 chr12 43474380 43474608 -100311847 + AluJb SINE Alu 74 304 -8 2103 133 3 3 chr12 43474818 43475118 -100311337 + AluSx SINE Alu 1 300 -12 189 0 0 0 chr12 43475120 43475141 -100311314 + (GA)n Simple_repeat Simple_repeat 2 22 0 1018 197 26 11 chr12 43475141 43475372 -100311083 + MLT1D LTR MaLR 237 501 -4 215 217 12 72 chr12 43475851 43475934 -100310521 + (TA)n Simple_repeat Simple_repeat 2 79 0 303 211 79 0 chr12 43475935 43476049 -100310406 + L1ME4a LINE L1 5994 6116 -5 23 92 0 0 chr12 43476052 43476117 -100310338 + AT_rich Low_complexity Low_complexity 1 65 0 365 327 86 32 chr12 43476899 43477119 -100309336 + L2 LINE L2 3082 3313 0 364 353 134 28 chr12 43477413 43478264 -100308191 - L2 LINE L2 -167 3105 2127 21 71 0 0 chr12 43478432 43478474 -100307981 + AT_rich Low_complexity Low_complexity 1 42 0 3372 124 12 0 chr12 43479471 43479977 -100306478 - MER41E LTR ERV1 0 512 1 279 262 199 21 chr12 43480659 43480850 -100305605 + L2 LINE L2 2992 3216 -97 468 261 70 35 chr12 43481800 43481999 -100304456 + MIR SINE MIR 57 262 0 665 203 271 21 chr12 43482620 43482812 -100303643 - MIR SINE MIR -21 241 2 1350 226 191 31 chr12 43482852 43483361 -100303094 - MLT1E LTR MaLR 0 593 4 479 191 0 0 chr12 43483396 43483485 -100302970 - MIR SINE MIR -6 256 168 1693 152 62 17 chr12 43483785 43484074 -100302381 - AluJb SINE Alu -10 302 1 232 285 120 50 chr12 43484632 43484990 -100301465 + L1M4 LINE L1 3715 4097 -2049 226 243 19 29 chr12 43485111 43485214 -100301241 + (TA)n Simple_repeat Simple_repeat 1 102 0 2159 119 0 0 chr12 43485391 43485677 -100300778 - AluSx SINE Alu -23 289 4 2112 125 7 0 chr12 43485774 43486063 -100300392 + AluSg SINE Alu 1 291 -19 1982 171 3 0 chr12 43486121 43486419 -100300036 - AluJo SINE Alu -13 299 1 259 319 43 11 chr12 43487203 43487297 -100299158 - L2 LINE L2 -2 3270 3174 1015 322 136 37 chr12 43487465 43488583 -100297872 - L2 LINE L2 -1 3271 2265 1474 188 8 160 chr12 43488583 43488646 -100297809 - MLT1D LTR MaLR 0 505 434 1657 159 25 53 chr12 43488646 43488966 -100297489 + AluJb SINE Alu 1 311 -1 1474 188 8 160 chr12 43488966 43488988 -100297467 - MLT1D LTR MaLR -71 434 410 1853 168 10 10 chr12 43488988 43489285 -100297170 + AluJo SINE Alu 2 298 -14 1474 188 8 160 chr12 43489285 43489793 -100296662 - MLT1D LTR MaLR -95 410 1 1015 322 136 37 chr12 43489793 43489822 -100296633 - L2 LINE L2 -1007 2265 2005 613 245 29 0 chr12 43489857 43489996 -100296459 + MIR SINE MIR 85 227 -35 237 339 115 16 chr12 43490026 43490218 -100296237 - L2 LINE L2 -1354 1960 1750 285 222 78 0 chr12 43490817 43490907 -100295548 - L1MC5 LINE L1 -65 7896 7800 2261 92 45 36 chr12 43490946 43491303 -100295152 + THE1B LTR MaLR 5 364 0 189 0 0 0 chr12 43491324 43491345 -100295110 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1822 163 0 3 chr12 43491352 43491640 -100294815 + AluJb SINE Alu 1 287 -25 47 70 0 9 chr12 43491640 43491680 -100294775 + AT_rich Low_complexity Low_complexity 1 40 -73 1912 134 14 14 chr12 43491680 43491970 -100294485 + AluJb SINE Alu 1 290 -22 47 70 0 9 chr12 43491970 43492043 -100294412 + AT_rich Low_complexity Low_complexity 40 113 0 28 29 0 0 chr12 43493026 43493061 -100293394 + AT_rich Low_complexity Low_complexity 1 35 0 409 205 24 0 chr12 43493129 43493212 -100293243 + MLT1J LTR MaLR 104 188 -323 1045 197 3 88 chr12 43493249 43493373 -100293082 + L1MB3 LINE L1 4898 5031 -1115 2853 116 38 7 chr12 43493373 43493820 -100292635 - MER65C LTR ERV1 0 461 1 2443 94 0 0 chr12 43493829 43494137 -100292318 - AluY SINE Alu -3 308 1 1045 197 3 88 chr12 43494137 43494262 -100292193 + L1MB3 LINE L1 5039 5118 -1028 1600 134 123 15 chr12 43494262 43494523 -100291932 - AluSx SINE Alu -23 289 1 1045 197 3 88 chr12 43494523 43494638 -100291817 + L1MB3 LINE L1 5118 5241 -905 1631 173 32 29 chr12 43494638 43494885 -100291570 - MER7A DNA MER2_type -2692 346 98 4065 140 120 7 chr12 43494885 43495627 -100290828 + LTR1B LTR ERV1 1 826 0 1631 173 32 29 chr12 43495627 43495725 -100290730 - MER7A DNA MER2_type -2940 98 2 4832 146 20 34 chr12 43495740 43496159 -100290296 + L1MB3 LINE L1 5254 5677 -506 1632 171 58 0 chr12 43496159 43496433 -100290022 + AluJb SINE Alu 2 291 -21 4832 146 20 34 chr12 43496433 43496946 -100289509 + L1MB3 LINE L1 5677 6173 -10 372 213 0 0 chr12 43496988 43497063 -100289392 + MLT1J LTR MaLR 228 302 -209 203 231 51 0 chr12 43497067 43497106 -100289349 + MER91 DNA MER1_type 24 64 -76 409 168 53 11 chr12 43497116 43497211 -100289244 + MLT1J LTR MaLR 413 511 0 359 0 43 0 chr12 43497217 43497263 -100289192 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 215 277 0 0 chr12 43497656 43497721 -100288734 - MIR SINE MIR -34 228 164 747 290 14 18 chr12 43498298 43498519 -100287936 + LTR16C LTR ERVL 188 407 -84 3635 191 14 4 chr12 43498524 43499227 -100287228 + MER21-int LTR ERV1 14 723 -3468 1563 257 71 42 chr12 43499285 43499946 -100286509 - MSTC-int LTR MaLR -667 984 305 1981 146 34 3 chr12 43499946 43500146 -100286309 - MSTC LTR MaLR -89 339 124 2026 164 49 8 chr12 43500146 43500531 -100285924 + MER57A LTR ERV1 1 401 -2 1981 146 34 3 chr12 43500531 43500653 -100285802 - MSTC LTR MaLR -304 124 7 3501 227 38 17 chr12 43500663 43501523 -100284932 + MER21-int LTR ERV1 760 1637 -2554 2988 188 26 3 chr12 43501603 43502172 -100284283 + MER21-int LTR ERV1 1638 2219 -1972 1174 131 55 5 chr12 43502179 43502378 -100284077 + MER2 DNA MER2_type 2 210 -135 29 0 0 0 chr12 43502423 43502452 -100284003 + AT_rich Low_complexity Low_complexity 1 29 0 692 142 58 8 chr12 43502452 43502572 -100283883 - FLAM_C SINE Alu -17 126 1 4187 187 39 13 chr12 43502637 43503499 -100282956 + MER21-int LTR ERV1 2241 3104 -1087 213 308 67 39 chr12 43503977 43504081 -100282374 - L2 LINE L2 0 3272 3166 863 132 0 16 chr12 43504654 43504783 -100281672 + FLAM_C SINE Alu 4 130 -3 1975 154 0 3 chr12 43504787 43505106 -100281349 + AluSx SINE Alu 1 318 0 361 214 11 0 chr12 43505494 43505583 -100280872 + L1MEc LINE L1 1902 1991 -4405 966 231 24 47 chr12 43506024 43506174 -100280281 + MIR SINE MIR 13 156 -106 2197 110 35 27 chr12 43506174 43506546 -100279909 - THE1C LTR MaLR 0 375 1 966 231 24 47 chr12 43506546 43506650 -100279805 + MIR SINE MIR 156 261 -1 304 246 0 0 chr12 43506988 43507049 -100279406 - L2 LINE L2 -7 3306 3246 3520 181 95 20 chr12 43507226 43507972 -100278483 - MER21B LTR ERV1 -61 802 1 1668 178 21 66 chr12 43508077 43508499 -100277956 + MER57A LTR ERV1 1 403 0 2260 133 99 22 chr12 43508679 43509094 -100277361 - MER72 LTR ERV1 0 722 276 6381 173 165 20 chr12 43509100 43510633 -100275822 - MER52A LTR ERV1 0 1755 1 1369 168 22 11 chr12 43510635 43510903 -100275552 - MER72 LTR ERV1 -451 271 1 2341 80 0 0 chr12 43511875 43512162 -100274293 + AluSg SINE Alu 1 287 -23 237 33 0 0 chr12 43512641 43512671 -100273784 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 579 274 33 52 chr12 43514393 43514610 -100271845 - L1MEc LINE L1 -4729 1581 1372 1924 130 27 30 chr12 43514610 43514909 -100271546 - AluSx SINE Alu -14 298 1 579 274 33 52 chr12 43514909 43515053 -100271402 - L1MEc LINE L1 -4938 1372 1227 243 0 0 0 chr12 43515075 43515102 -100271353 + (TA)n Simple_repeat Simple_repeat 2 28 0 868 92 8 0 chr12 43515108 43515239 -100271216 - L1PA13 LINE L1 0 6163 6032 340 283 66 75 chr12 43515254 43515480 -100270975 - L1MEc LINE L1 -5732 387 164 313 205 0 51 chr12 43515528 43515606 -100270849 - L1MEc LINE L1 -5974 145 72 1510 127 4 8 chr12 43515682 43515919 -100270536 + L1PA11 LINE L1 5935 6170 -4 410 260 191 12 chr12 43516011 43516184 -100270271 - MIR SINE MIR -4 258 55 351 0 0 0 chr12 43516718 43516757 -100269698 + (TG)n Simple_repeat Simple_repeat 2 40 0 1692 187 0 7 chr12 43516759 43517042 -100269413 - AluJb SINE Alu -31 281 1 478 207 207 0 chr12 43517049 43517189 -100269266 - L1PB4 LINE L1 -2 6154 5986 249 253 48 24 chr12 43517374 43517457 -100268998 + MER94 DNA DNA 41 125 -9 267 304 38 70 chr12 43518098 43518256 -100268199 + L3 LINE CR1 966 1118 -459 494 340 140 13 chr12 43518410 43518875 -100267580 + L2 LINE L2 1488 2011 -1303 844 102 0 0 chr12 43518877 43518995 -100267460 + AluSc SINE Alu 192 309 0 200 317 0 37 chr12 43519022 43519104 -100267351 + L2 LINE L2 1999 2077 -1237 2088 189 59 4 chr12 43519117 43519589 -100266866 - LTR54B LTR ERV1 0 498 1 360 332 224 19 chr12 43519640 43520059 -100266396 + L2 LINE L2 2200 2704 -610 197 250 53 26 chr12 43520274 43520350 -100266105 + L2 LINE L2 3008 3085 -187 586 265 62 6 chr12 43520452 43520614 -100265841 - MIR SINE MIR 0 262 92 230 322 33 22 chr12 43520747 43520823 -100265632 + L3 LINE CR1 1305 1384 -193 1724 168 3 14 chr12 43520823 43521115 -100265340 + AluJo SINE Alu 1 289 -23 230 322 33 22 chr12 43521115 43521128 -100265327 + L3 LINE CR1 1384 1395 -182 203 208 0 19 chr12 43521253 43521306 -100265149 + T-rich Low_complexity Low_complexity 5 56 0 380 163 245 0 chr12 43521530 43521628 -100264827 + L2 LINE L2 3187 3308 -5 211 271 0 0 chr12 43521705 43521753 -100264702 + L3 LINE CR1 1494 1541 -36 198 103 0 0 chr12 43521799 43521828 -100264627 + (GAAAA)n Simple_repeat Simple_repeat 3 31 0 1078 203 77 0 chr12 43522091 43522298 -100264157 + AluJb SINE Alu 87 309 -3 336 122 0 0 chr12 43523331 43523380 -100263075 + MER66A LTR ERV1 289 337 -141 25 0 0 0 chr12 43523380 43523405 -100263050 + AT_rich Low_complexity Low_complexity 1 25 0 30 89 0 0 chr12 43523716 43523795 -100262660 + AT_rich Low_complexity Low_complexity 1 79 0 2045 160 15 0 chr12 43524297 43524640 -100261815 - MER7A DNA MER2_type 0 346 1 1753 170 14 0 chr12 43524787 43525090 -100261365 - AluJb SINE Alu 0 307 1 1738 141 25 21 chr12 43525193 43525477 -100260978 - AluJb SINE Alu -17 295 11 669 130 0 19 chr12 43525563 43525671 -100260784 - FLAM_A SINE Alu -16 126 21 197 33 33 0 chr12 43525765 43525795 -100260660 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1520 178 37 0 chr12 43525846 43526116 -100260339 - AluJo SINE Alu -14 298 19 265 259 170 9 chr12 43528359 43528471 -100257984 - L2 LINE L2 0 3313 3184 388 188 50 0 chr12 43528615 43528695 -100257760 - MER103 DNA DNA -73 93 10 327 311 0 0 chr12 43528708 43528798 -100257657 + L1MC4 LINE L1 6614 6703 -1339 * 329 311 0 0 chr12 43528742 43528832 -100257623 - L1MC4 LINE L1 -1339 6703 6614 565 251 6 6 chr12 43528837 43529016 -100257439 + (TA)n Simple_repeat Simple_repeat 1 179 0 1585 188 27 3 chr12 43529498 43529791 -100256664 - AluJo SINE Alu -12 300 1 807 149 21 57 chr12 43530695 43530836 -100255619 - AluJo SINE Alu -176 136 1 1506 170 60 7 chr12 43532136 43532436 -100254019 - MLT1A1 LTR MaLR -11 354 39 1777 165 0 26 chr12 43532956 43533265 -100253190 + AluJo SINE Alu 1 301 -11 207 0 0 0 chr12 43533629 43533652 -100252803 + (T)n Simple_repeat Simple_repeat 1 23 0 714 178 0 0 chr12 43533913 43534031 -100252424 - FLAM_C SINE Alu -15 118 1 1490 169 12 75 chr12 43535085 43535404 -100251051 + AluJo SINE Alu 1 299 -13 21 0 0 0 chr12 43536836 43536857 -100249598 + AT_rich Low_complexity Low_complexity 1 21 0 576 139 0 0 chr12 43537255 43537341 -100249114 - FRAM/FAM SINE Alu -91 85 1 21 0 0 0 chr12 43537913 43537934 -100248521 + AT_rich Low_complexity Low_complexity 1 21 0 307 258 140 54 chr12 43542040 43542261 -100244194 - L1M2 LINE L1 -5931 918 679 21 0 0 0 chr12 43542346 43542367 -100244088 + GC_rich Low_complexity Low_complexity 1 21 0 320 129 24 35 chr12 43542640 43542725 -100243730 + CT-rich Low_complexity Low_complexity 4 87 0 375 23 0 0 chr12 43542726 43542770 -100243685 + (CCG)n Simple_repeat Simple_repeat 1 44 0 331 318 106 62 chr12 43543260 43543600 -100242855 - L1M2 LINE L1 -5845 1004 650 198 0 0 0 chr12 43543934 43543956 -100242499 + (T)n Simple_repeat Simple_repeat 1 22 0 27 49 0 0 chr12 43544937 43544978 -100241477 + AT_rich Low_complexity Low_complexity 1 41 0 430 114 0 0 chr12 43547018 43547088 -100239367 + L1MA3 LINE L1 6236 6305 0 2168 105 0 0 chr12 43547147 43547465 -100238990 + AluSx SINE Alu 1 318 0 378 0 0 0 chr12 43548479 43548521 -100237934 + (TG)n Simple_repeat Simple_repeat 2 43 0 616 164 9 17 chr12 43548521 43548637 -100237818 - FLAM_C SINE Alu -18 115 1 2363 81 0 3 chr12 43549135 43549432 -100237023 + AluY SINE Alu 1 296 -15 367 160 0 27 chr12 43549836 43549911 -100236544 + MER103 DNA DNA 42 114 -52 225 62 0 0 chr12 43550008 43550040 -100236415 + HSMAR1 DNA Mariner 1256 1287 0 410 230 81 57 chr12 43550409 43550706 -100235749 - L1MC5 LINE L1 -466 7495 7238 290 190 0 17 chr12 43550721 43550779 -100235676 + MER5A DNA MER1_type 128 184 -5 24 0 0 0 chr12 43551068 43551092 -100235363 + AT_rich Low_complexity Low_complexity 1 24 0 2122 128 16 3 chr12 43551365 43551671 -100234784 - AluSx SINE Alu -2 310 1 306 0 0 0 chr12 43551840 43551874 -100234581 + (T)n Simple_repeat Simple_repeat 1 34 0 2202 98 7 33 chr12 43552033 43552339 -100234116 - AluSq SINE Alu -15 298 1 456 32 0 0 chr12 43552499 43552562 -100233893 - AluY SINE Alu -6 306 244 26 30 0 0 chr12 43552818 43552851 -100233604 + AT_rich Low_complexity Low_complexity 1 33 0 2824 230 194 42 chr12 43553632 43554256 -100232199 - L1MC4 LINE L1 -216 7826 7298 1588 173 10 30 chr12 43554256 43554557 -100231898 - AluJb SINE Alu -17 295 1 2824 230 194 42 chr12 43554557 43555221 -100231234 - L1MC4 LINE L1 -744 7298 6342 1530 174 24 7 chr12 43555242 43555530 -100230925 + MER7A DNA MER2_type 1 291 -55 1129 208 78 76 chr12 43555622 43556084 -100230371 - L1MC4 LINE L1 -1925 5883 5421 1949 121 0 56 chr12 43556132 43556438 -100230017 + AluSg SINE Alu 1 289 -21 739 258 13 0 chr12 43556439 43556594 -100229861 - FAM SINE Alu -17 158 2 595 281 86 51 chr12 43556677 43557250 -100229205 - L1MC4 LINE L1 -1488 4658 4066 2008 132 3 7 chr12 43558621 43558909 -100227546 - AluSx SINE Alu -25 287 1 1646 171 10 29 chr12 43559161 43559470 -100226985 - AluJb SINE Alu -9 303 1 590 229 102 6 chr12 43559656 43559822 -100226633 - MIR SINE MIR -5 257 76 2410 54 0 10 chr12 43559835 43560129 -100226326 - AluY SINE Alu -20 291 1 23 0 0 0 chr12 43560277 43560300 -100226155 + AT_rich Low_complexity Low_complexity 1 23 0 230 253 120 13 chr12 43560356 43560431 -100226024 - MIR SINE MIR -56 206 124 14512 128 38 5 chr12 43560969 43561140 -100225315 - Tigger1 DNA MER2_type 0 2418 2254 1473 156 12 111 chr12 43561140 43561474 -100224981 + AluJb SINE Alu 1 301 -11 14512 128 38 5 chr12 43561474 43563644 -100222811 - Tigger1 DNA MER2_type -164 2254 1 885 247 86 16 chr12 43563785 43564028 -100222427 - MIR SINE MIR -1 261 2 771 255 178 34 chr12 43564034 43564618 -100221837 - L2 LINE L2 0 3313 2622 2166 129 18 0 chr12 43564637 43564969 -100221486 - MER7A DNA MER2_type -10 336 1 298 261 33 43 chr12 43564969 43565061 -100221394 - L2 LINE L2 -700 2614 2524 318 331 62 15 chr12 43565360 43565490 -100220965 + L2 LINE L2 3137 3272 0 1524 173 94 7 chr12 43565579 43565856 -100220599 - AluJo SINE Alu -11 301 1 1906 81 3 121 chr12 43566039 43566371 -100220084 + AluSg1 SINE Alu 1 293 -16 689 229 154 18 chr12 43566394 43566621 -100219834 + MIR SINE MIR 5 262 0 1964 121 32 0 chr12 43566663 43566944 -100219511 - AluJo SINE Alu -12 300 11 386 273 165 21 chr12 43566951 43567193 -100219262 + MARNA DNA Mariner 268 544 -42 746 357 27 53 chr12 43567512 43567924 -100218531 + L2 LINE L2 2872 3272 0 2164 118 0 0 chr12 43568969 43569266 -100217189 - AluSx SINE Alu -15 297 1 999 169 0 3 chr12 43569745 43569976 -100216479 + AluJb SINE Alu 1 299 -13 1065 86 132 86 chr12 43571340 43571560 -100214895 - MER30 DNA MER1_type 0 230 1 991 269 138 15 chr12 43571625 43571952 -100214503 - MLT1J LTR MaLR -45 466 100 202 244 0 0 chr12 43572065 43572110 -100214345 + (TA)n Simple_repeat Simple_repeat 2 46 0 581 153 54 18 chr12 43572806 43572917 -100213538 - FLAM_A SINE Alu -18 115 1 444 285 146 16 chr12 43573143 43573389 -100213066 - L1MDa LINE L1 -3201 3339 3062 240 185 0 37 chr12 43573528 43573609 -100212846 + T-rich Low_complexity Low_complexity 1 78 0 24 67 0 0 chr12 43573878 43573923 -100212532 + AT_rich Low_complexity Low_complexity 1 45 0 693 251 6 6 chr12 43573923 43574086 -100212369 - FRAM SINE Alu -3 163 1 255 193 125 38 chr12 43574087 43574191 -100212264 - L1MDa LINE L1 -3929 2611 2499 331 309 54 60 chr12 43574377 43574824 -100211631 - HAL1 LINE L1 -744 1763 1320 5269 150 9 6 chr12 43674851 43676074 -100110381 + L1PA16 LINE L1 4937 6164 -2 930 94 8 0 chr12 43676118 43676246 -100110209 - L1PA10 LINE L1 -13 6155 6027 9970 130 16 7 chr12 43676361 43678012 -100108443 - L1PBa LINE L1 -5073 1790 126 207 191 0 79 chr12 43678239 43678302 -100108153 + T-rich Low_complexity Low_complexity 2 59 0 4011 212 105 40 chr12 43678894 43680130 -100106325 - L1M4 LINE L1 -3136 3246 2092 1409 171 84 7 chr12 43680130 43680261 -100106194 - AluJb SINE Alu -14 298 178 414 0 0 0 chr12 43680261 43680307 -100106148 + (ATG)n Simple_repeat Simple_repeat 2 47 0 1409 171 84 7 chr12 43680307 43680450 -100106005 - AluJb SINE Alu -134 178 3 4011 212 105 40 chr12 43680450 43680935 -100105520 - L1M4 LINE L1 -4290 2092 1640 1669 127 94 0 chr12 43680935 43680960 -100105495 - L1MA2 LINE L1 -4 6300 6279 387 0 0 0 chr12 43680960 43681003 -100105452 + (TA)n Simple_repeat Simple_repeat 1 43 0 1669 127 94 0 chr12 43681003 43681276 -100105179 - L1MA2 LINE L1 -25 6279 5974 4011 212 105 40 chr12 43681276 43681911 -100104544 - L1M4 LINE L1 -4742 1640 777 1987 109 25 21 chr12 43682580 43682884 -100103571 + AluSx SINE Alu 1 305 0 310 314 44 38 chr12 43682928 43683087 -100103368 + L1M4 LINE L1 2676 2835 -3311 1867 96 0 4 chr12 43683148 43683387 -100103068 + AluY SINE Alu 69 306 -5 283 233 17 35 chr12 43683454 43683570 -100102885 + L1M4 LINE L1 2908 3021 -3125 282 273 45 0 chr12 43683600 43683666 -100102789 + L2 LINE L2 3238 3306 -7 289 287 36 31 chr12 43683666 43683861 -100102594 + L1M4 LINE L1 3048 3243 -2903 660 134 0 0 chr12 43683875 43683972 -100102483 + AluSg/x SINE Alu 206 302 -10 203 196 118 0 chr12 43684664 43684715 -100101740 - L2 LINE L2 0 3313 3257 1875 140 45 34 chr12 43684886 43685243 -100101212 - MER46B DNA MER2_type 0 236 1 339 85 0 0 chr12 43685331 43685378 -100101077 + (CA)n Simple_repeat Simple_repeat 2 48 0 1585 198 65 55 chr12 43685719 43685753 -100100702 - Charlie1b DNA MER1_type -2260 501 469 2030 127 7 3 chr12 43685753 43686045 -100100410 + AluSx SINE Alu 1 293 -19 1585 198 65 55 chr12 43686045 43686501 -100099954 - Charlie1b DNA MER1_type -2292 469 6 2141 113 14 3 chr12 43686643 43686936 -100099519 - AluSq SINE Alu -17 296 1 398 328 0 52 chr12 43687168 43687218 -100099237 - MIR SINE MIR -62 146 95 2909 133 79 4 chr12 43687218 43687738 -100098717 - MER89 LTR ERV1 0 559 1 398 328 0 52 chr12 43687738 43687821 -100098634 - MIR SINE MIR -113 95 20 184 375 31 0 chr12 43688727 43688791 -100097664 + MIR SINE MIR 30 95 -113 245 250 68 57 chr12 43688860 43689036 -100097419 - MER20B DNA MER1_type -604 179 2 273 235 0 98 chr12 43689361 43689463 -100096992 - MER77 LTR ERV1 -237 368 277 * 374 250 113 50 chr12 43689430 43689590 -100096865 - MER21B LTR ERV1 -553 310 141 387 227 0 62 chr12 43689621 43689749 -100096706 - MER77 LTR ERV1 -409 196 77 386 300 261 13 chr12 43690012 43690586 -100095869 - L2 LINE L2 -129 3184 2464 995 248 104 74 chr12 43690733 43690971 -100095484 - L1MC5 LINE L1 -51 7910 7680 1681 177 13 13 chr12 43690971 43691270 -100095185 + AluJo SINE Alu 1 299 -13 995 248 104 74 chr12 43691270 43691745 -100094710 - L1MC5 LINE L1 -281 7680 7176 2927 243 113 27 chr12 43692294 43693706 -100092749 + HAL1 LINE L1 975 2507 0 567 315 71 10 chr12 43693825 43694022 -100092433 + L3 LINE CR1 1348 1556 -21 2289 134 51 23 chr12 43694876 43695310 -100091145 - Tigger2 DNA MER2_type 0 2718 2273 413 143 0 14 chr12 43695300 43695370 -100091085 - Tigger2 DNA MER2_type -2649 69 1 * 25 75 0 0 chr12 43697204 43697257 -100089198 + AT_rich Low_complexity Low_complexity 1 53 0 2115 98 0 57 chr12 43697309 43697624 -100088831 - AluSx SINE Alu -15 297 1 1530 184 67 8 chr12 43697747 43698014 -100088441 - AluJo SINE Alu -29 283 1 25 0 0 0 chr12 43699167 43699192 -100087263 + AT_rich Low_complexity Low_complexity 1 25 0 1477 151 128 4 chr12 43700321 43700579 -100085876 - AluJo SINE Alu -12 290 1 913 273 72 14 chr12 43700581 43700940 -100085515 - L1ME3A LINE L1 -288 5865 5486 1252 117 112 0 chr12 43700952 43701149 -100085306 - AluSg/x SINE Alu -9 303 85 302 267 0 0 chr12 43701160 43701274 -100085181 - L1ME3A LINE L1 -688 5465 5352 1419 270 220 52 chr12 43701405 43702615 -100083840 - L2 LINE L2 -290 3023 1615 818 195 130 5 chr12 43702811 43702996 -100083459 + MER6B DNA MER2_type 2 209 -1 336 306 61 13 chr12 43703047 43703276 -100083179 - L1ME3A LINE L1 -2409 3720 3481 384 318 87 34 chr12 43703290 43703549 -100082906 - L1M4c LINE L1 -919 1824 1345 615 249 88 68 chr12 43703575 43704074 -100082381 - L1ME3A LINE L1 -5011 1108 600 2228 127 7 0 chr12 43704273 43704581 -100081874 + AluSx SINE Alu 1 310 -2 323 301 60 60 chr12 43704958 43705157 -100081298 + MLT1J LTR MaLR 97 295 -216 230 267 93 0 chr12 43705278 43705353 -100081102 + MLT1J LTR MaLR 424 505 -6 2017 145 3 0 chr12 43706036 43706332 -100080123 + AluSx SINE Alu 2 298 -14 25 0 0 0 chr12 43706578 43706603 -100079852 + AT_rich Low_complexity Low_complexity 1 25 0 1917 113 23 46 chr12 43707874 43708176 -100078279 - AluSq SINE Alu -18 295 1 287 275 84 49 chr12 43708395 43708537 -100077918 - MIR SINE MIR -66 142 22 594 247 129 0 chr12 43710859 43711037 -100075418 - MER102a DNA MER1_type -11 319 119 1897 146 20 7 chr12 43711334 43711629 -100074826 + AluJb SINE Alu 1 299 -13 27 0 0 0 chr12 43711983 43712010 -100074445 + AT_rich Low_complexity Low_complexity 1 27 0 234 291 35 0 chr12 43712288 43712374 -100074081 + L2 LINE L2 1860 1948 -1366 230 286 119 0 chr12 43712886 43712970 -100073485 + L2 LINE L2 2261 2354 -960 349 335 67 32 chr12 43713075 43713545 -100072910 + L2 LINE L2 2526 3046 -226 339 200 176 0 chr12 43713578 43713663 -100072792 + L2 LINE L2 3158 3257 -15 258 105 0 0 chr12 43713663 43713701 -100072754 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 2055 148 0 0 chr12 43716336 43716639 -100069816 + AluSx SINE Alu 1 303 -9 519 258 288 13 chr12 43717378 43717739 -100068716 - L2 LINE L2 -136 3177 2709 240 248 183 22 chr12 43717734 43717871 -100068584 - MIR3 SINE MIR -35 173 15 * 266 277 43 21 chr12 43718559 43718653 -100067802 + MIR SINE MIR 136 231 -31 247 304 161 9 chr12 43718770 43718882 -100067573 - MER5A DNA MER1_type 0 189 61 201 314 129 16 chr12 43718772 43718896 -100067559 + MER5A DNA MER1_type 17 154 -35 * 237 217 0 0 chr12 43719304 43719350 -100067105 + MER5B DNA MER1_type 9 54 -124 206 289 0 0 chr12 43720161 43720213 -100066242 - L2 LINE L2 0 3272 3221 2223 99 10 0 chr12 43720471 43720765 -100065690 - AluSp SINE Alu -16 297 1 1034 200 78 30 chr12 43721700 43722010 -100064445 + MLT1D LTR MaLR 180 595 0 409 287 90 12 chr12 43722283 43722450 -100064005 + MIR SINE MIR 47 226 -36 511 198 99 8 chr12 43724797 43724918 -100061537 + L1MC2 LINE L1 6200 6331 -13 357 294 42 21 chr12 43725712 43725855 -100060600 + MIR SINE MIR 117 262 0 510 239 25 14 chr12 43726171 43726311 -100060144 - MIR SINE MIR -59 203 61 316 327 88 26 chr12 43726588 43726860 -100059595 + MLT1K LTR MaLR 2 290 -298 2253 98 3 0 chr12 43726899 43727205 -100059250 + AluSg SINE Alu 1 307 -3 371 277 113 72 chr12 43727629 43728141 -100058314 - L1ME4a LINE L1 -241 5880 5348 38429 87 14 8 chr12 43728404 43734517 -100051938 - L1PA6 LINE L1 -7 6147 3 2042 117 32 0 chr12 43734526 43734807 -100051648 - AluSx SINE Alu -22 290 1 23 54 0 0 chr12 43734807 43734844 -100051611 + AT_rich Low_complexity Low_complexity 1 37 0 2021 131 10 0 chr12 43735255 43735553 -100050902 - AluSx SINE Alu -11 301 1 740 254 96 21 chr12 43736513 43736753 -100049702 - MIR SINE MIR 0 262 5 309 297 44 11 chr12 43737160 43737251 -100049204 + MIR3 SINE MIR 115 208 0 180 255 21 0 chr12 43737525 43737572 -100048883 + L2 LINE L2 3251 3298 -15 810 202 22 34 chr12 43737867 43738045 -100048410 + MER5B DNA MER1_type 1 176 -2 2132 118 69 39 chr12 43738318 43738682 -100047773 - THE1C LTR MaLR 0 375 1 299 289 127 86 chr12 43739271 43739690 -100046765 - L2 LINE L2 -13 3259 2824 273 338 92 38 chr12 43739859 43740180 -100046275 - L2 LINE L2 -807 2507 2162 312 225 156 56 chr12 43740180 43740303 -100046152 + MER5B DNA MER1_type 3 147 -31 222 62 0 0 chr12 43740303 43740335 -100046120 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 312 225 156 56 chr12 43740335 43740371 -100046084 + MER5B DNA MER1_type 147 178 0 273 338 92 38 chr12 43740371 43740419 -100046036 - L2 LINE L2 -1152 2162 2118 219 285 171 44 chr12 43741088 43741316 -100045139 + L2 LINE L2 3056 3312 -1 14840 125 46 8 chr12 43741478 43743789 -100042666 + Tigger1 DNA MER2_type 20 2418 0 263 300 22 0 chr12 43744345 43744435 -100042020 + MIR SINE MIR 64 155 -107 2056 120 25 0 chr12 43745417 43745701 -100040754 - AluSx SINE Alu -21 291 1 777 234 125 76 chr12 43747714 43748137 -100038318 + MLT1H LTR MaLR 104 547 -2 43488 35 24 1 chr12 43749527 43755546 -100030909 - L1PA3 LINE L1 0 6155 1 370 250 16 48 chr12 43757401 43757525 -100028930 + MIR SINE MIR 59 178 -84 1075 164 55 0 chr12 43758093 43758276 -100028179 + MER46A DNA MER2_type 44 236 0 22 35 0 0 chr12 43758717 43758746 -100027709 + AT_rich Low_complexity Low_complexity 1 29 0 787 266 75 76 chr12 43758748 43759111 -100027344 + L1M4 LINE L1 3918 4282 -1864 2287 99 0 0 chr12 43759111 43759419 -100027036 + AluSx SINE Alu 1 308 0 787 266 75 76 chr12 43759419 43759723 -100026732 + L1M4 LINE L1 4282 4585 -1561 429 282 95 28 chr12 43759789 43760286 -100026169 + L1M4 LINE L1 4789 5318 -828 5210 226 76 59 chr12 43760419 43762414 -100024041 + L1MB7 LINE L1 16 1974 -4672 2304 122 30 25 chr12 43762414 43762776 -100023679 - THE1B LTR MaLR 0 364 1 5210 226 76 59 chr12 43762776 43762808 -100023647 + L1MB7 LINE L1 1974 2004 -4642 2154 112 0 7 chr12 43762808 43763111 -100023344 - AluSg SINE Alu -9 301 1 1188 177 73 5 chr12 43763111 43763331 -100023124 + MER46A DNA MER2_type 1 235 -1 5210 226 76 59 chr12 43763331 43763917 -100022538 + L1MB7 LINE L1 2003 2703 -3943 4922 218 71 19 chr12 43763890 43765342 -100021113 + L1MB7 LINE L1 3630 5156 -1488 * 2287 152 126 10 chr12 43766075 43766576 -100019879 - MER89 LTR ERV1 0 559 1 22 56 0 0 chr12 43767143 43767179 -100019276 + AT_rich Low_complexity Low_complexity 1 36 0 1684 163 48 56 chr12 43770803 43771195 -100015260 - MLT1B LTR MaLR -1 389 1 2202 99 0 7 chr12 43771217 43771509 -100014946 + AluSx SINE Alu 1 290 -22 398 245 95 41 chr12 43771779 43771926 -100014529 - L1MC4a LINE L1 -1952 5856 5702 2084 134 3 0 chr12 43771950 43772255 -100014200 + AluSx SINE Alu 3 308 0 18711 55 14 9 chr12 43774775 43777328 -100009127 - L1P LINE L1 -842 5304 2740 4199 188 77 10 chr12 43777614 43778142 -100008313 + L1MB7 LINE L1 5153 5644 -1038 1279 203 79 48 chr12 43778142 43778496 -100007959 + MLT1A1 LTR MaLR 1 365 0 4199 188 77 10 chr12 43778496 43779359 -100007096 + L1MB7 LINE L1 5644 6641 -41 512 95 21 56 chr12 43779414 43779499 -100006956 + L1MB7 LINE L1 5921 6007 -177 302 203 0 0 chr12 43779499 43779573 -100006882 + L1MB7 LINE L1 6111 6184 0 512 95 21 56 chr12 43779573 43779585 -100006870 + L1MB7 LINE L1 6007 6184 0 2243 77 3 13 chr12 43779586 43779884 -100006571 + AluSx SINE Alu 3 297 -15 25 75 0 0 chr12 43779936 43779989 -100006466 + AT_rich Low_complexity Low_complexity 1 53 0 437 143 0 14 chr12 43781824 43781894 -100004561 + Tigger2 DNA MER2_type 1 69 -2649 * 2441 134 51 23 chr12 43781884 43782318 -100004137 + Tigger2 DNA MER2_type 2273 2718 0 566 315 71 10 chr12 43783172 43783369 -100003086 - L3 LINE CR1 -21 1556 1348 3295 251 108 28 chr12 43783488 43784989 -100001466 - HAL1 LINE L1 0 2507 887 1190 253 100 76 chr12 43785352 43785924 -100000531 + L1MC5 LINE L1 7081 7679 -282 1650 177 13 13 chr12 43785924 43786223 -100000232 - AluJo SINE Alu -13 299 1 1190 253 100 76 chr12 43786223 43786461 -99999994 + L1MC5 LINE L1 7679 7910 -51 381 299 261 13 chr12 43786608 43787182 -99999273 + L2 LINE L2 2464 3184 -129 420 230 1 61 chr12 43787431 43787569 -99998886 + MER77 LTR ERV1 25 196 -409 463 238 115 70 chr12 43787600 43787840 -99998615 + MER21B LTR ERV1 141 379 -226 297 250 68 57 chr12 43788154 43788330 -99998125 + MER20B DNA MER1_type 2 179 -604 756 254 78 20 chr12 43789540 43789784 -99996671 - MIR SINE MIR -3 259 2 197 254 36 0 chr12 43789859 43789914 -99996541 - L2 LINE L2 -64 3249 3193 271 240 88 32 chr12 43791013 43791138 -99995317 + L1ME4a LINE L1 5770 5901 -220 1742 167 48 58 chr12 43792474 43792869 -99993586 + MSTD LTR MaLR 1 391 -5 468 332 37 16 chr12 43792871 43793061 -99993394 + MIR SINE MIR 26 219 -43 217 263 18 0 chr12 43793492 43793549 -99992906 - MIR SINE MIR -21 241 184 1593 138 232 9 chr12 43793985 43794334 -99992121 + MSTA LTR MaLR 2 428 0 261 284 15 0 chr12 43794375 43794442 -99992013 - L2 LINE L2 0 3272 3205 738 277 119 45 chr12 43794566 43795079 -99991376 + LTR67 LTR ERVL 3 553 -4 249 321 24 0 chr12 43795896 43795980 -99990475 + L2 LINE L2 3186 3271 -1 548 293 103 17 chr12 43796525 43796757 -99989698 + MIR SINE MIR 9 260 -2 594 255 143 31 chr12 43797193 43797452 -99989003 - L1MC4a LINE L1 -1973 5835 5548 262 208 38 0 chr12 43797961 43798014 -99988441 + L2 LINE L2 3218 3272 0 473 252 27 41 chr12 43799302 43799449 -99987006 - MER5A DNA MER1_type -1 188 44 25 31 0 0 chr12 43800749 43800781 -99985674 + AT_rich Low_complexity Low_complexity 1 32 0 1460 136 87 19 chr12 43800785 43801094 -99985361 - L1MA8 LINE L1 -42 6249 5920 4034 114 102 40 chr12 43801124 43802229 -99984226 - Tigger3b DNA MER2_type 0 1232 3 849 298 62 11 chr12 43802370 43802803 -99983652 + L1M4 LINE L1 3838 4292 -1854 1178 168 103 0 chr12 43802945 43803159 -99983296 - MER46A DNA MER2_type 0 236 1 21 36 0 0 chr12 43803589 43803617 -99982838 + AT_rich Low_complexity Low_complexity 1 28 0 1043 255 220 28 chr12 43803914 43804424 -99982031 + MLT1L LTR MaLR 1 608 -7 483 212 73 0 chr12 43805559 43805696 -99980759 - MER104 DNA Tc2 -4 176 30 537 301 77 61 chr12 43805769 43806095 -99980360 + MLT1J1 LTR MaLR 109 439 -7 198 0 0 0 chr12 43806334 43806356 -99980099 + (TG)n Simple_repeat Simple_repeat 1 22 0 242 54 0 27 chr12 43806356 43806393 -99980062 + (GA)n Simple_repeat Simple_repeat 2 37 0 329 297 149 36 chr12 43806679 43806901 -99979554 + MIR SINE MIR 16 262 0 21 0 0 0 chr12 43808895 43808916 -99977539 + AT_rich Low_complexity Low_complexity 1 21 0 258 240 82 41 chr12 43810820 43810966 -99975489 - L1ME4a LINE L1 0 6121 5970 472 276 108 22 chr12 43811095 43811363 -99975092 - L1ME4a LINE L1 -331 5790 5500 2408 74 17 0 chr12 43814434 43814731 -99971724 + AluSp SINE Alu 1 302 -11 576 283 48 39 chr12 43814894 43815124 -99971331 + MIR SINE MIR 20 251 -11 254 322 51 34 chr12 43816215 43816451 -99970004 + L2 LINE L2 2834 3073 -199 4609 192 44 10 chr12 43816517 43817579 -99968876 + Charlie1a DNA MER1_type 56 1153 -302 24727 40 2 1 chr12 43817581 43821530 -99964925 + L1PA5 LINE L1 2184 6139 -15 207 69 0 0 chr12 43821530 43821559 -99964896 + (TA)n Simple_repeat Simple_repeat 2 30 0 540 150 223 62 chr12 43821562 43821835 -99964620 + Charlie1a DNA MER1_type 1138 1454 -1 289 323 111 51 chr12 43822188 43822522 -99963933 + L2 LINE L2 2918 3271 -1 367 320 193 34 chr12 43822601 43823186 -99963269 - L2 LINE L2 -582 2732 2055 761 222 56 10 chr12 43823373 43823571 -99962884 - MER3 DNA MER1_type -2 207 1 875 147 38 38 chr12 43823778 43823962 -99962493 + MLT2C1 LTR ERVL 1 184 -213 311 278 11 11 chr12 43824115 43824205 -99962250 + L1MC4 LINE L1 6614 6703 -1339 748 152 36 0 chr12 43824208 43824320 -99962135 - AluJo SINE Alu -176 136 21 322 359 72 18 chr12 43824348 43824515 -99961940 + MER5B DNA MER1_type 1 176 -2 315 234 101 55 chr12 43825276 43825437 -99961018 - MIR3 SINE MIR -67 141 12 412 345 151 19 chr12 43827129 43827448 -99959007 - L3 LINE CR1 -416 1161 801 526 323 127 23 chr12 43827450 43827797 -99958658 - L3 LINE CR1 -983 594 212 500 338 134 44 chr12 43829181 43829994 -99956461 + L2 LINE L2 421 1306 -2008 4719 255 124 27 chr12 43829998 43830620 -99955835 + L2 LINE L2 1122 1683 -1630 201 39 0 0 chr12 43830620 43830646 -99955809 + (CA)n Simple_repeat Simple_repeat 2 27 0 4719 255 124 27 chr12 43830646 43831966 -99954489 + L2 LINE L2 1683 3265 -48 1879 142 0 75 chr12 43837025 43837357 -99949098 - AluJo SINE Alu -5 307 1 1383 144 69 3 chr12 43837365 43837656 -99948799 - MER33 DNA MER1_type -8 316 7 230 250 42 0 chr12 43838039 43838111 -99948344 + L1MC5 LINE L1 7502 7576 -385 1646 176 34 20 chr12 43838189 43838484 -99947971 + AluJb SINE Alu 1 299 -13 2152 123 7 10 chr12 43838786 43839096 -99947359 - AluSg SINE Alu -1 309 1 298 293 89 75 chr12 43841511 43841691 -99944764 + MIR SINE MIR 11 191 -71 1643 139 19 12 chr12 43842558 43842816 -99943639 + AluSx SINE Alu 53 312 0 1817 137 7 27 chr12 43842826 43843125 -99943330 + AluSx SINE Alu 20 312 0 330 326 87 37 chr12 43843502 43843744 -99942711 + MIR SINE MIR 8 261 -1 25 0 0 0 chr12 43843847 43843872 -99942583 + AT_rich Low_complexity Low_complexity 1 25 0 212 356 35 9 chr12 43844393 43844508 -99941947 + L2 LINE L2 2368 2485 -829 2217 64 10 73 chr12 43844784 43845097 -99941358 + AluY SINE Alu 1 293 -18 445 306 40 8 chr12 43845311 43845435 -99941020 + L2 LINE L2 3127 3254 -18 3961 178 40 38 chr12 43846172 43847297 -99939158 - L1MB4 LINE L1 -3 6177 5049 1422 66 0 0 chr12 43847297 43847464 -99938991 - AluSp SINE Alu -7 306 140 1520 210 50 9 chr12 43847472 43847895 -99938560 - L1MB4 LINE L1 -1088 5058 4619 806 210 30 99 chr12 43848409 43848771 -99937684 - MER46C DNA MER2_type -1 337 1 259 273 13 0 chr12 43849129 43849206 -99937249 + L1MB3 LINE L1 5539 5616 -505 1941 128 31 7 chr12 43849206 43849496 -99936959 + AluSx SINE Alu 1 297 -15 28 0 0 0 chr12 43849497 43849525 -99936930 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr12 43849610 43849631 -99936824 + AT_rich Low_complexity Low_complexity 1 21 0 1601 71 13 22 chr12 43849703 43849927 -99936528 + AluY SINE Alu 88 309 -2 2533 124 92 34 chr12 43849941 43850442 -99936013 + L1MB3 LINE L1 5643 6172 -11 456 280 74 53 chr12 43850882 43851125 -99935330 + L2 LINE L2 2322 2569 -745 692 282 58 54 chr12 43851138 43851397 -99935058 - MIR SINE MIR -1 261 2 452 264 206 32 chr12 43851412 43851689 -99934766 + L2 LINE L2 2987 3311 -2 721 298 44 18 chr12 43851715 43851943 -99934512 + MIR SINE MIR 26 259 -3 631 175 10 0 chr12 43852386 43852489 -99933966 + FLAM_A SINE Alu 19 122 -20 2226 74 47 3 chr12 43852909 43853205 -99933250 - AluSc SINE Alu 0 309 1 2907 140 81 41 chr12 43854109 43854737 -99931718 + MER39B LTR ERV1 1 653 0 229 308 116 55 chr12 43854757 43854903 -99931552 - L2 LINE L2 -654 2660 2506 254 312 26 0 chr12 43855121 43855198 -99931257 - L2 LINE L2 0 3313 3235 338 226 97 77 chr12 43855763 43855918 -99930537 + L1ME4a LINE L1 5963 6120 -1 1112 308 136 32 chr12 43856054 43856870 -99929585 + L2 LINE L2 1858 2758 -556 2267 169 44 5 chr12 43856927 43857335 -99929120 + MSTB LTR MaLR 1 424 -2 339 294 42 25 chr12 43857382 43857501 -99928954 + L2 LINE L2 3193 3313 0 180 111 0 0 chr12 43857584 43857611 -99928844 + (CA)n Simple_repeat Simple_repeat 1 27 0 241 262 41 8 chr12 43857722 43857844 -99928611 + (TA)n Simple_repeat Simple_repeat 2 127 0 219 319 160 0 chr12 43858908 43859027 -99927428 - MIR3 SINE MIR -31 177 40 4545 245 133 67 chr12 43859179 43860410 -99926045 + HAL1 LINE L1 10 1158 -1349 1498 161 20 31 chr12 43860410 43860702 -99925753 + AluJo SINE Alu 1 289 -23 4545 245 133 67 chr12 43860702 43861813 -99924642 + HAL1 LINE L1 1158 2507 0 577 299 128 31 chr12 43861892 43862313 -99924142 - L2 LINE L2 -28 3285 2824 1084 289 146 48 chr12 43862354 43863159 -99923296 - L2 LINE L2 -657 2657 1758 2325 101 3 0 chr12 43863159 43863467 -99922988 + AluSg SINE Alu 1 309 -1 1084 289 146 48 chr12 43863467 43863536 -99922919 - L2 LINE L2 -1556 1758 1697 1397 293 166 14 chr12 43863614 43864704 -99921751 - L2 LINE L2 -98 3215 1959 669 157 0 19 chr12 43865083 43865191 -99921264 - MIR SINE MIR -110 152 47 445 113 183 26 chr12 43865322 43865364 -99921091 - L1MA9 LINE L1 0 6312 6271 3551 152 37 13 chr12 43865364 43866019 -99920436 - L1MA9 LINE L1 -44 6122 5485 183 80 0 0 chr12 43866455 43866480 -99919975 + (A)n Simple_repeat Simple_repeat 1 25 0 385 155 42 0 chr12 43867192 43867263 -99919192 - MADE1 DNA Mariner -1 79 6 1619 128 128 8 chr12 43867647 43867905 -99918550 + AluSg1 SINE Alu 1 289 -20 234 308 0 0 chr12 43868316 43868381 -99918074 + MIR SINE MIR 87 151 -57 445 257 138 20 chr12 43868396 43868548 -99917907 + MER5B DNA MER1_type 9 178 0 696 214 54 6 chr12 43868586 43868754 -99917701 + MER5B DNA MER1_type 3 178 0 2085 134 3 0 chr12 43870121 43870426 -99916029 - AluSx SINE Alu 0 308 3 422 245 95 41 chr12 43870450 43870597 -99915858 + L1MC4a LINE L1 5702 5856 -1952 2207 99 0 7 chr12 43870867 43871159 -99915296 - AluSx SINE Alu -22 290 1 1954 151 51 54 chr12 43871181 43871572 -99914883 + MLT1B LTR MaLR 1 390 0 342 0 0 0 chr12 43871823 43871861 -99914594 + (CA)n Simple_repeat Simple_repeat 2 39 0 1219 173 5 5 chr12 43871864 43872066 -99914389 - AluJo SINE Alu -24 288 87 22 88 0 0 chr12 43872319 43872376 -99914079 + AT_rich Low_complexity Low_complexity 1 57 0 215 119 48 24 chr12 43872724 43872766 -99913689 + L2 LINE L2 3241 3283 -30 408 279 57 14 chr12 43873058 43873198 -99913257 + MIR SINE MIR 117 262 0 226 356 0 50 chr12 43874537 43874697 -99911758 + MIR3 SINE MIR 38 189 -19 1295 197 48 48 chr12 43875155 43875450 -99911005 + AluJo SINE Alu 1 295 -17 521 232 165 75 chr12 43875775 43875923 -99910532 + L1ME4a LINE L1 5698 5831 -290 951 69 14 62 chr12 43875923 43875943 -99910512 + L1MB4 LINE L1 6042 6061 -119 2448 66 3 3 chr12 43875943 43876245 -99910210 + AluSp SINE Alu 1 302 -11 951 69 14 62 chr12 43876245 43876368 -99910087 + L1MB4 LINE L1 6061 6178 -2 521 232 165 75 chr12 43876368 43876607 -99909848 + L1ME4a LINE L1 5831 6120 -1 1488 184 39 23 chr12 43877549 43877673 -99908782 + AluJo SINE Alu 3 123 -189 218 0 95 0 chr12 43877673 43877715 -99908740 + A-rich Low_complexity Low_complexity 2 47 0 1488 184 39 23 chr12 43877715 43877895 -99908560 + AluJo SINE Alu 123 312 0 227 252 19 58 chr12 43879238 43879341 -99907114 - Charlie4 DNA MER1_type -4 1957 1859 196 343 41 0 chr12 43879839 43879912 -99906543 - L2 LINE L2 -90 3182 3107 226 274 147 100 chr12 43880405 43880595 -99905860 - MIR SINE MIR -17 245 47 22 70 0 0 chr12 43881855 43881898 -99904557 + AT_rich Low_complexity Low_complexity 1 43 0 2052 108 7 16 chr12 43882543 43882848 -99903607 + AluSx SINE Alu 1 302 -10 1494 83 39 15 chr12 43883159 43883364 -99903091 - AluSc SINE Alu -16 293 84 2364 84 0 0 chr12 43884492 43884776 -99901679 - AluSc SINE Alu -21 288 5 271 221 39 39 chr12 43884893 43884970 -99901485 - MIR3 SINE MIR -9 199 123 1151 262 172 11 chr12 43886919 43887362 -99899093 + MLT1H1 LTR MaLR 36 549 -6 516 291 88 0 chr12 43887369 43887517 -99898938 - MIR3 SINE MIR -28 180 20 816 181 57 28 chr12 43887570 43887747 -99898708 - AluJb SINE Alu -1 311 130 671 193 64 0 chr12 43887776 43887885 -99898570 + FLAM_A SINE Alu 1 116 -17 180 0 0 0 chr12 43887885 43887905 -99898550 + (T)n Simple_repeat Simple_repeat 1 20 0 1641 178 0 32 chr12 43887964 43888273 -99898182 + AluJo SINE Alu 1 299 -13 213 235 76 50 chr12 43889541 43889660 -99896795 - MIR SINE MIR -46 216 95 1955 128 49 0 chr12 43889950 43890238 -99896217 + AluSg SINE Alu 2 303 -7 219 265 206 0 chr12 43890372 43890440 -99896015 + MIR SINE MIR 111 192 -70 1494 193 50 63 chr12 43890753 43891132 -99895323 + MLT1A2 LTR MaLR 1 374 0 512 307 62 0 chr12 43891164 43891343 -99895112 + MIR SINE MIR 46 235 -27 2237 86 21 3 chr12 43891441 43891732 -99894723 + AluSx SINE Alu 2 297 -15 1205 126 0 0 chr12 43891733 43891907 -99894548 + AluSg/x SINE Alu 132 305 -7 283 318 56 24 chr12 43892942 43893068 -99893387 - MIR SINE MIR -101 161 32 29 47 0 0 chr12 43893296 43893339 -99893116 + AT_rich Low_complexity Low_complexity 1 43 0 2289 106 0 7 chr12 43894817 43895120 -99891335 + AluSq SINE Alu 1 301 -12 1830 161 0 14 chr12 43895342 43895634 -99890821 - AluJo SINE Alu -24 288 1 38135 87 12 15 chr12 43895961 43900216 -99886239 + L1PA6 LINE L1 11 4241 -1913 2371 103 0 0 chr12 43900216 43900527 -99885928 + AluSx SINE Alu 1 311 -1 38135 87 12 15 chr12 43900527 43902431 -99884024 + L1PA6 LINE L1 4241 6149 -5 794 212 149 40 chr12 43904723 43905025 -99881430 + L1ME2 LINE L1 5826 6160 -4 467 384 14 0 chr12 43906283 43906429 -99880026 + L2 LINE L2 3125 3272 0 1462 162 4 0 chr12 43907544 43907772 -99878683 - AluJb SINE Alu -14 298 70 204 135 67 34 chr12 43908170 43908259 -99878196 + (TTATA)n Simple_repeat Simple_repeat 3 94 0 186 224 30 45 chr12 43908288 43908355 -99878100 - MIR SINE MIR -111 151 86 275 317 231 0 chr12 43908419 43908523 -99877932 - L2 LINE L2 -8 3264 3137 360 308 50 68 chr12 43908662 43908883 -99877572 - MIR SINE MIR -15 247 31 2441 77 0 10 chr12 43908979 43909291 -99877164 + AluSc SINE Alu 1 309 0 1410 166 25 65 chr12 43910228 43910553 -99875902 + AluJo SINE Alu 1 312 0 2156 83 0 7 chr12 43911411 43911687 -99874768 + AluSx SINE Alu 35 308 -4 21 36 0 0 chr12 43911689 43911717 -99874738 + AT_rich Low_complexity Low_complexity 1 28 0 34 0 0 0 chr12 43911793 43911827 -99874628 + AT_rich Low_complexity Low_complexity 1 34 0 2194 85 0 3 chr12 43912890 43913172 -99873283 + AluY SINE Alu 13 293 -18 191 309 0 44 chr12 43913197 43913265 -99873190 - L2 LINE L2 -20 3252 3188 1599 197 24 0 chr12 43913464 43913758 -99872697 - AluJo SINE Alu -11 301 1 193 164 18 18 chr12 43914238 43914293 -99872162 + (TA)n Simple_repeat Simple_repeat 1 55 0 324 248 137 26 chr12 43914768 43914885 -99871570 - L2 LINE L2 0 3313 3184 3629 160 68 120 chr12 43915196 43916152 -99870303 - MER21A LTR ERV1 -25 906 1 2020 98 19 0 chr12 43916210 43916475 -99869980 + AluSq SINE Alu 1 270 -43 2245 99 3 3 chr12 43916486 43916789 -99869666 + AluY SINE Alu 1 303 -8 347 367 17 17 chr12 43917033 43917213 -99869242 + L2 LINE L2 2654 2833 -481 1587 210 26 23 chr12 43917384 43917732 -99868723 - MER21B LTR ERV1 -4 859 511 * 1918 173 13 6 chr12 43917731 43918043 -99868412 - MER21B LTR ERV1 -549 314 1 1735 162 19 32 chr12 43919023 43919338 -99867117 + AluJb SINE Alu 1 311 -1 869 197 13 13 chr12 43919563 43919715 -99866740 + FRAM SINE Alu 1 152 -24 1041 170 27 5 chr12 43920094 43920282 -99866173 + AluJb SINE Alu 119 310 -2 763 191 0 35 chr12 43923739 43923880 -99862575 - AluJo SINE Alu -138 174 39 668 299 109 0 chr12 43924230 43924451 -99862004 - MIR SINE MIR -5 257 13 2421 67 0 0 chr12 43924568 43924867 -99861588 - AluY SINE Alu -12 299 1 209 327 115 0 chr12 43925372 43925485 -99860970 + L2 LINE L2 2094 2219 -1095 434 250 0 11 chr12 43925492 43925584 -99860871 + MER45 DNA AcHobo 1 91 -862 3303 55 33 0 chr12 43925585 43925984 -99860471 + L1PA10 LINE L1 5744 6155 -13 7276 171 18 32 chr12 43926026 43927478 -99858977 - L1PA16 LINE L1 0 6166 4694 430 31 31 0 chr12 43927478 43927542 -99858913 + (TTTTA)n Simple_repeat Simple_repeat 3 68 0 2173 113 0 0 chr12 43927545 43927828 -99858627 - AluSx SINE Alu -29 283 1 7276 171 18 32 chr12 43927828 43928198 -99858257 - L1PA16 LINE L1 -1474 4692 4318 1922 151 10 10 chr12 43928198 43928509 -99857946 - AluJb SINE Alu -1 311 1 7276 171 18 32 chr12 43928509 43929136 -99857319 - L1PA16 LINE L1 -1848 4318 3756 896 217 157 23 chr12 43929151 43929451 -99857004 - MLT1F LTR MaLR -202 340 1 1971 123 4 0 chr12 43929535 43929812 -99856643 + AluSx SINE Alu 26 303 -9 1265 272 73 27 chr12 43929816 43930223 -99856232 - L2 LINE L2 -14 3299 2861 1697 221 52 29 chr12 43930223 43930448 -99856007 - MSTD LTR MaLR 0 396 157 1835 122 47 4 chr12 43930448 43930726 -99855729 + AluSg SINE Alu 1 290 -20 1697 221 52 29 chr12 43930726 43930885 -99855570 - MSTD LTR MaLR -239 157 3 1265 272 73 27 chr12 43930885 43931162 -99855293 - L2 LINE L2 -452 2861 2598 2297 108 0 0 chr12 43931163 43931458 -99854997 + AluSx SINE Alu 1 295 -17 183 80 0 0 chr12 43931527 43931552 -99854903 + (TA)n Simple_repeat Simple_repeat 2 26 0 328 231 28 65 chr12 43931560 43931668 -99854787 + L1MC4 LINE L1 6600 6703 -1339 593 73 6 79 chr12 43931668 43931994 -99854461 + (TA)n Simple_repeat Simple_repeat 1 302 0 1444 233 107 101 chr12 43932000 43932630 -99853825 - L2 LINE L2 -734 2580 1942 2429 96 0 3 chr12 43932630 43932943 -99853512 - AluSq SINE Alu -1 312 1 1444 233 107 101 chr12 43932943 43933105 -99853350 - L2 LINE L2 -1372 1942 1783 1526 238 67 12 chr12 43933112 43933646 -99852809 + L2 LINE L2 2265 2789 -525 415 336 64 16 chr12 43933675 43933800 -99852655 + MER91A DNA MER1_type 1 131 -65 644 277 22 30 chr12 43933837 43934068 -99852387 + L2 LINE L2 3077 3305 -8 445 346 17 0 chr12 43934129 43934308 -99852147 - L2 LINE L2 -1668 1646 1465 687 259 185 62 chr12 43934310 43934942 -99851513 - L1MC4 LINE L1 -2 8040 7331 353 234 0 0 chr12 43934943 43935007 -99851448 - MIR SINE MIR -197 65 2 380 297 26 26 chr12 43935172 43935327 -99851128 - ERVL LTR ERVL -3116 2648 2494 2376 76 0 26 chr12 43936180 43936484 -99849971 + AluSc SINE Alu 1 296 -13 440 200 0 0 chr12 43936723 43936798 -99849657 + MER58 DNA MER1_type 2346 2420 0 1723 137 67 7 chr12 43937932 43938232 -99848223 - L1MB2 LINE L1 -2 6169 5852 1024 264 211 14 chr12 43938232 43938668 -99847787 - L2 LINE L2 -1880 1434 913 261 373 127 0 chr12 43938665 43938807 -99847648 + L2 LINE L2 2596 2755 -559 * 327 338 34 20 chr12 43938935 43939083 -99847372 + L2 LINE L2 2915 3064 -208 1353 178 139 8 chr12 43939274 43939411 -99847044 - AluJo SINE Alu -19 293 175 252 0 0 0 chr12 43939411 43939439 -99847016 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1353 178 139 8 chr12 43939439 43939560 -99846895 - AluJo SINE Alu -137 175 1 184 273 114 23 chr12 43939635 43939723 -99846732 + L2 LINE L2 1979 2074 -1240 25 0 0 0 chr12 43939758 43939783 -99846672 + AT_rich Low_complexity Low_complexity 1 25 0 318 114 0 0 chr12 43939783 43939827 -99846628 - Alu SINE Alu -258 44 1 1246 197 121 155 chr12 43940136 43940540 -99845915 + L1MD3 LINE L1 6525 6941 -1054 1021 138 0 52 chr12 43940540 43940714 -99845741 + AluJo SINE Alu 40 204 -108 1246 197 121 155 chr12 43940714 43941545 -99844910 + L1MD3 LINE L1 6941 7984 -11 488 298 272 21 chr12 43941624 43942003 -99844452 + L2 LINE L2 2819 3292 -21 2227 91 7 3 chr12 43942014 43942311 -99844144 + AluSp SINE Alu 1 298 -15 417 239 152 0 chr12 43942473 43942611 -99843844 - MER103 DNA DNA -7 159 1 2083 95 48 17 chr12 43942728 43943022 -99843433 - AluSx SINE Alu -9 303 1 1496 165 81 133 chr12 43943112 43943609 -99842846 - LTR45B LTR ERV1 0 489 19 2333 105 3 9 chr12 43944110 43944425 -99842030 + AluSp SINE Alu 1 313 0 2352 97 0 0 chr12 43944728 43945028 -99841427 - AluSc SINE Alu -9 300 1 23 54 0 0 chr12 43945596 43945633 -99840822 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr12 43945812 43945837 -99840618 + AT_rich Low_complexity Low_complexity 1 25 0 2461 85 0 19 chr12 43946583 43946902 -99839553 + AluSq SINE Alu 1 313 0 307 279 108 10 chr12 43946949 43947073 -99839382 + MIR SINE MIR 38 171 -78 350 245 167 0 chr12 43947110 43947212 -99839243 - L2 LINE L2 -6 3266 3148 235 198 12 81 chr12 43947214 43947300 -99839155 - MIR SINE MIR -10 252 173 395 172 0 0 chr12 43947370 43947434 -99839021 - L2 LINE L2 -5 3308 3245 334 200 133 29 chr12 43947502 43947607 -99838848 - MIR SINE MIR -70 192 77 630 284 59 77 chr12 43947614 43948097 -99838358 - MLT1J LTR MaLR -8 442 1 189 275 0 7 chr12 43948097 43948154 -99838301 - MIR SINE MIR -126 82 27 294 130 14 29 chr12 43948468 43948537 -99837918 + A-rich Low_complexity Low_complexity 3 70 0 711 149 0 0 chr12 43948537 43948658 -99837797 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 772 190 0 36 chr12 43948925 43949062 -99837393 - FLAM_A SINE Alu -1 132 1 839 108 0 0 chr12 43949461 43949572 -99836883 + AluJb SINE Alu 179 289 -23 2079 142 7 3 chr12 43949616 43949926 -99836529 - AluSx SINE Alu -1 311 1 1819 157 48 3 chr12 43950123 43950417 -99836038 - AluJo SINE Alu -5 307 1 263 345 22 61 chr12 43950652 43950881 -99835574 + L2 LINE L2 2469 2688 -626 410 336 16 0 chr12 43951072 43951197 -99835258 + L2 LINE L2 2550 2676 -638 322 64 0 218 chr12 43951197 43951221 -99835234 + HY5 scRNA scRNA 1 29 -55 2178 108 0 0 chr12 43951221 43951543 -99834912 - AluSx SINE Alu 0 326 5 322 64 0 218 chr12 43951543 43951595 -99834860 + HY5 scRNA scRNA 29 61 -23 989 251 94 79 chr12 43951684 43951864 -99834591 + MLT1H1 LTR MaLR 69 245 -310 1614 102 36 13 chr12 43951864 43952089 -99834366 - MER30 DNA MER1_type 0 230 1 989 251 94 79 chr12 43952089 43952387 -99834068 + MLT1H1 LTR MaLR 245 554 -1 307 176 14 54 chr12 43952413 43952487 -99833968 + L2 LINE L2 2783 2853 -461 1887 161 10 0 chr12 43952608 43952912 -99833543 - AluSx SINE Alu -2 310 4 188 287 51 57 chr12 43952932 43953089 -99833366 + L2 LINE L2 3079 3234 -79 869 195 7 0 chr12 43953093 43953247 -99833208 + MER69A DNA AcHobo 1 155 -22 1080 191 27 113 chr12 43953247 43953362 -99833093 - MER67B LTR ERV1 0 661 538 2108 125 3 0 chr12 43953362 43953658 -99832797 - AluSx SINE Alu -1 311 15 1080 191 27 113 chr12 43953658 43953877 -99832578 - MER67B LTR ERV1 -123 538 356 203 361 78 23 chr12 43953891 43954110 -99832345 + L2 LINE L2 2694 2924 -390 22 35 0 0 chr12 43954860 43954889 -99831566 + AT_rich Low_complexity Low_complexity 1 29 0 305 362 75 5 chr12 43955451 43955639 -99830816 + L3b LINE CR1 1286 1486 -97 2328 100 0 7 chr12 43956342 43956643 -99829812 + AluSx SINE Alu 1 299 -13 687 293 49 9 chr12 43956646 43956871 -99829584 + MIR SINE MIR 29 262 0 1937 125 10 42 chr12 43957746 43957890 -99828565 + AluSx SINE Alu 1 148 -164 2118 98 0 4 chr12 43957890 43958166 -99828289 + AluSc SINE Alu 27 301 -8 1937 125 10 42 chr12 43958166 43958334 -99828121 + AluSx SINE Alu 148 303 -9 2016 142 4 0 chr12 43958899 43959232 -99827223 - AluSx SINE Alu 0 334 1 4376 223 32 52 chr12 43959382 43959867 -99826588 - L1M4c LINE L1 -4223 2626 2133 2129 131 6 6 chr12 43959867 43960179 -99826276 - AluSx SINE Alu 0 312 1 4376 223 32 52 chr12 43960179 43961584 -99824871 - L1M4c LINE L1 -4716 2133 894 264 104 45 30 chr12 43961592 43961659 -99824796 + CT-rich Low_complexity Low_complexity 4 71 0 189 107 0 0 chr12 43962203 43962231 -99824224 + (T)n Simple_repeat Simple_repeat 1 28 0 4735 73 39 3 chr12 43962240 43962827 -99823628 - LTR14B LTR ERVK 0 608 1 239 388 0 0 chr12 43962827 43962925 -99823530 - L2 LINE L2 -17 3255 3158 22 56 0 0 chr12 43962964 43963000 -99823455 + AT_rich Low_complexity Low_complexity 1 36 0 2311 85 0 33 chr12 43963275 43963582 -99822873 - AluSc SINE Alu -12 297 1 352 256 79 61 chr12 43963802 43963966 -99822489 - L1M4c LINE L1 -5817 1032 866 251 93 56 0 chr12 43965563 43965617 -99820838 + A-rich Low_complexity Low_complexity 4 60 0 21 0 0 0 chr12 43965674 43965695 -99820760 + AT_rich Low_complexity Low_complexity 1 21 0 630 312 81 0 chr12 43966588 43966715 -99819740 - MIR SINE MIR -18 244 129 2305 94 16 0 chr12 43966715 43967022 -99819433 + AluSp SINE Alu 1 312 -1 630 312 81 0 chr12 43967022 43967115 -99819340 - MIR SINE MIR -133 129 6 199 255 191 21 chr12 43967923 43968017 -99818438 - MIR SINE MIR -81 127 18 328 102 0 0 chr12 43968527 43968576 -99817879 + FLAM SINE Alu 83 131 -2 2293 114 0 0 chr12 43968589 43968895 -99817560 + AluSx SINE Alu 1 306 -6 608 340 90 19 chr12 43970299 43970667 -99815788 - L3 LINE CR1 -69 1508 1115 187 363 101 22 chr12 43970727 43970906 -99815549 + L2 LINE L2 1686 1878 -1436 319 284 63 24 chr12 43970948 43971075 -99815380 + MIR SINE MIR 9 140 -122 1418 185 53 90 chr12 43971184 43971563 -99814892 - MLT1A1 LTR MaLR 0 365 1 969 159 104 0 chr12 43971567 43971730 -99814725 - MER5A DNA MER1_type -9 180 1 287 333 125 7 chr12 43971756 43971900 -99814555 + MER5A DNA MER1_type 26 186 -3 211 338 106 0 chr12 43971919 43972061 -99814394 + L2 LINE L2 1932 2088 -1226 912 252 102 58 chr12 43972121 43972514 -99813941 - MLT1J LTR MaLR 0 511 102 6647 225 58 9 chr12 43972540 43973982 -99812473 + L1PA13 LINE L1 1 1513 -6068 764 152 129 8 chr12 43973988 43974120 -99812335 - MER5A DNA MER1_type -41 148 1 212 316 151 29 chr12 43974146 43974285 -99812170 + MER5A DNA MER1_type 26 181 -8 307 281 12 81 chr12 43974310 43974470 -99811985 + L1PA13 LINE L1 1537 1685 -5896 5551 238 27 10 chr12 43974493 43976092 -99810363 + L1PA13 LINE L1 2471 4097 -3487 12794 165 19 13 chr12 43976095 43976289 -99810166 + L1PA13 LINE L1 4491 4682 -2919 2338 119 0 0 chr12 43976289 43976599 -99809856 + AluSx SINE Alu 1 310 -2 12794 165 19 13 chr12 43976599 43979176 -99807279 + L1PA13 LINE L1 4682 7227 -374 1472 195 119 7 chr12 43979176 43979479 -99806976 + MER1B DNA MER1_type 1 337 0 12794 165 19 13 chr12 43979479 43979851 -99806604 + L1PA13 LINE L1 7227 7595 -6 755 166 21 0 chr12 43979980 43980130 -99806325 - MLT1C LTR MaLR -3 464 226 2615 146 94 35 chr12 43980141 43984383 -99802072 - SATR1 Satellite Satellite -49 4489 1 354 245 133 10 chr12 43984672 43984770 -99801685 - L2 LINE L2 -3 3310 3201 8149 26 1 1 chr12 43984825 43986085 -99800370 + L1PA4 LINE L1 4892 6152 -3 1465 222 23 7 chr12 43986100 43986558 -99799897 - MER34 LTR ERV1 -49 493 1 577 265 22 22 chr12 43986595 43986731 -99799724 + L2 LINE L2 3137 3272 0 26 0 0 0 chr12 43986940 43986966 -99799489 + AT_rich Low_complexity Low_complexity 1 26 0 252 382 55 0 chr12 43987275 43987385 -99799070 + L2 LINE L2 3141 3256 -16 23 0 0 0 chr12 43987386 43987409 -99799046 + AT_rich Low_complexity Low_complexity 1 23 0 986 225 0 0 chr12 43987410 43987579 -99798876 - FAM SINE Alu -6 169 1 21 82 0 0 chr12 43987747 43987796 -99798659 + AT_rich Low_complexity Low_complexity 1 49 0 1560 187 17 10 chr12 43988311 43988600 -99797855 + AluJo SINE Alu 1 291 -21 405 235 15 37 chr12 43988894 43989030 -99797425 + L2 LINE L2 3041 3173 -140 908 287 127 36 chr12 43989032 43989503 -99796952 - LTR33 LTR ERVL 0 521 8 823 180 0 7 chr12 43989562 43989701 -99796754 - FRAM SINE Alu -18 158 21 253 311 22 0 chr12 43989701 43989791 -99796664 + L2 LINE L2 3222 3313 0 254 29 29 0 chr12 43989921 43989956 -99796499 + (TC)n Simple_repeat Simple_repeat 2 37 0 * 285 167 0 0 chr12 43989955 43990009 -99796446 + (TA)n Simple_repeat Simple_repeat 1 54 0 31 0 0 0 chr12 43990043 43990074 -99796381 + AT_rich Low_complexity Low_complexity 1 31 0 3515 128 12 2 chr12 43991013 43991505 -99794950 - LOR1a LTR ERV1 0 497 1 754 253 111 5 chr12 43991506 43991696 -99794759 + MLT1I LTR MaLR 200 409 0 626 92 20 0 chr12 43992581 43992679 -99793776 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 437 274 231 5 chr12 43992680 43992888 -99793567 + MIR SINE MIR 2 256 -6 1109 135 49 16 chr12 43993990 43994175 -99792280 + MLT1A1 LTR MaLR 1 191 -174 299 65 22 22 chr12 43994254 43994300 -99792155 - MLT1A1 LTR MaLR -319 46 1 972 171 23 17 chr12 43994492 43994667 -99791788 + MLT1A1 LTR MaLR 190 365 0 1610 219 9 23 chr12 43994700 43995047 -99791408 + MLT1A2 LTR MaLR 33 374 0 406 173 0 12 chr12 43995238 43995319 -99791136 - L1M4 LINE L1 -1446 4700 4621 1440 146 152 85 chr12 43995606 43995742 -99790713 + MER1B DNA MER1_type 1 127 -2583 2296 91 0 0 chr12 43995742 43996039 -99790416 + AluSx SINE Alu 6 302 -10 1440 146 152 85 chr12 43996039 43996218 -99790237 + MER1B DNA MER1_type 127 337 0 1805 172 52 20 chr12 43996378 43996730 -99789725 - MLT1A1 LTR MaLR 0 365 1 312 167 36 24 chr12 43996987 43997071 -99789384 - L1ME4a LINE L1 -258 5863 5779 319 321 126 51 chr12 43997274 43997753 -99788702 - L1M4 LINE L1 -2562 3584 3077 33 56 0 0 chr12 43997781 43997835 -99788620 + AT_rich Low_complexity Low_complexity 1 54 0 669 274 20 36 chr12 43997851 43998099 -99788356 - L2 LINE L2 0 3313 3070 249 289 44 22 chr12 43999198 43999288 -99787167 - L2 LINE L2 0 3272 3181 206 349 0 0 chr12 44000133 44000196 -99786259 - MIR SINE MIR -147 115 53 738 211 211 10 chr12 44000626 44000825 -99785630 - MER8 DNA MER2_type 0 239 1 2706 71 15 0 chr12 44000989 44001313 -99785142 - L1PA7 LINE L1 -3 6151 5823 29097 110 23 63 chr12 44001315 44006398 -99780057 - L1P LINE L1 -1258 4888 12 370 265 88 17 chr12 44006420 44006601 -99779854 - L1MC5 LINE L1 -49 7912 7719 204 364 64 29 chr12 44007135 44007275 -99779180 + L2 LINE L2 3112 3256 -16 370 245 21 0 chr12 44008148 44008242 -99778213 + L1M4 LINE L1 4906 5001 -1145 2130 128 0 38 chr12 44008449 44008768 -99777687 - AluSq SINE Alu -6 307 1 567 191 29 17 chr12 44008950 44009123 -99777332 + CT-rich Low_complexity Low_complexity 2 176 0 2534 54 0 13 chr12 44009117 44009457 -99776998 - AluY SINE Alu 0 336 1 531 118 89 126 chr12 44009499 44009634 -99776821 - FLAM_A SINE Alu -2 131 2 217 248 66 15 chr12 44009651 44009728 -99776727 + MIR SINE MIR 83 151 -57 416 288 7 28 chr12 44010196 44010382 -99776073 + MIR SINE MIR 21 196 -65 1135 234 45 48 chr12 44010901 44011319 -99775136 + L1MC4 LINE L1 7531 7947 -95 181 194 0 0 chr12 44011442 44011478 -99774977 - MIR SINE MIR -117 145 110 236 241 46 35 chr12 44011538 44011625 -99774830 - MIR SINE MIR -75 133 46 586 189 90 8 chr12 44012777 44012899 -99773556 - FLAM_A SINE Alu 0 133 2 321 323 146 43 chr12 44013346 44013746 -99772709 - L2 LINE L2 -198 3074 2602 246 305 168 11 chr12 44014171 44014266 -99772189 + L2 LINE L2 3141 3250 -22 34 42 0 0 chr12 44014750 44014798 -99771657 + AT_rich Low_complexity Low_complexity 1 48 0 2598 51 0 6 chr12 44014894 44015207 -99771248 - AluY SINE Alu 0 311 1 21 0 0 0 chr12 44015979 44016000 -99770455 + AT_rich Low_complexity Low_complexity 1 21 0 1429 71 0 0 chr12 44017920 44018090 -99768365 - AluSq SINE Alu -84 229 60 209 310 0 42 chr12 44018168 44018239 -99768216 + MIR SINE MIR 66 133 -129 194 0 0 37 chr12 44018340 44018367 -99768088 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2095 121 0 0 chr12 44018370 44018651 -99767804 - AluSq SINE Alu -32 281 1 563 323 42 47 chr12 44018724 44018771 -99767684 + L1MC/D LINE L1 4691 4737 -1820 404 95 0 158 chr12 44018771 44018866 -99767589 + MADE1 DNA Mariner 1 80 0 563 323 42 47 chr12 44018866 44019869 -99766586 + L1MC/D LINE L1 4737 5735 -822 2022 146 50 16 chr12 44019869 44020252 -99766203 + MSTD LTR MaLR 1 396 0 563 323 42 47 chr12 44020252 44020324 -99766131 + L1MC/D LINE L1 5735 5806 -751 2472 60 0 3 chr12 44020376 44020676 -99765779 + AluY SINE Alu 1 299 -12 25 0 0 0 chr12 44020733 44020758 -99765697 + AT_rich Low_complexity Low_complexity 1 25 0 787 153 8 0 chr12 44020776 44020894 -99765561 - 5S rRNA rRNA -1 120 2 275 203 13 0 chr12 44020948 44021027 -99765428 + (TG)n Simple_repeat Simple_repeat 1 80 0 1873 117 3 3 chr12 44021196 44021479 -99764976 - L1PB1 LINE L1 -5 6146 5864 198 0 0 0 chr12 44021488 44021510 -99764945 + (TA)n Simple_repeat Simple_repeat 2 23 0 2449 43 3 13 chr12 44021510 44021814 -99764641 - AluY SINE Alu -10 301 1 1909 156 139 17 chr12 44021871 44022287 -99764168 + MLT1C LTR MaLR 1 467 0 402 329 146 0 chr12 44022363 44022582 -99763873 - MIR SINE MIR -10 252 2 998 265 28 16 chr12 44023690 44023939 -99762516 - MIR SINE MIR -2 260 9 270 23 0 23 chr12 44023977 44024021 -99762434 - L1PA4 LINE L1 0 6155 6113 23 68 0 0 chr12 44024086 44024130 -99762325 + AT_rich Low_complexity Low_complexity 1 44 0 1404 158 75 116 chr12 44024137 44024498 -99761957 + MER7A DNA MER2_type 1 344 -2 2052 122 30 13 chr12 44024506 44024809 -99761646 - AluSx SINE Alu -4 308 1 22 56 0 0 chr12 44024812 44024848 -99761607 + AT_rich Low_complexity Low_complexity 1 36 0 2288 122 11 3 chr12 44024908 44025260 -99761195 + THE1A LTR MaLR 1 355 0 187 328 49 0 chr12 44025999 44026060 -99760395 + L2 LINE L2 3245 3308 -5 1657 154 19 4 chr12 44027092 44027358 -99759097 - AluJb SINE Alu -20 292 23 2918 94 75 0 chr12 44027455 44027868 -99758587 - MLT2A2 LTR ERVL -9 444 1 308 274 40 16 chr12 44028232 44028356 -99758099 - L2 LINE L2 -103 3210 3084 233 286 0 0 chr12 44028380 44028436 -99758019 + (TG)n Simple_repeat Simple_repeat 1 56 0 220 204 0 0 chr12 44028464 44028508 -99757947 - L2 LINE L2 -280 3033 2990 1945 215 215 25 chr12 44028513 44029344 -99757111 + Zaphod DNA AcHobo 2 990 -3041 1441 241 66 2 chr12 44029342 44029752 -99756703 + Zaphod DNA AcHobo 3595 4030 -1 * 233 265 0 0 chr12 44029765 44029814 -99756641 - L2 LINE L2 -333 2980 2932 1387 218 18 50 chr12 44029819 44030199 -99756256 - MLT1A2 LTR MaLR -6 368 1 732 298 91 54 chr12 44030199 44030551 -99755904 - L2 LINE L2 -378 2936 2572 6016 149 9 9 chr12 44030553 44032055 -99754400 + L1PA16 LINE L1 4659 6165 -1 5684 157 54 28 chr12 44032051 44032357 -99754098 + L1MC1 LINE L1 5017 5314 -1019 * 1872 158 32 0 chr12 44032357 44032642 -99753813 + AluSx SINE Alu 1 294 -18 5684 157 54 28 chr12 44032642 44033608 -99752847 + L1MC1 LINE L1 5314 6332 -1 489 212 195 0 chr12 44033611 44033672 -99752783 - L1MEc LINE L1 -6219 177 129 531 45 0 0 chr12 44033672 44033738 -99752717 + (TG)n Simple_repeat Simple_repeat 1 66 0 489 212 195 0 chr12 44033738 44033794 -99752661 - L1MEc LINE L1 -6267 129 37 2060 135 3 0 chr12 44034256 44034552 -99751903 - AluSx SINE Alu -15 297 1 377 360 118 37 chr12 44037588 44038589 -99747866 - L2 LINE L2 -16 3256 2170 536 295 23 6 chr12 44038592 44038765 -99747690 + MER117 DNA MER1_type 1 176 -21 1353 43 0 0 chr12 44039033 44039196 -99747259 + L1MA1 LINE L1 6134 6296 -6 748 97 0 0 chr12 44040262 44040374 -99746081 - THE1B LTR MaLR 0 364 264 384 23 0 0 chr12 44040365 44040409 -99746046 - THE1C LTR MaLR -331 44 1 * 22 73 0 15 chr12 44040448 44040491 -99745964 + AT_rich Low_complexity Low_complexity 1 44 -23 2388 168 2 26 chr12 44040491 44040950 -99745505 + L1MB5 LINE L1 5713 6160 -14 22 73 0 15 chr12 44040950 44040974 -99745481 + AT_rich Low_complexity Low_complexity 44 67 0 508 148 11 0 chr12 44041054 44041142 -99745313 - MER53 DNA DNA -100 89 1 283 263 62 0 chr12 44041145 44041225 -99745230 + L2 LINE L2 3208 3292 -21 247 340 77 21 chr12 44041703 44041938 -99744517 - L1ME LINE L1 -536 5585 5338 1850 133 37 10 chr12 44042295 44042589 -99743866 - AluSx SINE Alu -9 303 2 1348 109 5 5 chr12 44043024 44043260 -99743195 - AluSg/x SINE Alu 0 334 99 667 182 0 0 chr12 44044401 44044511 -99741944 + FLAM_C SINE Alu 1 110 -33 438 53 0 0 chr12 44044518 44044575 -99741880 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 246 119 0 119 chr12 44046038 44046105 -99740350 + MER53 DNA DNA 1 59 -130 193 229 66 16 chr12 44046231 44046292 -99740163 - L2 LINE L2 -4 3268 3205 2017 115 14 7 chr12 44046970 44047258 -99739197 + AluSx SINE Alu 9 298 -14 348 289 151 28 chr12 44047573 44047864 -99738591 + L1ME LINE L1 5435 5761 -360 23 86 0 0 chr12 44048000 44048058 -99738397 + AT_rich Low_complexity Low_complexity 1 58 0 999 286 24 44 chr12 44050416 44050825 -99735630 + MLT1J LTR MaLR 1 401 -110 276 300 57 32 chr12 44051050 44051310 -99735145 + L1MEd LINE L1 551 820 -5299 2168 119 0 0 chr12 44051310 44051596 -99734859 - AluSg SINE Alu -24 286 1 276 300 57 32 chr12 44051596 44051615 -99734840 + L1MEd LINE L1 820 837 -5282 21 57 0 0 chr12 44051734 44051769 -99734686 + AT_rich Low_complexity Low_complexity 1 35 0 678 226 14 73 chr12 44051769 44052044 -99734411 + L1MEd LINE L1 930 1188 -4931 14486 26 3 2 chr12 44052067 44054565 -99731890 + L1PA8 LINE L1 3670 6166 -6 616 205 60 90 chr12 44054568 44054768 -99731687 - Charlie4 DNA MER1_type -1764 197 4 658 334 124 19 chr12 44054770 44055357 -99731098 - L2 LINE L2 -1043 2271 1623 539 255 245 5 chr12 44055359 44055559 -99730896 + MIR SINE MIR 12 259 -3 557 251 127 76 chr12 44055623 44055993 -99730462 - MLT1F1 LTR MaLR 0 590 202 270 324 88 27 chr12 44056040 44056188 -99730267 - MER5B DNA MER1_type -19 159 3 553 321 216 24 chr12 44056545 44057451 -99729004 + L2 LINE L2 959 2038 -1276 1584 237 66 44 chr12 44057455 44058004 -99728451 + MLT1F1 LTR MaLR 1 566 -1 1543 207 59 9 chr12 44058006 44058330 -99728125 + MER58B DNA MER1_type 1 340 -1 330 132 0 0 chr12 44058499 44058552 -99727903 + (TA)n Simple_repeat Simple_repeat 1 53 0 401 356 48 38 chr12 44058601 44058890 -99727565 + L2 LINE L2 2279 2570 -744 457 292 15 50 chr12 44058914 44059116 -99727339 + L2 LINE L2 3117 3311 -2 401 77 0 0 chr12 44059281 44059333 -99727122 + Alu SINE Alu 242 293 -9 24 0 0 0 chr12 44059640 44059664 -99726791 + AT_rich Low_complexity Low_complexity 1 24 0 988 256 82 30 chr12 44059880 44060150 -99726305 + MLT1I LTR MaLR 116 399 -10 183 304 0 36 chr12 44061206 44061262 -99725193 + L2 LINE L2 2729 2782 -532 27 0 0 0 chr12 44062240 44062267 -99724188 + AT_rich Low_complexity Low_complexity 1 27 0 371 318 209 7 chr12 44062575 44062877 -99723578 + L2 LINE L2 2477 2839 -475 2185 71 54 24 chr12 44063074 44063368 -99723087 - AluSp SINE Alu -10 303 1 326 213 107 33 chr12 44065340 44065490 -99720965 - L1MC5 LINE L1 -30 7931 7771 532 216 0 0 chr12 44066890 44066987 -99719468 - FAM SINE Alu -83 102 6 735 171 0 0 chr12 44066999 44067116 -99719339 + FLAM_C SINE Alu 1 117 -16 574 226 153 29 chr12 44067131 44067445 -99719010 - L1MC5 LINE L1 -298 7663 7311 405 0 0 0 chr12 44067445 44067490 -99718965 + (TA)n Simple_repeat Simple_repeat 1 45 0 1676 124 0 4 chr12 44067492 44067733 -99718722 - AluJb SINE Alu 0 312 73 823 130 0 70 chr12 44067933 44068133 -99718322 + THE1C-int LTR MaLR 1395 1580 0 2665 105 5 0 chr12 44068133 44068506 -99717949 + THE1C LTR MaLR 1 375 0 857 198 103 109 chr12 44068738 44069017 -99717438 - L1MC5 LINE L1 -787 7174 6898 1926 156 6 33 chr12 44069017 44069382 -99717073 + THE1A LTR MaLR 1 355 0 857 198 103 109 chr12 44069382 44069596 -99716859 - L1MC5 LINE L1 -1063 6898 6684 1928 137 156 13 chr12 44069954 44070327 -99716128 + MSTA LTR MaLR 3 428 0 331 360 90 28 chr12 44070329 44070651 -99715804 + L2 LINE L2 675 1016 -2298 927 169 31 36 chr12 44070869 44071094 -99715361 + THE1C LTR MaLR 1 224 -151 572 167 11 150 chr12 44074194 44074374 -99712081 + THE1C LTR MaLR 221 375 0 299 198 38 75 chr12 44074379 44074485 -99711970 + L2 LINE L2 1291 1392 -1922 377 310 35 0 chr12 44074515 44074657 -99711798 - MIR SINE MIR -24 238 92 335 316 106 23 chr12 44074674 44074945 -99711510 - MLT1H LTR MaLR -19 530 195 201 361 28 0 chr12 44075072 44075144 -99711311 - MIR3 SINE MIR -120 88 15 558 268 72 10 chr12 44075669 44075878 -99710577 - MLT1J2 LTR MaLR -25 425 204 288 228 196 0 chr12 44075919 44076011 -99710444 - MLT1J2 LTR MaLR -309 141 32 322 308 62 26 chr12 44076018 44076213 -99710242 + L2 LINE L2 1960 2161 -1153 986 178 24 29 chr12 44076401 44076609 -99709846 - MER20 DNA MER1_type -1 218 12 957 210 0 0 chr12 44076704 44076871 -99709584 - AluJb SINE Alu -15 297 131 751 242 63 16 chr12 44077099 44077289 -99709166 + MIR SINE MIR 16 214 -48 6850 121 44 18 chr12 44077292 44078431 -99708024 + Tigger1 DNA MER2_type 2 1169 -1249 6531 139 16 7 chr12 44078427 44079538 -99706917 + Tigger1 DNA MER2_type 1298 2418 0 * 575 238 62 38 chr12 44079676 44079836 -99706619 + FRAM SINE Alu 1 164 -2 2404 114 8 3 chr12 44079886 44080254 -99706201 - L1PB1 LINE L1 0 6151 5782 354 91 0 0 chr12 44080254 44080309 -99706146 + (TA)n Simple_repeat Simple_repeat 2 56 0 9415 191 18 15 chr12 44080333 44083157 -99703298 - L1PB1 LINE L1 -360 5791 2962 2145 197 55 2 chr12 44083161 44083634 -99702821 + L1PB1 LINE L1 2455 2952 -3194 337 302 63 24 chr12 44083700 44083826 -99702629 + L2 LINE L2 3136 3266 -6 327 49 0 0 chr12 44084300 44084341 -99702114 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chr12 44084381 44084409 -99702046 + AT_rich Low_complexity Low_complexity 1 28 0 526 240 8 8 chr12 44088449 44088570 -99697885 - L2 LINE L2 -1 3312 3192 419 109 0 0 chr12 44090755 44090841 -99695614 + AluJ/FRAM SINE Alu 230 315 0 23 0 0 0 chr12 44092131 44092154 -99694301 + AT_rich Low_complexity Low_complexity 1 23 0 492 271 100 0 chr12 44092336 44092476 -99693979 + MER58B DNA MER1_type 188 341 0 246 369 10 0 chr12 44092549 44092652 -99693803 + MIR SINE MIR 52 155 -107 614 225 132 41 chr12 44092772 44093120 -99693335 - MLT1F LTR MaLR -19 523 176 243 224 45 60 chr12 44093133 44093200 -99693255 + MLT1H1 LTR MaLR 129 194 -361 * 601 276 7 28 chr12 44093196 44093377 -99693078 - MLT1H1 LTR MaLR -374 221 1 230 286 0 0 chr12 44094335 44094391 -99692064 - MIR SINE MIR -8 254 199 559 269 36 12 chr12 44094392 44094559 -99691896 - MER5B DNA MER1_type -7 171 1 23 0 0 0 chr12 44094705 44094728 -99691727 + AT_rich Low_complexity Low_complexity 1 23 0 194 349 0 15 chr12 44094743 44094809 -99691646 + L2 LINE L2 3189 3253 -19 224 108 86 11 chr12 44095329 44095422 -99691033 + (TTAA)n Simple_repeat Simple_repeat 2 101 0 22 56 0 0 chr12 44095422 44095458 -99690997 + AT_rich Low_complexity Low_complexity 1 36 0 3101 82 23 14 chr12 44096112 44096552 -99689903 - MLT2A1 LTR ERVL 0 444 1 257 244 13 51 chr12 44096877 44096955 -99689500 + MIR SINE MIR 187 261 -1 420 20 0 0 chr12 44097219 44097268 -99689187 + (TA)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr12 44097822 44097843 -99688612 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 44097904 44097925 -99688530 + AT_rich Low_complexity Low_complexity 1 21 0 226 246 43 0 chr12 44097987 44098056 -99688399 + (TA)n Simple_repeat Simple_repeat 2 73 0 24 0 0 0 chr12 44098984 44099008 -99687447 + AT_rich Low_complexity Low_complexity 1 24 0 213 271 17 0 chr12 44099305 44099364 -99687091 + MIR SINE MIR 203 262 0 637 251 77 5 chr12 44099932 44100127 -99686328 - MER3 DNA MER1_type 0 209 1 199 299 85 55 chr12 44100383 44100547 -99685908 + L2 LINE L2 346 514 -2800 264 77 0 0 chr12 44102397 44102436 -99684019 + (TG)n Simple_repeat Simple_repeat 2 40 0 752 314 146 40 chr12 44104604 44105159 -99681296 + L3 LINE CR1 793 1406 -171 288 0 0 0 chr12 44105288 44105320 -99681135 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 315 0 0 0 chr12 44105319 44105354 -99681101 + (CA)n Simple_repeat Simple_repeat 1 35 0 235 226 218 32 chr12 44105532 44105656 -99680799 + L3 LINE CR1 1430 1576 -1 1988 136 7 3 chr12 44106622 44106963 -99679492 - AluSx SINE Alu 0 312 1 381 245 101 31 chr12 44107092 44107251 -99679204 + MIR SINE MIR 82 251 -11 238 288 185 19 chr12 44109124 44109293 -99677162 + MIR3 SINE MIR 2 200 -61 682 286 47 28 chr12 44109963 44110218 -99676237 + MIR SINE MIR 2 261 -1 635 243 231 15 chr12 44110303 44110571 -99675884 - MER102b DNA MER1_type -15 326 1 2885 6 0 0 chr12 44110792 44111103 -99675352 - AluYa5 SINE Alu 0 311 1 208 315 56 22 chr12 44111261 44111350 -99675105 + L2 LINE L2 3183 3274 -39 2278 153 67 47 chr12 44111354 44111849 -99674606 - MLT1D LTR MaLR 0 505 1 333 352 75 51 chr12 44112029 44112282 -99674173 + L2 LINE L2 3014 3272 0 2189 84 32 29 chr12 44112473 44112817 -99673638 - THE1C LTR MaLR 0 375 31 281 180 20 0 chr12 44113207 44113257 -99673198 - 5S rRNA rRNA -70 51 1 290 376 58 35 chr12 44113835 44114008 -99672447 - MIR SINE MIR -70 192 16 659 297 74 0 chr12 44114016 44114191 -99672264 + MER91A DNA MER1_type 9 196 0 2418 78 0 3 chr12 44114272 44114579 -99671876 + AluY SINE Alu 1 306 -5 220 256 31 108 chr12 44114853 44114982 -99671473 - L2 LINE L2 -10 3262 3144 25 0 0 0 chr12 44115961 44115986 -99670469 + AT_rich Low_complexity Low_complexity 1 25 0 349 242 33 22 chr12 44116040 44116131 -99670324 - MIR SINE MIR -52 210 119 330 87 0 0 chr12 44116152 44116198 -99670257 + (TA)n Simple_repeat Simple_repeat 1 46 0 1022 205 70 86 chr12 44116253 44116419 -99670036 - L1ME3A LINE L1 -89 6081 5914 2124 141 30 15 chr12 44116419 44116824 -99669631 + L1MB8 LINE L1 5768 6178 0 1022 205 70 86 chr12 44116824 44117042 -99669413 - L1ME3A LINE L1 -256 5914 5703 326 308 110 55 chr12 44117206 44117570 -99668885 - L1ME3A LINE L1 -2132 5676 5293 314 272 126 33 chr12 44117632 44117674 -99668781 - L1ME3A LINE L1 -893 5253 5216 2901 151 17 4 chr12 44117674 44118204 -99668251 - L1MB3 LINE L1 0 6183 5647 314 272 126 33 chr12 44118204 44118507 -99667948 - L1ME3A LINE L1 -930 5216 4873 550 307 112 15 chr12 44119377 44119582 -99666873 + MIR SINE MIR 19 243 -19 1647 177 48 7 chr12 44119764 44120058 -99666397 + AluSx SINE Alu 1 306 -6 239 116 0 0 chr12 44120834 44120877 -99665578 + L1MC4 LINE L1 6659 6701 -1341 692 292 41 45 chr12 44122219 44122462 -99663993 - MIR SINE MIR -11 251 10 240 200 0 0 chr12 44122721 44122771 -99663684 + (TA)n Simple_repeat Simple_repeat 2 51 0 210 360 80 0 chr12 44124012 44124112 -99662343 - L2 LINE L2 -16 3256 3149 503 245 86 29 chr12 44124688 44124933 -99661522 - L1ME4a LINE L1 -73 6048 5790 739 252 74 79 chr12 44125738 44126195 -99660260 - MLT1C LTR MaLR -5 462 8 1857 154 0 24 chr12 44127018 44127310 -99659145 - AluJb SINE Alu -22 290 6 225 300 0 0 chr12 44127345 44127405 -99659050 + L1ME4a LINE L1 5600 5659 -2149 465 71 0 0 chr12 44127425 44127495 -99658960 + (CA)n Simple_repeat Simple_repeat 1 70 0 1463 177 88 3 chr12 44127496 44127779 -99658676 - L1MC1 LINE L1 -8 6325 6019 277 259 79 22 chr12 44127795 44127934 -99658521 + L1ME4a LINE L1 5751 5897 -224 333 131 0 0 chr12 44127952 44128013 -99658442 + (TG)n Simple_repeat Simple_repeat 2 62 0 603 333 106 19 chr12 44128174 44128553 -99657902 + L2 LINE L2 2302 2713 -601 314 140 0 0 chr12 44128559 44128609 -99657846 - MLT2B2 LTR ERVL -6 514 465 1093 99 7 0 chr12 44128659 44128810 -99657645 - MLT2B2 LTR ERVL -42 473 322 1123 231 101 20 chr12 44128815 44129162 -99657293 - MLT1D LTR MaLR -130 375 1 325 284 127 86 chr12 44129795 44130087 -99656368 + L2 LINE L2 2346 2649 -665 25 0 0 0 chr12 44130170 44130195 -99656260 + AT_rich Low_complexity Low_complexity 1 25 0 409 233 48 0 chr12 44130505 44130608 -99655847 - MIR SINE MIR -48 214 107 985 208 37 28 chr12 44130664 44130880 -99655575 - MER20 DNA MER1_type 0 219 2 2984 318 116 21 chr12 44130938 44133262 -99653193 - L2 LINE L2 -1 3271 725 4112 258 112 28 chr12 44133508 44135072 -99651383 - L2 LINE L2 -321 2992 1292 415 300 131 9 chr12 44135192 44135542 -99650913 - L1M4 LINE L1 -3576 2570 2178 435 325 52 45 chr12 44135628 44135917 -99650538 + LTR67 LTR ERVL 1 291 -266 1218 195 93 16 chr12 44136057 44136370 -99650085 + MLT1J1 LTR MaLR 6 342 -104 249 277 43 11 chr12 44136405 44136499 -99649956 - MER5A DNA MER1_type -90 99 3 8527 93 22 31 chr12 44137606 44137897 -99648558 + L1PA8A LINE L1 3956 4248 -1883 2571 34 3 0 chr12 44137897 44138191 -99648264 - AluY SINE Alu -16 295 1 8527 93 22 31 chr12 44138191 44140042 -99646413 + L1PA8A LINE L1 4248 6076 -55 998 169 62 0 chr12 44140213 44140391 -99646064 + MER20 DNA MER1_type 30 218 -1 360 341 8 8 chr12 44141742 44141874 -99644581 - L2 LINE L2 0 3313 3182 218 262 0 0 chr12 44141959 44142001 -99644454 - L2 LINE L2 -18 3295 3254 190 306 32 0 chr12 44142040 44142102 -99644353 - MIR SINE MIR -121 141 78 365 367 0 8 chr12 44142533 44142653 -99643802 + MLT1K LTR MaLR 97 215 -373 491 270 82 0 chr12 44142755 44142914 -99643541 + MLT1K LTR MaLR 409 580 -8 542 340 45 5 chr12 44143964 44144195 -99642260 - MIR SINE MIR -16 246 5 448 240 53 27 chr12 44144673 44144691 -99641764 - L1MA10 LINE L1 0 6334 6317 385 248 56 135 chr12 44144691 44144944 -99641511 - L1ME1 LINE L1 -5 6230 5995 * 5018 154 70 16 chr12 44144939 44145240 -99641215 - L1MA8 LINE L1 -5 6286 6003 2078 100 48 0 chr12 44145240 44145529 -99640926 - AluSc SINE Alu -6 303 1 5018 154 70 16 chr12 44145529 44146197 -99640258 - L1MA8 LINE L1 -288 6003 5264 2770 206 54 20 chr12 44146188 44146470 -99639985 - L1ME1 LINE L1 -207 6028 5757 * 2491 207 21 49 chr12 44146470 44147040 -99639415 + MLT2B3 LTR ERVL 1 554 0 2770 206 54 20 chr12 44147040 44148067 -99638388 - L1ME1 LINE L1 -478 5757 4674 408 276 48 7 chr12 44148072 44148217 -99638238 - L1ME1 LINE L1 -5533 863 713 24 0 0 0 chr12 44148496 44148520 -99637935 + AT_rich Low_complexity Low_complexity 1 24 0 684 54 0 0 chr12 44148727 44148819 -99637636 - L1PA7 LINE L1 -840 5306 5215 6502 65 0 1 chr12 44148819 44149696 -99636759 + L1PA7 LINE L1 5306 6182 0 2684 35 0 16 chr12 44149771 44150084 -99636371 + AluY SINE Alu 1 308 -3 881 184 12 152 chr12 44150090 44150426 -99636029 + AluSq SINE Alu 1 289 -14 832 238 122 13 chr12 44150855 44151642 -99634813 + L1ME1 LINE L1 2611 3311 -2855 2173 119 7 0 chr12 44151642 44151944 -99634511 + AluSx SINE Alu 1 304 -8 832 238 122 13 chr12 44151944 44154141 -99632314 + L1ME1 LINE L1 3311 6147 -19 263 143 0 0 chr12 44154141 44154183 -99632272 + L1MB1 LINE L1 6127 6168 0 2624 122 21 14 chr12 44155077 44155502 -99630953 + MSTA LTR MaLR 1 428 0 3186 125 40 89 chr12 44155896 44156528 -99629927 + L1PA16 LINE L1 5566 6166 0 1220 171 186 4 chr12 44156556 44156830 -99629625 + L1MC1 LINE L1 6010 6333 0 258 180 70 120 chr12 44157478 44157578 -99628877 + MIR3 SINE MIR 111 205 -3 329 381 32 0 chr12 44158001 44158127 -99628328 + L2 LINE L2 3133 3262 -10 218 313 24 24 chr12 44158203 44158286 -99628169 - MIR SINE MIR -56 206 124 1053 240 125 46 chr12 44159815 44160182 -99626273 - MLT1I LTR MaLR -7 402 7 22 0 0 0 chr12 44161427 44161449 -99625006 + AT_rich Low_complexity Low_complexity 1 22 0 966 274 50 32 chr12 44161508 44161888 -99624567 - L1MC4 LINE L1 -140 7902 7516 3873 100 2 12 chr12 44161974 44162545 -99623910 + L1PB1 LINE L1 5586 6150 -1 426 150 64 168 chr12 44162806 44162984 -99623471 + MIR SINE MIR 5 163 -45 207 0 0 0 chr12 44163014 44163037 -99623418 + (TA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr12 44163085 44163107 -99623348 + AT_rich Low_complexity Low_complexity 1 22 0 880 157 0 11 chr12 44163886 44164064 -99622391 + GA-rich Low_complexity Low_complexity 4 179 0 484 309 87 23 chr12 44164677 44164909 -99621546 - MIR SINE MIR -4 258 4 2810 7 0 0 chr12 44165593 44165896 -99620559 - AluYa5 SINE Alu -8 303 1 302 241 23 0 chr12 44166064 44166151 -99620304 - L1ME4a LINE L1 -67 6054 5966 264 238 13 60 chr12 44166196 44166302 -99620153 + (TA)n Simple_repeat Simple_repeat 1 100 -44 3312 202 28 1 chr12 44166302 44166994 -99619461 + MER67C LTR ERV1 1 710 0 264 238 13 60 chr12 44166994 44167038 -99619417 + (TA)n Simple_repeat Simple_repeat 100 144 0 233 190 134 35 chr12 44167940 44168082 -99618373 - L1ME4a LINE L1 0 6121 5966 204 40 0 0 chr12 44168451 44168476 -99617979 + (T)n Simple_repeat Simple_repeat 1 25 0 287 297 72 36 chr12 44168493 44168631 -99617824 - L2 LINE L2 -6 3307 3165 223 173 58 0 chr12 44169451 44169503 -99616952 + CT-rich Low_complexity Low_complexity 4 58 0 11407 207 66 38 chr12 44169505 44172621 -99613834 - L1MA1 LINE L1 -168 6836 3808 5657 117 48 0 chr12 44172621 44173689 -99612766 - L1PA15 LINE L1 -3 6162 5080 11407 207 66 38 chr12 44173689 44174082 -99612373 - L1MA1 LINE L1 -3196 3808 3427 2140 108 0 63 chr12 44174082 44174415 -99612040 - AluSx SINE Alu 0 312 1 11407 207 66 38 chr12 44174415 44175567 -99610888 - L1MA1 LINE L1 -3577 3427 1825 467 353 88 0 chr12 44175597 44175869 -99610586 - L1PA15-16 LINE L1 -5392 1457 1162 1325 301 41 45 chr12 44175957 44176645 -99609810 - L1PA15-16 LINE L1 -6119 730 46 524 287 80 42 chr12 44176878 44177115 -99609340 - MIR SINE MIR 0 262 17 1176 267 74 47 chr12 44177697 44178460 -99607995 + L2 LINE L2 2530 3313 0 354 238 252 9 chr12 44178509 44178719 -99607736 - L1ME4a LINE L1 -14 6107 5847 41122 31 21 1 chr12 44179878 44185908 -99600547 - L1PA2 LINE L1 0 6155 1 327 300 24 56 chr12 44187181 44187357 -99599098 - MIR SINE MIR -36 172 5 2212 102 0 19 chr12 44187515 44187828 -99598627 - AluSc SINE Alu -2 307 1 2239 118 0 6 chr12 44188557 44188870 -99597585 - AluSx SINE Alu -1 311 1 25 0 0 0 chr12 44188900 44188925 -99597530 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr12 44189037 44189059 -99597396 + AT_rich Low_complexity Low_complexity 1 22 0 236 373 155 27 chr12 44189874 44190537 -99595918 - L2 LINE L2 -508 2806 2059 246 314 59 29 chr12 44192026 44192128 -99594327 + L2 LINE L2 427 531 -2783 312 238 0 0 chr12 44192136 44192199 -99594256 + MER81 DNA DNA 44 106 -8 933 298 103 34 chr12 44192234 44192390 -99594065 + L2 LINE L2 565 709 -2605 2009 132 10 3 chr12 44192390 44192700 -99593755 - AluSx SINE Alu 0 312 1 933 298 103 34 chr12 44192700 44193076 -99593379 + L2 LINE L2 709 1134 -2180 752 224 121 56 chr12 44193095 44193327 -99593128 + MIR SINE MIR 6 252 -10 1045 304 162 21 chr12 44193336 44193948 -99592507 + L2 LINE L2 1163 1860 -1454 224 319 0 0 chr12 44193981 44194028 -99592427 + L2 LINE L2 2107 2153 -1161 228 297 132 0 chr12 44194963 44195054 -99591401 - MIR SINE MIR -67 195 93 2115 122 0 0 chr12 44195880 44196191 -99590264 + AluSx SINE Alu 1 311 0 6574 36 2 0 chr12 44196740 44197577 -99588878 - L1PA4 LINE L1 -5 6150 5313 22 0 0 0 chr12 44197599 44197621 -99588834 + AT_rich Low_complexity Low_complexity 1 22 0 3170 113 2 0 chr12 44197777 44198235 -99588220 + L1PA15 LINE L1 5707 6165 0 343 326 124 5 chr12 44198373 44198406 -99588049 + L2 LINE L2 3045 3073 -199 2245 164 59 2 chr12 44198406 44198815 -99587640 - MSTB1 LTR MaLR 0 432 1 343 326 124 5 chr12 44198815 44198974 -99587481 + L2 LINE L2 3073 3260 -12 35 24 0 0 chr12 44198974 44199016 -99587439 + AT_rich Low_complexity Low_complexity 1 42 0 24782 40 2 0 chr12 44199016 44203021 -99583434 - L1PA3 LINE L1 -3 6152 2144 326 213 107 33 chr12 44204229 44204379 -99582076 - L1MC5 LINE L1 -30 7931 7771 532 216 0 0 chr12 44205779 44205876 -99580579 - FAM SINE Alu -83 102 6 735 171 0 0 chr12 44205888 44206005 -99580450 + FLAM_C SINE Alu 1 117 -16 574 226 153 29 chr12 44206020 44206334 -99580121 - L1MC5 LINE L1 -298 7663 7311 405 0 0 0 chr12 44206334 44206379 -99580076 + (TA)n Simple_repeat Simple_repeat 1 45 0 2164 125 3 3 chr12 44206382 44206694 -99579761 - AluJb SINE Alu 0 312 1 400 313 0 16 chr12 44206740 44206868 -99579587 - MLT1H LTR MaLR -197 352 227 2593 104 22 0 chr12 44206870 44207236 -99579219 + THE1C LTR MaLR 1 374 -1 8073 122 34 15 chr12 44207238 44207489 -99578966 + THE1C-int LTR MaLR 2 247 -1333 2281 111 17 8 chr12 44207489 44207841 -99578614 - THE1A LTR MaLR 0 355 1 8073 122 34 15 chr12 44207841 44208880 -99577575 + THE1C-int LTR MaLR 247 1317 -263 1049 110 0 0 chr12 44209651 44209787 -99576668 + AluSq/x SINE Alu 1 136 -177 2412 81 0 7 chr12 44209787 44210097 -99576358 + AluSg SINE Alu 1 308 -2 3288 173 9 22 chr12 44210098 44210918 -99575537 + L1M2 LINE L1 4699 5503 -743 360 255 355 42 chr12 44212029 44212429 -99574026 + L3 LINE CR1 885 1409 -168 571 173 0 0 chr12 44212627 44212731 -99573724 - U13 snRNA snRNA 0 104 1 197 202 45 101 chr12 44213277 44213366 -99573089 + MIR3 SINE MIR 124 207 -1 257 365 19 0 chr12 44213394 44213498 -99572957 - L2 LINE L2 -1 3312 3207 249 141 254 28 chr12 44213530 44213601 -99572854 + MER5C DNA MER1_type 1 87 -237 1811 174 0 3 chr12 44213654 44213947 -99572508 - AluJb SINE Alu -14 298 7 2008 129 7 7 chr12 44214176 44214478 -99571977 - AluSg SINE Alu -8 302 1 308 314 149 0 chr12 44215419 44215540 -99570915 - L2 LINE L2 -15 3257 3119 2535 87 6 11 chr12 44215615 44215970 -99570485 + L1PA8 LINE L1 5807 6159 -13 1903 103 58 7 chr12 44215996 44216288 -99570167 - THE1B LTR MaLR -57 307 1 2050 169 93 2 chr12 44216288 44216697 -99569758 + L1MC1 LINE L1 5882 6327 -6 792 211 91 4 chr12 44217246 44217511 -99568944 - L1M4 LINE L1 -937 5209 4922 310 235 53 53 chr12 44217480 44217612 -99568843 - L1M4 LINE L1 -840 5306 5175 * 750 133 0 8 chr12 44217672 44217792 -99568663 + FLAM_C SINE Alu 21 139 -4 1890 124 3 11 chr12 44218234 44218517 -99567938 - AluSx SINE Alu -31 281 1 32617 40 1 2 chr12 44219191 44223180 -99563275 - L1P LINE L1 -2155 3991 9 570 318 108 5 chr12 44225052 44225266 -99561189 - MIR SINE MIR -15 247 12 2189 83 0 48 chr12 44226602 44226915 -99559540 - AluY SINE Alu -13 298 1 372 300 17 17 chr12 44227004 44227124 -99559331 + MIR3 SINE MIR 83 202 -6 451 313 111 17 chr12 44227256 44227576 -99558879 - L2 LINE L2 -5 3308 2913 257 234 117 13 chr12 44228067 44228144 -99558311 + L1MD2 LINE L1 6233 6317 -42 223 371 68 15 chr12 44229061 44229193 -99557262 + MIR3 SINE MIR 66 204 -4 2028 133 0 16 chr12 44230025 44230333 -99556122 + AluSx SINE Alu 1 303 -9 1021 345 87 31 chr12 44230730 44231562 -99554893 + L2 LINE L2 2128 3008 -264 223 303 30 0 chr12 44231676 44231742 -99554713 - L2 LINE L2 -1 3312 3245 395 340 41 14 chr12 44231907 44232054 -99554401 + L2 LINE L2 3122 3272 0 1958 164 40 68 chr12 44232062 44232533 -99553922 - MLT1C LTR MaLR 0 467 10 453 273 256 0 chr12 44233283 44233459 -99552996 - MIR SINE MIR -40 222 2 364 298 48 40 chr12 44233494 44233618 -99552837 + L2 LINE L2 3144 3268 -4 2328 180 42 15 chr12 44235026 44235481 -99550974 - MLT1C LTR MaLR 0 467 1 40 0 0 0 chr12 44235532 44235572 -99550883 + AT_rich Low_complexity Low_complexity 1 40 0 266 300 108 17 chr12 44235577 44235697 -99550758 - MIR SINE MIR -26 236 106 620 299 48 0 chr12 44235721 44235928 -99550527 - MLT1L LTR MaLR 0 615 399 456 19 0 0 chr12 44236319 44236372 -99550083 + (CA)n Simple_repeat Simple_repeat 2 54 0 1162 201 136 60 chr12 44236939 44237381 -99549074 - MLT1E1 LTR MaLR -210 414 1 335 312 180 5 chr12 44237413 44237602 -99548853 - MIR SINE MIR -40 222 1 409 200 36 55 chr12 44237734 44237844 -99548611 + MER5B DNA MER1_type 5 112 -66 376 379 46 11 chr12 44237944 44238118 -99548337 + L3 LINE CR1 1397 1576 -1 2429 61 0 7 chr12 44239735 44240032 -99546423 + AluY SINE Alu 1 295 -16 416 264 25 0 chr12 44240047 44240168 -99546287 + L2 LINE L2 2190 2313 -1001 1750 227 147 17 chr12 44240176 44240994 -99545461 - L2 LINE L2 -7 3306 2395 186 355 0 0 chr12 44241806 44241868 -99544587 - L2 LINE L2 -1 3271 3210 * 1016 171 79 35 chr12 44241835 44242063 -99544392 - MIR SINE MIR -24 238 1 407 248 31 8 chr12 44242380 44242509 -99543946 - MER103 DNA DNA -2 164 33 197 322 86 118 chr12 44242831 44242868 -99543587 + L2 LINE L2 2978 3015 -257 192 111 0 0 chr12 44242868 44242904 -99543551 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 885 19 0 0 chr12 44242906 44243010 -99543445 - L1PA4 LINE L1 -3 6152 6049 197 322 86 118 chr12 44243010 44243224 -99543231 + L2 LINE L2 3016 3224 -48 5206 168 35 29 chr12 44243733 44245098 -99541357 - L1PA16 LINE L1 -9 6157 4784 381 102 0 0 chr12 44245098 44245157 -99541298 + (TG)n Simple_repeat Simple_repeat 2 60 0 5206 168 35 29 chr12 44245157 44245832 -99540623 - L1PA16 LINE L1 -1382 4784 4114 22 70 0 0 chr12 44246029 44246072 -99540383 + AT_rich Low_complexity Low_complexity 1 43 0 5517 291 100 29 chr12 44246197 44247630 -99538825 + L2 LINE L2 610 1940 -1373 2264 111 45 3 chr12 44247630 44247989 -99538466 - THE1C LTR MaLR -1 374 1 5517 291 100 29 chr12 44247989 44249060 -99537395 + L2 LINE L2 1940 3309 -4 26 0 0 0 chr12 44249540 44249566 -99536889 + AT_rich Low_complexity Low_complexity 1 26 0 639 147 46 0 chr12 44249666 44249775 -99536680 + MER46A DNA MER2_type 1 114 -122 840 283 115 56 chr12 44250188 44250598 -99535857 - MLT1J2 LTR MaLR -2 448 15 25 0 0 0 chr12 44250684 44250709 -99535746 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr12 44250812 44250837 -99535618 + AT_rich Low_complexity Low_complexity 1 25 0 30364 110 10 22 chr12 44250837 44253861 -99532594 - L1PA7 LINE L1 -4 6465 3407 324 0 0 0 chr12 44253861 44253897 -99532558 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1719 134 0 0 chr12 44253903 44254141 -99532314 - AluSc SINE Alu -39 270 33 30364 110 10 22 chr12 44254141 44257556 -99528899 - L1PA7 LINE L1 -3067 3402 9 297 338 101 0 chr12 44257903 44258042 -99528413 + L2 LINE L2 2715 2867 -447 21 36 0 0 chr12 44258429 44258457 -99527998 + AT_rich Low_complexity Low_complexity 1 28 0 334 177 85 146 chr12 44260880 44261044 -99525411 + MER5C DNA MER1_type 170 323 -1 828 252 68 9 chr12 44261634 44261856 -99524599 + MLT1C LTR MaLR 225 459 -8 337 319 28 52 chr12 44261956 44262058 -99524397 + MIR SINE MIR 18 121 -141 2554 58 0 3 chr12 44262058 44262366 -99524089 - AluY SINE Alu -4 307 1 337 319 28 52 chr12 44262366 44262514 -99523941 + MIR SINE MIR 121 262 0 226 310 42 70 chr12 44263074 44263216 -99523239 - L2 LINE L2 -1 3312 3175 183 333 227 0 chr12 44263584 44263659 -99522796 + L2 LINE L2 2250 2341 -973 2082 142 3 0 chr12 44263853 44264163 -99522292 + AluSx SINE Alu 2 312 0 265 305 105 0 chr12 44264407 44264503 -99521952 + MIR SINE MIR 43 146 -63 188 35 35 0 chr12 44266016 44266045 -99520410 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 714 194 33 0 chr12 44266310 44266490 -99519965 - L1MDa LINE L1 -2756 3784 3599 4566 155 39 53 chr12 44266494 44267191 -99519264 + L1MA4 LINE L1 4600 5305 -995 273 29 0 0 chr12 44267191 44267225 -99519230 + (CAA)n Simple_repeat Simple_repeat 2 35 0 4566 155 39 53 chr12 44267225 44267565 -99518890 + L1MA4 LINE L1 5305 5648 -652 731 186 0 0 chr12 44267565 44267706 -99518749 + FLAM_C SINE Alu 1 141 0 4566 155 39 53 chr12 44267706 44268362 -99518093 + L1MA4 LINE L1 5648 6295 -5 3811 250 67 22 chr12 44268373 44268726 -99517729 - L1M4 LINE L1 -810 5730 5394 597 28 0 0 chr12 44268726 44268797 -99517658 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 3811 250 67 22 chr12 44268797 44269568 -99516887 - L1M4 LINE L1 -1146 5394 4453 2019 145 0 19 chr12 44269568 44269885 -99516570 - AluSx SINE Alu -1 311 1 3811 250 67 22 chr12 44269885 44270439 -99516016 - L1M4 LINE L1 -2087 4453 3925 1163 269 35 43 chr12 44270454 44271286 -99515169 - L1MDa LINE L1 -3571 2969 2142 1518 237 34 36 chr12 44271286 44271733 -99514722 + MLT1D LTR MaLR 1 446 -59 1659 187 9 38 chr12 44271733 44272048 -99514407 + AluSx SINE Alu 1 306 -6 2192 111 0 0 chr12 44272055 44272344 -99514111 + AluSx SINE Alu 1 289 -23 236 167 0 0 chr12 44272350 44272386 -99514069 + (TG)n Simple_repeat Simple_repeat 1 36 0 459 238 12 6 chr12 44272386 44272554 -99513901 + (TA)n Simple_repeat Simple_repeat 2 170 0 420 157 0 0 chr12 44272554 44272624 -99513831 + MLT1D LTR MaLR 557 626 0 2765 230 84 41 chr12 44272624 44273712 -99512743 - L1MDa LINE L1 -4394 2146 1013 723 93 0 0 chr12 44273912 44274009 -99512446 + HY3 scRNA scRNA 1 97 -4 317 43 21 0 chr12 44274009 44274056 -99512399 + (CAA)n Simple_repeat Simple_repeat 1 48 0 301 377 51 23 chr12 44274057 44274232 -99512223 - L1MDa LINE L1 -6345 195 16 * 705 296 79 95 chr12 44274230 44274740 -99511715 - L1MEd LINE L1 -4969 1150 633 258 32 0 0 chr12 44274740 44274771 -99511684 + (TG)n Simple_repeat Simple_repeat 2 32 0 705 296 79 95 chr12 44274771 44275478 -99510977 - L1MEd LINE L1 -5486 633 19 1802 198 29 63 chr12 44275508 44275997 -99510458 - MLT1D LTR MaLR 0 505 34 569 251 59 26 chr12 44276049 44276320 -99510135 + L1MDa LINE L1 2142 2421 -4119 609 183 42 8 chr12 44276320 44276440 -99510015 + MER20 DNA MER1_type 96 219 0 189 0 0 0 chr12 44277714 44277735 -99508720 + (TC)n Simple_repeat Simple_repeat 2 22 0 204 265 0 0 chr12 44278477 44278526 -99507929 + C-rich Low_complexity Low_complexity 128 176 0 21 0 0 0 chr12 44278959 44278980 -99507475 + AT_rich Low_complexity Low_complexity 1 21 0 25 83 0 0 chr12 44280906 44280966 -99505489 + AT_rich Low_complexity Low_complexity 1 60 0 212 128 43 0 chr12 44281119 44281166 -99505289 + T-rich Low_complexity Low_complexity 2 50 0 372 301 114 0 chr12 44283294 44283417 -99503038 + MIR SINE MIR 6 142 -120 263 352 86 13 chr12 44283669 44283902 -99502553 - L2 LINE L2 -219 3053 2804 1977 236 32 12 chr12 44283955 44284450 -99502005 + MLT1D LTR MaLR 1 505 0 2483 223 17 17 chr12 44284463 44285056 -99501399 + MLT1D-int LTR MaLR 14 606 -765 1267 237 61 131 chr12 44285193 44285829 -99500626 + MLT1D-int LTR MaLR 673 1264 -107 2858 119 53 12 chr12 44285867 44286378 -99500077 - L1MA8 LINE L1 -4 7706 7175 466 185 0 33 chr12 44286378 44286470 -99499985 + L1M2 LINE L1 5688 5776 -515 * 8657 163 22 39 chr12 44286465 44286737 -99499718 - L1MA8 LINE L1 -1526 6039 5764 2141 130 0 0 chr12 44286737 44287037 -99499418 - AluSx SINE Alu -7 305 6 8657 163 22 39 chr12 44287037 44288609 -99497846 - L1MA8 LINE L1 -1801 5764 4227 1280 186 73 102 chr12 44288609 44288981 -99497474 - MLT1A1 LTR MaLR -4 361 1 8657 163 22 39 chr12 44288981 44289043 -99497412 - L1MA8 LINE L1 -3338 4227 4165 4290 16 0 0 chr12 44289060 44289549 -99496906 - L1HS LINE L1 -3 6152 5664 3833 7 0 0 chr12 44289547 44290046 -99496409 + L1P1 LINE L1 5188 5686 -469 * 3363 230 40 72 chr12 44290045 44291717 -99494738 - L1MA8 LINE L1 -3390 4175 2451 * 2376 42 0 3 chr12 44291717 44292005 -99494450 + L1PA7 LINE L1 5853 6139 -15 3363 230 40 72 chr12 44292005 44292292 -99494163 - L1MA8 LINE L1 -5114 2451 2395 3519 108 10 0 chr12 44292292 44292801 -99493654 - MER75 DNA T2_type 0 514 1 3363 230 40 72 chr12 44292801 44293177 -99493278 - L1MA8 LINE L1 -5170 2395 2008 2410 234 39 65 chr12 44293177 44293989 -99492466 - L1MA8 LINE L1 -6238 1251 461 254 244 117 0 chr12 44294004 44294119 -99492336 + MLT1D-int LTR MaLR 1243 1730 -5 1843 198 65 46 chr12 44294125 44294621 -99491834 + MLT1D LTR MaLR 1 505 0 2128 133 3 0 chr12 44295406 44295707 -99490748 - AluSx SINE Alu -10 302 1 27 0 0 0 chr12 44296098 44296125 -99490330 + AT_rich Low_complexity Low_complexity 1 27 0 474 264 226 5 chr12 44296692 44296900 -99489555 + MIR SINE MIR 9 262 0 182 347 37 63 chr12 44297758 44297948 -99488507 + L2 LINE L2 2943 3127 -145 1706 258 25 44 chr12 44297958 44298702 -99487753 + L2 LINE L2 2543 3264 -49 242 365 62 14 chr12 44298764 44298909 -99487546 + L2 LINE L2 3117 3268 -4 746 286 15 5 chr12 44299374 44299573 -99486882 + L3 LINE CR1 1113 1313 -264 348 314 46 26 chr12 44299573 44299726 -99486729 - MER5A DNA MER1_type 0 189 34 * 468 250 65 8 chr12 44299624 44299748 -99486707 + MER5B DNA MER1_type 48 178 0 965 177 84 4 chr12 44299755 44299992 -99486463 + MER33 DNA MER1_type 1 256 -68 351 0 0 0 chr12 44300096 44300135 -99486320 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 190 346 84 28 chr12 44300142 44300249 -99486206 + L3 LINE CR1 1441 1553 -24 23 33 0 0 chr12 44304259 44304289 -99482166 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr12 44304330 44304351 -99482104 + AT_rich Low_complexity Low_complexity 1 21 0 30 45 0 0 chr12 44304510 44304554 -99481901 + AT_rich Low_complexity Low_complexity 1 44 0 2808 225 71 20 chr12 44304644 44305650 -99480805 - L1ME2 LINE L1 -11 6153 5086 1771 154 4 0 chr12 44306663 44306930 -99479525 - AluSx SINE Alu -12 300 33 23 0 0 0 chr12 44307231 44307254 -99479201 + AT_rich Low_complexity Low_complexity 1 23 0 661 136 88 16 chr12 44309168 44309293 -99477162 + MER3 DNA MER1_type 55 188 -21 27 0 0 0 chr12 44309788 44309815 -99476640 + AT_rich Low_complexity Low_complexity 1 27 0 885 263 52 40 chr12 44310019 44310441 -99476014 - L1ME2 LINE L1 -10 6154 5728 846 206 71 145 chr12 44310441 44310674 -99475781 + MLT1A2 LTR MaLR 1 195 -179 1956 163 0 0 chr12 44310674 44310974 -99475481 - AluJb SINE Alu -12 300 1 846 206 71 145 chr12 44310974 44311133 -99475322 + MLT1A2 LTR MaLR 195 364 -10 1587 226 61 56 chr12 44311133 44311638 -99474817 - L1ME2 LINE L1 -479 5685 5170 1356 197 144 40 chr12 44311638 44312060 -99474395 - MLT1C LTR MaLR -1 466 1 1587 226 61 56 chr12 44312060 44312541 -99473914 - L1ME2 LINE L1 -994 5170 4693 665 124 0 16 chr12 44312558 44312679 -99473776 + (TTCC)n Simple_repeat Simple_repeat 3 121 0 203 263 0 13 chr12 44366276 44366352 -99420103 + (TA)n Simple_repeat Simple_repeat 1 75 0 192 270 45 54 chr12 44367089 44367200 -99419255 - L2 LINE L2 -5 3308 3199 678 205 103 22 chr12 44368477 44368662 -99417793 + MER58C DNA MER1_type 1 200 -15 752 255 145 57 chr12 44368734 44369204 -99417251 - MLT1J LTR MaLR 0 511 1 245 87 0 22 chr12 44371437 44371483 -99414972 + (CAT)n Simple_repeat Simple_repeat 1 45 0 6653 98 17 29 chr12 44372431 44373527 -99412928 + L1MA3 LINE L1 5211 6294 -11 204 167 0 24 chr12 44373877 44373919 -99412536 + MIR SINE MIR 35 75 -187 259 266 87 71 chr12 44373993 44374177 -99412278 + MIR SINE MIR 69 255 -7 2337 70 0 3 chr12 44375484 44375784 -99410671 - AluY SINE Alu -12 299 1 186 103 0 0 chr12 44376678 44376707 -99409748 + (TG)n Simple_repeat Simple_repeat 2 30 0 876 212 16 11 chr12 44378519 44378703 -99407752 + MIR SINE MIR 37 221 -41 202 276 58 23 chr12 44378853 44378940 -99407515 - MIR SINE MIR -99 163 74 1217 220 32 125 chr12 44379057 44379648 -99406807 - L1ME3A LINE L1 -264 5906 5371 21 0 0 0 chr12 44379655 44379676 -99406779 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr12 44380637 44380665 -99405790 + AT_rich Low_complexity Low_complexity 1 28 0 508 269 130 50 chr12 44381220 44381543 -99404912 - L1MC4a LINE L1 -307 5814 5552 23 33 0 0 chr12 44381942 44381972 -99404483 + AT_rich Low_complexity Low_complexity 1 30 0 1484 144 148 0 chr12 44382873 44383136 -99403319 - AluSx SINE Alu 0 302 1 23 33 0 0 chr12 44383218 44383248 -99403207 + AT_rich Low_complexity Low_complexity 1 30 0 494 281 157 0 chr12 44383896 44384049 -99402406 - MER5A DNA MER1_type 0 189 13 315 280 30 10 chr12 44384244 44384344 -99402111 - MIR SINE MIR -118 144 43 216 0 0 0 chr12 44385469 44385493 -99400962 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 198 365 40 8 chr12 44386188 44386314 -99400141 - L2 LINE L2 -213 3059 2930 1131 260 44 29 chr12 44386480 44386865 -99399590 - L2 LINE L2 -690 2624 2234 3409 147 29 27 chr12 44386941 44387568 -99398887 - L1PB4 LINE L1 -3 6153 5526 2105 94 3 36 chr12 44387569 44387899 -99398556 - AluSp SINE Alu 0 313 1 21 0 0 0 chr12 44388110 44388131 -99398324 + AT_rich Low_complexity Low_complexity 1 21 0 425 294 79 56 chr12 44388139 44388479 -99397976 - L1MC4a LINE L1 -1155 4991 4644 26 64 0 0 chr12 44388602 44388649 -99397806 + AT_rich Low_complexity Low_complexity 1 47 0 209 351 117 50 chr12 44388673 44389195 -99397260 - L2 LINE L2 -2459 855 299 396 260 153 27 chr12 44389207 44389357 -99397098 - MLT1H LTR MaLR -2 547 379 291 319 66 11 chr12 44389570 44389661 -99396794 + L2 LINE L2 3202 3297 -16 215 114 23 0 chr12 44390157 44390201 -99396254 + (TG)n Simple_repeat Simple_repeat 2 46 0 292 292 62 18 chr12 44390546 44390659 -99395796 - L1ME LINE L1 -522 5599 5482 1909 336 117 48 chr12 44390711 44393243 -99393212 - L2 LINE L2 -427 2887 181 294 221 37 147 chr12 44394481 44394617 -99391838 - MIR SINE MIR 0 262 142 676 256 192 40 chr12 44394853 44395307 -99391148 - L2 LINE L2 0 3313 2794 245 304 49 29 chr12 44395719 44395821 -99390634 + MIR SINE MIR 33 136 -126 1588 106 18 0 chr12 44396166 44396392 -99390063 - MER30 DNA MER1_type 0 230 1 6003 138 26 20 chr12 44400229 44401450 -99385005 + L1MA9 LINE L1 5087 6301 -11 180 77 0 0 chr12 44401584 44401610 -99384845 + (TC)n Simple_repeat Simple_repeat 1 26 0 272 305 12 12 chr12 44402344 44402426 -99384029 - MIR SINE MIR -178 84 3 1947 139 0 7 chr12 44402497 44402629 -99383826 + AluSx SINE Alu 2 133 -179 423 0 0 0 chr12 44402629 44402676 -99383779 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1947 139 0 7 chr12 44402676 44402837 -99383618 + AluSx SINE Alu 133 293 -19 24 0 0 0 chr12 44403414 44403438 -99383017 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr12 44403491 44403515 -99382940 + (TG)n Simple_repeat Simple_repeat 2 25 0 456 325 109 60 chr12 44403559 44403929 -99382526 + L2 LINE L2 2123 2522 -792 2512 56 0 3 chr12 44403929 44404235 -99382220 - AluY SINE Alu -6 305 1 456 325 109 60 chr12 44404235 44404332 -99382123 + L2 LINE L2 2522 2613 -701 2865 9 0 0 chr12 44405520 44405836 -99380619 + AluYb8 SINE Alu 1 316 -2 21 0 0 0 chr12 44406212 44406233 -99380222 + AT_rich Low_complexity Low_complexity 1 21 0 458 298 147 0 chr12 44406538 44406729 -99379726 - MLT1K LTR MaLR -286 302 84 191 315 34 47 chr12 44406855 44407004 -99379451 + L2 LINE L2 2852 2998 -274 573 282 6 44 chr12 44407294 44407475 -99378980 + MER20B DNA MER1_type 3 176 -607 1858 114 0 0 chr12 44408682 44408927 -99377528 + AluSg SINE Alu 38 282 -28 704 167 65 0 chr12 44409488 44409626 -99376829 + MIR SINE MIR 66 212 -50 539 347 113 33 chr12 44410178 44410752 -99375703 - L3 LINE CR1 -154 1423 804 276 248 134 34 chr12 44410763 44410912 -99375543 - L1ME4a LINE L1 -2 6119 5956 23 0 0 0 chr12 44410973 44410996 -99375459 + AT_rich Low_complexity Low_complexity 1 23 0 361 203 13 13 chr12 44411272 44411349 -99375106 - MIR SINE MIR -6 256 180 497 304 7 7 chr12 44411349 44411487 -99374968 + MIR SINE MIR 2 139 -123 276 322 129 0 chr12 44411521 44411692 -99374763 - MIR SINE MIR -68 194 2 240 308 88 11 chr12 44413023 44413114 -99373341 + L2 LINE L2 2964 3061 -211 2729 82 5 0 chr12 44413206 44413586 -99372869 - L1PA8 LINE L1 0 6172 5791 460 186 186 43 chr12 44413872 44414012 -99372443 - MER63A DNA MER1_type 0 210 51 22 80 0 0 chr12 44415955 44416005 -99370450 + AT_rich Low_complexity Low_complexity 1 50 0 240 35 0 0 chr12 44417202 44417231 -99369224 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr12 44417678 44417706 -99368749 + AT_rich Low_complexity Low_complexity 1 28 0 225 140 160 0 chr12 44417706 44417756 -99368699 - L1 LINE L1 -1315 4831 4774 378 249 156 29 chr12 44418104 44418356 -99368099 - L1ME4a LINE L1 -756 5406 5316 566 271 107 29 chr12 44419128 44419578 -99366877 - L1ME4a LINE L1 -1312 4834 4350 21 0 0 0 chr12 44419959 44419980 -99366475 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr12 44420649 44420671 -99365784 + AT_rich Low_complexity Low_complexity 1 22 0 1708 292 117 7 chr12 44420958 44421722 -99364733 - L1MC4 LINE L1 -8 8034 7187 331 283 57 0 chr12 44422621 44422727 -99363728 + L2 LINE L2 3200 3311 -2 781 285 47 4 chr12 44422825 44423060 -99363395 - MIR SINE MIR -10 252 8 2269 103 0 6 chr12 44425305 44425616 -99360839 + AluSc SINE Alu 1 309 0 619 282 115 34 chr12 44425632 44426015 -99360440 - L1M4 LINE L1 -1191 4955 4542 681 259 84 0 chr12 44426022 44426319 -99360136 - L1M4 LINE L1 -1659 4487 4166 297 294 151 8 chr12 44428090 44428216 -99358239 + L3 LINE CR1 1361 1504 -73 463 295 107 37 chr12 44428354 44428598 -99357857 - MIR SINE MIR -1 261 1 405 256 301 10 chr12 44429043 44429242 -99357213 - MIR SINE MIR 0 262 6 506 292 128 22 chr12 44430250 44430476 -99355979 - MIR SINE MIR -11 251 2 193 297 142 26 chr12 44430786 44430941 -99355514 - MIR SINE MIR 0 262 90 699 298 119 24 chr12 44431409 44431872 -99354583 - L1ME4a LINE L1 -157 5964 5458 1969 274 120 52 chr12 44432102 44433067 -99353388 + L2 LINE L2 1594 2624 -690 1858 121 0 0 chr12 44433073 44433346 -99353109 - L1PB1 LINE L1 -97 6054 5782 297 0 0 0 chr12 44433346 44433379 -99353076 + (TA)n Simple_repeat Simple_repeat 2 34 0 219 69 0 0 chr12 44433395 44433424 -99353031 + (TG)n Simple_repeat Simple_repeat 2 30 0 241 49 0 0 chr12 44433424 44433465 -99352990 + LTR66 LTR ERVL 398 438 -172 258 32 0 0 chr12 44433466 44433497 -99352958 + (TA)n Simple_repeat Simple_repeat 1 31 0 12498 161 126 8 chr12 44433632 44436377 -99350078 - L1PBa LINE L1 -3788 3074 6 8486 234 57 34 chr12 44436397 44437471 -99348984 - L1MDa LINE L1 -844 5696 4649 12517 93 6 2 chr12 44437471 44440064 -99346391 - L1PA8 LINE L1 -4 6168 3565 8486 234 57 34 chr12 44440064 44444438 -99342017 - L1MDa LINE L1 -1891 4649 18 263 311 22 11 chr12 44445369 44445459 -99340996 - MIR3 SINE MIR -11 197 107 280 319 33 0 chr12 44445754 44445845 -99340610 - MIR SINE MIR -110 152 59 378 323 61 0 chr12 44446003 44446102 -99340353 - MER91C DNA MER1_type -35 105 1 29 0 0 0 chr12 44446387 44446416 -99340039 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr12 44447741 44447764 -99338691 + AT_rich Low_complexity Low_complexity 1 23 0 243 218 0 0 chr12 44449249 44449304 -99337151 + (CGTG)n Simple_repeat Simple_repeat 1 55 0 869 224 22 0 chr12 44450287 44450466 -99335989 - Tigger2a DNA MER2_type 0 444 262 198 91 0 0 chr12 44450466 44450499 -99335956 + (TTA)n Simple_repeat Simple_repeat 3 35 0 43887 38 3 1 chr12 44450499 44456626 -99329829 - L1PA4 LINE L1 -18 6137 1 1295 160 4 44 chr12 44456689 44456939 -99329516 - Tigger2a DNA MER2_type -194 240 1 271 216 0 0 chr12 44456943 44456994 -99329461 + MIR SINE MIR 211 261 -1 302 277 18 27 chr12 44457415 44457527 -99328928 - MLT1L LTR MaLR 0 615 505 506 266 8 0 chr12 44457715 44457839 -99328616 - MLT1L LTR MaLR -339 276 152 1107 224 36 63 chr12 44457875 44458030 -99328425 - MER58B DNA MER1_type -2094 326 168 1947 148 3 0 chr12 44458030 44458335 -99328120 - AluSx SINE Alu -6 306 1 1107 224 36 63 chr12 44458335 44458514 -99327941 - MER58B DNA MER1_type -2252 168 1 21 0 0 0 chr12 44459024 44459045 -99327410 + AT_rich Low_complexity Low_complexity 1 21 0 3299 131 37 35 chr12 44459045 44459669 -99326786 - L1MA9 LINE L1 -73 6239 5615 195 301 110 96 chr12 44459685 44459904 -99326551 - L2 LINE L2 -19 3253 3032 27 103 0 0 chr12 44460819 44460916 -99325539 + AT_rich Low_complexity Low_complexity 1 97 0 34 55 0 0 chr12 44461014 44461069 -99325386 + AT_rich Low_complexity Low_complexity 1 55 0 25 99 0 0 chr12 44461167 44461248 -99325207 + AT_rich Low_complexity Low_complexity 1 81 0 2546 42 3 0 chr12 44461635 44461942 -99324513 + AluY SINE Alu 1 308 -3 30 59 0 0 chr12 44462149 44462200 -99324255 + AT_rich Low_complexity Low_complexity 1 51 0 233 311 76 23 chr12 44462932 44463103 -99323352 + L1MDa LINE L1 1819 2028 -873 1175 277 116 19 chr12 44463490 44464119 -99322336 + L1MDa LINE L1 2536 3225 -3315 305 129 0 16 chr12 44464152 44464214 -99322241 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 11401 208 35 11 chr12 44464214 44467939 -99318516 - L1MB1 LINE L1 0 6168 2348 1282 128 36 9 chr12 44467944 44468163 -99318292 + AluSg/x SINE Alu 87 311 -1 237 162 0 0 chr12 44468163 44468200 -99318255 + Alu SINE Alu 1 37 -265 2618 256 50 45 chr12 44468249 44469857 -99316598 - L1M4c LINE L1 -3964 2599 842 212 219 0 27 chr12 44470360 44470433 -99316022 + CT-rich Low_complexity Low_complexity 2 72 0 514 274 51 34 chr12 44470626 44470801 -99315654 - MER5B DNA MER1_type 0 178 1 444 293 179 0 chr12 44470817 44470957 -99315498 + MER5A DNA MER1_type 9 173 -16 22 0 0 0 chr12 44471806 44471828 -99314627 + AT_rich Low_complexity Low_complexity 1 22 0 4786 91 9 1 chr12 44471935 44472605 -99313850 - L1PA14 LINE L1 -9 6152 5478 4704 161 7 20 chr12 44472605 44473534 -99312921 - L1PA14 LINE L1 -936 5210 4295 3671 172 5 3 chr12 44473538 44474177 -99312278 - L1PA16 LINE L1 -9 6157 5518 444 267 27 62 chr12 44474655 44474740 -99311715 - MER5B DNA MER1_type -34 144 65 2419 64 0 10 chr12 44474740 44475037 -99311418 - AluY SINE Alu -17 294 1 444 267 27 62 chr12 44475037 44475097 -99311358 - MER5B DNA MER1_type -113 65 4 213 333 56 65 chr12 44475355 44475463 -99310992 + L2 LINE L2 3109 3215 -57 1751 157 36 0 chr12 44475482 44475762 -99310693 + AluJb SINE Alu 5 294 -18 21 36 0 0 chr12 44478835 44478863 -99307592 + AT_rich Low_complexity Low_complexity 1 28 0 253 319 55 0 chr12 44478988 44479079 -99307376 + MER91C DNA MER1_type 9 104 -36 811 316 71 27 chr12 44480010 44480377 -99306078 + LTR33 LTR ERVL 44 426 -95 345 352 106 0 chr12 44480471 44480613 -99305842 + L2 LINE L2 3116 3272 0 24 0 0 0 chr12 44481707 44481731 -99304724 + AT_rich Low_complexity Low_complexity 1 24 0 797 181 0 0 chr12 44481843 44481976 -99304479 + FLAM_C SINE Alu 1 133 0 605 259 6 11 chr12 44482245 44482419 -99304036 - MER69A DNA AcHobo -2 175 3 21 36 0 0 chr12 44483165 44483193 -99303262 + AT_rich Low_complexity Low_complexity 1 28 0 312 83 0 0 chr12 44484678 44484726 -99301729 + (TC)n Simple_repeat Simple_repeat 1 48 0 351 0 0 0 chr12 44484726 44484765 -99301690 + (TG)n Simple_repeat Simple_repeat 2 40 0 462 335 141 24 chr12 44485458 44485706 -99300749 + L3 LINE CR1 1293 1569 -8 363 351 33 33 chr12 44485706 44485857 -99300598 + L2 LINE L2 3104 3254 -18 655 216 142 25 chr12 44486432 44486594 -99299861 - MER5A DNA MER1_type 0 189 9 1027 227 92 59 chr12 44486596 44487075 -99299380 - MLT1H1 LTR MaLR -7 548 9 376 308 51 0 chr12 44487377 44487494 -99298961 - MER5B DNA MER1_type -55 123 1 298 265 124 32 chr12 44488650 44488835 -99297620 - MLT1K LTR MaLR -13 575 374 410 286 53 41 chr12 44489574 44489745 -99296710 - MIR SINE MIR -56 206 34 2164 117 10 0 chr12 44491191 44491489 -99294966 - AluSq SINE Alu -12 301 1 188 340 56 28 chr12 44492078 44492222 -99294233 + L3b LINE CR1 1249 1396 -187 655 316 127 41 chr12 44493822 44494671 -99291784 - L2 LINE L2 0 3313 2395 1033 333 180 26 chr12 44495341 44496712 -99289743 - L2 LINE L2 0 3272 1705 2254 161 14 77 chr12 44497738 44498235 -99288220 + MLT1C LTR MaLR 2 467 0 3404 153 15 21 chr12 44498446 44499055 -99287400 + MER6A DNA MER2_type 1 605 0 1176 154 0 81 chr12 44500029 44500263 -99286192 - AluJb SINE Alu -15 297 83 831 200 7 0 chr12 44500460 44500610 -99285845 - AluJo SINE Alu -159 153 3 258 26 0 0 chr12 44500718 44500756 -99285699 - AluY SINE Alu -1 299 262 615 200 12 18 chr12 44500834 44501004 -99285451 + CT-rich Low_complexity Low_complexity 3 171 0 2193 185 88 29 chr12 44501435 44501476 -99284979 - MLT2B1 LTR ERVL 0 520 483 405 39 0 0 chr12 44501476 44501527 -99284928 + (TG)n Simple_repeat Simple_repeat 2 52 0 2193 185 88 29 chr12 44501527 44501976 -99284479 - MLT2B1 LTR ERVL -37 483 1 14124 146 29 4 chr12 44502575 44504934 -99281521 - Tigger1 DNA MER2_type 0 2418 1 462 259 22 30 chr12 44505238 44505373 -99281082 - L2 LINE L2 0 3313 3180 516 245 170 14 chr12 44505516 44505663 -99280792 + MER5A DNA MER1_type 11 180 -9 424 305 110 6 chr12 44505822 44505986 -99280469 + MER5A DNA MER1_type 8 188 -1 1313 140 4 48 chr12 44506138 44506367 -99280088 - MER20 DNA MER1_type 0 219 1 443 299 86 20 chr12 44507417 44507614 -99278841 + MIR SINE MIR 51 260 -2 22 0 0 0 chr12 44508137 44508159 -99278296 + AT_rich Low_complexity Low_complexity 1 22 0 41890 40 25 1 chr12 44508603 44514344 -99272111 + L1PA3 LINE L1 1 5880 -275 838 289 77 16 chr12 44514554 44514865 -99271590 + L2 LINE L2 1030 1359 -1955 2072 117 17 3 chr12 44516270 44516570 -99269885 - AluSx SINE Alu -8 304 1 289 344 26 53 chr12 44517079 44517268 -99269187 - MIR SINE MIR -61 201 18 182 194 0 0 chr12 44517434 44517470 -99268985 - L2 LINE L2 -1062 2252 2217 2373 82 3 16 chr12 44519224 44519530 -99266925 + AluY SINE Alu 1 302 -9 7638 27 0 0 chr12 44519534 44520452 -99266003 + L1PA3 LINE L1 5234 6188 0 228 54 27 0 chr12 44520452 44520489 -99265966 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 35 0 0 0 chr12 44520804 44520839 -99265616 + AT_rich Low_complexity Low_complexity 1 35 0 30 59 0 0 chr12 44521760 44521811 -99264644 + AT_rich Low_complexity Low_complexity 1 51 0 791 355 102 14 chr12 44522443 44523172 -99263283 + L2 LINE L2 1242 2034 -1280 676 268 114 5 chr12 44523172 44523392 -99263063 - LTR67 LTR ERVL 0 557 314 801 319 136 26 chr12 44523649 44524347 -99262108 + L2 LINE L2 1976 2750 -564 380 385 94 50 chr12 44524638 44525022 -99261433 + L2 LINE L2 2856 3256 -16 22 0 0 0 chr12 44525534 44525556 -99260899 + AT_rich Low_complexity Low_complexity 1 22 0 272 384 79 0 chr12 44526062 44526226 -99260229 + L2 LINE L2 2686 2862 -452 * 364 230 58 0 chr12 44526212 44526299 -99260156 + MIR3 SINE MIR 109 200 -8 190 231 21 66 chr12 44526881 44527037 -99259418 - L2 LINE L2 -4 3309 3119 259 343 0 0 chr12 44527852 44527922 -99258533 + L2 LINE L2 3244 3313 0 245 245 0 98 chr12 44527943 44528045 -99258410 + MER103 DNA DNA 73 164 -2 188 268 126 63 chr12 44528324 44528451 -99258004 - L3 LINE CR1 -157 1420 1286 2023 139 12 38 chr12 44529341 44529686 -99256769 - MER1B DNA MER1_type -1 336 1 10248 227 41 40 chr12 44530043 44534290 -99252165 - L1 LINE L1 -2593 4255 2 392 271 0 74 chr12 44534330 44534452 -99252003 + MER58A DNA MER1_type 1 113 0 261 209 0 45 chr12 44534452 44534513 -99251942 + MER58A DNA MER1_type 167 224 0 25 0 0 0 chr12 44534737 44534762 -99251693 + AT_rich Low_complexity Low_complexity 1 25 0 192 291 93 101 chr12 44534834 44535081 -99251374 - L2 LINE L2 -219 3053 2809 215 304 25 13 chr12 44535157 44535236 -99251219 + MIR3 SINE MIR 111 190 -18 279 0 0 0 chr12 44537012 44537043 -99249412 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 510 345 31 16 chr12 44539303 44539494 -99246961 - MIR3 SINE MIR -11 197 4 277 235 42 12 chr12 44539898 44540065 -99246390 + GA-rich Low_complexity Low_complexity 1 172 0 2449 213 84 26 chr12 44540340 44541034 -99245421 - MER50 LTR ERV1 0 734 1 607 243 21 14 chr12 44541270 44541414 -99245041 + MER20 DNA MER1_type 2 146 -73 333 138 12 100 chr12 44541535 44541615 -99244840 + MER20 DNA MER1_type 147 219 0 8053 82 10 9 chr12 44542263 44542968 -99243487 - L1P LINE L1 -744 5402 4694 1921 87 0 4 chr12 44542968 44543221 -99243234 - AluY SINE Alu -2 309 58 8053 82 10 9 chr12 44543221 44543675 -99242780 - L1P LINE L1 -1452 4694 4242 5813 49 3 0 chr12 44543675 44544389 -99242066 + L1PA7 LINE L1 5437 6152 -2 21 0 0 0 chr12 44544857 44544878 -99241577 + AT_rich Low_complexity Low_complexity 1 21 0 649 248 0 20 chr12 44547305 44547458 -99238997 - MLT1E LTR MaLR -443 150 1 649 280 46 23 chr12 44548494 44548712 -99237743 + MIR SINE MIR 40 262 0 2054 188 82 17 chr12 44548721 44549195 -99237260 + MLT1D LTR MaLR 1 505 0 1312 219 16 60 chr12 44550571 44550625 -99235830 - MLT1A2 LTR MaLR -2 372 317 1660 135 135 23 chr12 44550625 44550928 -99235527 - MER1B DNA MER1_type 0 337 1 1312 219 16 60 chr12 44550928 44551086 -99235369 - MLT1A2 LTR MaLR -57 317 180 300 27 0 0 chr12 44551086 44551123 -99235332 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 1312 219 16 60 chr12 44551123 44551274 -99235181 - MLT1A2 LTR MaLR -194 180 24 1929 142 17 7 chr12 44551278 44551573 -99234882 + AluSx SINE Alu 1 298 -14 191 256 85 49 chr12 44552018 44552100 -99234355 + MIR SINE MIR 67 151 -111 282 116 0 0 chr12 44552636 44552679 -99233776 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 2283 79 41 0 chr12 44552806 44552928 -99233527 + AluSx SINE Alu 1 117 -195 387 0 0 0 chr12 44552928 44552971 -99233484 + (CA)n Simple_repeat Simple_repeat 2 44 0 2283 79 41 0 chr12 44552971 44553139 -99233316 + AluSx SINE Alu 117 303 -9 198 0 0 0 chr12 44553139 44553161 -99233294 + (TA)n Simple_repeat Simple_repeat 2 23 0 321 323 0 0 chr12 44554433 44554529 -99231926 - MIR SINE MIR -114 148 53 605 269 29 17 chr12 44554840 44555015 -99231440 - MIR SINE MIR -22 240 64 1674 183 42 30 chr12 44555174 44555508 -99230947 + MER44D DNA MER2_type 1 608 -1 715 272 41 10 chr12 44555530 44555725 -99230730 + MIR SINE MIR 30 230 -32 221 326 137 0 chr12 44555755 44555850 -99230605 - L2 LINE L2 -32 3240 3133 318 337 71 12 chr12 44556052 44556221 -99230234 + MIR SINE MIR 67 245 -17 342 368 144 21 chr12 44556302 44556887 -99229568 + L2 LINE L2 2381 3036 -236 546 57 0 0 chr12 44557221 44557291 -99229164 + (TA)n Simple_repeat Simple_repeat 1 70 0 286 284 71 13 chr12 44558683 44558838 -99227617 - L1ME LINE L1 -455 5666 5503 1132 192 8 31 chr12 44558924 44558971 -99227484 - L1MB1 LINE L1 -2 6166 6119 2170 106 3 7 chr12 44558971 44559274 -99227181 - AluSx SINE Alu -10 302 1 1132 192 8 31 chr12 44559274 44559486 -99226969 - L1MB1 LINE L1 -49 6119 5913 206 319 15 108 chr12 44559765 44559877 -99226578 - MIR SINE MIR -58 204 118 2078 137 3 3 chr12 44559877 44560184 -99226271 + AluSx SINE Alu 1 307 -5 206 319 15 108 chr12 44560184 44560275 -99226180 - MIR SINE MIR -144 118 20 204 231 0 0 chr12 44560756 44560795 -99225660 + T-rich Low_complexity Low_complexity 2 40 0 482 295 62 33 chr12 44561447 44561657 -99224798 + MIR SINE MIR 34 249 -13 677 350 44 18 chr12 44561874 44562257 -99224198 - L2 LINE L2 -372 2942 2550 1283 179 73 0 chr12 44562713 44563015 -99223440 + MER33 DNA MER1_type 1 324 0 498 360 68 31 chr12 44564162 44564550 -99221905 + L2 LINE L2 2865 3264 -8 16013 83 17 0 chr12 44564563 44566917 -99219538 + L1PA7 LINE L1 3088 5481 -673 942 68 0 0 chr12 44566907 44567025 -99219430 + L1PA7 LINE L1 5811 5928 -226 * 5130 70 1 5 chr12 44567029 44567703 -99218752 + L1PA7 LINE L1 5483 6154 0 207 171 0 0 chr12 44568781 44568816 -99217639 + (TG)n Simple_repeat Simple_repeat 2 36 0 413 367 28 11 chr12 44569277 44569454 -99217001 - MIR SINE MIR -20 242 63 2104 254 38 2 chr12 44569501 44570132 -99216323 - L1M4 LINE L1 -1950 4196 3543 1018 187 25 0 chr12 44570180 44570383 -99216072 - L1PA16 LINE L1 -9 6157 5950 338 211 24 78 chr12 44570385 44570551 -99215904 - L1M4 LINE L1 -3118 3028 2872 215 79 26 0 chr12 44570616 44570654 -99215801 + (TA)n Simple_repeat Simple_repeat 2 40 0 309 303 138 50 chr12 44570990 44571208 -99215247 - L3 LINE CR1 -250 1327 1091 539 281 86 36 chr12 44571458 44571679 -99214776 + MIR SINE MIR 18 249 -13 24 0 0 0 chr12 44572557 44572581 -99213874 + AT_rich Low_complexity Low_complexity 1 24 0 302 271 28 56 chr12 44575051 44575158 -99211297 + MIR SINE MIR 30 133 -75 621 277 245 33 chr12 44575244 44575738 -99210717 - L2 LINE L2 -49 3264 2660 420 71 0 0 chr12 44576840 44576896 -99209559 + (TA)n Simple_repeat Simple_repeat 2 57 0 2335 72 3 0 chr12 44577726 44578032 -99208423 - L1PA7 LINE L1 0 6154 5848 276 260 0 14 chr12 44578565 44578667 -99207788 + (CATA)n Simple_repeat Simple_repeat 1 100 0 240 239 102 0 chr12 44579932 44580020 -99206435 - MIR SINE MIR -2 260 164 529 237 101 0 chr12 44580243 44580382 -99206073 + MER46C DNA MER2_type 79 231 -107 706 247 0 0 chr12 44580388 44580534 -99205921 - MIR SINE MIR -104 158 13 219 324 53 53 chr12 44580583 44580753 -99205702 - L2 LINE L2 -194 3078 2909 312 309 57 79 chr12 44580982 44581247 -99205208 - L2 LINE L2 -631 2683 2425 206 300 14 29 chr12 44581495 44581565 -99204890 - L2 LINE L2 0 3313 3245 214 337 47 0 chr12 44581796 44581882 -99204573 + L2 LINE L2 2393 2482 -832 205 180 20 60 chr12 44582124 44582174 -99204281 + MIR SINE MIR 197 244 -18 396 158 0 0 chr12 44582206 44582282 -99204173 + CT-rich Low_complexity Low_complexity 2 77 0 685 291 10 34 chr12 44582872 44583078 -99203377 + MIR SINE MIR 61 261 -1 2721 13 0 16 chr12 44584155 44584469 -99201986 - AluYa5 SINE Alu -2 309 1 200 61 61 0 chr12 44584771 44584804 -99201651 + GA-rich Low_complexity Low_complexity 1 35 0 508 288 198 5 chr12 44586303 44586515 -99199940 + MIR SINE MIR 10 262 0 227 310 32 70 chr12 44588683 44588841 -99197614 - L2 LINE L2 -197 3075 2924 384 303 19 39 chr12 44590077 44590232 -99196223 + MIR SINE MIR 48 199 -63 198 381 102 19 chr12 44591068 44591546 -99194909 + L2 LINE L2 541 1058 -2256 192 40 0 0 chr12 44591609 44591634 -99194821 + (T)n Simple_repeat Simple_repeat 1 25 0 1803 196 3 3 chr12 44592315 44592626 -99193829 + MER44D DNA MER2_type 1 311 -394 564 175 10 0 chr12 44592628 44592725 -99193730 + AluJ/FLAM SINE Alu 3 100 -212 195 69 0 0 chr12 44592734 44592763 -99193692 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 971 196 133 0 chr12 44592810 44592948 -99193507 + MER44D DNA MER2_type 294 412 -2075 264 59 0 0 chr12 44592948 44592982 -99193473 + (TA)n Simple_repeat Simple_repeat 2 35 0 971 196 133 0 chr12 44592982 44593068 -99193387 + MER44D DNA MER2_type 412 603 -2 27 49 0 0 chr12 44595244 44595285 -99191170 + AT_rich Low_complexity Low_complexity 1 41 0 198 250 0 118 chr12 44595854 44595930 -99190525 - MER5A DNA MER1_type 0 189 123 191 310 0 17 chr12 44595900 44595958 -99190497 + MER5A DNA MER1_type 49 105 -84 * 276 315 33 22 chr12 44596444 44596536 -99189919 + MIR SINE MIR 25 117 -145 324 358 101 14 chr12 44597012 44597230 -99189225 + L2 LINE L2 2644 2880 -434 * 333 361 57 0 chr12 44597228 44597350 -99189105 + L2 LINE L2 3144 3272 0 243 319 138 25 chr12 44597423 44597583 -99188872 - MIR3 SINE MIR -16 192 15 286 213 25 16 chr12 44597583 44597705 -99188750 + CT-rich Low_complexity Low_complexity 3 125 0 674 329 46 29 chr12 44599943 44600183 -99186272 + MIR SINE MIR 7 250 -12 23 68 0 0 chr12 44600465 44600509 -99185946 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr12 44600811 44600837 -99185618 + AT_rich Low_complexity Low_complexity 1 26 0 27 92 0 0 chr12 44600952 44601028 -99185427 + AT_rich Low_complexity Low_complexity 1 76 0 236 119 24 0 chr12 44601082 44601124 -99185331 - L1MC/D LINE L1 -1922 5886 5844 1160 271 102 63 chr12 44601545 44601569 -99184886 - L1MEd LINE L1 -910 1580 1558 2099 73 42 0 chr12 44601569 44601689 -99184766 + AluY SINE Alu 1 115 -196 464 0 0 18 chr12 44601689 44601746 -99184709 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 2099 73 42 0 chr12 44601746 44601913 -99184542 + AluY SINE Alu 115 300 -11 1160 271 102 63 chr12 44601913 44602963 -99183492 - L1MEd LINE L1 -932 1558 551 243 0 0 0 chr12 44602963 44602990 -99183465 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 270 0 0 0 chr12 44602989 44603019 -99183436 + (TG)n Simple_repeat Simple_repeat 2 31 0 1160 271 102 63 chr12 44602990 44603082 -99183373 - L1MEd LINE L1 -1939 551 319 180 0 0 0 chr12 44603690 44603710 -99182745 + (T)n Simple_repeat Simple_repeat 1 20 0 322 287 110 37 chr12 44603800 44603964 -99182491 + L3 LINE CR1 660 835 -742 253 372 44 18 chr12 44604108 44604221 -99182234 + L2 LINE L2 3141 3256 -16 * 884 315 107 42 chr12 44604212 44604800 -99181655 + L3 LINE CR1 798 1423 -154 561 277 14 79 chr12 44604976 44605144 -99181311 + MIR SINE MIR 2 147 -115 603 153 59 17 chr12 44605144 44605262 -99181193 + FLAM_C SINE Alu 1 123 -10 561 277 14 79 chr12 44605262 44605371 -99181084 + MIR SINE MIR 147 261 -1 382 283 80 27 chr12 44605385 44605560 -99180895 - MIR SINE MIR -64 144 3 2324 63 0 48 chr12 44606133 44606448 -99180007 + AluY SINE Alu 1 300 -11 3252 59 2 20 chr12 44607576 44608017 -99178438 - L1PA7 LINE L1 -5 6149 5717 615 125 0 0 chr12 44608017 44608113 -99178342 + L1P LINE L1 4668 4763 -1383 * 1868 36 0 0 chr12 44608105 44608327 -99178128 + L1P3 LINE L1 5485 5706 -448 682 204 15 15 chr12 44609013 44609150 -99177305 + MER69 DNA AcHobo 2 138 -2388 738 276 55 17 chr12 44609581 44609820 -99176635 - MIR SINE MIR -15 247 2 6425 137 16 9 chr12 44609964 44611204 -99175251 - L1MA5 LINE L1 -6 6294 5041 27 81 0 0 chr12 44611645 44611707 -99174748 + AT_rich Low_complexity Low_complexity 1 62 0 1845 95 52 4 chr12 44612210 44612489 -99173966 + AluSc SINE Alu 16 306 0 791 276 38 17 chr12 44612690 44612929 -99173526 + MIR SINE MIR 8 251 -11 1043 151 13 54 chr12 44612962 44613201 -99173254 + L1MB4 LINE L1 5951 6179 -1 2315 50 0 63 chr12 44613687 44614004 -99172451 - AluY SINE Alu -14 297 1 253 296 44 82 chr12 44614177 44614312 -99172143 + L3b LINE CR1 1446 1575 -8 216 0 0 0 chr12 44614565 44614589 -99171866 + (TA)n Simple_repeat Simple_repeat 2 25 0 2309 85 0 0 chr12 44614589 44614883 -99171572 - AluY SINE Alu -17 294 1 207 314 167 10 chr12 44614978 44615080 -99171375 - L2 LINE L2 -6 3307 3190 27 81 0 0 chr12 44615415 44615477 -99170978 + AT_rich Low_complexity Low_complexity 1 62 0 204 158 0 0 chr12 44615551 44615589 -99170866 + (TA)n Simple_repeat Simple_repeat 1 38 0 270 148 0 0 chr12 44615649 44615703 -99170752 + (TA)n Simple_repeat Simple_repeat 2 55 0 730 201 50 0 chr12 44615989 44616128 -99170327 - MER20 DNA MER1_type -34 185 40 625 283 84 65 chr12 44616217 44616359 -99170096 - L1MC4a LINE L1 -1911 5897 5759 1468 103 0 0 chr12 44616359 44616554 -99169901 - AluSq SINE Alu -118 195 1 625 283 84 65 chr12 44616554 44616782 -99169673 - L1MC4a LINE L1 -2049 5759 5520 22 0 0 0 chr12 44616811 44616833 -99169622 + AT_rich Low_complexity Low_complexity 1 22 0 1795 148 0 3 chr12 44617800 44618108 -99168347 + AluJb SINE Alu 1 307 0 289 295 164 63 chr12 44618346 44618614 -99167841 - L2 LINE L2 0 3313 3019 470 253 146 26 chr12 44618636 44618740 -99167715 + L2 LINE L2 594 684 -2630 2174 162 28 10 chr12 44618740 44619129 -99167326 - MSTD LTR MaLR 0 396 1 470 253 146 26 chr12 44619129 44619257 -99167198 + L2 LINE L2 684 854 -2460 2040 117 17 3 chr12 44620858 44621158 -99165297 - AluSx SINE Alu -8 304 1 301 363 16 47 chr12 44621667 44621857 -99164598 - MIR SINE MIR -61 201 18 184 194 0 0 chr12 44622023 44622059 -99164396 - L2 LINE L2 -1062 2252 2217 196 409 98 28 chr12 44623479 44623694 -99162761 - L2 LINE L2 -3 3269 3040 2468 61 3 16 chr12 44623815 44624127 -99162328 + AluY SINE Alu 1 308 -3 7764 16 5 0 chr12 44624127 44625044 -99161411 + L1PA3 LINE L1 5235 6155 0 186 208 0 0 chr12 44625104 44625152 -99161303 + (ATG)n Simple_repeat Simple_repeat 2 49 0 257 250 77 29 chr12 44625164 44625268 -99161187 - L2 LINE L2 -30 3242 3134 763 311 73 11 chr12 44625427 44625891 -99160564 - L2 LINE L2 -239 3033 2533 196 322 0 0 chr12 44625866 44625925 -99160530 - MIR SINE MIR -10 252 194 * 27 0 0 0 chr12 44626077 44626104 -99160351 + AT_rich Low_complexity Low_complexity 1 27 0 589 250 17 50 chr12 44626400 44626580 -99159875 - L2 LINE L2 0 3313 3140 418 332 53 24 chr12 44626666 44626874 -99159581 - L2 LINE L2 -181 3132 2919 332 248 60 27 chr12 44627048 44627197 -99159258 - HAL1b LINE L1 -335 1013 860 23 54 0 0 chr12 44627216 44627253 -99159202 + AT_rich Low_complexity Low_complexity 1 37 0 435 151 41 0 chr12 44627327 44627400 -99159055 + FLAM_A SINE Alu 1 76 -66 722 140 7 29 chr12 44627403 44627539 -99158916 + AluSg/x SINE Alu 175 307 -2 441 273 96 29 chr12 44627690 44627899 -99158556 - HAL1b LINE L1 -1036 312 90 1526 198 7 30 chr12 44629146 44629449 -99157006 + AluJo SINE Alu 3 298 -14 180 111 0 0 chr12 44629535 44629562 -99156893 + (GA)n Simple_repeat Simple_repeat 1 27 0 387 313 25 31 chr12 44629971 44630131 -99156324 - L2 LINE L2 0 3313 3155 23 0 0 0 chr12 44630866 44630889 -99155566 + AT_rich Low_complexity Low_complexity 1 23 0 4456 115 0 0 chr12 44632079 44632716 -99153739 + L1PA13 LINE L1 5525 6161 -2 271 163 33 22 chr12 44632791 44632883 -99153572 + (TA)n Simple_repeat Simple_repeat 2 94 0 2151 108 14 0 chr12 44634483 44634771 -99151684 + AluSg SINE Alu 1 292 -18 312 321 53 15 chr12 44634825 44634956 -99151499 - MIR SINE MIR -94 168 33 333 47 0 0 chr12 44635025 44635068 -99151387 + (TG)n Simple_repeat Simple_repeat 2 44 0 324 316 88 84 chr12 44635350 44635780 -99150675 + L2 LINE L2 2445 2876 -438 262 319 5 43 chr12 44635879 44635988 -99150467 - MIR SINE MIR -89 119 12 208 340 0 21 chr12 44635995 44636089 -99150366 + L2 LINE L2 2918 3009 -263 516 176 94 41 chr12 44636157 44636327 -99150128 + MER104 DNA MER2_type 1 179 -1 556 302 50 22 chr12 44636460 44636639 -99149816 - MER5A DNA MER1_type -5 184 1 205 337 168 0 chr12 44636978 44637073 -99149382 + L2 LINE L2 3122 3232 -40 24073 90 6 2 chr12 44638270 44642541 -99143914 - L1PA7 LINE L1 -4 6465 2177 4750 102 6 23 chr12 44642538 44643232 -99143223 - L1PA7 LINE L1 -5776 685 4 * 301 332 201 23 chr12 44643349 44644012 -99142443 + L2 LINE L2 1596 2376 -938 284 261 87 11 chr12 44645306 44645398 -99141057 + L2 LINE L2 3211 3309 -4 546 212 33 46 chr12 44646951 44646975 -99139480 - L1MA10 LINE L1 -4 6330 6307 825 265 4 34 chr12 44646975 44647243 -99139212 - L1ME1 LINE L1 -18 6148 5889 207 100 0 0 chr12 44647695 44647725 -99138730 + (TG)n Simple_repeat Simple_repeat 1 30 0 718 143 16 0 chr12 44647861 44647987 -99138468 - L1MA4 LINE L1 -3 6297 6170 2579 20 0 0 chr12 44648310 44648608 -99137847 - L1HS LINE L1 0 6155 5858 2534 196 43 43 chr12 44650388 44650999 -99135456 - L1MA10 LINE L1 -2 6332 5722 423 0 0 0 chr12 44650999 44651046 -99135409 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 762 153 0 0 chr12 44651047 44651158 -99135297 - AluSg/x SINE Alu -28 284 174 320 167 19 0 chr12 44651162 44651216 -99135239 + AluJb SINE Alu 117 171 -131 502 122 12 0 chr12 44651216 44651298 -99135157 - L1MA10 LINE L1 -609 5725 5643 3513 171 42 8 chr12 44651343 44652049 -99134406 - L1MA10 LINE L1 -1150 4996 4267 341 225 14 0 chr12 44652324 44652395 -99134060 - MLT1J2 LTR MaLR -378 72 1 1395 140 0 9 chr12 44653023 44653245 -99133210 - AluSg/x SINE Alu -5 307 88 245 209 104 0 chr12 44653460 44653527 -99132928 - L2 LINE L2 -9 3304 3231 514 291 34 0 chr12 44654131 44654306 -99132149 - L1ME1 LINE L1 -209 5912 5732 208 292 62 15 chr12 44656138 44656203 -99130252 + L2 LINE L2 3246 3313 0 281 212 30 0 chr12 44656221 44656287 -99130168 - MER105 DNA DNA 0 204 137 24 0 0 0 chr12 44656470 44656494 -99129961 + AT_rich Low_complexity Low_complexity 1 24 0 202 115 33 66 chr12 44656822 44656883 -99129572 + (CATAT)n Simple_repeat Simple_repeat 5 63 0 707 240 62 0 chr12 44657042 44657234 -99129221 - MER105 DNA DNA 0 204 1 229 235 148 40 chr12 44657259 44657408 -99129047 - HAL1 LINE L1 -178 2329 2165 459 283 17 73 chr12 44657857 44658034 -99128421 - MLT2E LTR ERVL -451 177 11 880 281 121 18 chr12 44658074 44658506 -99127949 - L2 LINE L2 -544 2770 2238 629 181 133 64 chr12 44658513 44658701 -99127754 - MLT1C LTR MaLR 0 467 267 466 237 9 9 chr12 44658758 44658872 -99127583 + MLT2E LTR ERVL 515 628 0 508 204 79 73 chr12 44658917 44659129 -99127326 - MLT1C LTR MaLR -243 224 1 683 263 43 30 chr12 44659171 44659403 -99127052 - L2 LINE L2 -1104 2210 1976 615 320 35 18 chr12 44659603 44659831 -99126624 + MIR SINE MIR 2 233 -29 594 304 32 68 chr12 44659858 44660312 -99126143 - HAL1 LINE L1 -1135 1372 944 2377 85 0 19 chr12 44660312 44660629 -99125826 - AluY SINE Alu 0 311 1 594 304 32 68 chr12 44660629 44660793 -99125662 - HAL1 LINE L1 -1563 944 776 216 341 83 15 chr12 44661735 44661867 -99124588 - L2 LINE L2 -4 3309 3169 313 210 208 7 chr12 44661895 44662031 -99124424 + L1ME1 LINE L1 6015 6334 0 439 272 156 42 chr12 44662034 44662228 -99124227 + L1M4 LINE L1 4399 4570 -1576 282 73 0 0 chr12 44662228 44662269 -99124186 + (TTTTG)n Simple_repeat Simple_repeat 4 44 0 439 272 156 42 chr12 44662269 44662434 -99124021 + L1M4 LINE L1 4570 4799 -1347 220 359 12 53 chr12 44662515 44662685 -99123770 - L2 LINE L2 -194 3078 2916 209 217 0 0 chr12 44664530 44664576 -99121879 + T-rich Low_complexity Low_complexity 1 46 0 207 0 0 0 chr12 44664579 44664602 -99121853 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 25 0 0 0 chr12 44666046 44666071 -99120384 + AT_rich Low_complexity Low_complexity 1 25 0 351 279 48 39 chr12 44666100 44666204 -99120251 + L2 LINE L2 3168 3272 0 230 250 0 18 chr12 44666214 44666270 -99120185 + Tigger5 DNA MER2_type 1 55 -2268 * 433 219 48 0 chr12 44666257 44666362 -99120093 + Tigger5 DNA MER2_type 2210 2319 -4 908 236 89 43 chr12 44668293 44668619 -99117836 - MLT1I LTR MaLR -68 341 1 246 370 12 0 chr12 44670479 44670560 -99115895 + L2 LINE L2 1149 1230 -2084 188 171 98 0 chr12 44670562 44670603 -99115852 + L2 LINE L2 1201 1245 -2069 1534 194 111 90 chr12 44670604 44671135 -99115320 - MLT1F1 LTR MaLR 0 567 1 3071 273 112 52 chr12 44671136 44673028 -99113427 + L2 LINE L2 1243 3308 -5 2608 35 0 16 chr12 44673466 44673780 -99112675 - AluY SINE Alu -1 310 2 23 33 0 0 chr12 44673812 44673842 -99112613 + AT_rich Low_complexity Low_complexity 1 30 0 287 340 62 45 chr12 44674698 44674986 -99111469 + L2 LINE L2 2235 2527 -787 737 289 40 18 chr12 44675051 44675276 -99111179 + MIR SINE MIR 2 231 -31 392 353 79 41 chr12 44675310 44675678 -99110777 + L2 LINE L2 2595 2976 -338 431 243 68 51 chr12 44675736 44675913 -99110542 - L2 LINE L2 -1258 2056 1877 22 0 0 0 chr12 44676655 44676677 -99109778 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr12 44676728 44676749 -99109706 + AT_rich Low_complexity Low_complexity 1 21 0 1134 234 77 22 chr12 44678330 44678731 -99107724 - L1ME1 LINE L1 -4 6162 5740 201 74 0 0 chr12 44679339 44679366 -99107089 + (TG)n Simple_repeat Simple_repeat 2 28 0 2351 15 0 0 chr12 44680047 44680308 -99106147 - AluYa5 SINE Alu -14 297 37 2507 63 0 3 chr12 44683048 44683347 -99103108 + AluY SINE Alu 1 298 -13 234 281 62 16 chr12 44683756 44683820 -99102635 - L2 LINE L2 -39 3233 3167 876 172 0 0 chr12 44683856 44684013 -99102442 - MER3 DNA MER1_type -4 205 49 679 158 53 0 chr12 44684014 44684147 -99102308 - MSTA LTR MaLR 0 428 289 438 20 0 0 chr12 44684171 44684222 -99102233 + (GA)n Simple_repeat Simple_repeat 1 51 0 42 20 0 0 chr12 44684530 44684579 -99101876 + AT_rich Low_complexity Low_complexity 1 49 0 651 239 94 0 chr12 44684777 44684915 -99101540 + FRAM SINE Alu 1 151 -15 22 0 0 0 chr12 44685050 44685072 -99101383 + AT_rich Low_complexity Low_complexity 1 22 0 228 271 72 30 chr12 44685232 44685398 -99101057 + L1ME LINE L1 5628 5800 -321 22 35 0 0 chr12 44685487 44685516 -99100939 + AT_rich Low_complexity Low_complexity 1 29 0 393 21 0 0 chr12 44685516 44685564 -99100891 + L1PA6 LINE L1 6102 6149 -5 470 287 55 10 chr12 44685950 44686188 -99100267 - L1ME2 LINE L1 -2 6160 5888 * 868 274 48 19 chr12 44686180 44686879 -99099576 - L1ME LINE L1 -3709 2371 1665 1579 120 37 91 chr12 44686888 44687238 -99099217 - MER44D DNA MER2_type -8 601 1 1763 270 50 27 chr12 44687238 44688299 -99098156 - L1ME LINE L1 -4595 1666 536 5274 148 36 11 chr12 44688481 44689801 -99096654 - L1MA5 LINE L1 0 6300 4954 608 308 102 9 chr12 44689954 44690298 -99096157 - L1ME LINE L1 -5653 417 42 771 294 18 13 chr12 44691164 44691392 -99095063 + MIR SINE MIR 22 250 -12 298 346 99 40 chr12 44691626 44691810 -99094645 + L2 LINE L2 2921 3093 -220 1582 197 24 53 chr12 44691810 44692186 -99094269 - MLT1A1 LTR MaLR 0 365 1 298 346 99 40 chr12 44692186 44692354 -99094101 + L2 LINE L2 3093 3294 -19 981 272 80 38 chr12 44693479 44693979 -99092476 + LTR33 LTR ERVL 1 521 0 24 91 0 0 chr12 44694039 44694105 -99092350 + AT_rich Low_complexity Low_complexity 1 66 0 23 0 0 0 chr12 44694249 44694272 -99092183 + AT_rich Low_complexity Low_complexity 1 23 0 252 0 0 0 chr12 44694702 44694730 -99091725 + (TG)n Simple_repeat Simple_repeat 2 29 0 249 33 0 0 chr12 44695285 44695315 -99091140 + (A)n Simple_repeat Simple_repeat 1 30 0 737 254 151 57 chr12 44696599 44697216 -99089239 - L2 LINE L2 -102 3211 2567 360 282 48 68 chr12 44697301 44697549 -99088906 + L1ME3A LINE L1 4605 4847 -1299 24 32 0 0 chr12 44697675 44697706 -99088749 + AT_rich Low_complexity Low_complexity 1 31 0 282 56 0 0 chr12 44697751 44697787 -99088668 + (TA)n Simple_repeat Simple_repeat 2 37 0 349 263 67 17 chr12 44697795 44698040 -99088415 + L1ME3A LINE L1 5290 5538 -618 843 186 62 5 chr12 44698137 44698330 -99088125 - MER3 DNA MER1_type 0 209 6 511 209 104 11 chr12 44698355 44698537 -99087918 + L1ME3A LINE L1 5683 5881 -289 2541 173 209 70 chr12 44698537 44699650 -99086805 + LTR12 LTR ERV1 1 692 -22 1425 231 33 56 chr12 44699648 44700215 -99086240 - pTR5 LTR ERV1 -2046 392 67 * 327 228 11 0 chr12 44700215 44700307 -99086148 - LTR30 LTR ERV1 -79 643 551 5563 160 60 57 chr12 44700307 44701593 -99084862 - pTR5 LTR ERV1 -406 2032 743 988 68 95 0 chr12 44701593 44701740 -99084715 + LTR12 LTR ERV1 554 714 0 29 60 0 0 chr12 44701774 44701824 -99084631 + AT_rich Low_complexity Low_complexity 1 50 0 200 216 29 39 chr12 44702060 44702162 -99084293 + (TA)n Simple_repeat Simple_repeat 2 102 0 266 281 91 45 chr12 44702703 44702945 -99083510 - L1ME LINE L1 -557 5564 5312 206 289 74 95 chr12 44703144 44703334 -99083121 - L3 LINE CR1 -114 1463 1278 228 385 18 0 chr12 44703380 44703489 -99082966 - L3 LINE CR1 -424 1153 1043 827 242 54 0 chr12 44704554 44704740 -99081715 - MER58A DNA MER1_type -27 197 2 504 248 66 0 chr12 44705295 44705432 -99081023 + MIR SINE MIR 117 262 0 273 264 0 11 chr12 44705636 44705723 -99080732 - MER117 DNA MER1_type -31 166 81 423 149 35 11 chr12 44706088 44706175 -99080280 + MSTA LTR MaLR 1 89 -339 3663 152 14 66 chr12 44706182 44706999 -99079456 + LTR1 LTR ERV1 12 785 0 2237 129 9 0 chr12 44706999 44707339 -99079116 + MSTA LTR MaLR 86 428 0 357 200 0 0 chr12 44708415 44708490 -99077965 + MLT1J2 LTR MaLR 352 426 -24 607 250 50 6 chr12 44709681 44709841 -99076614 + MLT1J2 LTR MaLR 1 167 -283 1521 225 54 58 chr12 44709902 44710422 -99076033 + Cheshire DNA MER1_type 30 547 -1873 1410 224 133 33 chr12 44710422 44710881 -99075574 + MLT1D LTR MaLR 1 505 0 * 6242 196 67 72 chr12 44710881 44712202 -99074253 + Cheshire DNA MER1_type 565 1877 -543 2326 82 0 7 chr12 44712202 44712531 -99073924 - AluY SINE Alu 0 311 1 6242 196 67 72 chr12 44712531 44713073 -99073382 + Cheshire DNA MER1_type 1877 2420 0 414 276 63 35 chr12 44713091 44713265 -99073190 + MLT1J2 LTR MaLR 272 450 0 29 28 0 0 chr12 44713945 44713981 -99072474 + AT_rich Low_complexity Low_complexity 1 36 0 243 286 75 68 chr12 44714032 44714165 -99072290 - MER5A DNA MER1_type 0 189 56 205 278 10 113 chr12 44715014 44715111 -99071344 + L2 LINE L2 3187 3273 -40 316 242 116 11 chr12 44716483 44716578 -99069877 - L2 LINE L2 0 3272 3168 2700 107 8 5 chr12 44716786 44717160 -99069295 + THE1C LTR MaLR 1 375 0 9436 120 50 40 chr12 44717160 44718725 -99067730 + THE1C-int LTR MaLR 1 1580 0 2480 132 11 3 chr12 44718725 44719097 -99067358 + THE1C LTR MaLR 1 375 0 3419 206 57 16 chr12 44719191 44719940 -99066515 + L1M1 LINE L1 8 787 -6778 13364 114 1 6 chr12 44719961 44721912 -99064543 - HUERS-P3 LTR ERV1 -2748 6171 4230 10786 156 5 14 chr12 44721918 44724442 -99062013 - HUERS-P3 LTR ERV1 -4944 3975 1107 218 344 0 0 chr12 44724694 44724758 -99061697 + C-rich Low_complexity Low_complexity 3 66 0 266 293 50 14 chr12 44725398 44725538 -99060917 - L1ME LINE L1 -338 5832 5688 843 291 51 23 chr12 44725539 44726248 -99060207 - L1ME LINE L1 -2298 3848 3120 6090 137 23 43 chr12 44726379 44727468 -99058987 - HUERS-P3 LTR ERV1 -7838 1081 15 4227 123 10 5 chr12 44727483 44728092 -99058363 - LTR9 LTR ERV1 0 612 1 2823 221 3 14 chr12 44728101 44728668 -99057787 + L1M1 LINE L1 1273 1833 -5732 * 5050 107 34 50 chr12 44728660 44729174 -99057281 + L1M1 LINE L1 2247 2737 -4828 1699 111 8 8 chr12 44729174 44729409 -99057046 + AluSq SINE Alu 1 235 -78 5050 107 34 50 chr12 44729409 44729908 -99056547 + L1M1 LINE L1 2737 3243 -4322 1143 130 0 0 chr12 44729907 44730099 -99056356 + L1PA13 LINE L1 1934 2125 -4662 * 4584 186 11 8 chr12 44730103 44731065 -99055390 + L1PA13 LINE L1 2326 3290 -3507 3861 71 0 4 chr12 44731066 44731153 -99055302 + L1PA13 LINE L1 5421 5507 -656 3861 123 2 2 chr12 44731153 44731732 -99054723 + L1PA13 LINE L1 5566 6144 -19 3861 71 0 4 chr12 44731732 44731747 -99054708 + L1PA13 LINE L1 5507 6144 -19 2333 124 10 7 chr12 44731745 44732149 -99054306 + L1M1 LINE L1 3221 3625 -3940 * 1054 219 54 27 chr12 44732155 44732489 -99053966 + L1M1 LINE L1 3732 4074 -3491 341 91 0 18 chr12 44732873 44732928 -99053527 + (TA)n Simple_repeat Simple_repeat 2 55 0 318 200 0 100 chr12 44732990 44733090 -99053365 + L1MC4 LINE L1 6614 6703 -1339 2219 89 13 10 chr12 44733109 44733422 -99053033 - L1PA8 LINE L1 -12 6160 5847 29 47 0 0 chr12 44733656 44733699 -99052756 + AT_rich Low_complexity Low_complexity 1 43 0 247 301 87 39 chr12 44733902 44734005 -99052450 - MIR3 SINE MIR -52 156 49 1782 148 44 35 chr12 44734277 44734447 -99052008 + MER7A DNA MER2_type 1 168 -2870 2195 169 44 7 chr12 44734447 44734860 -99051595 - MSTA LTR MaLR 0 428 1 8565 176 36 14 chr12 44734860 44736475 -99049980 - MSTA-int LTR MaLR 0 1651 1 2614 136 29 7 chr12 44736475 44736894 -99049561 - MSTA LTR MaLR 0 428 1 1782 148 44 35 chr12 44736894 44737065 -99049390 + MER7A DNA MER2_type 167 345 -1 26 50 0 0 chr12 44737262 44737302 -99049153 + AT_rich Low_complexity Low_complexity 1 40 0 212 267 43 43 chr12 44737322 44737438 -99049017 + L2 LINE L2 2454 2569 -745 1388 198 86 46 chr12 44737446 44737841 -99048614 + LTR52 LTR ERVL 8 418 -3 1020 290 45 55 chr12 44737841 44738518 -99047937 + L2 LINE L2 2570 3240 -73 457 329 92 4 chr12 44740093 44740342 -99046113 - L1MEc LINE L1 -3679 2536 2266 377 263 91 0 chr12 44740521 44740719 -99045736 - L1MEc LINE L1 -4921 1475 1260 27 0 0 0 chr12 44741052 44741079 -99045376 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr12 44741667 44741688 -99044767 + AT_rich Low_complexity Low_complexity 1 21 0 1058 83 28 5 chr12 44741876 44742094 -99044361 + (TTTC)n Simple_repeat Simple_repeat 1 222 0 340 267 281 7 chr12 44742421 44742567 -99043888 - MIR SINE MIR -14 248 63 484 319 17 0 chr12 44743369 44743485 -99042970 - L2 LINE L2 0 3272 3155 196 213 85 0 chr12 44744117 44744164 -99042291 - MIR SINE MIR 0 262 212 322 282 87 0 chr12 44744344 44744447 -99042008 + MIR3 SINE MIR 82 193 -15 463 267 75 113 chr12 44745803 44746298 -99040157 + L2 LINE L2 2838 3313 0 1915 165 117 7 chr12 44746574 44746993 -99039462 - MLT1C LTR MaLR -2 465 1 1511 153 68 6 chr12 44747172 44747493 -99038962 - MER34B LTR ERV1 -5 560 220 2770 82 92 5 chr12 44747495 44747907 -99038548 - LTR7 LTR ERV1 -2 448 1 2249 96 48 13 chr12 44747907 44748284 -99038171 - HERVH LTR ERV1 0 7713 7324 1215 120 17 73 chr12 44748284 44748517 -99037938 - HERVH LTR ERV1 -1894 5819 5600 7371 124 13 7 chr12 44748518 44750230 -99036225 - HERVH LTR ERV1 -2564 5149 3492 936 120 7 0 chr12 44750220 44750370 -99036085 - HERVH LTR ERV1 -4423 3290 3140 * 13974 95 13 20 chr12 44750364 44752575 -99033880 - HERVH LTR ERV1 -4726 2987 793 2913 98 2 21 chr12 44752629 44753097 -99033358 - HERVH LTR ERV1 -7254 459 1 2612 92 102 15 chr12 44753099 44753511 -99032944 - LTR7 LTR ERV1 -2 448 1 1398 148 5 0 chr12 44753511 44753734 -99032721 - MER34B LTR ERV1 -341 224 1 190 328 82 0 chr12 44753749 44753810 -99032645 - L2 LINE L2 -61 3211 3146 213 132 0 0 chr12 44754468 44754506 -99031949 + (GA)n Simple_repeat Simple_repeat 1 38 0 26 64 0 0 chr12 44755258 44755305 -99031150 + AT_rich Low_complexity Low_complexity 1 47 0 28 0 0 0 chr12 44755813 44755841 -99030614 + AT_rich Low_complexity Low_complexity 1 28 0 421 331 37 57 chr12 44755852 44756097 -99030358 - L1MEd LINE L1 -5311 808 569 1583 174 24 30 chr12 44756097 44756395 -99030060 - AluJb SINE Alu -16 296 1 262 252 52 43 chr12 44756733 44756848 -99029607 - L1MEd LINE L1 -5953 166 51 215 299 10 72 chr12 44757318 44757415 -99029040 - L2 LINE L2 -14 3258 3168 1036 116 0 0 chr12 44758109 44758256 -99028199 - AluSc SINE Alu -3 306 160 327 255 55 62 chr12 44759312 44759457 -99026998 - MIR SINE MIR -57 205 62 276 250 48 8 chr12 44760266 44760390 -99026065 + (TA)n Simple_repeat Simple_repeat 2 130 0 21 0 0 0 chr12 44760426 44760447 -99026008 + AT_rich Low_complexity Low_complexity 1 21 0 199 292 0 0 chr12 44761692 44761740 -99024715 + MIR SINE MIR 99 146 -116 27 0 0 0 chr12 44761840 44761867 -99024588 + AT_rich Low_complexity Low_complexity 1 27 0 320 287 28 28 chr12 44763477 44763585 -99022870 - L2 LINE L2 -2 3311 3204 1486 230 25 6 chr12 44763681 44764037 -99022418 - MLT1A2 LTR MaLR -11 363 1 350 295 110 17 chr12 44764042 44764215 -99022240 - L2 LINE L2 -194 3119 2931 294 311 175 6 chr12 44764265 44764442 -99022013 - L2 LINE L2 -711 2603 2397 591 293 32 59 chr12 44764764 44765017 -99021438 - MIR SINE MIR -3 259 14 215 239 0 56 chr12 44765445 44765516 -99020939 - L2 LINE L2 0 3313 3247 180 0 0 0 chr12 44765634 44765654 -99020801 + (T)n Simple_repeat Simple_repeat 1 20 0 1632 176 108 35 chr12 44766453 44766879 -99019576 - MSTB2 LTR MaLR 0 457 1 901 166 6 0 chr12 44767461 44767636 -99018819 - L1MA3 LINE L1 0 6305 6130 4491 114 6 5 chr12 44767664 44768333 -99018122 - L1PA16 LINE L1 0 6166 5497 459 125 0 38 chr12 44768333 44768413 -99018042 - L1PA15-16 LINE L1 -5237 1612 1536 1625 149 98 3 chr12 44768420 44768716 -99017739 - MSTB LTR MaLR -102 324 1 1649 149 12 19 chr12 44769625 44769946 -99016509 + L1PA16 LINE L1 5825 6142 -24 373 297 135 43 chr12 44770043 44770228 -99016227 + MIR SINE MIR 5 206 -56 719 329 58 51 chr12 44770908 44771497 -99014958 + HAL1 LINE L1 1072 1664 -843 1797 234 34 28 chr12 44771810 44772311 -99014144 + MLT1D LTR MaLR 1 504 -1 233 102 68 0 chr12 44772313 44772372 -99014083 + (TA)n Simple_repeat Simple_repeat 2 64 0 366 87 130 0 chr12 44772373 44772442 -99014013 - L1PA12 LINE L1 -13 6155 6078 210 136 68 17 chr12 44772459 44772477 -99013978 + (TA)n Simple_repeat Simple_repeat 2 18 -45 559 45 0 0 chr12 44772477 44772544 -99013911 - L1PA7 LINE L1 -17 6137 6071 210 136 68 17 chr12 44772544 44772584 -99013871 + (TA)n Simple_repeat Simple_repeat 18 63 0 198 0 0 0 chr12 44772584 44772606 -99013849 + (CA)n Simple_repeat Simple_repeat 2 23 0 3379 294 108 16 chr12 44772637 44774121 -99012334 + L2 LINE L2 664 2285 -1029 547 335 48 13 chr12 44774124 44774351 -99012104 + L2 LINE L2 2428 2662 -652 426 212 220 23 chr12 44774427 44774559 -99011896 + MER5A DNA MER1_type 30 187 -2 818 292 148 10 chr12 44774638 44775022 -99011433 + L2 LINE L2 2869 3305 -8 1877 195 139 79 chr12 44775312 44776234 -99010221 - L1ME2 LINE L1 -14 6150 5160 452 293 6 33 chr12 44776897 44777078 -99009377 - L2 LINE L2 -4 3309 3134 363 312 41 24 chr12 44777390 44777560 -99008895 - MIR SINE MIR -10 252 80 1265 239 128 38 chr12 44779511 44779988 -99006467 - MLT2B1 LTR ERVL 0 520 1 295 349 108 28 chr12 44780115 44780439 -99006016 - L2 LINE L2 -2 3311 2962 * 993 279 71 52 chr12 44780436 44780898 -99005557 - L2 LINE L2 -1 3312 2842 192 265 20 0 chr12 44780950 44780999 -99005456 - MIR SINE MIR -65 197 148 1037 235 47 24 chr12 44781085 44781340 -99005115 + MIR SINE MIR 1 261 -1 37 52 0 0 chr12 44782371 44782429 -99004026 + AT_rich Low_complexity Low_complexity 1 58 0 251 341 82 7 chr12 44782670 44782805 -99003650 - L2 LINE L2 -960 2354 2210 734 159 8 8 chr12 44782939 44783057 -99003398 - MIR SINE MIR -57 205 85 246 62 0 0 chr12 44783057 44783089 -99003366 + (CA)n Simple_repeat Simple_repeat 1 32 0 2457 46 0 0 chr12 44783174 44783520 -99002935 - AluY SINE Alu 0 346 1 3465 239 81 4 chr12 44784076 44785146 -99001309 + L1PA15 LINE L1 3496 4649 -2916 5500 122 13 7 chr12 44785149 44785984 -99000471 + L1PA15 LINE L1 5321 6160 -5 * 6525 217 13 17 chr12 44785981 44787023 -98999432 + L1PA15 LINE L1 4694 5730 -1835 2500 89 0 9 chr12 44787023 44787371 -98999084 - L1PA8 LINE L1 0 6172 5828 6525 217 13 17 chr12 44787371 44787850 -98998605 + L1PA15 LINE L1 5730 6209 -1356 1828 166 12 12 chr12 44787849 44788193 -98998262 + L1PA15 LINE L1 6790 7133 -451 * 2533 165 5 2 chr12 44788249 44788691 -98997764 + L1PA15 LINE L1 7135 7577 -7 3236 286 103 25 chr12 44788695 44790587 -98995868 - L1MCb LINE L1 -866 5698 3660 762 177 64 18 chr12 44790587 44790915 -98995540 + MSTC LTR MaLR 1 428 0 2130 260 80 18 chr12 44790916 44791829 -98994626 - L1MCb LINE L1 -2901 3663 2694 256 188 0 29 chr12 44791829 44791898 -98994557 + MER4-int LTR ERV1 1114 1180 -5418 467 165 0 22 chr12 44791914 44792005 -98994450 + MLT1A2 LTR MaLR 286 374 0 334 185 131 62 chr12 44792006 44792136 -98994319 - L1MCb LINE L1 -4010 2554 2416 3668 207 93 142 chr12 44792141 44794161 -98992294 - L1MCb LINE L1 -4499 2065 3 1650 169 11 18 chr12 44794200 44794518 -98991937 - AluSx SINE Alu 0 316 1 231 269 154 19 chr12 44794961 44795065 -98991390 + MER5A DNA MER1_type 16 133 -56 295 303 204 43 chr12 44795254 44795847 -98990608 - L2 LINE L2 -81 3191 2500 180 0 0 0 chr12 44795861 44795881 -98990574 + (A)n Simple_repeat Simple_repeat 1 20 0 1585 176 17 35 chr12 44795893 44796183 -98990272 + AluJo SINE Alu 7 291 -21 2490 54 0 3 chr12 44796659 44796954 -98989501 - AluY SINE Alu -15 296 3 439 306 73 10 chr12 44798015 44798221 -98988234 + MIR SINE MIR 37 255 -7 201 224 0 0 chr12 44798889 44798947 -98987508 + (TTCA)n Simple_repeat Simple_repeat 4 61 0 227 79 26 0 chr12 44799165 44799203 -98987252 + (TG)n Simple_repeat Simple_repeat 2 40 0 2734 351 44 34 chr12 44800308 44801244 -98985211 - ERVL LTR ERVL -1798 3966 3040 2285 107 72 17 chr12 44801244 44801589 -98984866 + THE1B LTR MaLR 1 364 0 2734 351 44 34 chr12 44801589 44802544 -98983911 - ERVL LTR ERVL -2724 3040 2057 491 191 76 70 chr12 44802571 44802865 -98983590 + MSTC LTR MaLR 1 345 -83 682 288 49 15 chr12 44802902 44803166 -98983289 - ERVL LTR ERVL -3131 1865 1593 272 325 0 0 chr12 44803380 44803457 -98982998 - ERVL LTR ERVL -3234 2530 2454 * 352 320 16 0 chr12 44803455 44803583 -98982872 - ERVL LTR ERVL -3689 1307 1178 541 285 70 17 chr12 44803587 44803759 -98982696 - LTR16A LTR ERVL -269 181 1 404 291 32 38 chr12 44804290 44804448 -98982007 + L2 LINE L2 2685 2841 -473 566 130 23 30 chr12 44804469 44804600 -98981855 - L1MA7 LINE L1 -1 6290 6161 219 146 0 0 chr12 44805442 44805483 -98980972 + (A)n Simple_repeat Simple_repeat 1 41 0 2271 101 16 0 chr12 44806683 44806990 -98979465 - AluSx SINE Alu 0 312 1 294 272 66 66 chr12 44807489 44807625 -98978830 + MER5B DNA MER1_type 2 137 -41 1028 282 93 19 chr12 44807627 44808003 -98978452 + MLT1J2 LTR MaLR 12 415 -35 331 307 87 55 chr12 44808041 44808295 -98978160 - L2 LINE L2 -563 2751 2490 456 259 20 80 chr12 44809966 44810167 -98976288 + MIR SINE MIR 33 221 -41 2108 28 0 0 chr12 44810790 44811039 -98975416 + L1PA4 LINE L1 5907 6155 0 218 200 0 0 chr12 44811039 44811079 -98975376 + (CCAA)n Simple_repeat Simple_repeat 2 41 0 29 47 0 0 chr12 44812887 44812930 -98973525 + AT_rich Low_complexity Low_complexity 1 43 0 297 0 0 0 chr12 44813329 44813362 -98973093 + (TG)n Simple_repeat Simple_repeat 2 34 0 30 59 0 0 chr12 44816198 44816249 -98970206 + AT_rich Low_complexity Low_complexity 1 51 0 27 0 0 0 chr12 44816415 44816442 -98970013 + AT_rich Low_complexity Low_complexity 1 27 0 190 114 0 57 chr12 44816463 44816498 -98969957 + MIR SINE MIR 146 178 -84 530 265 122 16 chr12 44816772 44816961 -98969494 + MIR SINE MIR 53 261 -1 959 180 12 0 chr12 44817947 44818108 -98968347 - AluJ SINE Alu -14 298 136 386 339 55 12 chr12 44818391 44818556 -98967899 + MIR3 SINE MIR 23 194 -14 310 231 90 30 chr12 44818593 44818727 -98967728 + MIR SINE MIR 121 262 0 350 237 0 65 chr12 44819507 44819600 -98966855 + MIR3 SINE MIR 119 205 -3 257 327 73 18 chr12 44820962 44821072 -98965383 + L2 LINE L2 3147 3262 -10 793 263 31 0 chr12 44822836 44823031 -98963424 - MIR SINE MIR -15 247 43 447 289 33 22 chr12 44823486 44823666 -98962789 + MER5A DNA MER1_type 8 189 0 1046 142 0 0 chr12 44824200 44824348 -98962107 - AluJ SINE Alu -24 288 141 491 91 26 0 chr12 44824351 44824428 -98962027 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 742 185 15 0 chr12 44824430 44824560 -98961895 - AluJ SINE Alu -170 132 1 419 293 16 16 chr12 44824711 44824834 -98961621 + MER5A DNA MER1_type 37 159 -30 570 295 12 0 chr12 44825044 44825210 -98961245 + MER69A DNA AcHobo 8 175 -2 327 294 28 72 chr12 44826442 44826622 -98959833 + MLT1J2 LTR MaLR 59 230 -220 377 302 77 12 chr12 44826628 44826797 -98959658 + MLT1J1 LTR MaLR 264 443 -3 258 32 0 0 chr12 44828522 44828553 -98957902 + (TAA)n Simple_repeat Simple_repeat 2 32 0 426 39 0 0 chr12 44828893 44828945 -98957510 + (CA)n Simple_repeat Simple_repeat 1 52 0 2374 103 0 0 chr12 44829480 44829790 -98956665 + AluSx SINE Alu 1 310 -2 349 299 140 27 chr12 44830456 44830554 -98955901 - MIR SINE MIR -15 247 161 706 134 8 0 chr12 44830554 44830673 -98955782 - L1MA9 LINE L1 -10 6302 6183 349 299 140 27 chr12 44830673 44830795 -98955660 - MIR SINE MIR -101 161 2 183 129 0 0 chr12 44830934 44830965 -98955490 + (T)n Simple_repeat Simple_repeat 1 31 0 518 236 115 32 chr12 44832570 44832727 -98953728 + L2 LINE L2 3144 3313 0 2036 112 0 30 chr12 44832763 44833059 -98953396 + AluSx SINE Alu 20 306 -6 187 333 11 46 chr12 44835116 44835203 -98951252 + L3 LINE CR1 1493 1576 -1 808 297 50 21 chr12 44835219 44835596 -98950859 - L2 LINE L2 -102 3211 2824 * 2026 272 138 16 chr12 44835569 44836417 -98950038 - L2 LINE L2 -636 2678 1728 656 13 0 0 chr12 44837711 44837809 -98948646 + L1PA5 LINE L1 6061 6158 0 473 285 120 20 chr12 44837865 44838065 -98948390 - MIR SINE MIR -6 256 37 23 54 0 0 chr12 44838975 44839012 -98947443 + AT_rich Low_complexity Low_complexity 1 37 0 477 338 26 30 chr12 44840205 44840439 -98946016 - MIR SINE MIR 0 262 30 1167 118 0 53 chr12 44840543 44840730 -98945725 + AluSg/x SINE Alu 134 310 0 378 279 172 45 chr12 44841013 44841257 -98945198 - L2 LINE L2 -5 3308 3034 286 347 58 33 chr12 44841565 44841686 -98944769 - L2 LINE L2 -31 3241 3118 414 257 73 15 chr12 44841981 44842117 -98944338 - L2 LINE L2 -6 3307 3164 2009 116 46 0 chr12 44842979 44843263 -98943192 - AluSx SINE Alu -15 297 1 358 289 150 26 chr12 44843840 44844186 -98942269 + L1ME4a LINE L1 5605 5993 -128 207 285 172 26 chr12 44845050 44845201 -98941254 - L3 LINE CR1 -3 1574 1402 22 35 0 0 chr12 44845204 44845233 -98941222 + AT_rich Low_complexity Low_complexity 1 29 0 4695 127 17 5 chr12 44845233 44845981 -98940474 - L1PA16 LINE L1 -9 6157 5401 206 284 17 86 chr12 44845994 44846110 -98940345 - L3 LINE CR1 -168 1409 1302 362 341 123 49 chr12 44846126 44846922 -98939533 - L2 LINE L2 0 3272 2409 30 0 0 0 chr12 44848734 44848764 -98937691 + AT_rich Low_complexity Low_complexity 1 30 0 4014 25 0 0 chr12 44848764 44849240 -98937215 - L1PA4 LINE L1 -2029 4117 3642 10623 23 1 0 chr12 44849240 44851259 -98935196 + L1PA4 LINE L1 4125 6149 -6 233 0 62 0 chr12 44851265 44851297 -98935158 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 969 70 0 0 chr12 44851308 44851436 -98935019 - L1MA2 LINE L1 -4 6300 6173 6521 118 36 4 chr12 44851917 44853282 -98933173 + L1MA2 LINE L1 4868 6276 -28 237 98 0 0 chr12 44853334 44853375 -98933080 + L1MA3 LINE L1 6265 6305 0 390 326 69 14 chr12 44853652 44853796 -98932659 + L2 LINE L2 3121 3272 0 318 325 53 9 chr12 44855615 44855729 -98930726 - MER5B DNA MER1_type -52 126 8 286 264 23 23 chr12 44857546 44857633 -98928822 + MIR3 SINE MIR 117 203 -5 328 239 73 101 chr12 44858003 44858221 -98928234 - MIR SINE MIR -44 218 7 663 270 17 6 chr12 44859077 44859251 -98927204 - MER45A DNA AcHobo -2 176 1 1482 177 16 7 chr12 44859812 44860117 -98926338 - L1MB3 LINE L1 -2 6181 5874 1059 98 0 0 chr12 44860308 44860441 -98926014 + AluSx SINE Alu 1 133 -179 906 130 9 126 chr12 44860482 44860697 -98925758 + AluSx SINE Alu 112 301 -9 2197 180 27 66 chr12 44861977 44862259 -98924196 + L1PB4 LINE L1 5684 5975 -326 1586 179 35 41 chr12 44862259 44862549 -98923906 + AluJb SINE Alu 1 288 -24 2197 180 27 66 chr12 44862549 44862778 -98923677 + L1PB4 LINE L1 5975 6300 -1 252 307 66 7 chr12 44863165 44863302 -98923153 - L1MB3 LINE L1 -2347 5461 5317 21 71 0 0 chr12 44863683 44863725 -98922730 + AT_rich Low_complexity Low_complexity 1 42 0 241 272 62 41 chr12 44863868 44864111 -98922344 - L1MB3 LINE L1 -1717 4429 4182 231 271 52 42 chr12 44864261 44864357 -98922098 + MLT2F LTR ERVL 38 134 -529 271 186 85 0 chr12 44864701 44864760 -98921695 + LTR67 LTR ERVL 492 555 -2 207 100 0 0 chr12 44865069 44865099 -98921356 + (TG)n Simple_repeat Simple_repeat 2 31 0 611 337 43 12 chr12 44865116 44865374 -98921081 - L3 LINE CR1 -832 745 480 889 235 53 90 chr12 44866104 44866483 -98919972 + MLT1A1 LTR MaLR 1 365 0 500 299 69 7 chr12 44867281 44867425 -98919030 - MIR SINE MIR -106 156 4 410 336 15 0 chr12 44868003 44868137 -98